RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8758
(198 letters)
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 54.7 bits (130), Expect = 1e-09
Identities = 19/113 (16%), Positives = 41/113 (36%), Gaps = 2/113 (1%)
Query: 85 HKDMTSAAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRL 144
+ D + +D+R+ S + ++ + P G F G D + RL
Sbjct: 194 PDTRLFVSGACDASAKLWDVRE-GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRL 252
Query: 145 YLAHQGHSRDIYHTKRMQH-VTHTVWSLDNKFVISASDEMNLRVWKAHASEKL 196
+ Y + +T +S + +++ D+ N VW A +++
Sbjct: 253 FDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA 305
Score = 46.7 bits (109), Expect = 6e-07
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 114 HKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIY--HTKRMQHVTHTVWSL 171
H ++ +TSV +S +GR +AG D + ++ A + + H R V+ +
Sbjct: 266 HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR---VSCLGVTD 322
Query: 172 DNKFVISASDEMNLRVW 188
D V + S + L++W
Sbjct: 323 DGMAVATGSWDSFLKIW 339
Score = 41.6 bits (96), Expect = 2e-05
Identities = 18/142 (12%), Positives = 42/142 (29%), Gaps = 31/142 (21%)
Query: 4 VTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGPIRKVVMSLRSNMVSWNPMEAFVFTA 63
+ + + + SD+ R++ A ++L + VS++ +
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL--- 285
Query: 64 ANEDFNLYSYDIRQLNSPLNVHKDMTSAAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTS 123
A +DFN +D + V + V+
Sbjct: 286 ---------------------------LAGYDDFNCNVWDALK-ADRAGVLAGHDNRVSC 317
Query: 124 VDYSPTGREFVAGGYDKSLRLY 145
+ + G G +D L+++
Sbjct: 318 LGVTDDGMAVATGSWDSFLKIW 339
Score = 32.4 bits (72), Expect = 0.030
Identities = 11/113 (9%), Positives = 33/113 (29%), Gaps = 4/113 (3%)
Query: 76 RQLNSPLNVHKDMTSAAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVA 135
Q+ D T + + + + L H + ++ + R V+
Sbjct: 16 NQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLA---KIYAMHWGTDSRLLVS 72
Query: 136 GGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVW 188
D L ++ ++ + + V ++ +V + ++
Sbjct: 73 ASQDGKLIIWDSYTTNKVHAIPLRSSW-VMTCAYAPSGNYVACGGLDNICSIY 124
Score = 31.6 bits (70), Expect = 0.049
Identities = 30/200 (15%), Positives = 64/200 (32%), Gaps = 13/200 (6%)
Query: 4 VTHTVWSLDNKFVISASDEMNLRVWKAHASEKLG-------PIRKVVMSLRSNMVSWNPM 56
+ W D++ ++SAS + L +W ++ + K+ + + N V+ +
Sbjct: 58 IYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGL 117
Query: 57 EAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAAANEDFNLYS-----YDIRQLNSPL 111
+ + R+L N+ +
Sbjct: 118 DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQT 177
Query: 112 NVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSL 171
T V S+ +P R FV+G D S +L+ +G R + T + +
Sbjct: 178 TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF-TGHESDINAICFFP 236
Query: 172 DNKFVISASDEMNLRVWKAH 191
+ + SD+ R++
Sbjct: 237 NGNAFATGSDDATCRLFDLR 256
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 54.0 bits (128), Expect = 2e-09
Identities = 29/190 (15%), Positives = 62/190 (32%), Gaps = 18/190 (9%)
Query: 2 QHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGPIRKVVMSLRSNMVSWNPMEAFVF 61
+ V + D + S S++ +RVW E +R+ + + + +
Sbjct: 144 EWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSIS 203
Query: 62 TAANEDFNLYSYDIRQLNSPLNVHKDMTSAAANEDFNLYSYDIRQLNSPLNVHKDMTSAV 121
A + L S + D + +D+ L + V
Sbjct: 204 EATGSETKKSGKPGPFLLS------------GSRDKTIKMWDVST-GMCLMTLVGHDNWV 250
Query: 122 TSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIY--HTKRMQHVTHTVWSLDNKFVISA 179
V + G+ ++ DK+LR++ H VT + +V++
Sbjct: 251 RGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHF---VTSLDFHKTAPYVVTG 307
Query: 180 SDEMNLRVWK 189
S + ++VW+
Sbjct: 308 SVDQTVKVWE 317
Score = 38.2 bits (87), Expect = 4e-04
Identities = 24/221 (10%), Positives = 64/221 (28%), Gaps = 28/221 (12%)
Query: 4 VTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGPIR---KVVMSLRSNMVSWNPMEAFV 60
VT ++ ++SAS++ ++VW + ++ V + +
Sbjct: 20 VTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSA 79
Query: 61 FTAANEDFNLYSYDIRQLNSPLNVHKDMTSAAANEDFNLYSYDIRQLNSPLNVHKDM--- 117
IR ++ + ++ + S D + +
Sbjct: 80 DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF 139
Query: 118 ---TSAVTSVDYSPTGREFVAGGYDKSLRLYLAH--------QGHSRDIYHTKRMQHVTH 166
V V + G + D+++R+++ + H + ++
Sbjct: 140 TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSY 199
Query: 167 TVWSL-----------DNKFVISASDEMNLRVWKAHASEKL 196
+ S F++S S + +++W L
Sbjct: 200 SSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL 240
Score = 35.5 bits (80), Expect = 0.003
Identities = 27/197 (13%), Positives = 67/197 (34%), Gaps = 16/197 (8%)
Query: 1 MQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGPIRKVVMSLRSNMVSWNPMEAFV 60
+V+ + ++SAS + +++W+ + MV N +
Sbjct: 101 DHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTG--HREWVRMVRPNQDGTLI 158
Query: 61 FTAANE-DFNLYSYDIRQLNSPLNVHKDMTSAAANEDFNLYSYDIRQLNSPLNVHKDMTS 119
+ +N+ ++ ++ + L H+ + + + YS +
Sbjct: 159 ASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEA------------T 206
Query: 120 AVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISA 179
+ G ++G DK+++++ G V ++ KF++S
Sbjct: 207 GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHD-NWVRGVLFHSGGKFILSC 265
Query: 180 SDEMNLRVWKAHASEKL 196
+D+ LRVW +
Sbjct: 266 ADDKTLRVWDYKNKRCM 282
Score = 32.8 bits (73), Expect = 0.018
Identities = 9/60 (15%), Positives = 19/60 (31%), Gaps = 8/60 (13%)
Query: 118 TSAVTSVDYSPTGREFVAGGYDKSLRLY--------LAHQGHSRDIYHTKRMQHVTHTVW 169
S VT V + P V+ D +++++ +GH+ +
Sbjct: 17 RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLAS 76
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 47.1 bits (110), Expect = 4e-07
Identities = 29/222 (13%), Positives = 77/222 (34%), Gaps = 27/222 (12%)
Query: 2 QHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGPIRKVVMSLRSNMVSWNPMEAFV- 60
++ +S D KF+ + +++ +R+W + + ++ + S + +
Sbjct: 122 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSG 181
Query: 61 ---------FTAANEDFNLYSYDIRQLNSPLNVHKDMTSAAANEDFNLYSYDIR------ 105
+ S + ++ AA + D + +D
Sbjct: 182 SGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVE 241
Query: 106 QLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRM---- 161
+L+S +V SV ++ G+ V+G D+S++L+ +++ T
Sbjct: 242 RLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCE 301
Query: 162 -------QHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKL 196
V + ++++++S S + + W + L
Sbjct: 302 VTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL 343
Score = 44.0 bits (102), Expect = 4e-06
Identities = 25/202 (12%), Positives = 60/202 (29%), Gaps = 35/202 (17%)
Query: 1 MQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGPIRKVVMSLRS-----NMVSWNP 55
T V D K++ + S + +RVW + + + S V +
Sbjct: 205 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR 264
Query: 56 MEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAAANEDFNLYSYDIRQLNSPLNVHK 115
V + + D ++ ++++ N+ + + + +
Sbjct: 265 DGQSVVSGS-LDRSVKLWNLQNANNKSDSKTPNS------------------GTCEVTYI 305
Query: 116 DMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAH--------QGHSRDIYHTKRMQHVTHT 167
V SV + ++G D+ + + QGH + + +
Sbjct: 306 GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVIS---VAVANGS 362
Query: 168 VWSLDNKFVISASDEMNLRVWK 189
+ + S + R+WK
Sbjct: 363 SLGPEYNVFATGSGDCKARIWK 384
Score = 35.2 bits (79), Expect = 0.004
Identities = 12/82 (14%), Positives = 32/82 (39%), Gaps = 5/82 (6%)
Query: 1 MQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGPIR---KVVMSLR-SNMVSWNPM 56
V + ++++++S S + + W + L ++ V+S+ +N S P
Sbjct: 308 KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPE 367
Query: 57 EAFVFTAANEDFNLYSYDIRQL 78
T + D + +++
Sbjct: 368 YNVFATGS-GDCKARIWKYKKI 388
Score = 34.0 bits (76), Expect = 0.008
Identities = 23/228 (10%), Positives = 69/228 (30%), Gaps = 34/228 (14%)
Query: 4 VTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGPIRKVVMSLRS--------------- 48
V +S D +++ + ++ +V++ + + + +
Sbjct: 65 VCCVKFSNDGEYLATGCNK-TTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLY 123
Query: 49 -NMVSWNPMEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAAANEDFNLYSYDIRQL 107
V ++P F+ T A + + + + + + +
Sbjct: 124 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 183
Query: 108 NSPL-----------NVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIY 156
+ + T G+ AG D+++R++ + G +
Sbjct: 184 DRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL 243
Query: 157 HTKRMQHVTHT------VWSLDNKFVISASDEMNLRVWKAHASEKLEH 198
++ H V++ D + V+S S + ++++W +
Sbjct: 244 DSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSD 291
Score = 29.8 bits (65), Expect = 0.22
Identities = 20/104 (19%), Positives = 43/104 (41%), Gaps = 18/104 (17%)
Query: 105 RQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAH--------QGHSRDIY 156
R+++ L+ D TS V V +S G ++A G +K+ ++Y S
Sbjct: 49 REIDVELHKSLDHTSVVCCVKFSNDGE-YLATGCNKTTQVYRVSDGSLVARLSDDSAANK 107
Query: 157 HTKRMQ---------HVTHTVWSLDNKFVISASDEMNLRVWKAH 191
+ + ++ +S D KF+ + +++ +R+W
Sbjct: 108 DPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIE 151
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 46.7 bits (109), Expect = 5e-07
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 123 SVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDE 182
S+ ++ G+ FV+ G D L + G S I+ +K V S+D+K++++ S +
Sbjct: 270 SLKFAYCGKWFVSTGKDNLLNAWRTPYGAS--IFQSKESSSVLSCDISVDDKYIVTGSGD 327
Query: 183 MNLRVWK 189
V++
Sbjct: 328 KKATVYE 334
Score = 32.5 bits (72), Expect = 0.025
Identities = 11/78 (14%), Positives = 24/78 (30%), Gaps = 5/78 (6%)
Query: 118 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSL----DN 173
V +V S R V G ++++ ++ + + + S D
Sbjct: 51 GEVVCAVTISNPTR-HVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG 109
Query: 174 KFVISASDEMNLRVWKAH 191
+I + L +W
Sbjct: 110 CTLIVGGEASTLSIWDLA 127
Score = 32.5 bits (72), Expect = 0.028
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Query: 91 AAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLY 145
+ +D L ++ S +S+V S D S + V G DK +Y
Sbjct: 281 VSTGKDNLLNAWRTPYGASIFQSK--ESSSVLSCDISVDDKYIVTGSGDKKATVY 333
Score = 29.4 bits (64), Expect = 0.26
Identities = 21/203 (10%), Positives = 53/203 (26%), Gaps = 12/203 (5%)
Query: 4 VTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGPIRKVVMSLRSNMVSWNPMEAFVFTA 63
+ D +I + L +W A + ++ +P F+
Sbjct: 100 IRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSC 159
Query: 64 ANEDFNLYSYDIRQLNSPLNVHKDMTSAAANEDFNLY----------SYDIRQLNSPLNV 113
++ Q ++ + +
Sbjct: 160 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQ 219
Query: 114 HKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDN 173
D TS + S+ Y PTG G ++ + ++ ++ + ++
Sbjct: 220 QHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVL--SLKFAYCG 277
Query: 174 KFVISASDEMNLRVWKAHASEKL 196
K+ +S + L W+ +
Sbjct: 278 KWFVSTGKDNLLNAWRTPYGASI 300
Score = 28.2 bits (61), Expect = 0.57
Identities = 10/75 (13%), Positives = 24/75 (32%), Gaps = 4/75 (5%)
Query: 1 MQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGPIRKVVMSLRSNMVSWNPMEAFV 60
V ++ K+ +S + L W+ I + S + + ++
Sbjct: 265 ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA---SIFQSKESSSVLSCDISVDDKYI 321
Query: 61 FTAANEDFNLYSYDI 75
T + D Y++
Sbjct: 322 VTGS-GDKKATVYEV 335
Score = 25.5 bits (54), Expect = 4.8
Identities = 7/52 (13%), Positives = 15/52 (28%)
Query: 118 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVW 169
+ + S P G + GG +L ++ R + +
Sbjct: 97 DNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALA 148
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 371
Score = 45.2 bits (105), Expect = 2e-06
Identities = 10/83 (12%), Positives = 28/83 (33%), Gaps = 7/83 (8%)
Query: 113 VHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIY----HTKRMQHVTHTV 168
H + ++ ++ + + + +Y ++ H + VT
Sbjct: 2 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQ---VTGVD 58
Query: 169 WSLDNKFVISASDEMNLRVWKAH 191
W+ D+ +++ + N VW
Sbjct: 59 WAPDSNRIVTCGTDRNAYVWTLK 81
Score = 33.7 bits (75), Expect = 0.012
Identities = 13/80 (16%), Positives = 28/80 (35%), Gaps = 1/80 (1%)
Query: 91 AAANEDFNLYSYDIR-QLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQ 149
A + ++ Y+ ++ K+ VT VD++P V G D++ ++
Sbjct: 23 AICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG 82
Query: 150 GHSRDIYHTKRMQHVTHTVW 169
+ R+ V
Sbjct: 83 RTWKPTLVILRINRAARCVR 102
Score = 27.5 bits (59), Expect = 1.2
Identities = 4/39 (10%), Positives = 18/39 (46%)
Query: 156 YHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASE 194
YH+ ++ ++ W+ D + + + +++ ++
Sbjct: 2 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK 40
Score = 26.0 bits (55), Expect = 3.4
Identities = 10/53 (18%), Positives = 21/53 (39%)
Query: 4 VTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGPIRKVVMSLRSNMVSWNPM 56
VT W+ D+ +++ + N VW + + ++ + V W P
Sbjct: 54 VTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPN 106
Score = 24.8 bits (52), Expect = 9.4
Identities = 6/60 (10%), Positives = 21/60 (35%)
Query: 4 VTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGPIRKVVMSLRSNMVSWNPMEAFVFTA 63
++ W+ D + + + +++ ++ + + + V W P + T
Sbjct: 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 42.1 bits (97), Expect = 2e-05
Identities = 21/188 (11%), Positives = 55/188 (29%), Gaps = 6/188 (3%)
Query: 9 WSLDNKFVISASDEMNLRVWKAHASEKLGPIRKVVMSLRSNMVSWNPMEAFVFTAANEDF 68
+ + V + S +L ++ ++ + + L + + + A + A+N+
Sbjct: 75 DAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRL 134
Query: 69 NLYSYDIRQLNSPLNVHKDMTSAAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSP 128
+ + + K A + L +L + + TSVD S
Sbjct: 135 LSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE 194
Query: 129 TGREFVAGGYDKSLRLYLAHQGHSRDIYH-----TKRMQHVTHTVWSLDNKFVISASDEM 183
G G + ++++ + + +S + A D
Sbjct: 195 RGL-IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN 253
Query: 184 NLRVWKAH 191
+ +
Sbjct: 254 SFGCITLY 261
Score = 29.1 bits (63), Expect = 0.36
Identities = 15/102 (14%), Positives = 35/102 (34%), Gaps = 18/102 (17%)
Query: 109 SPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLY--------------LAHQGHSRD 154
+ N K + + SV S V+ D L+++ +H H
Sbjct: 5 ATANAGKAHDADIFSV--SACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSG 62
Query: 155 IYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKL 196
++H +Q + + + V + S +L ++ ++
Sbjct: 63 LHHVDVLQAIER--DAFELCLVATTSFSGDLLFYRITREDET 102
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 360
Score = 41.0 bits (94), Expect = 4e-05
Identities = 18/190 (9%), Positives = 43/190 (22%), Gaps = 24/190 (12%)
Query: 1 MQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGPIRKVVMSLRSNMVSWNPMEAFV 60
H + D+K + S + + S NP +
Sbjct: 178 NSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTK--- 234
Query: 61 FTAANEDFNLYSYDIRQLNSPLNVHKDMTSAAANEDFNLYSYDIRQLNSPLNVHKDMTSA 120
+ DM ++ + + Y + +
Sbjct: 235 ----------LVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMII------PLESSILI 278
Query: 121 VTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISAS 180
+ + + L Y ++ + ++T S D K V+
Sbjct: 279 YSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKN-----NLTDLRLSADRKTVMVRK 333
Query: 181 DEMNLRVWKA 190
D+ + +
Sbjct: 334 DDGKIYTFPL 343
Score = 25.6 bits (54), Expect = 4.2
Identities = 16/192 (8%), Positives = 43/192 (22%), Gaps = 28/192 (14%)
Query: 2 QHVTHTVWSLDNKFVISASDE--MNLRVWKAHASEKLGPIRKVVMSLRSNMVSWNPMEAF 59
+ + D K L ++ + K + + ++ + V N A
Sbjct: 43 LRIRYVRRGGDTKVAFIHGTREGDFLGIYDY-RTGKAEKFEENLGNVFAMGVDRNGKFAV 101
Query: 60 VFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAAANEDFNLYSYDIRQLNSPLNVHKDMTS 119
V E + + + +T +++ +Y + + +
Sbjct: 102 VANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAI 161
Query: 120 AVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISA 179
++ + T H + D+K +
Sbjct: 162 -------------------------HVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYL 196
Query: 180 SDEMNLRVWKAH 191
S
Sbjct: 197 SYRSLDPSPDRV 208
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 37.5 bits (85), Expect = 5e-04
Identities = 28/188 (14%), Positives = 53/188 (28%), Gaps = 6/188 (3%)
Query: 7 TVWSLDNKFVISASDEMNLRVWKAHASEKLGPIR---KVVMSLRSNMVSWNPMEAFVFTA 63
T ++S SD+ L+VW A + L + V S +
Sbjct: 21 TCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLK 80
Query: 64 ANEDFNLYSYDIRQLNSPLNVHKDMTSAAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTS 123
++ + + + + + +H M
Sbjct: 81 VWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAV 140
Query: 124 VDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEM 183
GR V+G YD +++ + HT + D V+S S +
Sbjct: 141 RCVQYDGRRVVSGAYDFMVKV---WDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDT 197
Query: 184 NLRVWKAH 191
++RVW
Sbjct: 198 SIRVWDVE 205
Score = 31.3 bits (69), Expect = 0.074
Identities = 14/106 (13%), Positives = 25/106 (23%), Gaps = 8/106 (7%)
Query: 91 AAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQG 150
+ N D + +DI+ + + D +++L+ G
Sbjct: 231 VSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTG 290
Query: 151 HSRDIYHTKRMQHVTHTVWSL----DNKFVISASD----EMNLRVW 188
T VW + S E L V
Sbjct: 291 EFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVL 336
Score = 25.5 bits (54), Expect = 4.4
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 10/48 (20%)
Query: 149 QGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKL 196
+GH + T ++S SD+ L+VW A + L
Sbjct: 13 KGHDDHVI----------TCLQFCGNRIVSGSDDNTLKVWSAVTGKCL 50
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 36.4 bits (82), Expect = 0.001
Identities = 12/85 (14%), Positives = 27/85 (31%), Gaps = 5/85 (5%)
Query: 111 LNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLY-LAHQGHSRDIYHTKRMQH-VTHTV 168
KD ++ + P+ + +D SL +Y Q + D+ + R +H +
Sbjct: 7 EQAPKD---YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN 63
Query: 169 WSLDNKFVISASDEMNLRVWKAHAS 193
+ + I +
Sbjct: 64 FIDNTDLQIYVGTVQGEILKVDLIG 88
Score = 32.1 bits (71), Expect = 0.036
Identities = 9/77 (11%), Positives = 27/77 (35%), Gaps = 2/77 (2%)
Query: 114 HKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDN 173
++ V S+++SP + G D + + + I + + + + +
Sbjct: 247 DTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR--KKIKNFAKFNEDSVVKIACSD 304
Query: 174 KFVISASDEMNLRVWKA 190
+ A+ + + A
Sbjct: 305 NILCLATSDDTFKTNAA 321
Score = 27.5 bits (59), Expect = 1.1
Identities = 5/38 (13%), Positives = 14/38 (36%)
Query: 4 VTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGPIRK 41
++ ++ S + +L V+K K + +
Sbjct: 14 ISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQ 51
Score = 25.6 bits (54), Expect = 4.2
Identities = 5/32 (15%), Positives = 12/32 (37%)
Query: 164 VTHTVWSLDNKFVISASDEMNLRVWKAHASEK 195
++ ++ S + +L V+K K
Sbjct: 14 ISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK 45
Score = 24.8 bits (52), Expect = 8.2
Identities = 9/71 (12%), Positives = 20/71 (28%)
Query: 99 LYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHT 158
+Y +DI+ N L + ++ + G + L + G T
Sbjct: 37 VYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALT 96
Query: 159 KRMQHVTHTVW 169
++
Sbjct: 97 NNEANLGICRI 107
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 34.9 bits (78), Expect = 0.003
Identities = 10/97 (10%), Positives = 33/97 (34%), Gaps = 1/97 (1%)
Query: 49 NMVSWNPMEAFVFTAANEDFNLYSYDIRQLNSPLNVHKDMTSAAANEDFNLYSYDIRQLN 108
+ ++ + N S+ + + ++ A + D N++ Y +++
Sbjct: 189 YDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM 248
Query: 109 SPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLY 145
+ V ++ + V+ G D ++ +
Sbjct: 249 KIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRW 284
Score = 30.3 bits (66), Expect = 0.14
Identities = 8/76 (10%), Positives = 22/76 (28%), Gaps = 1/76 (1%)
Query: 114 HKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDN 173
+ + + G D ++ +Y + V + +W +
Sbjct: 211 ISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS 270
Query: 174 KFVISASDEMNLRVWK 189
V S+ + ++ W
Sbjct: 271 TLV-SSGADACIKRWN 285
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 34.2 bits (76), Expect = 0.006
Identities = 9/71 (12%), Positives = 23/71 (32%)
Query: 118 TSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVI 177
A+T++ S G+ + + + + G S ++ +T +
Sbjct: 12 NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFT 71
Query: 178 SASDEMNLRVW 188
+ D+ V
Sbjct: 72 VSWDDHLKVVP 82
Score = 30.7 bits (67), Expect = 0.10
Identities = 12/64 (18%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Query: 126 YSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKR-MQHVTHTVWSLDNKFVISASDEMN 184
+SP G D S+ ++ ++ I ++V L+ ++SA + N
Sbjct: 232 WSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSN 291
Query: 185 LRVW 188
++ W
Sbjct: 292 IKFW 295
Score = 26.5 bits (56), Expect = 2.7
Identities = 8/38 (21%), Positives = 12/38 (31%)
Query: 4 VTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGPIRK 41
+T S D K + SA E ++ W
Sbjct: 15 ITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPD 52
Score = 26.1 bits (55), Expect = 3.2
Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 9/48 (18%)
Query: 149 QGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKL 196
GH++ +T S D K + SA E ++ W
Sbjct: 9 YGHNKA---------ITALSSSADGKTLFSADAEGHINSWDISTGISN 47
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Pseudomonas putida [TaxId: 303]}
Length = 346
Score = 33.6 bits (75), Expect = 0.011
Identities = 20/196 (10%), Positives = 49/196 (25%), Gaps = 13/196 (6%)
Query: 1 MQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGPIRKVVMSLRSNMVSWNPMEAFV 60
+ V + D ++ D + V + + + P +
Sbjct: 144 PRQVYLMRAADDGSLYVAGPDIYKMDVKTGK------YTVALPLRNWNRKGYSAPDVLYF 197
Query: 61 FTAANEDFNLYSYDIRQLNSPLNVHKDMTSAAANEDFNLYSYDIRQLNSPLNVHKDMTSA 120
+ + A A+ + S D++ + D+T
Sbjct: 198 WPHQSPRHEFSMLYTIARFKDDKQDP----ATADLLYGYLSVDLKTGKTHTQEFADLTEL 253
Query: 121 VTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISAS 180
+ SP + G ++ + L + + V + +
Sbjct: 254 YFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVA---FDKKGDKLYLGG 310
Query: 181 DEMNLRVWKAHASEKL 196
+L V+ EK+
Sbjct: 311 TFNDLAVFNPDTLEKV 326
Score = 28.6 bits (62), Expect = 0.46
Identities = 16/190 (8%), Positives = 48/190 (25%), Gaps = 12/190 (6%)
Query: 9 WSLDNKFVISASDEMNLRVWKAHASEKLGPIRKVVMSLRSNMVSWNPMEAFVFTAANEDF 68
++++I + NL V + + P + N
Sbjct: 4 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSC-VMPDKFGPGTAMMAPDNRTAYVLNNHYG 62
Query: 69 NLYSYDIRQLNSPLNVHKDMTSAAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSP 128
++Y D+ + + + ++ + + D +V+ +
Sbjct: 63 DIYGIDLDTCKNTFHANLSSVPG-----------EVGRSMYSFAISPDGKEVYATVNPTQ 111
Query: 129 TGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVW 188
+ + A ++ + + V + D ++ D + V
Sbjct: 112 RLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVK 171
Query: 189 KAHASEKLEH 198
+ L
Sbjct: 172 TGKYTVALPL 181
Score = 27.4 bits (59), Expect = 1.1
Identities = 5/39 (12%), Positives = 11/39 (28%)
Query: 2 QHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGPIR 40
+ + +L V+ EK+ I+
Sbjct: 292 HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 330
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 31.8 bits (70), Expect = 0.042
Identities = 7/64 (10%), Positives = 19/64 (29%)
Query: 125 DYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMN 184
+SP G + + DK+++++ + ++S S
Sbjct: 245 TWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGF 304
Query: 185 LRVW 188
+
Sbjct: 305 INFV 308
Score = 30.6 bits (67), Expect = 0.090
Identities = 10/88 (11%), Positives = 25/88 (28%), Gaps = 1/88 (1%)
Query: 82 LNVHKDMTSAAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKS 141
L ++Y+ + L ++ + + T SP+G +G +
Sbjct: 23 LGNTPAGDKIQYCNGTSVYTVPVGSLT-DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGN 81
Query: 142 LRLYLAHQGHSRDIYHTKRMQHVTHTVW 169
+R++ Q +
Sbjct: 82 VRIWDTTQTTHILKTTIPVFSGPVKDIS 109
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 31.0 bits (68), Expect = 0.084
Identities = 17/191 (8%), Positives = 58/191 (30%), Gaps = 2/191 (1%)
Query: 1 MQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGPIRKVVMSLRSNMVSWNPMEAFV 60
+ + + S + K + + V + F
Sbjct: 134 GEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK 193
Query: 61 FTAANEDFNLYSYDIRQLNSPLNVHKDMTSAAANEDFNLYSYDIRQLNSPLNVHKDMTSA 120
F+A++ + +R + + + + + ++ + + + + ++
Sbjct: 194 FSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQG 253
Query: 121 VTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIY--HTKRMQHVTHTVWSLDNKFVIS 178
++F G D ++R++ + +++ + V + N +IS
Sbjct: 254 GIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIIS 313
Query: 179 ASDEMNLRVWK 189
S + L ++
Sbjct: 314 LSLDGTLNFYE 324
Score = 28.0 bits (60), Expect = 0.89
Identities = 12/75 (16%), Positives = 26/75 (34%)
Query: 1 MQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKLGPIRKVVMSLRSNMVSWNPMEAFV 60
+Q + LD++ + + +RVW S+ + L + V
Sbjct: 251 VQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR 310
Query: 61 FTAANEDFNLYSYDI 75
+ + D L Y++
Sbjct: 311 IISLSLDGTLNFYEL 325
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 29.9 bits (65), Expect = 0.22
Identities = 5/75 (6%), Positives = 18/75 (24%), Gaps = 1/75 (1%)
Query: 114 HKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDN 173
+ ++++ + G + +Y G K + +
Sbjct: 277 FSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GK 335
Query: 174 KFVISASDEMNLRVW 188
V + + +
Sbjct: 336 TLVAAVEKDGQSFLE 350
Score = 29.1 bits (63), Expect = 0.33
Identities = 14/106 (13%), Positives = 28/106 (26%), Gaps = 1/106 (0%)
Query: 91 AAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPTGREFVAGGYDKSLRLYLAHQG 150
+D + YD L V ++ Y+ G +
Sbjct: 27 ITGADDKMIRVYDSIN-KKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGC 85
Query: 151 HSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKL 196
+ V + K++++ S + L VWK +
Sbjct: 86 CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSV 131
Score = 25.2 bits (53), Expect = 6.4
Identities = 9/48 (18%), Positives = 21/48 (43%), Gaps = 10/48 (20%)
Query: 149 QGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVWKAHASEKL 196
+GH + T ++ +VI+ +D+ +RV+ + + L
Sbjct: 9 RGHMTSVI----------TCLQFEDNYVITGADDKMIRVYDSINKKFL 46
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 28.7 bits (62), Expect = 0.47
Identities = 14/125 (11%), Positives = 39/125 (31%), Gaps = 9/125 (7%)
Query: 70 LYSYDIRQLNSPLNVHKDMTSAAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPT 129
+ + + + ++D + + D + +DI +
Sbjct: 171 VRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGAC---LRVLEGHEELVRCIRFD 227
Query: 130 GREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHV----THTVWSL--DNKFVISASDEM 183
+ V+G YD ++++ + V+ L D ++S+S +
Sbjct: 228 NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDD 287
Query: 184 NLRVW 188
+ +W
Sbjct: 288 TILIW 292
Score = 28.3 bits (61), Expect = 0.53
Identities = 19/196 (9%), Positives = 59/196 (30%), Gaps = 9/196 (4%)
Query: 9 WSLDNKFVISASDEMNLRVWKAHASEKLGPIR---KVVMSLRSN---MVSWNPMEAFVFT 62
D++ ++S + +++W + E + V+ L+ + +++ +
Sbjct: 21 LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVW 80
Query: 63 AANEDFNLYSYDIRQLNSPLNVHKDMTSAAANEDFNLYSYDIRQLNSPLNVHKDMTSAVT 122
N L + + ++D ++ +D+ +
Sbjct: 81 DVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA 140
Query: 123 SVDYSPTGREFVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDE 182
+ V+ D++++++ T ++ V+S S +
Sbjct: 141 VNVVDFDDKYIVSASGDRTIKVWNTSTCE---FVRTLNGHKRGIACLQYRDRLVVSGSSD 197
Query: 183 MNLRVWKAHASEKLEH 198
+R+W L
Sbjct: 198 NTIRLWDIECGACLRV 213
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Paracoccus
denitrificans [TaxId: 266]}
Length = 432
Score = 26.7 bits (58), Expect = 2.0
Identities = 19/180 (10%), Positives = 44/180 (24%), Gaps = 30/180 (16%)
Query: 10 SLDNKFVISASDEMNLRVWKAHASEKLGPIRKVVMSLRSNMVSWNPMEAFVFTAANEDFN 69
L+N F ++ D + + + ++ + ++F D
Sbjct: 29 DLENLFSVTLRDAGQIALIDG---STYEIKTVLDTGYAVHISRLSASGRYLFV-IGRDGK 84
Query: 70 LYSYDIRQLNSPLNVHKDMTSAAANEDFNLYSYDIRQLNSPLNVHKDMTSAVTSVDYSPT 129
+ D+ +I+ + ++ TS
Sbjct: 85 VNMIDLWMKE------------------PTTVAEIKIGSEARSI-------ETSKMEGWE 119
Query: 130 GREFVAGGY-DKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASDEMNLRVW 188
+ +AG Y + + I T+ M + I AS +
Sbjct: 120 DKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIV 179
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B
chain {Paracoccus denitrificans [TaxId: 266]}
Length = 337
Score = 25.9 bits (55), Expect = 4.1
Identities = 7/63 (11%), Positives = 17/63 (26%)
Query: 14 KFVISASDEMNLRVWKAHASEKLGPIRKVVMSLRSNMVSWNPMEAFVFTAANEDFNLYSY 73
++++ + L V I + P + N+ +L
Sbjct: 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61
Query: 74 DIR 76
D+
Sbjct: 62 DLV 64
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 426
Score = 25.3 bits (54), Expect = 6.1
Identities = 23/187 (12%), Positives = 47/187 (25%), Gaps = 32/187 (17%)
Query: 5 THTVWSLD--NKFVISASDEMNLRVWKAHASEKLGPIRKVVMSLRSNMVSWNPMEAFVFT 62
+ LD N F ++ D + + + + + I ++ + +S + V
Sbjct: 22 KKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVI-DTGYAVHISRMSASGRYLLV-- 78
Query: 63 AANEDFNLYSYDIRQLNSPLNVHKDMTSAAANEDFNLYSYDIRQLNSPLNVHKDMTSAVT 122
D + D+ +I+ +V +
Sbjct: 79 -IGRDARIDMIDLWAKE------------------PTKVAEIKIGIEARSV-------ES 112
Query: 123 SVDYSPTGRE-FVAGGYDKSLRLYLAHQGHSRDIYHTKRMQHVTHTVWSLDNKFVISASD 181
S R + + + I T+ M T T I AS
Sbjct: 113 SKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASH 172
Query: 182 EMNLRVW 188
E +
Sbjct: 173 EHPEFIV 179
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.128 0.385
Gapped
Lambda K H
0.267 0.0373 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 703,353
Number of extensions: 29356
Number of successful extensions: 157
Number of sequences better than 10.0: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 82
Length of query: 198
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 117
Effective length of database: 1,295,466
Effective search space: 151569522
Effective search space used: 151569522
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (24.0 bits)