BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8763
(641 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 103/374 (27%), Positives = 171/374 (45%), Gaps = 27/374 (7%)
Query: 156 PLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLV 215
PLH A G V+ L+ GA + + TP+H+A G ++ + + LQ K+
Sbjct: 17 PLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYL--LQNKAKV- 73
Query: 216 CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKT--- 272
N+ TPLHCAA ++V+ L++ A+ N+ +PL +AA G +T
Sbjct: 74 --NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLA 131
Query: 273 ---NGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIY 329
+ + K LH+A + KV + +LL+ + G++G T LH+A +
Sbjct: 132 LLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN--AAGKNGLTPLHVAVHH 189
Query: 330 DFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISL 389
+ + ++L+ G S NGY P+H AAK + LQ+G G + E +
Sbjct: 190 NNLDIVKLLLPR-GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYG---GSANAESV-- 243
Query: 390 FAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNL 449
+G PLH A G + V L L A + TP+HL +G + + ++
Sbjct: 244 ---QGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLI-- 298
Query: 450 QPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 509
+ V +++T TPLH A+ + +V++L+ AD+N K SPL AA +G
Sbjct: 299 ---KHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQG 355
Query: 510 GWKTVLTLVRNKAN 523
V L++N A+
Sbjct: 356 HTDIVTLLLKNGAS 369
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 107/399 (26%), Positives = 169/399 (42%), Gaps = 58/399 (14%)
Query: 225 MTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKK 284
+TPLH A+ +V+ L+ GA NV + + +PL +AA G
Sbjct: 15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAG---------------- 58
Query: 285 QAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGA 344
TE+ K LLQ K ++ + +T LH AA ++L+++ A
Sbjct: 59 ------HTEVAK-----YLLQNKAKVN--AKAKDDQTPLHCAARIGHTNMVKLLLEN-NA 104
Query: 345 SLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHG 404
+ A + G+ P+H AA+ +T+ L+ S C +G PLH A
Sbjct: 105 NPNLATTAGHTPLHIAAREGHVETVLALLEKEASQAC--------MTKKGFTPLHVAAKY 156
Query: 405 GDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQ 464
G + EL L+ A + + TP+H+A LDIV+L+ S N
Sbjct: 157 GKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNG---- 212
Query: 465 KMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANI 524
TPLH AA ++ +V + L+ G N + +PL LAA G + V L+ +AN
Sbjct: 213 -YTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG 271
Query: 525 LLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAA 584
L + + LHL+ G V + + LI G ++ +PLH+A+
Sbjct: 272 NLGNKSGLTPLHLVAQEG------------HVPVADVLIKHGVMVDATTRMGYTPLHVAS 319
Query: 585 RYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
YG VK LL + +N G +PLH A+++G
Sbjct: 320 HYGNIKLVKFLLQHQAD---VNAKTKLGYSPLHQAAQQG 355
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 91/363 (25%), Positives = 150/363 (41%), Gaps = 36/363 (9%)
Query: 22 GVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDE 81
G + + N K + LH+A + LLQ K ++ + +T LH AA
Sbjct: 37 GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN--AKAKDDQTPLHCAARIGHTN 94
Query: 82 CARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCS 141
++L+ A+ A + G+ P+H AA+ +T+ L+ S C
Sbjct: 95 MVKLLLENN------------ANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQAC- 141
Query: 142 REEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDI 201
+G PLH A G + EL L+ A + + TP+H+A LDI
Sbjct: 142 -------MTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDI 194
Query: 202 VRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPL 261
V+L+ S N TPLH AA ++ +V + L+ G N + +PL
Sbjct: 195 VKLLLPRGGSPHSPAWNG-----YTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPL 249
Query: 262 LLAASRGGWK------TNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQG 315
LAA G + + N + N LHL + VP+ +L+++ M+D
Sbjct: 250 HLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATT- 308
Query: 316 GEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQF 375
G T LH+A+ Y + + L++ A + GY P+H AA+ + + + L+
Sbjct: 309 -RMGYTPLHVASHYGNIKLVKFLLQ-HQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKN 366
Query: 376 GES 378
G S
Sbjct: 367 GAS 369
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 94/227 (41%), Gaps = 30/227 (13%)
Query: 36 LHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDW 95
LH+A + N+V + LLQY + G T LH+AA E +L+S+Q +
Sbjct: 216 LHIAAKQNQVEVARSLLQYGGSAN--AESVQGVTPLHLAAQEGHAEMVALLLSKQANGNL 273
Query: 96 IMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNL 155
+G P+H A+ +V ++ G M+ G
Sbjct: 274 ------------GNKSGLTPLHLVAQEGHVPVADVLIKHG--------VMVDATTRMGYT 313
Query: 156 PLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLV 215
PLH A H G+ K V+ L+ A ++ + +P+H A QG DIV L+ S V
Sbjct: 314 PLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEV 373
Query: 216 CLNSTDAQKMTPLHCA---AMFDRCDVVQYLIDEGADLNVLDKEKRS 259
+ T TPL A DV++ + DE + + V DK + S
Sbjct: 374 SSDGT-----TPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMS 415
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 14/118 (11%)
Query: 20 SSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDF 79
S N + N LHL + VP+ +L+++ M+D G T LH+A+ Y
Sbjct: 266 SKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATT--RMGYTPLHVASHYGN 323
Query: 80 DECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGES 137
+ + L+ Q D A K GY P+H AA+ + + + L+ G S
Sbjct: 324 IKLVKFLLQHQ--------ADVNAKTKL----GYSPLHQAAQQGHTDIVTLLLKNGAS 369
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
Query: 578 SPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIF 631
+PLH+A+ G VK LL +RG+ N S+ + TPLH+A++ G H V+ +
Sbjct: 16 TPLHVASFMGHLPIVKNLL--QRGAS-PNVSNVKVETPLHMAARAG-HTEVAKY 65
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 79/151 (52%), Gaps = 13/151 (8%)
Query: 118 DAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGA 177
+AA+N + ++ ++ G + S D++G PLH A G + V+L + GA
Sbjct: 10 EAAENGNKDRVKDLIENGADVNAS--------DSDGRTPLHHAAENGHKEVVKLLISKGA 61
Query: 178 KISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRC 237
++ + D TP+H A G ++V+L+ + K +N+ D+ TPLH AA
Sbjct: 62 DVNAKDSDGRTPLHHAAENGHKEVVKLLIS-----KGADVNAKDSDGRTPLHHAAENGHK 116
Query: 238 DVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
+VV+ LI +GAD+N D + R+PL LA G
Sbjct: 117 EVVKLLISKGADVNTSDSDGRTPLDLAREHG 147
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 82/161 (50%), Gaps = 13/161 (8%)
Query: 359 DAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGA 418
+AA+N + ++ ++ G + S ++G PLH A G + V+L + GA
Sbjct: 10 EAAENGNKDRVKDLIENGADVNASD--------SDGRTPLHHAAENGHKEVVKLLISKGA 61
Query: 419 KISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRC 478
++ + D TP+H A G ++V+L+ + K +N+ D+ TPLH AA
Sbjct: 62 DVNAKDSDGRTPLHHAAENGHKEVVKLLIS-----KGADVNAKDSDGRTPLHHAAENGHK 116
Query: 479 DVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVR 519
+VV+ LI +GAD+N D + R+PL LA G + V L +
Sbjct: 117 EVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEK 157
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 73/142 (51%), Gaps = 5/142 (3%)
Query: 401 AVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNS 460
A G+ V+ +++GA ++ D TP+H A G ++V+L+ + K +N+
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLIS-----KGADVNA 65
Query: 461 TDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRN 520
D+ TPLH AA +VV+ LI +GAD+N D + R+PL AA G + V L+
Sbjct: 66 KDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISK 125
Query: 521 KANILLKDINRRNILHLLVLNG 542
A++ D + R L L +G
Sbjct: 126 GADVNTSDSDGRTPLDLAREHG 147
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 81/168 (48%), Gaps = 18/168 (10%)
Query: 434 ACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNV 493
A G D V+ + E +N++D+ TPLH AA +VV+ LI +GAD+N
Sbjct: 11 AAENGNKDRVKDLI-----ENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNA 65
Query: 494 LDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEV 553
D + R+PL AA G + V L+ A++ KD + R LH NG +EV
Sbjct: 66 KDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENG-------HKEV 118
Query: 554 AAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERG 601
+ LI+ GA +N ++ +PL LA +G V KLL + G
Sbjct: 119 VKL-----LISKGADVNTSDSDGRTPLDLAREHGNEEVV-KLLEKQGG 160
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 24/157 (15%)
Query: 53 QYKDMI----DILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRA 108
+ KD+I D+ GRT LH AA E ++L+S+ GA +
Sbjct: 19 RVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISK------------GADVNAK 66
Query: 109 CSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKA 168
S+G P+H AA+N + +++ + G + D++G PLH A G +
Sbjct: 67 DSDGRTPLHHAAENGHKEVVKLLISKGADVNAK--------DSDGRTPLHHAAENGHKEV 118
Query: 169 VELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLM 205
V+L + GA ++T D TP+ LA G ++V+L+
Sbjct: 119 VKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 78/188 (41%), Gaps = 38/188 (20%)
Query: 231 AAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHL 290
AA D V+ LI+ GAD+N D + R+PL AA G
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENG---------------------- 48
Query: 291 ATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRAC 350
+K + L++ + D+ GRT LH AA E ++L+ GA +
Sbjct: 49 ----HKEVVKLLISKG---ADVNAKDSDGRTPLHHAAENGHKEVVKLLIS-KGADVNAKD 100
Query: 351 SNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAV 410
S+G P+H AA+N + +++ + G + S ++G PL A G+ + V
Sbjct: 101 SDGRTPLHHAAENGHKEVVKLLISKGADVNTSD--------SDGRTPLDLAREHGNEEVV 152
Query: 411 ELCLKSGA 418
+L K G
Sbjct: 153 KLLEKQGG 160
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 80/151 (52%), Gaps = 13/151 (8%)
Query: 118 DAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGA 177
+AA+N + ++ ++ G + S D++G PLH A G + V+L + GA
Sbjct: 10 EAAENGNKDRVKDLIENGADVNAS--------DSDGRTPLHYAAKEGHKEIVKLLISKGA 61
Query: 178 KISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRC 237
++ + D TP+H A +G +IV+L+ + K +N+ D+ TPLH AA
Sbjct: 62 DVNAKDSDGRTPLHYAAKEGHKEIVKLLIS-----KGADVNAKDSDGRTPLHYAAKEGHK 116
Query: 238 DVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
++V+ LI +GAD+N D + R+PL LA G
Sbjct: 117 EIVKLLISKGADVNTSDSDGRTPLDLAREHG 147
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 83/161 (51%), Gaps = 13/161 (8%)
Query: 359 DAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGA 418
+AA+N + ++ ++ G + S ++G PLH A G + V+L + GA
Sbjct: 10 EAAENGNKDRVKDLIENGADVNASD--------SDGRTPLHYAAKEGHKEIVKLLISKGA 61
Query: 419 KISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRC 478
++ + D TP+H A +G +IV+L+ + K +N+ D+ TPLH AA
Sbjct: 62 DVNAKDSDGRTPLHYAAKEGHKEIVKLLIS-----KGADVNAKDSDGRTPLHYAAKEGHK 116
Query: 479 DVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVR 519
++V+ LI +GAD+N D + R+PL LA G + V L +
Sbjct: 117 EIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEK 157
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 81/166 (48%), Gaps = 15/166 (9%)
Query: 472 AAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINR 531
AA D V+ LI+ GAD+N D + R+PL AA G + V L+ A++ KD +
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDG 70
Query: 532 RNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNT 591
R LH KE +E+ + LI+ GA +N K++ +PLH AA+ G
Sbjct: 71 RTPLHYAA-------KEGHKEIVKL-----LISKGADVNAKDSDGRTPLHYAAKEGHKEI 118
Query: 592 VKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQVTYVW 637
VK L+S +N SD +G TPL +A + G V + + W
Sbjct: 119 VKLLISK---GADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQGGW 161
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 78/152 (51%), Gaps = 5/152 (3%)
Query: 401 AVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNS 460
A G+ V+ +++GA ++ D TP+H A +G +IV+L+ + K +N+
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLIS-----KGADVNA 65
Query: 461 TDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRN 520
D+ TPLH AA ++V+ LI +GAD+N D + R+PL AA G + V L+
Sbjct: 66 KDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISK 125
Query: 521 KANILLKDINRRNILHLLVLNGGGHIKEFAEE 552
A++ D + R L L +G I + E+
Sbjct: 126 GADVNTSDSDGRTPLDLAREHGNEEIVKLLEK 157
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 81/168 (48%), Gaps = 18/168 (10%)
Query: 434 ACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNV 493
A G D V+ + E +N++D+ TPLH AA ++V+ LI +GAD+N
Sbjct: 11 AAENGNKDRVKDLI-----ENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNA 65
Query: 494 LDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEV 553
D + R+PL AA G + V L+ A++ KD + R LH KE +E+
Sbjct: 66 KDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAA-------KEGHKEI 118
Query: 554 AAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERG 601
+ LI+ GA +N ++ +PL LA +G V KLL + G
Sbjct: 119 VKL-----LISKGADVNTSDSDGRTPLDLAREHGNEEIV-KLLEKQGG 160
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 72/157 (45%), Gaps = 24/157 (15%)
Query: 53 QYKDMI----DILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRA 108
+ KD+I D+ GRT LH AA E ++L+S+ GA +
Sbjct: 19 RVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISK------------GADVNAK 66
Query: 109 CSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKA 168
S+G P+H AAK + +++ + G + D++G PLH A G +
Sbjct: 67 DSDGRTPLHYAAKEGHKEIVKLLISKGADVNAK--------DSDGRTPLHYAAKEGHKEI 118
Query: 169 VELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLM 205
V+L + GA ++T D TP+ LA G +IV+L+
Sbjct: 119 VKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 62/130 (47%), Gaps = 15/130 (11%)
Query: 502 LLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEN 561
L+ AA G V L+ N A++ D + R LH KE +E+ +
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAA-------KEGHKEIVKL----- 55
Query: 562 LINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASK 621
LI+ GA +N K++ +PLH AA+ G VK L+S +N D +G TPLH A+K
Sbjct: 56 LISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISK---GADVNAKDSDGRTPLHYAAK 112
Query: 622 EGFHYSVSIF 631
EG V +
Sbjct: 113 EGHKEIVKLL 122
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 72/157 (45%), Gaps = 13/157 (8%)
Query: 193 ACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNV 252
A G D V+ + E +N++D+ TPLH AA ++V+ LI +GAD+N
Sbjct: 11 AAENGNKDRVKDLI-----ENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNA 65
Query: 253 LDKEKRSPLLLAASRGGWK------TNGVNTRILNNKKQAVLHLATELNKVPILLILLQY 306
D + R+PL AA G + + G + ++ + LH A + I+ +L+
Sbjct: 66 KDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISK 125
Query: 307 KDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFG 343
D+ GRT L +A + +E ++L K G
Sbjct: 126 --GADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 77/188 (40%), Gaps = 38/188 (20%)
Query: 231 AAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHL 290
AA D V+ LI+ GAD+N D + R+PL AA G
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEG---------------------- 48
Query: 291 ATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRAC 350
+K + L++ + D+ GRT LH AA E ++L+ GA +
Sbjct: 49 ----HKEIVKLLISK---GADVNAKDSDGRTPLHYAAKEGHKEIVKLLIS-KGADVNAKD 100
Query: 351 SNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAV 410
S+G P+H AAK + +++ + G + S ++G PL A G+ + V
Sbjct: 101 SDGRTPLHYAAKEGHKEIVKLLISKGADVNTSD--------SDGRTPLDLAREHGNEEIV 152
Query: 411 ELCLKSGA 418
+L K G
Sbjct: 153 KLLEKQGG 160
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 77/151 (50%), Gaps = 13/151 (8%)
Query: 118 DAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGA 177
+AA+N + ++ L+ G + S D++G PLH A G + V+L L GA
Sbjct: 10 EAAENGNKDRVKDLLENGADVNAS--------DSDGKTPLHLAAENGHKEVVKLLLSQGA 61
Query: 178 KISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRC 237
+ + D TP+HLA G ++V+L+ + + N+ D+ TPLH AA
Sbjct: 62 DPNAKDSDGKTPLHLAAENGHKEVVKLLLS-----QGADPNAKDSDGKTPLHLAAENGHK 116
Query: 238 DVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
+VV+ L+ +GAD N D + R+PL LA G
Sbjct: 117 EVVKLLLSQGADPNTSDSDGRTPLDLAREHG 147
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 80/161 (49%), Gaps = 13/161 (8%)
Query: 359 DAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGA 418
+AA+N + ++ L+ G + S ++G PLH A G + V+L L GA
Sbjct: 10 EAAENGNKDRVKDLLENGADVNASD--------SDGKTPLHLAAENGHKEVVKLLLSQGA 61
Query: 419 KISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRC 478
+ + D TP+HLA G ++V+L+ + + N+ D+ TPLH AA
Sbjct: 62 DPNAKDSDGKTPLHLAAENGHKEVVKLLLS-----QGADPNAKDSDGKTPLHLAAENGHK 116
Query: 479 DVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVR 519
+VV+ L+ +GAD N D + R+PL LA G + V L +
Sbjct: 117 EVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEK 157
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 80/166 (48%), Gaps = 15/166 (9%)
Query: 472 AAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINR 531
AA D V+ L++ GAD+N D + ++PL LAA G + V L+ A+ KD +
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG 70
Query: 532 RNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNT 591
+ LHL NG +EV + L + GA N K++ ++PLHLAA G
Sbjct: 71 KTPLHLAAENG-------HKEVVKLLLSQ-----GADPNAKDSDGKTPLHLAAENGHKEV 118
Query: 592 VKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQVTYVW 637
VK LLS N SD +G TPL +A + G V + + W
Sbjct: 119 VKLLLSQ---GADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGW 161
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 70/137 (51%), Gaps = 5/137 (3%)
Query: 401 AVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNS 460
A G+ V+ L++GA ++ D TP+HLA G ++V+L+ + + N+
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLS-----QGADPNA 65
Query: 461 TDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRN 520
D+ TPLH AA +VV+ L+ +GAD N D + ++PL LAA G + V L+
Sbjct: 66 KDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQ 125
Query: 521 KANILLKDINRRNILHL 537
A+ D + R L L
Sbjct: 126 GADPNTSDSDGRTPLDL 142
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 78/171 (45%), Gaps = 16/171 (9%)
Query: 81 ECARILVSEQPECDWIMVKDF---GASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGES 137
E + L+ + VKD GA + + S+G P+H AA+N + +++ L G
Sbjct: 3 ELGKRLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGAD 62
Query: 138 IGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQG 197
D++G PLH A G + V+L L GA + + D TP+HLA G
Sbjct: 63 PNAK--------DSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENG 114
Query: 198 ALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGA 248
++V+L+ + + N++D+ TPL A +VV+ L +G
Sbjct: 115 HKEVVKLLLS-----QGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 79/168 (47%), Gaps = 18/168 (10%)
Query: 434 ACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNV 493
A G D V+ + E +N++D+ TPLH AA +VV+ L+ +GAD N
Sbjct: 11 AAENGNKDRVKDLL-----ENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNA 65
Query: 494 LDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEV 553
D + ++PL LAA G + V L+ A+ KD + + LHL NG +EV
Sbjct: 66 KDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENG-------HKEV 118
Query: 554 AAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERG 601
+ L + GA N ++ +PL LA +G V KLL + G
Sbjct: 119 VKLLLSQ-----GADPNTSDSDGRTPLDLAREHGNEEVV-KLLEKQGG 160
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 72/154 (46%), Gaps = 16/154 (10%)
Query: 339 VKDF---GASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGN 395
VKD GA + + S+G P+H AA+N + +++ L G ++G
Sbjct: 20 VKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD--------SDGK 71
Query: 396 LPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKL 455
PLH A G + V+L L GA + + D TP+HLA G ++V+L+ + +
Sbjct: 72 TPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLS-----QG 126
Query: 456 VCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGA 489
N++D+ TPL A +VV+ L +G
Sbjct: 127 ADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 64/139 (46%), Gaps = 20/139 (14%)
Query: 67 GRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSK 126
G+T LH+AA E ++L+S+ GA S+G P+H AA+N +
Sbjct: 37 GKTPLHLAAENGHKEVVKLLLSQ------------GADPNAKDSDGKTPLHLAAENGHKE 84
Query: 127 TMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDL 186
+++ L G D++G PLH A G + V+L L GA +T D
Sbjct: 85 VVKLLLSQGADPNAK--------DSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDG 136
Query: 187 STPVHLACSQGALDIVRLM 205
TP+ LA G ++V+L+
Sbjct: 137 RTPLDLAREHGNEEVVKLL 155
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 9/128 (7%)
Query: 319 GRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGES 378
G+T LH+AA E ++L+ GA S+G P+H AA+N + +++ L G
Sbjct: 37 GKTPLHLAAENGHKEVVKLLLS-QGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGAD 95
Query: 379 IGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQG 438
++G PLH A G + V+L L GA +T D TP+ LA G
Sbjct: 96 PNAKD--------SDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHG 147
Query: 439 ALDIVRLM 446
++V+L+
Sbjct: 148 NEEVVKLL 155
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 61/130 (46%), Gaps = 15/130 (11%)
Query: 502 LLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEN 561
L+ AA G V L+ N A++ D + + LHL NG +EV + L +
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENG-------HKEVVKLLLSQ- 59
Query: 562 LINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASK 621
GA N K++ ++PLHLAA G VK LLS N D +G TPLH+A++
Sbjct: 60 ----GADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQ---GADPNAKDSDGKTPLHLAAE 112
Query: 622 EGFHYSVSIF 631
G V +
Sbjct: 113 NGHKEVVKLL 122
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 80.1 bits (196), Expect = 3e-15, Method: Composition-based stats.
Identities = 48/129 (37%), Positives = 71/129 (55%), Gaps = 5/129 (3%)
Query: 394 GNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSE 453
G PLH A G + V+L L++GA ++ + + TP+HLA G L++V+L+ E
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL-----E 56
Query: 454 KLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKT 513
+N+ D TPLH AA +VV+ L++ GAD+N DK R+PL LAA G +
Sbjct: 57 AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEV 116
Query: 514 VLTLVRNKA 522
V L+ A
Sbjct: 117 VKLLLEAGA 125
Score = 78.6 bits (192), Expect = 1e-14, Method: Composition-based stats.
Identities = 54/132 (40%), Positives = 72/132 (54%), Gaps = 12/132 (9%)
Query: 467 TPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILL 526
TPLH AA +VV+ L++ GAD+N DK R+PL LAA G + V L+ A++
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 527 KDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARY 586
KD N R LHL NG H+ EV + L+ GA +N K+ + +PLHLAAR
Sbjct: 64 KDKNGRTPLHLAARNG--HL-----EVVKL-----LLEAGADVNAKDKNGRTPLHLAARN 111
Query: 587 GRYNTVKKLLSS 598
G VK LL +
Sbjct: 112 GHLEVVKLLLEA 123
Score = 75.1 bits (183), Expect = 1e-13, Method: Composition-based stats.
Identities = 48/127 (37%), Positives = 67/127 (52%), Gaps = 5/127 (3%)
Query: 429 TPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEG 488
TP+HLA G L++V+L+ E +N+ D TPLH AA +VV+ L++ G
Sbjct: 4 TPLHLAARNGHLEVVKLLL-----EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 489 ADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKE 548
AD+N DK R+PL LAA G + V L+ A++ KD N R LHL NG + +
Sbjct: 59 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK 118
Query: 549 FAEEVAA 555
E A
Sbjct: 119 LLLEAGA 125
Score = 72.4 bits (176), Expect = 7e-13, Method: Composition-based stats.
Identities = 44/138 (31%), Positives = 71/138 (51%), Gaps = 13/138 (9%)
Query: 111 NGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVE 170
NG P+H AA+N + +++ L+ G + D G PLH A G + V+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAK--------DKNGRTPLHLAARNGHLEVVK 52
Query: 171 LCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHC 230
L L++GA ++ + + TP+HLA G L++V+L+ E +N+ D TPLH
Sbjct: 53 LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL-----EAGADVNAKDKNGRTPLHL 107
Query: 231 AAMFDRCDVVQYLIDEGA 248
AA +VV+ L++ GA
Sbjct: 108 AARNGHLEVVKLLLEAGA 125
Score = 66.6 bits (161), Expect = 4e-11, Method: Composition-based stats.
Identities = 40/130 (30%), Positives = 69/130 (53%), Gaps = 9/130 (6%)
Query: 318 HGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGE 377
+GRT LH+AA E ++L+ + GA + NG P+H AA+N + +++ L+ G
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLL-EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 378 SIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQ 437
+ + G PLH A G + V+L L++GA ++ + + TP+HLA
Sbjct: 60 DVNAKDK--------NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN 111
Query: 438 GALDIVRLMF 447
G L++V+L+
Sbjct: 112 GHLEVVKLLL 121
Score = 65.9 bits (159), Expect = 7e-11, Method: Composition-based stats.
Identities = 50/125 (40%), Positives = 67/125 (53%), Gaps = 15/125 (12%)
Query: 499 RSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFL 558
R+PL LAA G + V L+ A++ KD N R LHL NG H+ EV +
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG--HL-----EVVKL-- 53
Query: 559 GENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHI 618
L+ GA +N K+ + +PLHLAAR G VK LL E G+ +N D G TPLH+
Sbjct: 54 ---LLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL--EAGA-DVNAKDKNGRTPLHL 107
Query: 619 ASKEG 623
A++ G
Sbjct: 108 AARNG 112
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 20/141 (14%)
Query: 66 HGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASS 125
+GRT LH+AA E ++L+ + GA + NG P+H AA+N
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLL------------EAGADVNAKDKNGRTPLHLAARNGHL 48
Query: 126 KTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFD 185
+ +++ L+ G + D G PLH A G + V+L L++GA ++ + +
Sbjct: 49 EVVKLLLEAGADVNAK--------DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN 100
Query: 186 LSTPVHLACSQGALDIVRLMF 206
TP+HLA G L++V+L+
Sbjct: 101 GRTPLHLAARNGHLEVVKLLL 121
Score = 62.0 bits (149), Expect = 9e-10, Method: Composition-based stats.
Identities = 41/124 (33%), Positives = 63/124 (50%), Gaps = 11/124 (8%)
Query: 188 TPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEG 247
TP+HLA G L++V+L+ E +N+ D TPLH AA +VV+ L++ G
Sbjct: 4 TPLHLAARNGHLEVVKLLL-----EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 248 ADLNVLDKEKRSPLLLAASRGGWKT------NGVNTRILNNKKQAVLHLATELNKVPILL 301
AD+N DK R+PL LAA G + G + + + LHLA + ++
Sbjct: 59 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK 118
Query: 302 ILLQ 305
+LL+
Sbjct: 119 LLLE 122
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/151 (31%), Positives = 71/151 (47%), Gaps = 30/151 (19%)
Query: 226 TPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQ 285
TPLH AA +VV+ L++ GAD+N DK R+PL LAA G
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG----------------- 46
Query: 286 AVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGAS 345
L V +LL + D+ ++GRT LH+AA E ++L+ + GA
Sbjct: 47 -------HLEVVKLLL-----EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL-EAGAD 93
Query: 346 LKRACSNGYYPIHDAAKNASSKTMEVFLQFG 376
+ NG P+H AA+N + +++ L+ G
Sbjct: 94 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 124
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 38/131 (29%), Positives = 65/131 (49%), Gaps = 11/131 (8%)
Query: 288 LHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLK 347
LHLA + ++ +LL+ D+ ++GRT LH+AA E ++L+ + GA +
Sbjct: 6 LHLAARNGHLEVVKLLLEAG--ADVNAKDKNGRTPLHLAARNGHLEVVKLLL-EAGADVN 62
Query: 348 RACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDF 407
NG P+H AA+N + +++ L+ G + + G PLH A G
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN--------GRTPLHLAARNGHL 114
Query: 408 KAVELCLKSGA 418
+ V+L L++GA
Sbjct: 115 EVVKLLLEAGA 125
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 38/94 (40%), Positives = 50/94 (53%), Gaps = 15/94 (15%)
Query: 530 NRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRY 589
N R LHL NG H+ EV + L+ GA +N K+ + +PLHLAAR G
Sbjct: 1 NGRTPLHLAARNG--HL-----EVVKL-----LLEAGADVNAKDKNGRTPLHLAARNGHL 48
Query: 590 NTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
VK LL E G+ +N D G TPLH+A++ G
Sbjct: 49 EVVKLLL--EAGA-DVNAKDKNGRTPLHLAARNG 79
Score = 36.2 bits (82), Expect = 0.062, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 16/120 (13%)
Query: 16 LIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAA 75
L+ + + VN + N + LHLA + ++ +LL+ D+ ++GRT LH+AA
Sbjct: 21 LLEAGADVNAKDKNGRTP--LHLAARNGHLEVVKLLLEAG--ADVNAKDKNGRTPLHLAA 76
Query: 76 IYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFG 135
E ++L+ + GA + NG P+H AA+N + +++ L+ G
Sbjct: 77 RNGHLEVVKLLL------------EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 124
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 75/151 (49%), Gaps = 13/151 (8%)
Query: 118 DAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGA 177
+AA+N + ++ L+ G S D++G PLH A G + V+L L GA
Sbjct: 10 EAAENGNKDRVKDLLENGADPNAS--------DSDGRTPLHYAAENGHKEIVKLLLSKGA 61
Query: 178 KISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRC 237
+ + D TP+H A G +IV+L+ + K N+ D+ TPLH AA
Sbjct: 62 DPNAKDSDGRTPLHYAAENGHKEIVKLLLS-----KGADPNAKDSDGRTPLHYAAENGHK 116
Query: 238 DVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
++V+ L+ +GAD N D + R+PL LA G
Sbjct: 117 EIVKLLLSKGADPNTSDSDGRTPLDLAREHG 147
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 78/161 (48%), Gaps = 13/161 (8%)
Query: 359 DAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGA 418
+AA+N + ++ L+ G S ++G PLH A G + V+L L GA
Sbjct: 10 EAAENGNKDRVKDLLENGADPNASD--------SDGRTPLHYAAENGHKEIVKLLLSKGA 61
Query: 419 KISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRC 478
+ + D TP+H A G +IV+L+ + K N+ D+ TPLH AA
Sbjct: 62 DPNAKDSDGRTPLHYAAENGHKEIVKLLLS-----KGADPNAKDSDGRTPLHYAAENGHK 116
Query: 479 DVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVR 519
++V+ L+ +GAD N D + R+PL LA G + V L +
Sbjct: 117 EIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEK 157
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 74/166 (44%), Gaps = 15/166 (9%)
Query: 472 AAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINR 531
AA D V+ L++ GAD N D + R+PL AA G + V L+ A+ KD +
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG 70
Query: 532 RNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNT 591
R LH NG I + L++ GA N K++ +PLH AA G
Sbjct: 71 RTPLHYAAENGHKEIVKL------------LLSKGADPNAKDSDGRTPLHYAAENGHKEI 118
Query: 592 VKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQVTYVW 637
VK LLS N SD +G TPL +A + G V + + W
Sbjct: 119 VKLLLSK---GADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQGGW 161
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 73/152 (48%), Gaps = 5/152 (3%)
Query: 401 AVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNS 460
A G+ V+ L++GA + D TP+H A G +IV+L+ + K N+
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLS-----KGADPNA 65
Query: 461 TDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRN 520
D+ TPLH AA ++V+ L+ +GAD N D + R+PL AA G + V L+
Sbjct: 66 KDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSK 125
Query: 521 KANILLKDINRRNILHLLVLNGGGHIKEFAEE 552
A+ D + R L L +G I + E+
Sbjct: 126 GADPNTSDSDGRTPLDLAREHGNEEIVKLLEK 157
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 70/154 (45%), Gaps = 16/154 (10%)
Query: 339 VKDF---GASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGN 395
VKD GA + S+G P+H AA+N + +++ L G ++G
Sbjct: 20 VKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD--------SDGR 71
Query: 396 LPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKL 455
PLH A G + V+L L GA + + D TP+H A G +IV+L+ + K
Sbjct: 72 TPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLS-----KG 126
Query: 456 VCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGA 489
N++D+ TPL A ++V+ L +G
Sbjct: 127 ADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 75/168 (44%), Gaps = 18/168 (10%)
Query: 434 ACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNV 493
A G D V+ + E N++D+ TPLH AA ++V+ L+ +GAD N
Sbjct: 11 AAENGNKDRVKDLL-----ENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNA 65
Query: 494 LDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEV 553
D + R+PL AA G + V L+ A+ KD + R LH NG I +
Sbjct: 66 KDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKL---- 121
Query: 554 AAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERG 601
L++ GA N ++ +PL LA +G V KLL + G
Sbjct: 122 --------LLSKGADPNTSDSDGRTPLDLAREHGNEEIV-KLLEKQGG 160
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 63/139 (45%), Gaps = 20/139 (14%)
Query: 67 GRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSK 126
GRT LH AA E ++L+S+ GA S+G P+H AA+N +
Sbjct: 37 GRTPLHYAAENGHKEIVKLLLSK------------GADPNAKDSDGRTPLHYAAENGHKE 84
Query: 127 TMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDL 186
+++ L G D++G PLH A G + V+L L GA +T D
Sbjct: 85 IVKLLLSKGADPNAK--------DSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDG 136
Query: 187 STPVHLACSQGALDIVRLM 205
TP+ LA G +IV+L+
Sbjct: 137 RTPLDLAREHGNEEIVKLL 155
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 55/130 (42%), Gaps = 15/130 (11%)
Query: 502 LLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEN 561
L+ AA G V L+ N A+ D + R LH NG I +
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKL------------ 55
Query: 562 LINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASK 621
L++ GA N K++ +PLH AA G VK LLS N D +G TPLH A++
Sbjct: 56 LLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSK---GADPNAKDSDGRTPLHYAAE 112
Query: 622 EGFHYSVSIF 631
G V +
Sbjct: 113 NGHKEIVKLL 122
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 75.9 bits (185), Expect = 6e-14, Method: Composition-based stats.
Identities = 43/119 (36%), Positives = 64/119 (53%), Gaps = 5/119 (4%)
Query: 150 DAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQ 209
D +G PLH A G + VE+ LK+GA ++ + D TP+HLA +G L+IV ++
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 91
Query: 210 PSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
+N+ D TPLH AA ++V+ L+ GAD+N DK ++P LA G
Sbjct: 92 AD-----VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNG 145
Score = 73.9 bits (180), Expect = 2e-13, Method: Composition-based stats.
Identities = 42/117 (35%), Positives = 63/117 (53%), Gaps = 5/117 (4%)
Query: 393 EGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPS 452
+G PLH A G + VE+ LK+GA ++ + D TP+HLA +G L+IV ++
Sbjct: 34 DGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 93
Query: 453 EKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 509
+N+ D TPLH AA ++V+ L+ GAD+N DK ++P LA G
Sbjct: 94 -----VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNG 145
Score = 73.9 bits (180), Expect = 3e-13, Method: Composition-based stats.
Identities = 48/157 (30%), Positives = 78/157 (49%), Gaps = 5/157 (3%)
Query: 398 LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC 457
L A G V + + +GA ++ + D TP+HLA +G L+IV ++
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD----- 60
Query: 458 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTL 517
+N+ D TPLH AA ++V+ L+ GAD+N DK+ +PL LAA G + V L
Sbjct: 61 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 120
Query: 518 VRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVA 554
++ A++ +D + L + NG I E ++ A
Sbjct: 121 LKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVLQKAA 157
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/112 (33%), Positives = 58/112 (51%), Gaps = 5/112 (4%)
Query: 157 LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC 216
L A G V + + +GA ++ + D TP+HLA +G L+IV ++
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD----- 60
Query: 217 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
+N+ D TPLH AA ++V+ L+ GAD+N DK+ +PL LAA G
Sbjct: 61 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREG 112
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 51/152 (33%), Positives = 71/152 (46%), Gaps = 15/152 (9%)
Query: 472 AAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINR 531
AA + D V+ L+ GAD+N DK+ +PL LAA G + V L++ A++ KD +
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 532 RNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNT 591
LHL G I E L+ GA +N K+ +PLHLAAR G
Sbjct: 69 YTPLHLAAREGHLEIVEV------------LLKAGADVNAKDKDGYTPLHLAAREGHLEI 116
Query: 592 VKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
V+ LL + +N D G TP +A G
Sbjct: 117 VEVLL---KAGADVNAQDKFGKTPFDLAIDNG 145
Score = 63.2 bits (152), Expect = 4e-10, Method: Composition-based stats.
Identities = 43/141 (30%), Positives = 69/141 (48%), Gaps = 14/141 (9%)
Query: 332 DECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFA 391
D+ RIL+ + GA + +GY P+H AA+ + +EV L+ G + +
Sbjct: 15 DDEVRILMAN-GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDK------- 66
Query: 392 AEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQP 451
+G PLH A G + VE+ LK+GA ++ + D TP+HLA +G L+IV ++
Sbjct: 67 -DGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125
Query: 452 SEKLVCLNSTDAQKMTPLHCA 472
+N+ D TP A
Sbjct: 126 D-----VNAQDKFGKTPFDLA 141
Score = 62.8 bits (151), Expect = 5e-10, Method: Composition-based stats.
Identities = 40/130 (30%), Positives = 62/130 (47%), Gaps = 13/130 (10%)
Query: 102 GASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAV 161
GA + +GY P+H AA+ + +EV L+ G + D +G PLH A
Sbjct: 25 GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK--------DKDGYTPLHLAA 76
Query: 162 HGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTD 221
G + VE+ LK+GA ++ + D TP+HLA +G L+IV ++ +N+ D
Sbjct: 77 REGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-----VNAQD 131
Query: 222 AQKMTPLHCA 231
TP A
Sbjct: 132 KFGKTPFDLA 141
Score = 59.3 bits (142), Expect = 6e-09, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 64/136 (47%), Gaps = 9/136 (6%)
Query: 311 DILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTME 370
D+ + G T LH+AA E +L+K GA + +GY P+H AA+ + +E
Sbjct: 27 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKA-GADVNAKDKDGYTPLHLAAREGHLEIVE 85
Query: 371 VFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTP 430
V L+ G + ++ G PLH A G + VE+ LK+GA ++ Q TP
Sbjct: 86 VLLKAGADVNAKDKD--------GYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTP 137
Query: 431 VHLACSQGALDIVRLM 446
LA G DI ++
Sbjct: 138 FDLAIDNGNEDIAEVL 153
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 42/138 (30%), Positives = 65/138 (47%), Gaps = 12/138 (8%)
Query: 458 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTL 517
+N+ D TPLH AA ++V+ L+ GAD+N DK+ +PL LAA G + V L
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 87
Query: 518 VRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNE 577
++ A++ KD + LHL G I E L+ GA +N ++ +
Sbjct: 88 LKAGADVNAKDKDGYTPLHLAAREGHLEIVEV------------LLKAGADVNAQDKFGK 135
Query: 578 SPLHLAARYGRYNTVKKL 595
+P LA G + + L
Sbjct: 136 TPFDLAIDNGNEDIAEVL 153
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 43/122 (35%), Positives = 58/122 (47%), Gaps = 15/122 (12%)
Query: 502 LLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEN 561
LL AA G V L+ N A++ KD + LHL G I E
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEV------------ 53
Query: 562 LINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASK 621
L+ GA +N K+ +PLHLAAR G V+ LL + +N D +G TPLH+A++
Sbjct: 54 LLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLL---KAGADVNAKDKDGYTPLHLAAR 110
Query: 622 EG 623
EG
Sbjct: 111 EG 112
Score = 55.8 bits (133), Expect = 6e-08, Method: Composition-based stats.
Identities = 42/147 (28%), Positives = 63/147 (42%), Gaps = 20/147 (13%)
Query: 59 DILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHD 118
D+ + G T LH+AA E +L+ GA + +GY P+H
Sbjct: 27 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKA------------GADVNAKDKDGYTPLHL 74
Query: 119 AAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAK 178
AA+ + +EV L+ G + D +G PLH A G + VE+ LK+GA
Sbjct: 75 AAREGHLEIVEVLLKAGADVNAK--------DKDGYTPLHLAAREGHLEIVEVLLKAGAD 126
Query: 179 ISTQQFDLSTPVHLACSQGALDIVRLM 205
++ Q TP LA G DI ++
Sbjct: 127 VNAQDKFGKTPFDLAIDNGNEDIAEVL 153
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 8/130 (6%)
Query: 217 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWK----- 271
+N+ D TPLH AA ++V+ L+ GAD+N DK+ +PL LAA G +
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 87
Query: 272 -TNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYD 330
G + + LHLA + I+ +LL K D+ + G+T +A
Sbjct: 88 LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLL--KAGADVNAQDKFGKTPFDLAIDNG 145
Query: 331 FDECARILVK 340
++ A +L K
Sbjct: 146 NEDIAEVLQK 155
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 75.9 bits (185), Expect = 6e-14, Method: Composition-based stats.
Identities = 43/119 (36%), Positives = 64/119 (53%), Gaps = 5/119 (4%)
Query: 150 DAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQ 209
D +G PLH A G + VE+ LK+GA ++ + D TP+HLA +G L+IV ++
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 91
Query: 210 PSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
+N+ D TPLH AA ++V+ L+ GAD+N DK ++P LA G
Sbjct: 92 AD-----VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREG 145
Score = 73.9 bits (180), Expect = 2e-13, Method: Composition-based stats.
Identities = 42/117 (35%), Positives = 63/117 (53%), Gaps = 5/117 (4%)
Query: 393 EGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPS 452
+G PLH A G + VE+ LK+GA ++ + D TP+HLA +G L+IV ++
Sbjct: 34 DGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 93
Query: 453 EKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 509
+N+ D TPLH AA ++V+ L+ GAD+N DK ++P LA G
Sbjct: 94 -----VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREG 145
Score = 71.2 bits (173), Expect = 1e-12, Method: Composition-based stats.
Identities = 47/157 (29%), Positives = 77/157 (49%), Gaps = 5/157 (3%)
Query: 398 LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC 457
L A G V + + +GA ++ + D TP+HLA +G L+IV ++
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD----- 60
Query: 458 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTL 517
+N+ D TPLH AA ++V+ L+ GAD+N DK+ +PL LAA G + V L
Sbjct: 61 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 120
Query: 518 VRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVA 554
++ A++ +D + L + G I E ++ A
Sbjct: 121 LKAGADVNAQDKFGKTPFDLAIREGHEDIAEVLQKAA 157
Score = 67.8 bits (164), Expect = 2e-11, Method: Composition-based stats.
Identities = 53/161 (32%), Positives = 75/161 (46%), Gaps = 15/161 (9%)
Query: 472 AAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINR 531
AA + D V+ L+ GAD+N DK+ +PL LAA G + V L++ A++ KD +
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 532 RNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNT 591
LHL G I E L+ GA +N K+ +PLHLAAR G
Sbjct: 69 YTPLHLAAREGHLEIVEV------------LLKAGADVNAKDKDGYTPLHLAAREGHLEI 116
Query: 592 VKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQ 632
V+ LL + +N D G TP +A +EG + Q
Sbjct: 117 VEVLL---KAGADVNAQDKFGKTPFDLAIREGHEDIAEVLQ 154
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/112 (33%), Positives = 58/112 (51%), Gaps = 5/112 (4%)
Query: 157 LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC 216
L A G V + + +GA ++ + D TP+HLA +G L+IV ++
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD----- 60
Query: 217 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
+N+ D TPLH AA ++V+ L+ GAD+N DK+ +PL LAA G
Sbjct: 61 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREG 112
Score = 63.9 bits (154), Expect = 3e-10, Method: Composition-based stats.
Identities = 45/153 (29%), Positives = 73/153 (47%), Gaps = 14/153 (9%)
Query: 332 DECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFA 391
D+ RIL+ + GA + +GY P+H AA+ + +EV L+ G + +
Sbjct: 15 DDEVRILMAN-GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDK------- 66
Query: 392 AEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQP 451
+G PLH A G + VE+ LK+GA ++ + D TP+HLA +G L+IV ++
Sbjct: 67 -DGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125
Query: 452 SEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYL 484
+N+ D TP A D+ + L
Sbjct: 126 D-----VNAQDKFGKTPFDLAIREGHEDIAEVL 153
Score = 63.5 bits (153), Expect = 3e-10, Method: Composition-based stats.
Identities = 42/142 (29%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 102 GASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAV 161
GA + +GY P+H AA+ + +EV L+ G + D +G PLH A
Sbjct: 25 GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK--------DKDGYTPLHLAA 76
Query: 162 HGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTD 221
G + VE+ LK+GA ++ + D TP+HLA +G L+IV ++ +N+ D
Sbjct: 77 REGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-----VNAQD 131
Query: 222 AQKMTPLHCAAMFDRCDVVQYL 243
TP A D+ + L
Sbjct: 132 KFGKTPFDLAIREGHEDIAEVL 153
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 43/138 (31%), Positives = 66/138 (47%), Gaps = 12/138 (8%)
Query: 458 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTL 517
+N+ D TPLH AA ++V+ L+ GAD+N DK+ +PL LAA G + V L
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 87
Query: 518 VRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNE 577
++ A++ KD + LHL G I E L+ GA +N ++ +
Sbjct: 88 LKAGADVNAKDKDGYTPLHLAAREGHLEIVEV------------LLKAGADVNAQDKFGK 135
Query: 578 SPLHLAARYGRYNTVKKL 595
+P LA R G + + L
Sbjct: 136 TPFDLAIREGHEDIAEVL 153
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 65/136 (47%), Gaps = 9/136 (6%)
Query: 311 DILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTME 370
D+ + G T LH+AA E +L+K GA + +GY P+H AA+ + +E
Sbjct: 27 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKA-GADVNAKDKDGYTPLHLAAREGHLEIVE 85
Query: 371 VFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTP 430
V L+ G + ++ G PLH A G + VE+ LK+GA ++ Q TP
Sbjct: 86 VLLKAGADVNAKDKD--------GYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTP 137
Query: 431 VHLACSQGALDIVRLM 446
LA +G DI ++
Sbjct: 138 FDLAIREGHEDIAEVL 153
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 43/122 (35%), Positives = 58/122 (47%), Gaps = 15/122 (12%)
Query: 502 LLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEN 561
LL AA G V L+ N A++ KD + LHL G I E
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEV------------ 53
Query: 562 LINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASK 621
L+ GA +N K+ +PLHLAAR G V+ LL + +N D +G TPLH+A++
Sbjct: 54 LLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLL---KAGADVNAKDKDGYTPLHLAAR 110
Query: 622 EG 623
EG
Sbjct: 111 EG 112
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 20/147 (13%)
Query: 59 DILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHD 118
D+ + G T LH+AA E +L+ GA + +GY P+H
Sbjct: 27 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKA------------GADVNAKDKDGYTPLHL 74
Query: 119 AAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAK 178
AA+ + +EV L+ G + D +G PLH A G + VE+ LK+GA
Sbjct: 75 AAREGHLEIVEVLLKAGADVNAK--------DKDGYTPLHLAAREGHLEIVEVLLKAGAD 126
Query: 179 ISTQQFDLSTPVHLACSQGALDIVRLM 205
++ Q TP LA +G DI ++
Sbjct: 127 VNAQDKFGKTPFDLAIREGHEDIAEVL 153
Score = 48.9 bits (115), Expect = 8e-06, Method: Composition-based stats.
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 8/130 (6%)
Query: 217 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWK----- 271
+N+ D TPLH AA ++V+ L+ GAD+N DK+ +PL LAA G +
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 87
Query: 272 -TNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYD 330
G + + LHLA + I+ +LL K D+ + G+T +A
Sbjct: 88 LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLL--KAGADVNAQDKFGKTPFDLAIREG 145
Query: 331 FDECARILVK 340
++ A +L K
Sbjct: 146 HEDIAEVLQK 155
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 102/226 (45%), Gaps = 23/226 (10%)
Query: 397 PLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLV 456
PLH+A G + +++GA I T D TP+ A L+ V+ + +
Sbjct: 14 PLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLI-----KAGA 68
Query: 457 CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGA-DLNVLDKEKRSPLLLAASRGGWKTVL 515
++ DA+ T LH AA +VVQYL+ G D+N D +P++ A V
Sbjct: 69 LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVK 128
Query: 516 TLVRNKANILLKDINRRNI-LHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNN 574
L+ ++I ++D N NI LH +G V + E L+ ++ N
Sbjct: 129 LLLSKGSDINIRD-NEENICLHWAAFSG------------CVDIAEILLAAKCDLHAVNI 175
Query: 575 SNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIAS 620
+SPLH+AAR RY+ V LS + + N+ EG TPL AS
Sbjct: 176 HGDSPLHIAARENRYDCVVLFLSRDSDVTLKNK---EGETPLQCAS 218
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 86/189 (45%), Gaps = 25/189 (13%)
Query: 465 KMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANI 524
K +PLH AA D+ L+ GA+++ +++R+PL+ AA + V L++ A +
Sbjct: 11 KRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV 70
Query: 525 LLKDINRRNILHLLVLNGGGHIKEF----------------------AEEVAAVFLGENL 562
KD LHL G + ++ A E V L + L
Sbjct: 71 DPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLL 130
Query: 563 INLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKE 622
++ G+ IN+++N LH AA G + + LL+++ +N G +PLHIA++E
Sbjct: 131 LSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVN---IHGDSPLHIAARE 187
Query: 623 GFHYSVSIF 631
+ V +F
Sbjct: 188 NRYDCVVLF 196
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 98/224 (43%), Gaps = 20/224 (8%)
Query: 111 NGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVE 170
N P+H AA+ + +Q G +I E+ + PL A +AV+
Sbjct: 10 NKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRT--------PLMEAAENNHLEAVK 61
Query: 171 LCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHC 230
+K+GA + + + ST +HLA +G ++V+ + S + +N D TP+
Sbjct: 62 YLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLL----SNGQMDVNCQDDGGWTPMIW 117
Query: 231 AAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGV------NTRILNNKK 284
A + D+V+ L+ +G+D+N+ D E+ L AA G + + +N
Sbjct: 118 ATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHG 177
Query: 285 QAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAI 328
+ LH+A N+ +++ L D+ + G T L A++
Sbjct: 178 DSPLHIAARENRYDCVVLFLSRDS--DVTLKNKEGETPLQCASL 219
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/223 (21%), Positives = 89/223 (39%), Gaps = 45/223 (20%)
Query: 352 NGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVE 411
N P+H AA+ + +Q G +I E+ + PL A +AV+
Sbjct: 10 NKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRT--------PLMEAAENNHLEAVK 61
Query: 412 LCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHC 471
+K+GA + + + ST +HLA +G ++V+ + S + +N D TP+
Sbjct: 62 YLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLL----SNGQMDVNCQDDGGWTPMIW 117
Query: 472 AAMFDRCDVVQYLIDEGADLNVLDKEKR-------------------------------- 499
A + D+V+ L+ +G+D+N+ D E+
Sbjct: 118 ATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHG 177
Query: 500 -SPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLN 541
SPL +AA + V+ + +++ LK+ L LN
Sbjct: 178 DSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLN 220
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 100/251 (39%), Gaps = 42/251 (16%)
Query: 224 KMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNK 283
K +PLH AA D+ L+ GA+++ +++R+PL+ AA NN
Sbjct: 11 KRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAE--------------NNH 56
Query: 284 KQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFG 343
+AV +L L+ KD G T LH+AA E + L+ +
Sbjct: 57 LEAVKYLIKA-------GALVDPKDA--------EGSTCLHLAAKKGHYEVVQYLLSNGQ 101
Query: 344 ASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVH 403
+ G+ P+ A + +++ L G I++ E N+ LH A
Sbjct: 102 MDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD--------INIRDNEENICLHWAAF 153
Query: 404 GGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDA 463
G E+ L + + +P+H+A + D V L + + V L + +
Sbjct: 154 SGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLS---RDSDVTLKNKEG 210
Query: 464 QKMTPLHCAAM 474
+ TPL CA++
Sbjct: 211 E--TPLQCASL 219
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 20 SSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDF 79
S G + I +N++ LH A V I ILL K D+ HG + LHIAA +
Sbjct: 132 SKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAK--CDLHAVNIHGDSPLHIAARENR 189
Query: 80 DECARILVSEQPE 92
+C + +S +
Sbjct: 190 YDCVVLFLSRDSD 202
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 76/149 (51%), Gaps = 5/149 (3%)
Query: 401 AVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNS 460
A G V + + +GA ++ D TP+HLA S G L+IV ++ + +N+
Sbjct: 21 AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLL-----KNGADVNA 75
Query: 461 TDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRN 520
+D +TPLH AA ++V+ L+ GAD+N D + +PL LAA G + V L+++
Sbjct: 76 SDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKH 135
Query: 521 KANILLKDINRRNILHLLVLNGGGHIKEF 549
A++ +D + + + NG + E
Sbjct: 136 GADVNAQDKFGKTAFDISIDNGNEDLAEI 164
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 73/151 (48%), Gaps = 13/151 (8%)
Query: 118 DAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGA 177
+AA+ + + + G + + D +G PLH A G + VE+ LK+GA
Sbjct: 20 EAARAGQDDEVRILMANGADVNAT--------DNDGYTPLHLAASNGHLEIVEVLLKNGA 71
Query: 178 KISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRC 237
++ TP+HLA + G L+IV ++ + +N+ D TPLH AA +
Sbjct: 72 DVNASDLTGITPLHLAAATGHLEIVEVLL-----KHGADVNAYDNDGHTPLHLAAKYGHL 126
Query: 238 DVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
++V+ L+ GAD+N DK ++ ++ G
Sbjct: 127 EIVEVLLKHGADVNAQDKFGKTAFDISIDNG 157
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 62/117 (52%), Gaps = 5/117 (4%)
Query: 393 EGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPS 452
+G PLH A G + VE+ LK+GA ++ TP+HLA + G L+IV ++
Sbjct: 46 DGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLL----- 100
Query: 453 EKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 509
+ +N+ D TPLH AA + ++V+ L+ GAD+N DK ++ ++ G
Sbjct: 101 KHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNG 157
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 73/161 (45%), Gaps = 15/161 (9%)
Query: 472 AAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINR 531
AA + D V+ L+ GAD+N D + +PL LAAS G + V L++N A++ D+
Sbjct: 21 AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTG 80
Query: 532 RNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNT 591
LHL G I E L+ GA +N +N +PLHLAA+YG
Sbjct: 81 ITPLHLAAATGHLEIVEV------------LLKHGADVNAYDNDGHTPLHLAAKYGHLEI 128
Query: 592 VKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQ 632
V+ LL + +N D G T I+ G I Q
Sbjct: 129 VEVLL---KHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 60/116 (51%), Gaps = 9/116 (7%)
Query: 332 DECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFA 391
D+ RIL+ + GA + ++GY P+H AA N + +EV L+ G + S I+
Sbjct: 27 DDEVRILMAN-GADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGIT--- 82
Query: 392 AEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMF 447
PLH A G + VE+ LK GA ++ D TP+HLA G L+IV ++
Sbjct: 83 -----PLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLL 133
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 60/126 (47%), Gaps = 12/126 (9%)
Query: 81 ECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGC 140
E AR + E +M GA + ++GY P+H AA N + +EV L+ G +
Sbjct: 20 EAAR--AGQDDEVRILMAN--GADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNA 75
Query: 141 SREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALD 200
S D G PLH A G + VE+ LK GA ++ D TP+HLA G L+
Sbjct: 76 S--------DLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLE 127
Query: 201 IVRLMF 206
IV ++
Sbjct: 128 IVEVLL 133
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 65/149 (43%), Gaps = 30/149 (20%)
Query: 231 AAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHL 290
AA + D V+ L+ GAD+N D + +PL LAAS G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNG---------------------- 58
Query: 291 ATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRAC 350
L V +LL K+ D+ G T LH+AA E +L+K GA +
Sbjct: 59 --HLEIVEVLL-----KNGADVNASDLTGITPLHLAAATGHLEIVEVLLK-HGADVNAYD 110
Query: 351 SNGYYPIHDAAKNASSKTMEVFLQFGESI 379
++G+ P+H AAK + +EV L+ G +
Sbjct: 111 NDGHTPLHLAAKYGHLEIVEVLLKHGADV 139
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 14/131 (10%)
Query: 20 SSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDF 79
++G + +N LHLA + I+ +LL K+ D+ G T LH+AA
Sbjct: 35 ANGADVNATDNDGYTPLHLAASNGHLEIVEVLL--KNGADVNASDLTGITPLHLAAATGH 92
Query: 80 DECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIG 139
E +L+ GA + ++G+ P+H AAK + +EV L+ G +
Sbjct: 93 LEIVEVLLK------------HGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVN 140
Query: 140 CSREEMISLFD 150
+ + FD
Sbjct: 141 AQDKFGKTAFD 151
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 74/150 (49%), Gaps = 5/150 (3%)
Query: 400 SAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLN 459
A G V + + +GA ++ + D TP+HLA +G L+IV ++ +N
Sbjct: 20 EAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-----VN 74
Query: 460 STDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVR 519
+ D TPLH AA ++V+ L+ GAD+N DK+ +PL LAA G + V L++
Sbjct: 75 AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 134
Query: 520 NKANILLKDINRRNILHLLVLNGGGHIKEF 549
A++ +D + + + NG + E
Sbjct: 135 AGADVNAQDKFGKTAFDISIDNGNEDLAEI 164
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 60/110 (54%), Gaps = 5/110 (4%)
Query: 146 ISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLM 205
++ D +G PLH A G + VE+ LK+GA ++ + D TP+HLA +G L+IV ++
Sbjct: 40 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 99
Query: 206 FNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDK 255
+N+ D TPLH AA ++V+ L+ GAD+N DK
Sbjct: 100 LKAGAD-----VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDK 144
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 57/104 (54%), Gaps = 5/104 (4%)
Query: 393 EGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPS 452
+G PLH A G + VE+ LK+GA ++ + D TP+HLA +G L+IV ++
Sbjct: 46 DGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 105
Query: 453 EKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDK 496
+N+ D TPLH AA ++V+ L+ GAD+N DK
Sbjct: 106 -----VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDK 144
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 57/110 (51%), Gaps = 5/110 (4%)
Query: 159 SAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLN 218
A G V + + +GA ++ + D TP+HLA +G L+IV ++ +N
Sbjct: 20 EAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-----VN 74
Query: 219 STDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
+ D TPLH AA ++V+ L+ GAD+N DK+ +PL LAA G
Sbjct: 75 AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREG 124
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 62/116 (53%), Gaps = 9/116 (7%)
Query: 332 DECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFA 391
D+ RIL+ + GA + +GY P+H AA+ + +EV L+ G + +
Sbjct: 27 DDEVRILMAN-GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDK------- 78
Query: 392 AEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMF 447
+G PLH A G + VE+ LK+GA ++ + D TP+HLA +G L+IV ++
Sbjct: 79 -DGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLL 133
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 62/126 (49%), Gaps = 12/126 (9%)
Query: 81 ECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGC 140
E AR + E +M GA + +GY P+H AA+ + +EV L+ G +
Sbjct: 20 EAAR--AGQDDEVRILMAN--GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA 75
Query: 141 SREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALD 200
D +G PLH A G + VE+ LK+GA ++ + D TP+HLA +G L+
Sbjct: 76 K--------DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLE 127
Query: 201 IVRLMF 206
IV ++
Sbjct: 128 IVEVLL 133
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 75/161 (46%), Gaps = 15/161 (9%)
Query: 472 AAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINR 531
AA + D V+ L+ GAD+N DK+ +PL LAA G + V L++ A++ KD +
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 80
Query: 532 RNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNT 591
LHL G H++ + E L+ GA +N K+ +PLHLAAR G
Sbjct: 81 YTPLHLAAREG--HLE----------IVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEI 128
Query: 592 VKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQ 632
V+ LL + +N D G T I+ G I Q
Sbjct: 129 VEVLL---KAGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 63/130 (48%), Gaps = 15/130 (11%)
Query: 502 LLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEN 561
LL AA G V L+ N A++ KD + LHL G H++ + E
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREG--HLE----------IVEV 65
Query: 562 LINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASK 621
L+ GA +N K+ +PLHLAAR G V+ LL + +N D +G TPLH+A++
Sbjct: 66 LLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLL---KAGADVNAKDKDGYTPLHLAAR 122
Query: 622 EGFHYSVSIF 631
EG V +
Sbjct: 123 EGHLEIVEVL 132
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 56/117 (47%), Gaps = 5/117 (4%)
Query: 426 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 485
DL + A G D VR++ +N+ D TPLH AA ++V+ L+
Sbjct: 13 DLGKKLLEAARAGQDDEVRILM-----ANGADVNAKDKDGYTPLHLAAREGHLEIVEVLL 67
Query: 486 DEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNG 542
GAD+N DK+ +PL LAA G + V L++ A++ KD + LHL G
Sbjct: 68 KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREG 124
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 60/128 (46%), Gaps = 9/128 (7%)
Query: 319 GRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGES 378
G T LH+AA E +L+K GA + +GY P+H AA+ + +EV L+ G
Sbjct: 47 GYTPLHLAAREGHLEIVEVLLK-AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 105
Query: 379 IGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQG 438
+ ++ G PLH A G + VE+ LK+GA ++ Q T ++ G
Sbjct: 106 VNAKDKD--------GYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNG 157
Query: 439 ALDIVRLM 446
D+ ++
Sbjct: 158 NEDLAEIL 165
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 59/139 (42%), Gaps = 20/139 (14%)
Query: 67 GRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSK 126
G T LH+AA E +L+ GA + +GY P+H AA+ +
Sbjct: 47 GYTPLHLAAREGHLEIVEVLLK------------AGADVNAKDKDGYTPLHLAAREGHLE 94
Query: 127 TMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDL 186
+EV L+ G + D +G PLH A G + VE+ LK+GA ++ Q
Sbjct: 95 IVEVLLKAGADVNAK--------DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 146
Query: 187 STPVHLACSQGALDIVRLM 205
T ++ G D+ ++
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 70/160 (43%), Gaps = 13/160 (8%)
Query: 185 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 244
DL + A G D VR++ +N+ D TPLH AA ++V+ L+
Sbjct: 13 DLGKKLLEAARAGQDDEVRILM-----ANGADVNAKDKDGYTPLHLAAREGHLEIVEVLL 67
Query: 245 DEGADLNVLDKEKRSPLLLAASRGGWK------TNGVNTRILNNKKQAVLHLATELNKVP 298
GAD+N DK+ +PL LAA G + G + + LHLA +
Sbjct: 68 KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLE 127
Query: 299 ILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARIL 338
I+ +LL K D+ + G+TA I+ ++ A IL
Sbjct: 128 IVEVLL--KAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 79/153 (51%), Gaps = 5/153 (3%)
Query: 401 AVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNS 460
A G V + + +GA ++ + F TP+HLA G L+IV ++ + +N+
Sbjct: 21 AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLL-----KNGADVNA 75
Query: 461 TDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRN 520
D+ +TPLH AA ++V+ L+ GAD+N D +PL LAA RG + V L++N
Sbjct: 76 KDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKN 135
Query: 521 KANILLKDINRRNILHLLVLNGGGHIKEFAEEV 553
A++ +D + + + NG + E +++
Sbjct: 136 GADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 65/119 (54%), Gaps = 5/119 (4%)
Query: 150 DAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQ 209
D G PLH A H G + VE+ LK+GA ++ + TP+HLA +G L+IV ++
Sbjct: 44 DFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLL--- 100
Query: 210 PSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
+ +N++D+ TPLH AA ++V+ L+ GAD+N DK ++ ++ G
Sbjct: 101 --KNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNG 157
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 64/116 (55%), Gaps = 5/116 (4%)
Query: 394 GNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSE 453
G PLH A H G + VE+ LK+GA ++ + TP+HLA +G L+IV ++ +
Sbjct: 47 GWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLL-----K 101
Query: 454 KLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 509
+N++D+ TPLH AA ++V+ L+ GAD+N DK ++ ++ G
Sbjct: 102 NGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNG 157
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 58/109 (53%), Gaps = 5/109 (4%)
Query: 160 AVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNS 219
A G V + + +GA ++ + F TP+HLA G L+IV ++ + +N+
Sbjct: 21 AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLL-----KNGADVNA 75
Query: 220 TDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
D+ +TPLH AA ++V+ L+ GAD+N D +PL LAA RG
Sbjct: 76 KDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRG 124
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 75/162 (46%), Gaps = 13/162 (8%)
Query: 185 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 244
DL + A G D VR++ +N+ D TPLH AA F ++V+ L+
Sbjct: 13 DLGKKLLEAARAGQDDEVRILM-----ANGADVNARDFTGWTPLHLAAHFGHLEIVEVLL 67
Query: 245 DEGADLNVLDKEKRSPLLLAASRGGWK------TNGVNTRILNNKKQAVLHLATELNKVP 298
GAD+N D +PL LAA RG + NG + ++ LHLA + +
Sbjct: 68 KNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLE 127
Query: 299 ILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVK 340
I+ +LL K+ D+ + G+TA I+ ++ A IL K
Sbjct: 128 IVEVLL--KNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 77/207 (37%), Gaps = 53/207 (25%)
Query: 426 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 485
DL + A G D VR++ +N+ D TPLH AA F ++V+ L+
Sbjct: 13 DLGKKLLEAARAGQDDEVRILM-----ANGADVNARDFTGWTPLHLAAHFGHLEIVEVLL 67
Query: 486 DEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGH 545
GAD+N D +PL LAA RG + V L++N
Sbjct: 68 KNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKN------------------------- 102
Query: 546 IKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFII 605
GA +N ++ +PLHLAA+ G V+ LL + +
Sbjct: 103 --------------------GADVNASDSHGFTPLHLAAKRGHLEIVEVLL---KNGADV 139
Query: 606 NESDGEGLTPLHIASKEGFHYSVSIFQ 632
N D G T I+ G I Q
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 9/132 (6%)
Query: 319 GRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGES 378
G T LH+AA + E +L+K+ GA + S G P+H AA+ + +EV L+ G
Sbjct: 47 GWTPLHLAAHFGHLEIVEVLLKN-GADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGAD 105
Query: 379 IGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQG 438
+ S + G PLH A G + VE+ LK+GA ++ Q T ++ G
Sbjct: 106 VNASD--------SHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNG 157
Query: 439 ALDIVRLMFNLQ 450
D+ ++ L
Sbjct: 158 NEDLAEILQKLN 169
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 61/143 (42%), Gaps = 20/143 (13%)
Query: 67 GRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSK 126
G T LH+AA + E +L+ GA + S G P+H AA+ +
Sbjct: 47 GWTPLHLAAHFGHLEIVEVLLKN------------GADVNAKDSLGVTPLHLAARRGHLE 94
Query: 127 TMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDL 186
+EV L+ G + S D+ G PLH A G + VE+ LK+GA ++ Q
Sbjct: 95 IVEVLLKNGADVNAS--------DSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFG 146
Query: 187 STPVHLACSQGALDIVRLMFNLQ 209
T ++ G D+ ++ L
Sbjct: 147 KTAFDISIDNGNEDLAEILQKLN 169
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 13/151 (8%)
Query: 118 DAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGA 177
+AA+ + + + G + + D G PLH A + G + VE+ LK GA
Sbjct: 20 EAARAGQDDEVRILMANGADVNAA--------DNTGTTPLHLAAYSGHLEIVEVLLKHGA 71
Query: 178 KISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRC 237
+ TP+HLA G L+IV ++ + +N+ D+ MTPLH AA +
Sbjct: 72 DVDASDVFGYTPLHLAAYWGHLEIVEVLL-----KNGADVNAMDSDGMTPLHLAAKWGYL 126
Query: 238 DVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
++V+ L+ GAD+N DK ++ ++ G
Sbjct: 127 EIVEVLLKHGADVNAQDKFGKTAFDISIDNG 157
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 78/153 (50%), Gaps = 5/153 (3%)
Query: 401 AVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNS 460
A G V + + +GA ++ +TP+HLA G L+IV ++ +++
Sbjct: 21 AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGAD-----VDA 75
Query: 461 TDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRN 520
+D TPLH AA + ++V+ L+ GAD+N +D + +PL LAA G + V L+++
Sbjct: 76 SDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKH 135
Query: 521 KANILLKDINRRNILHLLVLNGGGHIKEFAEEV 553
A++ +D + + + NG + E +++
Sbjct: 136 GADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 68/133 (51%), Gaps = 10/133 (7%)
Query: 315 GGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQ 374
G + GR L A DE RIL+ + GA + A + G P+H AA + + +EV L+
Sbjct: 11 GSDLGRKLLEAARAGQDDEV-RILMAN-GADVNAADNTGTTPLHLAAYSGHLEIVEVLLK 68
Query: 375 FGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLA 434
G + S +F G PLH A + G + VE+ LK+GA ++ D TP+HLA
Sbjct: 69 HGADVDAS-----DVF---GYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLA 120
Query: 435 CSQGALDIVRLMF 447
G L+IV ++
Sbjct: 121 AKWGYLEIVEVLL 133
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 67/144 (46%), Gaps = 21/144 (14%)
Query: 63 GGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKN 122
G + GR L A DE RIL++ GA + A + G P+H AA +
Sbjct: 11 GSDLGRKLLEAARAGQDDEV-RILMAN------------GADVNAADNTGTTPLHLAAYS 57
Query: 123 ASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQ 182
+ +EV L+ G + S D G PLH A + G + VE+ LK+GA ++
Sbjct: 58 GHLEIVEVLLKHGADVDAS--------DVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAM 109
Query: 183 QFDLSTPVHLACSQGALDIVRLMF 206
D TP+HLA G L+IV ++
Sbjct: 110 DSDGMTPLHLAAKWGYLEIVEVLL 133
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 74/161 (45%), Gaps = 15/161 (9%)
Query: 472 AAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINR 531
AA + D V+ L+ GAD+N D +PL LAA G + V L+++ A++ D+
Sbjct: 21 AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFG 80
Query: 532 RNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNT 591
LHL GH++ + E L+ GA +N ++ +PLHLAA++G
Sbjct: 81 YTPLHLAAY--WGHLE----------IVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEI 128
Query: 592 VKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQ 632
V+ LL + +N D G T I+ G I Q
Sbjct: 129 VEVLL---KHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 10/125 (8%)
Query: 262 LLAASRGGWK-------TNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQ 314
LL A+R G NG + +N LHLA + I+ +LL++ D+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHG--ADVDA 75
Query: 315 GGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQ 374
G T LH+AA + E +L+K+ GA + S+G P+H AAK + +EV L+
Sbjct: 76 SDVFGYTPLHLAAYWGHLEIVEVLLKN-GADVNAMDSDGMTPLHLAAKWGYLEIVEVLLK 134
Query: 375 FGESI 379
G +
Sbjct: 135 HGADV 139
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 61/148 (41%), Gaps = 14/148 (9%)
Query: 3 LLSVQSDNKNKSRLIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQ 62
LL ++ I ++G + +N LHLA + I+ +LL++ D+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHG--ADVDA 75
Query: 63 GGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKN 122
G T LH+AA + E +L+ GA + S+G P+H AAK
Sbjct: 76 SDVFGYTPLHLAAYWGHLEIVEVLLKN------------GADVNAMDSDGMTPLHLAAKW 123
Query: 123 ASSKTMEVFLQFGESIGCSREEMISLFD 150
+ +EV L+ G + + + FD
Sbjct: 124 GYLEIVEVLLKHGADVNAQDKFGKTAFD 151
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 66/123 (53%), Gaps = 5/123 (4%)
Query: 146 ISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLM 205
++ D +G+ PLH A G + VE+ LK GA ++ + D TP+HLA G L+IV ++
Sbjct: 40 VNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVL 99
Query: 206 FNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAA 265
+N+ DA +TPLH AA ++V+ L+ GAD+N DK ++ ++
Sbjct: 100 LKYGAD-----VNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISI 154
Query: 266 SRG 268
G
Sbjct: 155 DNG 157
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 73/151 (48%), Gaps = 13/151 (8%)
Query: 359 DAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGA 418
+AA+ + + + G + ++ G+ PLH A G + VE+ LK GA
Sbjct: 20 EAARAGQDDEVRILMANGADVNAHDDQ--------GSTPLHLAAWIGHPEIVEVLLKHGA 71
Query: 419 KISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRC 478
++ + D TP+HLA G L+IV ++ +N+ DA +TPLH AA
Sbjct: 72 DVNARDTDGWTPLHLAADNGHLEIVEVLLKYGAD-----VNAQDAYGLTPLHLAADRGHL 126
Query: 479 DVVQYLIDEGADLNVLDKEKRSPLLLAASRG 509
++V+ L+ GAD+N DK ++ ++ G
Sbjct: 127 EIVEVLLKHGADVNAQDKFGKTAFDISIDNG 157
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 75/154 (48%), Gaps = 5/154 (3%)
Query: 400 SAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLN 459
A G V + + +GA ++ STP+HLA G +IV ++ + +N
Sbjct: 20 EAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLL-----KHGADVN 74
Query: 460 STDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVR 519
+ D TPLH AA ++V+ L+ GAD+N D +PL LAA RG + V L++
Sbjct: 75 ARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLK 134
Query: 520 NKANILLKDINRRNILHLLVLNGGGHIKEFAEEV 553
+ A++ +D + + + NG + E +++
Sbjct: 135 HGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 5/110 (4%)
Query: 159 SAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLN 218
A G V + + +GA ++ STP+HLA G +IV ++ + +N
Sbjct: 20 EAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLL-----KHGADVN 74
Query: 219 STDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
+ D TPLH AA ++V+ L+ GAD+N D +PL LAA RG
Sbjct: 75 ARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRG 124
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 72/161 (44%), Gaps = 15/161 (9%)
Query: 472 AAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINR 531
AA + D V+ L+ GAD+N D + +PL LAA G + V L+++ A++ +D +
Sbjct: 21 AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDG 80
Query: 532 RNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNT 591
LHL NG I E L+ GA +N ++ +PLHLAA G
Sbjct: 81 WTPLHLAADNGHLEIVEV------------LLKYGADVNAQDAYGLTPLHLAADRGHLEI 128
Query: 592 VKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQ 632
V+ LL + +N D G T I+ G I Q
Sbjct: 129 VEVLL---KHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 53/122 (43%), Gaps = 15/122 (12%)
Query: 502 LLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEN 561
LL AA G V L+ N A++ D LHL G I E
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEV------------ 65
Query: 562 LINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASK 621
L+ GA +N ++ +PLHLAA G V+ LL + +N D GLTPLH+A+
Sbjct: 66 LLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLL---KYGADVNAQDAYGLTPLHLAAD 122
Query: 622 EG 623
G
Sbjct: 123 RG 124
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 10/127 (7%)
Query: 262 LLAASRGGWK-------TNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQ 314
LL A+R G NG + +++ LHLA + I+ +LL++ D+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHG--ADVNA 75
Query: 315 GGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQ 374
G T LH+AA E +L+K +GA + + G P+H AA + +EV L+
Sbjct: 76 RDTDGWTPLHLAADNGHLEIVEVLLK-YGADVNAQDAYGLTPLHLAADRGHLEIVEVLLK 134
Query: 375 FGESIGC 381
G +
Sbjct: 135 HGADVNA 141
Score = 35.4 bits (80), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 60/148 (40%), Gaps = 14/148 (9%)
Query: 3 LLSVQSDNKNKSRLIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQ 62
LL ++ I ++G + +++ LHLA + I+ +LL++ D+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHG--ADVNA 75
Query: 63 GGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKN 122
G T LH+AA E +L+ +GA + + G P+H AA
Sbjct: 76 RDTDGWTPLHLAADNGHLEIVEVLLK------------YGADVNAQDAYGLTPLHLAADR 123
Query: 123 ASSKTMEVFLQFGESIGCSREEMISLFD 150
+ +EV L+ G + + + FD
Sbjct: 124 GHLEIVEVLLKHGADVNAQDKFGKTAFD 151
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 80/336 (23%), Positives = 150/336 (44%), Gaps = 38/336 (11%)
Query: 203 RLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLL 262
+LM L P V +++D +K TPLH AA ++R +VQ L+ GAD++ DK PL
Sbjct: 39 KLMALLTPLN--VNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLH 96
Query: 263 LAASRGGWKT------NGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGG 316
A S G ++ +G ++ + LH A N+V + +LL + ++
Sbjct: 97 NACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNC- 155
Query: 317 EHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFG 376
HG++A+ +A + E R+ + G SL +A D AK + +E+ + F
Sbjct: 156 -HGKSAVDMAPTPELRE--RLTYEFKGHSLLQAAREA-----DLAKVKKTLALEI-INFK 206
Query: 377 ESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACS 436
+ + +L A +L H + EL L+ GA ++ + D TP+H+A
Sbjct: 207 Q----PQSHETALHCAVASL------HPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAE 256
Query: 437 QGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDK 496
+ D++ ++ +N+ D+ T LH AA+ + L+ G+D +++
Sbjct: 257 RAHNDVMEVLHKHGAK-----MNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISL 311
Query: 497 EKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRR 532
+ A++ G + V ++ + D++ R
Sbjct: 312 QG-----FTAAQMGNEAVQQILSESTPMRTSDVDYR 342
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 112/241 (46%), Gaps = 24/241 (9%)
Query: 397 PLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLV 456
PLH A + V+L L+ GA + + P+H ACS G ++ L+ +
Sbjct: 61 PLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLL-----KHGA 115
Query: 457 CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLT 516
C+N+ D + TPLH AA +R +V L+ GAD +++ +S + +A + + LT
Sbjct: 116 CVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPT-PELRERLT 174
Query: 517 LVRNKANILLK-----DINR-RNILHLLVLN---GGGHIKEFAEEVAAVF-----LGENL 562
K + LL+ D+ + + L L ++N H VA++ + E L
Sbjct: 175 -YEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELL 233
Query: 563 INLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKE 622
+ GA +N KN +PLH+AA +N V ++L + +N D G T LH A+
Sbjct: 234 LRKGANVNEKNKDFMTPLHVAAERA-HNDVMEVL--HKHGAKMNALDSLGQTALHRAALA 290
Query: 623 G 623
G
Sbjct: 291 G 291
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 97/224 (43%), Gaps = 48/224 (21%)
Query: 444 RLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLL 503
+LM L P V +++D +K TPLH AA ++R +VQ L+ GAD++ DK PL
Sbjct: 39 KLMALLTPLN--VNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLH 96
Query: 504 LAASRGGWKTVLTLVRNKANILLKDI------------NRRNILHLLVLNGG-------- 543
A S G ++ L+++ A + D+ NR + LL+ +G
Sbjct: 97 NACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCH 156
Query: 544 -------GHIKEFAEEVAAVFLGENLINLG--------------ACINLKN-NSNESPLH 581
E E + F G +L+ IN K S+E+ LH
Sbjct: 157 GKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALH 216
Query: 582 --LAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
+A+ + + V +LL R +NE + + +TPLH+A++
Sbjct: 217 CAVASLHPKRKQVAELLL--RKGANVNEKNKDFMTPLHVAAERA 258
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 75/286 (26%), Positives = 108/286 (37%), Gaps = 32/286 (11%)
Query: 252 VLDKEKRSPLLLAASRGGWKTN--------GVNTRILNNKKQAVLHLATELNKVPILLIL 303
VL E + LL A+R G + VN + +K LHLA N+V I+ +L
Sbjct: 18 VLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLL 77
Query: 304 LQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKN 363
LQ+ D+ + G LH A Y E +L+K GA + + P+H+AA
Sbjct: 78 LQHG--ADVHAKDKGGLVPLHNACSYGHYEVTELLLK-HGACVNAMDLWQFTPLHEAASK 134
Query: 364 ASSKTMEVFLQFGES---IGCS-------------REEMISLFAAEGNLPLHSAVHGGDF 407
+ + L G + C RE + F L A D
Sbjct: 135 NRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLL---QAAREADL 191
Query: 408 KAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMT 467
V+ L Q T +H C+ +L R K +N + MT
Sbjct: 192 AKVKKTLALEIINFKQPQSHETALH--CAVASLHPKRKQVAELLLRKGANVNEKNKDFMT 249
Query: 468 PLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKT 513
PLH AA DV++ L GA +N LD ++ L AA G +T
Sbjct: 250 PLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQT 295
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 89/377 (23%), Positives = 143/377 (37%), Gaps = 78/377 (20%)
Query: 64 GEHGRTALHIA---------AIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYY 114
GE G++AL +A Y DE S E ++ + +
Sbjct: 1 GEFGKSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKST 60
Query: 115 PIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLK 174
P+H AA + +++ LQ G + D G +PLH+A G ++ EL LK
Sbjct: 61 PLHLAAGYNRVRIVQLLLQHGADVHAK--------DKGGLVPLHNACSYGHYEVTELLLK 112
Query: 175 SGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMF 234
GA ++ TP+H A S+ +++ L+ + LV + A M P +
Sbjct: 113 HGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAP--TPELR 170
Query: 235 DRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATEL 294
+R L E + LL A+R +L
Sbjct: 171 ER----------------LTYEFKGHSLLQAAR-----------------------EADL 191
Query: 295 NKVPILLILLQYKDMIDILQGGEHGRTALH--IAAIY-DFDECARILVKDFGASLKRACS 351
KV L L ++I+ Q H TALH +A+++ + A +L++ GA++
Sbjct: 192 AKVKKTLAL----EIINFKQPQSH-ETALHCAVASLHPKRKQVAELLLRK-GANVNEKNK 245
Query: 352 NGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVE 411
+ P+H AA+ A + MEV + G + + SL G LH A G +
Sbjct: 246 DFMTPLHVAAERAHNDVMEVLHKHGAKMNA----LDSL----GQTALHRAALAGHLQTCR 297
Query: 412 LCLKSGAK---ISTQQF 425
L L G+ IS Q F
Sbjct: 298 LLLSYGSDPSIISLQGF 314
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 69/289 (23%), Positives = 109/289 (37%), Gaps = 41/289 (14%)
Query: 3 LLSVQSDNKNKSRLIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQ 62
L + +S N+ K + + VN + +K LHLA N+V I+ +LLQ+ D+
Sbjct: 29 LEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHG--ADVHA 86
Query: 63 GGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNG-----YYPIH 117
+ G LH A Y E +L+ AC N + P+H
Sbjct: 87 KDKGGLVPLHNACSYGHYEVTELLLKHG-----------------ACVNAMDLWQFTPLH 129
Query: 118 DAAKNASSKTMEVFLQFGES---IGCSREEMISL-----------FDAEGNLPLHSAVHG 163
+AA + + L G + C + + + ++ +G+ L A
Sbjct: 130 EAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGH-SLLQAARE 188
Query: 164 GDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQ 223
D V+ L Q T +H C+ +L R K +N +
Sbjct: 189 ADLAKVKKTLALEIINFKQPQSHETALH--CAVASLHPKRKQVAELLLRKGANVNEKNKD 246
Query: 224 KMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKT 272
MTPLH AA DV++ L GA +N LD ++ L AA G +T
Sbjct: 247 FMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQT 295
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 88/239 (36%), Gaps = 60/239 (25%)
Query: 356 PIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLK 415
P+H AA + +++ LQ G + + G +PLH+A G ++ EL LK
Sbjct: 61 PLHLAAGYNRVRIVQLLLQHGADVHAKDKG--------GLVPLHNACSYGHYEVTELLLK 112
Query: 416 SGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTP------- 468
GA ++ TP+H A S+ +++ L+ + LV + A M P
Sbjct: 113 HGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRER 172
Query: 469 ------------------------------------------LHCAAMF---DRCDVVQY 483
LHCA R V +
Sbjct: 173 LTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAEL 232
Query: 484 LIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNG 542
L+ +GA++N +K+ +PL +AA R + L ++ A + D + LH L G
Sbjct: 233 LLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAG 291
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 13/114 (11%)
Query: 156 PLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLV 215
PLH A +E+ K GAK++ T +H A G L RL+ + ++
Sbjct: 250 PLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSII 309
Query: 216 CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGG 269
L A +M + VQ ++ E + D + R LL AS+ G
Sbjct: 310 SLQGFTAAQMG----------NEAVQQILSESTPMRTSDVDYR---LLEASKAG 350
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 78/154 (50%), Gaps = 5/154 (3%)
Query: 400 SAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLN 459
A G V + + +GA ++ + TP+HLA G L+IV ++ + +N
Sbjct: 20 EAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLL-----KNGADVN 74
Query: 460 STDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVR 519
+ D MTPL AA+F ++V+ L+ GAD+N D E +PL LAA G + V L++
Sbjct: 75 AVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLK 134
Query: 520 NKANILLKDINRRNILHLLVLNGGGHIKEFAEEV 553
N A++ +D + + + NG + E +++
Sbjct: 135 NGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 63/119 (52%), Gaps = 5/119 (4%)
Query: 150 DAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQ 209
DA G PLH A G + VE+ LK+GA ++ TP+ LA G L+IV ++
Sbjct: 44 DASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLL--- 100
Query: 210 PSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
+ +N+ D + TPLH AAMF ++V+ L+ GAD+N DK ++ ++ G
Sbjct: 101 --KNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNG 157
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 57/110 (51%), Gaps = 5/110 (4%)
Query: 159 SAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLN 218
A G V + + +GA ++ + TP+HLA G L+IV ++ + +N
Sbjct: 20 EAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLL-----KNGADVN 74
Query: 219 STDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
+ D MTPL AA+F ++V+ L+ GAD+N D E +PL LAA G
Sbjct: 75 AVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFG 124
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 9/116 (7%)
Query: 332 DECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFA 391
D+ RIL+ + GA + ++G+ P+H AA N + +EV L+ G +
Sbjct: 27 DDEVRILMAN-GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHA------ 79
Query: 392 AEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMF 447
G PL A G + VE+ LK+GA ++ + TP+HLA G L+IV ++
Sbjct: 80 --GMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLL 133
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 76/207 (36%), Gaps = 53/207 (25%)
Query: 426 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 485
DL + A G D VR++ +N+ DA TPLH AA ++V+ L+
Sbjct: 13 DLGKKLLEAARAGRDDEVRILM-----ANGADVNAEDASGWTPLHLAAFNGHLEIVEVLL 67
Query: 486 DEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGH 545
GAD+N +D +PL LAA G + V L++N
Sbjct: 68 KNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKN------------------------- 102
Query: 546 IKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFII 605
GA +N + +PLHLAA +G V+ LL + +
Sbjct: 103 --------------------GADVNANDMEGHTPLHLAAMFGHLEIVEVLL---KNGADV 139
Query: 606 NESDGEGLTPLHIASKEGFHYSVSIFQ 632
N D G T I+ G I Q
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 8/105 (7%)
Query: 102 GASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAV 161
GA + ++G+ P+H AA N + +EV L+ G + D G PL A
Sbjct: 37 GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNA--------VDHAGMTPLRLAA 88
Query: 162 HGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMF 206
G + VE+ LK+GA ++ + TP+HLA G L+IV ++
Sbjct: 89 LFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLL 133
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 65/157 (41%), Gaps = 34/157 (21%)
Query: 185 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 244
DL + A G D VR++ +N+ DA TPLH AA ++V+ L+
Sbjct: 13 DLGKKLLEAARAGRDDEVRILM-----ANGADVNAEDASGWTPLHLAAFNGHLEIVEVLL 67
Query: 245 DEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILL 304
GAD+N +D +PL LAA G L V +LL
Sbjct: 68 KNGADVNAVDHAGMTPLRLAALFG------------------------HLEIVEVLL--- 100
Query: 305 QYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKD 341
K+ D+ G T LH+AA++ E +L+K+
Sbjct: 101 --KNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN 135
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 59/132 (44%), Gaps = 9/132 (6%)
Query: 319 GRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGES 378
G T LH+AA E +L+K+ GA + G P+ AA + +EV L+ G
Sbjct: 47 GWTPLHLAAFNGHLEIVEVLLKN-GADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGAD 105
Query: 379 IGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQG 438
+ + EG+ PLH A G + VE+ LK+GA ++ Q T ++ G
Sbjct: 106 VNAND--------MEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNG 157
Query: 439 ALDIVRLMFNLQ 450
D+ ++ L
Sbjct: 158 NEDLAEILQKLN 169
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 63/119 (52%), Gaps = 5/119 (4%)
Query: 150 DAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQ 209
D G+ PLH A G + VE+ LK+GA ++ F STP+HLA +G L+IV ++
Sbjct: 44 DTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYG 103
Query: 210 PSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
+N+ D TPLH AA ++V+ L+ GAD+N DK ++ ++ G
Sbjct: 104 AD-----VNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNG 157
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 62/116 (53%), Gaps = 5/116 (4%)
Query: 394 GNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSE 453
G+ PLH A G + VE+ LK+GA ++ F STP+HLA +G L+IV ++
Sbjct: 47 GDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGAD- 105
Query: 454 KLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 509
+N+ D TPLH AA ++V+ L+ GAD+N DK ++ ++ G
Sbjct: 106 ----VNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNG 157
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 72/152 (47%), Gaps = 5/152 (3%)
Query: 398 LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC 457
L A G V + + +GA ++ + TP+HLA G L+IV ++ +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLL-----KNGAD 72
Query: 458 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTL 517
+N+ D TPLH AA ++V+ L+ GAD+N D +PL LAA G + V L
Sbjct: 73 VNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVL 132
Query: 518 VRNKANILLKDINRRNILHLLVLNGGGHIKEF 549
++ A++ +D + + + NG + E
Sbjct: 133 LKYGADVNAQDKFGKTAFDISIDNGNEDLAEI 164
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 72/160 (45%), Gaps = 13/160 (8%)
Query: 185 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 244
DL + A G D VR++ +N+ D TPLH AA ++V+ L+
Sbjct: 13 DLGKKLLEAARAGQDDEVRILM-----ANGADVNAEDTYGDTPLHLAARVGHLEIVEVLL 67
Query: 245 DEGADLNVLDKEKRSPLLLAASRGGWK------TNGVNTRILNNKKQAVLHLATELNKVP 298
GAD+N LD +PL LAA RG + G + + LHLA + +
Sbjct: 68 KNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLE 127
Query: 299 ILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARIL 338
I+ +LL+Y D+ + G+TA I+ ++ A IL
Sbjct: 128 IVEVLLKYG--ADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 58/126 (46%), Gaps = 12/126 (9%)
Query: 81 ECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGC 140
E AR + E +M GA + + G P+H AA+ + +EV L+ G +
Sbjct: 20 EAAR--AGQDDEVRILMAN--GADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNA 75
Query: 141 SREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALD 200
D G+ PLH A G + VE+ LK GA ++ STP+HLA G L+
Sbjct: 76 --------LDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLE 127
Query: 201 IVRLMF 206
IV ++
Sbjct: 128 IVEVLL 133
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 426 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 485
DL + A G D VR++ +N+ D TPLH AA ++V+ L+
Sbjct: 13 DLGKKLLEAARAGQDDEVRILM-----ANGADVNAEDTYGDTPLHLAARVGHLEIVEVLL 67
Query: 486 DEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHL 537
GAD+N LD +PL LAA RG + V L++ A++ D LHL
Sbjct: 68 KNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHL 119
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 9/129 (6%)
Query: 318 HGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGE 377
+G T LH+AA E +L+K+ GA + +G P+H AAK + +EV L++G
Sbjct: 46 YGDTPLHLAARVGHLEIVEVLLKN-GADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGA 104
Query: 378 SIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQ 437
+ ++ I G+ PLH A G + VE+ LK GA ++ Q T ++
Sbjct: 105 DVNA--DDTI------GSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDN 156
Query: 438 GALDIVRLM 446
G D+ ++
Sbjct: 157 GNEDLAEIL 165
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 68/161 (42%), Gaps = 15/161 (9%)
Query: 472 AAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINR 531
AA + D V+ L+ GAD+N D +PL LAA G + V L++N A++ D +
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSG 80
Query: 532 RNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNT 591
LHL G I E L+ GA +N + +PLHLAA G
Sbjct: 81 STPLHLAAKRGHLEIVEV------------LLKYGADVNADDTIGSTPLHLAADTGHLEI 128
Query: 592 VKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQ 632
V+ LL + +N D G T I+ G I Q
Sbjct: 129 VEVLL---KYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 56/122 (45%), Gaps = 15/122 (12%)
Query: 502 LLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEN 561
LL AA G V L+ N A++ +D LHL A V + + E
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHL------------AARVGHLEIVEV 65
Query: 562 LINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASK 621
L+ GA +N + S +PLHLAA+ G V+ LL + +N D G TPLH+A+
Sbjct: 66 LLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLL---KYGADVNADDTIGSTPLHLAAD 122
Query: 622 EG 623
G
Sbjct: 123 TG 124
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 9/122 (7%)
Query: 231 AAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWK------TNGVNTRILNNKK 284
AA + D V+ L+ GAD+N D +PL LAA G + NG + L+
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSG 80
Query: 285 QAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGA 344
LHLA + + I+ +LL+Y D+ G T LH+AA E +L+K +GA
Sbjct: 81 STPLHLAAKRGHLEIVEVLLKYG--ADVNADDTIGSTPLHLAADTGHLEIVEVLLK-YGA 137
Query: 345 SL 346
+
Sbjct: 138 DV 139
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 14/115 (12%)
Query: 36 LHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDW 95
LHLA + + I+ +LL+ ++ L G T LH+AA E +L+
Sbjct: 51 LHLAARVGHLEIVEVLLKNGADVNALD--FSGSTPLHLAAKRGHLEIVEVLLK------- 101
Query: 96 IMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFD 150
+GA + + G P+H AA + +EV L++G + + + FD
Sbjct: 102 -----YGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFD 151
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 70.1 bits (170), Expect = 3e-12, Method: Composition-based stats.
Identities = 38/107 (35%), Positives = 61/107 (57%), Gaps = 5/107 (4%)
Query: 149 FDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNL 208
+D G PLH A G + VE+ L++GA ++ + +TP+HLA S G L+IV ++
Sbjct: 31 YDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKY 90
Query: 209 QPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDK 255
+N+ DA +TPL+ AA + ++V+ L+ GAD+N DK
Sbjct: 91 GAD-----VNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDK 132
Score = 68.2 bits (165), Expect = 1e-11, Method: Composition-based stats.
Identities = 37/103 (35%), Positives = 59/103 (57%), Gaps = 5/103 (4%)
Query: 394 GNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSE 453
G PLH A G + VE+ L++GA ++ + +TP+HLA S G L+IV ++
Sbjct: 35 GRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGAD- 93
Query: 454 KLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDK 496
+N+ DA +TPL+ AA + ++V+ L+ GAD+N DK
Sbjct: 94 ----VNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDK 132
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 39/131 (29%), Positives = 64/131 (48%), Gaps = 5/131 (3%)
Query: 398 LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC 457
L A G V + + +GA + TP+H+A + G L+IV ++
Sbjct: 6 LLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGAD----- 60
Query: 458 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTL 517
+N+ D TPLH AA ++V+ L+ GAD+N D +PL LAA G + V L
Sbjct: 61 VNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVL 120
Query: 518 VRNKANILLKD 528
+++ A++ +D
Sbjct: 121 LKHGADVNAQD 131
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 50/161 (31%), Positives = 74/161 (45%), Gaps = 15/161 (9%)
Query: 472 AAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINR 531
AA + D V+ L+ GAD N D R+PL +AA+ G + V L+RN A++ D N
Sbjct: 9 AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNG 68
Query: 532 RNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNT 591
LHL A + + + E L+ GA +N K+ + +PL+LAA +G
Sbjct: 69 TTPLHL------------AASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEI 116
Query: 592 VKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQ 632
V+ LL + +N D G T I+ G I Q
Sbjct: 117 VEVLL---KHGADVNAQDKFGKTAFDISIDIGNEDLAEILQ 154
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/112 (31%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 157 LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC 216
L A G V + + +GA + TP+H+A + G L+IV ++
Sbjct: 6 LLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGAD----- 60
Query: 217 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
+N+ D TPLH AA ++V+ L+ GAD+N D +PL LAA G
Sbjct: 61 VNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWG 112
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 15/120 (12%)
Query: 318 HGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGE 377
+GRT LH+AA E +L+++ GA + +NG P+H AA + +EV L++G
Sbjct: 34 YGRTPLHMAAAVGHLEIVEVLLRN-GADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGA 92
Query: 378 SIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQ------FDLSTPV 431
+ A G PL+ A + G + VE+ LK GA ++ Q FD+S +
Sbjct: 93 DVNAKD--------ATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDI 144
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 26/131 (19%)
Query: 66 HGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASS 125
+GRT LH+AA E +L+ GA + +NG P+H AA
Sbjct: 34 YGRTPLHMAAAVGHLEIVEVLLRN------------GADVNAVDTNGTTPLHLAASLGHL 81
Query: 126 KTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQ-- 183
+ +EV L++G + DA G PL+ A + G + VE+ LK GA ++ Q
Sbjct: 82 EIVEVLLKYGADVNAK--------DATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKF 133
Query: 184 ----FDLSTPV 190
FD+S +
Sbjct: 134 GKTAFDISIDI 144
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 8/95 (8%)
Query: 112 GYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVEL 171
G P+H AA + +EV L+ G + D G PLH A G + VE+
Sbjct: 35 GRTPLHMAAAVGHLEIVEVLLRNGADVNA--------VDTNGTTPLHLAASLGHLEIVEV 86
Query: 172 CLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMF 206
LK GA ++ + TP++LA G L+IV ++
Sbjct: 87 LLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLL 121
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 8/127 (6%)
Query: 218 NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWK------ 271
N+ D TPLH AA ++V+ L+ GAD+N +D +PL LAAS G +
Sbjct: 29 NAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLL 88
Query: 272 TNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDF 331
G + + L+LA + I+ +LL++ D+ + G+TA I+
Sbjct: 89 KYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHG--ADVNAQDKFGKTAFDISIDIGN 146
Query: 332 DECARIL 338
++ A IL
Sbjct: 147 EDLAEIL 153
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 101/242 (41%), Gaps = 30/242 (12%)
Query: 378 SIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQ 437
S GC M+ A G L + K L KS A + Q D T +H ACS
Sbjct: 2 SEGCVSNLMVCNLAYSGKLE--------ELKESILADKSLATRTDQ--DSRTALHWACSA 51
Query: 438 GALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKE 497
G +IV + L V +N D +PLH AA R ++V+ L+ +GA +N +++
Sbjct: 52 GHTEIVEFLLQLG-----VPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQN 106
Query: 498 KRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVF 557
+PL AAS+ + + L+ AN KD +H G +
Sbjct: 107 GCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHI-------- 158
Query: 558 LGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLH 617
L+ A N+++ +PLHLA R K L+S +I N+ E TPL
Sbjct: 159 ----LLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENK---EEKTPLQ 211
Query: 618 IA 619
+A
Sbjct: 212 VA 213
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 81/168 (48%), Gaps = 14/168 (8%)
Query: 185 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 244
D T +H ACS G +IV + L V +N D +PLH AA R ++V+ L+
Sbjct: 40 DSRTALHWACSAGHTEIVEFLLQLG-----VPVNDKDDAGWSPLHIAASAGRDEIVKALL 94
Query: 245 DEGADLNVLDKEKRSPLLLAASRGGWK------TNGVNTRILNNKKQAVLHLATELNKVP 298
+GA +N +++ +PL AAS+ + G N ++ + +H A +
Sbjct: 95 GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLK 154
Query: 299 ILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASL 346
++ ILL YK +I G T LH+A + E A++LV GAS+
Sbjct: 155 MIHILLYYKASTNIQD--TEGNTPLHLACDEERVEEAKLLVSQ-GASI 199
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 85/202 (42%), Gaps = 27/202 (13%)
Query: 68 RTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKT 127
RTALH A E L+ G + G+ P+H AA +
Sbjct: 42 RTALHWACSAGHTEIVEFLLQ------------LGVPVNDKDDAGWSPLHIAASAGRDEI 89
Query: 128 MEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLS 187
++ L G ++ + G PLH A + + L+ GA + +
Sbjct: 90 VKALLGKGA--------QVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEA 141
Query: 188 TPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEG 247
T +H A ++G L ++ ++ + S N D + TPLH A +R + + L+ +G
Sbjct: 142 TAMHRAAAKGNLKMIHILLYYKAS-----TNIQDTEGNTPLHLACDEERVEEAKLLVSQG 196
Query: 248 ADLNVLDKEKRSPLLLAASRGG 269
A + + +KE+++PL +A +GG
Sbjct: 197 ASIYIENKEEKTPLQVA--KGG 216
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 92/224 (41%), Gaps = 40/224 (17%)
Query: 220 TDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRI 279
TD T LH A ++V++L+ G +N D SPL +AAS G I
Sbjct: 37 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAG-------RDEI 89
Query: 280 LNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILV 339
+ +A+L ++N V ++G T LH AA + E A +L+
Sbjct: 90 V----KALLGKGAQVNAV------------------NQNGCTPLHYAASKNRHEIAVMLL 127
Query: 340 KDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLH 399
+ GA+ +H AA + K + + L + S ++ EGN PLH
Sbjct: 128 -EGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKAST--------NIQDTEGNTPLH 178
Query: 400 SAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIV 443
A + +L + GA I + + TP+ +A +G L ++
Sbjct: 179 LACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA--KGGLGLI 220
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 15/110 (13%)
Query: 516 TLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNS 575
+++ +K+ D + R LH G I EF L+ LG +N K+++
Sbjct: 26 SILADKSLATRTDQDSRTALHWACSAGHTEIVEF------------LLQLGVPVNDKDDA 73
Query: 576 NESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFH 625
SPLH+AA GR VK LL +G+ + N + G TPLH A+ + H
Sbjct: 74 GWSPLHIAASAGRDEIVKALLG--KGAQV-NAVNQNGCTPLHYAASKNRH 120
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 8 SDNKNKSRLIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHG 67
S N+++ ++ G N ++ + +H A + ++ ILL YK +I G
Sbjct: 116 SKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQD--TEG 173
Query: 68 RTALHIAAIYDFDECARILVSE 89
T LH+A + E A++LVS+
Sbjct: 174 NTPLHLACDEERVEEAKLLVSQ 195
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 100/240 (41%), Gaps = 30/240 (12%)
Query: 380 GCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGA 439
GC M+ A G L + K L KS A + Q D T +H ACS G
Sbjct: 3 GCVSNLMVCNLAYSGKLE--------ELKESILADKSLATRTDQ--DSRTALHWACSAGH 52
Query: 440 LDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKR 499
+IV + L V +N D +PLH AA R ++V+ L+ +GA +N +++
Sbjct: 53 TEIVEFLLQLG-----VPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGC 107
Query: 500 SPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLG 559
+PL AAS+ + + L+ AN KD +H G +
Sbjct: 108 TPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHI---------- 157
Query: 560 ENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIA 619
L+ A N+++ +PLHLA R K L+S +I N+ E TPL +A
Sbjct: 158 --LLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENK---EEKTPLQVA 212
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 83/168 (49%), Gaps = 14/168 (8%)
Query: 185 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 244
D T +H ACS G +IV + L V +N D +PLH AA R ++V+ L+
Sbjct: 39 DSRTALHWACSAGHTEIVEFLLQLG-----VPVNDKDDAGWSPLHIAASAGRDEIVKALL 93
Query: 245 DEGADLNVLDKEKRSPLLLAASRGGWK------TNGVNTRILNNKKQAVLHLATELNKVP 298
+GA +N +++ +PL AAS+ + G N ++ + +H A +
Sbjct: 94 GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLK 153
Query: 299 ILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASL 346
++ ILL YK +I Q E G T LH+A + E A++LV GAS+
Sbjct: 154 MIHILLYYKASTNI-QDTE-GNTPLHLACDEERVEEAKLLVSQ-GASI 198
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 84/202 (41%), Gaps = 27/202 (13%)
Query: 68 RTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKT 127
RTALH A E L+ G + G+ P+H AA +
Sbjct: 41 RTALHWACSAGHTEIVEFLLQ------------LGVPVNDKDDAGWSPLHIAASAGRDEI 88
Query: 128 MEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLS 187
++ L G + + G PLH A + + L+ GA + +
Sbjct: 89 VKALLGKGAQVNA--------VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEA 140
Query: 188 TPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEG 247
T +H A ++G L ++ ++ + S N D + TPLH A +R + + L+ +G
Sbjct: 141 TAMHRAAAKGNLKMIHILLYYKAS-----TNIQDTEGNTPLHLACDEERVEEAKLLVSQG 195
Query: 248 ADLNVLDKEKRSPLLLAASRGG 269
A + + +KE+++PL +A +GG
Sbjct: 196 ASIYIENKEEKTPLQVA--KGG 215
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 15/110 (13%)
Query: 516 TLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNS 575
+++ +K+ D + R LH G I EF L+ LG +N K+++
Sbjct: 25 SILADKSLATRTDQDSRTALHWACSAGHTEIVEF------------LLQLGVPVNDKDDA 72
Query: 576 NESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFH 625
SPLH+AA GR VK LL +G+ + N + G TPLH A+ + H
Sbjct: 73 GWSPLHIAASAGRDEIVKALLG--KGAQV-NAVNQNGCTPLHYAASKNRH 119
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 92/224 (41%), Gaps = 40/224 (17%)
Query: 220 TDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRI 279
TD T LH A ++V++L+ G +N D SPL +AAS G I
Sbjct: 36 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAG-------RDEI 88
Query: 280 LNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILV 339
+ +A+L ++N V ++G T LH AA + E A +L+
Sbjct: 89 V----KALLGKGAQVNAV------------------NQNGCTPLHYAASKNRHEIAVMLL 126
Query: 340 KDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLH 399
+ GA+ +H AA + K + + L + S ++ EGN PLH
Sbjct: 127 -EGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKAST--------NIQDTEGNTPLH 177
Query: 400 SAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIV 443
A + +L + GA I + + TP+ +A +G L ++
Sbjct: 178 LACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA--KGGLGLI 219
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 8 SDNKNKSRLIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHG 67
S N+++ ++ G N ++ + +H A + ++ ILL YK +I Q E G
Sbjct: 115 SKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNI-QDTE-G 172
Query: 68 RTALHIAAIYDFDECARILVSE 89
T LH+A + E A++LVS+
Sbjct: 173 NTPLHLACDEERVEEAKLLVSQ 194
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 71/151 (47%), Gaps = 13/151 (8%)
Query: 118 DAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGA 177
+AA+ + + + G + + DA G PLH A G + VE+ LK GA
Sbjct: 20 EAARAGQDDEVRILMANGADVNAT--------DASGLTPLHLAATYGHLEIVEVLLKHGA 71
Query: 178 KISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRC 237
++ STP+HLA G L+IV ++ +N+ D TPLH AA+
Sbjct: 72 DVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGAD-----VNAVDTWGDTPLHLAAIMGHL 126
Query: 238 DVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
++V+ L+ GAD+N DK ++ ++ G
Sbjct: 127 EIVEVLLKHGADVNAQDKFGKTAFDISIDNG 157
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 13/151 (8%)
Query: 359 DAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGA 418
+AA+ + + + G + + A G PLH A G + VE+ LK GA
Sbjct: 20 EAARAGQDDEVRILMANGADVNATD--------ASGLTPLHLAATYGHLEIVEVLLKHGA 71
Query: 419 KISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRC 478
++ STP+HLA G L+IV ++ +N+ D TPLH AA+
Sbjct: 72 DVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGAD-----VNAVDTWGDTPLHLAAIMGHL 126
Query: 479 DVVQYLIDEGADLNVLDKEKRSPLLLAASRG 509
++V+ L+ GAD+N DK ++ ++ G
Sbjct: 127 EIVEVLLKHGADVNAQDKFGKTAFDISIDNG 157
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 76/153 (49%), Gaps = 5/153 (3%)
Query: 401 AVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNS 460
A G V + + +GA ++ TP+HLA + G L+IV ++ +N+
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGAD-----VNA 75
Query: 461 TDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRN 520
D TPLH AA+ ++V+ L+ GAD+N +D +PL LAA G + V L+++
Sbjct: 76 IDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKH 135
Query: 521 KANILLKDINRRNILHLLVLNGGGHIKEFAEEV 553
A++ +D + + + NG + E +++
Sbjct: 136 GADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 68/130 (52%), Gaps = 8/130 (6%)
Query: 217 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKT---- 272
+N+TDA +TPLH AA + ++V+ L+ GAD+N +D +PL LAA G +
Sbjct: 40 VNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVL 99
Query: 273 --NGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYD 330
+G + ++ LHLA + + I+ +LL++ D+ + G+TA I+
Sbjct: 100 LKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHG--ADVNAQDKFGKTAFDISIDNG 157
Query: 331 FDECARILVK 340
++ A IL K
Sbjct: 158 NEDLAEILQK 167
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 71/161 (44%), Gaps = 15/161 (9%)
Query: 472 AAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINR 531
AA + D V+ L+ GAD+N D +PL LAA+ G + V L+++ A++ DI
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXG 80
Query: 532 RNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNT 591
LHL L G I E L+ GA +N + ++PLHLAA G
Sbjct: 81 STPLHLAALIGHLEIVEV------------LLKHGADVNAVDTWGDTPLHLAAIMGHLEI 128
Query: 592 VKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQ 632
V+ LL + +N D G T I+ G I Q
Sbjct: 129 VEVLL---KHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 20/118 (16%)
Query: 36 LHLATELNKVPILLILLQYK---DMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPE 92
LHLA + I+ +LL++ + IDI G T LH+AA+ E +L+
Sbjct: 51 LHLAATYGHLEIVEVLLKHGADVNAIDIX-----GSTPLHLAALIGHLEIVEVLLKH--- 102
Query: 93 CDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFD 150
GA + + G P+H AA + +EV L+ G + + + FD
Sbjct: 103 ---------GADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFD 151
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 71/151 (47%), Gaps = 13/151 (8%)
Query: 118 DAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGA 177
+AA+ + + + G + + DA G PLH A G + VE+ LK GA
Sbjct: 20 EAARAGQDDEVRILMANGADVNAT--------DASGLTPLHLAATYGHLEIVEVLLKHGA 71
Query: 178 KISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRC 237
++ STP+HLA G L+IV ++ +N+ D TPLH AA+
Sbjct: 72 DVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGAD-----VNAVDTWGDTPLHLAAIMGHL 126
Query: 238 DVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
++V+ L+ GAD+N DK ++ ++ G
Sbjct: 127 EIVEVLLKHGADVNAQDKFGKTAFDISIDNG 157
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 76/153 (49%), Gaps = 5/153 (3%)
Query: 401 AVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNS 460
A G V + + +GA ++ TP+HLA + G L+IV ++ +N+
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGAD-----VNA 75
Query: 461 TDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRN 520
D TPLH AA+ ++V+ L+ GAD+N +D +PL LAA G + V L+++
Sbjct: 76 IDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKH 135
Query: 521 KANILLKDINRRNILHLLVLNGGGHIKEFAEEV 553
A++ +D + + + NG + E +++
Sbjct: 136 GADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 13/151 (8%)
Query: 359 DAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGA 418
+AA+ + + + G + + A G PLH A G + VE+ LK GA
Sbjct: 20 EAARAGQDDEVRILMANGADVNATD--------ASGLTPLHLAATYGHLEIVEVLLKHGA 71
Query: 419 KISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRC 478
++ STP+HLA G L+IV ++ +N+ D TPLH AA+
Sbjct: 72 DVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGAD-----VNAVDTWGDTPLHLAAIMGHL 126
Query: 479 DVVQYLIDEGADLNVLDKEKRSPLLLAASRG 509
++V+ L+ GAD+N DK ++ ++ G
Sbjct: 127 EIVEVLLKHGADVNAQDKFGKTAFDISIDNG 157
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 68/130 (52%), Gaps = 8/130 (6%)
Query: 217 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKT---- 272
+N+TDA +TPLH AA + ++V+ L+ GAD+N +D +PL LAA G +
Sbjct: 40 VNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVL 99
Query: 273 --NGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYD 330
+G + ++ LHLA + + I+ +LL++ D+ + G+TA I+
Sbjct: 100 LKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHG--ADVNAQDKFGKTAFDISIDNG 157
Query: 331 FDECARILVK 340
++ A IL K
Sbjct: 158 NEDLAEILQK 167
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 71/161 (44%), Gaps = 15/161 (9%)
Query: 472 AAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINR 531
AA + D V+ L+ GAD+N D +PL LAA+ G + V L+++ A++ DI
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMG 80
Query: 532 RNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNT 591
LHL L G I E L+ GA +N + ++PLHLAA G
Sbjct: 81 STPLHLAALIGHLEIVEV------------LLKHGADVNAVDTWGDTPLHLAAIMGHLEI 128
Query: 592 VKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQ 632
V+ LL + +N D G T I+ G I Q
Sbjct: 129 VEVLL---KHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 20/118 (16%)
Query: 36 LHLATELNKVPILLILLQYK---DMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPE 92
LHLA + I+ +LL++ + IDI+ G T LH+AA+ E +L+
Sbjct: 51 LHLAATYGHLEIVEVLLKHGADVNAIDIM-----GSTPLHLAALIGHLEIVEVLLKH--- 102
Query: 93 CDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFD 150
GA + + G P+H AA + +EV L+ G + + + FD
Sbjct: 103 ---------GADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFD 151
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 76/154 (49%), Gaps = 5/154 (3%)
Query: 400 SAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLN 459
A G V + + +GA ++ + TP+HLA +G L+IV ++ +N
Sbjct: 20 EAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGAD-----VN 74
Query: 460 STDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVR 519
+ D TPLH AA++ ++V+ L+ GAD+N D +PL LAA G + V L++
Sbjct: 75 AADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLK 134
Query: 520 NKANILLKDINRRNILHLLVLNGGGHIKEFAEEV 553
A++ +D + + + NG + E +++
Sbjct: 135 YGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 60/119 (50%), Gaps = 5/119 (4%)
Query: 150 DAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQ 209
D G PLH A G + VE+ LK GA ++ TP+HLA G L+IV ++
Sbjct: 44 DDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLL--- 100
Query: 210 PSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
+ +N+TD TPLH AA ++V+ L+ GAD+N DK ++ ++ G
Sbjct: 101 --KNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNG 157
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 5/110 (4%)
Query: 159 SAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLN 218
A G V + + +GA ++ + TP+HLA +G L+IV ++ +N
Sbjct: 20 EAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGAD-----VN 74
Query: 219 STDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
+ D TPLH AA++ ++V+ L+ GAD+N D +PL LAA G
Sbjct: 75 AADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAG 124
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 60/116 (51%), Gaps = 9/116 (7%)
Query: 332 DECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFA 391
D+ RIL+ + GA + +G P+H AA + +EV L+ G + + ++M
Sbjct: 27 DDEVRILMAN-GADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAA-DKM----- 79
Query: 392 AEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMF 447
G+ PLH A G + VE+ LK+GA ++ TP+HLA G L+IV ++
Sbjct: 80 --GDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLL 133
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 58/126 (46%), Gaps = 12/126 (9%)
Query: 81 ECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGC 140
E AR + E +M GA + +G P+H AA + +EV L+ G +
Sbjct: 20 EAAR--AGQDDEVRILMAN--GADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNA 75
Query: 141 SREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALD 200
+ D G+ PLH A G + VE+ LK+GA ++ TP+HLA G L+
Sbjct: 76 A--------DKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLE 127
Query: 201 IVRLMF 206
IV ++
Sbjct: 128 IVEVLL 133
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 58/122 (47%), Gaps = 15/122 (12%)
Query: 502 LLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEN 561
LL AA G V L+ N A++ +D + + LHL + G I E
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEV------------ 65
Query: 562 LINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASK 621
L+ GA +N + ++PLHLAA YG V+ LL + +N +D G TPLH+A+
Sbjct: 66 LLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLL---KNGADVNATDTYGFTPLHLAAD 122
Query: 622 EG 623
G
Sbjct: 123 AG 124
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 30/149 (20%)
Query: 231 AAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHL 290
AA + D V+ L+ GAD+N D ++PL LAA +G HL
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKG--------------------HL 60
Query: 291 ATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRAC 350
I+ +LL++ D+ + G T LH+AA+Y E +L+K+ GA +
Sbjct: 61 -------EIVEVLLKHG--ADVNAADKMGDTPLHLAALYGHLEIVEVLLKN-GADVNATD 110
Query: 351 SNGYYPIHDAAKNASSKTMEVFLQFGESI 379
+ G+ P+H AA + +EV L++G +
Sbjct: 111 TYGFTPLHLAADAGHLEIVEVLLKYGADV 139
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 72/161 (44%), Gaps = 15/161 (9%)
Query: 472 AAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINR 531
AA + D V+ L+ GAD+N D ++PL LAA +G + V L+++ A++ D
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMG 80
Query: 532 RNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNT 591
LHL L G H+ E+ V L GA +N + +PLHLAA G
Sbjct: 81 DTPLHLAALYG--HL-----EIVEVLLKN-----GADVNATDTYGFTPLHLAADAGHLEI 128
Query: 592 VKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQ 632
V+ LL + +N D G T I+ G I Q
Sbjct: 129 VEVLL---KYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 64/148 (43%), Gaps = 14/148 (9%)
Query: 3 LLSVQSDNKNKSRLIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQ 62
LL ++ I ++G + ++ + LHLA + I+ +LL++ D+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHG--ADVNA 75
Query: 63 GGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKN 122
+ G T LH+AA+Y E +L+ GA + + G+ P+H AA
Sbjct: 76 ADKMGDTPLHLAALYGHLEIVEVLLKN------------GADVNATDTYGFTPLHLAADA 123
Query: 123 ASSKTMEVFLQFGESIGCSREEMISLFD 150
+ +EV L++G + + + FD
Sbjct: 124 GHLEIVEVLLKYGADVNAQDKFGKTAFD 151
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 74/131 (56%), Gaps = 6/131 (4%)
Query: 398 LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC 457
L +A G D + V + + +GA ++ + TP+HLA + G L+IV ++ +
Sbjct: 11 LEAAAAGQDDE-VRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLL-----KNGAD 64
Query: 458 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTL 517
+N++D+ +TPLH AA ++V+ L+ GAD+N D+ +PL LAA G + V L
Sbjct: 65 VNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVL 124
Query: 518 VRNKANILLKD 528
+++ A++ +D
Sbjct: 125 LKHGADVNAQD 135
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 65/133 (48%), Gaps = 10/133 (7%)
Query: 315 GGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQ 374
G + G+ L AA DE RIL+ + GA + NG P+H AA N + +EV L+
Sbjct: 3 GQDLGKKLLEAAAAGQDDEV-RILMAN-GADVNATDDNGLTPLHLAAANGQLEIVEVLLK 60
Query: 375 FGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLA 434
G + S I+ PLH A + G + VE+ LK GA ++ TP+HLA
Sbjct: 61 NGADVNASDSAGIT--------PLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLA 112
Query: 435 CSQGALDIVRLMF 447
G L+IV ++
Sbjct: 113 ALSGQLEIVEVLL 125
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 58/109 (53%), Gaps = 5/109 (4%)
Query: 146 ISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLM 205
++ D G PLH A G + VE+ LK+GA ++ TP+HLA G L+IV ++
Sbjct: 32 VNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVL 91
Query: 206 FNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLD 254
+ +N+ D TPLH AA+ + ++V+ L+ GAD+N D
Sbjct: 92 L-----KHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQD 135
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 63/112 (56%), Gaps = 6/112 (5%)
Query: 157 LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC 216
L +A G D + V + + +GA ++ + TP+HLA + G L+IV ++ +
Sbjct: 11 LEAAAAGQDDE-VRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLL-----KNGAD 64
Query: 217 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
+N++D+ +TPLH AA ++V+ L+ GAD+N D+ +PL LAA G
Sbjct: 65 VNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSG 116
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 55/102 (53%), Gaps = 5/102 (4%)
Query: 394 GNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSE 453
G PLH A G + VE+ LK+GA ++ TP+HLA G L+IV ++ +
Sbjct: 39 GLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLL-----K 93
Query: 454 KLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLD 495
+N+ D TPLH AA+ + ++V+ L+ GAD+N D
Sbjct: 94 HGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQD 135
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 66/144 (45%), Gaps = 21/144 (14%)
Query: 63 GGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKN 122
G + G+ L AA DE RIL++ GA + NG P+H AA N
Sbjct: 3 GQDLGKKLLEAAAAGQDDEV-RILMAN------------GADVNATDDNGLTPLHLAAAN 49
Query: 123 ASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQ 182
+ +EV L+ G + S D+ G PLH A + G + VE+ LK GA ++
Sbjct: 50 GQLEIVEVLLKNGADVNAS--------DSAGITPLHLAAYDGHLEIVEVLLKHGADVNAY 101
Query: 183 QFDLSTPVHLACSQGALDIVRLMF 206
TP+HLA G L+IV ++
Sbjct: 102 DRAGWTPLHLAALSGQLEIVEVLL 125
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 73/161 (45%), Gaps = 15/161 (9%)
Query: 472 AAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINR 531
AA + D V+ L+ GAD+N D +PL LAA+ G + V L++N A++ D
Sbjct: 13 AAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAG 72
Query: 532 RNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNT 591
LHL +G I E L+ GA +N + + +PLHLAA G+
Sbjct: 73 ITPLHLAAYDGHLEIVEV------------LLKHGADVNAYDRAGWTPLHLAALSGQLEI 120
Query: 592 VKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQ 632
V+ LL + +N D GLT I+ +G I Q
Sbjct: 121 VEVLL---KHGADVNAQDALGLTAFDISINQGQEDLAEILQ 158
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 59/117 (50%), Gaps = 5/117 (4%)
Query: 426 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 485
DL + A + G D VR++ +N+TD +TPLH AA + ++V+ L+
Sbjct: 5 DLGKKLLEAAAAGQDDEVRILM-----ANGADVNATDDNGLTPLHLAAANGQLEIVEVLL 59
Query: 486 DEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNG 542
GAD+N D +PL LAA G + V L+++ A++ D LHL L+G
Sbjct: 60 KNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSG 116
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 9/130 (6%)
Query: 317 EHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFG 376
++G T LH+AA E +L+K+ GA + + S G P+H AA + + +EV L+ G
Sbjct: 37 DNGLTPLHLAAANGQLEIVEVLLKN-GADVNASDSAGITPLHLAAYDGHLEIVEVLLKHG 95
Query: 377 ESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACS 436
+ + G PLH A G + VE+ LK GA ++ Q T ++ +
Sbjct: 96 ADVNA--------YDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISIN 147
Query: 437 QGALDIVRLM 446
QG D+ ++
Sbjct: 148 QGQEDLAEIL 157
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 20/141 (14%)
Query: 65 EHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNAS 124
++G T LH+AA + Q E +++K+ GA + + S G P+H AA +
Sbjct: 37 DNGLTPLHLAA-----------ANGQLEIVEVLLKN-GADVNASDSAGITPLHLAAYDGH 84
Query: 125 SKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQF 184
+ +EV L+ G + +D G PLH A G + VE+ LK GA ++ Q
Sbjct: 85 LEIVEVLLKHGADVNA--------YDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDA 136
Query: 185 DLSTPVHLACSQGALDIVRLM 205
T ++ +QG D+ ++
Sbjct: 137 LGLTAFDISINQGQEDLAEIL 157
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 11/128 (8%)
Query: 185 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 244
DL + A + G D VR++ +N+TD +TPLH AA + ++V+ L+
Sbjct: 5 DLGKKLLEAAAAGQDDEVRILM-----ANGADVNATDDNGLTPLHLAAANGQLEIVEVLL 59
Query: 245 DEGADLNVLDKEKRSPLLLAASRGGWKT------NGVNTRILNNKKQAVLHLATELNKVP 298
GAD+N D +PL LAA G + +G + + LHLA ++
Sbjct: 60 KNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLE 119
Query: 299 ILLILLQY 306
I+ +LL++
Sbjct: 120 IVEVLLKH 127
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 56/122 (45%), Gaps = 15/122 (12%)
Query: 502 LLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEN 561
LL AA+ G V L+ N A++ D N LHL NG I E
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEV------------ 57
Query: 562 LINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASK 621
L+ GA +N +++ +PLHLAA G V+ LL + +N D G TPLH+A+
Sbjct: 58 LLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLL---KHGADVNAYDRAGWTPLHLAAL 114
Query: 622 EG 623
G
Sbjct: 115 SG 116
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 74/151 (49%), Gaps = 13/151 (8%)
Query: 118 DAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGA 177
+AA+ + + + G + + D G PLH A + G + VE+ LK+GA
Sbjct: 20 EAARAGRDDEVRILMANGADVNAA--------DVVGWTPLHLAAYWGHLEIVEVLLKNGA 71
Query: 178 KISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRC 237
++ STP+HLA G L+IV ++ + +N+ D +TPLH AA
Sbjct: 72 DVNAYDTLGSTPLHLAAHFGHLEIVEVLL-----KNGADVNAKDDNGITPLHLAANRGHL 126
Query: 238 DVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
++V+ L+ GAD+N DK ++ ++ + G
Sbjct: 127 EIVEVLLKYGADVNAQDKFGKTAFDISINNG 157
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 76/153 (49%), Gaps = 5/153 (3%)
Query: 401 AVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNS 460
A G V + + +GA ++ TP+HLA G L+IV ++ + +N+
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLL-----KNGADVNA 75
Query: 461 TDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRN 520
D TPLH AA F ++V+ L+ GAD+N D +PL LAA+RG + V L++
Sbjct: 76 YDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKY 135
Query: 521 KANILLKDINRRNILHLLVLNGGGHIKEFAEEV 553
A++ +D + + + NG + E +++
Sbjct: 136 GADVNAQDKFGKTAFDISINNGNEDLAEILQKL 168
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 63/116 (54%), Gaps = 9/116 (7%)
Query: 332 DECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFA 391
D+ RIL+ + GA + A G+ P+H AA + +EV L+ G + +
Sbjct: 27 DDEVRILMAN-GADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNA--------YD 77
Query: 392 AEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMF 447
G+ PLH A H G + VE+ LK+GA ++ + + TP+HLA ++G L+IV ++
Sbjct: 78 TLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLL 133
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 8/105 (7%)
Query: 102 GASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAV 161
GA + A G+ P+H AA + +EV L+ G + +D G+ PLH A
Sbjct: 37 GADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNA--------YDTLGSTPLHLAA 88
Query: 162 HGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMF 206
H G + VE+ LK+GA ++ + + TP+HLA ++G L+IV ++
Sbjct: 89 HFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLL 133
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 55/112 (49%), Gaps = 5/112 (4%)
Query: 426 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 485
DL + A G D VR++ +N+ D TPLH AA + ++V+ L+
Sbjct: 13 DLGKKLLEAARAGRDDEVRILM-----ANGADVNAADVVGWTPLHLAAYWGHLEIVEVLL 67
Query: 486 DEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHL 537
GAD+N D +PL LAA G + V L++N A++ KD N LHL
Sbjct: 68 KNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHL 119
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 63/151 (41%), Gaps = 30/151 (19%)
Query: 231 AAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHL 290
AA R D V+ L+ GAD+N D +PL LAA G
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWG---------------------- 58
Query: 291 ATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRAC 350
L V +LL K+ D+ G T LH+AA + E +L+K+ GA +
Sbjct: 59 --HLEIVEVLL-----KNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKN-GADVNAKD 110
Query: 351 SNGYYPIHDAAKNASSKTMEVFLQFGESIGC 381
NG P+H AA + +EV L++G +
Sbjct: 111 DNGITPLHLAANRGHLEIVEVLLKYGADVNA 141
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 14/115 (12%)
Query: 36 LHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDW 95
LHLA + I+ +LL K+ D+ G T LH+AA + E +L+
Sbjct: 51 LHLAAYWGHLEIVEVLL--KNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKN------ 102
Query: 96 IMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFD 150
GA + NG P+H AA + +EV L++G + + + FD
Sbjct: 103 ------GADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFD 151
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 77/156 (49%), Gaps = 5/156 (3%)
Query: 398 LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC 457
L A G V + + +GA ++ + TP+HL + G L+I+ ++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAAD----- 72
Query: 458 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTL 517
+N++D TPLH AA ++V+ L+ GAD+N +D + +PL LAA G + V L
Sbjct: 73 VNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVL 132
Query: 518 VRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEV 553
++ A++ +D + + + NG + E +++
Sbjct: 133 LKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 70/151 (46%), Gaps = 13/151 (8%)
Query: 118 DAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGA 177
+AA+ + + + G + + D G PLH V+ G + +E+ LK A
Sbjct: 20 EAARAGQDDEVRILMANGADVNAN--------DWFGITPLHLVVNNGHLEIIEVLLKYAA 71
Query: 178 KISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRC 237
++ TP+HLA +G L+IV ++ +N+ D Q TPLH AA
Sbjct: 72 DVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGAD-----VNAMDYQGYTPLHLAAEDGHL 126
Query: 238 DVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
++V+ L+ GAD+N DK ++ ++ G
Sbjct: 127 EIVEVLLKYGADVNAQDKFGKTAFDISIDNG 157
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 5/112 (4%)
Query: 157 LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC 216
L A G V + + +GA ++ + TP+HL + G L+I+ ++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAAD----- 72
Query: 217 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
+N++D TPLH AA ++V+ L+ GAD+N +D + +PL LAA G
Sbjct: 73 VNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDG 124
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 9/116 (7%)
Query: 332 DECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFA 391
D+ RIL+ + GA + G P+H N + +EV L++ + S +
Sbjct: 27 DDEVRILMAN-GADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKS------ 79
Query: 392 AEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMF 447
G PLH A + G + VE+ LK GA ++ + TP+HLA G L+IV ++
Sbjct: 80 --GWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLL 133
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 8/105 (7%)
Query: 102 GASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAV 161
GA + G P+H N + +EV L++ + S D G PLH A
Sbjct: 37 GADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNAS--------DKSGWTPLHLAA 88
Query: 162 HGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMF 206
+ G + VE+ LK GA ++ + TP+HLA G L+IV ++
Sbjct: 89 YRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLL 133
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Query: 288 LHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLK 347
LHL + I+ +LL+Y D+ + G T LH+AA E +L+K +GA +
Sbjct: 51 LHLVVNNGHLEIIEVLLKYA--ADVNASDKSGWTPLHLAAYRGHLEIVEVLLK-YGADVN 107
Query: 348 RACSNGYYPIHDAAKNASSKTMEVFLQFGESIGC 381
GY P+H AA++ + +EV L++G +
Sbjct: 108 AMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNA 141
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 74/207 (35%), Gaps = 53/207 (25%)
Query: 426 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 485
DL + A G D VR++ +N+ D +TPLH ++++ L+
Sbjct: 13 DLGKKLLEAARAGQDDEVRILM-----ANGADVNANDWFGITPLHLVVNNGHLEIIEVLL 67
Query: 486 DEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGH 545
AD+N DK +PL LAA RG HL ++
Sbjct: 68 KYAADVNASDKSGWTPLHLAAYRG--------------------------HLEIV----- 96
Query: 546 IKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFII 605
E L+ GA +N + +PLHLAA G V+ LL + +
Sbjct: 97 --------------EVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLL---KYGADV 139
Query: 606 NESDGEGLTPLHIASKEGFHYSVSIFQ 632
N D G T I+ G I Q
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 14/115 (12%)
Query: 36 LHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDW 95
LHL + I+ +LL+Y D+ + G T LH+AA E +L+
Sbjct: 51 LHLVVNNGHLEIIEVLLKYA--ADVNASDKSGWTPLHLAAYRGHLEIVEVLLK------- 101
Query: 96 IMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFD 150
+GA + GY P+H AA++ + +EV L++G + + + FD
Sbjct: 102 -----YGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFD 151
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 100/240 (41%), Gaps = 30/240 (12%)
Query: 380 GCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGA 439
GC MI A G L + K L KS A + Q D T +H ACS G
Sbjct: 3 GCVSNIMICNLAYSGKLD--------ELKERILADKSLATRTDQ--DSRTALHWACSAGH 52
Query: 440 LDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKR 499
+IV + L V +N D +PLH AA R ++V+ L+ +GA +N +++
Sbjct: 53 TEIVEFLLQLG-----VPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGC 107
Query: 500 SPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLG 559
+PL AAS+ + + L+ AN KD +H G +
Sbjct: 108 TPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHI---------- 157
Query: 560 ENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIA 619
L+ A N+++ +PLHLA R K L++ +I N+ E TPL +A
Sbjct: 158 --LLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENK---EEKTPLQVA 212
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 85/202 (42%), Gaps = 27/202 (13%)
Query: 68 RTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKT 127
RTALH A E L+ G + G+ P+H AA +
Sbjct: 41 RTALHWACSAGHTEIVEFLLQ------------LGVPVNDKDDAGWSPLHIAASAGRDEI 88
Query: 128 MEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLS 187
++ L G + + G PLH A + + L+ GA + +
Sbjct: 89 VKALLVKGAHVNA--------VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDA 140
Query: 188 TPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEG 247
T +H A ++G L +V ++ + S N D + TPLH A +R + ++L+ +G
Sbjct: 141 TAMHRAAAKGNLKMVHILLFYKAS-----TNIQDTEGNTPLHLACDEERVEEAKFLVTQG 195
Query: 248 ADLNVLDKEKRSPLLLAASRGG 269
A + + +KE+++PL +A +GG
Sbjct: 196 ASIYIENKEEKTPLQVA--KGG 215
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 72/154 (46%), Gaps = 11/154 (7%)
Query: 150 DAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQ 209
D + LH A G + VE L+ G ++ + +P+H+A S G +IV+ +
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALL--- 93
Query: 210 PSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGG 269
K +N+ + TPLH AA +R ++ L++ GA+ + D + + AA++G
Sbjct: 94 --VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGN 151
Query: 270 WKTNGV------NTRILNNKKQAVLHLATELNKV 297
K + +T I + + LHLA + +V
Sbjct: 152 LKMVHILLFYKASTNIQDTEGNTPLHLACDEERV 185
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 528 DINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYG 587
D + R LH G I EF L+ LG +N K+++ SPLH+AA G
Sbjct: 37 DQDSRTALHWACSAGHTEIVEF------------LLQLGVPVNDKDDAGWSPLHIAASAG 84
Query: 588 RYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFH 625
R VK LL +G+ + N + G TPLH A+ + H
Sbjct: 85 RDEIVKALLV--KGAHV-NAVNQNGCTPLHYAASKNRH 119
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 77/186 (41%), Gaps = 10/186 (5%)
Query: 220 TDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG------GWKTN 273
TD T LH A ++V++L+ G +N D SPL +AAS G
Sbjct: 36 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVK 95
Query: 274 GVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDE 333
G + +N LH A N+ I ++LL+ D + TA+H AA +
Sbjct: 96 GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD--HYDATAMHRAAAKGNLK 153
Query: 334 CARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGC-SREEMISLFAA 392
IL+ + AS + G P+H A + + + G SI ++EE L A
Sbjct: 154 MVHILLF-YKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212
Query: 393 EGNLPL 398
+G L L
Sbjct: 213 KGGLGL 218
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 83/215 (38%), Gaps = 43/215 (20%)
Query: 13 KSRLIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALH 72
K R++ S + TR + + A LH A I+ LLQ + + + G + LH
Sbjct: 23 KERILADKS-LATRTDQDSRTA-LHWACSAGHTEIVEFLLQLG--VPVNDKDDAGWSPLH 78
Query: 73 IAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFL 132
IAA DE + L +VK GA + NG P+H AA + + L
Sbjct: 79 IAASAGRDEIVKAL----------LVK--GAHVNAVNQNGCTPLHYAASKNRHEIAVMLL 126
Query: 133 QFGE-----------------SIGCSREEMISLF--------DAEGNLPLHSAVHGGDFK 167
+ G + G + I LF D EGN PLH A +
Sbjct: 127 EGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVE 186
Query: 168 AVELCLKSGAKISTQQFDLSTPVHLACSQGALDIV 202
+ + GA I + + TP+ +A +G L ++
Sbjct: 187 EAKFLVTQGASIYIENKEEKTPLQVA--KGGLGLI 219
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 5/142 (3%)
Query: 401 AVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNS 460
A G V + + +GA ++ TP+HLA G L+IV ++ +++
Sbjct: 21 AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGAD-----VDA 75
Query: 461 TDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRN 520
D TPLH AAM ++V+ L+ GAD+N D +PL LAA G + V L++
Sbjct: 76 ADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKY 135
Query: 521 KANILLKDINRRNILHLLVLNG 542
A++ +D + + + NG
Sbjct: 136 GADVNAQDKFGKTAFDISIDNG 157
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 59/123 (47%), Gaps = 5/123 (4%)
Query: 146 ISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLM 205
++ D G PLH A G + VE+ LK GA + TP+HLA G L+IV ++
Sbjct: 40 VNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVL 99
Query: 206 FNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAA 265
+N+ D TPLH AA ++V+ L+ GAD+N DK ++ ++
Sbjct: 100 LKYGAD-----VNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISI 154
Query: 266 SRG 268
G
Sbjct: 155 DNG 157
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 5/109 (4%)
Query: 160 AVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNS 219
A G V + + +GA ++ TP+HLA G L+IV ++ +++
Sbjct: 21 AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGAD-----VDA 75
Query: 220 TDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
D TPLH AAM ++V+ L+ GAD+N D +PL LAA G
Sbjct: 76 ADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEG 124
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 9/116 (7%)
Query: 332 DECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFA 391
D+ RIL+ + GA + + G P+H AA + + +EV L+ G + +
Sbjct: 27 DDEVRILIAN-GADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAAD-------- 77
Query: 392 AEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMF 447
G PLH A G + VE+ LK GA ++ STP+HLA +G L+IV ++
Sbjct: 78 VYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLL 133
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 8/105 (7%)
Query: 102 GASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAV 161
GA + + G P+H AA + + +EV L+ G + + D G PLH A
Sbjct: 37 GADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAA--------DVYGFTPLHLAA 88
Query: 162 HGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMF 206
G + VE+ LK GA ++ STP+HLA +G L+IV ++
Sbjct: 89 MTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLL 133
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 72/152 (47%), Gaps = 15/152 (9%)
Query: 472 AAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINR 531
AA + D V+ LI GAD+N +D +PL LAA G + V L+++ A++ D+
Sbjct: 21 AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYG 80
Query: 532 RNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNT 591
LHL + GH++ + E L+ GA +N + + +PLHLAA G
Sbjct: 81 FTPLHLAAMT--GHLE----------IVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEI 128
Query: 592 VKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
V+ LL + +N D G T I+ G
Sbjct: 129 VEVLL---KYGADVNAQDKFGKTAFDISIDNG 157
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 20/137 (14%)
Query: 67 GRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSK 126
G T LH+AA+ E +L+ GA + A G+ P+H AA +
Sbjct: 47 GLTPLHLAAVSGHLEIVEVLLKH------------GADVDAADVYGFTPLHLAAMTGHLE 94
Query: 127 TMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDL 186
+EV L++G + FD G+ PLH A G + VE+ LK GA ++ Q
Sbjct: 95 IVEVLLKYGADVNA--------FDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFG 146
Query: 187 STPVHLACSQGALDIVR 203
T ++ G D+ +
Sbjct: 147 KTAFDISIDNGNEDLAK 163
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 12/136 (8%)
Query: 458 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTL 517
+N+ D +TPLH AA+ ++V+ L+ GAD++ D +PL LAA G + V L
Sbjct: 40 VNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVL 99
Query: 518 VRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNE 577
++ A++ D+ LHL GH++ + E L+ GA +N ++ +
Sbjct: 100 LKYGADVNAFDMTGSTPLHLAADE--GHLE----------IVEVLLKYGADVNAQDKFGK 147
Query: 578 SPLHLAARYGRYNTVK 593
+ ++ G + K
Sbjct: 148 TAFDISIDNGNEDLAK 163
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 10/125 (8%)
Query: 262 LLAASRGGWK-------TNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQ 314
LL A+R G NG + ++N LHLA + I+ +LL++ D+
Sbjct: 18 LLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHG--ADVDA 75
Query: 315 GGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQ 374
+G T LH+AA+ E +L+K +GA + G P+H AA + +EV L+
Sbjct: 76 ADVYGFTPLHLAAMTGHLEIVEVLLK-YGADVNAFDMTGSTPLHLAADEGHLEIVEVLLK 134
Query: 375 FGESI 379
+G +
Sbjct: 135 YGADV 139
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 57/131 (43%), Gaps = 14/131 (10%)
Query: 20 SSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDF 79
++G + ++N LHLA + I+ +LL++ D+ +G T LH+AA+
Sbjct: 35 ANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHG--ADVDAADVYGFTPLHLAAMTGH 92
Query: 80 DECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIG 139
E +L+ +GA + G P+H AA + +EV L++G +
Sbjct: 93 LEIVEVLLK------------YGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVN 140
Query: 140 CSREEMISLFD 150
+ + FD
Sbjct: 141 AQDKFGKTAFD 151
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 99/240 (41%), Gaps = 30/240 (12%)
Query: 380 GCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGA 439
GC MI A G L + K L KS A + Q D T +H ACS G
Sbjct: 3 GCVSNIMICNLAYSGKLD--------ELKERILADKSLATRTDQ--DSRTALHWACSAGH 52
Query: 440 LDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKR 499
+IV + L V +N D +PLH AA ++V+ L+ +GA +N +++
Sbjct: 53 TEIVEFLLQLG-----VPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGC 107
Query: 500 SPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLG 559
+PL AAS+ + + L+ AN KD +H G +
Sbjct: 108 TPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHI---------- 157
Query: 560 ENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIA 619
L+ A N+++ +PLHLA R K L++ +I N+ E TPL +A
Sbjct: 158 --LLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENK---EEKTPLQVA 212
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 97/206 (47%), Gaps = 18/206 (8%)
Query: 398 LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC 457
LH A G + VE L+ G ++ + +P+H+A S G +IV+ + K
Sbjct: 44 LHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALL-----VKGAH 98
Query: 458 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTL 517
+N+ + TPLH AA +R ++ L++ GA+ + D + + AA++G K V L
Sbjct: 99 VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHIL 158
Query: 518 VRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNE 577
+ KA+ ++D LHL +E EE A F L+ GA I ++N +
Sbjct: 159 LFYKASTNIQDTEGNTPLHLAC------DEERVEE--AKF----LVTQGASIYIENKEEK 206
Query: 578 SPLHLAARYGRYNTVKKLLSSERGSF 603
+PL + A+ G +K+L E S
Sbjct: 207 TPLQV-AKGGLGLILKRLAEGEEASM 231
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 85/202 (42%), Gaps = 27/202 (13%)
Query: 68 RTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKT 127
RTALH A E L+ G + G+ P+H AA +
Sbjct: 41 RTALHWACSAGHTEIVEFLLQ------------LGVPVNDKDDAGWSPLHIAASAGXDEI 88
Query: 128 MEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLS 187
++ L G + + G PLH A + + L+ GA + +
Sbjct: 89 VKALLVKGAHVNA--------VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDA 140
Query: 188 TPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEG 247
T +H A ++G L +V ++ + S N D + TPLH A +R + ++L+ +G
Sbjct: 141 TAMHRAAAKGNLKMVHILLFYKAS-----TNIQDTEGNTPLHLACDEERVEEAKFLVTQG 195
Query: 248 ADLNVLDKEKRSPLLLAASRGG 269
A + + +KE+++PL +A +GG
Sbjct: 196 ASIYIENKEEKTPLQVA--KGG 215
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 72/154 (46%), Gaps = 11/154 (7%)
Query: 150 DAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQ 209
D + LH A G + VE L+ G ++ + +P+H+A S G +IV+ +
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALL--- 93
Query: 210 PSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGG 269
K +N+ + TPLH AA +R ++ L++ GA+ + D + + AA++G
Sbjct: 94 --VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGN 151
Query: 270 WKTNGV------NTRILNNKKQAVLHLATELNKV 297
K + +T I + + LHLA + +V
Sbjct: 152 LKMVHILLFYKASTNIQDTEGNTPLHLACDEERV 185
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 83/204 (40%), Gaps = 49/204 (24%)
Query: 340 KDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLH 399
+D +L ACS G+ I +E LQ G + + G PLH
Sbjct: 38 QDSRTALHWACSAGHTEI-----------VEFLLQLGVPVNDKDDA--------GWSPLH 78
Query: 400 SAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMF------------ 447
A G + V+ L GA ++ + TP+H A S+ +I ++
Sbjct: 79 IAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHY 138
Query: 448 ------------NLQPSEKLV----CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADL 491
NL+ L+ N D + TPLH A +R + ++L+ +GA +
Sbjct: 139 DATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASI 198
Query: 492 NVLDKEKRSPLLLAASRGGWKTVL 515
+ +KE+++PL +A +GG +L
Sbjct: 199 YIENKEEKTPLQVA--KGGLGLIL 220
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 72/162 (44%), Gaps = 15/162 (9%)
Query: 461 TDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRN 520
TD T LH A ++V++L+ G +N D SPL +AAS G + V L+
Sbjct: 36 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVK 95
Query: 521 KANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPL 580
A++ + N LH + E+A + L+ GA + K++ + + +
Sbjct: 96 GAHVNAVNQNGCTPLHYAA-------SKNRHEIAVM-----LLEGGANPDAKDHYDATAM 143
Query: 581 HLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKE 622
H AA G V LL + + I D EG TPLH+A E
Sbjct: 144 HRAAAKGNLKMVHILLFYKASTNI---QDTEGNTPLHLACDE 182
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 78/186 (41%), Gaps = 10/186 (5%)
Query: 220 TDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWK------TN 273
TD T LH A ++V++L+ G +N D SPL +AAS G +
Sbjct: 36 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVK 95
Query: 274 GVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDE 333
G + +N LH A N+ I ++LL+ D + TA+H AA +
Sbjct: 96 GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD--HYDATAMHRAAAKGNLK 153
Query: 334 CARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGC-SREEMISLFAA 392
IL+ + AS + G P+H A + + + G SI ++EE L A
Sbjct: 154 MVHILLF-YKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212
Query: 393 EGNLPL 398
+G L L
Sbjct: 213 KGGLGL 218
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 46/98 (46%), Gaps = 15/98 (15%)
Query: 528 DINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYG 587
D + R LH G I EF L+ LG +N K+++ SPLH+AA G
Sbjct: 37 DQDSRTALHWACSAGHTEIVEF------------LLQLGVPVNDKDDAGWSPLHIAASAG 84
Query: 588 RYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFH 625
VK LL +G+ + N + G TPLH A+ + H
Sbjct: 85 XDEIVKALLV--KGAHV-NAVNQNGCTPLHYAASKNRH 119
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 83/215 (38%), Gaps = 43/215 (20%)
Query: 13 KSRLIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALH 72
K R++ S + TR + + A LH A I+ LLQ + + + G + LH
Sbjct: 23 KERILADKS-LATRTDQDSRTA-LHWACSAGHTEIVEFLLQLG--VPVNDKDDAGWSPLH 78
Query: 73 IAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFL 132
IAA DE + L +VK GA + NG P+H AA + + L
Sbjct: 79 IAASAGXDEIVKAL----------LVK--GAHVNAVNQNGCTPLHYAASKNRHEIAVMLL 126
Query: 133 QFGE-----------------SIGCSREEMISLF--------DAEGNLPLHSAVHGGDFK 167
+ G + G + I LF D EGN PLH A +
Sbjct: 127 EGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVE 186
Query: 168 AVELCLKSGAKISTQQFDLSTPVHLACSQGALDIV 202
+ + GA I + + TP+ +A +G L ++
Sbjct: 187 EAKFLVTQGASIYIENKEEKTPLQVA--KGGLGLI 219
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 63.5 bits (153), Expect = 3e-10, Method: Composition-based stats.
Identities = 44/156 (28%), Positives = 75/156 (48%), Gaps = 5/156 (3%)
Query: 398 LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC 457
L A G V + + +GA ++ + TP+HLA G L+IV ++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGAD----- 72
Query: 458 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTL 517
+N+ D TPLH AA ++V+ L+ GAD+N D E +PL LAA G + V L
Sbjct: 73 VNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVL 132
Query: 518 VRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEV 553
++ A++ +D + + + NG + E +++
Sbjct: 133 LKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 8/95 (8%)
Query: 112 GYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVEL 171
G+ P+H AAK + +EV L++G + +D G PLH A G + VE+
Sbjct: 47 GHTPLHLAAKTGHLEIVEVLLKYGADVNA--------WDNYGATPLHLAADNGHLEIVEV 98
Query: 172 CLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMF 206
LK GA ++ + ++ TP+HLA G L+IV ++
Sbjct: 99 LLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLL 133
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 10/133 (7%)
Query: 315 GGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQ 374
G + G+ L A DE RIL+ + GA + G+ P+H AAK + +EV L+
Sbjct: 11 GSDLGKKLLEAARAGQDDE-VRILMAN-GADVNATDWLGHTPLHLAAKTGHLEIVEVLLK 68
Query: 375 FGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLA 434
+G + + G PLH A G + VE+ LK GA ++ + ++ TP+HLA
Sbjct: 69 YGADVNA--------WDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLA 120
Query: 435 CSQGALDIVRLMF 447
G L+IV ++
Sbjct: 121 AYDGHLEIVEVLL 133
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 40/130 (30%), Positives = 63/130 (48%), Gaps = 8/130 (6%)
Query: 217 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWK----- 271
+N+TD TPLH AA ++V+ L+ GAD+N D +PL LAA G +
Sbjct: 40 VNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVL 99
Query: 272 -TNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYD 330
+G + + + LHLA + I+ +LL+Y D+ + G+TA I+
Sbjct: 100 LKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYG--ADVNAQDKFGKTAFDISIDNG 157
Query: 331 FDECARILVK 340
++ A IL K
Sbjct: 158 NEDLAEILQK 167
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 50/161 (31%), Positives = 68/161 (42%), Gaps = 15/161 (9%)
Query: 472 AAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINR 531
AA + D V+ L+ GAD+N D +PL LAA G + V L++ A++ D
Sbjct: 21 AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYG 80
Query: 532 RNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNT 591
LHL NG I E L+ GA +N K+ +PLHLAA G
Sbjct: 81 ATPLHLAADNGHLEIVEV------------LLKHGADVNAKDYEGFTPLHLAAYDGHLEI 128
Query: 592 VKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQ 632
V+ LL + +N D G T I+ G I Q
Sbjct: 129 VEVLL---KYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/122 (33%), Positives = 54/122 (44%), Gaps = 15/122 (12%)
Query: 502 LLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEN 561
LL AA G V L+ N A++ D LHL G I E
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEV------------ 65
Query: 562 LINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASK 621
L+ GA +N +N +PLHLAA G V+ LL + +N D EG TPLH+A+
Sbjct: 66 LLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLL---KHGADVNAKDYEGFTPLHLAAY 122
Query: 622 EG 623
+G
Sbjct: 123 DG 124
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 40/149 (26%), Positives = 64/149 (42%), Gaps = 30/149 (20%)
Query: 231 AAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHL 290
AA + D V+ L+ GAD+N D +P LHL
Sbjct: 21 AARAGQDDEVRILMANGADVNATDWLGHTP---------------------------LHL 53
Query: 291 ATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRAC 350
A + + I+ +LL+Y D+ +G T LH+AA E +L+K GA +
Sbjct: 54 AAKTGHLEIVEVLLKYG--ADVNAWDNYGATPLHLAADNGHLEIVEVLLKH-GADVNAKD 110
Query: 351 SNGYYPIHDAAKNASSKTMEVFLQFGESI 379
G+ P+H AA + + +EV L++G +
Sbjct: 111 YEGFTPLHLAAYDGHLEIVEVLLKYGADV 139
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 14/115 (12%)
Query: 36 LHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDW 95
LHLA + + I+ +LL+Y D+ +G T LH+AA E +L+
Sbjct: 51 LHLAAKTGHLEIVEVLLKYG--ADVNAWDNYGATPLHLAADNGHLEIVEVLLKH------ 102
Query: 96 IMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFD 150
GA + G+ P+H AA + + +EV L++G + + + FD
Sbjct: 103 ------GADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFD 151
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 77/153 (50%), Gaps = 5/153 (3%)
Query: 401 AVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNS 460
A G V + + +GA ++ TP+HLA G L+IV ++ + +N+
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLL-----KNGADVNA 75
Query: 461 TDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRN 520
D+ +TPLH AA +VV+ L+ GAD+N D +PL LAA+ G + V L+++
Sbjct: 76 DDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKH 135
Query: 521 KANILLKDINRRNILHLLVLNGGGHIKEFAEEV 553
A++ +D + + + NG + E +++
Sbjct: 136 GADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 76/162 (46%), Gaps = 13/162 (8%)
Query: 185 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 244
DL + A G D VR++ +N++D TPLH AA F ++V+ L+
Sbjct: 13 DLGKKLLEAARAGQDDEVRILM-----ANGADVNASDHVGWTPLHLAAYFGHLEIVEVLL 67
Query: 245 DEGADLNVLDKEKRSPLLLAASRGGWKT------NGVNTRILNNKKQAVLHLATELNKVP 298
GAD+N D +PL LAA RG + NG + ++ LHLA + +
Sbjct: 68 KNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLE 127
Query: 299 ILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVK 340
I+ +LL++ D+ + G+TA I+ ++ A IL K
Sbjct: 128 IVEVLLKHG--ADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 56/112 (50%), Gaps = 5/112 (4%)
Query: 426 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 485
DL + A G D VR++ +N++D TPLH AA F ++V+ L+
Sbjct: 13 DLGKKLLEAARAGQDDEVRILM-----ANGADVNASDHVGWTPLHLAAYFGHLEIVEVLL 67
Query: 486 DEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHL 537
GAD+N D +PL LAA RG + V L++N A++ D N LHL
Sbjct: 68 KNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHL 119
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 59/116 (50%), Gaps = 9/116 (7%)
Query: 332 DECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFA 391
D+ RIL+ + GA + + G+ P+H AA + +EV L+ G + ++
Sbjct: 27 DDEVRILMAN-GADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVT--- 82
Query: 392 AEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMF 447
PLH A G + VE+ LK+GA ++ + TP+HLA + G L+IV ++
Sbjct: 83 -----PLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLL 133
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 12/126 (9%)
Query: 81 ECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGC 140
E AR + E +M GA + + G+ P+H AA + +EV L+ G +
Sbjct: 20 EAAR--AGQDDEVRILMAN--GADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNA 75
Query: 141 SREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALD 200
D+ G PLH A G + VE+ LK+GA ++ + TP+HLA + G L+
Sbjct: 76 D--------DSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLE 127
Query: 201 IVRLMF 206
IV ++
Sbjct: 128 IVEVLL 133
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 10/127 (7%)
Query: 262 LLAASRGGWK-------TNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQ 314
LL A+R G NG + ++ LHLA + I+ +LL K+ D+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLL--KNGADVNA 75
Query: 315 GGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQ 374
G T LH+AA E +L+K+ GA + NG+ P+H AA + +EV L+
Sbjct: 76 DDSLGVTPLHLAADRGHLEVVEVLLKN-GADVNANDHNGFTPLHLAANIGHLEIVEVLLK 134
Query: 375 FGESIGC 381
G +
Sbjct: 135 HGADVNA 141
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 14/115 (12%)
Query: 36 LHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDW 95
LHLA + I+ +LL K+ D+ G T LH+AA E +L+
Sbjct: 51 LHLAAYFGHLEIVEVLL--KNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKN------ 102
Query: 96 IMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFD 150
GA + NG+ P+H AA + +EV L+ G + + + FD
Sbjct: 103 ------GADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFD 151
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 73/265 (27%), Positives = 110/265 (41%), Gaps = 44/265 (16%)
Query: 185 DLSTPVHLACSQGALDIVRLMFNL--QPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQY 242
D TP+H+A QG L V + NL Q +L N+ + TPLH A + VV+
Sbjct: 8 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNL---RQTPLHLAVITTLPSVVRL 64
Query: 243 LIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLI 302
L+ GA LD+ Q HLA E L
Sbjct: 65 LVTAGASPMALDRHG---------------------------QTAAHLACEHRSPTCLRA 97
Query: 303 LLQY--KDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRA-CSNGYYPIHD 359
LL +D+ G TALH+A + E ++L+ + GA + +G P+
Sbjct: 98 LLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLL-ERGADIDAVDIKSGRSPLIH 156
Query: 360 AAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAK 419
A +N S +++ LQ G ++ +M S G+ LHSA G V ++SGA
Sbjct: 157 AVENNSLSMVQLLLQHGANVNA---QMYS-----GSSALHSASGRGLLPLVRTLVRSGAD 208
Query: 420 ISTQQFDLSTPVHLACSQGALDIVR 444
S + TP+ +A S+ +DI+R
Sbjct: 209 SSLKNCHNDTPLMVARSRRVIDILR 233
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 69/285 (24%), Positives = 112/285 (39%), Gaps = 70/285 (24%)
Query: 254 DKEKRSPLLLAASRGG----------WKTNGVNTRILNNKKQAVLHLA--TELNKVPILL 301
D++ +PL +A +G ++ G I NN +Q LHLA T L V LL
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65
Query: 302 ILLQYKDM-IDILQGGEHGRTALHIAAIYDFDECARILVKDFGAS---LKRACSNGYYPI 357
+ M +D HG+TA H+A + C R L+ L+ +G +
Sbjct: 66 VTAGASPMALD-----RHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTAL 120
Query: 358 HDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSG 417
H A +T+++ L+ G I ++ G PL AV V+L L+ G
Sbjct: 121 HVAVNTECQETVQLLLERGADID-------AVDIKSGRSPLIHAVENNSLSMVQLLLQHG 173
Query: 418 AKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDR 477
A ++ Q + S+ +H A +G L +VR
Sbjct: 174 ANVNAQMYSGSSALHSASGRGLLPLVR--------------------------------- 200
Query: 478 CDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKA 522
L+ GAD ++ + +PL++A SR V+ ++R KA
Sbjct: 201 -----TLVRSGADSSLKNCHNDTPLMVARSR----RVIDILRGKA 236
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 103/241 (42%), Gaps = 26/241 (10%)
Query: 348 RACSNGYYPIHDAAKN----ASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVH 403
RA +G P+H A A + + +F Q G RE + ++ PLH AV
Sbjct: 4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGG------RE--LDIYNNLRQTPLHLAVI 55
Query: 404 GGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDA 463
V L + +GA T HLAC + +R + + + + L + +
Sbjct: 56 TTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLD-SAAPGTLDLEARNY 114
Query: 464 QKMTPLHCAAMFDRCDVVQYLIDEGADLNVLD-KEKRSPLLLAASRGGWKTVLTLVRNKA 522
+T LH A + + VQ L++ GAD++ +D K RSPL+ A V L+++ A
Sbjct: 115 DGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGA 174
Query: 523 NILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHL 582
N+ + + + LH A + L L+ GA +LKN N++PL +
Sbjct: 175 NVNAQMYSGSSALH------------SASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMV 222
Query: 583 A 583
A
Sbjct: 223 A 223
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 21/186 (11%)
Query: 20 SSGVNTRILNNKKQAVLHLATELNKVPILLILLQY--KDMIDILQGGEHGRTALHIAAIY 77
++G + L+ Q HLA E L LL +D+ G TALH+A
Sbjct: 67 TAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNT 126
Query: 78 DFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGES 137
+ E ++L+ + D + +K +G P+ A +N S +++ LQ G +
Sbjct: 127 ECQETVQLLLERGADIDAVDIK-----------SGRSPLIHAVENNSLSMVQLLLQHGAN 175
Query: 138 IGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQG 197
+ +M S G+ LHSA G V ++SGA S + TP+ +A S+
Sbjct: 176 VNA---QMYS-----GSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRR 227
Query: 198 ALDIVR 203
+DI+R
Sbjct: 228 VIDILR 233
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 88/210 (41%), Gaps = 20/210 (9%)
Query: 107 RACSNGYYPIHDAAKN----ASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVH 162
RA +G P+H A A + + +F Q G RE + +++ PLH AV
Sbjct: 4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGG------RE--LDIYNNLRQTPLHLAVI 55
Query: 163 GGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDA 222
V L + +GA T HLAC + +R + + + + L + +
Sbjct: 56 TTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLD-SAAPGTLDLEARNY 114
Query: 223 QKMTPLHCAAMFDRCDVVQYLIDEGADLNVLD-KEKRSPLLLAASRGGWK------TNGV 275
+T LH A + + VQ L++ GAD++ +D K RSPL+ A +G
Sbjct: 115 DGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGA 174
Query: 276 NTRILNNKKQAVLHLATELNKVPILLILLQ 305
N + LH A+ +P++ L++
Sbjct: 175 NVNAQMYSGSSALHSASGRGLLPLVRTLVR 204
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 83/210 (39%), Gaps = 44/210 (20%)
Query: 320 RTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESI 379
+T LH+A I R+LV GAS +G H A ++ S + L
Sbjct: 47 QTPLHLAVITTLPSVVRLLVT-AGASPMALDRHGQTAAHLACEHRSPTCLRALLDS---- 101
Query: 380 GCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGA 439
AA G L D +A + +D T +H+A +
Sbjct: 102 -----------AAPGTL---------DLEA-------------RNYDGLTALHVAVNTEC 128
Query: 440 LDIVRLMFNLQPSEKLVCLNSTDAQK-MTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEK 498
+ V+L+ E+ +++ D + +PL A + +VQ L+ GA++N
Sbjct: 129 QETVQLLL-----ERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSG 183
Query: 499 RSPLLLAASRGGWKTVLTLVRNKANILLKD 528
S L A+ RG V TLVR+ A+ LK+
Sbjct: 184 SSALHSASGRGLLPLVRTLVRSGADSSLKN 213
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 73/291 (25%), Positives = 128/291 (43%), Gaps = 41/291 (14%)
Query: 344 ASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVH 403
+S +RA + + A +N ++ L+ G ++ EE G PLH+AV
Sbjct: 16 SSGRRAAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEG-------GWTPLHNAVQ 68
Query: 404 GGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDA 463
VEL L+ GA ++ + +TP LA G++ +++L + K +N D
Sbjct: 69 MSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLS-----KGADVNECDF 123
Query: 464 QKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKAN 523
T AA++ + +++L GA++N+ K K L R G T L K +
Sbjct: 124 YGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERL---RKGGATALMDAAEKGH 180
Query: 524 I-LLK--------DIN------RRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGAC 568
+ +LK D+N R ++H L+ + ++ A L L++ GA
Sbjct: 181 VEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVE------AITHL---LLDHGAD 231
Query: 569 INLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIA 619
+N++ ++PL LA V++LL E IN++D +G T L +A
Sbjct: 232 VNVRGERGKTPLILAVEKKHLGLVQRLLEQEH--IEINDTDSDGKTALLLA 280
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 104/259 (40%), Gaps = 35/259 (13%)
Query: 103 ASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVH 162
+S +RA + + A +N ++ L+ G ++ EE G PLH+AV
Sbjct: 16 SSGRRAAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEG-------GWTPLHNAVQ 68
Query: 163 GGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDA 222
VEL L+ GA ++ + +TP LA G++ +++L + K +N D
Sbjct: 69 MSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLS-----KGADVNECDF 123
Query: 223 QKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNN 282
T AA++ + +++L GA++N+ K K L R G T
Sbjct: 124 YGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERL---RKGGAT---------- 170
Query: 283 KKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFD----ECARIL 338
L A E V +L ILL D+ GR AL I A+ D E L
Sbjct: 171 ----ALMDAAEKGHVEVLKILLDEMGA-DVNACDNMGRNAL-IHALLSSDDSDVEAITHL 224
Query: 339 VKDFGASLKRACSNGYYPI 357
+ D GA + G P+
Sbjct: 225 LLDHGADVNVRGERGKTPL 243
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 37/94 (39%), Positives = 52/94 (55%), Gaps = 5/94 (5%)
Query: 429 TPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEG 488
TP+HLA G L++V+L+ E +N+ D TPLH AA +VV+ L++ G
Sbjct: 4 TPLHLAARNGHLEVVKLLL-----EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 489 ADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKA 522
AD+N DK R+PL LAA G + V L+ A
Sbjct: 59 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 34/81 (41%), Positives = 47/81 (58%), Gaps = 5/81 (6%)
Query: 188 TPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEG 247
TP+HLA G L++V+L+ E +N+ D TPLH AA +VV+ L++ G
Sbjct: 4 TPLHLAARNGHLEVVKLLL-----EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 248 ADLNVLDKEKRSPLLLAASRG 268
AD+N DK R+PL LAA G
Sbjct: 59 ADVNAKDKNGRTPLHLAARNG 79
Score = 59.3 bits (142), Expect = 6e-09, Method: Composition-based stats.
Identities = 34/96 (35%), Positives = 53/96 (55%), Gaps = 5/96 (5%)
Query: 153 GNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSE 212
G PLH A G + V+L L++GA ++ + + TP+HLA G L++V+L+ E
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL-----E 56
Query: 213 KLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGA 248
+N+ D TPLH AA +VV+ L++ GA
Sbjct: 57 AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 59.3 bits (142), Expect = 6e-09, Method: Composition-based stats.
Identities = 34/96 (35%), Positives = 53/96 (55%), Gaps = 5/96 (5%)
Query: 394 GNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSE 453
G PLH A G + V+L L++GA ++ + + TP+HLA G L++V+L+ E
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL-----E 56
Query: 454 KLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGA 489
+N+ D TPLH AA +VV+ L++ GA
Sbjct: 57 AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 36/89 (40%), Positives = 48/89 (53%)
Query: 467 TPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILL 526
TPLH AA +VV+ L++ GAD+N DK R+PL LAA G + V L+ A++
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 527 KDINRRNILHLLVLNGGGHIKEFAEEVAA 555
KD N R LHL NG + + E A
Sbjct: 64 KDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 8/96 (8%)
Query: 111 NGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVE 170
NG P+H AA+N + +++ L+ G + D G PLH A G + V+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAK--------DKNGRTPLHLAARNGHLEVVK 52
Query: 171 LCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMF 206
L L++GA ++ + + TP+HLA G L++V+L+
Sbjct: 53 LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 88
Score = 52.4 bits (124), Expect = 8e-07, Method: Composition-based stats.
Identities = 39/100 (39%), Positives = 52/100 (52%), Gaps = 12/100 (12%)
Query: 499 RSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFL 558
R+PL LAA G + V L+ A++ KD N R LHL NG H+ EV +
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG--HL-----EVVKL-- 53
Query: 559 GENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSS 598
L+ GA +N K+ + +PLHLAAR G VK LL +
Sbjct: 54 ---LLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 38/94 (40%), Positives = 50/94 (53%), Gaps = 15/94 (15%)
Query: 530 NRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRY 589
N R LHL NG H+ EV + L+ GA +N K+ + +PLHLAAR G
Sbjct: 1 NGRTPLHLAARNG--HL-----EVVKL-----LLEAGADVNAKDKNGRTPLHLAARNGHL 48
Query: 590 NTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
VK LL E G+ +N D G TPLH+A++ G
Sbjct: 49 EVVKLLL--EAGA-DVNAKDKNGRTPLHLAARNG 79
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 9/101 (8%)
Query: 318 HGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGE 377
+GRT LH+AA E ++L+ + GA + NG P+H AA+N + +++ L+ G
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLL-EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 378 SIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGA 418
+ + G PLH A G + V+L L++GA
Sbjct: 60 DVNAKDK--------NGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 20/112 (17%)
Query: 66 HGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASS 125
+GRT LH+AA E ++L+ + GA + NG P+H AA+N
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLL------------EAGADVNAKDKNGRTPLHLAARNGHL 48
Query: 126 KTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGA 177
+ +++ L+ G + D G PLH A G + V+L L++GA
Sbjct: 49 EVVKLLLEAGADVNAK--------DKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 288 LHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLK 347
LHLA + ++ +LL+ D+ ++GRT LH+AA E ++L+ + GA +
Sbjct: 6 LHLAARNGHLEVVKLLLEAG--ADVNAKDKNGRTPLHLAARNGHLEVVKLLL-EAGADVN 62
Query: 348 RACSNGYYPIHDAAKNASSKTMEVFLQFG 376
NG P+H AA+N + +++ L+ G
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLLEAG 91
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 14/100 (14%)
Query: 36 LHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDW 95
LHLA + ++ +LL+ D+ ++GRT LH+AA E ++L+
Sbjct: 6 LHLAARNGHLEVVKLLLEAG--ADVNAKDKNGRTPLHLAARNGHLEVVKLLL-------- 55
Query: 96 IMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFG 135
+ GA + NG P+H AA+N + +++ L+ G
Sbjct: 56 ----EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 101/219 (46%), Gaps = 14/219 (6%)
Query: 159 SAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLN 218
+A GD + V L+ GA I+ D T +H AC +D+V+ + E +N
Sbjct: 46 AACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLV-----ENGANIN 100
Query: 219 STDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTR 278
D + PLH AA D+ +YLI +GA + ++ E +PL +A + +
Sbjct: 101 QPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEE----EAMEELLQ 156
Query: 279 ILNNKKQAVLHLATELNKVPILLILLQY--KDMIDILQGGEHGRTALHIAAIYDFDECAR 336
N++ + A + + +L Q+ I+ ++ + G TALH+AA + E +
Sbjct: 157 NEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLK 216
Query: 337 ILVK-DFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQ 374
+L++ + ++K +G+ P+H AA + + ++
Sbjct: 217 LLIQARYDVNIKD--YDGWTPLHAAAHWGKEEACRILVE 253
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 93/215 (43%), Gaps = 22/215 (10%)
Query: 400 SAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLN 459
+A GD + V L+ GA I+ D T +H AC +D+V+ + E +N
Sbjct: 46 AACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLV-----ENGANIN 100
Query: 460 STDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLA------------AS 507
D + PLH AA D+ +YLI +GA + ++ E +PL +A +
Sbjct: 101 QPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVN 160
Query: 508 RGGWKTVLTLVRNKANILLKD----INRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLI 563
R G + + + I+L+D +N +I + GG A + + LI
Sbjct: 161 RQG-VDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLI 219
Query: 564 NLGACINLKNNSNESPLHLAARYGRYNTVKKLLSS 598
+N+K+ +PLH AA +G+ + L+ +
Sbjct: 220 QARYDVNIKDYDGWTPLHAAAHWGKEEACRILVEN 254
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 97/223 (43%), Gaps = 25/223 (11%)
Query: 425 FDLSTPVHLACSQGALD-IVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQY 483
FD ACS G + ++RL+ E+ +N + +T LH A + D D+V++
Sbjct: 38 FDDGAVFLAACSSGDTEEVLRLL------ERGADINYANVDGLTALHQACIDDNVDMVKF 91
Query: 484 LIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLL----- 538
L++ GA++N D E PL AAS G L+ A++ + L +
Sbjct: 92 LVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAM 151
Query: 539 -------VLNGGGHIKEFAEEVAAVFL--GENLINLGACINLKN-NSNESPLHLAARYGR 588
V G I+ +E + L +N G ++++ S + LH+AA G
Sbjct: 152 EELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKG- 210
Query: 589 YNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIF 631
Y V KLL R + +N D +G TPLH A+ G + I
Sbjct: 211 YTEVLKLLIQAR--YDVNIKDYDGWTPLHAAAHWGKEEACRIL 251
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 86/206 (41%), Gaps = 43/206 (20%)
Query: 319 GRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGES 378
G TALH A I D + + LV++ GA++ + + G+ P+H AA E + G
Sbjct: 73 GLTALHQACIDDNVDMVKFLVEN-GANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAH 131
Query: 379 IGCSREEMISLFAAEGNLPLHSAV--------------HGGDFKAVE------------L 412
+G +EG+ PL A G D +A
Sbjct: 132 VGA--------VNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQ 183
Query: 413 CLKSGAKISTQQFDLS--TPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLH 470
L SG I+ + S T +H+A ++G ++++L+ + +N D TPLH
Sbjct: 184 WLNSG-HINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD-----VNIKDYDGWTPLH 237
Query: 471 CAAMFDRCDVVQYLIDEGADLNVLDK 496
AA + + + + L++ D+ ++K
Sbjct: 238 AAAHWGKEEACRILVENLCDMEAVNK 263
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 87/213 (40%), Gaps = 32/213 (15%)
Query: 330 DFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISL 389
D +E R+L + GA + A +G +H A + + ++ ++ G +I E
Sbjct: 52 DTEEVLRLLER--GADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNE---- 105
Query: 390 FAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNL 449
G +PLH+A G E + GA + + TP+ +A + ++++ N
Sbjct: 106 ----GWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNR 161
Query: 450 Q---------PSEKLV------CLNSTDAQKM-------TPLHCAAMFDRCDVVQYLIDE 487
Q E+++ LNS + T LH AA +V++ LI
Sbjct: 162 QGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQA 221
Query: 488 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRN 520
D+N+ D + +PL AA G + LV N
Sbjct: 222 RYDVNIKDYDGWTPLHAAAHWGKEEACRILVEN 254
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 77/189 (40%), Gaps = 30/189 (15%)
Query: 102 GASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAV 161
GA + A +G +H A + + ++ ++ G +I D EG +PLH+A
Sbjct: 63 GADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQP--------DNEGWIPLHAAA 114
Query: 162 HGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQ---------PSE 212
G E + GA + + TP+ +A + ++++ N Q E
Sbjct: 115 SCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEE 174
Query: 213 KLV------CLNSTDAQKM-------TPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRS 259
+++ LNS + T LH AA +V++ LI D+N+ D + +
Sbjct: 175 RIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWT 234
Query: 260 PLLLAASRG 268
PL AA G
Sbjct: 235 PLHAAAHWG 243
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 51/245 (20%), Positives = 82/245 (33%), Gaps = 73/245 (29%)
Query: 67 GRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSK 126
G TALH A I D + + LV GA++ + + G+ P+H AA
Sbjct: 73 GLTALHQACIDDNVDMVKFLVEN------------GANINQPDNEGWIPLHAAASCGYLD 120
Query: 127 TMEVFLQFGESIGC------------------------------------SREEMISLFD 150
E + G +G EE I L D
Sbjct: 121 IAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRD 180
Query: 151 AE----------------GNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLAC 194
A G LH A G + ++L +++ ++ + +D TP+H A
Sbjct: 181 ARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAA 240
Query: 195 SQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLD 254
G + R++ E L + + + T A D++ YL + N+L
Sbjct: 241 HWGKEEACRILV-----ENLCDMEAVNKVGQTAFDVADE----DILGYLEELQKKQNLLH 291
Query: 255 KEKRS 259
EKR
Sbjct: 292 SEKRE 296
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 82/199 (41%), Gaps = 29/199 (14%)
Query: 459 NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLV 518
N TD T LH AA + R D + L++ AD N+ D R+PL A S L+
Sbjct: 51 NQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 110
Query: 519 RNKANILLKDINRRNILHLLVLNGGGHIKEFAEEV--------AAVFLGEN--------- 561
RN+A L D + L+L ++ E++ A LG++
Sbjct: 111 RNRATDL--DARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVN 168
Query: 562 -------LINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLT 614
L+ GA +++NN E+PL LAAR G Y T K LL I + D
Sbjct: 169 NVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMD---RL 225
Query: 615 PLHIASKEGFHYSVSIFQV 633
P IA + H V + +
Sbjct: 226 PRDIAQERMHHDIVRLLDL 244
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 20/168 (11%)
Query: 218 NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNT 277
N TD T LH AA + R D + L++ AD N+ D R+PL A S GV
Sbjct: 51 NQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVS---ADAQGVFQ 107
Query: 278 RILNNKK---QAVLHLATELNKVPILL-----ILLQYKDMI----DILQGGEHGRTALHI 325
++ N+ A +H T P++L + +D+I D+ + G++ALH
Sbjct: 108 ILIRNRATDLDARMHDGT----TPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHW 163
Query: 326 AAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFL 373
AA + + A +L+K+ GA+ + P+ AA+ S +T +V L
Sbjct: 164 AAAVNNVDAAVVLLKN-GANKDMQNNREETPLFLAAREGSYETAKVLL 210
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 87/202 (43%), Gaps = 18/202 (8%)
Query: 332 DECARILVKDF---GASLKRACS-NGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMI 387
+E A ++ DF GASL G +H AA + S + L+ ++ M
Sbjct: 32 EEDAPAVISDFIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANI-QDNM- 89
Query: 388 SLFAAEGNLPLHSAVHGGDFKAVELCLKSGA-KISTQQFDLSTPVHLACSQGALDIVRLM 446
G PLH+AV ++ +++ A + + D +TP+ LA ++ +
Sbjct: 90 ------GRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDL 143
Query: 447 FNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAA 506
N +N+ D + LH AA + D L+ GA+ ++ + + +PL LAA
Sbjct: 144 INSHAD-----VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAA 198
Query: 507 SRGGWKTVLTLVRNKANILLKD 528
G ++T L+ + AN + D
Sbjct: 199 REGSYETAKVLLDHFANRDITD 220
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 82/193 (42%), Gaps = 18/193 (9%)
Query: 88 SEQPECDWIMVKDF---GASLKRACS-NGYYPIHDAAKNASSKTMEVFLQFGESIGCSRE 143
SE+ E ++ DF GASL G +H AA + S + L+
Sbjct: 29 SEEEEDAPAVISDFIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADA----- 83
Query: 144 EMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGA-KISTQQFDLSTPVHLACSQGALDIV 202
++ D G PLH+AV ++ +++ A + + D +TP+ LA ++
Sbjct: 84 ---NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGML 140
Query: 203 RLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLL 262
+ N +N+ D + LH AA + D L+ GA+ ++ + + +PL
Sbjct: 141 EDLINSHAD-----VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLF 195
Query: 263 LAASRGGWKTNGV 275
LAA G ++T V
Sbjct: 196 LAAREGSYETAKV 208
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 542 GGGHIKEFAEEVAAVFLGENLINLGACI-NLKNNSNESPLHLAARYGRYNTVKKLLSSER 600
GG EE A + + I GA + N + + + LHLAA Y R + K+LL +
Sbjct: 22 GGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEA-- 79
Query: 601 GSFIINESDGEGLTPLHIA 619
S N D G TPLH A
Sbjct: 80 -SADANIQDNMGRTPLHAA 97
Score = 35.4 bits (80), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 73/171 (42%), Gaps = 13/171 (7%)
Query: 150 DAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQ 209
D G LH A A + L++ A + Q TP+H A S A + +++ +
Sbjct: 54 DRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 113
Query: 210 PSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGG 269
++ L++ TPL AA +++ LI+ AD+N +D +S L AA+
Sbjct: 114 ATD----LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 169
Query: 270 WKT------NGVNTRILNNKKQAVLHLATELNKVPILLILLQY---KDMID 311
NG N + NN+++ L LA +LL + +D+ D
Sbjct: 170 VDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITD 220
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 62/168 (36%), Gaps = 30/168 (17%)
Query: 62 QGGEHGRTALHIAAIYDFDECARILVSEQPECD----------------------WIMVK 99
Q G TALH+AA Y + A+ L+ + + I+++
Sbjct: 52 QTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIR 111
Query: 100 DFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHS 159
+ L +G P+ AA+ A +E + + D G LH
Sbjct: 112 NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA--------VDDLGKSALHW 163
Query: 160 AVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFN 207
A + A + LK+GA Q TP+ LA +G+ + +++ +
Sbjct: 164 AAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLD 211
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 80/167 (47%), Gaps = 25/167 (14%)
Query: 114 YPIHDA-AKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELC 172
YP+H A +N K E+ S+ ++ D +G +PLH +V F+A E+
Sbjct: 4 YPLHQACMENEFFKVQELL--------HSKPSLLLQKDQDGRIPLHWSV---SFQAHEIT 52
Query: 173 LKSGAKISTQQFDLS------TPVHLACSQGALDIVRLMFN--LQPSEKLVCLNSTDAQK 224
+K+ D TP H+ACS G L++V+ +++ L+P LN Q
Sbjct: 53 SFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD-----LNKITNQG 107
Query: 225 MTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWK 271
+T LH A +V Q+LI+ GA + + DK + PL AAS G K
Sbjct: 108 VTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLK 154
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 23/168 (13%)
Query: 355 YPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCL 414
YP+H A ++ L S+ +++ +G +PLH +V F+A E+
Sbjct: 4 YPLHQACMENEFFKVQELLHSKPSLLLQKDQ-------DGRIPLHWSV---SFQAHEITS 53
Query: 415 KSGAKISTQQFDLS------TPVHLACSQGALDIVRLMFN--LQPSEKLVCLNSTDAQKM 466
+K+ D TP H+ACS G L++V+ +++ L+P LN Q +
Sbjct: 54 FLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD-----LNKITNQGV 108
Query: 467 TPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTV 514
T LH A +V Q+LI+ GA + + DK + PL AAS G K +
Sbjct: 109 TCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLI 156
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 82/198 (41%), Gaps = 18/198 (9%)
Query: 395 NLPLHSAVHGGDFKAVELCLKSGAKISTQQ-FDLSTPVHLACSQGALDIVRLMFNLQPSE 453
N PLH A +F V+ L S + Q+ D P+H + S A +I + L E
Sbjct: 3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFL--LSKME 60
Query: 454 KLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDE--GADLNVLDKEKRSPLLLAASRGGW 511
+ + D TP H A +VV+ L D DLN + + + L LA + +
Sbjct: 61 NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWF 120
Query: 512 KTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLG-ACIN 570
+ L+ N A++ +KD + LH A V ++ L E L LG + +N
Sbjct: 121 EVSQFLIENGASVRIKDKFNQIPLHR------------AASVGSLKLIELLCGLGKSAVN 168
Query: 571 LKNNSNESPLHLAARYGR 588
++ +PL A G
Sbjct: 169 WQDKQGWTPLFHALAEGH 186
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 84/198 (42%), Gaps = 20/198 (10%)
Query: 60 ILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDA 119
+LQ + GR LH + + E L+S+ + + D+ +G+ P H A
Sbjct: 29 LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN---LDDY------PDDSGWTPFHIA 79
Query: 120 AKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKI 179
S +EV + + ++ +G LH AV F+ + +++GA +
Sbjct: 80 C---SVGNLEVVKSLYDR---PLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV 133
Query: 180 STQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDV 239
+ P+H A S G+L ++ L+ L S +N D Q TPL A D
Sbjct: 134 RIKDKFNQIPLHRAASVGSLKLIELLCGLGKS----AVNWQDKQGWTPLFHALAEGHGDA 189
Query: 240 VQYLIDE-GADLNVLDKE 256
L+++ GA+ +++D +
Sbjct: 190 AVLLVEKYGAEYDLVDNK 207
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 80/189 (42%), Gaps = 13/189 (6%)
Query: 312 ILQGGEHGRTALHIAAIYDFDECARILVKDF-GASLKRACSN-GYYPIHDAAKNASSKTM 369
+LQ + GR LH + + E L+ +L + G+ P H A S +
Sbjct: 29 LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC---SVGNL 85
Query: 370 EVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLST 429
EV + + ++ +G LH AV F+ + +++GA + +
Sbjct: 86 EVVKSLYDR---PLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQI 142
Query: 430 PVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDE-G 488
P+H A S G+L ++ L+ L S +N D Q TPL A D L+++ G
Sbjct: 143 PLHRAASVGSLKLIELLCGLGKS----AVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYG 198
Query: 489 ADLNVLDKE 497
A+ +++D +
Sbjct: 199 AEYDLVDNK 207
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 5/101 (4%)
Query: 152 EGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPS 211
+GN PLH+A G + V+ L GA ++ + D +TP+HLA G +IV+L+
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL----- 62
Query: 212 EKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNV 252
K +N+ TP H A ++V+ L +GAD+N
Sbjct: 63 AKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNA 103
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 5/101 (4%)
Query: 393 EGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPS 452
+GN PLH+A G + V+ L GA ++ + D +TP+HLA G +IV+L+
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL----- 62
Query: 453 EKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNV 493
K +N+ TP H A ++V+ L +GAD+N
Sbjct: 63 AKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNA 103
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 185 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 244
D +TP+H A G + V+ + K +N+ TPLH AA ++V+ L+
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLL-----SKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL 62
Query: 245 DEGADLNVLDKEKRSPLLLAASRG 268
+GAD+N K+ +P LA G
Sbjct: 63 AKGADVNARSKDGNTPEHLAKKNG 86
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 426 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 485
D +TP+H A G + V+ + K +N+ TPLH AA ++V+ L+
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLL-----SKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL 62
Query: 486 DEGADLNVLDKEKRSPLLLAASRG 509
+GAD+N K+ +P LA G
Sbjct: 63 AKGADVNARSKDGNTPEHLAKKNG 86
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 46/99 (46%), Gaps = 15/99 (15%)
Query: 535 LHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKK 594
LH NG AEEV + L++ GA +N ++ +PLHLAA+ G VK
Sbjct: 13 LHNAAKNG------HAEEV------KKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKL 60
Query: 595 LLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQV 633
LL+ +N +G TP H+A K G H V +
Sbjct: 61 LLAK---GADVNARSKDGNTPEHLAKKNGHHEIVKLLDA 96
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%)
Query: 467 TPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILL 526
TPLH AA + V+ L+ +GAD+N K+ +PL LAA G + V L+ A++
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNA 70
Query: 527 KDINRRNILHLLVLNG 542
+ + HL NG
Sbjct: 71 RSKDGNTPEHLAKKNG 86
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 11/117 (9%)
Query: 313 LQGGEHGRTALHIAAIYDF-DECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEV 371
+ G + G T LH AA +E ++L K GA + +G P+H AAKN ++ +++
Sbjct: 3 MWGSKDGNTPLHNAAKNGHAEEVKKLLSK--GADVNARSKDGNTPLHLAAKNGHAEIVKL 60
Query: 372 FLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLS 428
L G + + +GN P H A G + V+L GA ++ + + S
Sbjct: 61 LLAKGADVNARSK--------DGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSS 109
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 578 SPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGF 624
+PLH AA+ G VKKLLS +N +G TPLH+A+K G
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSK---GADVNARSKDGNTPLHLAAKNGH 54
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 20/127 (15%)
Query: 61 LQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAA 120
+ G + G T LH AA E + L+S+ GA + +G P+H AA
Sbjct: 3 MWGSKDGNTPLHNAAKNGHAEEVKKLLSK------------GADVNARSKDGNTPLHLAA 50
Query: 121 KNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKIS 180
KN ++ +++ L G + + +GN P H A G + V+L GA ++
Sbjct: 51 KNGHAEIVKLLLAKGADVNARSK--------DGNTPEHLAKKNGHHEIVKLLDAKGADVN 102
Query: 181 TQQFDLS 187
+ + S
Sbjct: 103 ARSWGSS 109
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 80/167 (47%), Gaps = 25/167 (14%)
Query: 114 YPIHDA-AKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELC 172
YP+H A +N K E+ S+ ++ D +G +PLH +V F+A E+
Sbjct: 4 YPLHQACMENEFFKVQELL--------HSKPSLLLQKDQDGRIPLHWSV---SFQAHEIT 52
Query: 173 LKSGAKISTQQFDLS------TPVHLACSQGALDIVRLMFN--LQPSEKLVCLNSTDAQK 224
+K+ D TP H+ACS G L++V+ +++ L+P LN Q
Sbjct: 53 SFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD-----LNKITNQG 107
Query: 225 MTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWK 271
+T LH A +V Q+LI+ GA + + DK + PL AAS G K
Sbjct: 108 VTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLK 154
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 23/168 (13%)
Query: 355 YPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCL 414
YP+H A ++ L S+ +++ +G +PLH +V F+A E+
Sbjct: 4 YPLHQACMENEFFKVQELLHSKPSLLLQKDQ-------DGRIPLHWSV---SFQAHEITS 53
Query: 415 KSGAKISTQQFDLS------TPVHLACSQGALDIVRLMFN--LQPSEKLVCLNSTDAQKM 466
+K+ D TP H+ACS G L++V+ +++ L+P LN Q +
Sbjct: 54 FLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD-----LNKITNQGV 108
Query: 467 TPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTV 514
T LH A +V Q+LI+ GA + + DK + PL AAS G K +
Sbjct: 109 TCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLI 156
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 82/198 (41%), Gaps = 18/198 (9%)
Query: 395 NLPLHSAVHGGDFKAVELCLKSGAKISTQQ-FDLSTPVHLACSQGALDIVRLMFNLQPSE 453
N PLH A +F V+ L S + Q+ D P+H + S A +I + L E
Sbjct: 3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFL--LSKME 60
Query: 454 KLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDE--GADLNVLDKEKRSPLLLAASRGGW 511
+ + D TP H A +VV+ L D DLN + + + L LA + +
Sbjct: 61 NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWF 120
Query: 512 KTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLG-ACIN 570
+ L+ N A++ +KD + LH A V ++ L E L LG + +N
Sbjct: 121 EVSQFLIENGASVRIKDKFNQIPLHR------------AASVGSLKLIELLCGLGKSAVN 168
Query: 571 LKNNSNESPLHLAARYGR 588
++ +PL A G
Sbjct: 169 WQDKQGWTPLFHALAEGH 186
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 84/198 (42%), Gaps = 20/198 (10%)
Query: 60 ILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDA 119
+LQ + GR LH + + E L+S+ + + D+ +G+ P H A
Sbjct: 29 LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN---LDDY------PDDSGWTPFHIA 79
Query: 120 AKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKI 179
S +EV + + ++ +G LH AV F+ + +++GA +
Sbjct: 80 C---SVGNLEVVKSLYDR---PLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV 133
Query: 180 STQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDV 239
+ P+H A S G+L ++ L+ L S +N D Q TPL A D
Sbjct: 134 RIKDKFNQIPLHRAASVGSLKLIELLCGLGKS----AVNWQDKQGWTPLFHALAEGHGDA 189
Query: 240 VQYLIDE-GADLNVLDKE 256
L+++ GA+ +++D +
Sbjct: 190 AVLLVEKYGAEYDLVDNK 207
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 80/189 (42%), Gaps = 13/189 (6%)
Query: 312 ILQGGEHGRTALHIAAIYDFDECARILVKDF-GASLKRACSN-GYYPIHDAAKNASSKTM 369
+LQ + GR LH + + E L+ +L + G+ P H A S +
Sbjct: 29 LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC---SVGNL 85
Query: 370 EVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLST 429
EV + + ++ +G LH AV F+ + +++GA + +
Sbjct: 86 EVVKSLYDR---PLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQI 142
Query: 430 PVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDE-G 488
P+H A S G+L ++ L+ L S +N D Q TPL A D L+++ G
Sbjct: 143 PLHRAASVGSLKLIELLCGLGKS----AVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYG 198
Query: 489 ADLNVLDKE 497
A+ +++D +
Sbjct: 199 AEYDLVDNK 207
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 80/167 (47%), Gaps = 25/167 (14%)
Query: 114 YPIHDA-AKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELC 172
YP+H A +N K E+ S+ ++ D +G +PLH +V F+A E+
Sbjct: 4 YPLHQACMENEFFKVQELL--------HSKPSLLLQKDQDGRIPLHWSV---SFQAHEIT 52
Query: 173 LKSGAKISTQQFDLS------TPVHLACSQGALDIVRLMFN--LQPSEKLVCLNSTDAQK 224
+K+ D TP H+ACS G L++V+ +++ L+P LN Q
Sbjct: 53 SFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD-----LNKITNQG 107
Query: 225 MTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWK 271
+T LH A +V Q+LI+ GA + + DK + PL AAS G K
Sbjct: 108 VTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLK 154
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 23/168 (13%)
Query: 355 YPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCL 414
YP+H A ++ L S+ +++ +G +PLH +V F+A E+
Sbjct: 4 YPLHQACMENEFFKVQELLHSKPSLLLQKDQ-------DGRIPLHWSV---SFQAHEITS 53
Query: 415 KSGAKISTQQFDLS------TPVHLACSQGALDIVRLMFN--LQPSEKLVCLNSTDAQKM 466
+K+ D TP H+ACS G L++V+ +++ L+P LN Q +
Sbjct: 54 FLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD-----LNKITNQGV 108
Query: 467 TPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTV 514
T LH A +V Q+LI+ GA + + DK + PL AAS G K +
Sbjct: 109 TCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLI 156
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 82/198 (41%), Gaps = 18/198 (9%)
Query: 395 NLPLHSAVHGGDFKAVELCLKSGAKISTQQ-FDLSTPVHLACSQGALDIVRLMFNLQPSE 453
N PLH A +F V+ L S + Q+ D P+H + S A +I + L E
Sbjct: 3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFL--LSKME 60
Query: 454 KLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDE--GADLNVLDKEKRSPLLLAASRGGW 511
+ + D TP H A +VV+ L D DLN + + + L LA + +
Sbjct: 61 NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWF 120
Query: 512 KTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLG-ACIN 570
+ L+ N A++ +KD + LH A V ++ L E L LG + +N
Sbjct: 121 EVSQFLIENGASVRIKDKFNQIPLHR------------AASVGSLKLIELLCGLGKSAVN 168
Query: 571 LKNNSNESPLHLAARYGR 588
++ +PL A G
Sbjct: 169 WQDKQGWTPLFHALAEGH 186
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 84/198 (42%), Gaps = 20/198 (10%)
Query: 60 ILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDA 119
+LQ + GR LH + + E L+S+ + + D+ +G+ P H A
Sbjct: 29 LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN---LDDY------PDDSGWTPFHIA 79
Query: 120 AKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKI 179
S +EV + + ++ +G LH AV F+ + +++GA +
Sbjct: 80 C---SVGNLEVVKSLYDR---PLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV 133
Query: 180 STQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDV 239
+ P+H A S G+L ++ L+ L S +N D Q TPL A D
Sbjct: 134 RIKDKFNQIPLHRAASVGSLKLIELLCGLGKS----AVNWQDKQGWTPLFHALAEGHGDA 189
Query: 240 VQYLIDE-GADLNVLDKE 256
L+++ GA+ +++D +
Sbjct: 190 AVLLVEKYGAEYDLVDNK 207
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 80/189 (42%), Gaps = 13/189 (6%)
Query: 312 ILQGGEHGRTALHIAAIYDFDECARILVKDF-GASLKRACSN-GYYPIHDAAKNASSKTM 369
+LQ + GR LH + + E L+ +L + G+ P H A S +
Sbjct: 29 LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC---SVGNL 85
Query: 370 EVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLST 429
EV + + ++ +G LH AV F+ + +++GA + +
Sbjct: 86 EVVKSLYDR---PLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQI 142
Query: 430 PVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDE-G 488
P+H A S G+L ++ L+ L S +N D Q TPL A D L+++ G
Sbjct: 143 PLHRAASVGSLKLIELLCGLGKS----AVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYG 198
Query: 489 ADLNVLDKE 497
A+ +++D +
Sbjct: 199 AEYDLVDNK 207
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 82/199 (41%), Gaps = 29/199 (14%)
Query: 459 NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLV 518
N TD T LH AA + R D + L++ AD N+ D R+PL A S L+
Sbjct: 51 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 110
Query: 519 RNKANILLKDINRRNILHLLVLNGGGHIKEFAEEV--------AAVFLGEN--------- 561
RN+A L D + L+L ++ E++ A LG++
Sbjct: 111 RNRATDL--DARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVN 168
Query: 562 -------LINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLT 614
L+ GA +++NN E+PL LAAR G Y T K LL I + D
Sbjct: 169 NVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMD---RL 225
Query: 615 PLHIASKEGFHYSVSIFQV 633
P IA + H V + +
Sbjct: 226 PRDIAQERMHHDIVRLLDL 244
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 542 GGGHIKEFAEEVAAVFLGENLINLGACI-NLKNNSNESPLHLAARYGRYNTVKKLLSSER 600
GG EE A + + I GA + N + + E+ LHLAARY R + K+LL +
Sbjct: 22 GGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEA-- 79
Query: 601 GSFIINESDGEGLTPLHIA 619
S N D G TPLH A
Sbjct: 80 -SADANIQDNMGRTPLHAA 97
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 20/168 (11%)
Query: 218 NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNT 277
N TD T LH AA + R D + L++ AD N+ D R+PL A S GV
Sbjct: 51 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVS---ADAQGVFQ 107
Query: 278 RILNNKK---QAVLHLATELNKVPILL-----ILLQYKDMI----DILQGGEHGRTALHI 325
++ N+ A +H T P++L + +D+I D+ + G++ALH
Sbjct: 108 ILIRNRATDLDARMHDGT----TPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHW 163
Query: 326 AAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFL 373
AA + + A +L+K+ GA+ + P+ AA+ S +T +V L
Sbjct: 164 AAAVNNVDAAVVLLKN-GANKDMQNNREETPLFLAAREGSYETAKVLL 210
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 88/202 (43%), Gaps = 18/202 (8%)
Query: 332 DECARILVKDF---GASLKRACS-NGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMI 387
+E A ++ DF GASL G +H AA+ + S + L+ ++ M
Sbjct: 32 EEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANI-QDNM- 89
Query: 388 SLFAAEGNLPLHSAVHGGDFKAVELCLKSGA-KISTQQFDLSTPVHLACSQGALDIVRLM 446
G PLH+AV ++ +++ A + + D +TP+ LA ++ +
Sbjct: 90 ------GRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDL 143
Query: 447 FNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAA 506
N +N+ D + LH AA + D L+ GA+ ++ + + +PL LAA
Sbjct: 144 INSHAD-----VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAA 198
Query: 507 SRGGWKTVLTLVRNKANILLKD 528
G ++T L+ + AN + D
Sbjct: 199 REGSYETAKVLLDHFANRDITD 220
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 83/193 (43%), Gaps = 18/193 (9%)
Query: 88 SEQPECDWIMVKDF---GASLKRACS-NGYYPIHDAAKNASSKTMEVFLQFGESIGCSRE 143
SE+ E ++ DF GASL G +H AA+ + S + L+
Sbjct: 29 SEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA----- 83
Query: 144 EMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGA-KISTQQFDLSTPVHLACSQGALDIV 202
++ D G PLH+AV ++ +++ A + + D +TP+ LA ++
Sbjct: 84 ---NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGML 140
Query: 203 RLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLL 262
+ N +N+ D + LH AA + D L+ GA+ ++ + + +PL
Sbjct: 141 EDLINSHAD-----VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLF 195
Query: 263 LAASRGGWKTNGV 275
LAA G ++T V
Sbjct: 196 LAAREGSYETAKV 208
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 73/171 (42%), Gaps = 13/171 (7%)
Query: 150 DAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQ 209
D G LH A A + L++ A + Q TP+H A S A + +++ +
Sbjct: 54 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 113
Query: 210 PSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGG 269
++ L++ TPL AA +++ LI+ AD+N +D +S L AA+
Sbjct: 114 ATD----LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 169
Query: 270 WKT------NGVNTRILNNKKQAVLHLATELNKVPILLILLQY---KDMID 311
NG N + NN+++ L LA +LL + +D+ D
Sbjct: 170 VDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITD 220
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 62/168 (36%), Gaps = 30/168 (17%)
Query: 62 QGGEHGRTALHIAAIYDFDECARILVSEQPECD----------------------WIMVK 99
Q G TALH+AA Y + A+ L+ + + I+++
Sbjct: 52 QTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIR 111
Query: 100 DFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHS 159
+ L +G P+ AA+ A +E + + D G LH
Sbjct: 112 NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA--------VDDLGKSALHW 163
Query: 160 AVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFN 207
A + A + LK+GA Q TP+ LA +G+ + +++ +
Sbjct: 164 AAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLD 211
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 71/162 (43%), Gaps = 26/162 (16%)
Query: 459 NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLV 518
N TD T LH AA + R D + L++ AD N+ D R+PL A S L+
Sbjct: 52 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 111
Query: 519 RNKANILLKDINRRNILHLLVLNGGGHIKEFAEEV--------AAVFLGEN--------- 561
RN+A L D + L+L ++ E++ A LG++
Sbjct: 112 RNRATDL--DARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVN 169
Query: 562 -------LINLGACINLKNNSNESPLHLAARYGRYNTVKKLL 596
L+ GA +++NN E+PL LAAR G Y T K LL
Sbjct: 170 NVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLL 211
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 20/168 (11%)
Query: 218 NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNT 277
N TD T LH AA + R D + L++ AD N+ D R+PL A S GV
Sbjct: 52 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVS---ADAQGVFQ 108
Query: 278 RILNNKK---QAVLHLATELNKVPILL-----ILLQYKDMI----DILQGGEHGRTALHI 325
++ N+ A +H T P++L + +D+I D+ + G++ALH
Sbjct: 109 ILIRNRATDLDARMHDGT----TPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHW 164
Query: 326 AAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFL 373
AA + + A +L+K+ GA+ + P+ AA+ S +T +V L
Sbjct: 165 AAAVNNVDAAVVLLKN-GANKDMQNNREETPLFLAAREGSYETAKVLL 211
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 542 GGGHIKEFAEEVAAVFLGENLINLGACI-NLKNNSNESPLHLAARYGRYNTVKKLLSSER 600
GG EE A + + I GA + N + + E+ LHLAARY R + K+LL +
Sbjct: 23 GGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEA-- 80
Query: 601 GSFIINESDGEGLTPLHIA 619
S N D G TPLH A
Sbjct: 81 -SADANIQDNMGRTPLHAA 98
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 88/202 (43%), Gaps = 18/202 (8%)
Query: 332 DECARILVKDF---GASLKRACS-NGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMI 387
+E A ++ DF GASL G +H AA+ + S + L+ ++ M
Sbjct: 33 EEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANI-QDNM- 90
Query: 388 SLFAAEGNLPLHSAVHGGDFKAVELCLKSGA-KISTQQFDLSTPVHLACSQGALDIVRLM 446
G PLH+AV ++ +++ A + + D +TP+ LA ++ +
Sbjct: 91 ------GRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDL 144
Query: 447 FNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAA 506
N +N+ D + LH AA + D L+ GA+ ++ + + +PL LAA
Sbjct: 145 INSHAD-----VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAA 199
Query: 507 SRGGWKTVLTLVRNKANILLKD 528
G ++T L+ + AN + D
Sbjct: 200 REGSYETAKVLLDHFANRDITD 221
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 83/193 (43%), Gaps = 18/193 (9%)
Query: 88 SEQPECDWIMVKDF---GASLKRACS-NGYYPIHDAAKNASSKTMEVFLQFGESIGCSRE 143
SE+ E ++ DF GASL G +H AA+ + S + L+
Sbjct: 30 SEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA----- 84
Query: 144 EMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGA-KISTQQFDLSTPVHLACSQGALDIV 202
++ D G PLH+AV ++ +++ A + + D +TP+ LA ++
Sbjct: 85 ---NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGML 141
Query: 203 RLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLL 262
+ N +N+ D + LH AA + D L+ GA+ ++ + + +PL
Sbjct: 142 EDLINSHAD-----VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLF 196
Query: 263 LAASRGGWKTNGV 275
LAA G ++T V
Sbjct: 197 LAAREGSYETAKV 209
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 74/202 (36%), Gaps = 36/202 (17%)
Query: 67 GRTALHIAAIYDFDECARILVSEQPECD----------------------WIMVKDFGAS 104
G TALH+AA Y + A+ L+ + + I++++
Sbjct: 58 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD 117
Query: 105 LKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGG 164
L +G P+ AA+ A +E + + D G LH A
Sbjct: 118 LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA--------VDDLGKSALHWAAAVN 169
Query: 165 DFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQK 224
+ A + LK+GA Q TP+ LA +G+ + +++ + + TD
Sbjct: 170 NVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLL-----DHFANRDITDHMD 224
Query: 225 MTPLHCAAMFDRCDVVQYLIDE 246
P A D+V+ L+DE
Sbjct: 225 RLPRDIAQERMHHDIVR-LLDE 245
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 82/191 (42%), Gaps = 20/191 (10%)
Query: 398 LHSAVHGGDFKAVELCLKSGAKISTQQFDL-STPVHLACSQGALDIVRLMFNLQPSEKLV 456
LH A V+ + GA + DL STP+H A QG L +V + L+
Sbjct: 46 LHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLI 105
Query: 457 CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGW--KTV 514
D + + +H AA F +V YLI +G D++++D+ +PL+ AA R T
Sbjct: 106 -----DGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTR 160
Query: 515 LTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNN 574
L L N + L ++ LH VL G + L+ GA ++ +N
Sbjct: 161 LLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISL------------LLEAGANVDAQNI 208
Query: 575 SNESPLHLAAR 585
ES L LA +
Sbjct: 209 KGESALDLAKQ 219
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 74/169 (43%), Gaps = 22/169 (13%)
Query: 150 DAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDL-STPVHLACSQGALDIVRLMFNL 208
D E LH A V+ + GA + DL STP+H A QG L +V +
Sbjct: 39 DKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKY 98
Query: 209 QPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
L+ D + + +H AA F +V YLI +G D++++D+ +PL+ AA R
Sbjct: 99 GADPSLI-----DGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYR- 152
Query: 269 GWKTNGVN-TRIL-----------NNKKQAVLHLATELNKVPILLILLQ 305
T+ V+ TR+L K LH A ++ +LL+
Sbjct: 153 ---THSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLE 198
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 86/215 (40%), Gaps = 37/215 (17%)
Query: 221 DAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRIL 280
D + +T LH AA+ +R D+V+Y I +GA ++ L + S
Sbjct: 39 DKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNS--------------------- 77
Query: 281 NNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVK 340
LH AT + +++ L++Y ++ G G + +H+AA + L+
Sbjct: 78 -----TPLHWATRQGHLSMVVQLMKYGADPSLIDG--EGCSCIHLAAQFGHTSIVAYLIA 130
Query: 341 DFGASLKRACSNGYYPIHDAA-KNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLH 399
G + NG P+ AA + S + L F S+ + N LH
Sbjct: 131 K-GQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDK-------YHKNTALH 182
Query: 400 SAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLA 434
AV G+ + L L++GA + Q + + LA
Sbjct: 183 WAVLAGNTTVISLLLEAGANVDAQNIKGESALDLA 217
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 80/210 (38%), Gaps = 24/210 (11%)
Query: 59 DILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHD 118
D+ Q + T LH AAI + + + +S+ +V G L P+H
Sbjct: 34 DVRQPDKENVTLLHWAAINNRIDLVKYYISKGA-----IVDQLGGDLNST------PLHW 82
Query: 119 AAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAK 178
A + + +++G SL D EG +H A G V + G
Sbjct: 83 ATRQGHLSMVVQLMKYGADP--------SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQD 134
Query: 179 ISTQQFDLSTPVHLACSQG-ALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRC 237
+ + TP+ A + ++D RL+ S L K T LH A +
Sbjct: 135 VDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNL----GDKYHKNTALHWAVLAGNT 190
Query: 238 DVVQYLIDEGADLNVLDKEKRSPLLLAASR 267
V+ L++ GA+++ + + S L LA R
Sbjct: 191 TVISLLLEAGANVDAQNIKGESALDLAKQR 220
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 13/124 (10%)
Query: 462 DAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRS-PLLLAASRGGWKTVLTLVRN 520
D + +T LH AA+ +R D+V+Y I +GA ++ L + S PL A +G V+ L++
Sbjct: 39 DKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKY 98
Query: 521 KANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPL 580
A+ L D + +HL G I + LI G +++ + + +PL
Sbjct: 99 GADPSLIDGEGCSCIHLAAQFGHTSIVAY------------LIAKGQDVDMMDQNGMTPL 146
Query: 581 HLAA 584
AA
Sbjct: 147 MWAA 150
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 76/205 (37%), Gaps = 25/205 (12%)
Query: 311 DILQGGEHGRTALHIAAIYDFDECARI------LVKDFGASLKRACSNGYYPIHDAAKNA 364
D+ Q + T LH AAI + + + +V G L P+H A +
Sbjct: 34 DVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNST------PLHWATRQG 87
Query: 365 SSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQ 424
+ +++G SL EG +H A G V + G +
Sbjct: 88 HLSMVVQLMKYGADP--------SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMD 139
Query: 425 FDLSTPVHLACSQG-ALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQY 483
+ TP+ A + ++D RL+ S L K T LH A + V+
Sbjct: 140 QNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNL----GDKYHKNTALHWAVLAGNTTVISL 195
Query: 484 LIDEGADLNVLDKEKRSPLLLAASR 508
L++ GA+++ + + S L LA R
Sbjct: 196 LLEAGANVDAQNIKGESALDLAKQR 220
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 563 INLGACIN-LKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASK 621
I+ GA ++ L + N +PLH A R G + V +L+ +I DGEG + +H+A++
Sbjct: 62 ISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLI---DGEGCSCIHLAAQ 118
Query: 622 EGFHYSVSIF 631
G H S+ +
Sbjct: 119 FG-HTSIVAY 127
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 64/159 (40%), Gaps = 22/159 (13%)
Query: 36 LHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDW 95
LH AT + +++ L++Y ++ G G + +H+AA + L+++ + D
Sbjct: 80 LHWATRQGHLSMVVQLMKYGADPSLIDG--EGCSCIHLAAQFGHTSIVAYLIAKGQDVDM 137
Query: 96 IMVKDFGASLKRACSNGYYPIHDAA-KNASSKTMEVFLQFGESIGCSREEMISLFDAEGN 154
+ NG P+ AA + S + L F S+ + N
Sbjct: 138 M------------DQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDK-------YHKN 178
Query: 155 LPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLA 193
LH AV G+ + L L++GA + Q + + LA
Sbjct: 179 TALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLA 217
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 82/194 (42%), Gaps = 30/194 (15%)
Query: 459 NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLV 518
N TD T LH AA + R D + L++ AD N+ D R+PL A S L+
Sbjct: 19 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 78
Query: 519 RNKANILLKDINRRNILHLLVLNGGGHIKEFAEEV--------AAVFLGEN--------- 561
RN+A L D + L+L ++ E++ A LG++
Sbjct: 79 RNRATDL--DARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVN 136
Query: 562 -------LINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLT 614
L+ GA +++NN E+PL LAAR G Y T K LL I + D
Sbjct: 137 NVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMD---RL 193
Query: 615 PLHIASKEGFHYSV 628
P IA +E H+ +
Sbjct: 194 PRDIA-QERMHHDI 206
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 20/168 (11%)
Query: 218 NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNT 277
N TD T LH AA + R D + L++ AD N+ D R+PL A S GV
Sbjct: 19 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVS---ADAQGVFQ 75
Query: 278 RILNNKK---QAVLHLATELNKVPILL-----ILLQYKDMI----DILQGGEHGRTALHI 325
++ N+ A +H T P++L + +D+I D+ + G++ALH
Sbjct: 76 ILIRNRATDLDARMHDGT----TPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHW 131
Query: 326 AAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFL 373
AA + + A +L+K+ GA+ + P+ AA+ S +T +V L
Sbjct: 132 AAAVNNVDAAVVLLKN-GANKDMQNNREETPLFLAAREGSYETAKVLL 178
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 86/199 (43%), Gaps = 18/199 (9%)
Query: 335 ARILVKDF---GASLKRACS-NGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLF 390
A ++ DF GASL G +H AA+ + S + L+ ++ M
Sbjct: 3 APAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANI-QDNM---- 57
Query: 391 AAEGNLPLHSAVHGGDFKAVELCLKSGA-KISTQQFDLSTPVHLACSQGALDIVRLMFNL 449
G PLH+AV ++ +++ A + + D +TP+ LA ++ + N
Sbjct: 58 ---GRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS 114
Query: 450 QPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 509
+N+ D + LH AA + D L+ GA+ ++ + + +PL LAA G
Sbjct: 115 HAD-----VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREG 169
Query: 510 GWKTVLTLVRNKANILLKD 528
++T L+ + AN + D
Sbjct: 170 SYETAKVLLDHFANRDITD 188
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 77/184 (41%), Gaps = 18/184 (9%)
Query: 97 MVKDF---GASLKRACS-NGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAE 152
++ DF GASL G +H AA+ + S + L+ D
Sbjct: 6 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ--------DNM 57
Query: 153 GNLPLHSAVHGGDFKAVELCLKSGA-KISTQQFDLSTPVHLACSQGALDIVRLMFNLQPS 211
G PLH+AV ++ +++ A + + D +TP+ LA ++ + N
Sbjct: 58 GRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD 117
Query: 212 EKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWK 271
+N+ D + LH AA + D L+ GA+ ++ + + +PL LAA G ++
Sbjct: 118 -----VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYE 172
Query: 272 TNGV 275
T V
Sbjct: 173 TAKV 176
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 73/171 (42%), Gaps = 13/171 (7%)
Query: 150 DAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQ 209
D G LH A A + L++ A + Q TP+H A S A + +++ +
Sbjct: 22 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 81
Query: 210 PSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGG 269
++ L++ TPL AA +++ LI+ AD+N +D +S L AA+
Sbjct: 82 ATD----LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 137
Query: 270 WKT------NGVNTRILNNKKQAVLHLATELNKVPILLILLQY---KDMID 311
NG N + NN+++ L LA +LL + +D+ D
Sbjct: 138 VDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITD 188
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 75/207 (36%), Gaps = 36/207 (17%)
Query: 62 QGGEHGRTALHIAAIYDFDECARILVSEQPECD----------------------WIMVK 99
Q G TALH+AA Y + A+ L+ + + I+++
Sbjct: 20 QTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIR 79
Query: 100 DFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHS 159
+ L +G P+ AA+ A +E + + D G LH
Sbjct: 80 NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA--------VDDLGKSALHW 131
Query: 160 AVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNS 219
A + A + LK+GA Q TP+ LA +G+ + +++ + +
Sbjct: 132 AAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLL-----DHFANRDI 186
Query: 220 TDAQKMTPLHCAAMFDRCDVVQYLIDE 246
TD P A D+V+ L+DE
Sbjct: 187 TDHMDRLPRDIAQERMHHDIVR-LLDE 212
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 121/275 (44%), Gaps = 41/275 (14%)
Query: 360 AAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAK 419
A +N ++ L+ G ++ EE G PLH+AV VEL L+ GA
Sbjct: 12 AVQNEDVDLVQQLLEGGANVNFQEEEG-------GWTPLHNAVQMSREDIVELLLRHGAD 64
Query: 420 ISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCD 479
++ + +TP LA G++ +++L + K +N D T AA++ +
Sbjct: 65 PVLRKKNGATPFLLAAIAGSVKLLKLFLS-----KGADVNECDFYGFTAFMEAAVYGKVK 119
Query: 480 VVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANI-LLK--------DIN 530
+++L GA++N+ K K L R G T L K ++ +LK D+N
Sbjct: 120 ALKFLYKRGANVNLRRKTKEDQERL---RKGGATALMDAAEKGHVEVLKILLDEMGADVN 176
Query: 531 ------RRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAA 584
R ++H L+ + ++ A L L++ GA +N++ ++PL LA
Sbjct: 177 ACDNMGRNALIHALLSSDDSDVE------AITHL---LLDHGADVNVRGERGKTPLILAV 227
Query: 585 RYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIA 619
V++LL E IN++D +G T L +A
Sbjct: 228 EKKHLGLVQRLLEQEH--IEINDTDSDGKTALLLA 260
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 12/139 (8%)
Query: 119 AAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAK 178
A +N ++ L+ G ++ EE G PLH+AV VEL L+ GA
Sbjct: 12 AVQNEDVDLVQQLLEGGANVNFQEEEG-------GWTPLHNAVQMSREDIVELLLRHGAD 64
Query: 179 ISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCD 238
++ + +TP LA G++ +++L + K +N D T AA++ +
Sbjct: 65 PVLRKKNGATPFLLAAIAGSVKLLKLFLS-----KGADVNECDFYGFTAFMEAAVYGKVK 119
Query: 239 VVQYLIDEGADLNVLDKEK 257
+++L GA++N+ K K
Sbjct: 120 ALKFLYKRGANVNLRRKTK 138
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 66/281 (23%), Positives = 108/281 (38%), Gaps = 61/281 (21%)
Query: 226 TPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQ 285
TPLH A R D+V+ L+ GAD + K +P LLAA G K
Sbjct: 41 TPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVK-------------- 86
Query: 286 AVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGAS 345
L+ L D+ + +G TA AA+Y + + L K GA+
Sbjct: 87 ---------------LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYK-RGAN 130
Query: 346 L----------KRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGN 395
+ +R G + DAA+ + +++ L +EM + A N
Sbjct: 131 VNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILL----------DEMGADVNACDN 180
Query: 396 LPLHSAVHG------GDFKAV-ELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFN 448
+ ++ +H D +A+ L L GA ++ + TP+ LA + L +V+ +
Sbjct: 181 MGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240
Query: 449 LQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGA 489
+ E +N TD+ T L A + + L GA
Sbjct: 241 QEHIE----INDTDSDGKTALLLAVELKLKKIAELLCKRGA 277
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 95/218 (43%), Gaps = 29/218 (13%)
Query: 110 SNGYYPIHDAAKNASSKTMEVFLQFGESIG-CSREEMISLFDAEGNLPLHSAVHGGDFKA 168
NG P AA S K +++FL G + C + +A AV+G KA
Sbjct: 70 KNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEA--------AVYG-KVKA 120
Query: 169 VELCLKSGAKISTQQFDL----------STPVHLACSQGALDIVRLMFNLQPSEKLVCLN 218
++ K GA ++ ++ +T + A +G +++++++ + ++ C N
Sbjct: 121 LKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDN 180
Query: 219 STDAQKMTPLHCAAMFDRCDV---VQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGV 275
+ +H D DV L+D GAD+NV + ++PL+LA + K G+
Sbjct: 181 MG---RNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEK---KHLGL 234
Query: 276 NTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDIL 313
R+L + + ++ +L + L+ K + ++L
Sbjct: 235 VQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELL 272
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 101/233 (43%), Gaps = 35/233 (15%)
Query: 354 YYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELC 413
+ P+H+AA + ++ + G ++ + +S PLH A GG V++
Sbjct: 60 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVS--------PLHEACLGGHLSCVKIL 111
Query: 414 LKSGAKISTQQFDLSTPVHLACSQGALDIVRLMF----NLQPSEKLVCLNSTDAQKMTPL 469
LK GA+++ D TP+ AC G+ D V L+ ++QP L +P+
Sbjct: 112 LKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA----------SPI 161
Query: 470 HCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDI 529
H AA + V LI G +++ +PL LA V L+ + A++ +
Sbjct: 162 HEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADV-NQGK 220
Query: 530 NRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHL 582
+ + LH +V + +EE+A + L++ GA KN + P+ L
Sbjct: 221 GQDSPLHAVV-------RTASEELACL-----LMDFGADTQAKNAEGKRPVEL 261
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 69/156 (44%), Gaps = 22/156 (14%)
Query: 113 YYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELC 172
+ P+H+AA + ++ + G ++ + +S PLH A GG V++
Sbjct: 60 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVS--------PLHEACLGGHLSCVKIL 111
Query: 173 LKSGAKISTQQFDLSTPVHLACSQGALDIVRLMF----NLQPSEKLVCLNSTDAQKMTPL 228
LK GA+++ D TP+ AC G+ D V L+ ++QP L +P+
Sbjct: 112 LKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA----------SPI 161
Query: 229 HCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLA 264
H AA + V LI G +++ +PL LA
Sbjct: 162 HEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLA 197
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 76/197 (38%), Gaps = 31/197 (15%)
Query: 69 TALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTM 128
+ LH A + C +IL+ GA + ++ + P+ +A + S +
Sbjct: 94 SPLHEACLGGHLSCVKILLKH------------GAQVNGVTADWHTPLFNACVSGSWDCV 141
Query: 129 EVFLQFGESIGCSREEMISLFDAEGNL--PLHSAVHGGDFKAVELCLKSGAKISTQQFDL 186
+ LQ G S+ E +L P+H A G + V + G I + L
Sbjct: 142 NLLLQHGASV-----------QPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHL 190
Query: 187 STPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDE 246
TP++LAC V+ + E +N Q +PLH ++ L+D
Sbjct: 191 GTPLYLACENQQRACVKKLL-----ESGADVNQGKGQD-SPLHAVVRTASEELACLLMDF 244
Query: 247 GADLNVLDKEKRSPLLL 263
GAD + E + P+ L
Sbjct: 245 GADTQAKNAEGKRPVEL 261
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 17/160 (10%)
Query: 458 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTL 517
+N A ++PLH A + V+ L+ GA +N + + +PL A G W V L
Sbjct: 85 VNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLL 144
Query: 518 VRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNE 577
+++ A++ + + + +H G H++ +LI G I+ K +
Sbjct: 145 LQHGASVQ-PESDLASPIHEAARRG--HVECV----------NSLIAYGGNIDHKISHLG 191
Query: 578 SPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLH 617
+PL+LA + VKKLL S +N+ G+ +PLH
Sbjct: 192 TPLYLACENQQRACVKKLLES---GADVNQGKGQD-SPLH 227
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 68/166 (40%), Gaps = 11/166 (6%)
Query: 217 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWK----- 271
+N A ++PLH A + V+ L+ GA +N + + +PL A G W
Sbjct: 85 VNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLL 144
Query: 272 -TNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYD 330
+G + + ++ + H A V + L+ Y ID H T L++A
Sbjct: 145 LQHGASVQPESDLASPI-HEAARRGHVECVNSLIAYGGNID--HKISHLGTPLYLACENQ 201
Query: 331 FDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFG 376
C + L++ GA + + P+H + AS + + + FG
Sbjct: 202 QRACVKKLLES-GADVNQG-KGQDSPLHAVVRTASEELACLLMDFG 245
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 63/279 (22%), Positives = 109/279 (39%), Gaps = 78/279 (27%)
Query: 226 TPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQ 285
+P+H AA+ ++ LI +G +N++ + SPL A G
Sbjct: 61 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGG----------------- 103
Query: 286 AVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGAS 345
HL+ + ILL++ ++ + H T L A + +C +L++ GAS
Sbjct: 104 ---HLSC-------VKILLKHGAQVNGVTADWH--TPLFNACVSGSWDCVNLLLQ-HGAS 150
Query: 346 LKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGG 405
++ S+ PIH+AA+ + + + +G +I + IS PL+ A
Sbjct: 151 VQPE-SDLASPIHEAARRGHVECVNSLIAYGGNI----DHKISHLGT----PLYLACENQ 201
Query: 406 DFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQK 465
V+ L+SGA ++ Q +P+H +VR SE+L CL
Sbjct: 202 QRACVKKLLESGADVN-QGKGQDSPLHA--------VVRTA-----SEELACL------- 240
Query: 466 MTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLL 504
L+D GAD + E + P+ L
Sbjct: 241 ------------------LMDFGADTQAKNAEGKRPVEL 261
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 84/171 (49%), Gaps = 17/171 (9%)
Query: 428 STPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDE 487
S +H +QG LD +L +L+ + LV N D + TPL A+ F + V++L++
Sbjct: 3 SLSIHQLAAQGELD--QLKEHLRKGDNLV--NKPDERGFTPLIWASAFGEIETVRFLLEW 58
Query: 488 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 547
GAD ++L KE+ S L LA++ G V L+ +I + D N LL G H+K
Sbjct: 59 GADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGT--PLLYAVHGNHVK 116
Query: 548 EFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSS 598
E L+ GA + + +S +P+ LA G Y V++++ +
Sbjct: 117 CV----------EALLARGADLTTEADSGYTPMDLAVALG-YRKVQQVIEN 156
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 4/82 (4%)
Query: 187 STPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDE 246
S +H +QG LD +L +L+ + LV N D + TPL A+ F + V++L++
Sbjct: 3 SLSIHQLAAQGELD--QLKEHLRKGDNLV--NKPDERGFTPLIWASAFGEIETVRFLLEW 58
Query: 247 GADLNVLDKEKRSPLLLAASRG 268
GAD ++L KE+ S L LA++ G
Sbjct: 59 GADPHILAKERESALSLASTGG 80
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 20/143 (13%)
Query: 65 EHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNAS 124
E G T L A+ + E R L+ + I+ K+ ++L A + GY I
Sbjct: 34 ERGFTPLIWASAFGEIETVRFLLEWGADPH-ILAKERESALSLASTGGYTDI-------- 84
Query: 125 SKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQF 184
+ + L+ R+ I+++D G PL AVHG K VE L GA ++T+
Sbjct: 85 ---VGLLLE--------RDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEAD 133
Query: 185 DLSTPVHLACSQGALDIVRLMFN 207
TP+ LA + G + +++ N
Sbjct: 134 SGYTPMDLAVALGYRKVQQVIEN 156
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 5/126 (3%)
Query: 143 EEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIV 202
+ +++ D G PL A G+ + V L+ GA + + + LA + G DIV
Sbjct: 26 DNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIV 85
Query: 203 RLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLL 262
L+ E+ V +N D TPL A + V+ L+ GADL +P+
Sbjct: 86 GLLL-----ERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMD 140
Query: 263 LAASRG 268
LA + G
Sbjct: 141 LAVALG 146
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 35/66 (53%)
Query: 383 REEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDI 442
R+ I+++ G PL AVHG K VE L GA ++T+ TP+ LA + G +
Sbjct: 91 RDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKV 150
Query: 443 VRLMFN 448
+++ N
Sbjct: 151 QQVIEN 156
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 27/131 (20%), Positives = 56/131 (42%), Gaps = 6/131 (4%)
Query: 395 NLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLS-TPVHLACSQGALDIVRLMFNLQPSE 453
+L +H G+ ++ L+ G + + + TP+ A + G ++ VR +
Sbjct: 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP 62
Query: 454 KLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKT 513
++ ++ + L A+ D+V L++ D+N+ D +PLL A K
Sbjct: 63 HILA-----KERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKC 117
Query: 514 VLTLVRNKANI 524
V L+ A++
Sbjct: 118 VEALLARGADL 128
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/112 (20%), Positives = 49/112 (43%), Gaps = 6/112 (5%)
Query: 154 NLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLS-TPVHLACSQGALDIVRLMFNLQPSE 212
+L +H G+ ++ L+ G + + + TP+ A + G ++ VR +
Sbjct: 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP 62
Query: 213 KLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLA 264
++ ++ + L A+ D+V L++ D+N+ D +PLL A
Sbjct: 63 HILA-----KERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYA 109
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 84/171 (49%), Gaps = 17/171 (9%)
Query: 428 STPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDE 487
S +H +QG LD +L +L+ + LV N D + TPL A+ F + V++L++
Sbjct: 3 SLSIHQLAAQGELD--QLKEHLRKGDNLV--NKPDERGFTPLIWASAFGEIETVRFLLEW 58
Query: 488 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 547
GAD ++L KE+ S L LA++ G V L+ +I + D N L V G H+K
Sbjct: 59 GADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVR--GNHVK 116
Query: 548 EFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSS 598
E L+ GA + + +S +P+ LA G Y V++++ +
Sbjct: 117 CV----------EALLARGADLTTEADSGYTPMDLAVALG-YRKVQQVIEN 156
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 4/82 (4%)
Query: 187 STPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDE 246
S +H +QG LD +L +L+ + LV N D + TPL A+ F + V++L++
Sbjct: 3 SLSIHQLAAQGELD--QLKEHLRKGDNLV--NKPDERGFTPLIWASAFGEIETVRFLLEW 58
Query: 247 GADLNVLDKEKRSPLLLAASRG 268
GAD ++L KE+ S L LA++ G
Sbjct: 59 GADPHILAKERESALSLASTGG 80
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 5/126 (3%)
Query: 143 EEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIV 202
+ +++ D G PL A G+ + V L+ GA + + + LA + G DIV
Sbjct: 26 DNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIV 85
Query: 203 RLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLL 262
L+ E+ V +N D TPL A + V+ L+ GADL +P+
Sbjct: 86 GLLL-----ERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMD 140
Query: 263 LAASRG 268
LA + G
Sbjct: 141 LAVALG 146
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 27/131 (20%), Positives = 56/131 (42%), Gaps = 6/131 (4%)
Query: 395 NLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLS-TPVHLACSQGALDIVRLMFNLQPSE 453
+L +H G+ ++ L+ G + + + TP+ A + G ++ VR +
Sbjct: 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP 62
Query: 454 KLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKT 513
++ ++ + L A+ D+V L++ D+N+ D +PLL A K
Sbjct: 63 HILA-----KERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKC 117
Query: 514 VLTLVRNKANI 524
V L+ A++
Sbjct: 118 VEALLARGADL 128
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 153 GNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSE 212
G PLH A G F E+ L++G + TP+H+A S+G +IV ++
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGAD- 92
Query: 213 KLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDK 255
+N+ D KMT LH A + +VV+ LI GAD++ K
Sbjct: 93 ----VNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSK 131
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 394 GNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSE 453
G PLH A G F E+ L++G + TP+H+A S+G +IV ++
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGAD- 92
Query: 454 KLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDK 496
+N+ D KMT LH A + +VV+ LI GAD++ K
Sbjct: 93 ----VNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSK 131
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 51/112 (45%), Gaps = 8/112 (7%)
Query: 426 DLSTPVHLACSQGALDIVR-LMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYL 484
DL + A G D VR LM N P +TD +PLH AA + + L
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAPF-------TTDWLGTSPLHLAAQYGHFSTTEVL 53
Query: 485 IDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILH 536
+ G + K R+PL +AAS G V L+++ A++ KD+ + LH
Sbjct: 54 LRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALH 105
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 55/129 (42%), Gaps = 14/129 (10%)
Query: 185 DLSTPVHLACSQGALDIVR-LMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYL 243
DL + A G D VR LM N P +TD +PLH AA + + L
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAPF-------TTDWLGTSPLHLAAQYGHFSTTEVL 53
Query: 244 IDEGADLNVLDKEKRSPLLLAASRGGWK------TNGVNTRILNNKKQAVLHLATELNKV 297
+ G + K R+PL +AAS G +G + + K LH ATE N
Sbjct: 54 LRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQ 113
Query: 298 PILLILLQY 306
++ +L++Y
Sbjct: 114 EVVELLIKY 122
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 6/124 (4%)
Query: 401 AVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNS 460
A G V + + +GA +T S P+HLA G ++ V ++
Sbjct: 9 AARAGQDDEVRILMANGAPFTTDWLGTS-PLHLAAQYGHFSTTEVLLRAG-----VSRDA 62
Query: 461 TDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRN 520
TPLH AA ++V+ L+ GAD+N D K + L A + V L++
Sbjct: 63 RTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKY 122
Query: 521 KANI 524
A++
Sbjct: 123 GADV 126
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 578 SPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
SPLHLAA+YG ++T + LL R + TPLH+A+ EG
Sbjct: 36 SPLHLAAQYGHFSTTEVLL---RAGVSRDARTKVDRTPLHMAASEG 78
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 53/139 (38%), Gaps = 20/139 (14%)
Query: 67 GRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSK 126
G + LH+AA Y +L+ G S P+H AA +
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLRA------------GVSRDARTKVDRTPLHMAASEGHAN 81
Query: 127 TMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDL 186
+EV L+ G + ++M+ + LH A + VEL +K GA + TQ
Sbjct: 82 IVEVLLKHGADVNA--KDMLKM------TALHWATEHNHQEVVELLIKYGADVHTQSKFC 133
Query: 187 STPVHLACSQGALDIVRLM 205
T ++ G D+ ++
Sbjct: 134 KTAFDISIDNGNEDLAEIL 152
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 560 ENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIA 619
E L+ G + + + +PLH+AA G N V+ LL + +N D +T LH A
Sbjct: 51 EVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLL---KHGADVNAKDMLKMTALHWA 107
Query: 620 SKEGFHYSVSIF 631
++ V +
Sbjct: 108 TEHNHQEVVELL 119
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 101/233 (43%), Gaps = 35/233 (15%)
Query: 354 YYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELC 413
+ P+H+AA + ++ + G ++ ++ A+ PLH A GG V++
Sbjct: 4 WSPMHEAAIHGHQLSLRNLISQGWAV--------NIITADHVSPLHEACLGGHLSCVKIL 55
Query: 414 LKSGAKISTQQFDLSTPVHLACSQGALDIVRLMF----NLQPSEKLVCLNSTDAQKMTPL 469
LK GA+++ D TP+ AC G+ D V L+ ++QP L +P+
Sbjct: 56 LKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA----------SPI 105
Query: 470 HCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDI 529
H AA + V LI G +++ +PL LA V L+ + A++ +
Sbjct: 106 HEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADV-NQGK 164
Query: 530 NRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHL 582
+ + LH + + +EE+A + L++ GA KN + P+ L
Sbjct: 165 GQDSPLHAVA-------RTASEELACL-----LMDFGADTQAKNAEGKRPVEL 205
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 69/156 (44%), Gaps = 22/156 (14%)
Query: 113 YYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELC 172
+ P+H+AA + ++ + G ++ + +S PLH A GG V++
Sbjct: 4 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVS--------PLHEACLGGHLSCVKIL 55
Query: 173 LKSGAKISTQQFDLSTPVHLACSQGALDIVRLMF----NLQPSEKLVCLNSTDAQKMTPL 228
LK GA+++ D TP+ AC G+ D V L+ ++QP L +P+
Sbjct: 56 LKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA----------SPI 105
Query: 229 HCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLA 264
H AA + V LI G +++ +PL LA
Sbjct: 106 HEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLA 141
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 77/197 (39%), Gaps = 31/197 (15%)
Query: 69 TALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTM 128
+ LH A + C +IL+ GA + ++ + P+ +A + S +
Sbjct: 38 SPLHEACLGGHLSCVKILLKH------------GAQVNGVTADWHTPLFNACVSGSWDCV 85
Query: 129 EVFLQFGESIGCSREEMISLFDAEGNL--PLHSAVHGGDFKAVELCLKSGAKISTQQFDL 186
+ LQ G S+ E +L P+H A G + V + G I + L
Sbjct: 86 NLLLQHGASV-----------QPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHL 134
Query: 187 STPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDE 246
TP++LAC V+ + E +N Q +PLH A ++ L+D
Sbjct: 135 GTPLYLACENQQRACVKKLL-----ESGADVNQGKGQD-SPLHAVARTASEELACLLMDF 188
Query: 247 GADLNVLDKEKRSPLLL 263
GAD + E + P+ L
Sbjct: 189 GADTQAKNAEGKRPVEL 205
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 72/164 (43%), Gaps = 17/164 (10%)
Query: 458 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTL 517
+N A ++PLH A + V+ L+ GA +N + + +PL A G W V L
Sbjct: 29 VNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLL 88
Query: 518 VRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNE 577
+++ A++ + + I E A V +LI G I+ K +
Sbjct: 89 LQHGASVQPES------------DLASPIHEAARR-GHVECVNSLIAYGGNIDHKISHLG 135
Query: 578 SPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASK 621
+PL+LA + VKKLL S +N+ G+ +PLH ++
Sbjct: 136 TPLYLACENQQRACVKKLLES---GADVNQGKGQD-SPLHAVAR 175
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 69/166 (41%), Gaps = 11/166 (6%)
Query: 217 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWK----- 271
+N A ++PLH A + V+ L+ GA +N + + +PL A G W
Sbjct: 29 VNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLL 88
Query: 272 -TNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYD 330
+G + + ++ + H A V + L+ Y ID H T L++A
Sbjct: 89 LQHGASVQPESDLASPI-HEAARRGHVECVNSLIAYGGNID--HKISHLGTPLYLACENQ 145
Query: 331 FDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFG 376
C + L++ GA + + P+H A+ AS + + + FG
Sbjct: 146 QRACVKKLLES-GADVNQG-KGQDSPLHAVARTASEELACLLMDFG 189
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 49/224 (21%), Positives = 94/224 (41%), Gaps = 40/224 (17%)
Query: 226 TPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQ 285
+P+H AA+ ++ LI +G +N++ + SPL A G
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGG----------------- 47
Query: 286 AVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGAS 345
HL+ + ILL++ ++ + H T L A + +C +L++ GAS
Sbjct: 48 ---HLSC-------VKILLKHGAQVNGVTADWH--TPLFNACVSGSWDCVNLLLQ-HGAS 94
Query: 346 LKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGG 405
++ S+ PIH+AA+ + + + +G +I + IS PL+ A
Sbjct: 95 VQPE-SDLASPIHEAARRGHVECVNSLIAYGGNI----DHKISHLGT----PLYLACENQ 145
Query: 406 DFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNL 449
V+ L+SGA ++ Q +P+H + ++ L+ +
Sbjct: 146 QRACVKKLLESGADVN-QGKGQDSPLHAVARTASEELACLLMDF 188
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 81/192 (42%), Gaps = 26/192 (13%)
Query: 459 NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLV 518
N TD T LH AA + R D + L++ AD + D R+PL A S L+
Sbjct: 16 NQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILL 75
Query: 519 RNKANIL---LKDINRRNILHL-LVLNG--GGHIKEFAEEVAAVFLGEN----------- 561
RN+A L + D IL L L G I A+ A LG++
Sbjct: 76 RNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNV 135
Query: 562 -----LINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPL 616
L+ GA +++NN E+PL LAAR G Y T K LL I + D P
Sbjct: 136 DAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDR---LPR 192
Query: 617 HIASKEGFHYSV 628
IA +E H+ +
Sbjct: 193 DIA-QERMHHDI 203
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 20/168 (11%)
Query: 218 NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNT 277
N TD T LH AA + R D + L++ AD + D R+PL A S GV
Sbjct: 16 NQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVS---ADAQGVFQ 72
Query: 278 RILNNKK---QAVLHLATELNKVPILL---ILLQ--YKDMI----DILQGGEHGRTALHI 325
+L N+ A +H T P++L + L+ +D+I D+ + G++ALH
Sbjct: 73 ILLRNRATDLDARMHDGT----TPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHW 128
Query: 326 AAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFL 373
AA + + A +L+K+ GA+ + P+ AA+ S +T +V L
Sbjct: 129 AAAVNNVDAAVVLLKN-GANKDMQNNKEETPLFLAAREGSYETAKVLL 175
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 87/196 (44%), Gaps = 18/196 (9%)
Query: 338 LVKDF---GASLKRACS-NGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAE 393
++ DF GASL G +H AA+ + S + L+ + ++ M
Sbjct: 3 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLE-ASADAXIQDNM------- 54
Query: 394 GNLPLHSAVHGGDFKAVELCLKSGA-KISTQQFDLSTPVHLACSQGALDIVRLMFNLQPS 452
G PLH+AV ++ L++ A + + D +TP+ LA ++ + N
Sbjct: 55 GRTPLHAAVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHAD 114
Query: 453 EKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWK 512
+N+ D + LH AA + D L+ GA+ ++ + ++ +PL LAA G ++
Sbjct: 115 -----VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYE 169
Query: 513 TVLTLVRNKANILLKD 528
T L+ + AN + D
Sbjct: 170 TAKVLLDHFANRDITD 185
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 18/184 (9%)
Query: 97 MVKDF---GASLKRACS-NGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAE 152
++ DF GASL G +H AA+ + S + L+ S + I D
Sbjct: 3 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLE------ASADAXIQ--DNM 54
Query: 153 GNLPLHSAVHGGDFKAVELCLKSGA-KISTQQFDLSTPVHLACSQGALDIVRLMFNLQPS 211
G PLH+AV ++ L++ A + + D +TP+ LA ++ + N
Sbjct: 55 GRTPLHAAVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHAD 114
Query: 212 EKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWK 271
+N+ D + LH AA + D L+ GA+ ++ + ++ +PL LAA G ++
Sbjct: 115 -----VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYE 169
Query: 272 TNGV 275
T V
Sbjct: 170 TAKV 173
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 72/171 (42%), Gaps = 13/171 (7%)
Query: 150 DAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQ 209
D G LH A A + L++ A Q TP+H A S A + +++ +
Sbjct: 19 DRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNR 78
Query: 210 PSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGG 269
++ L++ TPL AA +++ LI+ AD+N +D +S L AA+
Sbjct: 79 ATD----LDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 134
Query: 270 WKT------NGVNTRILNNKKQAVLHLATELNKVPILLILLQY---KDMID 311
NG N + NNK++ L LA +LL + +D+ D
Sbjct: 135 VDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITD 185
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 65/135 (48%), Gaps = 10/135 (7%)
Query: 397 PLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLV 456
PLH A G VE+ + GA+I+ TP+HLA S G DIV+ + +
Sbjct: 37 PLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKAD---- 92
Query: 457 CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLT 516
+N+ + PLH A + + V + L+ GA +++ +K P+ A + +
Sbjct: 93 -INAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKA-----PLRE 146
Query: 517 LVRNKANILLKDINR 531
L+R +A + +++NR
Sbjct: 147 LLRERAEKMGQNLNR 161
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 75/187 (40%), Gaps = 38/187 (20%)
Query: 194 CSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVL 253
C +G VRL + ++ LN D +PLH A R VV+ LI GA +NV+
Sbjct: 8 CREGNAVAVRLWLDNTEND----LNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM 63
Query: 254 DKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDIL 313
++ +PL LAAS G I+ LLQYK DI
Sbjct: 64 NRGDDTPLHLAASHG---------------------------HRDIVQKLLQYK--ADIN 94
Query: 314 QGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFL 373
EHG LH A + D+ A LV + GA + G P+ A + E+
Sbjct: 95 AVNEHGNVPLHYACFWGQDQVAEDLVAN-GALVSICNKYGEMPV----DKAKAPLRELLR 149
Query: 374 QFGESIG 380
+ E +G
Sbjct: 150 ERAEKMG 156
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 150 DAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQ 209
D G PLH A G VE+ + GA+I+ TP+HLA S G DIV+ + +
Sbjct: 31 DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYK 90
Query: 210 PSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPL 261
+N+ + PLH A + + V + L+ GA +++ +K P+
Sbjct: 91 AD-----INAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPV 137
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 70/149 (46%), Gaps = 16/149 (10%)
Query: 435 CSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVL 494
C +G VRL + ++ LN D +PLH A R VV+ LI GA +NV+
Sbjct: 8 CREGNAVAVRLWLDNTEND----LNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM 63
Query: 495 DKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVA 554
++ +PL LAAS G V L++ KA+I + + LH G ++VA
Sbjct: 64 NRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWG-------QDQVA 116
Query: 555 AVFLGENLINLGACINLKNNSNESPLHLA 583
E+L+ GA +++ N E P+ A
Sbjct: 117 -----EDLVANGALVSICNKYGEMPVDKA 140
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 560 ENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIA 619
E LI GA IN+ N +++PLHLAA +G + V+KLL + +NE G PLH A
Sbjct: 51 EMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNE---HGNVPLHYA 107
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 22 GVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDE 81
G ++N LHLA I+ LLQYK DI EHG LH A + D+
Sbjct: 57 GARINVMNRGDDTPLHLAASHGHRDIVQKLLQYK--ADINAVNEHGNVPLHYACFWGQDQ 114
Query: 82 CARILVS 88
A LV+
Sbjct: 115 VAEDLVA 121
Score = 35.4 bits (80), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 8/103 (7%)
Query: 336 RILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGN 395
R+ + + L + +G+ P+H A + S +E+ + G I ++ +
Sbjct: 17 RLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI--------NVMNRGDD 68
Query: 396 LPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQG 438
PLH A G V+ L+ A I+ + P+H AC G
Sbjct: 69 TPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWG 111
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 8/94 (8%)
Query: 104 SLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHG 163
L + +G+ P+H A + S +E+ + G I ++ + + PLH A
Sbjct: 26 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI--------NVMNRGDDTPLHLAASH 77
Query: 164 GDFKAVELCLKSGAKISTQQFDLSTPVHLACSQG 197
G V+ L+ A I+ + P+H AC G
Sbjct: 78 GHRDIVQKLLQYKADINAVNEHGNVPLHYACFWG 111
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 54/140 (38%), Gaps = 22/140 (15%)
Query: 41 ELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKD 100
E N V + L L ++ D+ QG +HG + LH A +L+
Sbjct: 10 EGNAVAVRLWLDNTEN--DLNQGDDHGFSPLHWACREGRSAVVEMLIMR----------- 56
Query: 101 FGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSA 160
GA + P+H AA + ++ LQ+ I E GN+PLH A
Sbjct: 57 -GARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEH--------GNVPLHYA 107
Query: 161 VHGGDFKAVELCLKSGAKIS 180
G + E + +GA +S
Sbjct: 108 CFWGQDQVAEDLVANGALVS 127
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 65/135 (48%), Gaps = 10/135 (7%)
Query: 397 PLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLV 456
PLH A G VE+ + GA+I+ TP+HLA S G DIV+ + +
Sbjct: 42 PLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKAD---- 97
Query: 457 CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLT 516
+N+ + PLH A + + V + L+ GA +++ +K P+ A + +
Sbjct: 98 -INAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKA-----PLRE 151
Query: 517 LVRNKANILLKDINR 531
L+R +A + +++NR
Sbjct: 152 LLRERAEKMGQNLNR 166
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 77/187 (41%), Gaps = 38/187 (20%)
Query: 194 CSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVL 253
C +G VRL + ++ LN D +PLH A R VV+ LI GA +NV+
Sbjct: 13 CREGNAVAVRLWLDNTEND----LNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM 68
Query: 254 DKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDIL 313
++ +PL LAAS G I+ LLQYK DI
Sbjct: 69 NRGDDTPLHLAASHG---------------------------HRDIVQKLLQYK--ADIN 99
Query: 314 QGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFL 373
EHG LH A + D+ A LV + GA + G P+ D AK + E+
Sbjct: 100 AVNEHGNVPLHYACFWGQDQVAEDLVAN-GALVSICNKYGEMPV-DKAK---APLRELLR 154
Query: 374 QFGESIG 380
+ E +G
Sbjct: 155 ERAEKMG 161
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 150 DAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQ 209
D G PLH A G VE+ + GA+I+ TP+HLA S G DIV+ + +
Sbjct: 36 DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYK 95
Query: 210 PSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPL 261
+N+ + PLH A + + V + L+ GA +++ +K P+
Sbjct: 96 AD-----INAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPV 142
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 70/149 (46%), Gaps = 16/149 (10%)
Query: 435 CSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVL 494
C +G VRL + ++ LN D +PLH A R VV+ LI GA +NV+
Sbjct: 13 CREGNAVAVRLWLDNTEND----LNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM 68
Query: 495 DKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVA 554
++ +PL LAAS G V L++ KA+I + + LH G ++VA
Sbjct: 69 NRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWG-------QDQVA 121
Query: 555 AVFLGENLINLGACINLKNNSNESPLHLA 583
E+L+ GA +++ N E P+ A
Sbjct: 122 -----EDLVANGALVSICNKYGEMPVDKA 145
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 560 ENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIA 619
E LI GA IN+ N +++PLHLAA +G + V+KLL + +NE G PLH A
Sbjct: 56 EMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNE---HGNVPLHYA 112
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 22 GVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDE 81
G ++N LHLA I+ LLQYK DI EHG LH A + D+
Sbjct: 62 GARINVMNRGDDTPLHLAASHGHRDIVQKLLQYK--ADINAVNEHGNVPLHYACFWGQDQ 119
Query: 82 CARILVS 88
A LV+
Sbjct: 120 VAEDLVA 126
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 54/140 (38%), Gaps = 22/140 (15%)
Query: 41 ELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKD 100
E N V + L L ++ D+ QG +HG + LH A +L+
Sbjct: 15 EGNAVAVRLWLDNTEN--DLNQGDDHGFSPLHWACREGRSAVVEMLIMR----------- 61
Query: 101 FGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSA 160
GA + P+H AA + ++ LQ+ I E GN+PLH A
Sbjct: 62 -GARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEH--------GNVPLHYA 112
Query: 161 VHGGDFKAVELCLKSGAKIS 180
G + E + +GA +S
Sbjct: 113 CFWGQDQVAEDLVANGALVS 132
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 8/103 (7%)
Query: 336 RILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGN 395
R+ + + L + +G+ P+H A + S +E+ + G I ++ +
Sbjct: 22 RLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI--------NVMNRGDD 73
Query: 396 LPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQG 438
PLH A G V+ L+ A I+ + P+H AC G
Sbjct: 74 TPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWG 116
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 8/94 (8%)
Query: 104 SLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHG 163
L + +G+ P+H A + S +E+ + G I ++ + + PLH A
Sbjct: 31 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI--------NVMNRGDDTPLHLAASH 82
Query: 164 GDFKAVELCLKSGAKISTQQFDLSTPVHLACSQG 197
G V+ L+ A I+ + P+H AC G
Sbjct: 83 GHRDIVQKLLQYKADINAVNEHGNVPLHYACFWG 116
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 5/112 (4%)
Query: 157 LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC 216
L A G V + + +GA ++ TP+HLA +G L+IV ++
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD----- 72
Query: 217 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
+N++D+ TPLH AA ++V+ L++ GAD+N DK ++ ++ G
Sbjct: 73 VNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNG 124
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 5/112 (4%)
Query: 398 LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC 457
L A G V + + +GA ++ TP+HLA +G L+IV ++
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD----- 72
Query: 458 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 509
+N++D+ TPLH AA ++V+ L++ GAD+N DK ++ ++ G
Sbjct: 73 VNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNG 124
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 5/128 (3%)
Query: 426 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 485
DL + A G D VR++ +N+ D +TPLH AA ++V+ L+
Sbjct: 13 DLGKKLLEATRAGQDDEVRILM-----ANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLL 67
Query: 486 DEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGH 545
GAD+N D R+PL LAA+ G + V L+ A++ +D + + + NG
Sbjct: 68 KHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNED 127
Query: 546 IKEFAEEV 553
+ E +++
Sbjct: 128 LAEILQKL 135
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 9/118 (7%)
Query: 332 DECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFA 391
D+ RIL+ + GA + G P+H AAK + +EV L+ G + S
Sbjct: 27 DDEVRILMAN-GADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD-------- 77
Query: 392 AEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNL 449
+ G PLH A G + VE+ L+ GA ++ Q T ++ G D+ ++ L
Sbjct: 78 SWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 8/107 (7%)
Query: 102 GASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAV 161
GA + G P+H AAK + +EV L+ G + S D+ G PLH A
Sbjct: 37 GADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS--------DSWGRTPLHLAA 88
Query: 162 HGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNL 208
G + VE+ L+ GA ++ Q T ++ G D+ ++ L
Sbjct: 89 TVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 55/138 (39%), Gaps = 30/138 (21%)
Query: 238 DVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKV 297
D V+ L+ GAD+N +D +PL LAA RG HL
Sbjct: 28 DEVRILMANGADVNAMDDAGVTPLHLAAKRG--------------------HL------- 60
Query: 298 PILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPI 357
I+ +LL++ D+ GRT LH+AA E +L++ +GA + G
Sbjct: 61 EIVEVLLKHG--ADVNASDSWGRTPLHLAATVGHLEIVEVLLE-YGADVNAQDKFGKTAF 117
Query: 358 HDAAKNASSKTMEVFLQF 375
+ N + E+ +
Sbjct: 118 DISIDNGNEDLAEILQKL 135
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 5/110 (4%)
Query: 159 SAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLN 218
A G V + + +GA ++ +TP+HLA L+IV ++ + +N
Sbjct: 20 EAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLL-----KHGADVN 74
Query: 219 STDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
+ D TPLH AA+F ++V+ L+ GAD+N DK ++ ++ G
Sbjct: 75 AHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNG 124
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 5/110 (4%)
Query: 400 SAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLN 459
A G V + + +GA ++ +TP+HLA L+IV ++ + +N
Sbjct: 20 EAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLL-----KHGADVN 74
Query: 460 STDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 509
+ D TPLH AA+F ++V+ L+ GAD+N DK ++ ++ G
Sbjct: 75 AHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNG 124
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 64/128 (50%), Gaps = 5/128 (3%)
Query: 426 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 485
DL + A G D VR++ +N+ D + TPLH AA +D ++V+ L+
Sbjct: 13 DLGKKLLEAARAGQDDEVRILM-----ANGADVNANDRKGNTPLHLAADYDHLEIVEVLL 67
Query: 486 DEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGH 545
GAD+N D + +PL LAA G + V L+++ A++ +D + + + NG
Sbjct: 68 KHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 127
Query: 546 IKEFAEEV 553
+ E +++
Sbjct: 128 LAEILQKL 135
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 118 DAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGA 177
+AA+ + + + G + + D +GN PLH A + VE+ LK GA
Sbjct: 20 EAARAGQDDEVRILMANGADVNAN--------DRKGNTPLHLAADYDHLEIVEVLLKHGA 71
Query: 178 KISTQQFDLSTPVHLACSQGALDIVRLMF 206
++ D STP+HLA G L+IV ++
Sbjct: 72 DVNAHDNDGSTPLHLAALFGHLEIVEVLL 100
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 32/55 (58%)
Query: 393 EGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMF 447
+GN PLH A + VE+ LK GA ++ D STP+HLA G L+IV ++
Sbjct: 46 KGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLL 100
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 319 GRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGES 378
G T LH+AA YD E +L+K GA + ++G P+H AA + +EV L+ G
Sbjct: 47 GNTPLHLAADYDHLEIVEVLLK-HGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGAD 105
Query: 379 IGC 381
+
Sbjct: 106 VNA 108
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 53/131 (40%), Gaps = 15/131 (11%)
Query: 502 LLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEN 561
LL AA G V L+ N A++ D LHL A + + + E
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDRKGNTPLHL------------AADYDHLEIVEV 65
Query: 562 LINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASK 621
L+ GA +N +N +PLHLAA +G V+ LL + +N D G T I+
Sbjct: 66 LLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLL---KHGADVNAQDKFGKTAFDISID 122
Query: 622 EGFHYSVSIFQ 632
G I Q
Sbjct: 123 NGNEDLAEILQ 133
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 262 LLAASRGGWK-------TNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQ 314
LL A+R G NG + + K LHLA + + + I+ +LL++ D+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHG--ADVNA 75
Query: 315 GGEHGRTALHIAAIYDFDECARILVK 340
G T LH+AA++ E +L+K
Sbjct: 76 HDNDGSTPLHLAALFGHLEIVEVLLK 101
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 12/84 (14%)
Query: 67 GRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSK 126
G T LH+AA YD E +L+ GA + ++G P+H AA +
Sbjct: 47 GNTPLHLAADYDHLEIVEVLLK------------HGADVNAHDNDGSTPLHLAALFGHLE 94
Query: 127 TMEVFLQFGESIGCSREEMISLFD 150
+EV L+ G + + + FD
Sbjct: 95 IVEVLLKHGADVNAQDKFGKTAFD 118
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 20 SSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDF 79
++G + + K LHLA + + + I+ +LL++ D+ G T LH+AA++
Sbjct: 35 ANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHG--ADVNAHDNDGSTPLHLAALFGH 92
Query: 80 DECARILVSEQPECD 94
E +L+ + +
Sbjct: 93 LEIVEVLLKHGADVN 107
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 5/109 (4%)
Query: 160 AVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNS 219
A G V + +GA ++ + TP+HLA G L+IV ++ + +N+
Sbjct: 21 AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLL-----KNGADVNA 75
Query: 220 TDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
T TPLH AA D ++V+ L+ GAD+N DK ++ ++ G
Sbjct: 76 TGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNG 124
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 5/109 (4%)
Query: 401 AVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNS 460
A G V + +GA ++ + TP+HLA G L+IV ++ + +N+
Sbjct: 21 AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLL-----KNGADVNA 75
Query: 461 TDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 509
T TPLH AA D ++V+ L+ GAD+N DK ++ ++ G
Sbjct: 76 TGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNG 124
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 61/128 (47%), Gaps = 5/128 (3%)
Query: 426 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 485
DL + A G D VR++ + +N+ D TPLH AAM ++V+ L+
Sbjct: 13 DLGKKLLEAARAGQDDEVRIL-----TANGADVNANDYWGHTPLHLAAMLGHLEIVEVLL 67
Query: 486 DEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGH 545
GAD+N R+PL LAA + V L+++ A++ +D + + + NG
Sbjct: 68 KNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 127
Query: 546 IKEFAEEV 553
+ E +++
Sbjct: 128 LAEILQKL 135
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 63/156 (40%), Gaps = 34/156 (21%)
Query: 185 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 244
DL + A G D VR++ + +N+ D TPLH AAM ++V+ L+
Sbjct: 13 DLGKKLLEAARAGQDDEVRIL-----TANGADVNANDYWGHTPLHLAAMLGHLEIVEVLL 67
Query: 245 DEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILL 304
GAD+N N + LHLA + + I+ +LL
Sbjct: 68 KNGADVNAT---------------------------GNTGRTPLHLAAWADHLEIVEVLL 100
Query: 305 QYKDMIDILQGGEHGRTALHIAAIYDFDECARILVK 340
++ D+ + G+TA I+ ++ A IL K
Sbjct: 101 KHG--ADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%)
Query: 150 DAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMF 206
D G+ PLH A G + VE+ LK+GA ++ TP+HLA L+IV ++
Sbjct: 44 DYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLL 100
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%)
Query: 394 GNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMF 447
G+ PLH A G + VE+ LK+GA ++ TP+HLA L+IV ++
Sbjct: 47 GHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLL 100
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 319 GRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGES 378
G T LH+AA+ E +L+K+ GA + + G P+H AA + +EV L+ G
Sbjct: 47 GHTPLHLAAMLGHLEIVEVLLKN-GADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGAD 105
Query: 379 I 379
+
Sbjct: 106 V 106
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 36 LHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECD 94
LHLA L + I+ +LL K+ D+ G GRT LH+AA D E +L+ + +
Sbjct: 51 LHLAAMLGHLEIVEVLL--KNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVN 107
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 51/131 (38%), Gaps = 15/131 (11%)
Query: 502 LLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEN 561
LL AA G V L N A++ D LHL + G H+ E+ V L
Sbjct: 18 LLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLG--HL-----EIVEVLLKN- 69
Query: 562 LINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASK 621
GA +N N+ +PLHLAA V+ LL + +N D G T I+
Sbjct: 70 ----GADVNATGNTGRTPLHLAAWADHLEIVEVLL---KHGADVNAQDKFGKTAFDISID 122
Query: 622 EGFHYSVSIFQ 632
G I Q
Sbjct: 123 NGNEDLAEILQ 133
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 5/98 (5%)
Query: 157 LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC 216
LH A GD +VE L++G+ + + TP+H AC+ G L +V L+ +
Sbjct: 14 LHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLL-----QHKAL 68
Query: 217 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLD 254
+N+T Q +PLH AA D+V+ L+ GA N ++
Sbjct: 69 VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVN 106
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 5/98 (5%)
Query: 398 LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC 457
LH A GD +VE L++G+ + + TP+H AC+ G L +V L+ +
Sbjct: 14 LHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLL-----QHKAL 68
Query: 458 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLD 495
+N+T Q +PLH AA D+V+ L+ GA N ++
Sbjct: 69 VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVN 106
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 14/119 (11%)
Query: 116 IHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKS 175
+H A+ ++E LQ G D G PLH A + G K VEL L+
Sbjct: 14 LHIASIKGDIPSVEYLLQNGSDPNVK--------DHAGWTPLHEACNHGHLKVVELLLQH 65
Query: 176 GAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCL------NSTDAQKMTPL 228
A ++T + +P+H A G +DIV+L+ + S V + + TD + M L
Sbjct: 66 KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSL 124
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 394 GNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSE 453
G PLH A + G K VEL L+ A ++T + +P+H A G +DIV+L+ + S
Sbjct: 43 GWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASR 102
Query: 454 KLVCL------NSTDAQKMTPL 469
V + + TD + M L
Sbjct: 103 NAVNIFGLRPVDYTDDESMKSL 124
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 52/137 (37%), Gaps = 45/137 (32%)
Query: 461 TDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRN 520
T+ + T LH A++ V+YL+ G+D NV D +PL A + G K V L+++
Sbjct: 6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH 65
Query: 521 KANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPL 580
K A +N N+SPL
Sbjct: 66 K---------------------------------------------ALVNTTGYQNDSPL 80
Query: 581 HLAARYGRYNTVKKLLS 597
H AA+ G + VK LLS
Sbjct: 81 HDAAKNGHVDIVKLLLS 97
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 67/163 (41%), Gaps = 31/163 (19%)
Query: 220 TDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRI 279
T+ + T LH A++ V+YL+ G+D NV D +PL A + G K
Sbjct: 6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLK-------- 57
Query: 280 LNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILV 339
++ +LLQ+K +++ G + LH AA + ++L+
Sbjct: 58 -------------------VVELLLQHKALVNTT--GYQNDSPLHDAAKNGHVDIVKLLL 96
Query: 340 KDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCS 382
+GAS G P+ D + S K++ + + ES S
Sbjct: 97 S-YGASRNAVNIFGLRPV-DYTDDESMKSLLLLPEKNESSSAS 137
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 42/102 (41%), Gaps = 10/102 (9%)
Query: 429 TPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEG 488
T +H+A +G DI + + LQ N D TPLH A VV+ L+
Sbjct: 12 TLLHIASIKG--DIPSVEYLLQNGSDP---NVKDHAGWTPLHEACNHGHLKVVELLLQHK 66
Query: 489 ADLNVLDKEKRSPLLLAASRGGWKTVLTLV-----RNKANIL 525
A +N + SPL AA G V L+ RN NI
Sbjct: 67 ALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIF 108
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 14/109 (12%)
Query: 29 NNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVS 88
N++ + +LH+A+ +P + LLQ ++ G T LH A + + +L+
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHA--GWTPLHEACNHGHLKVVELLLQ 64
Query: 89 EQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGES 137
+ A + P+HDAAKN +++ L +G S
Sbjct: 65 HK------------ALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGAS 101
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 5/112 (4%)
Query: 157 LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC 216
L A G V + + +GA ++ D TP+HLA G L+IV ++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGAD----- 72
Query: 217 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
+N+ D +TPLH AA+ ++V+ L+ GAD+N DK ++ ++ G
Sbjct: 73 VNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNG 124
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 5/112 (4%)
Query: 398 LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC 457
L A G V + + +GA ++ D TP+HLA G L+IV ++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGAD----- 72
Query: 458 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 509
+N+ D +TPLH AA+ ++V+ L+ GAD+N DK ++ ++ G
Sbjct: 73 VNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNG 124
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 5/128 (3%)
Query: 426 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 485
DL + A G D VR++ +N+ D +TPLH AA ++V+ L+
Sbjct: 13 DLGKKLLEAARAGQDDEVRILM-----ANGADVNALDEDGLTPLHLAAQLGHLEIVEVLL 67
Query: 486 DEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGH 545
GAD+N D +PL LAA RG + V L+++ A++ +D + + + NG
Sbjct: 68 KYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 127
Query: 546 IKEFAEEV 553
+ E +++
Sbjct: 128 LAEILQKL 135
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%)
Query: 146 ISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLM 205
++ D +G PLH A G + VE+ LK GA ++ + TP+HLA +G L+IV ++
Sbjct: 40 VNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVL 99
Query: 206 F 206
Sbjct: 100 L 100
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 359 DAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGA 418
+AA+ + + + G + E+ ++ PLH A G + VE+ LK GA
Sbjct: 20 EAARAGQDDEVRILMANGADVNALDEDGLT--------PLHLAAQLGHLEIVEVLLKYGA 71
Query: 419 KISTQQFDLSTPVHLACSQGALDIVRLMF 447
++ + TP+HLA +G L+IV ++
Sbjct: 72 DVNAEDNFGITPLHLAAIRGHLEIVEVLL 100
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 59/161 (36%), Gaps = 48/161 (29%)
Query: 472 AAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINR 531
AA + D V+ L+ GAD+N LD++ +PL LAA G + V
Sbjct: 21 AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIV----------------- 63
Query: 532 RNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNT 591
E L+ GA +N ++N +PLHLAA G
Sbjct: 64 ----------------------------EVLLKYGADVNAEDNFGITPLHLAAIRGHLEI 95
Query: 592 VKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQ 632
V+ LL + +N D G T I+ G I Q
Sbjct: 96 VEVLL---KHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 29/110 (26%)
Query: 231 AAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHL 290
AA + D V+ L+ GAD+N LD++ +PL HL
Sbjct: 21 AARAGQDDEVRILMANGADVNALDEDGLTPL---------------------------HL 53
Query: 291 ATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVK 340
A +L + I+ +LL+Y D+ G T LH+AAI E +L+K
Sbjct: 54 AAQLGHLEIVEVLLKYG--ADVNAEDNFGITPLHLAAIRGHLEIVEVLLK 101
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 317 EHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFG 376
E G T LH+AA E +L+K +GA + + G P+H AA + +EV L+ G
Sbjct: 45 EDGLTPLHLAAQLGHLEIVEVLLK-YGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHG 103
Query: 377 ESIGCS 382
+
Sbjct: 104 ADVNAQ 109
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 17 IPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAI 76
I ++G + L+ LHLA +L + I+ +LL+Y D+ G T LH+AAI
Sbjct: 32 ILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYG--ADVNAEDNFGITPLHLAAI 89
Query: 77 YDFDECARILV 87
E +L+
Sbjct: 90 RGHLEIVEVLL 100
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 5/112 (4%)
Query: 157 LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC 216
L A G V + + +GA ++ TP+HLA +G L+IV ++
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD----- 72
Query: 217 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
+N++D TPLH AA ++V+ L++ GAD+N DK ++ ++ G
Sbjct: 73 VNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNG 124
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 5/112 (4%)
Query: 398 LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC 457
L A G V + + +GA ++ TP+HLA +G L+IV ++
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD----- 72
Query: 458 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 509
+N++D TPLH AA ++V+ L++ GAD+N DK ++ ++ G
Sbjct: 73 VNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNG 124
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 5/128 (3%)
Query: 426 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 485
DL + A G D VR++ +N+ D +TPLH AA ++V+ L+
Sbjct: 13 DLGKKLLEATRAGQDDEVRILM-----ANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLL 67
Query: 486 DEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGH 545
GAD+N D R+PL LAA+ G + V L+ A++ +D + + + NG
Sbjct: 68 KHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNED 127
Query: 546 IKEFAEEV 553
+ E +++
Sbjct: 128 LAEILQKL 135
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%)
Query: 146 ISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLM 205
++ D G PLH A G + VE+ LK GA ++ TP+HLA + G L+IV ++
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVL 99
Query: 206 F 206
Sbjct: 100 L 100
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 9/118 (7%)
Query: 332 DECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFA 391
D+ RIL+ + GA + G P+H AAK + +EV L+ G + S
Sbjct: 27 DDEVRILMAN-GADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD-------- 77
Query: 392 AEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNL 449
G PLH A G + VE+ L+ GA ++ Q T ++ G D+ ++ L
Sbjct: 78 IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 8/107 (7%)
Query: 102 GASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAV 161
GA + G P+H AAK + +EV L+ G + S D G PLH A
Sbjct: 37 GADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS--------DIWGRTPLHLAA 88
Query: 162 HGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNL 208
G + VE+ L+ GA ++ Q T ++ G D+ ++ L
Sbjct: 89 TVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 566 GACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFH 625
GA +N +++ +PLHLAA+ G V+ LL + +N SD G TPLH+A+ G
Sbjct: 37 GADVNAMDDAGVTPLHLAAKRGHLEIVEVLL---KHGADVNASDIWGRTPLHLAATVGHL 93
Query: 626 YSVSIF 631
V +
Sbjct: 94 EIVEVL 99
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 10/121 (8%)
Query: 262 LLAASRGGWK-------TNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQ 314
LL A+R G NG + +++ LHLA + + I+ +LL++ D+
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHG--ADVNA 75
Query: 315 GGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQ 374
GRT LH+AA E +L++ +GA + G + N + E+ +
Sbjct: 76 SDIWGRTPLHLAATVGHLEIVEVLLE-YGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Query: 375 F 375
Sbjct: 135 L 135
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 73/160 (45%), Gaps = 28/160 (17%)
Query: 387 ISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLM 446
+++ + +G+ PLH A G + L LK GA + D + P+HLAC QG +V+ +
Sbjct: 79 VNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCL 138
Query: 447 F--NLQPSEK------------------LVCL--------NSTDAQKMTPLHCAAMFDRC 478
N +P++K LV L N+++ + T LH A +
Sbjct: 139 LDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHV 198
Query: 479 DVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLV 518
VV+ L+ GA + VL+K +R+ + A +L +V
Sbjct: 199 FVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQVV 238
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 28/142 (19%)
Query: 146 ISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLM 205
+++ +G+ PLH A G + L LK GA + D + P+HLAC QG +V+ +
Sbjct: 79 VNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCL 138
Query: 206 F--NLQPSEK------------------LVCL--------NSTDAQKMTPLHCAAMFDRC 237
N +P++K LV L N+++ + T LH A +
Sbjct: 139 LDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHV 198
Query: 238 DVVQYLIDEGADLNVLDKEKRS 259
VV+ L+ GA + VL+K +R+
Sbjct: 199 FVVELLLLHGASVQVLNKRQRT 220
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 12/126 (9%)
Query: 458 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTL 517
+N T +PLH AA+ R D++ L+ GA+ + ++ PL LA +G ++ V L
Sbjct: 79 VNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCL 138
Query: 518 VRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNE 577
+ + A KD++ L + +GG H E+ A+ L GA IN NN
Sbjct: 139 LDSNAKPNKKDLSGNTPL-IYACSGGHH------ELVALLLQH-----GASINASNNKGN 186
Query: 578 SPLHLA 583
+ LH A
Sbjct: 187 TALHEA 192
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 69/158 (43%), Gaps = 13/158 (8%)
Query: 175 SGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMF 234
SG ++ D S+P+H+A G D++ L+ + + +A + PLH A
Sbjct: 75 SGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANA-----GARNADQAVPLHLACQQ 129
Query: 235 DRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWK------TNGVNTRILNNKKQAVL 288
VV+ L+D A N D +PL+ A S G + +G + NNK L
Sbjct: 130 GHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTAL 189
Query: 289 HLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIA 326
H A V ++ +LL + + +L + RTA+ A
Sbjct: 190 HEAVIEKHVFVVELLLLHGASVQVL--NKRQRTAVDCA 225
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 78/183 (42%), Gaps = 17/183 (9%)
Query: 416 SGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMF 475
SG ++ D S+P+H+A G D++ L+ + + +A + PLH A
Sbjct: 75 SGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANA-----GARNADQAVPLHLACQQ 129
Query: 476 DRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNIL 535
VV+ L+D A N D +PL+ A S G + V L+++ A+I + L
Sbjct: 130 GHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTAL 189
Query: 536 HLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKL 595
H V+ VF+ E L+ GA + + N + + A + + + ++
Sbjct: 190 HEAVIEKH------------VFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQV 237
Query: 596 LSS 598
+ S
Sbjct: 238 VPS 240
Score = 35.8 bits (81), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 89/207 (42%), Gaps = 29/207 (14%)
Query: 434 ACSQGALDIVRLMF-----NLQPSEKLVCLNSTDAQKMTPL----HCAAMFDRCDVVQYL 484
A + G L++VR + +L+ +E V ++ D + PL CA R V
Sbjct: 18 AVADGDLEMVRYLLEWTEEDLEDAEDTV--SAADPEFCHPLCQCPKCAPAQKRLAKVPA- 74
Query: 485 IDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGG 544
G +NV ++ SPL +AA G + L+++ AN ++ ++ LHL G
Sbjct: 75 --SGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHF 132
Query: 545 HIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFI 604
+ + L++ A N K+ S +PL A G + V LL + G+
Sbjct: 133 QVVKC------------LLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLL--QHGAS- 177
Query: 605 INESDGEGLTPLHIASKEGFHYSVSIF 631
IN S+ +G T LH A E + V +
Sbjct: 178 INASNNKGNTALHEAVIEKHVFVVELL 204
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 9/129 (6%)
Query: 319 GRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGES 378
G + LH+AA++ + +L+K GA+ ++ P+H A + + ++ L +S
Sbjct: 86 GSSPLHVAALHGRADLIPLLLK-HGANAGARNADQAVPLHLACQQGHFQVVKCLL---DS 141
Query: 379 IGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQG 438
++ +S GN PL A GG + V L L+ GA I+ +T +H A +
Sbjct: 142 NAKPNKKDLS-----GNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEK 196
Query: 439 ALDIVRLMF 447
+ +V L+
Sbjct: 197 HVFVVELLL 205
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 5/112 (4%)
Query: 157 LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC 216
L A G V + + +GA ++ + TP+HLA L+IV ++ +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLL-----KNGAD 72
Query: 217 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
+N+ DA TPLH AM+ ++V+ L+ GAD+N DK ++ ++ G
Sbjct: 73 VNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNG 124
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 5/112 (4%)
Query: 398 LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC 457
L A G V + + +GA ++ + TP+HLA L+IV ++ +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLL-----KNGAD 72
Query: 458 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 509
+N+ DA TPLH AM+ ++V+ L+ GAD+N DK ++ ++ G
Sbjct: 73 VNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNG 124
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 63/128 (49%), Gaps = 5/128 (3%)
Query: 426 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 485
DL + A G D VR++ +N+ D +TPLH AAM D ++V+ L+
Sbjct: 13 DLGKKLLEAARAGQDDEVRILM-----ANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLL 67
Query: 486 DEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGH 545
GAD+N +D +PL L A G + V L+++ A++ +D + + + NG
Sbjct: 68 KNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 127
Query: 546 IKEFAEEV 553
+ E +++
Sbjct: 128 LAEILQKL 135
Score = 35.8 bits (81), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 150 DAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMF 206
D G PLH A + VE+ LK+GA ++ TP+HL G L+IV ++
Sbjct: 44 DKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLL 100
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 397 PLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMF 447
PLH A + VE+ LK+GA ++ TP+HL G L+IV ++
Sbjct: 50 PLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLL 100
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 55/131 (41%), Gaps = 16/131 (12%)
Query: 503 LLAASRGGWKT-VLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEN 561
LL A+R G V L+ N A++ +D LHL +N H+ E+ V L
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMND--HL-----EIVEVLLKN- 69
Query: 562 LINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASK 621
GA +N + E+PLHL A YG V+ LL + +N D G T I+
Sbjct: 70 ----GADVNAIDAIGETPLHLVAMYGHLEIVEVLL---KHGADVNAQDKFGKTAFDISID 122
Query: 622 EGFHYSVSIFQ 632
G I Q
Sbjct: 123 NGNEDLAEILQ 133
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 434 ACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNV 493
A G ++ V+ + +Q V + ++ TPLH AA ++R VV+YL+ GAD++
Sbjct: 15 AAKAGDVETVKKLCTVQS----VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA 70
Query: 494 LDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEV 553
DK PL A S G ++ LV++ A + + D+ + LH G I +
Sbjct: 71 KDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKL---- 126
Query: 554 AAVFLGENLINLGACINLKNNSNESPLHL 582
L+ GA KN +PL L
Sbjct: 127 --------LLQHGADPTKKNRDGNTPLDL 147
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 65/146 (44%), Gaps = 12/146 (8%)
Query: 193 ACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNV 252
A G ++ V+ + +Q V + ++ TPLH AA ++R VV+YL+ GAD++
Sbjct: 15 AAKAGDVETVKKLCTVQS----VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA 70
Query: 253 LDKEKRSPLLLAASRGGWKT------NGVNTRILNNKKQAVLHLATELNKVPILLILLQY 306
DK PL A S G ++ +G + + K LH A K I +LLQ+
Sbjct: 71 KDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH 130
Query: 307 KDMIDILQGGEHGRTALHIAAIYDFD 332
D + G T L + D D
Sbjct: 131 G--ADPTKKNRDGNTPLDLVKDGDTD 154
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 67/148 (45%), Gaps = 6/148 (4%)
Query: 392 AEGNLPLHSAVHGGDFKAVE-LCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQ 450
+E + L A GD + V+ LC + STP+H A + +V +
Sbjct: 6 SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG 65
Query: 451 PSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGG 510
+++ D + PLH A + +V + L+ GA +NV D K +PL AA++G
Sbjct: 66 AD-----VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGK 120
Query: 511 WKTVLTLVRNKANILLKDINRRNILHLL 538
++ L+++ A+ K+ + L L+
Sbjct: 121 YEICKLLLQHGADPTKKNRDGNTPLDLV 148
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 10/101 (9%)
Query: 115 PIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLK 174
P+H AA +E LQ G + D G +PLH+A G ++ EL +K
Sbjct: 45 PLHFAAGYNRVSVVEYLLQHGADVHAK--------DKGGLVPLHNACSYGHYEVAELLVK 96
Query: 175 SGAKISTQQFDLSTPVHLACSQGALDIVRLMFN--LQPSEK 213
GA ++ TP+H A ++G +I +L+ P++K
Sbjct: 97 HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKK 137
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 10/101 (9%)
Query: 356 PIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLK 415
P+H AA +E LQ G + + G +PLH+A G ++ EL +K
Sbjct: 45 PLHFAAGYNRVSVVEYLLQHGADVHAKDKG--------GLVPLHNACSYGHYEVAELLVK 96
Query: 416 SGAKISTQQFDLSTPVHLACSQGALDIVRLMFN--LQPSEK 454
GA ++ TP+H A ++G +I +L+ P++K
Sbjct: 97 HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKK 137
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 14/113 (12%)
Query: 23 VNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDEC 82
VN R + ++ LH A N+V ++ LLQ+ D+ + G LH A Y E
Sbjct: 33 VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG--ADVHAKDKGGLVPLHNACSYGHYEV 90
Query: 83 ARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFG 135
A +LV GA + A + P+H+AA + ++ LQ G
Sbjct: 91 AELLVK------------HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHG 131
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 14/127 (11%)
Query: 497 EKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAV 556
E LL AA G +TV L ++ + +DI R L FA V
Sbjct: 7 EADRQLLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPL----------HFAAGYNRV 55
Query: 557 FLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPL 616
+ E L+ GA ++ K+ PLH A YG Y + L+ + ++N +D TPL
Sbjct: 56 SVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLV---KHGAVVNVADLWKFTPL 112
Query: 617 HIASKEG 623
H A+ +G
Sbjct: 113 HEAAAKG 119
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 58/137 (42%), Gaps = 21/137 (15%)
Query: 69 TALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTM 128
T LH AA Y+ R+ V E + GA + G P+H+A +
Sbjct: 44 TPLHFAAGYN-----RVSVVE-------YLLQHGADVHAKDKGGLVPLHNACSYGHYEVA 91
Query: 129 EVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLST 188
E+ ++ G ++++ D PLH A G ++ +L L+ GA + + D +T
Sbjct: 92 ELLVKHGA--------VVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNT 143
Query: 189 PVHLACSQGALDIVRLM 205
P+ L G DI L+
Sbjct: 144 PLDL-VKDGDTDIQDLL 159
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 5/112 (4%)
Query: 157 LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC 216
L A G V + + +GA ++ + TP++LA + G L+IV ++ +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLL-----KNGAD 72
Query: 217 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
+N+ DA TPLH AA ++ + L+ GAD+N DK ++ ++ G
Sbjct: 73 VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNG 124
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 5/112 (4%)
Query: 398 LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC 457
L A G V + + +GA ++ + TP++LA + G L+IV ++ +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLL-----KNGAD 72
Query: 458 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 509
+N+ DA TPLH AA ++ + L+ GAD+N DK ++ ++ G
Sbjct: 73 VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNG 124
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 60/128 (46%), Gaps = 5/128 (3%)
Query: 426 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 485
DL + A G D VR++ +N+ D +TPL+ A ++V+ L+
Sbjct: 13 DLGKKLLEAARAGQDDEVRILM-----ANGADVNAKDEYGLTPLYLATAHGHLEIVEVLL 67
Query: 486 DEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGH 545
GAD+N +D +PL LAA G + L+++ A++ +D + + + NG
Sbjct: 68 KNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNED 127
Query: 546 IKEFAEEV 553
+ E +++
Sbjct: 128 LAEILQKL 135
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 150 DAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMF 206
D G PL+ A G + VE+ LK+GA ++ TP+HLA G L+I ++
Sbjct: 44 DEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLL 100
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 359 DAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGA 418
+AA+ + + + G + E ++ PL+ A G + VE+ LK+GA
Sbjct: 20 EAARAGQDDEVRILMANGADVNAKDEYGLT--------PLYLATAHGHLEIVEVLLKNGA 71
Query: 419 KISTQQFDLSTPVHLACSQGALDIVRLMF 447
++ TP+HLA G L+I ++
Sbjct: 72 DVNAVDAIGFTPLHLAAFIGHLEIAEVLL 100
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 434 ACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNV 493
A G ++ V+ + +Q V + ++ TPLH AA ++R VV+YL+ GAD++
Sbjct: 17 AAKAGDVETVKKLCTVQS----VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA 72
Query: 494 LDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEV 553
DK PL A S G ++ LV++ A + + D+ + LH G I +
Sbjct: 73 KDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKL---- 128
Query: 554 AAVFLGENLINLGACINLKNNSNESPLHL 582
L+ GA KN +PL L
Sbjct: 129 --------LLQHGADPTKKNRDGNTPLDL 149
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 65/146 (44%), Gaps = 12/146 (8%)
Query: 193 ACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNV 252
A G ++ V+ + +Q V + ++ TPLH AA ++R VV+YL+ GAD++
Sbjct: 17 AAKAGDVETVKKLCTVQS----VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA 72
Query: 253 LDKEKRSPLLLAASRGGWKT------NGVNTRILNNKKQAVLHLATELNKVPILLILLQY 306
DK PL A S G ++ +G + + K LH A K I +LLQ+
Sbjct: 73 KDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH 132
Query: 307 KDMIDILQGGEHGRTALHIAAIYDFD 332
D + G T L + D D
Sbjct: 133 G--ADPTKKNRDGNTPLDLVKDGDTD 156
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 67/148 (45%), Gaps = 6/148 (4%)
Query: 392 AEGNLPLHSAVHGGDFKAVE-LCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQ 450
+E + L A GD + V+ LC + STP+H A + +V +
Sbjct: 8 SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG 67
Query: 451 PSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGG 510
+++ D + PLH A + +V + L+ GA +NV D K +PL AA++G
Sbjct: 68 AD-----VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGK 122
Query: 511 WKTVLTLVRNKANILLKDINRRNILHLL 538
++ L+++ A+ K+ + L L+
Sbjct: 123 YEICKLLLQHGADPTKKNRDGNTPLDLV 150
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 10/101 (9%)
Query: 115 PIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLK 174
P+H AA +E LQ G + D G +PLH+A G ++ EL +K
Sbjct: 47 PLHFAAGYNRVSVVEYLLQHGADVHAK--------DKGGLVPLHNACSYGHYEVAELLVK 98
Query: 175 SGAKISTQQFDLSTPVHLACSQGALDIVRLMFN--LQPSEK 213
GA ++ TP+H A ++G +I +L+ P++K
Sbjct: 99 HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKK 139
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 10/101 (9%)
Query: 356 PIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLK 415
P+H AA +E LQ G + + G +PLH+A G ++ EL +K
Sbjct: 47 PLHFAAGYNRVSVVEYLLQHGADVHAKDKG--------GLVPLHNACSYGHYEVAELLVK 98
Query: 416 SGAKISTQQFDLSTPVHLACSQGALDIVRLMFN--LQPSEK 454
GA ++ TP+H A ++G +I +L+ P++K
Sbjct: 99 HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKK 139
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 14/113 (12%)
Query: 23 VNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDEC 82
VN R + ++ LH A N+V ++ LLQ+ D+ + G LH A Y E
Sbjct: 35 VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG--ADVHAKDKGGLVPLHNACSYGHYEV 92
Query: 83 ARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFG 135
A +LV GA + A + P+H+AA + ++ LQ G
Sbjct: 93 AELLVK------------HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHG 133
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 14/127 (11%)
Query: 497 EKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAV 556
E LL AA G +TV L ++ + +DI R L FA V
Sbjct: 9 EADRQLLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPL----------HFAAGYNRV 57
Query: 557 FLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPL 616
+ E L+ GA ++ K+ PLH A YG Y + L+ + ++N +D TPL
Sbjct: 58 SVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLV---KHGAVVNVADLWKFTPL 114
Query: 617 HIASKEG 623
H A+ +G
Sbjct: 115 HEAAAKG 121
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 58/137 (42%), Gaps = 21/137 (15%)
Query: 69 TALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTM 128
T LH AA Y+ R+ V E + GA + G P+H+A +
Sbjct: 46 TPLHFAAGYN-----RVSVVE-------YLLQHGADVHAKDKGGLVPLHNACSYGHYEVA 93
Query: 129 EVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLST 188
E+ ++ G ++++ D PLH A G ++ +L L+ GA + + D +T
Sbjct: 94 ELLVKHGA--------VVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNT 145
Query: 189 PVHLACSQGALDIVRLM 205
P+ L G DI L+
Sbjct: 146 PLDL-VKDGDTDIQDLL 161
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 434 ACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNV 493
A G ++ V+ + +Q V + ++ TPLH AA ++R VV+YL+ GAD++
Sbjct: 19 AAKAGDVETVKKLCTVQS----VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA 74
Query: 494 LDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEV 553
DK PL A S G ++ LV++ A + + D+ + LH G I +
Sbjct: 75 KDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKL---- 130
Query: 554 AAVFLGENLINLGACINLKNNSNESPLHL 582
L+ GA KN +PL L
Sbjct: 131 --------LLQHGADPTKKNRDGNTPLDL 151
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 78/172 (45%), Gaps = 7/172 (4%)
Query: 387 ISLFAAEGNLPLHSAVHGGDFKAVE-LCLKSGAKISTQQFDLSTPVHLACSQGALDIVRL 445
ISL +E + L A GD + V+ LC + STP+H A + +V
Sbjct: 5 ISLGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEY 64
Query: 446 MFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLA 505
+ +++ D + PLH A + +V + L+ GA +NV D K +PL A
Sbjct: 65 LLQHGAD-----VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEA 119
Query: 506 ASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVF 557
A++G ++ L+++ A+ K+ + L LV +G I++ AA+
Sbjct: 120 AAKGKYEICKLLLQHGADPTKKNRDGNTPLD-LVKDGDTDIQDLLRGDAALL 170
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 65/146 (44%), Gaps = 12/146 (8%)
Query: 193 ACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNV 252
A G ++ V+ + +Q V + ++ TPLH AA ++R VV+YL+ GAD++
Sbjct: 19 AAKAGDVETVKKLCTVQS----VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA 74
Query: 253 LDKEKRSPLLLAASRGGWKT------NGVNTRILNNKKQAVLHLATELNKVPILLILLQY 306
DK PL A S G ++ +G + + K LH A K I +LLQ+
Sbjct: 75 KDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH 134
Query: 307 KDMIDILQGGEHGRTALHIAAIYDFD 332
D + G T L + D D
Sbjct: 135 G--ADPTKKNRDGNTPLDLVKDGDTD 158
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 10/101 (9%)
Query: 115 PIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLK 174
P+H AA +E LQ G + D G +PLH+A G ++ EL +K
Sbjct: 49 PLHFAAGYNRVSVVEYLLQHGADVHAK--------DKGGLVPLHNACSYGHYEVAELLVK 100
Query: 175 SGAKISTQQFDLSTPVHLACSQGALDIVRLMFN--LQPSEK 213
GA ++ TP+H A ++G +I +L+ P++K
Sbjct: 101 HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKK 141
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 10/101 (9%)
Query: 356 PIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLK 415
P+H AA +E LQ G + + G +PLH+A G ++ EL +K
Sbjct: 49 PLHFAAGYNRVSVVEYLLQHGADVHAKDKG--------GLVPLHNACSYGHYEVAELLVK 100
Query: 416 SGAKISTQQFDLSTPVHLACSQGALDIVRLMFN--LQPSEK 454
GA ++ TP+H A ++G +I +L+ P++K
Sbjct: 101 HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKK 141
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 14/113 (12%)
Query: 23 VNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDEC 82
VN R + ++ LH A N+V ++ LLQ+ D+ + G LH A Y E
Sbjct: 37 VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG--ADVHAKDKGGLVPLHNACSYGHYEV 94
Query: 83 ARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFG 135
A +LV GA + A + P+H+AA + ++ LQ G
Sbjct: 95 AELLVK------------HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHG 135
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 14/127 (11%)
Query: 497 EKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAV 556
E LL AA G +TV L ++ + +DI R L FA V
Sbjct: 11 EADRQLLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPL----------HFAAGYNRV 59
Query: 557 FLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPL 616
+ E L+ GA ++ K+ PLH A YG Y + L+ + ++N +D TPL
Sbjct: 60 SVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLV---KHGAVVNVADLWKFTPL 116
Query: 617 HIASKEG 623
H A+ +G
Sbjct: 117 HEAAAKG 123
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 58/137 (42%), Gaps = 21/137 (15%)
Query: 69 TALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTM 128
T LH AA Y+ R+ V E + GA + G P+H+A +
Sbjct: 48 TPLHFAAGYN-----RVSVVE-------YLLQHGADVHAKDKGGLVPLHNACSYGHYEVA 95
Query: 129 EVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLST 188
E+ ++ G ++++ D PLH A G ++ +L L+ GA + + D +T
Sbjct: 96 ELLVKHGA--------VVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNT 147
Query: 189 PVHLACSQGALDIVRLM 205
P+ L G DI L+
Sbjct: 148 PLDL-VKDGDTDIQDLL 163
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Query: 157 LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC 216
L A G V + + +GA ++ TP+HLA +G L+IV ++
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD----- 72
Query: 217 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
+N+ D TPLH AA ++V+ L++ GAD+N DK ++ ++ G
Sbjct: 73 VNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNG 124
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Query: 398 LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC 457
L A G V + + +GA ++ TP+HLA +G L+IV ++
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD----- 72
Query: 458 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 509
+N+ D TPLH AA ++V+ L++ GAD+N DK ++ ++ G
Sbjct: 73 VNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNG 124
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 51/96 (53%)
Query: 458 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTL 517
+N+ D +TPLH AA ++V+ L+ GAD+N D R+PL LAA+ G + V L
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVL 99
Query: 518 VRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEV 553
+ A++ +D + + + NG + E +++
Sbjct: 100 LEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/77 (37%), Positives = 41/77 (53%)
Query: 479 DVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLL 538
D V+ L+ GAD+N +D +PL LAA RG + V L+++ A++ +DI R LHL
Sbjct: 28 DEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLA 87
Query: 539 VLNGGGHIKEFAEEVAA 555
G I E E A
Sbjct: 88 ATVGHLEIVEVLLEYGA 104
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 34/61 (55%)
Query: 146 ISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLM 205
++ D G PLH A G + VE+ LK GA ++ + TP+HLA + G L+IV ++
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVL 99
Query: 206 F 206
Sbjct: 100 L 100
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 31/54 (57%)
Query: 394 GNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMF 447
G PLH A G + VE+ LK GA ++ + TP+HLA + G L+IV ++
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLL 100
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 8/107 (7%)
Query: 102 GASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAV 161
GA + G P+H AAK + +EV L+ G + D G PLH A
Sbjct: 37 GADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAR--------DIWGRTPLHLAA 88
Query: 162 HGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNL 208
G + VE+ L+ GA ++ Q T ++ G D+ ++ L
Sbjct: 89 TVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 9/118 (7%)
Query: 332 DECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFA 391
D+ RIL+ + GA + G P+H AAK + +EV L+ G + +R+
Sbjct: 27 DDEVRILMAN-GADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN-ARD------- 77
Query: 392 AEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNL 449
G PLH A G + VE+ L+ GA ++ Q T ++ G D+ ++ L
Sbjct: 78 IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
Score = 37.4 bits (85), Expect = 0.023, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 562 LINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASK 621
L+ GA +N +++ +PLHLAA+ G V+ LL + +N D G TPLH+A+
Sbjct: 33 LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLL---KHGADVNARDIWGRTPLHLAAT 89
Query: 622 EG 623
G
Sbjct: 90 VG 91
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 10/92 (10%)
Query: 262 LLAASRGGWK-------TNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQ 314
LL A+R G NG + +++ LHLA + + I+ +LL++ D+
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHG--ADVNA 75
Query: 315 GGEHGRTALHIAAIYDFDECARILVKDFGASL 346
GRT LH+AA E +L+ ++GA +
Sbjct: 76 RDIWGRTPLHLAATVGHLEIVEVLL-EYGADV 106
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 75/174 (43%), Gaps = 14/174 (8%)
Query: 214 LVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTN 273
L LN + + TPLH A + ++ ++ + L+ G D + D +PL LA +G +
Sbjct: 32 LAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASV 91
Query: 274 GVNT------------RILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRT 321
GV T + N LHLA+ + I+ +L+ ++ Q +GRT
Sbjct: 92 GVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNA-QEPCNGRT 150
Query: 322 ALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQF 375
ALH+A + +L+K GA + R GY P S++ + Q
Sbjct: 151 ALHLAVDLQNPDLVSLLLK-CGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQL 203
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 63/137 (45%), Gaps = 7/137 (5%)
Query: 397 PLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKL- 455
PLH AV + E L +G + F +TP+HLAC QG L V ++ + L
Sbjct: 45 PLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLH 104
Query: 456 VCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDK-EKRSPLLLAASRGGWKTV 514
L +T+ T LH A++ +V+ L+ GAD+N + R+ L LA V
Sbjct: 105 SILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLV 164
Query: 515 LTLVRNKANILLKDINR 531
L++ A D+NR
Sbjct: 165 SLLLKCGA-----DVNR 176
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
Query: 156 PLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKL- 214
PLH AV + E L +G + F +TP+HLAC QG L V ++ + L
Sbjct: 45 PLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLH 104
Query: 215 VCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLN 251
L +T+ T LH A++ +V+ L+ GAD+N
Sbjct: 105 SILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN 141
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 88/210 (41%), Gaps = 28/210 (13%)
Query: 65 EHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNAS 124
E G + LH+A I++ ++ + V Q + D + +F +L++ P+H A
Sbjct: 3 EDGDSFLHLAIIHE-EKALTMEVIRQVKGDLAFL-NFQNNLQQT------PLHLAVITNQ 54
Query: 125 SKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAK------ 178
+ E L GC E L D GN PLH A G +V + +S
Sbjct: 55 PEIAEALL----GAGCDPE----LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSI 106
Query: 179 ISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDA-QKMTPLHCAAMFDRC 237
+ ++ T +HLA G L IV L+ +L +N+ + T LH A
Sbjct: 107 LKATNYNGHTCLHLASIHGYLGIVELLVSLGAD-----VNAQEPCNGRTALHLAVDLQNP 161
Query: 238 DVVQYLIDEGADLNVLDKEKRSPLLLAASR 267
D+V L+ GAD+N + + SP L R
Sbjct: 162 DLVSLLLKCGADVNRVTYQGYSPYQLTWGR 191
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 80/203 (39%), Gaps = 25/203 (12%)
Query: 317 EHGRTALHIAAIYDFD----ECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVF 372
E G + LH+A I++ E R + D A L + P+H A + E
Sbjct: 3 EDGDSFLHLAIIHEEKALTMEVIRQVKGDL-AFLNFQNNLQQTPLHLAVITNQPEIAEAL 61
Query: 373 LQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAK------ISTQQFD 426
L GC E L GN PLH A G +V + +S + ++
Sbjct: 62 L----GAGCDPE----LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYN 113
Query: 427 LSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDA-QKMTPLHCAAMFDRCDVVQYLI 485
T +HLA G L IV L+ +L +N+ + T LH A D+V L+
Sbjct: 114 GHTCLHLASIHGYLGIVELLVSLGAD-----VNAQEPCNGRTALHLAVDLQNPDLVSLLL 168
Query: 486 DEGADLNVLDKEKRSPLLLAASR 508
GAD+N + + SP L R
Sbjct: 169 KCGADVNRVTYQGYSPYQLTWGR 191
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 66/151 (43%), Gaps = 23/151 (15%)
Query: 455 LVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTV 514
L LN + + TPLH A + ++ ++ + L+ G D + D +PL LA +G +V
Sbjct: 32 LAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASV 91
Query: 515 LTLVRNKANILLKDI------NRRNILHLLVLNGGGHIKEFAEEVAAVFLG--ENLINLG 566
L ++ L I N LHL ++G +LG E L++LG
Sbjct: 92 GVLTQSCTTPHLHSILKATNYNGHTCLHLASIHG--------------YLGIVELLVSLG 137
Query: 567 ACINLKNNSN-ESPLHLAARYGRYNTVKKLL 596
A +N + N + LHLA + V LL
Sbjct: 138 ADVNAQEPCNGRTALHLAVDLQNPDLVSLLL 168
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 567 ACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFHY 626
A +N +NN ++PLHLA + + LL + + D G TPLH+A ++G
Sbjct: 33 AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPEL---RDFRGNTPLHLACEQGCLA 89
Query: 627 SVSIF 631
SV +
Sbjct: 90 SVGVL 94
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 48.9 bits (115), Expect = 8e-06, Method: Composition-based stats.
Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 11/129 (8%)
Query: 319 GRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGES 378
GRTAL + + + + R+L++ LK G+ IHDAA+ T++ L+F
Sbjct: 38 GRTALQVMKLGNPEIARRLLLRGANPDLKD--RTGFAVIHDAARAGQLDTLQTLLEF--- 92
Query: 379 IGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLK-SGAKISTQQFDLSTPVHLACSQ 437
+ +++ EGNLPLH A G + VE +K + + + + T LA
Sbjct: 93 -----QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLY 147
Query: 438 GALDIVRLM 446
G ++V LM
Sbjct: 148 GRNEVVSLM 156
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 22/140 (15%)
Query: 67 GRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSK 126
GRTAL + + + + R+L+ GA+ G+ IHDAA+
Sbjct: 38 GRTALQVMKLGNPEIARRLLLR-------------GANPDLKDRTGFAVIHDAARAGQLD 84
Query: 127 TMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLK-SGAKISTQQFD 185
T++ L+F + +++ D EGNLPLH A G + VE +K + + + +
Sbjct: 85 TLQTLLEF--------QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHK 136
Query: 186 LSTPVHLACSQGALDIVRLM 205
T LA G ++V LM
Sbjct: 137 GDTACDLARLYGRNEVVSLM 156
Score = 37.0 bits (84), Expect = 0.034, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 469 LHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKD 528
+H AA + D +Q L++ AD+N+ D E PL LAA G + V LV++ A+ +
Sbjct: 74 IHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS----N 129
Query: 529 INRRN 533
+ RN
Sbjct: 130 VGHRN 134
Score = 32.3 bits (72), Expect = 0.88, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 228 LHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
+H AA + D +Q L++ AD+N+ D E PL LAA G
Sbjct: 74 IHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEG 114
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 4/101 (3%)
Query: 148 LFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFN 207
L D G +H A G ++ L+ A ++ + + + P+HLA +G L +V +
Sbjct: 65 LKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 208 LQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGA 248
S + + + T A ++ R +VV + GA
Sbjct: 125 HTASN----VGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 560 ENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIA 619
+ L+ A +N+++N PLHLAA+ G V+ L+ + + + +G T +A
Sbjct: 87 QTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN--VGHRNHKGDTACDLA 144
Query: 620 SKEGFHYSVSIFQ 632
G + VS+ Q
Sbjct: 145 RLYGRNEVVSLMQ 157
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Query: 156 PLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLV 215
PLH A G+ + CL + ++ ST ++ AC G DIV +F QP+ +
Sbjct: 76 PLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFT-QPN---I 131
Query: 216 CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKR 258
LN + T LH AA D+VQ L+ +GA ++ + EK+
Sbjct: 132 ELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKK 174
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Query: 397 PLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLV 456
PLH A G+ + CL + ++ ST ++ AC G DIV +F QP+ +
Sbjct: 76 PLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFT-QPN---I 131
Query: 457 CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKR 499
LN + T LH AA D+VQ L+ +GA ++ + EK+
Sbjct: 132 ELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKK 174
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 75/174 (43%), Gaps = 14/174 (8%)
Query: 214 LVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTN 273
L LN + + TPLH A + ++ ++ + L+ G D + D +PL LA +G +
Sbjct: 35 LAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASV 94
Query: 274 GVNT------------RILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRT 321
GV T + N LHLA+ + I+ +L+ ++ Q +GRT
Sbjct: 95 GVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNA-QEPCNGRT 153
Query: 322 ALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQF 375
ALH+A + +L+K GA + R GY P S++ + Q
Sbjct: 154 ALHLAVDLQNPDLVSLLLK-CGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQL 206
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 63/137 (45%), Gaps = 7/137 (5%)
Query: 397 PLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKL- 455
PLH AV + E L +G + F +TP+HLAC QG L V ++ + L
Sbjct: 48 PLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLH 107
Query: 456 VCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDK-EKRSPLLLAASRGGWKTV 514
L +T+ T LH A++ +V+ L+ GAD+N + R+ L LA V
Sbjct: 108 SILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLV 167
Query: 515 LTLVRNKANILLKDINR 531
L++ A D+NR
Sbjct: 168 SLLLKCGA-----DVNR 179
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
Query: 156 PLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKL- 214
PLH AV + E L +G + F +TP+HLAC QG L V ++ + L
Sbjct: 48 PLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLH 107
Query: 215 VCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLN 251
L +T+ T LH A++ +V+ L+ GAD+N
Sbjct: 108 SILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN 144
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 88/210 (41%), Gaps = 28/210 (13%)
Query: 65 EHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNAS 124
E G + LH+A I++ ++ + V Q + D + +F +L++ P+H A
Sbjct: 6 EDGDSFLHLAIIHE-EKALTMEVIRQVKGDLAFL-NFQNNLQQT------PLHLAVITNQ 57
Query: 125 SKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAK------ 178
+ E L GC E L D GN PLH A G +V + +S
Sbjct: 58 PEIAEALL----GAGCDPE----LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSI 109
Query: 179 ISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDA-QKMTPLHCAAMFDRC 237
+ ++ T +HLA G L IV L+ +L +N+ + T LH A
Sbjct: 110 LKATNYNGHTCLHLASIHGYLGIVELLVSLGAD-----VNAQEPCNGRTALHLAVDLQNP 164
Query: 238 DVVQYLIDEGADLNVLDKEKRSPLLLAASR 267
D+V L+ GAD+N + + SP L R
Sbjct: 165 DLVSLLLKCGADVNRVTYQGYSPYQLTWGR 194
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 66/151 (43%), Gaps = 23/151 (15%)
Query: 455 LVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTV 514
L LN + + TPLH A + ++ ++ + L+ G D + D +PL LA +G +V
Sbjct: 35 LAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASV 94
Query: 515 LTLVRNKANILLKDI------NRRNILHLLVLNGGGHIKEFAEEVAAVFLG--ENLINLG 566
L ++ L I N LHL ++G +LG E L++LG
Sbjct: 95 GVLTQSCTTPHLHSILKATNYNGHTCLHLASIHG--------------YLGIVELLVSLG 140
Query: 567 ACINLKNNSN-ESPLHLAARYGRYNTVKKLL 596
A +N + N + LHLA + V LL
Sbjct: 141 ADVNAQEPCNGRTALHLAVDLQNPDLVSLLL 171
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 80/203 (39%), Gaps = 25/203 (12%)
Query: 317 EHGRTALHIAAIYDFD----ECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVF 372
E G + LH+A I++ E R + D A L + P+H A + E
Sbjct: 6 EDGDSFLHLAIIHEEKALTMEVIRQVKGDL-AFLNFQNNLQQTPLHLAVITNQPEIAEAL 64
Query: 373 LQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAK------ISTQQFD 426
L GC E L GN PLH A G +V + +S + ++
Sbjct: 65 L----GAGCDPE----LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYN 116
Query: 427 LSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDA-QKMTPLHCAAMFDRCDVVQYLI 485
T +HLA G L IV L+ +L +N+ + T LH A D+V L+
Sbjct: 117 GHTCLHLASIHGYLGIVELLVSLGAD-----VNAQEPCNGRTALHLAVDLQNPDLVSLLL 171
Query: 486 DEGADLNVLDKEKRSPLLLAASR 508
GAD+N + + SP L R
Sbjct: 172 KCGADVNRVTYQGYSPYQLTWGR 194
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 567 ACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFHY 626
A +N +NN ++PLHLA + + LL + + D G TPLH+A ++G
Sbjct: 36 AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPEL---RDFRGNTPLHLACEQGCLA 92
Query: 627 SVSIF 631
SV +
Sbjct: 93 SVGVL 97
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 5/127 (3%)
Query: 142 REEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDI 201
+E +I+ D EG PL A G VE L++GA + + LACS+G DI
Sbjct: 25 QENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDI 84
Query: 202 VRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPL 261
V+++ + V +N D TPL A + V+ L++ GAD + + +
Sbjct: 85 VKMLLDCG-----VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSM 139
Query: 262 LLAASRG 268
LA + G
Sbjct: 140 DLAVALG 146
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 69/149 (46%), Gaps = 6/149 (4%)
Query: 383 REEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDI 442
+E +I+ EG PL A G VE L++GA + + LACS+G DI
Sbjct: 25 QENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDI 84
Query: 443 VRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPL 502
V+++ + V +N D TPL A + V+ L++ GAD + + +
Sbjct: 85 VKMLLDCG-----VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSM 139
Query: 503 LLAASRGGWKTVLTLVRNKANILLKDINR 531
LA + G+++V ++ + LL++I
Sbjct: 140 DLAVAL-GYRSVQQVIESHLLKLLQNIKE 167
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 77/171 (45%), Gaps = 18/171 (10%)
Query: 428 STPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDE 487
S VH +QG +++ E+ +N TD + TPL AA + VV++L+
Sbjct: 4 SLSVHQLAAQG-----EMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQN 58
Query: 488 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 547
GAD +L K + S L LA S+G V L+ ++ D N LL G H+K
Sbjct: 59 GADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGT--PLLYAVHGNHVK 116
Query: 548 EFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSS 598
+ L+ GA ++ +S + + LA G Y +V++++ S
Sbjct: 117 CV----------KMLLESGADPTIETDSGYNSMDLAVALG-YRSVQQVIES 156
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 187 STPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDE 246
S VH +QG +++ E+ +N TD + TPL AA + VV++L+
Sbjct: 4 SLSVHQLAAQG-----EMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQN 58
Query: 247 GADLNVLDKEKRSPLLLAASRG 268
GAD +L K + S L LA S+G
Sbjct: 59 GADPQLLGKGRESALSLACSKG 80
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 5/127 (3%)
Query: 142 REEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDI 201
+E +I+ D EG PL A G VE L++GA + + LACS+G DI
Sbjct: 41 QENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDI 100
Query: 202 VRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPL 261
V+++ + V +N D TPL A + V+ L++ GAD + + +
Sbjct: 101 VKMLLDCG-----VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSM 155
Query: 262 LLAASRG 268
LA + G
Sbjct: 156 DLAVALG 162
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 6/147 (4%)
Query: 383 REEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDI 442
+E +I+ EG PL A G VE L++GA + + LACS+G DI
Sbjct: 41 QENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDI 100
Query: 443 VRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPL 502
V+++ + V +N D TPL A + V+ L++ GAD + + +
Sbjct: 101 VKMLLDCG-----VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSM 155
Query: 503 LLAASRGGWKTVLTLVRNKANILLKDI 529
LA + G+++V ++ + LL++I
Sbjct: 156 DLAVAL-GYRSVQQVIESHLLKLLQNI 181
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 77/171 (45%), Gaps = 18/171 (10%)
Query: 428 STPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDE 487
S VH +QG +++ E+ +N TD + TPL AA + VV++L+
Sbjct: 20 SLSVHQLAAQG-----EMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQN 74
Query: 488 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 547
GAD +L K + S L LA S+G V L+ ++ D N LL G H+K
Sbjct: 75 GADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGT--PLLYAVHGNHVK 132
Query: 548 EFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSS 598
+ L+ GA ++ +S + + LA G Y +V++++ S
Sbjct: 133 CV----------KMLLESGADPTIETDSGYNSMDLAVALG-YRSVQQVIES 172
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 187 STPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDE 246
S VH +QG +++ E+ +N TD + TPL AA + VV++L+
Sbjct: 20 SLSVHQLAAQG-----EMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQN 74
Query: 247 GADLNVLDKEKRSPLLLAASRG 268
GAD +L K + S L LA S+G
Sbjct: 75 GADPQLLGKGRESALSLACSKG 96
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 5/127 (3%)
Query: 142 REEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDI 201
+E +I+ D EG PL A G VE L++GA + + LACS+G DI
Sbjct: 23 QENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDI 82
Query: 202 VRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPL 261
V+++ + V +N D TPL A + V+ L++ GAD + + +
Sbjct: 83 VKMLLDCG-----VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSM 137
Query: 262 LLAASRG 268
LA + G
Sbjct: 138 DLAVALG 144
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 68/146 (46%), Gaps = 6/146 (4%)
Query: 383 REEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDI 442
+E +I+ EG PL A G VE L++GA + + LACS+G DI
Sbjct: 23 QENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDI 82
Query: 443 VRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPL 502
V+++ + V +N D TPL A + V+ L++ GAD + + +
Sbjct: 83 VKMLLDCG-----VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSM 137
Query: 503 LLAASRGGWKTVLTLVRNKANILLKD 528
LA + G+++V ++ + LL++
Sbjct: 138 DLAVAL-GYRSVQQVIESHLLKLLQN 162
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 77/171 (45%), Gaps = 18/171 (10%)
Query: 428 STPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDE 487
S VH +QG +++ E+ +N TD + TPL AA + VV++L+
Sbjct: 2 SLSVHQLAAQG-----EMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQN 56
Query: 488 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 547
GAD +L K + S L LA S+G V L+ ++ D N LL G H+K
Sbjct: 57 GADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGT--PLLYAVHGNHVK 114
Query: 548 EFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSS 598
+ L+ GA ++ +S + + LA G Y +V++++ S
Sbjct: 115 CV----------KMLLESGADPTIETDSGYNSMDLAVALG-YRSVQQVIES 154
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 187 STPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDE 246
S VH +QG +++ E+ +N TD + TPL AA + VV++L+
Sbjct: 2 SLSVHQLAAQG-----EMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQN 56
Query: 247 GADLNVLDKEKRSPLLLAASRG 268
GAD +L K + S L LA S+G
Sbjct: 57 GADPQLLGKGRESALSLACSKG 78
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 11/129 (8%)
Query: 319 GRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGES 378
GRTAL + + + + R+L++ LK G+ IHDAA+ T++ L+F
Sbjct: 38 GRTALQVMKLGNPEIARRLLLRGANPDLKD--RTGFAVIHDAARAGFLDTLQTLLEF--- 92
Query: 379 IGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLK-SGAKISTQQFDLSTPVHLACSQ 437
+ +++ EGNLPLH A G + VE +K + + + + T LA
Sbjct: 93 -----QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLY 147
Query: 438 GALDIVRLM 446
G ++V LM
Sbjct: 148 GRNEVVSLM 156
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 22/140 (15%)
Query: 67 GRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSK 126
GRTAL + + + + R+L+ GA+ G+ IHDAA+
Sbjct: 38 GRTALQVMKLGNPEIARRLLLR-------------GANPDLKDRTGFAVIHDAARAGFLD 84
Query: 127 TMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLK-SGAKISTQQFD 185
T++ L+F + +++ D EGNLPLH A G + VE +K + + + +
Sbjct: 85 TLQTLLEF--------QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHK 136
Query: 186 LSTPVHLACSQGALDIVRLM 205
T LA G ++V LM
Sbjct: 137 GDTACDLARLYGRNEVVSLM 156
Score = 35.4 bits (80), Expect = 0.094, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 469 LHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKD 528
+H AA D +Q L++ AD+N+ D E PL LAA G + V LV++ A+ +
Sbjct: 74 IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS----N 129
Query: 529 INRRN 533
+ RN
Sbjct: 130 VGHRN 134
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 560 ENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIA 619
+ L+ A +N+++N PLHLAA+ G V+ L+ + + + +G T +A
Sbjct: 87 QTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN--VGHRNHKGDTACDLA 144
Query: 620 SKEGFHYSVSIFQ 632
G + VS+ Q
Sbjct: 145 RLYGRNEVVSLMQ 157
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 228 LHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
+H AA D +Q L++ AD+N+ D E PL LAA G
Sbjct: 74 IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEG 114
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 11/129 (8%)
Query: 319 GRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGES 378
GRTAL + + + + R+L++ LK G+ IHDAA+ T++ L+F
Sbjct: 38 GRTALQVMKLGNPEIARRLLLRGANPDLKD--RTGFAVIHDAARAGFLDTLQTLLEF--- 92
Query: 379 IGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLK-SGAKISTQQFDLSTPVHLACSQ 437
+ +++ EGNLPLH A G + VE +K + + + + T LA
Sbjct: 93 -----QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLY 147
Query: 438 GALDIVRLM 446
G ++V LM
Sbjct: 148 GRNEVVSLM 156
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 22/140 (15%)
Query: 67 GRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSK 126
GRTAL + + + + R+L+ GA+ G+ IHDAA+
Sbjct: 38 GRTALQVMKLGNPEIARRLLLR-------------GANPDLKDRTGFAVIHDAARAGFLD 84
Query: 127 TMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLK-SGAKISTQQFD 185
T++ L+F + +++ D EGNLPLH A G + VE +K + + + +
Sbjct: 85 TLQTLLEF--------QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHK 136
Query: 186 LSTPVHLACSQGALDIVRLM 205
T LA G ++V LM
Sbjct: 137 GDTACDLARLYGRNEVVSLM 156
Score = 35.4 bits (80), Expect = 0.098, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 469 LHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKD 528
+H AA D +Q L++ AD+N+ D E PL LAA G + V LV++ A+ +
Sbjct: 74 IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS----N 129
Query: 529 INRRN 533
+ RN
Sbjct: 130 VGHRN 134
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 560 ENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIA 619
+ L+ A +N+++N PLHLAA+ G V+ L+ + + + +G T +A
Sbjct: 87 QTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN--VGHRNHKGDTACDLA 144
Query: 620 SKEGFHYSVSIFQ 632
G + VS+ Q
Sbjct: 145 RLYGRNEVVSLMQ 157
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 228 LHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
+H AA D +Q L++ AD+N+ D E PL LAA G
Sbjct: 74 IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEG 114
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 90/206 (43%), Gaps = 25/206 (12%)
Query: 429 TPVHLACSQGA-LDIVRLMFNLQPSEKLVC---------LNST-DAQKMTPLHCAAMFDR 477
TP+ +A +G LD + N + S V LN+T D T LH AA F R
Sbjct: 4 TPLMIAAVRGGGLDTGEDIENNEDSTAQVISDLLAQGAELNATMDKTGETSLHLAARFAR 63
Query: 478 CDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHL 537
D + L+D GAD N D R+PL A + L+RN+A ++N R
Sbjct: 64 ADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRA----TNLNAR----- 114
Query: 538 LVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLS 597
++ G A +A + E+LI A IN +NS ++ LH AA V LL
Sbjct: 115 --MHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLM 172
Query: 598 SERGSFIINESDGEGLTPLHIASKEG 623
+ D + TPL +A++EG
Sbjct: 173 HHANR---DAQDDKDETPLFLAAREG 195
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 6/136 (4%)
Query: 394 GNLPLHSAVHGGDFKAVELCLKSGA-KISTQQFDLSTPVHLACSQGALDIVRLMFNLQPS 452
G PLH+AV ++ L++ A ++ + D +TP+ LA L I ++ +L +
Sbjct: 84 GRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAAR---LAIEGMVEDLITA 140
Query: 453 EKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWK 512
+ +N+ D T LH AA + + V L+ A+ + D + +PL LAA G ++
Sbjct: 141 D--ADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYE 198
Query: 513 TVLTLVRNKANILLKD 528
L+ N AN + D
Sbjct: 199 ASKALLDNFANREITD 214
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 6/123 (4%)
Query: 150 DAEGNLPLHSAVHGGDFKAVELCLKSGA-KISTQQFDLSTPVHLACSQGALDIVRLMFNL 208
D G PLH+AV ++ L++ A ++ + D +TP+ LA L I ++ +L
Sbjct: 81 DNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAAR---LAIEGMVEDL 137
Query: 209 QPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
++ +N+ D T LH AA + + V L+ A+ + D + +PL LAA G
Sbjct: 138 ITAD--ADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREG 195
Query: 269 GWK 271
++
Sbjct: 196 SYE 198
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 83/215 (38%), Gaps = 53/215 (24%)
Query: 414 LKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAA 473
L +GA ++Q TP+H A + A+ + +++ + LN+ TPL AA
Sbjct: 71 LDAGADANSQDNTGRTPLHAAVAADAMGVFQILL----RNRATNLNARMHDGTTPLILAA 126
Query: 474 MFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRN 533
+V+ LI AD+N D ++ L AA+ + V NILL
Sbjct: 127 RLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAV--------NILL------- 171
Query: 534 ILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVK 593
+H H A++ + +E+PL LAAR G Y K
Sbjct: 172 -MH--------HANRDAQD---------------------DKDETPLFLAAREGSYEASK 201
Query: 594 KLLSSERGSFIINESDGEGLTPLHIASKEGFHYSV 628
LL + I + D P +AS E H+ +
Sbjct: 202 ALLDNFANREITDHMD---RLPRDVAS-ERLHHDI 232
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 76/175 (43%), Gaps = 30/175 (17%)
Query: 188 TPVHLACSQGA-LDIVRLMFNLQPSEKLVC---------LNST-DAQKMTPLHCAAMFDR 236
TP+ +A +G LD + N + S V LN+T D T LH AA F R
Sbjct: 4 TPLMIAAVRGGGLDTGEDIENNEDSTAQVISDLLAQGAELNATMDKTGETSLHLAARFAR 63
Query: 237 CDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKK---QAVLHLATE 293
D + L+D GAD N D R+PL A + GV +L N+ A +H T
Sbjct: 64 ADAAKRLLDAGADANSQDNTGRTPLHAAVAADAM---GVFQILLRNRATNLNARMHDGT- 119
Query: 294 LNKVPILL-----ILLQYKDMI----DILQGGEHGRTALHIAAIYDFDECARILV 339
P++L I +D+I DI G+TALH AA + E IL+
Sbjct: 120 ---TPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILL 171
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 68/169 (40%), Gaps = 14/169 (8%)
Query: 319 GRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGES 378
GRT LH A D +IL+++ +L +G P+ AA+ A +E +
Sbjct: 84 GRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADAD 143
Query: 379 IGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQG 438
I + G LH A + +AV + L A Q TP+ LA +G
Sbjct: 144 INAADN--------SGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREG 195
Query: 439 ALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDE 487
+ + + + + + ++ TD P A+ D+V+ L+DE
Sbjct: 196 SYEASKALLDNFANREI-----TDHMDRLPRDVASERLHHDIVR-LLDE 238
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 83/177 (46%), Gaps = 22/177 (12%)
Query: 458 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASR---GGWKTV 514
+N+ D + TPL A + R +V YL GAD + +K +RS L AA+ G
Sbjct: 159 VNAXDCDENTPLXLAVLARRRRLVAYLXKAGADPTIYNKSERSALHQAAANRDFGXXVYX 218
Query: 515 LTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNN 574
L + K +I D N L ++ N G ++VA+ L L+ GA ++
Sbjct: 219 LNSTKLKGDIEELDRNGXTALXIVAHNEG------RDQVASAKL---LVEKGAKVDYDGA 269
Query: 575 SNE--------SPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
+ + + LH AA+ VK L+ E+GS ++ D +G TP+ +A++EG
Sbjct: 270 ARKDSEKYKGRTALHYAAQVSNXPIVKYLV-GEKGSN-KDKQDEDGKTPIXLAAQEG 324
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 76/181 (41%), Gaps = 18/181 (9%)
Query: 217 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGW------ 270
+N+ D + TPL A + R +V YL GAD + +K +RS L AA+ +
Sbjct: 159 VNAXDCDENTPLXLAVLARRRRLVAYLXKAGADPTIYNKSERSALHQAAANRDFGXXVYX 218
Query: 271 ----KTNGVNTRILNNKKQAVLHLATE--LNKVPILLILLQYKDMIDILQGGE------H 318
K G + N A+ +A ++V +L++ +D
Sbjct: 219 LNSTKLKGDIEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYK 278
Query: 319 GRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGES 378
GRTALH AA + LV + G++ + +G PI AA+ + + +Q G S
Sbjct: 279 GRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGAS 338
Query: 379 I 379
+
Sbjct: 339 V 339
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 4/98 (4%)
Query: 167 KAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMT 226
K ++ A+ ++++ T +H A IV+ + + S K + D T
Sbjct: 260 KGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNK----DKQDEDGKT 315
Query: 227 PLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLA 264
P+ AA R +VV YLI +GA + +D + LA
Sbjct: 316 PIXLAAQEGRIEVVXYLIQQGASVEAVDATDHTARQLA 353
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 4/98 (4%)
Query: 408 KAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMT 467
K ++ A+ ++++ T +H A IV+ + + S K + D T
Sbjct: 260 KGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNK----DKQDEDGKT 315
Query: 468 PLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLA 505
P+ AA R +VV YLI +GA + +D + LA
Sbjct: 316 PIXLAAQEGRIEVVXYLIQQGASVEAVDATDHTARQLA 353
Score = 35.4 bits (80), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 93/249 (37%), Gaps = 47/249 (18%)
Query: 244 IDEGADLNVLDKEKRSPLLLA--ASR----GGWKTNGVNTRILNNKKQAVLHLATELNKV 297
I GAD+N D ++ +PL LA A R G + I N +++ LH A
Sbjct: 153 IAAGADVNAXDCDENTPLXLAVLARRRRLVAYLXKAGADPTIYNKSERSALHQAAANRDF 212
Query: 298 PILLILLQYKDMI-DILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYP 356
+ L + DI + +G TAL I A + +D AS K G
Sbjct: 213 GXXVYXLNSTKLKGDIEELDRNGXTALXIVAHNEG--------RDQVASAKLLVEKGAKV 264
Query: 357 IHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVE-LCLK 415
+D A S+ +G LH A + V+ L +
Sbjct: 265 DYDGAARKDSEKY-----------------------KGRTALHYAAQVSNXPIVKYLVGE 301
Query: 416 SGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTD------AQKMTPL 469
G+ Q D TP+ LA +G +++V + +Q + +++TD AQ
Sbjct: 302 KGSNKDKQDEDGKTPIXLAAQEGRIEVVXYL--IQQGASVEAVDATDHTARQLAQANNHH 359
Query: 470 HCAAMFDRC 478
+ +FDRC
Sbjct: 360 NIVDIFDRC 368
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 37/129 (28%), Positives = 60/129 (46%), Gaps = 11/129 (8%)
Query: 319 GRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGES 378
GRTAL + + + + R+L++ LK N IHDAA+ T++ L+F
Sbjct: 38 GRTALQVMKLGNPEIARRLLLRGANPDLKDRTGNAV--IHDAARAGFLDTLQTLLEF--- 92
Query: 379 IGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLK-SGAKISTQQFDLSTPVHLACSQ 437
+ +++ EGNLPLH A G + VE +K + + + + T LA
Sbjct: 93 -----QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLY 147
Query: 438 GALDIVRLM 446
G ++V LM
Sbjct: 148 GRNEVVSLM 156
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 38/140 (27%), Positives = 61/140 (43%), Gaps = 22/140 (15%)
Query: 67 GRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSK 126
GRTAL + + + + R+L+ GA+ G IHDAA+
Sbjct: 38 GRTALQVMKLGNPEIARRLLLR-------------GANPDLKDRTGNAVIHDAARAGFLD 84
Query: 127 TMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLK-SGAKISTQQFD 185
T++ L+F + +++ D EGNLPLH A G + VE +K + + + +
Sbjct: 85 TLQTLLEF--------QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHK 136
Query: 186 LSTPVHLACSQGALDIVRLM 205
T LA G ++V LM
Sbjct: 137 GDTACDLARLYGRNEVVSLM 156
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 469 LHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKD 528
+H AA D +Q L++ AD+N+ D E PL LAA G + V LV++ A+ +
Sbjct: 74 IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS----N 129
Query: 529 INRRN 533
+ RN
Sbjct: 130 VGHRN 134
Score = 33.1 bits (74), Expect = 0.51, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
Query: 148 LFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFN 207
L D GN +H A G ++ L+ A ++ + + + P+HLA +G L +V +
Sbjct: 65 LKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 208 LQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGA 248
S + + + T A ++ R +VV + GA
Sbjct: 125 HTASN----VGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Query: 394 GNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSE 453
GN +H A G ++ L+ A ++ + + + P+HLA +G L +V + S
Sbjct: 70 GNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN 129
Query: 454 KLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGA 489
+ + + T A ++ R +VV + GA
Sbjct: 130 ----VGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 560 ENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIA 619
+ L+ A +N+++N PLHLAA+ G V+ L+ + + + +G T +A
Sbjct: 87 QTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN--VGHRNHKGDTACDLA 144
Query: 620 SKEGFHYSVSIFQ 632
G + VS+ Q
Sbjct: 145 RLYGRNEVVSLMQ 157
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 228 LHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
+H AA D +Q L++ AD+N+ D E PL LAA G
Sbjct: 74 IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEG 114
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 34/100 (34%), Positives = 52/100 (52%), Gaps = 4/100 (4%)
Query: 532 RNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNT 591
R ++H LN G + + L+ GA N+++ S SP+H AAR G +T
Sbjct: 24 RELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDT 83
Query: 592 VKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIF 631
+K L+ E G+ +N DG G P+H+A +EG H +V F
Sbjct: 84 LKVLV--EHGA-DVNVPDGTGALPIHLAVQEG-HTAVVSF 119
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 9/104 (8%)
Query: 102 GASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAV 161
GAS ++G P+HDAA+ T++V ++ G + D G LP+H AV
Sbjct: 58 GASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVP--------DGTGALPIHLAV 109
Query: 162 HGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLM 205
G V L + + + + TP+ LA +GA D+V ++
Sbjct: 110 QEGHTAVVSF-LAAESDLHRRDARGLTPLELALQRGAQDLVDIL 152
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 60/128 (46%), Gaps = 11/128 (8%)
Query: 319 GRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGES 378
G+TAL + ++ A L+K GAS ++G P+HDAA+ T++V ++ G
Sbjct: 36 GKTALQVM-MFGSTAIALELLKQ-GASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGAD 93
Query: 379 IGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQG 438
+ G LP+H AV G V L + + + + TP+ LA +G
Sbjct: 94 VNVPD--------GTGALPIHLAVQEGHTAVVSF-LAAESDLHRRDARGLTPLELALQRG 144
Query: 439 ALDIVRLM 446
A D+V ++
Sbjct: 145 AQDLVDIL 152
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 9/100 (9%)
Query: 218 NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNT 277
N D +P+H AA D ++ L++ GAD+NV D P+ LA G +T
Sbjct: 62 NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEG-------HT 114
Query: 278 RILNN-KKQAVLHLATELNKVPILLILLQ-YKDMIDILQG 315
+++ ++ LH P+ L L + +D++DILQG
Sbjct: 115 AVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQG 154
Score = 36.6 bits (83), Expect = 0.046, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Query: 150 DAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQ 209
D G P+H A G +++ ++ GA ++ + P+HLA +G +V F
Sbjct: 65 DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVS--FLAA 122
Query: 210 PSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYL 243
S+ L+ DA+ +TPL A D+V L
Sbjct: 123 ESD----LHRRDARGLTPLELALQRGAQDLVDIL 152
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 459 NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 509
N D +P+H AA D ++ L++ GAD+NV D P+ LA G
Sbjct: 62 NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEG 112
Score = 34.3 bits (77), Expect = 0.20, Method: Composition-based stats.
Identities = 37/159 (23%), Positives = 57/159 (35%), Gaps = 49/159 (30%)
Query: 474 MFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRN 533
MF + L+ +GA NV D SP+ AA G T+ LV + A++
Sbjct: 44 MFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADV--------- 94
Query: 534 ILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVK 593
N+ + + P+HLA + G + V
Sbjct: 95 ------------------------------------NVPDGTGALPIHLAVQEG-HTAVV 117
Query: 594 KLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQ 632
L++E ++ D GLTPL +A + G V I Q
Sbjct: 118 SFLAAESD---LHRRDARGLTPLELALQRGAQDLVDILQ 153
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
Query: 394 GNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSE 453
G P+H A G +++ ++ GA ++ + P+HLA +G +V F S+
Sbjct: 68 GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVS--FLAAESD 125
Query: 454 KLVCLNSTDAQKMTPLHCAAMFDRCDVVQYL 484
L+ DA+ +TPL A D+V L
Sbjct: 126 ----LHRRDARGLTPLELALQRGAQDLVDIL 152
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 34/100 (34%), Positives = 52/100 (52%), Gaps = 4/100 (4%)
Query: 532 RNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNT 591
R ++H LN G + + L+ GA N+++ S SP+H AAR G +T
Sbjct: 30 RELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDT 89
Query: 592 VKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIF 631
+K L+ E G+ +N DG G P+H+A +EG H +V F
Sbjct: 90 LKVLV--EHGA-DVNVPDGTGALPIHLAVQEG-HTAVVSF 125
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 9/104 (8%)
Query: 102 GASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAV 161
GAS ++G P+HDAA+ T++V ++ G + D G LP+H AV
Sbjct: 64 GASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVP--------DGTGALPIHLAV 115
Query: 162 HGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLM 205
G V L + + + + TP+ LA +GA D+V ++
Sbjct: 116 QEGHTAVVSF-LAAESDLHRRDARGLTPLELALQRGAQDLVDIL 158
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 60/128 (46%), Gaps = 11/128 (8%)
Query: 319 GRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGES 378
G+TAL + ++ A L+K GAS ++G P+HDAA+ T++V ++ G
Sbjct: 42 GKTALQVM-MFGSTAIALELLKQ-GASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGAD 99
Query: 379 IGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQG 438
+ G LP+H AV G V L + + + + TP+ LA +G
Sbjct: 100 VNVPD--------GTGALPIHLAVQEGHTAVVSF-LAAESDLHRRDARGLTPLELALQRG 150
Query: 439 ALDIVRLM 446
A D+V ++
Sbjct: 151 AQDLVDIL 158
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 9/100 (9%)
Query: 218 NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNT 277
N D +P+H AA D ++ L++ GAD+NV D P+ LA G +T
Sbjct: 68 NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEG-------HT 120
Query: 278 RILNN-KKQAVLHLATELNKVPILLILLQ-YKDMIDILQG 315
+++ ++ LH P+ L L + +D++DILQG
Sbjct: 121 AVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQG 160
Score = 36.6 bits (83), Expect = 0.048, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Query: 150 DAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQ 209
D G P+H A G +++ ++ GA ++ + P+HLA +G +V F
Sbjct: 71 DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVS--FLAA 128
Query: 210 PSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYL 243
S+ L+ DA+ +TPL A D+V L
Sbjct: 129 ESD----LHRRDARGLTPLELALQRGAQDLVDIL 158
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 459 NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 509
N D +P+H AA D ++ L++ GAD+NV D P+ LA G
Sbjct: 68 NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEG 118
Score = 34.3 bits (77), Expect = 0.22, Method: Composition-based stats.
Identities = 37/159 (23%), Positives = 57/159 (35%), Gaps = 49/159 (30%)
Query: 474 MFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRN 533
MF + L+ +GA NV D SP+ AA G T+ LV + A++
Sbjct: 50 MFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADV--------- 100
Query: 534 ILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVK 593
N+ + + P+HLA + G + V
Sbjct: 101 ------------------------------------NVPDGTGALPIHLAVQEG-HTAVV 123
Query: 594 KLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQ 632
L++E ++ D GLTPL +A + G V I Q
Sbjct: 124 SFLAAESD---LHRRDARGLTPLELALQRGAQDLVDILQ 159
Score = 34.3 bits (77), Expect = 0.24, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
Query: 394 GNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSE 453
G P+H A G +++ ++ GA ++ + P+HLA +G +V F S+
Sbjct: 74 GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVS--FLAAESD 131
Query: 454 KLVCLNSTDAQKMTPLHCAAMFDRCDVVQYL 484
L+ DA+ +TPL A D+V L
Sbjct: 132 ----LHRRDARGLTPLELALQRGAQDLVDIL 158
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 73/173 (42%), Gaps = 15/173 (8%)
Query: 459 NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLV 518
N D+ TPL A M + + L++ L D E + L+ A L+
Sbjct: 29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLL 88
Query: 519 RNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNES 578
+N+ KD + + L ++ G + F L+ GA +N +N E+
Sbjct: 89 SKGSNVNTKDFSGKTPLMWSIIFGYSEMSYF------------LLEHGANVNDRNLEGET 136
Query: 579 PLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIF 631
PL +A++YGR VKKLL E G+ I+ D GLT A G + IF
Sbjct: 137 PLIVASKYGRSEIVKKLL--ELGA-DISARDLTGLTAEASARIFGRQEVIKIF 186
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
Query: 150 DAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQ 209
D EG+ L AV E L G+ ++T+ F TP+ + G ++ +
Sbjct: 65 DIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLL--- 121
Query: 210 PSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLD 254
E +N + + TPL A+ + R ++V+ L++ GAD++ D
Sbjct: 122 --EHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARD 164
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 64/133 (48%), Gaps = 5/133 (3%)
Query: 397 PLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLV 456
PL A G A++ +++ K+ + + ST + A L I + + K
Sbjct: 38 PLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLS-----KGS 92
Query: 457 CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLT 516
+N+ D TPL + +F ++ +L++ GA++N + E +PL++A+ G + V
Sbjct: 93 NVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKK 152
Query: 517 LVRNKANILLKDI 529
L+ A+I +D+
Sbjct: 153 LLELGADISARDL 165
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 5/103 (4%)
Query: 393 EGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPS 452
EG+ L AV E L G+ ++T+ F TP+ + G ++ +
Sbjct: 67 EGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLL----- 121
Query: 453 EKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLD 495
E +N + + TPL A+ + R ++V+ L++ GAD++ D
Sbjct: 122 EHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARD 164
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 5/119 (4%)
Query: 150 DAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQ 209
D+ PL A G A++ +++ K+ + + ST + A L I + +
Sbjct: 32 DSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLS-- 89
Query: 210 PSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
K +N+ D TPL + +F ++ +L++ GA++N + E +PL++A+ G
Sbjct: 90 ---KGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYG 145
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 92/224 (41%), Gaps = 18/224 (8%)
Query: 33 QAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPE 92
++ L LA + N V L LL+++ ++ Q G G TALHIAA+YD E A +L+ PE
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEG-CEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62
Query: 93 CDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAE 152
+ + G +H A N + + L G S+ + +
Sbjct: 63 LVF-------EPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPH 115
Query: 153 -----GNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFN 207
G PL A G + V L ++ GA I Q +T +H+ Q M+N
Sbjct: 116 NLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYN 175
Query: 208 LQPS----EKLVCLN-STDAQKMTPLHCAAMFDRCDVVQYLIDE 246
L S + L L + Q +TP A + + Q+L+ +
Sbjct: 176 LLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQK 219
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 90/217 (41%), Gaps = 15/217 (6%)
Query: 285 QAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKD--- 341
++ L LA + N V L LL+++ ++ Q G G TALHIAA+YD E A +L++
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEG-CEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62
Query: 342 -FGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAE-----GN 395
+ G +H A N + + L G S+ + + G
Sbjct: 63 LVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGE 122
Query: 396 LPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPS--- 452
PL A G + V L ++ GA I Q +T +H+ Q M+NL S
Sbjct: 123 HPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDG 182
Query: 453 -EKLVCLN-STDAQKMTPLHCAAMFDRCDVVQYLIDE 487
+ L L + Q +TP A + + Q+L+ +
Sbjct: 183 GDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQK 219
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 89/222 (40%), Gaps = 24/222 (10%)
Query: 397 PLHSAVHGGDFKAVELCLK-SGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKL 455
PL A D +A+ LK G ++ + T +H+A L+ ++ P
Sbjct: 6 PLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVF 65
Query: 456 VCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNV-------------LDKEKRSPL 502
+ S + T LH A + ++V+ L+ GA ++ L PL
Sbjct: 66 EPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPL 125
Query: 503 LLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFL---- 558
AA G + V L+ + A+I +D +LH+L+L K FA ++ + L
Sbjct: 126 SFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPN---KTFACQMYNLLLSYDG 182
Query: 559 GENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSER 600
G++L +L + NN +P LA G + L+ +
Sbjct: 183 GDHLKSLEL---VPNNQGLTPFKLAGVEGNIVMFQHLMQKRK 221
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 11/129 (8%)
Query: 319 GRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGES 378
GRTAL + + + + R+L++ LK G+ IHDAA+ T++ L+
Sbjct: 38 GRTALQVMKLGNPEIARRLLLRGANPDLKD--RTGFAVIHDAARAGFLDTLQTLLE---- 91
Query: 379 IGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLK-SGAKISTQQFDLSTPVHLACSQ 437
+ +++ EGNLPLH A G + VE +K + + + + T LA
Sbjct: 92 ----NQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLY 147
Query: 438 GALDIVRLM 446
G ++V LM
Sbjct: 148 GRNEVVSLM 156
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 22/140 (15%)
Query: 67 GRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSK 126
GRTAL + + + + R+L+ GA+ G+ IHDAA+
Sbjct: 38 GRTALQVMKLGNPEIARRLLLR-------------GANPDLKDRTGFAVIHDAARAGFLD 84
Query: 127 TMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLK-SGAKISTQQFD 185
T++ L+ + +++ D EGNLPLH A G + VE +K + + + +
Sbjct: 85 TLQTLLE--------NQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHK 136
Query: 186 LSTPVHLACSQGALDIVRLM 205
T LA G ++V LM
Sbjct: 137 GDTACDLARLYGRNEVVSLM 156
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 558 LGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLH 617
+ L+ GA +LK+ + + +H AAR G +T++ LL ++ +N D EG PLH
Sbjct: 52 IARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQAD---VNIEDNEGNLPLH 108
Query: 618 IASKEGFHYSVSIFQVTY 635
+A+KEG H V F V +
Sbjct: 109 LAAKEG-HLRVVEFLVKH 125
Score = 36.6 bits (83), Expect = 0.045, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 469 LHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKD 528
+H AA D +Q L++ AD+N+ D E PL LAA G + V LV++ A+ +
Sbjct: 74 IHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS----N 129
Query: 529 INRRN 533
+ RN
Sbjct: 130 VGHRN 134
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 228 LHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
+H AA D +Q L++ AD+N+ D E PL LAA G
Sbjct: 74 IHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEG 114
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 13/124 (10%)
Query: 479 DVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNI-LHL 537
++ + L+ GA+ ++ D+ + + AA G T+ TL+ N+A++ ++D N N+ LHL
Sbjct: 51 EIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIED-NEGNLPLHL 109
Query: 538 LVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLS 597
G + EF + A +G +N+ ++ LA YGR V + +
Sbjct: 110 AAKEGHLRVVEFLVKHTASNVGH-----------RNHKGDTACDLARLYGRNEVVSLMQA 158
Query: 598 SERG 601
+ G
Sbjct: 159 NGAG 162
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
Query: 148 LFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFN 207
L D G +H A G ++ L++ A ++ + + + P+HLA +G L +V +
Sbjct: 65 LKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 208 LQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGA 248
S + + + T A ++ R +VV + GA
Sbjct: 125 HTASN----VGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Query: 562 LINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASK 621
L+ GA N+++ S SP+H AAR G +T+K L+ E G+ +N D G P+H+A +
Sbjct: 60 LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLV--EHGA-DVNALDSTGSLPIHLAIR 116
Query: 622 EGFHYSVSIF 631
EG H SV F
Sbjct: 117 EG-HSSVVSF 125
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 34/139 (24%), Positives = 66/139 (47%), Gaps = 11/139 (7%)
Query: 68 RTALHIAAIYDFDECA-RILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSK 126
R +H A+ F + A ++++ P ++K GAS ++G P+HDAA+
Sbjct: 30 RELVHPDALNRFGKTALQVMMFGSPAVALELLKQ-GASPNVQDASGTSPVHDAARTGFLD 88
Query: 127 TMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDL 186
T++V ++ G + D+ G+LP+H A+ G V L + + +
Sbjct: 89 TLKVLVEHGADVNA--------LDSTGSLPIHLAIREGHSSVVSF-LAPESDLHHRDASG 139
Query: 187 STPVHLACSQGALDIVRLM 205
TP+ LA +GA +++ ++
Sbjct: 140 LTPLELARQRGAQNLMDIL 158
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 150 DAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQ 209
DA G P+H A G +++ ++ GA ++ S P+HLA +G +V L
Sbjct: 71 DASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSF---LA 127
Query: 210 PSEKLVCLNSTDAQKMTPLHCA 231
P L+ DA +TPL A
Sbjct: 128 PESD---LHHRDASGLTPLELA 146
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 11/128 (8%)
Query: 319 GRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGES 378
G+TAL + ++ A L+K GAS ++G P+HDAA+ T++V ++ G
Sbjct: 42 GKTALQVM-MFGSPAVALELLKQ-GASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGAD 99
Query: 379 IGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQG 438
+ + G+LP+H A+ G V L + + + TP+ LA +G
Sbjct: 100 VNA--------LDSTGSLPIHLAIREGHSSVVSF-LAPESDLHHRDASGLTPLELARQRG 150
Query: 439 ALDIVRLM 446
A +++ ++
Sbjct: 151 AQNLMDIL 158
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 459 NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLV 518
N DA +P+H AA D ++ L++ GAD+N LD P+ LA R G +V++ +
Sbjct: 68 NVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAI-REGHSSVVSFL 126
Query: 519 RNKANILLKD 528
++++ +D
Sbjct: 127 APESDLHHRD 136
Score = 37.7 bits (86), Expect = 0.020, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 562 LINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASK 621
L+ GA +N +++ P+HLA R G +++V L+ E ++ D GLTPL +A +
Sbjct: 93 LVEHGADVNALDSTGSLPIHLAIREG-HSSVVSFLAPESD---LHHRDASGLTPLELARQ 148
Query: 622 EGFHYSVSIFQ 632
G + I Q
Sbjct: 149 RGAQNLMDILQ 159
Score = 37.4 bits (85), Expect = 0.024, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 27/51 (52%)
Query: 218 NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
N DA +P+H AA D ++ L++ GAD+N LD P+ LA G
Sbjct: 68 NVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREG 118
Score = 37.0 bits (84), Expect = 0.036, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 392 AEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQP 451
A G P+H A G +++ ++ GA ++ S P+HLA +G +V L P
Sbjct: 72 ASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSF---LAP 128
Query: 452 SEKLVCLNSTDAQKMTPLHCA 472
L+ DA +TPL A
Sbjct: 129 ESD---LHHRDASGLTPLELA 146
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Query: 562 LINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASK 621
L+ GA N+++ S SP+H AAR G +T+K L+ E G+ +N D G P+H+A +
Sbjct: 62 LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLV--EHGA-DVNALDSTGSLPIHLAIR 118
Query: 622 EGFHYSVSIF 631
EG H SV F
Sbjct: 119 EG-HSSVVSF 127
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 34/139 (24%), Positives = 66/139 (47%), Gaps = 11/139 (7%)
Query: 68 RTALHIAAIYDFDECA-RILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSK 126
R +H A+ F + A ++++ P ++K GAS ++G P+HDAA+
Sbjct: 32 RELVHPDALNRFGKTALQVMMFGSPAVALELLKQ-GASPNVQDASGTSPVHDAARTGFLD 90
Query: 127 TMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDL 186
T++V ++ G + D+ G+LP+H A+ G V L + + +
Sbjct: 91 TLKVLVEHGADVNA--------LDSTGSLPIHLAIREGHSSVVSF-LAPESDLHHRDASG 141
Query: 187 STPVHLACSQGALDIVRLM 205
TP+ LA +GA +++ ++
Sbjct: 142 LTPLELARQRGAQNLMDIL 160
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 150 DAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQ 209
DA G P+H A G +++ ++ GA ++ S P+HLA +G +V L
Sbjct: 73 DASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSF---LA 129
Query: 210 PSEKLVCLNSTDAQKMTPLHCA 231
P L+ DA +TPL A
Sbjct: 130 PESD---LHHRDASGLTPLELA 148
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 11/128 (8%)
Query: 319 GRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGES 378
G+TAL + ++ A L+K GAS ++G P+HDAA+ T++V ++ G
Sbjct: 44 GKTALQVM-MFGSPAVALELLKQ-GASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGAD 101
Query: 379 IGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQG 438
+ + G+LP+H A+ G V L + + + TP+ LA +G
Sbjct: 102 VNA--------LDSTGSLPIHLAIREGHSSVVSF-LAPESDLHHRDASGLTPLELARQRG 152
Query: 439 ALDIVRLM 446
A +++ ++
Sbjct: 153 AQNLMDIL 160
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 459 NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLV 518
N DA +P+H AA D ++ L++ GAD+N LD P+ LA R G +V++ +
Sbjct: 70 NVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAI-REGHSSVVSFL 128
Query: 519 RNKANILLKD 528
++++ +D
Sbjct: 129 APESDLHHRD 138
Score = 37.7 bits (86), Expect = 0.020, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 562 LINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASK 621
L+ GA +N +++ P+HLA R G +++V L+ E ++ D GLTPL +A +
Sbjct: 95 LVEHGADVNALDSTGSLPIHLAIREG-HSSVVSFLAPESD---LHHRDASGLTPLELARQ 150
Query: 622 EGFHYSVSIFQ 632
G + I Q
Sbjct: 151 RGAQNLMDILQ 161
Score = 37.4 bits (85), Expect = 0.024, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 27/51 (52%)
Query: 218 NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
N DA +P+H AA D ++ L++ GAD+N LD P+ LA G
Sbjct: 70 NVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREG 120
Score = 37.0 bits (84), Expect = 0.036, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 392 AEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQP 451
A G P+H A G +++ ++ GA ++ S P+HLA +G +V L P
Sbjct: 74 ASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSF---LAP 130
Query: 452 SEKLVCLNSTDAQKMTPLHCA 472
L+ DA +TPL A
Sbjct: 131 ESD---LHHRDASGLTPLELA 148
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 65/136 (47%), Gaps = 9/136 (6%)
Query: 145 MISLFDAEGNLPLHSAVHGGDFKAVELCLKSGA-KISTQQFDLSTPVHLACSQGALDIVR 203
++++ D+ GN LH +V +F V+ L SG K+ Q +P+ L AL ++
Sbjct: 103 VVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLT----ALATLK 158
Query: 204 LMFNLQPSEKLVCLNSTDAQK----MTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRS 259
+++ +L L + +A+ T L A R DVV+ L+ AD+NV D + +
Sbjct: 159 TQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGST 218
Query: 260 PLLLAASRGGWKTNGV 275
L+ A G + G+
Sbjct: 219 ALMCACEHGHKEIAGL 234
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 9/129 (6%)
Query: 386 MISLFAAEGNLPLHSAVHGGDFKAVELCLKSGA-KISTQQFDLSTPVHLACSQGALDIVR 444
++++ + GN LH +V +F V+ L SG K+ Q +P+ L AL ++
Sbjct: 103 VVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLT----ALATLK 158
Query: 445 LMFNLQPSEKLVCLNSTDAQK----MTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRS 500
+++ +L L + +A+ T L A R DVV+ L+ AD+NV D + +
Sbjct: 159 TQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGST 218
Query: 501 PLLLAASRG 509
L+ A G
Sbjct: 219 ALMCACEHG 227
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 44/169 (26%), Positives = 70/169 (41%), Gaps = 16/169 (9%)
Query: 150 DAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQ 209
D EGN PL+ AVH D + + + GA I+ Q +P A +QG +I+ M
Sbjct: 36 DTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHA 95
Query: 210 PSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEG-ADLNVLDKEKRSPLLLAAS-R 267
+ LN + L AA D V+ L+++G D++ + + L+ A R
Sbjct: 96 TPD----LNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLR 151
Query: 268 GGWK----------TNGVNTRILNNKKQAVLHLATELNKVPILLILLQY 306
G + NG + I +N + + A + I IL QY
Sbjct: 152 EGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200
Score = 37.7 bits (86), Expect = 0.021, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 458 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTL 517
++ D + TPL+ A + ++ + LID GAD+N+ + SP L A ++G + + +
Sbjct: 32 VDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYM 91
Query: 518 VRNKANILLKDINRRN 533
+++ D+N+ N
Sbjct: 92 LKHAT----PDLNKHN 103
Score = 36.6 bits (83), Expect = 0.050, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 217 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
++ D + TPL+ A + ++ + LID GAD+N+ + SP L A ++G
Sbjct: 32 VDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQG 83
Score = 36.2 bits (82), Expect = 0.057, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 4/98 (4%)
Query: 393 EGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPS 452
EGN PL+ AVH D + + + GA I+ Q +P A +QG +I+ M
Sbjct: 38 EGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATP 97
Query: 453 EKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGAD 490
+ LN + L AA D V+ L+++G +
Sbjct: 98 D----LNKHNRYGGNALIPAAEKGHIDNVKLLLEDGRE 131
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 71/173 (41%), Gaps = 8/173 (4%)
Query: 281 NNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVK 340
N+ Q LHLA L + + L Y +L G TALH+A CA +L++
Sbjct: 42 NDLGQTALHLAAILGEASTVEKL--YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQ 99
Query: 341 DFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFG-ESIGCSREEMISL-FAAE---GN 395
+ + A D + S V Q E+ R+E L AE G+
Sbjct: 100 PRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGH 159
Query: 396 LPLHSAVHGGDFKAVELCLKSGAKISTQQFDLS-TPVHLACSQGALDIVRLMF 447
PLH AV D + V L +GA ++ + TP+HLA A ++ L+
Sbjct: 160 TPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLL 212
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 319 GRTALHIAAIYDFDECARILVKDFGASL-KRACSNGYYPIHDAAKNASSKTMEVFLQFG 376
G T LH+A I+ E R+L +D GA L K + G P+H A + ++ +E+ L+ G
Sbjct: 158 GHTPLHVAVIHKDAEMVRLL-RDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG 215
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 569 INLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSV 628
++L+N+ ++ LHLAA G +TV+KL ++ G + G T LH+A + H
Sbjct: 38 LDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERG---GHTALHLACRVRAHTCA 94
Query: 629 SIF 631
+
Sbjct: 95 CVL 97
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 66/181 (36%), Gaps = 48/181 (26%)
Query: 129 EVFLQF--GESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDL 186
E FL F G S G E + L + G LH A G+ VE +GA + +
Sbjct: 22 EPFLDFLLGFSAG---HEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGG 78
Query: 187 STPVHLACSQGALDIVRLMFNLQPS-----------EKLVCLNST-------DAQK---- 224
T +HLAC A ++ +PS + C T D+Q
Sbjct: 79 HTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPEN 138
Query: 225 --------------------MTPLHCAAMFDRCDVVQYLIDEGADLNVLDKE-KRSPLLL 263
TPLH A + ++V+ L D GADLN + R+PL L
Sbjct: 139 EEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHL 198
Query: 264 A 264
A
Sbjct: 199 A 199
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 72/197 (36%), Gaps = 44/197 (22%)
Query: 29 NNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVS 88
N+ Q LHLA L + + L Y +L G TALH+A CA +L+
Sbjct: 42 NDLGQTALHLAAILGEASTVEKL--YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQ 99
Query: 89 EQPE-----CDWIMVK------------------------------DFGASLKRACSNGY 113
+P D + + D+ L+ +G+
Sbjct: 100 PRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGH 159
Query: 114 YPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCL 173
P+H A + ++ + + G + ++ E G PLH AV +EL L
Sbjct: 160 TPLHVAVIHKDAEMVRLLRDAGADL--NKPEPTC-----GRTPLHLAVEAQAASVLELLL 212
Query: 174 KSGAKISTQQFDLSTPV 190
K+GA + + + TP+
Sbjct: 213 KAGADPTARMYGGRTPL 229
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Query: 178 KISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQ-KMTPLHCAAMFDR 236
++ + +D TP+H+A ++VRL+ + LN + TPLH A
Sbjct: 150 QLEAENYDGHTPLHVAVIHKDAEMVRLLRDAG-----ADLNKPEPTCGRTPLHLAVEAQA 204
Query: 237 CDVVQYLIDEGADLNVLDKEKRSPL 261
V++ L+ GAD R+PL
Sbjct: 205 ASVLELLLKAGADPTARMYGGRTPL 229
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 467 TPLHCAAMFDRCDVVQYLIDEGADLNVLDKE-KRSPLLLAASRGGWKTVLTLVRNKANIL 525
TPLH A + ++V+ L D GADLN + R+PL LA + L++ A+
Sbjct: 160 TPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPT 219
Query: 526 LKDINRRNIL 535
+ R L
Sbjct: 220 ARMYGGRTPL 229
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 340 KDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLH 399
+D+ L+ +G+ P+H A + ++ + + G + ++ E G PLH
Sbjct: 145 EDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADL--NKPEPTC-----GRTPLH 197
Query: 400 SAVHGGDFKAVELCLKSGAKISTQQFDLSTPV 431
AV +EL LK+GA + + + TP+
Sbjct: 198 LAVEAQAASVLELLLKAGADPTARMYGGRTPL 229
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 71/173 (41%), Gaps = 8/173 (4%)
Query: 281 NNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVK 340
N+ Q LHLA L + + L Y +L G TALH+A CA +L++
Sbjct: 42 NDLGQTALHLAAILGEASTVEKL--YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQ 99
Query: 341 DFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFG-ESIGCSREEMISL-FAAE---GN 395
+ + A D + S V Q E+ R+E L AE G+
Sbjct: 100 PRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGH 159
Query: 396 LPLHSAVHGGDFKAVELCLKSGAKISTQQFDLS-TPVHLACSQGALDIVRLMF 447
PLH AV D + V L +GA ++ + TP+HLA A ++ L+
Sbjct: 160 TPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLL 212
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 319 GRTALHIAAIYDFDECARILVKDFGASL-KRACSNGYYPIHDAAKNASSKTMEVFLQFG 376
G T LH+A I+ E R+L +D GA L K + G P+H A + ++ +E+ L+ G
Sbjct: 158 GHTPLHVAVIHKDAEMVRLL-RDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG 215
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 569 INLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSV 628
++L+N+ ++ LHLAA G +TV+KL ++ G + G T LH+A + H
Sbjct: 38 LDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERG---GHTALHLACRVRAHTCA 94
Query: 629 SIF 631
+
Sbjct: 95 CVL 97
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 66/181 (36%), Gaps = 48/181 (26%)
Query: 129 EVFLQF--GESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDL 186
E FL F G S G E + L + G LH A G+ VE +GA + +
Sbjct: 22 EPFLDFLLGFSAG---HEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGG 78
Query: 187 STPVHLACSQGALDIVRLMFNLQPS-----------EKLVCLNST-------DAQK---- 224
T +HLAC A ++ +PS + C T D+Q
Sbjct: 79 HTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPEN 138
Query: 225 --------------------MTPLHCAAMFDRCDVVQYLIDEGADLNVLDKE-KRSPLLL 263
TPLH A + ++V+ L D GADLN + R+PL L
Sbjct: 139 EEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHL 198
Query: 264 A 264
A
Sbjct: 199 A 199
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 72/197 (36%), Gaps = 44/197 (22%)
Query: 29 NNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVS 88
N+ Q LHLA L + + L Y +L G TALH+A CA +L+
Sbjct: 42 NDLGQTALHLAAILGEASTVEKL--YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQ 99
Query: 89 EQPE-----CDWIMVK------------------------------DFGASLKRACSNGY 113
+P D + + D+ L+ +G+
Sbjct: 100 PRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGH 159
Query: 114 YPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCL 173
P+H A + ++ + + G + ++ E G PLH AV +EL L
Sbjct: 160 TPLHVAVIHKDAEMVRLLRDAGADL--NKPEPTC-----GRTPLHLAVEAQAASVLELLL 212
Query: 174 KSGAKISTQQFDLSTPV 190
K+GA + + + TP+
Sbjct: 213 KAGADPTARMYGGRTPL 229
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Query: 178 KISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQ-KMTPLHCAAMFDR 236
++ + +D TP+H+A ++VRL+ + LN + TPLH A
Sbjct: 150 QLEAENYDGHTPLHVAVIHKDAEMVRLLRDAG-----ADLNKPEPTCGRTPLHLAVEAQA 204
Query: 237 CDVVQYLIDEGADLNVLDKEKRSPL 261
V++ L+ GAD R+PL
Sbjct: 205 ASVLELLLKAGADPTARMYGGRTPL 229
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 467 TPLHCAAMFDRCDVVQYLIDEGADLNVLDKE-KRSPLLLAASRGGWKTVLTLVRNKANIL 525
TPLH A + ++V+ L D GADLN + R+PL LA + L++ A+
Sbjct: 160 TPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPT 219
Query: 526 LKDINRRNIL 535
+ R L
Sbjct: 220 ARMYGGRTPL 229
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 340 KDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLH 399
+D+ L+ +G+ P+H A + ++ + + G + ++ E G PLH
Sbjct: 145 EDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADL--NKPEPTC-----GRTPLH 197
Query: 400 SAVHGGDFKAVELCLKSGAKISTQQFDLSTPV 431
AV +EL LK+GA + + + TP+
Sbjct: 198 LAVEAQAASVLELLLKAGADPTARMYGGRTPL 229
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 164 GDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQ 223
G+F V+ + S + T +H A G +IV+ + V +N+ D+
Sbjct: 48 GEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFG-----VNVNAADSD 102
Query: 224 KMTPLHCAAMFDRCDVVQYLIDEGA 248
TPLHCAA + V ++L++ GA
Sbjct: 103 GWTPLHCAASCNNVQVCKFLVESGA 127
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 405 GDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQ 464
G+F V+ + S + T +H A G +IV+ + V +N+ D+
Sbjct: 48 GEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFG-----VNVNAADSD 102
Query: 465 KMTPLHCAAMFDRCDVVQYLIDEGA 489
TPLHCAA + V ++L++ GA
Sbjct: 103 GWTPLHCAASCNNVQVCKFLVESGA 127
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 317 EHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFG 376
+ G TALH A E + LV+ FG ++ A S+G+ P+H AA + + + ++ G
Sbjct: 68 DEGITALHNAVCAGHTEIVKFLVQ-FGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESG 126
Query: 377 ESI 379
++
Sbjct: 127 AAV 129
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 147 SLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLM 205
SL + EG LH+AV G + V+ ++ G ++ D TP+H A S + + + +
Sbjct: 64 SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFL 122
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 388 SLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLM 446
SL EG LH+AV G + V+ ++ G ++ D TP+H A S + + + +
Sbjct: 64 SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFL 122
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 223 QKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAAS 266
+ +T LH A ++V++L+ G ++N D + +PL AAS
Sbjct: 69 EGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAAS 112
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 464 QKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAAS 507
+ +T LH A ++V++L+ G ++N D + +PL AAS
Sbjct: 69 EGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAAS 112
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 164 GDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQ 223
G+F V+ + S + T +H A G +IV+ + V +N+ D+
Sbjct: 48 GEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFG-----VNVNAADSD 102
Query: 224 KMTPLHCAAMFDRCDVVQYLIDEGA 248
TPLHCAA + V ++L++ GA
Sbjct: 103 GWTPLHCAASCNNVQVCKFLVESGA 127
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 405 GDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQ 464
G+F V+ + S + T +H A G +IV+ + V +N+ D+
Sbjct: 48 GEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFG-----VNVNAADSD 102
Query: 465 KMTPLHCAAMFDRCDVVQYLIDEGA 489
TPLHCAA + V ++L++ GA
Sbjct: 103 GWTPLHCAASCNNVQVCKFLVESGA 127
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 14/119 (11%)
Query: 274 GVNTRILNNKKQAVLH-LATELNKVPILLIL-LQYKDMIDILQ-----------GGEHGR 320
G T + + + H + + N +P+ L+L + D++Q + G
Sbjct: 12 GKRTNLRKTGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGI 71
Query: 321 TALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESI 379
TALH A E + LV+ FG ++ A S+G+ P+H AA + + + ++ G ++
Sbjct: 72 TALHNAVCAGHTEIVKFLVQ-FGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 147 SLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLM 205
SL + EG LH+AV G + V+ ++ G ++ D TP+H A S + + + +
Sbjct: 64 SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFL 122
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 388 SLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLM 446
SL EG LH+AV G + V+ ++ G ++ D TP+H A S + + + +
Sbjct: 64 SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFL 122
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 223 QKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAAS 266
+ +T LH A ++V++L+ G ++N D + +PL AAS
Sbjct: 69 EGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAAS 112
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 464 QKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAAS 507
+ +T LH A ++V++L+ G ++N D + +PL AAS
Sbjct: 69 EGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAAS 112
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 85/204 (41%), Gaps = 22/204 (10%)
Query: 319 GRTALHIAAIYDFDECARILVKDFGASLKRACS--NGYYPIHDAAKNASSKTMEVFLQFG 376
G TALH+A + + A+ L AS+ S +G PIH A + + ++
Sbjct: 53 GCTALHLACKFGCVDTAKYL-----ASVGEVHSLWHGQKPIHLAVXANKTDLVVALVEGA 107
Query: 377 ESIG---------CSREEMISLFA----AEGNLPLHSAVHGGD--FKAVELCLKSGAKIS 421
+ G C E+ + + +G LH V G + +++ ++ GA +
Sbjct: 108 KERGQXPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEXIKILVQLGASPT 167
Query: 422 TQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVV 481
+ TP+ A + + L + PS+ + L+ + Q + LH A + + DV
Sbjct: 168 AKDKADETPLXRAXEFRNREALDLXXDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVA 227
Query: 482 QYLIDEGADLNVLDKEKRSPLLLA 505
++ G D+N D E PL L+
Sbjct: 228 XRFVEXGIDVNXEDNEHTVPLYLS 251
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 83/213 (38%), Gaps = 29/213 (13%)
Query: 67 GRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSK 126
G TALH+A + + A+ L S + +G PIH A +
Sbjct: 53 GCTALHLACKFGCVDTAKYLAS--------------VGEVHSLWHGQKPIHLAVXANKTD 98
Query: 127 TMEVFLQFGESIGCSREEMISLFDA-------------EGNLPLHSAVHGGD--FKAVEL 171
+ ++ + G E +++ D +G LH V G + +++
Sbjct: 99 LVVALVEGAKERGQXPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEXIKI 158
Query: 172 CLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCA 231
++ GA + + TP+ A + + L + PS+ + L+ + Q + LH A
Sbjct: 159 LVQLGASPTAKDKADETPLXRAXEFRNREALDLXXDTVPSKSSLRLDYANKQGNSHLHWA 218
Query: 232 AMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLA 264
+ + DV ++ G D+N D E PL L+
Sbjct: 219 ILINWEDVAXRFVEXGIDVNXEDNEHTVPLYLS 251
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 573 NNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG----FHYSV 628
++ N +H+AAR G+ + V++L+ + I N G T LH+A K G Y
Sbjct: 17 DDENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRF---GCTALHLACKFGCVDTAKYLA 73
Query: 629 SIFQVTYVW 637
S+ +V +W
Sbjct: 74 SVGEVHSLW 82
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 74/199 (37%), Gaps = 49/199 (24%)
Query: 398 LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC 457
+H A G V +++G + Q T +HLAC G +D + + ++ L
Sbjct: 24 IHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL-- 81
Query: 458 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTL 517
QK P+H A ++ D+V L+ EGA RG
Sbjct: 82 ---WHGQK--PIHLAVXANKTDLVVALV-EGA----------------KERG-------- 111
Query: 518 VRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVA---AVFLGEN-------LINLGA 567
LL + + R + + G H+K + A V LG L+ LGA
Sbjct: 112 --QXPESLLNECDEREVNEI-----GSHVKHCKGQTALHWCVGLGPEYLEXIKILVQLGA 164
Query: 568 CINLKNNSNESPLHLAARY 586
K+ ++E+PL A +
Sbjct: 165 SPTAKDKADETPLXRAXEF 183
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 8/99 (8%)
Query: 150 DAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQ 209
D E +H A G V +++G + Q T +HLAC G +D + + ++
Sbjct: 17 DDENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVG 76
Query: 210 PSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGA 248
L QK P+H A ++ D+V L+ EGA
Sbjct: 77 EVHSL-----WHGQK--PIHLAVXANKTDLVVALV-EGA 107
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 68/168 (40%), Gaps = 14/168 (8%)
Query: 468 PLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILL- 526
PLH AA + +V+ L+ G D + D + + L A G +TV V+ +
Sbjct: 65 PLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNXQTVKLFVKKNWRLXFY 124
Query: 527 -KDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACIN--LKNNSNESPLHLA 583
K + + H + LN + F E+ + F +L L +CI+ +KN + + L
Sbjct: 125 GKTGWKTSFYHAVXLNDVSIVSYFLSEIPSTF---DLAILLSCIHITIKNGHVDXXILLL 181
Query: 584 ARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIF 631
NT LL I+ D E L L F Y ++I+
Sbjct: 182 DYXTSTNTNNSLLFIPDIKLAIDNKDIEXLQAL-------FKYDINIY 222
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 562 LINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASK 621
L+N GA NL NE PLH AA VK LL S ++ D +G T L+ A
Sbjct: 50 LLNAGALKNLL--ENEFPLHQAATLEDTKIVKILLFSGLDD---SQFDDKGNTALYYAVD 104
Query: 622 EGFHYSVSIF 631
G +V +F
Sbjct: 105 SGNXQTVKLF 114
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%)
Query: 472 AAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINR 531
AA + D V+ L+ GAD+N DK+ +PL LAA G + V L++ A++ +D
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Query: 532 RNILHLLVLNGGGHIKEFAEEVA 554
+ + + NG + E ++ A
Sbjct: 69 KTAFDISIDNGNEDLAEILQKAA 91
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 185 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 244
DL + A G D VR++ +N+ D TPLH AA ++V+ L+
Sbjct: 1 DLGKKLLEAARAGQDDEVRILM-----ANGADVNAKDKDGYTPLHLAAREGHLEIVEVLL 55
Query: 245 DEGADLNVLDKEKRSPLLLAASRG 268
GAD+N DK ++ ++ G
Sbjct: 56 KAGADVNAQDKFGKTAFDISIDNG 79
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 426 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 485
DL + A G D VR++ +N+ D TPLH AA ++V+ L+
Sbjct: 1 DLGKKLLEAARAGQDDEVRILM-----ANGADVNAKDKDGYTPLHLAAREGHLEIVEVLL 55
Query: 486 DEGADLNVLDKEKRSPLLLAASRG 509
GAD+N DK ++ ++ G
Sbjct: 56 KAGADVNAQDKFGKTAFDISIDNG 79
Score = 35.8 bits (81), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 566 GACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFH 625
GA +N K+ +PLHLAAR G V+ LL + +N D G T I+ G
Sbjct: 25 GADVNAKDKDGYTPLHLAAREGHLEIVEVLL---KAGADVNAQDKFGKTAFDISIDNGNE 81
Query: 626 YSVSIFQ 632
I Q
Sbjct: 82 DLAEILQ 88
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 157 LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMF 206
L A G V + + +GA ++ + D TP+HLA +G L+IV ++
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLL 55
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 398 LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMF 447
L A G V + + +GA ++ + D TP+HLA +G L+IV ++
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLL 55
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 150 DAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLM 205
D +G PLH A G + VE+ LK+GA ++ Q T ++ G D+ ++
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 87
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 393 EGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLM 446
+G PLH A G + VE+ LK+GA ++ Q T ++ G D+ ++
Sbjct: 34 DGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 87
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 332 DECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCS 382
D+ RIL+ + GA + +GY P+H AA+ + +EV L+ G +
Sbjct: 15 DDEVRILMAN-GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQ 64
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 37.0 bits (84), Expect = 0.034, Method: Composition-based stats.
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 12/113 (10%)
Query: 484 LIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGG 543
L + DL+ + +PL+LAA + L+ + A++ D ++ LH
Sbjct: 1 LRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALH------- 53
Query: 544 GHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLL 596
+A V V L+ GA +++NN E+PL LAAR G Y T K LL
Sbjct: 54 -----WAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLL 101
Score = 30.0 bits (66), Expect = 3.8, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 36/66 (54%)
Query: 458 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTL 517
+N+ D + LH AA + D L+ GA+ ++ + ++ +PL LAA G ++T L
Sbjct: 41 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVL 100
Query: 518 VRNKAN 523
+ + AN
Sbjct: 101 LDHFAN 106
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%)
Query: 458 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTL 517
+N T PLH AA + +++++L+ +GAD+N DK +PLL A G V L
Sbjct: 33 VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLL 92
Query: 518 VRNKANILLK 527
+ A+ +K
Sbjct: 93 LSKGADKTVK 102
Score = 35.8 bits (81), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 217 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
+N T PLH AA + +++++L+ +GAD+N DK +PLL A G
Sbjct: 33 VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEG 84
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 5/93 (5%)
Query: 160 AVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNS 219
A+ GD V+ + G ++ P+H A G L+I+ + L+ ++ +N+
Sbjct: 14 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLL-LKGAD----INA 68
Query: 220 TDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNV 252
D +TPL A V+ L+ +GAD V
Sbjct: 69 PDKHHITPLLSAVYEGHVSCVKLLLSKGADKTV 101
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 5/93 (5%)
Query: 401 AVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNS 460
A+ GD V+ + G ++ P+H A G L+I+ + L+ ++ +N+
Sbjct: 14 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLL-LKGAD----INA 68
Query: 461 TDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNV 493
D +TPL A V+ L+ +GAD V
Sbjct: 69 PDKHHITPLLSAVYEGHVSCVKLLLSKGADKTV 101
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 14/116 (12%)
Query: 119 AAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAK 178
A KN ++ ++ GE + + E G PLH A G + +E L GA
Sbjct: 14 ALKNGDLDEVKDYVAKGEDVNRTLEG--------GRKPLHYAADCGQLEILEFLLLKGAD 65
Query: 179 ISTQQFDLSTPVHLACSQGALDIVRLMFN------LQPSEKLVCLNSTDAQKMTPL 228
I+ TP+ A +G + V+L+ + ++ + L +TD Q + L
Sbjct: 66 INAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKAL 121
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 14/116 (12%)
Query: 360 AAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAK 419
A KN ++ ++ GE + + E G PLH A G + +E L GA
Sbjct: 14 ALKNGDLDEVKDYVAKGEDVNRTLEG--------GRKPLHYAADCGQLEILEFLLLKGAD 65
Query: 420 ISTQQFDLSTPVHLACSQGALDIVRLMFN------LQPSEKLVCLNSTDAQKMTPL 469
I+ TP+ A +G + V+L+ + ++ + L +TD Q + L
Sbjct: 66 INAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKAL 121
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%)
Query: 458 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTL 517
+N T PLH AA + +++++L+ +GAD+N DK +PLL A G V L
Sbjct: 28 VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLL 87
Query: 518 VRNKANILLK 527
+ A+ +K
Sbjct: 88 LSKGADKTVK 97
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 217 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
+N T PLH AA + +++++L+ +GAD+N DK +PLL A G
Sbjct: 28 VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEG 79
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 14/116 (12%)
Query: 119 AAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAK 178
A KN ++ ++ GE + + E G PLH A G + +E L GA
Sbjct: 9 ALKNGDLDEVKDYVAKGEDVNRTLEG--------GRKPLHYAADCGQLEILEFLLLKGAD 60
Query: 179 ISTQQFDLSTPVHLACSQGALDIVRLMFN------LQPSEKLVCLNSTDAQKMTPL 228
I+ TP+ A +G + V+L+ + ++ + L L +TD Q + L
Sbjct: 61 INAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATDNQAIKAL 116
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 14/116 (12%)
Query: 360 AAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAK 419
A KN ++ ++ GE + + E G PLH A G + +E L GA
Sbjct: 9 ALKNGDLDEVKDYVAKGEDVNRTLEG--------GRKPLHYAADCGQLEILEFLLLKGAD 60
Query: 420 ISTQQFDLSTPVHLACSQGALDIVRLMFN------LQPSEKLVCLNSTDAQKMTPL 469
I+ TP+ A +G + V+L+ + ++ + L L +TD Q + L
Sbjct: 61 INAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATDNQAIKAL 116
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 5/93 (5%)
Query: 160 AVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNS 219
A+ GD V+ + G ++ P+H A G L+I+ + L+ ++ +N+
Sbjct: 9 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLL-LKGAD----INA 63
Query: 220 TDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNV 252
D +TPL A V+ L+ +GAD V
Sbjct: 64 PDKHHITPLLSAVYEGHVSCVKLLLSKGADKTV 96
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 5/93 (5%)
Query: 401 AVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNS 460
A+ GD V+ + G ++ P+H A G L+I+ + L+ ++ +N+
Sbjct: 9 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLL-LKGAD----INA 63
Query: 461 TDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNV 493
D +TPL A V+ L+ +GAD V
Sbjct: 64 PDKHHITPLLSAVYEGHVSCVKLLLSKGADKTV 96
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 35.8 bits (81), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 83/193 (43%), Gaps = 35/193 (18%)
Query: 434 ACSQGALDIVRLMFNLQPSEKLVCLNSTDA--QKMTPLHCAAMFDRCDVVQYLIDEGADL 491
AC L I + N +P LV TD Q + LH A V+ L++ GAD+
Sbjct: 73 ACIMPLLQIDKDSGNPKP---LVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV 129
Query: 492 NV------LDKEKRS-------PLLLAASRGGWKTVLTLVRNK---ANILLKDINRRNIL 535
++ K + + PL LAA W V L+ N A++ D +L
Sbjct: 130 HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVL 189
Query: 536 HLLVLNGGGHIKEFAEEVAA--VFLGENLINLGA----CINLKNNSNE---SPLHLAARY 586
H LV+ I + + E +A + + + L+ +GA + L+ SN +PL LAA+
Sbjct: 190 HALVM-----IADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKE 244
Query: 587 GRYNTVKKLLSSE 599
G+ + +L E
Sbjct: 245 GKIEIFRHILQRE 257
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 35.4 bits (80), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 82/193 (42%), Gaps = 35/193 (18%)
Query: 434 ACSQGALDIVRLMFNLQPSEKLVCLNSTDA--QKMTPLHCAAMFDRCDVVQYLIDEGADL 491
AC L I + N +P LV TD Q + LH A V+ L++ GAD+
Sbjct: 60 ACIMPLLQIDKDSGNPKP---LVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV 116
Query: 492 NV------LDKEKRS-------PLLLAASRGGWKTVLTLVRNK---ANILLKDINRRNIL 535
++ K + + PL LAA W V L+ N A++ D +L
Sbjct: 117 HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVL 176
Query: 536 HLLVLNGGGHIKEFAEEVAA--VFLGENLINLGACI-------NLKNNSNESPLHLAARY 586
H LV+ I + + E +A + + + L+ +GA + + N+ +PL LAA+
Sbjct: 177 HALVM-----IADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKE 231
Query: 587 GRYNTVKKLLSSE 599
G+ + +L E
Sbjct: 232 GKIEIFRHILQRE 244
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 157 LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMF 206
L A G V + + +GA ++ + + STP+HLA G L++V+L+
Sbjct: 10 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLL 59
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 398 LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMF 447
L A G V + + +GA ++ + + STP+HLA G L++V+L+
Sbjct: 10 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLL 59
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 566 GACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFH 625
GA + K+ + +PLHLAAR G VK LL E G+ +N D G T I+ G
Sbjct: 29 GADVAAKDKNGSTPLHLAARNGHLEVVKLLL--EAGAD-VNAQDKFGKTAFDISIDNGNE 85
Query: 626 YSVSIFQ 632
I Q
Sbjct: 86 DLAEILQ 92
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 185 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 244
DL + A G D VR++ + + D TPLH AA +VV+ L+
Sbjct: 5 DLGKKLLEAARAGQDDEVRILM-----ANGADVAAKDKNGSTPLHLAARNGHLEVVKLLL 59
Query: 245 DEGADLNVLDKEKRSPLLLAASRG 268
+ GAD+N DK ++ ++ G
Sbjct: 60 EAGADVNAQDKFGKTAFDISIDNG 83
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 426 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 485
DL + A G D VR++ + + D TPLH AA +VV+ L+
Sbjct: 5 DLGKKLLEAARAGQDDEVRILM-----ANGADVAAKDKNGSTPLHLAARNGHLEVVKLLL 59
Query: 486 DEGADLNVLDKEKRSPLLLAASRG 509
+ GAD+N DK ++ ++ G
Sbjct: 60 EAGADVNAQDKFGKTAFDISIDNG 83
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 30/60 (50%)
Query: 146 ISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLM 205
++ D G+ PLH A G + V+L L++GA ++ Q T ++ G D+ ++
Sbjct: 32 VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%)
Query: 472 AAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINR 531
AA + D V+ L+ GAD+ DK +PL LAA G + V L+ A++ +D
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFG 72
Query: 532 RNILHLLVLNGGGHIKEF 549
+ + + NG + E
Sbjct: 73 KTAFDISIDNGNEDLAEI 90
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 394 GNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLM 446
G+ PLH A G + V+L L++GA ++ Q T ++ G D+ ++
Sbjct: 39 GSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 315 GGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQ 374
G + G+ L A DE RIL+ + GA + NG P+H AA+N + +++ L+
Sbjct: 3 GSDLGKKLLEAARAGQDDEV-RILMAN-GADVAAKDKNGSTPLHLAARNGHLEVVKLLLE 60
Query: 375 FGESI 379
G +
Sbjct: 61 AGADV 65
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 157 LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMF 206
L A G V + + +GA ++ + + STP+HLA G L++V+L+
Sbjct: 28 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLL 77
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 398 LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMF 447
L A G V + + +GA ++ + + STP+HLA G L++V+L+
Sbjct: 28 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLL 77
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%)
Query: 472 AAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINR 531
AA + D V+ L+ GAD+ DK +PL LAA G + V L+ A++ +D
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90
Query: 532 RNILHLLVLNGGGHIKEF 549
+ + + NG + E
Sbjct: 91 KTAFDISIDNGNEDLAEI 108
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 566 GACINLKNNSNESPLHLAARYGRYNTVKKLLSS 598
GA + K+ + +PLHLAAR G VK LL +
Sbjct: 47 GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEA 79
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 29/60 (48%)
Query: 146 ISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLM 205
++ D G+ PLH A G + V+L L++GA + Q T ++ G D+ ++
Sbjct: 50 VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 185 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 244
DL + A G D VR++ + + D TPLH AA +VV+ L+
Sbjct: 23 DLGKKLLEAARAGQDDEVRILM-----ANGADVAAKDKNGSTPLHLAARNGHLEVVKLLL 77
Query: 245 DEGADLNVLDK 255
+ GAD+ DK
Sbjct: 78 EAGADVXAQDK 88
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 426 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 485
DL + A G D VR++ + + D TPLH AA +VV+ L+
Sbjct: 23 DLGKKLLEAARAGQDDEVRILM-----ANGADVAAKDKNGSTPLHLAARNGHLEVVKLLL 77
Query: 486 DEGADLNVLDK 496
+ GAD+ DK
Sbjct: 78 EAGADVXAQDK 88
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 26/53 (49%)
Query: 394 GNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLM 446
G+ PLH A G + V+L L++GA + Q T ++ G D+ ++
Sbjct: 57 GSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 315 GGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQ 374
G + G+ L A DE RIL+ + GA + NG P+H AA+N + +++ L+
Sbjct: 21 GSDLGKKLLEAARAGQDDEV-RILMAN-GADVAAKDKNGSTPLHLAARNGHLEVVKLLLE 78
Query: 375 FGESI 379
G +
Sbjct: 79 AGADV 83
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 458 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTL 517
+N D+ PLH A + + + GADL D E R PL +A ++TL
Sbjct: 261 VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETAN-ADIVTL 319
Query: 518 VR 519
+R
Sbjct: 320 LR 321
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 22/48 (45%)
Query: 217 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLA 264
+N D+ PLH A + + + GADL D E R PL +A
Sbjct: 261 VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIA 308
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 458 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTL 517
+N D+ PLH A + + + GADL D E R PL +A ++TL
Sbjct: 261 VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETAN-ADIVTL 319
Query: 518 VR 519
+R
Sbjct: 320 LR 321
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 22/48 (45%)
Query: 217 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLA 264
+N D+ PLH A + + + GADL D E R PL +A
Sbjct: 261 VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIA 308
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 458 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTL 517
+N D+ PLH A + + + GADL D E R PL +A ++TL
Sbjct: 261 VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETAN-ADIVTL 319
Query: 518 VR 519
+R
Sbjct: 320 LR 321
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 22/48 (45%)
Query: 217 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLA 264
+N D+ PLH A + + + GADL D E R PL +A
Sbjct: 261 VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIA 308
>pdb|4FG9|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-320 In Complex With Atp
pdb|4FG9|B Chain B, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-320 In Complex With Atp
pdb|4FGB|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I Apo Form
Length = 320
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 55/138 (39%), Gaps = 29/138 (21%)
Query: 329 YDFDECARILVKDFGAS--------LKRAC-SNGYYPIHDAAKNASSKTMEVFLQFGESI 379
Y DE ++I++ DFG S L AC + GY A+ SK ++ + SI
Sbjct: 150 YSLDEDSKIMISDFGLSKMEDPGSVLSTACGTPGYVAPEVLAQKPYSKAVDCW-----SI 204
Query: 380 GCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGA 439
G +I+ G P + D K E LK+ +++ +P S A
Sbjct: 205 G-----VIAYILLCGYPPFYDE---NDAKLFEQILKA-------EYEFDSPYWDDISDSA 249
Query: 440 LDIVRLMFNLQPSEKLVC 457
D +R + P ++ C
Sbjct: 250 KDFIRHLMEKDPEKRFTC 267
>pdb|4FG8|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-315 In Complex With Atp
pdb|4FG8|B Chain B, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-315 In Complex With Atp
Length = 315
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 55/138 (39%), Gaps = 29/138 (21%)
Query: 329 YDFDECARILVKDFGAS--------LKRAC-SNGYYPIHDAAKNASSKTMEVFLQFGESI 379
Y DE ++I++ DFG S L AC + GY A+ SK ++ + SI
Sbjct: 150 YSLDEDSKIMISDFGLSKMEDPGSVLSTACGTPGYVAPEVLAQKPYSKAVDCW-----SI 204
Query: 380 GCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGA 439
G +I+ G P + D K E LK+ +++ +P S A
Sbjct: 205 G-----VIAYILLCGYPPFYDE---NDAKLFEQILKA-------EYEFDSPYWDDISDSA 249
Query: 440 LDIVRLMFNLQPSEKLVC 457
D +R + P ++ C
Sbjct: 250 KDFIRHLMEKDPEKRFTC 267
>pdb|1A06|A Chain A, Calmodulin-Dependent Protein Kinase From Rat
Length = 332
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 55/138 (39%), Gaps = 29/138 (21%)
Query: 329 YDFDECARILVKDFGAS--------LKRAC-SNGYYPIHDAAKNASSKTMEVFLQFGESI 379
Y DE ++I++ DFG S L AC + GY A+ SK ++ + SI
Sbjct: 150 YSLDEDSKIMISDFGLSKMEDPGSVLSTACGTPGYVAPEVLAQKPYSKAVDCW-----SI 204
Query: 380 GCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGA 439
G +I+ G P + D K E LK+ +++ +P S A
Sbjct: 205 G-----VIAYILLCGYPPFYDE---NDAKLFEQILKA-------EYEFDSPYWDDISDSA 249
Query: 440 LDIVRLMFNLQPSEKLVC 457
D +R + P ++ C
Sbjct: 250 KDFIRHLMEKDPEKRFTC 267
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 10/87 (11%)
Query: 152 EGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPS 211
EG LH+A+ G ++ V+ + +GA +++ TP+H C+ D V M +Q
Sbjct: 53 EGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLH--CAASCNDTVICMALVQHG 110
Query: 212 EKLVCLNSTDAQKMTPLHCAAMFDRCD 238
+ +D A F++CD
Sbjct: 111 AAIFATTLSDG--------ATAFEKCD 129
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 10/87 (11%)
Query: 393 EGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPS 452
EG LH+A+ G ++ V+ + +GA +++ TP+H C+ D V M +Q
Sbjct: 53 EGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLH--CAASCNDTVICMALVQHG 110
Query: 453 EKLVCLNSTDAQKMTPLHCAAMFDRCD 479
+ +D A F++CD
Sbjct: 111 AAIFATTLSDG--------ATAFEKCD 129
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 59/153 (38%), Gaps = 1/153 (0%)
Query: 464 QKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKAN 523
+ +T LH A +V +LI GA++N D +PL AAS + LV++ A
Sbjct: 53 EGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAA 112
Query: 524 ILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLA 583
I ++ + A +A V L+N GA L + S E L+
Sbjct: 113 IFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDELS 172
Query: 584 ARYGRYNTVKKLLSSERGSFIINESDG-EGLTP 615
R G TV + E + G EG P
Sbjct: 173 FREGESVTVLRRDGPEETDWWWAALHGQEGYVP 205
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
Query: 307 KDMIDILQGGEHGRTALHIAAIYDFDECARILVKDF----GASLKRACSNGYYPIHDAAK 362
K+M D Q E G TALH A A + DF GA++ S+G+ P+H AA
Sbjct: 42 KEMNDPSQPNEEGITALHNAIC-----GANYSIVDFLITAGANVNSPDSHGWTPLHCAAS 96
Query: 363 NASSKTMEVFLQFGESI 379
+ +Q G +I
Sbjct: 97 CNDTVICMALVQHGAAI 113
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 217 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGA 248
+NS D+ TPLHCAA + + L+ GA
Sbjct: 80 VNSPDSHGWTPLHCAASCNDTVICMALVQHGA 111
>pdb|4FG7|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-293 In Complex With Atp
Length = 293
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 55/138 (39%), Gaps = 29/138 (21%)
Query: 329 YDFDECARILVKDFGAS--------LKRAC-SNGYYPIHDAAKNASSKTMEVFLQFGESI 379
Y DE ++I++ DFG S L AC + GY A+ SK ++ + SI
Sbjct: 150 YSLDEDSKIMISDFGLSKMEDPGSVLSTACGTPGYVAPEVLAQKPYSKAVDCW-----SI 204
Query: 380 GCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGA 439
G +I+ G P + D K E LK+ +++ +P S A
Sbjct: 205 G-----VIAYILLCGYPPFYDE---NDAKLFEQILKA-------EYEFDSPYWDDISDSA 249
Query: 440 LDIVRLMFNLQPSEKLVC 457
D +R + P ++ C
Sbjct: 250 KDFIRHLMEKDPEKRFTC 267
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 225 MTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLA 264
+T LH AA + R +VV+ L++ GAD+ V D+ + L LA
Sbjct: 112 LTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 151
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 466 MTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLA 505
+T LH AA + R +VV+ L++ GAD+ V D+ + L LA
Sbjct: 112 LTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 151
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 317 EHGRTALHIAAIYDFDECARILVKDFGASLK-RACSNGYYPIHDAAKNASSKTMEVFLQF 375
E+GRTAL A D+C R+L + GA L R G +H AA + +E ++
Sbjct: 75 ENGRTALLFVAGLGSDKCVRLLA-EAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVEL 133
Query: 376 GESIGCSREEMIS 388
G I E ++
Sbjct: 134 GADIEVEDERGLT 146
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 32.7 bits (73), Expect = 0.59, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 225 MTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLA 264
+T LH AA + R +VV+ L++ GAD+ V D+ + L LA
Sbjct: 111 LTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 150
Score = 32.7 bits (73), Expect = 0.59, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 466 MTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLA 505
+T LH AA + R +VV+ L++ GAD+ V D+ + L LA
Sbjct: 111 LTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 150
Score = 32.3 bits (72), Expect = 0.75, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 317 EHGRTALHIAAIYDFDECARILVKDFGASL-KRACSNGYYPIHDAAKNASSKTMEVFLQF 375
E+GRTAL A D+C R+L + GA L R G +H AA + +E ++
Sbjct: 74 ENGRTALLFVAGLGSDKCVRLLA-EAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVEL 132
Query: 376 GESIGCSREEMIS 388
G I E ++
Sbjct: 133 GADIEVEDERGLT 145
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
Query: 284 KQAVLHLATELN---KVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVK 340
++ VLHLA ++ +P++ ++Q +D G TALH AA+Y+ +C ++L+K
Sbjct: 190 EELVLHLAVKVANQASLPLVDFIIQNGGHLDA--KAADGNTALHYAALYNQPDCLKLLLK 247
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Query: 32 KQAVLHLATELN---KVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILV 87
++ VLHLA ++ +P++ ++Q +D G TALH AA+Y+ +C ++L+
Sbjct: 190 EELVLHLAVKVANQASLPLVDFIIQNGGHLDA--KAADGNTALHYAALYNQPDCLKLLL 246
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 15/65 (23%)
Query: 284 KQAVLHLATEL-NKVPILLILLQYKDMIDILQGGEH-------GRTALHIAAIYDFDECA 335
++ VLHLA ++ N+ + L+ I+Q G H G TALH AA+Y+ +C
Sbjct: 171 EELVLHLAVKVANQASLPLVDF-------IIQNGGHLDAKAADGNTALHYAALYNQPDCL 223
Query: 336 RILVK 340
++L+K
Sbjct: 224 KLLLK 228
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 15/64 (23%)
Query: 32 KQAVLHLATEL-NKVPILLILLQYKDMIDILQGGEH-------GRTALHIAAIYDFDECA 83
++ VLHLA ++ N+ + L+ I+Q G H G TALH AA+Y+ +C
Sbjct: 171 EELVLHLAVKVANQASLPLVDF-------IIQNGGHLDAKAADGNTALHYAALYNQPDCL 223
Query: 84 RILV 87
++L+
Sbjct: 224 KLLL 227
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 78/192 (40%), Gaps = 33/192 (17%)
Query: 434 ACSQGALDIVRLMFNLQPSEKLVCLNSTD--AQKMTPLHCAAMFDRCDVVQYLIDEGADL 491
AC L I R N QP LV TD + + LH A V+ L++ GA++
Sbjct: 65 ACILPLLQIDRDSGNPQP---LVNAQCTDDYYRGHSALHIAIEKRSLQCVKLLVENGANV 121
Query: 492 NV------LDKEKRS-------PLLLAASRGGWKTVLTLVRNK---ANILLKDINRRNIL 535
+ K + + PL LAA W V L+ N A++ D +L
Sbjct: 122 HARACGRFFQKGQGTCFYFGELPLSLAACTKQWDVVSYLLENPHQPASLQATDSQGNTVL 181
Query: 536 HLLVLNGGGHIKEFAEEVAAVF-LGENLINLGACI-------NLKNNSNESPLHLAARYG 587
H LV AE +A V + L+ GA + +++N + +PL LAA+ G
Sbjct: 182 HALVXISDNS----AENIALVTSXYDGLLQAGARLCPTVQLEDIRNLQDLTPLKLAAKEG 237
Query: 588 RYNTVKKLLSSE 599
+ + +L E
Sbjct: 238 KIEIFRHILQRE 249
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 11/90 (12%)
Query: 1 MGLLSVQSDNKNKSRLIPSSSGVNTRILNNKKQAVLHLAT---ELNKVPILLILLQYKDM 57
GLL +D + + IP ++G + + LHLA + + I+ L+Q
Sbjct: 144 FGLLQAYADGVDLTEKIPLANG------HEPDETALHLAVRSVDRTSLHIVDFLVQNSGN 197
Query: 58 IDILQGGEHGRTALHIAAIYDFDECARILV 87
+D G G TALH + D EC ++L+
Sbjct: 198 LDKQTG--KGSTALHYCCLTDNAECLKLLL 225
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 285 QAVLHLAT---ELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKD 341
+ LHLA + + I+ L+Q +D G G TALH + D EC ++L++
Sbjct: 170 ETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTG--KGSTALHYCCLTDNAECLKLLLRG 227
Query: 342 FGASLKRACSNGYYPIHDAAKNASSKTMEVFL 373
AS++ A +G P+ D AK + E L
Sbjct: 228 -KASIEIANESGETPL-DIAKRLKHEHCEELL 257
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,348,768
Number of Sequences: 62578
Number of extensions: 753458
Number of successful extensions: 3724
Number of sequences better than 100.0: 120
Number of HSP's better than 100.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1705
Number of HSP's gapped (non-prelim): 1010
length of query: 641
length of database: 14,973,337
effective HSP length: 105
effective length of query: 536
effective length of database: 8,402,647
effective search space: 4503818792
effective search space used: 4503818792
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)