BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy876
(179 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5SXJ3|FANCJ_MOUSE Fanconi anemia group J protein homolog OS=Mus musculus GN=Brip1
PE=2 SV=1
Length = 1174
Score = 91.7 bits (226), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 51/69 (73%)
Query: 84 TLHFWCLNSGLVFSDIRESARSVILTSGTLAPVDSFQSELGTQFPIKLEANHVIDKDQVF 143
L+FWCLN + FSDI + R+++LTSGTL+P+ SF SELG F I+LEANHVI QV+
Sbjct: 591 ALNFWCLNPAVAFSDINDKVRTIVLTSGTLSPLKSFSSELGVTFSIQLEANHVISNSQVW 650
Query: 144 IGVLGQGQK 152
+G +G G K
Sbjct: 651 VGTVGSGPK 659
Score = 30.4 bits (67), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 1 MTILSSRKHTCINDEVLKAKENINDLCQELKE-TEGESNRWY 41
MTILSSR H+C++ EV+ N + C EL + G+S +Y
Sbjct: 276 MTILSSRDHSCVHPEVV-GNFNRKEKCMELLDGKHGKSCYFY 316
>sp|Q3YK19|FANCJ_CHICK Fanconi anemia group J protein homolog OS=Gallus gallus GN=BRIP1
PE=2 SV=1
Length = 1252
Score = 90.1 bits (222), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 59/79 (74%), Gaps = 1/79 (1%)
Query: 72 YRKDRTPMSIKYTLHFWCLNSGLVFSDIRESARSVILTSGTLAPVDSFQSELGTQFPIKL 131
++++ ++ + L+FWCLN + FSD+ + R+V+LTSGTL+P+DSF SELG +F I+L
Sbjct: 587 HKRNLRHKTVVHMLNFWCLNPAVAFSDLND-VRTVVLTSGTLSPMDSFSSELGVKFSIQL 645
Query: 132 EANHVIDKDQVFIGVLGQG 150
EANHVI QV++G +G G
Sbjct: 646 EANHVIRNSQVWVGTIGTG 664
Score = 37.4 bits (85), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 1 MTILSSRKHTCINDEVLKAKENINDLCQELKE-TEGESNRWY 41
MTILSSR +TCI+ V + N N+LC EL E G+S +Y
Sbjct: 282 MTILSSRDYTCIHPVVSSSNSNRNELCVELLEGKHGKSCLYY 323
>sp|Q9BX63|FANCJ_HUMAN Fanconi anemia group J protein OS=Homo sapiens GN=BRIP1 PE=1 SV=1
Length = 1249
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 51/70 (72%)
Query: 83 YTLHFWCLNSGLVFSDIRESARSVILTSGTLAPVDSFQSELGTQFPIKLEANHVIDKDQV 142
+ L+FWCLN + FSDI ++++LTSGTL+P+ SF SELG F I+LEANH+I QV
Sbjct: 587 HVLNFWCLNPAVAFSDINGKVQTIVLTSGTLSPMKSFSSELGVTFTIQLEANHIIKNSQV 646
Query: 143 FIGVLGQGQK 152
++G +G G K
Sbjct: 647 WVGTIGSGPK 656
Score = 33.5 bits (75), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 1 MTILSSRKHTCINDEVLKAKENINDLCQEL 30
MTILSSR HTC++ EV+ N N+ C EL
Sbjct: 273 MTILSSRDHTCVHPEVV-GNFNRNEKCMEL 301
>sp|Q5RE34|RTEL1_PONAB Regulator of telomere elongation helicase 1 OS=Pongo abelii
GN=RTEL1 PE=2 SV=1
Length = 1302
Score = 73.2 bits (178), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 47/67 (70%), Gaps = 1/67 (1%)
Query: 85 LHFWCLNSGLVFSD-IRESARSVILTSGTLAPVDSFQSELGTQFPIKLEANHVIDKDQVF 143
L +WC + GL + +R+ RS+ILTSGTLAPV SF E+ FP+ LE H+IDK Q++
Sbjct: 454 LSYWCFSPGLSMRELVRQGVRSLILTSGTLAPVSSFALEMQIPFPVCLENPHIIDKHQIW 513
Query: 144 IGVLGQG 150
+GV+ +G
Sbjct: 514 VGVVPRG 520
>sp|Q9NZ71|RTEL1_HUMAN Regulator of telomere elongation helicase 1 OS=Homo sapiens
GN=RTEL1 PE=1 SV=2
Length = 1219
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Query: 85 LHFWCLNSGLVFSD-IRESARSVILTSGTLAPVDSFQSELGTQFPIKLEANHVIDKDQVF 143
L +WC + G + +R+ RS+ILTSGTLAPV SF E+ FP+ LE H+IDK Q++
Sbjct: 453 LSYWCFSPGHSMHELVRQGVRSLILTSGTLAPVSSFALEMQIPFPVCLENPHIIDKHQIW 512
Query: 144 IGVLGQG 150
+GV+ +G
Sbjct: 513 VGVVPRG 519
>sp|P0C928|RTEL1_DANRE Regulator of telomere elongation helicase 1 OS=Danio rerio GN=rtel1
PE=3 SV=1
Length = 1177
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 85 LHFWCLNSGLVFSDI-RESARSVILTSGTLAPVDSFQSELGTQFPIKLEANHVIDKDQVF 143
L +WC + G ++ R+ R +ILTSGTL+P+ SF E+ FP+ LE HVI +DQ+F
Sbjct: 452 LSYWCFSPGFSMQELLRQEVRCIILTSGTLSPLSSFTCEMQIPFPVSLENPHVIQRDQIF 511
Query: 144 IGVLGQG 150
+ ++ +G
Sbjct: 512 VSIIEKG 518
>sp|A4K436|RTEL1_BOVIN Regulator of telomere elongation helicase 1 OS=Bos taurus GN=RTEL1
PE=2 SV=1
Length = 1216
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Query: 85 LHFWCLNSGLVFSD-IRESARSVILTSGTLAPVDSFQSELGTQFPIKLEANHVIDKDQVF 143
L +WC + G + +R+ R++ILTSGTLAP+ SF E+ FP+ LE HVI++ Q++
Sbjct: 451 LSYWCFSPGHSMRELVRQGVRTLILTSGTLAPMASFSLEMQIPFPVCLENPHVINQHQIW 510
Query: 144 IGVLGQG 150
+GV+ +G
Sbjct: 511 VGVIPKG 517
>sp|B0W9F4|RTEL1_CULQU Regulator of telomere elongation helicase 1 homolog OS=Culex
quinquefasciatus GN=CPIJ003765 PE=3 SV=1
Length = 978
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 84 TLHFWCLNSGLVFSDIR-ESARSVILTSGTLAPVDSFQSELGTQFPIKLEANHVIDKDQV 142
++FWC N G + +ARS+ILTSGTLAP+ SEL +KLE H+ID QV
Sbjct: 463 VINFWCFNPGFGMRQLLGRNARSIILTSGTLAPLKPLISELDIPIAVKLENPHIIDGSQV 522
Query: 143 FIGVLGQG 150
+ ++GQG
Sbjct: 523 CVKIVGQG 530
>sp|Q5RJZ1|RTEL1_RAT Regulator of telomere elongation helicase 1 OS=Rattus norvegicus
GN=Rtel1 PE=2 SV=2
Length = 1274
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Query: 85 LHFWCLNSGLVFSD-IRESARSVILTSGTLAPVDSFQSELGTQFPIKLEANHVIDKDQVF 143
L +WC + + +++ R++ILTSGTLAP+ SF E+ FP+ LE H+IDK+Q++
Sbjct: 453 LSYWCFSPSHSMRELVQQGVRTLILTSGTLAPLSSFALEMQIPFPVCLENPHIIDKNQLW 512
Query: 144 IGVLGQG 150
+GV+ +G
Sbjct: 513 VGVIPRG 519
>sp|Q7QEI1|RTEL1_ANOGA Regulator of telomere elongation helicase 1 homolog OS=Anopheles
gambiae GN=AGAP000634 PE=3 SV=5
Length = 991
Score = 63.2 bits (152), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 49/95 (51%), Gaps = 12/95 (12%)
Query: 80 SIKYTLHFWCLNSGLVFSDIRESA-RSVILTSGTLAPVDSFQSELGTQFPIKLEANHVID 138
S ++FWC N G + +S RS+ILTSGTLAP+ F SEL + LE H+I
Sbjct: 450 STSKVINFWCFNPGFGMRQLVDSGTRSIILTSGTLAPLKPFISELSLPVAVSLENPHIIA 509
Query: 139 KDQVFIGVLGQGQKVFIGVLGQGPQNIPLQALYKN 173
+ Q V++ V+ GP + L + +KN
Sbjct: 510 RSQ-----------VYVKVITHGPDRVELNSSFKN 533
>sp|Q16X92|RTEL1_AEDAE Regulator of telomere elongation helicase 1 homolog OS=Aedes
aegypti GN=AAEL008960 PE=3 SV=1
Length = 1010
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 85 LHFWCLNSGLVFSDIR-ESARSVILTSGTLAPVDSFQSELGTQFPIKLEANHVIDKDQVF 143
+ FWC N G + +ARS+ILTSGTLAP+ SEL ++LE H+ID QV
Sbjct: 462 VSFWCFNPGFGMRQLLGRNARSIILTSGTLAPLKPLISELDIPIAVRLENPHIIDGSQVC 521
Query: 144 IGVLGQG 150
+ ++GQG
Sbjct: 522 VKIVGQG 528
>sp|Q0VGM9|RTEL1_MOUSE Regulator of telomere elongation helicase 1 OS=Mus musculus
GN=Rtel1 PE=2 SV=2
Length = 1203
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 85 LHFWCLNSGLVFSD-IRESARSVILTSGTLAPVDSFQSELGTQFPIKLEANHVIDKDQVF 143
L +WC + + + + R++ILTSGTLAP+ SF E+ FP+ LE H+IDK+Q++
Sbjct: 453 LSYWCFSPSQSMRELVCQGVRTLILTSGTLAPLSSFALEMQIPFPVCLENPHIIDKNQLW 512
Query: 144 IGVLGQG 150
+G++ +G
Sbjct: 513 VGIVPRG 519
>sp|Q6H1L8|RTEL1_MUSSP Regulator of telomere elongation helicase 1 OS=Mus spretus GN=Rtel1
PE=2 SV=1
Length = 1203
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 85 LHFWCLNSGLVFSD-IRESARSVILTSGTLAPVDSFQSELGTQFPIKLEANHVIDKDQVF 143
L +WC + + + + R++ILTSGTLAP+ SF E FP+ LE H+IDK+Q++
Sbjct: 453 LSYWCFSPSQSMRELVCQGVRTLILTSGTLAPLSSFALEKQIPFPVCLENPHIIDKNQLW 512
Query: 144 IGVLGQG 150
+G++ +G
Sbjct: 513 VGIVPRG 519
>sp|B4M891|RTEL1_DROVI Regulator of telomere elongation helicase 1 homolog OS=Drosophila
virilis GN=GJ16649 PE=3 SV=1
Length = 1005
Score = 60.1 bits (144), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 85 LHFWCLNSGLVFSDIRES-ARSVILTSGTLAPVDSFQSELGTQFPIKLEANHVIDKDQVF 143
++FWC N G + + RSVILTSGTLAP+ +EL LE H++D+ QV+
Sbjct: 454 INFWCFNPGFGMEQLLNAHVRSVILTSGTLAPLKPLIAELAIPVAQHLENPHIVDRSQVY 513
Query: 144 IGVLGQG 150
+ ++G G
Sbjct: 514 VKIIGTG 520
>sp|B4PZB4|RTEL1_DROYA Regulator of telomere elongation helicase 1 homolog OS=Drosophila
yakuba GN=GE16425 PE=3 SV=1
Length = 985
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 79 MSIKYTLHFWCLNSGLVFSDIRES-ARSVILTSGTLAPVDSFQSELGTQFPIKLEANHVI 137
+ + ++FWC N G + + RSVILTSGTLAP+ +EL LE H++
Sbjct: 448 IKVAKIINFWCFNPGFGMEQLLNTQVRSVILTSGTLAPLKPLIAELAIPVAQHLENPHIV 507
Query: 138 DKDQVFIGVLGQG 150
D+ QV++ ++G G
Sbjct: 508 DQSQVYVKIIGTG 520
>sp|B3MSG8|RTEL1_DROAN Regulator of telomere elongation helicase 1 homolog OS=Drosophila
ananassae GN=GF20802 PE=3 SV=1
Length = 994
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 85 LHFWCLNSGLVFSDIRES-ARSVILTSGTLAPVDSFQSELGTQFPIKLEANHVIDKDQVF 143
++FWC N G + + RSVILTSGTLAP+ +EL LE H++D+ QV+
Sbjct: 454 INFWCFNPGFGMEQLLNTQVRSVILTSGTLAPLKPLIAELAIPVAQHLENPHIVDQSQVY 513
Query: 144 IGVLGQG 150
+ ++G G
Sbjct: 514 VKIIGTG 520
>sp|B4NDG5|RTEL1_DROWI Regulator of telomere elongation helicase 1 homolog OS=Drosophila
willistoni GN=GK24923 PE=3 SV=1
Length = 998
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 85 LHFWCLNSGLVFSDIRES-ARSVILTSGTLAPVDSFQSELGTQFPIKLEANHVIDKDQVF 143
++FWC N G + + RSVILTSGTLAP+ +EL LE H++D+ QV+
Sbjct: 460 INFWCFNPGFGMEQLLNTQVRSVILTSGTLAPLKPLIAELAIPVAQHLENPHIVDQSQVY 519
Query: 144 IGVLGQG 150
+ ++G G
Sbjct: 520 VKIIGTG 526
>sp|B4L1Z2|RTEL1_DROMO Regulator of telomere elongation helicase 1 homolog OS=Drosophila
mojavensis GN=GI15901 PE=3 SV=1
Length = 1014
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 85 LHFWCLNSGLVFSDIRES-ARSVILTSGTLAPVDSFQSELGTQFPIKLEANHVIDKDQVF 143
++FWC N G + + RSVILTSGTLAP+ +EL LE H++D+ QV+
Sbjct: 455 INFWCFNPGFGMEQLLNTQVRSVILTSGTLAPLKPLIAELAIPVAQHLENPHIVDQSQVY 514
Query: 144 IGVLGQG 150
+ ++G G
Sbjct: 515 VKIIGTG 521
>sp|B4I0K4|RTEL1_DROSE Regulator of telomere elongation helicase 1 homolog OS=Drosophila
sechellia GN=GM12432 PE=3 SV=1
Length = 966
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 85 LHFWCLNSGLVFSDIRES-ARSVILTSGTLAPVDSFQSELGTQFPIKLEANHVIDKDQVF 143
++FWC N G + + RSVILTSGTLAP+ +EL LE H++D+ QV+
Sbjct: 435 INFWCFNPGFGMEQLLNTQVRSVILTSGTLAPLKPLIAELAIPVAQHLENPHIVDQSQVY 494
Query: 144 IGVLGQG 150
+ ++G G
Sbjct: 495 VKIIGTG 501
>sp|Q9W484|RTEL1_DROME Regulator of telomere elongation helicase 1 homolog OS=Drosophila
melanogaster GN=CG4078 PE=1 SV=1
Length = 985
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 85 LHFWCLNSGLVFSDIRES-ARSVILTSGTLAPVDSFQSELGTQFPIKLEANHVIDKDQVF 143
++FWC N G + + RSVILTSGTLAP+ +EL LE H++D+ QV+
Sbjct: 454 INFWCFNPGFGMEQLLNTQVRSVILTSGTLAPLKPLIAELAIPVAQHLENPHIVDQSQVY 513
Query: 144 IGVLGQG 150
+ ++G G
Sbjct: 514 VKIIGTG 520
>sp|B3NSW1|RTEL1_DROER Regulator of telomere elongation helicase 1 homolog OS=Drosophila
erecta GN=GG18780 PE=3 SV=1
Length = 985
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 85 LHFWCLNSGLVFSDIRES-ARSVILTSGTLAPVDSFQSELGTQFPIKLEANHVIDKDQVF 143
++FWC N G + + RSVILTSGTLAP+ +EL LE H++D+ QV+
Sbjct: 454 INFWCFNPGFGMEQLLNTQVRSVILTSGTLAPLKPLIAELAIPVAQHLENPHIVDQSQVY 513
Query: 144 IGVLGQG 150
+ ++G G
Sbjct: 514 VKIIGTG 520
>sp|B4GU19|RTEL1_DROPE Regulator of telomere elongation helicase 1 homolog OS=Drosophila
persimilis GN=GL14463 PE=3 SV=1
Length = 1009
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 85 LHFWCLNSGLVFSDIRES-ARSVILTSGTLAPVDSFQSELGTQFPIKLEANHVIDKDQVF 143
++FWC N G + + RSVILTSGTLAP+ +EL LE H++D+ QV+
Sbjct: 455 VNFWCFNPGFGMEQLLNTQVRSVILTSGTLAPLKPLIAELAIPVAQHLENPHIVDQSQVY 514
Query: 144 IGVLGQG 150
+ ++G G
Sbjct: 515 VKIIGTG 521
>sp|Q29FS3|RTEL1_DROPS Regulator of telomere elongation helicase 1 homolog OS=Drosophila
pseudoobscura pseudoobscura GN=GA17940 PE=3 SV=2
Length = 1009
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 85 LHFWCLNSGLVFSDIRES-ARSVILTSGTLAPVDSFQSELGTQFPIKLEANHVIDKDQVF 143
++FWC N G + + RSVILTSGTLAP+ +EL LE H++D+ QV+
Sbjct: 455 VNFWCFNPGFGMEQLLNTQVRSVILTSGTLAPLKPLIAELAIPVAQHLENPHIVDQSQVY 514
Query: 144 IGVLGQG 150
+ ++G G
Sbjct: 515 VKIIGTG 521
>sp|B4JNS2|RTEL1_DROGR Regulator of telomere elongation helicase 1 homolog OS=Drosophila
grimshawi GN=GH24089 PE=3 SV=1
Length = 986
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 85 LHFWCLNSGLVFSDIRES-ARSVILTSGTLAPVDSFQSELGTQFPIKLEANHVIDKDQVF 143
++FWC N G + + RSVILTSGTLAP+ +EL LE H++++ QV+
Sbjct: 455 INFWCFNPGFGMEQLLNTHVRSVILTSGTLAPLKPLIAELAIPVAQHLENPHIVNEAQVY 514
Query: 144 IGVLGQG 150
+ ++G G
Sbjct: 515 VKIIGTG 521
>sp|O08811|ERCC2_MOUSE TFIIH basal transcription factor complex helicase XPD subunit
OS=Mus musculus GN=Ercc2 PE=2 SV=2
Length = 760
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 75 DRTPMSIKYTLHFWCLNSGLVFSDIRESARSVILTSGTLAPVDSF 119
DRTP LHF C+++ L + E +SVI+TSGTL+P+D +
Sbjct: 423 DRTPTIANPVLHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIY 467
>sp|Q60452|ERCC2_CRIGR TFIIH basal transcription factor complex helicase XPD subunit
OS=Cricetulus griseus GN=ERCC2 PE=1 SV=1
Length = 760
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 75 DRTPMSIKYTLHFWCLNSGLVFSDIRESARSVILTSGTLAPVDSF 119
DRTP LHF C+++ L + E +SVI+TSGTL+P+D +
Sbjct: 423 DRTPTIANPILHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIY 467
>sp|P18074|ERCC2_HUMAN TFIIH basal transcription factor complex helicase XPD subunit
OS=Homo sapiens GN=ERCC2 PE=1 SV=1
Length = 760
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 75 DRTPMSIKYTLHFWCLNSGLVFSDIRESARSVILTSGTLAPVDSF 119
DRTP LHF C+++ L + E +SVI+TSGTL+P+D +
Sbjct: 423 DRTPTIANPILHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIY 467
>sp|A6QLJ0|ERCC2_BOVIN TFIIH basal transcription factor complex helicase XPD subunit
OS=Bos taurus GN=ERCC2 PE=2 SV=1
Length = 760
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 75 DRTPMSIKYTLHFWCLNSGLVFSDIRESARSVILTSGTLAPVDSF 119
DRTP LHF C+++ L + E +SVI+TSGTL+P+D +
Sbjct: 423 DRTPTIANPILHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIY 467
>sp|A7ERG1|CHL1_SCLS1 ATP-dependent RNA helicase CHL1 OS=Sclerotinia sclerotiorum (strain
ATCC 18683 / 1980 / Ss-1) GN=CHL1 PE=3 SV=1
Length = 902
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 39/94 (41%), Gaps = 15/94 (15%)
Query: 84 TLHFWCLNSGLVFSDIRESARSVILTSGTLAPVDSFQSELGTQFP----IKLEANHVIDK 139
TL F LN F I SAR++IL GT++P + S L P L HVI K
Sbjct: 533 TLKFQLLNPAPHFESIVSSARAIILAGGTMSPFSDYTSILFPSIPSHKITTLSCGHVIPK 592
Query: 140 DQVFIGVLGQGQKVFIGVLGQGPQNIPLQALYKN 173
+F + +GP IP + + N
Sbjct: 593 TH-----------LFASTVSRGPTGIPFKWTFAN 615
>sp|A7UXD4|CHL1_NEUCR ATP-dependent RNA helicase chl-1 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=chl-1 PE=3 SV=1
Length = 1073
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 85 LHFWCLNSGLVFSDIRESARSVILTSGTLAPVDSFQSELGTQFP----IKLEANHVIDKD 140
L + L+ FS I ESAR+VIL GT++P + +++ L P L HVI D
Sbjct: 685 LSYMLLSPTHAFSSIAESARAVILAGGTMSPFEDYKAHLFPDVPPEKITTLSCGHVIPPD 744
Query: 141 QVFIGVLG 148
+ + LG
Sbjct: 745 NLCVWTLG 752
>sp|A8WS58|RTEL1_CAEBR Regulator of telomere elongation helicase 1 homolog
OS=Caenorhabditis briggsae GN=rtel-1 PE=3 SV=1
Length = 994
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 71 WYRKDRTPMSIKYTLHFWCLNSGLVFSDIR-ESARSVILTSGTLAPVDSFQSELGTQFPI 129
+ RKD + IKY +C + + ++ R+V+L SGTL+P+ +F +G F
Sbjct: 453 YIRKDSGKLVIKY----FCFQASISMRMLKMRGVRNVLLASGTLSPIQAFTYNMGLNFGA 508
Query: 130 KLEANHVIDKDQVFIGVLGQGQ 151
LE H + + V ++ +G+
Sbjct: 509 ILENEHALKQVPVLTSIVTRGK 530
>sp|Q93575|RTEL1_CAEEL Regulator of telomere elongation helicase 1 homolog
OS=Caenorhabditis elegans GN=rtel-1 PE=3 SV=3
Length = 994
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 82 KYTLHFWCLNSGLVFSDIR-ESARSVILTSGTLAPVDSFQSELGTQFPIKLEANHVIDKD 140
K T+ ++C + + ++ R+V+L SGTL+P+ +F +G F LE H + +
Sbjct: 462 KLTIKYFCFQASISMRMLKMRGVRNVLLASGTLSPIQAFTYNMGLNFGAILENEHALKQV 521
Query: 141 QVFIGVLGQGQKVFIGVLGQGPQN 164
V ++ +G++ G L QN
Sbjct: 522 PVLTSIVTRGKR---GGLAGSFQN 542
>sp|A1CJ34|CHL1_ASPCL ATP-dependent RNA helicase chl1 OS=Aspergillus clavatus (strain
ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1)
GN=chl1 PE=3 SV=1
Length = 731
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 66 GESNRWYRKDRTPMSIKYTLHFWCLNSGLVFSDIRESARSVILTSGTLAPVDSFQSELGT 125
E +Y KD+ + +KY L L+ F +I E AR+VIL GT++P+ + + L
Sbjct: 394 AEGRLFYMKDQNDIQLKYLL----LDPTNHFREIVEDARAVILAGGTMSPMSDYMNHLFP 449
Query: 126 QFPIK----LEANHVIDKDQVFIGVLGQG 150
P HVI + + L QG
Sbjct: 450 YVPASRLDTFSYGHVIPPENLVAHTLAQG 478
>sp|A6ZWN8|CHL1_YEAS7 ATP-dependent RNA helicase CHL1 OS=Saccharomyces cerevisiae (strain
YJM789) GN=CHL1 PE=3 SV=1
Length = 861
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 83 YTLHFWCLNSGLVFSDIRESARSVILTSGTLAPVDSFQSELGTQFPIK----LEANHVID 138
Y++ + L F I A+ V+L GT+ P+ F S L + P K L NHVI
Sbjct: 556 YSIKYMLLEPSKPFESILNQAKCVVLAGGTMEPMSEFLSNLLPEVPSKDITTLSCNHVIP 615
Query: 139 KDQVFIGVLGQGQKVF 154
K+ + + Q + F
Sbjct: 616 KENLQTYITNQPELEF 631
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 8/45 (17%)
Query: 4 LSSRKHTCINDEVLKAK--ENINDLCQELKET-EG-----ESNRW 40
L+S+K CIN +V+K K E IND C +L+ + EG +N W
Sbjct: 273 LASKKQLCINPKVMKWKTLEAINDACADLRHSKEGCMFYQNTNEW 317
>sp|Q92771|DDX12_HUMAN Putative ATP-dependent RNA helicase DDX12 OS=Homo sapiens GN=DDX12P
PE=5 SV=3
Length = 950
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 84 TLHFWCLNSGLVFSDIRESARSVILTSGTLAPVDSFQSEL------GTQFPIKLEANHVI 137
TL F LN + F+ + + R+V++ GT+ PV +F+ +L + ++ HVI
Sbjct: 613 TLKFLLLNPAVHFAQVVKECRAVVIAGGTMQPVSNFRQQLLACAGVEAERVVEFSCGHVI 672
Query: 138 DKDQVFIGVLGQG 150
D + V+ G
Sbjct: 673 PPDNILPLVICSG 685
>sp|Q96FC9|DDX11_HUMAN Probable ATP-dependent RNA helicase DDX11 OS=Homo sapiens GN=DDX11
PE=1 SV=1
Length = 970
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Query: 84 TLHFWCLNSGLVFSDIRESARSVILTSGTLAPVDSFQSEL------GTQFPIKLEANHVI 137
TL F LN + F+ + + R+V++ GT+ PV F+ +L + ++ HVI
Sbjct: 594 TLKFLLLNPAVHFAQVVKECRAVVIAGGTMQPVSDFRQQLLACAGVEAERVVEFSCGHVI 653
Query: 138 DKDQVFIGVLGQG 150
D + V+ G
Sbjct: 654 PPDNILPLVICSG 666
>sp|A7TTL0|CHL1_VANPO ATP-dependent RNA helicase CHL1 OS=Vanderwaltozyma polyspora
(strain ATCC 22028 / DSM 70294) GN=CHL1 PE=3 SV=1
Length = 829
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 21/141 (14%)
Query: 31 KETEGESNRWYRKDRTPMR-GIEPVVSQGPHADEYQGESNRWYRKDRTPMSIKYTLHFWC 89
KE++ E+N + TP+ + +S + +E E ++ K++ SIKY L
Sbjct: 482 KESDNENNEESKNKSTPLLFKVASFLSSLTNPNE---EGKFFFEKNK---SIKYML---- 531
Query: 90 LNSGLVFSDIRESARSVILTSGTLAPVDSFQSELGTQFP-------IKLEANHVIDKDQV 142
L F I + AR VIL GT+ P+ F L FP + +HVI D +
Sbjct: 532 LEPSQSFKSILDEARCVILAGGTMEPISDFFDNL---FPDIIKDKSVTFACDHVIPDDNL 588
Query: 143 FIGVLGQGQKVFIGVLGQGPQ 163
++ + + F Q P+
Sbjct: 589 NTYIIEEPKFEFTFDKRQNPE 609
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 12/67 (17%)
Query: 4 LSSRKHTCINDEVL---KAKENINDLCQELKETE--------GESNRWYRKD-RTPMRGI 51
L SRK CIN + K+ E IND C+EL ++E SN +R T + I
Sbjct: 253 LGSRKQLCINKSITSKWKSTEAINDACKELLQSEKGCPYHNKNTSNTLFRDHVFTGVHDI 312
Query: 52 EPVVSQG 58
E +++ G
Sbjct: 313 EDILALG 319
>sp|P26659|RAD15_SCHPO DNA repair helicase rad15 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rad15 PE=1 SV=2
Length = 772
Score = 38.9 bits (89), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 85 LHFWCLNSGLVFSDIRESARSVILTSGTLAPVDSFQSEL 123
L F CL++ + + E RSVI+TSGTL+P+D + L
Sbjct: 432 LRFSCLDASIAIKPVFERFRSVIITSGTLSPLDMYPKML 470
>sp|P22516|CHL1_YEAST ATP-dependent RNA helicase CHL1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=CHL1 PE=1 SV=1
Length = 861
Score = 37.7 bits (86), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Query: 83 YTLHFWCLNSGLVFSDIRESARSVILTSGTLAPVDSFQSELGTQFP----IKLEANHVID 138
Y++ + L F I A+ V+L GT+ P+ F S L + P L NHVI
Sbjct: 556 YSIKYMLLEPSKPFESILNQAKCVVLAGGTMEPMSEFLSNLLPEVPSEDITTLSCNHVIP 615
Query: 139 KDQVFIGVLGQGQKVF 154
K+ + + Q + F
Sbjct: 616 KENLQTYITNQPELEF 631
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 8/45 (17%)
Query: 4 LSSRKHTCINDEVLKAK--ENINDLCQELKET-EG-----ESNRW 40
L+S+K CIN +V+K K E IND C +L+ + EG +N W
Sbjct: 273 LASKKQLCINPKVMKWKTLEAINDACADLRHSKEGCIFYQNTNEW 317
>sp|A3LN13|CHL1_PICST ATP-dependent RNA helicase CHL1 OS=Scheffersomyces stipitis (strain
ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545)
GN=CHL1 PE=3 SV=2
Length = 835
Score = 37.4 bits (85), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 14/70 (20%)
Query: 80 SIKYTLHFWCLNSGLVFSDIRESARSVILTSGTLAPVDSFQSELGTQFPI-------KLE 132
SIKY L L+ VF DI AR VIL GT+ P+ F++ L FP
Sbjct: 525 SIKYML----LDPSSVFKDIVSKARCVILCGGTMEPMSEFKNFL---FPYVEDKKIKSFS 577
Query: 133 ANHVIDKDQV 142
NH+I D +
Sbjct: 578 CNHIIPPDNL 587
>sp|A8MPP1|D11L8_HUMAN Putative ATP-dependent RNA helicase DDX11-like protein 8 OS=Homo
sapiens GN=DDX11L8 PE=3 SV=1
Length = 907
Score = 37.4 bits (85), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 84 TLHFWCLNSGLVFSDIRESARSVILTSGTLAPVDSFQSEL------GTQFPIKLEANHVI 137
TL F LN + F+ + + R+V++ GT+ PV F+ +L + ++ HVI
Sbjct: 596 TLKFLLLNPAVHFAQVVKECRAVVIAGGTMQPVSDFRQQLLACAGVEAERVVEFSCGHVI 655
Query: 138 DKDQV 142
D +
Sbjct: 656 PPDNI 660
>sp|Q6FKT4|CHL1_CANGA ATP-dependent RNA helicase CHL1 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=CHL1 PE=3 SV=1
Length = 830
Score = 37.0 bits (84), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 84 TLHFWCLNSGLVFSDIRESARSVILTSGTLAPVDSFQSELGTQFP----IKLEANHVIDK 139
+L + L +F DI +SAR VIL GT+ PV L + K NHVI
Sbjct: 528 SLRYMLLEPSRIFQDIIDSARCVILAGGTMEPVSQLLQYLVPKLDDSSITKFSCNHVIPD 587
Query: 140 DQVFIGVLGQGQKVF 154
+ ++ + Q F
Sbjct: 588 SHLRTYIVNEPQFEF 602
>sp|A2QY22|CHL1_ASPNC ATP-dependent RNA helicase chl1 OS=Aspergillus niger (strain CBS
513.88 / FGSC A1513) GN=chl1 PE=3 SV=1
Length = 874
Score = 36.6 bits (83), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
Query: 66 GESNRWYRKDRTPMSIKYTLHFWCLNSGLVFSDIRESARSVILTSGTLAPVDSFQSELGT 125
E +Y K++ + +KY L L+ F ++ E AR++IL GT++P+ + + L +
Sbjct: 539 AEGRLFYSKEQGDIQLKYML----LDPTNQFRELVEDARAIILAGGTMSPMTDYMNHLFS 594
Query: 126 QFPIK----LEANHVIDKDQVFIGVLGQG 150
P HVI + + L +G
Sbjct: 595 YVPASRLDTFSYGHVIPPENLIAHTLVRG 623
>sp|Q2U587|CHL1_ASPOR ATP-dependent RNA helicase chl1 OS=Aspergillus oryzae (strain ATCC
42149 / RIB 40) GN=chl1 PE=3 SV=1
Length = 721
Score = 36.6 bits (83), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 66 GESNRWYRKDRTPMSIKYTLHFWCLNSGLVFSDIRESARSVILTSGTLAPVDSFQSELGT 125
E +Y K + + +KY L L+ F +I + AR+VIL GT++P+ + L
Sbjct: 396 AEGKLFYIKAQGDIQLKYML----LDPMNQFREIVDDARAVILAGGTMSPMTDYIHHLFP 451
Query: 126 QFPIK----LEANHVIDKDQVFIGVLGQG 150
P HVI + + VLG+G
Sbjct: 452 YVPSSRLGTFSYGHVIPPENLIAQVLGKG 480
>sp|Q55G81|ERCC2_DICDI TFIIH basal transcription factor complex helicase repD subunit
OS=Dictyostelium discoideum GN=repD PE=2 SV=1
Length = 776
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 35/66 (53%)
Query: 85 LHFWCLNSGLVFSDIRESARSVILTSGTLAPVDSFQSELGTQFPIKLEANHVIDKDQVFI 144
F CL++ + I + RSV++TSGTL+P+D + L + + ++++ +
Sbjct: 426 FQFCCLDASIGMKPIFDKYRSVVITSGTLSPLDIYTKMLNFRPTVVERLTMSLNRNCICP 485
Query: 145 GVLGQG 150
+L +G
Sbjct: 486 CILTRG 491
>sp|P06839|RAD3_YEAST DNA repair helicase RAD3 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RAD3 PE=1 SV=1
Length = 778
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 85 LHFWCLNSGLVFSDIRESARSVILTSGTLAPVDSF 119
+ F CL++ + + E SVI+TSGT++P+D +
Sbjct: 435 MRFTCLDASIAIKPVFERFSSVIITSGTISPLDMY 469
>sp|A5DUW8|CHL1_LODEL ATP-dependent RNA helicase CHL1 OS=Lodderomyces elongisporus
(strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 /
NRRL YB-4239) GN=CHL1 PE=3 SV=1
Length = 892
Score = 35.0 bits (79), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 10/73 (13%)
Query: 84 TLHFWCLNSGLVFSDIRESARSVILTSGTLAPVDSFQSELGTQFPI-------KLEANHV 136
+L++ L+ VF +I + A+ VIL GT+ P F L FP K H+
Sbjct: 583 SLNYMLLDPCAVFKEIVDQAKCVILCGGTMEPTSDFTDYL---FPSIKHNKIKKFACGHI 639
Query: 137 IDKDQVFIGVLGQ 149
I K+ + + +GQ
Sbjct: 640 IPKNNLKVIPVGQ 652
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 24/33 (72%), Gaps = 2/33 (6%)
Query: 4 LSSRKHTCINDEV--LKAKENINDLCQELKETE 34
L SRK CIND+V K +++IND C +L++T+
Sbjct: 295 LGSRKQLCINDKVKNRKGEQSINDACIDLQKTK 327
>sp|A5DNW6|CHL1_PICGU ATP-dependent RNA helicase CHL1 OS=Meyerozyma guilliermondii
(strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC
10279 / NRRL Y-324) GN=CHL1 PE=3 SV=2
Length = 825
Score = 34.3 bits (77), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 81 IKYTLHFWCLNSGLVFSDIRESARSVILTSGTLAPVDSFQSELGTQFP----IKLEANHV 136
IKY L L+ +F D+ ESAR V+L GT+ PV+ + L P K H+
Sbjct: 519 IKYLL----LDPSEMFRDVVESARCVLLCGGTMEPVEDYYRYLFPYVPGEKIKKFTCGHI 574
Query: 137 IDKDQV 142
+ ++ +
Sbjct: 575 VPQENI 580
>sp|A1D8E4|CHL1_NEOFI ATP-dependent RNA helicase chl1 OS=Neosartorya fischeri (strain
ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=chl1
PE=3 SV=1
Length = 861
Score = 34.3 bits (77), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 66 GESNRWYRKDRTPMSIKYTLHFWCLNSGLVFSDIRESARSVILTSGTLAPVDSFQSELGT 125
E +Y K + +KY L L+ F +I E AR+VIL GT++P+ +++ L +
Sbjct: 525 AEGRFFYLKFHDDIQLKYML----LDPTNHFREIVEDARAVILAGGTMSPMSDYRNHLFS 580
Query: 126 QF-PIKLEA---NHVIDKDQVFIGVLGQG 150
P +L+ HVI + + L G
Sbjct: 581 YIAPSRLDTFSYGHVIPPENLIAHTLVNG 609
>sp|Q6BZD9|CHL1_DEBHA ATP-dependent RNA helicase CHL1 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=CHL1 PE=3 SV=2
Length = 820
Score = 34.3 bits (77), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 75 DRTPMSIKYTLHFWCLNSGLVFSDIRESARSVILTSGTLAPVDSFQSELGTQFP----IK 130
D+T S+ ++++ L+ +F DI + AR V+L GT+ P++ + + L P K
Sbjct: 504 DKTNDSV--SINYMLLDPSEIFRDIVKRARCVLLCGGTMEPMNDYTNYLFPYIPPEQIKK 561
Query: 131 LEANHVIDKDQVFIGVLG 148
H+I ++ + + +G
Sbjct: 562 FSCGHIIPQENLEVFPIG 579
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,794,480
Number of Sequences: 539616
Number of extensions: 2738645
Number of successful extensions: 6343
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 6243
Number of HSP's gapped (non-prelim): 101
length of query: 179
length of database: 191,569,459
effective HSP length: 110
effective length of query: 69
effective length of database: 132,211,699
effective search space: 9122607231
effective search space used: 9122607231
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)