RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy876
         (179 letters)



>d1zcza1 c.24.1.3 (A:1-157) IMP cyclohydrolase domain of
          bifunctional purine biosynthesis enzyme ATIC
          {Thermotoga maritima [TaxId: 2336]}
          Length = 157

 Score = 25.4 bits (55), Expect = 3.6
 Identities = 6/50 (12%), Positives = 15/50 (30%), Gaps = 6/50 (12%)

Query: 20 KENINDLCQELKE------TEGESNRWYRKDRTPMRGIEPVVSQGPHADE 63
          KE   D+ +EL E          + ++ + +      +  +         
Sbjct: 11 KEKYLDILRELHEKGWEIWASSGTAKFLKSNGIEANDVSTITGFENLLGG 60


>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo
           sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20
           [TaxId: 9606]}
          Length = 173

 Score = 25.2 bits (54), Expect = 4.0
 Identities = 33/158 (20%), Positives = 43/158 (27%), Gaps = 25/158 (15%)

Query: 13  NDEVLKAKENINDLCQELKETEGESNRWYRKDRTPMRGIEPVVSQGPHADEYQGESNRWY 72
            D V K  EN    C      +G    +  K  T  R I+  + QG       G      
Sbjct: 29  ADVVPKTAENFRQFCTGEFRKDGVPIGY--KGSTFHRVIKDFMIQGGDFVNGDGTGVASI 86

Query: 73  RKDRTPMSIKYTLHFWCLNSGLVFSDIRESARSVILTSGTLAPVDSFQSELGTQFPIKLE 132
            +           H                        G L+  +S  S  G QF I   
Sbjct: 87  YRGPFADENFKLRHSAP---------------------GLLSMANSGPSTNGCQFFITCS 125

Query: 133 ANHVIDKDQVFIGVLGQGQKVF--IGVLGQGPQNIPLQ 168
               +D   V  G +  G  V   I  +  GP N P  
Sbjct: 126 KCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKL 163


>d1i3ja_ d.285.1.1 (A:) DNA-binding domain of intron endonuclease
           I-TevI {Bacteriophage T4 [TaxId: 10665]}
          Length = 96

 Score = 24.4 bits (53), Expect = 4.8
 Identities = 12/87 (13%), Positives = 28/87 (32%), Gaps = 21/87 (24%)

Query: 27  CQELKETEGESNRWYRKDRTPMRGIEPVVSQGPHADEYQGESNRWYRKDRTPMSIKYTLH 86
           C + +   GE+N ++    +                    E     +  +     K +  
Sbjct: 16  CSKCRNRSGENNSFFNHKHS------------DITKSKISEKM---KGKKPSNIKKISCD 60

Query: 87  FWCLNSGLVFSDIRESARSVILTSGTL 113
                 G++F    ++AR   ++SG +
Sbjct: 61  ------GVIFDCAADAARHFKISSGLV 81


>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus
           scrofa) [TaxId: 9823]}
          Length = 195

 Score = 24.9 bits (54), Expect = 5.2
 Identities = 6/24 (25%), Positives = 14/24 (58%)

Query: 14  DEVLKAKENINDLCQELKETEGES 37
            E  +A+E++  L ++ +E   +S
Sbjct: 171 GEFSEAREDMAALEKDYEEVGVDS 194


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.135    0.405 

Gapped
Lambda     K      H
   0.267   0.0544    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 631,150
Number of extensions: 26709
Number of successful extensions: 59
Number of sequences better than 10.0: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 6
Length of query: 179
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 99
Effective length of database: 1,309,196
Effective search space: 129610404
Effective search space used: 129610404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.5 bits)