Query psy876
Match_columns 179
No_of_seqs 161 out of 647
Neff 5.1
Searched_HMMs 13730
Date Fri Aug 16 18:33:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy876.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/876hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2p6ra3 c.37.1.19 (A:1-202) He 42.7 5.7 0.00042 28.5 2.2 22 105-126 174-195 (202)
2 d1oywa2 c.37.1.19 (A:1-206) Re 27.4 18 0.0013 25.5 2.8 24 105-128 176-201 (206)
3 d2cula1 c.3.1.7 (A:2-231) GidA 13.1 29 0.0021 26.4 1.0 13 102-114 112-124 (230)
4 d2cqea2 g.66.1.1 (A:429-457) Z 12.7 6.9 0.00051 21.2 -2.0 23 22-44 4-29 (29)
5 d1rkqa_ c.108.1.10 (A:) Hypoth 9.4 1.4E+02 0.01 20.8 3.9 35 94-128 28-63 (271)
6 d1nrwa_ c.108.1.10 (A:) Hypoth 9.4 92 0.0067 22.0 2.8 42 95-136 26-68 (285)
7 d2piaa2 c.25.1.2 (A:104-223) P 9.1 44 0.0032 21.2 0.7 20 104-123 10-30 (120)
8 d1rgoa2 g.66.1.1 (A:187-220) B 8.8 18 0.0013 19.9 -1.3 24 22-45 6-33 (34)
9 d2naca2 c.23.12.1 (A:1-147,A:3 8.8 2.5E+02 0.018 20.4 5.2 85 37-125 4-89 (186)
10 d1rgoa1 g.66.1.1 (A:151-186) B 8.7 14 0.00099 20.6 -1.8 24 22-45 4-31 (36)
No 1
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=42.72 E-value=5.7 Score=28.46 Aligned_cols=22 Identities=27% Similarity=0.166 Sum_probs=18.9
Q ss_pred eeEEeccccCChHhHHHhhCCC
Q psy876 105 SVILTSGTLAPVDSFQSELGTQ 126 (179)
Q Consensus 105 SVILtSGTLsPi~~f~~~Lg~~ 126 (179)
-+|++|+||.+.+++.+-|+.+
T Consensus 174 ~~l~lSATl~n~~~~~~~l~~~ 195 (202)
T d2p6ra3 174 RVIGLSATAPNVTEIAEWLDAD 195 (202)
T ss_dssp EEEEEECCCTTHHHHHHHTTCE
T ss_pred cEEEEcCCCCcHHHHHHHcCCC
Confidence 4899999999999999988763
No 2
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}
Probab=27.42 E-value=18 Score=25.51 Aligned_cols=24 Identities=17% Similarity=0.194 Sum_probs=19.3
Q ss_pred eeEEeccccCCh--HhHHHhhCCCCC
Q psy876 105 SVILTSGTLAPV--DSFQSELGTQFP 128 (179)
Q Consensus 105 SVILtSGTLsPi--~~f~~~Lg~~f~ 128 (179)
-+|+.|+||.|- ++..+.||+..|
T Consensus 176 ~ii~lSATl~~~v~~di~~~L~l~~p 201 (206)
T d1oywa2 176 PFMALTATADDTTRQDIVRLLGLNDP 201 (206)
T ss_dssp CEEEEESCCCHHHHHHHHHHHTCCSC
T ss_pred ceEEEEeCCCHHHHHHHHHHcCCCCC
Confidence 388899999983 678888988665
No 3
>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}
Probab=13.14 E-value=29 Score=26.44 Aligned_cols=13 Identities=23% Similarity=0.508 Sum_probs=11.6
Q ss_pred hcceeEEeccccC
Q psy876 102 SARSVILTSGTLA 114 (179)
Q Consensus 102 ~arSVILtSGTLs 114 (179)
.+++||||-||..
T Consensus 112 ~AkaVILtTGTFL 124 (230)
T d2cula1 112 RGEKVVLAVGSFL 124 (230)
T ss_dssp ECSEEEECCTTCS
T ss_pred EEeEEEEccCcce
Confidence 6999999999974
No 4
>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.68 E-value=6.9 Score=21.20 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=16.3
Q ss_pred CHHHHHHHhhh---ccCccceEeccC
Q psy876 22 NINDLCQELKE---TEGESNRWYRKD 44 (179)
Q Consensus 22 ~~~~~c~~~~~---~~~~~c~~~~~~ 44 (179)
.|.|+||=-+. +.|..|.|-|++
T Consensus 4 kkkelCKfYvqGyCtrgenC~ymH~e 29 (29)
T d2cqea2 4 KKRELCKFYITGFCARAENCPYMHGD 29 (29)
T ss_dssp CCCSBCTTTTTTCCSCSTTCSSBSSS
T ss_pred hhhhhhhhheeeeecCCcCcccccCC
Confidence 45567777666 678888887764
No 5
>d1rkqa_ c.108.1.10 (A:) Hypothetical protein YidA {Escherichia coli [TaxId: 562]}
Probab=9.39 E-value=1.4e+02 Score=20.76 Aligned_cols=35 Identities=29% Similarity=0.426 Sum_probs=24.7
Q ss_pred HHHHHHHhhcceeEEecc-ccCChHhHHHhhCCCCC
Q psy876 94 LVFSDIRESARSVILTSG-TLAPVDSFQSELGTQFP 128 (179)
Q Consensus 94 ~~f~~I~~~arSVILtSG-TLsPi~~f~~~Lg~~f~ 128 (179)
.+++.+.+....+++++| ++..+..+...|++.++
T Consensus 28 ~al~~L~~~gi~v~i~TGR~~~~~~~~~~~l~l~~~ 63 (271)
T d1rkqa_ 28 NAIAAARARGVNVVLTTGRPYAGVHNYLKELHMEQP 63 (271)
T ss_dssp HHHHHHHHTTCEEEEECSSCGGGTHHHHHHTTCCST
T ss_pred HHHHHHHHCCCEEEEECCCCHHHHHHHHHHhcCcCC
Confidence 366666655556666666 88888888888887553
No 6
>d1nrwa_ c.108.1.10 (A:) Hypothetical protein YwpJ {Bacillus subtilis [TaxId: 1423]}
Probab=9.36 E-value=92 Score=21.99 Aligned_cols=42 Identities=17% Similarity=0.184 Sum_probs=27.9
Q ss_pred HHHHHHhhcceeEEecc-ccCChHhHHHhhCCCCCeEEEeCCc
Q psy876 95 VFSDIRESARSVILTSG-TLAPVDSFQSELGTQFPIKLEANHV 136 (179)
Q Consensus 95 ~f~~I~~~arSVILtSG-TLsPi~~f~~~Lg~~f~~~ls~~HV 136 (179)
+++.+.+...-+++++| ++.-+..+...|+.+.++...++.+
T Consensus 26 ~l~~l~~~Gi~~~i~TGR~~~~~~~~~~~l~~~~~~i~~nG~~ 68 (285)
T d1nrwa_ 26 ALRQAQRDGIEVVVSTGRAHFDVMSIFEPLGIKTWVISANGAV 68 (285)
T ss_dssp HHHHHHHTTCEEEEECSSCHHHHHHHHGGGTCCCEEEEGGGTE
T ss_pred HHHHHHHCCCEEEEECCCCHHHHHHHHHHhCCCcEEEecCcee
Confidence 56666666566777777 7777777888888765555455544
No 7
>d2piaa2 c.25.1.2 (A:104-223) Phthalate dioxygenase reductase {Pseudomonas cepacia, db01 [TaxId: 292]}
Probab=9.07 E-value=44 Score=21.19 Aligned_cols=20 Identities=20% Similarity=0.491 Sum_probs=16.5
Q ss_pred ceeEEeccc-cCChHhHHHhh
Q psy876 104 RSVILTSGT-LAPVDSFQSEL 123 (179)
Q Consensus 104 rSVILtSGT-LsPi~~f~~~L 123 (179)
+-|++++|| ++|+-.+.+.|
T Consensus 10 ~~v~IagGtGiaP~~s~~~~l 30 (120)
T d2piaa2 10 SFILVAGGIGITPMLSMARQL 30 (120)
T ss_dssp EEEEEEEGGGHHHHHHHHHHH
T ss_pred CEEEEEecccHHHHHHHHHHH
Confidence 557888898 99998888776
No 8
>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.79 E-value=18 Score=19.95 Aligned_cols=24 Identities=13% Similarity=0.347 Sum_probs=18.6
Q ss_pred CHHHHHHHhhh----ccCccceEeccCC
Q psy876 22 NINDLCQELKE----TEGESNRWYRKDR 45 (179)
Q Consensus 22 ~~~~~c~~~~~----~~~~~c~~~~~~~ 45 (179)
-|.++|+.... ..|..|.|-|...
T Consensus 6 yKT~lC~~f~~~g~C~yG~~C~FaHg~~ 33 (34)
T d1rgoa2 6 YKTELCRTFHTIGFCPYGPRCHFIHNAD 33 (34)
T ss_dssp TTCSBCHHHHHHSCCTTGGGCSSBCCSC
T ss_pred ccchhccccCCCCcCCCCCcccCcCCCC
Confidence 45678998766 6899999988753
No 9
>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}
Probab=8.79 E-value=2.5e+02 Score=20.38 Aligned_cols=85 Identities=15% Similarity=0.105 Sum_probs=55.8
Q ss_pred cceEeccCCCCCCCCCccccCCCChhhhhhhccccccccCCCCCCCeEEEEEecChHHHHHHHH-hhcceeEEeccccCC
Q psy876 37 SNRWYRKDRTPMRGIEPVVSQGPHADEYQGESNRWYRKDRTPMSIKYTLHFWCLNSGLVFSDIR-ESARSVILTSGTLAP 115 (179)
Q Consensus 37 ~c~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~L~~~cLdPs~~f~~I~-~~arSVILtSGTLsP 115 (179)
-|..|++-..-+-+-- .....|++..|-..++-+...+..+..... +=|..-...+++++ +..+.+|.++.+-.|
T Consensus 4 ~~~~~~~~~~g~p~~y-~~~~~p~i~~~pdg~t~p~p~~~~~~~~~l---~g~v~~~lglr~~Le~~GhelV~~sd~~~~ 79 (186)
T d2naca2 4 LCVLYDDPVDGYPKTY-ARDDLPKIDHYPGGQTLPTPKAIDFTPGQL---LGSVSGELGLRKYLESNGHTLVVTSDKDGP 79 (186)
T ss_dssp EEECBCCCTTCSCSCC-SCSCCCCCCBCTTSCBCCCCSCCSSCTTSC---CSBTTTGGGCHHHHHHTTCEEEEESCCSST
T ss_pred EEEeccCCCCCCCCcc-ccccCCcceecCCCCcCCCccccccccchh---cccccchhhHHHHHHHCCCEEEEecCCCCC
Confidence 4888875444332221 223455667777776666555553333222 12777788888887 589999999999999
Q ss_pred hHhHHHhhCC
Q psy876 116 VDSFQSELGT 125 (179)
Q Consensus 116 i~~f~~~Lg~ 125 (179)
-+++.+.|.-
T Consensus 80 ~~el~k~l~D 89 (186)
T d2naca2 80 DSVFERELVD 89 (186)
T ss_dssp TSHHHHHHTT
T ss_pred hHHHHhhccc
Confidence 9999888853
No 10
>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.66 E-value=14 Score=20.60 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=17.7
Q ss_pred CHHHHHHHhhh----ccCccceEeccCC
Q psy876 22 NINDLCQELKE----TEGESNRWYRKDR 45 (179)
Q Consensus 22 ~~~~~c~~~~~----~~~~~c~~~~~~~ 45 (179)
-|.++|+.... ..|..|.|-|..+
T Consensus 4 yKT~lC~~~~~~g~C~~G~~C~FAHg~~ 31 (36)
T d1rgoa1 4 YKTELCRPFEESGTCKYGEKCQFAHGFH 31 (36)
T ss_dssp TTSSBCHHHHHHSCCTTGGGCSSBSSGG
T ss_pred cchhhCcchhcCCcCCCCCcCCCcCCHH
Confidence 35678887655 6889999988653
Done!