RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8763
(641 letters)
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 254 bits (652), Expect = 3e-78
Identities = 108/474 (22%), Positives = 178/474 (37%), Gaps = 68/474 (14%)
Query: 150 DAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQ 209
G PLH A G V+ L+ GA + + TP+H+A G ++ +
Sbjct: 11 GESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKY----- 65
Query: 210 PSEKLV----CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAA 265
L+ +N+ TPLHCAA ++V+ L++ A+ N+ +PL +AA
Sbjct: 66 ----LLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAA 121
Query: 266 SRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHI 325
G H+ +L LL+ + + G T LH+
Sbjct: 122 REG--------------------HVE-------TVLALLEKE--ASQACMTKKGFTPLHV 152
Query: 326 AAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREE 385
AA Y A +L+ + A A NG P+H A + + +++ L G S
Sbjct: 153 AAKYGKVRVAELLL-ERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSP--- 208
Query: 386 MISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRL 445
A G PLH A + L+ G + + TP+HLA +G ++V L
Sbjct: 209 -----AWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVAL 263
Query: 446 MFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLA 505
+ K N + +TPLH A V LI G ++ + +PL +A
Sbjct: 264 LL-----SKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVA 318
Query: 506 ASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINL 565
+ G K V L++++A++ K + LH G I L+
Sbjct: 319 SHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTL------------LLKN 366
Query: 566 GACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIA 619
GA N ++ +PL +A R G + L + + SD ++
Sbjct: 367 GASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETV 420
Score = 237 bits (608), Expect = 7e-72
Identities = 104/482 (21%), Positives = 177/482 (36%), Gaps = 71/482 (14%)
Query: 58 IDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIH 117
I GGE G T LH+A+ + L+ GAS + P+H
Sbjct: 5 ISGGGGGESGLTPLHVASFMGHLPIVKNLLQR------------GASPNVSNVKVETPLH 52
Query: 118 DAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGA 177
AA+ ++ + LQ ++ + PLH A G V+L L++ A
Sbjct: 53 MAARAGHTEVAKYLLQNKAK--------VNAKAKDDQTPLHCAARIGHTNMVKLLLENNA 104
Query: 178 KISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRC 237
+ TP+H+A +G ++ V + + S + TPLH AA + +
Sbjct: 105 NPNLATTAGHTPLHIAAREGHVETVLALLEKEAS-----QACMTKKGFTPLHVAAKYGKV 159
Query: 238 DVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKV 297
V + L++ A N K +PL +A +L
Sbjct: 160 RVAELLLERDAHPNAAGKNGLTPLHVAVHHN--------------------NLD------ 193
Query: 298 PILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPI 357
I+ +LL +G T LHIAA + E AR L+ +G S G P+
Sbjct: 194 -IVKLLLPRG--GSPHSPAWNGYTPLHIAAKQNQVEVARSLL-QYGGSANAESVQGVTPL 249
Query: 358 HDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSG 417
H AA+ ++ + + L + + G PLH G ++ +K G
Sbjct: 250 HLAAQEGHAEMVALLLSKQANGNLGNK--------SGLTPLHLVAQEGHVPVADVLIKHG 301
Query: 418 AKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDR 477
+ TP+H+A G + +V+ + + +N+ +PLH AA
Sbjct: 302 VMVDATTRMGYTPLHVASHYGNIKLVKFLL-----QHQADVNAKTKLGYSPLHQAAQQGH 356
Query: 478 CDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTV---LTLVRNKANILLKDINRRNI 534
D+V L+ GA N + + +PL +A G + + +L+ D +R +
Sbjct: 357 TDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSF 416
Query: 535 LH 536
Sbjct: 417 PE 418
Score = 235 bits (601), Expect = 8e-71
Identities = 107/406 (26%), Positives = 169/406 (41%), Gaps = 58/406 (14%)
Query: 218 NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNT 277
+TPLH A+ +V+ L+ GA NV + + +PL +AA G
Sbjct: 8 GGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAG--------- 58
Query: 278 RILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARI 337
H + LLQ K + + +T LH AA ++
Sbjct: 59 -----------HTE-------VAKYLLQNK--AKVNAKAKDDQTPLHCAARIGHTNMVKL 98
Query: 338 LVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLP 397
L+ + A+ A + G+ P+H AA+ +T+ L+ S C + +G P
Sbjct: 99 LL-ENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTK--------KGFTP 149
Query: 398 LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC 457
LH A G + EL L+ A + + TP+H+A LDIV+L+ S
Sbjct: 150 LHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS----- 204
Query: 458 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTL 517
+S TPLH AA ++ +V + L+ G N + +PL LAA G + V L
Sbjct: 205 PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALL 264
Query: 518 VRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNE 577
+ +AN L + + LHL+ GH+ VA + LI G ++
Sbjct: 265 LSKQANGNLGNKSGLTPLHLVAQE--GHV-----PVA-----DVLIKHGVMVDATTRMGY 312
Query: 578 SPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
+PLH+A+ YG VK LL + +N G +PLH A+++G
Sbjct: 313 TPLHVASHYGNIKLVKFLLQ--HQA-DVNAKTKLGYSPLHQAAQQG 355
Score = 183 bits (468), Expect = 8e-52
Identities = 84/377 (22%), Positives = 131/377 (34%), Gaps = 91/377 (24%)
Query: 247 GADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQY 306
G + +PL +A+ G HL I+ LLQ
Sbjct: 4 GISGGGGGESGLTPLHVASFMG--------------------HLP-------IVKNLLQR 36
Query: 307 KDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASS 366
T LH+AA E A+ L++ + A NA +
Sbjct: 37 G--ASPNVSNVKVETPLHMAARAGHTEVAKYLLQ-----------------NKAKVNAKA 77
Query: 367 KTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFD 426
K + PLH A G V+L L++ A +
Sbjct: 78 K-------------------------DDQTPLHCAARIGHTNMVKLLLENNANPNLATTA 112
Query: 427 LSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLID 486
TP+H+A +G ++ V + + S + TPLH AA + + V + L++
Sbjct: 113 GHTPLHIAAREGHVETVLALLEKEAS-----QACMTKKGFTPLHVAAKYGKVRVAELLLE 167
Query: 487 EGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHI 546
A N K +PL +A V L+ + N LH+ +
Sbjct: 168 RDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQ--NQV 225
Query: 547 KEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIIN 606
EVA +L+ G N ++ +PLHLAA+ G V LLS + + N
Sbjct: 226 -----EVA-----RSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLS--KQA-NGN 272
Query: 607 ESDGEGLTPLHIASKEG 623
+ GLTPLH+ ++EG
Sbjct: 273 LGNKSGLTPLHLVAQEG 289
Score = 129 bits (328), Expect = 1e-32
Identities = 49/170 (28%), Positives = 75/170 (44%), Gaps = 16/170 (9%)
Query: 459 NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLV 518
+TPLH A+ +V+ L+ GA NV + + +PL +AA G + L+
Sbjct: 8 GGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLL 67
Query: 519 RNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNES 578
+NKA + K + + LH GH + + L+ A NL + +
Sbjct: 68 QNKAKVNAKAKDDQTPLHCAARI--GHT-----NMV-----KLLLENNANPNLATTAGHT 115
Query: 579 PLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSV 628
PLH+AAR G TV LL + + +G TPLH+A+K G V
Sbjct: 116 PLHIAAREGHVETVLALLE--KEA-SQACMTKKGFTPLHVAAKYG-KVRV 161
Score = 101 bits (253), Expect = 6e-23
Identities = 46/232 (19%), Positives = 84/232 (36%), Gaps = 33/232 (14%)
Query: 20 SSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDF 79
G + + + LHLA + ++ +LL + + G + G T LH+ A
Sbjct: 233 QYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQ--ANGNLGNKSGLTPLHLVAQEGH 290
Query: 80 DECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIG 139
A +L+ G + GY P+H A+ + K ++ LQ +
Sbjct: 291 VPVADVLIKH------------GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVN 338
Query: 140 CSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGAL 199
G PLH A G V L LK+GA + D +TP+ +A G +
Sbjct: 339 AK--------TKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYI 390
Query: 200 DIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLN 251
+ ++ +++ + +D +M+ V ++D D
Sbjct: 391 SVTDVL--KVVTDETSFVLVSDKHRMSFPE---------TVDEILDVSEDEG 431
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 203 bits (519), Expect = 7e-60
Identities = 60/417 (14%), Positives = 125/417 (29%), Gaps = 82/417 (19%)
Query: 218 NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNT 277
+D + M +H AA + D V+ LI+ G + ++ + L LA
Sbjct: 14 IKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACK----------- 62
Query: 278 RILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARI 337
+ L ++ + HG+ +H+A + + +
Sbjct: 63 ---FGCVDTA-----KY--------LASVGEVHSL----WHGQKPIHLAVMANKTDLVVA 102
Query: 338 LVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLP 397
LV + G P + + E+ + +G
Sbjct: 103 LV-EGAKE------RGQMPESLLNECDEREVNEI--------------GSHVKHCKGQTA 141
Query: 398 LHSAVHGGD--FKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKL 455
LH V G + +++ ++ GA + + TP+ A + + LM + PS+
Sbjct: 142 LHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSS 201
Query: 456 VCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVL 515
+ L+ + Q + LH A + + DV ++ G D+N+ D E PL L+
Sbjct: 202 LRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTK 261
Query: 516 TLV-------------RNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENL 562
L+ N +L + + + EV + L
Sbjct: 262 ELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADP--SKQ-----EVL-----QLL 309
Query: 563 INLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIA 619
+ N+ + + L+ + + ++
Sbjct: 310 QEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLA--PSA-PVRTRSRSRARSSAVS 363
Score = 186 bits (475), Expect = 2e-53
Identities = 55/457 (12%), Positives = 125/457 (27%), Gaps = 100/457 (21%)
Query: 51 LLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACS 110
+ + ++ ++ + +H+AA + R L+ G S
Sbjct: 5 MTDFPK-LNRIKSDDENMEKIHVAARKGQTDEVRRLIET------------GVSPTIQNR 51
Query: 111 NGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVE 170
G +H A K T + GE G P+H AV V
Sbjct: 52 FGCTALHLACKFGCVDTAKYLASVGEVHS----------LWHGQKPIHLAVMANKTDLVV 101
Query: 171 LCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHC 230
++ + P L ++ + + + T LH
Sbjct: 102 ALVEGAKE------RGQMPESLLNECDEREVNEIG-----------SHVKHCKGQTALHW 144
Query: 231 AAMF--DRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVL 288
+ ++++ L+ GA DK +PL+ A
Sbjct: 145 CVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFR-------------------- 184
Query: 289 HLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKR 348
+ + +++ + K + + + G + LH A + ++++ A V + G +
Sbjct: 185 NREA----LDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFV-EMGIDVNM 239
Query: 349 ACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFK 408
+ P++ + + A + LQ F
Sbjct: 240 EDNEHTVPLYLSVRAAMVLLTKELLQ----------------------------KTDVFL 271
Query: 409 AVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTP 468
+G + + V A ++++L+ EKL + +
Sbjct: 272 IQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQ-----EKLDEVVRSLNTGAGG 326
Query: 469 LHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLA 505
V + + A + + + ++
Sbjct: 327 AVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAVS 363
Score = 185 bits (473), Expect = 3e-53
Identities = 57/402 (14%), Positives = 126/402 (31%), Gaps = 70/402 (17%)
Query: 150 DAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQ 209
D E +H A G V +++G + Q T +HLAC G +D +
Sbjct: 17 DDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKY----- 71
Query: 210 PSEKLV----CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAA 265
L + P+H A M ++ D+V L++ + + P L
Sbjct: 72 ----LASVGEVHSLWH--GQKPIHLAVMANKTDLVVALVEGAKERG------QMPESLLN 119
Query: 266 SRGGWKTNGVNTRILNNKKQAVLHLATELNK--VPILLILLQYKDMIDILQGGEHGRTAL 323
+ N + + + + K Q LH L + ++ IL+Q + T L
Sbjct: 120 ECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLG--ASPTAKDKADETPL 177
Query: 324 HIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSR 383
A + E +++ + + ++K
Sbjct: 178 MRAMEFRNREALDLMMDTVPSK------------SSLRLDYANK---------------- 209
Query: 384 EEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIV 443
+GN LH A+ ++ G ++ + + + P++L+ + +
Sbjct: 210 ---------QGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLT 260
Query: 444 RL------MFNLQ--PSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLD 495
+ +F +Q P + + + AA + +V+Q L ++ ++
Sbjct: 261 KELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSL 320
Query: 496 KEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHL 537
+ + + A + + +R +
Sbjct: 321 NTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAV 362
Score = 166 bits (422), Expect = 5e-46
Identities = 51/340 (15%), Positives = 107/340 (31%), Gaps = 62/340 (18%)
Query: 303 LLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAK 362
+ + ++ ++ + +H+AA + R L+ + G S G +H A K
Sbjct: 5 MTDFPK-LNRIKSDDENMEKIHVAARKGQTDEVRRLI-ETGVSPTIQNRFGCTALHLACK 62
Query: 363 NASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKIST 422
T + GE G P+H AV V ++ +
Sbjct: 63 FGCVDTAKYLASVGEVHS----------LWHGQKPIHLAVMANKTDLVVALVEGAKE--- 109
Query: 423 QQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMF--DRCDV 480
P L ++ + + + T LH + ++
Sbjct: 110 ---RGQMPESLLNECDEREVNEIG-----------SHVKHCKGQTALHWCVGLGPEYLEM 155
Query: 481 VQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLV-----RNKANILLKDINRRNIL 535
++ L+ GA DK +PL+ A + + ++ ++ + + + L
Sbjct: 156 IKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHL 215
Query: 536 HLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKL 595
H +L E+VA + +G +N+++N + PL+L+ R K+L
Sbjct: 216 HWAILIN--W-----EDVA-----MRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKEL 263
Query: 596 LSSERGSFI------------INESDGEGLTPLHIASKEG 623
L + + L + A+
Sbjct: 264 LQ--KTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPS 301
Score = 147 bits (374), Expect = 2e-39
Identities = 65/364 (17%), Positives = 118/364 (32%), Gaps = 59/364 (16%)
Query: 16 LIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAA 75
LI +GV+ I N LHLA + V L ++ + HG+ +H+A
Sbjct: 39 LI--ETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL----WHGQKPIHLAV 92
Query: 76 IYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFG 135
+ + + LV G P + + E+
Sbjct: 93 MANKTDLVVALVEG------------AKE------RGQMPESLLNECDEREVNEI----- 129
Query: 136 ESIGCSREEMISLFDAEGNLPLHSAVHGGD--FKAVELCLKSGAKISTQQFDLSTPVHLA 193
+ +G LH V G + +++ ++ GA + + TP+ A
Sbjct: 130 ---------GSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRA 180
Query: 194 CSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVL 253
+ + LM + PS+ + L+ + Q + LH A + + DV ++ G D+N+
Sbjct: 181 MEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNME 240
Query: 254 DKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNK-VPILLILLQYKDMIDI 312
D E PL L+ L L K L+ Y + +
Sbjct: 241 DNEHTVPLYLSVR--------------AAMVLLTKEL---LQKTDVFLIQACPYHNGTTV 283
Query: 313 LQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVF 372
L + AA E ++L + + R+ + G K A+ +
Sbjct: 284 LPDRVVWLDFVPAAADPSKQEVLQLLQEK-LDEVVRSLNTGAGGAVKRKKKAAPAVKRMK 342
Query: 373 LQFG 376
L
Sbjct: 343 LAPS 346
Score = 107 bits (270), Expect = 2e-25
Identities = 35/284 (12%), Positives = 78/284 (27%), Gaps = 45/284 (15%)
Query: 3 LLSVQSDNKNKSRLIPSSS-------GVNTRILNNKKQAVLHLATELNK--VPILLILLQ 53
L+ + + + + + + + + K Q LH L + ++ IL+Q
Sbjct: 103 LVE-GAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQ 161
Query: 54 YKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGY 113
+ T L A + E +++ P L A G
Sbjct: 162 LG--ASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKS-------SLRLDYANKQGN 212
Query: 114 YPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVEL-- 171
+H A F++ G + D E +PL+ +V +
Sbjct: 213 SHLHWAILINWEDVAMRFVEMGIDVNME--------DNEHTVPLYLSVRAAMVLLTKELL 264
Query: 172 -----------CLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNST 220
+G + + V A ++++L+ EKL + +
Sbjct: 265 QKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQ-----EKLDEVVRS 319
Query: 221 DAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLA 264
V + + A + + + ++
Sbjct: 320 LNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAVS 363
Score = 104 bits (262), Expect = 2e-24
Identities = 28/168 (16%), Positives = 49/168 (29%), Gaps = 29/168 (17%)
Query: 459 NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLV 518
+D + M +H AA + D V+ LI+ G + ++ + L LA G T L
Sbjct: 14 IKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLA 73
Query: 519 RNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNES 578
+ + +HL V+ ++ L+ +
Sbjct: 74 SVGEVH--SLWHGQKPIHLAVMAN--KT-----DLV-----VALVEGAK------ERGQM 113
Query: 579 PLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFHY 626
P L + + +G T LH G Y
Sbjct: 114 PESLLNECDEREVNEIG---------SHVKHCKGQTALHWCVGLGPEY 152
Score = 59.1 bits (144), Expect = 2e-09
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 559 GENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHI 618
G ++ N +H+AAR G+ + V++L+ G + G T LH+
Sbjct: 3 GSMTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIE--TGVS-PTIQNRFGCTALHL 59
Query: 619 ASKEG 623
A K G
Sbjct: 60 ACKFG 64
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 183 bits (467), Expect = 1e-52
Identities = 83/395 (21%), Positives = 140/395 (35%), Gaps = 60/395 (15%)
Query: 239 VVQYLIDEGADLNVLDKEKRSPLLLAASRGGWK-------TNGVNTRILNNKKQAVLHLA 291
L D A + + K+ LL AA G + VN + +K LHLA
Sbjct: 6 SALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLA 65
Query: 292 TELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACS 351
N+V I+ +LLQ+ D+ + G LH A Y E +L+K GA +
Sbjct: 66 AGYNRVRIVQLLLQHG--ADVHAKDKGGLVPLHNACSYGHYEVTELLLK-HGACVNAMDL 122
Query: 352 NGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVE 411
+ P+H+AA + + L G G + A + +
Sbjct: 123 WQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCH--------GKSAVDMAPTPELRERLT 174
Query: 412 LCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHC 471
K + + A + L V+ L+ T LHC
Sbjct: 175 YEFKGHS------------LLQAAREADLAKVKKTLALEIIN-----FKQPQSHETALHC 217
Query: 472 AAM---FDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKD 528
A R V + L+ +GA++N +K+ +PL +AA R + L ++ A + D
Sbjct: 218 AVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALD 277
Query: 529 INRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGR 588
+ LH L G H+ + L++ G+ ++ + + +
Sbjct: 278 SLGQTALHRAALAG--HL-----QTC-----RLLLSYGSDPSIISLQGFTAAQMGNE--- 322
Query: 589 YNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
V+++LS + SD + L ASK G
Sbjct: 323 --AVQQILSES---TPMRTSDVDY--RLLEASKAG 350
Score = 176 bits (450), Expect = 4e-50
Identities = 80/423 (18%), Positives = 138/423 (32%), Gaps = 82/423 (19%)
Query: 168 AVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTP 227
A++L AK + A G + + + V +++D +K TP
Sbjct: 7 ALDL-ADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLT----PLNVNCHASDGRKSTP 61
Query: 228 LHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAV 287
LH AA ++R +VQ L+ GAD++ DK PL A S +
Sbjct: 62 LHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACS--------------YGHYEVT 107
Query: 288 LHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLK 347
EL LL++ + T LH AA + E +L+ GA
Sbjct: 108 -----EL--------LLKHG--ACVNAMDLWQFTPLHEAASKNRVEVCSLLL-SHGADPT 151
Query: 348 RACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDF 407
+G + A + + +G+ L +A
Sbjct: 152 LVNCHGKSAVDMAPTPELRERLTYEF-------------------KGHSLLQAAREADLA 192
Query: 408 KAVELCLKSGAKISTQQFDLSTPVHLACSQG---ALDIVRLMFNLQPSEKLVCLNSTDAQ 464
K + L Q T +H A + + L+ K +N +
Sbjct: 193 KVKKT-LALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLR-----KGANVNEKNKD 246
Query: 465 KMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANI 524
MTPLH AA DV++ L GA +N LD ++ L AA G +T L+ ++
Sbjct: 247 FMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDP 306
Query: 525 LLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAA 584
+ + + E + +++ + + + L A+
Sbjct: 307 SIISLQGFTAAQM------------GNEAV-----QQILSESTPMRTSD--VDYRLLEAS 347
Query: 585 RYG 587
+ G
Sbjct: 348 KAG 350
Score = 172 bits (438), Expect = 2e-48
Identities = 89/458 (19%), Positives = 147/458 (32%), Gaps = 120/458 (26%)
Query: 64 GEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNA 123
GE G++AL +A D A + +AA++
Sbjct: 1 GEFGKSALDLA-------------------------DPSAKAVLTGEYKKDELLEAARSG 35
Query: 124 SSK-TMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQ 182
+ + M + + S D + PLH A + V+L L+ GA + +
Sbjct: 36 NEEKLMALLTPLNVNCHAS--------DGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAK 87
Query: 183 QFDLSTPVHLACSQGALDIVRLMFNLQPSEKLV----CLNSTDAQKMTPLHCAAMFDRCD 238
P+H ACS G ++ L L+ C+N+ D + TPLH AA +R +
Sbjct: 88 DKGGLVPLHNACSYGHYEVTEL---------LLKHGACVNAMDLWQFTPLHEAASKNRVE 138
Query: 239 VVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVP 298
V L+ GAD +++ +S + +A + K ++L A E +
Sbjct: 139 VCSLLLSHGADPTLVNCHGKSAVDMAPTPE-----LRERLTYEFKGHSLLQAAREADLAK 193
Query: 299 ILLILLQYKDMIDILQGGEHGRTALHIAAI---YDFDECARILVKDFGASLKRACSNGYY 355
+ L + TALH A + A +L++
Sbjct: 194 VKKTLALEIINFK---QPQSHETALHCAVASLHPKRKQVAELLLR--------------- 235
Query: 356 PIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLK 415
A N +K + PLH A +E+ K
Sbjct: 236 --KGANVNEKNK-------------------------DFMTPLHVAAERAHNDVMEVLHK 268
Query: 416 SGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC----LNSTDAQKMTPLHC 471
GAK++ T +H A G L RL L+ + Q T
Sbjct: 269 HGAKMNALDSLGQTALHRAALAGHLQTCRL---------LLSYGSDPSIISLQGFTAAQM 319
Query: 472 AAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 509
+ VQ ++ E + D + LL A+ G
Sbjct: 320 GN-----EAVQQILSESTPMRTSDVD--YRLLEASKAG 350
Score = 137 bits (348), Expect = 6e-36
Identities = 70/353 (19%), Positives = 121/353 (34%), Gaps = 58/353 (16%)
Query: 20 SSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDF 79
VN + +K LHLA N+V I+ +LLQ+ D+ + G LH A Y
Sbjct: 46 PLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHG--ADVHAKDKGGLVPLHNACSYGH 103
Query: 80 DECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIG 139
E +L+ GA + + P+H+AA + + L G
Sbjct: 104 YEVTELLLKH------------GACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPT 151
Query: 140 CSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGAL 199
+ G + A + + K + + A + L
Sbjct: 152 LV--------NCHGKSAVDMAPTPELRERLTYEFKGHS------------LLQAAREADL 191
Query: 200 DIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAM---FDRCDVVQYLIDEGADLNVLDKE 256
V+ L+ T LHCA R V + L+ +GA++N +K+
Sbjct: 192 AKVKKTLALEIIN-----FKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKD 246
Query: 257 KRSPLLLAASRGGWKT------NGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMI 310
+PL +AA R +G L++ Q LH A + +LL Y
Sbjct: 247 FMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYG--S 304
Query: 311 DILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKN 363
D G TA + E + ++ + ++ + + Y + +A+K
Sbjct: 305 DPSIISLQGFTAAQMGN-----EAVQQILSE-STPMRTS--DVDYRLLEASKA 349
Score = 126 bits (319), Expect = 4e-32
Identities = 48/234 (20%), Positives = 83/234 (35%), Gaps = 32/234 (13%)
Query: 397 PLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLV 456
L +A G + K + L STP+HLA + IV+L+ +
Sbjct: 28 LLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLL-----QHGA 82
Query: 457 CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLT 516
+++ D + PLH A + +V + L+ GA +N +D + +PL AAS+ +
Sbjct: 83 DVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSL 142
Query: 517 LVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSN 576
L+ + A+ L + + ++ + + E +
Sbjct: 143 LLSHGADPTLVNCHGKSAVDMAPTPE--LR-----ERL-----TYEFKGHS--------- 181
Query: 577 ESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSI 630
L AAR VKK L+ E I + T LH A +
Sbjct: 182 ---LLQAAREADLAKVKKTLALEI---INFKQPQSHETALHCAVASLHPKRKQV 229
Score = 105 bits (265), Expect = 6e-25
Identities = 51/264 (19%), Positives = 86/264 (32%), Gaps = 40/264 (15%)
Query: 20 SSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDF 79
G ++ + LH A N+V + +LL + D HG++A+ +A +
Sbjct: 112 KHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHG--ADPTLVNCHGKSAVDMAPTPEL 169
Query: 80 DECARILVSEQP------ECDWIMVKDF---GASLKRACSNGYYPIHDAAKNASSKTMEV 130
E E D VK + + +H A + K +V
Sbjct: 170 RERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQV 229
Query: 131 --FLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLST 188
L G + ++ + + PLH A +E+ K GAK++ T
Sbjct: 230 AELLL---RKGAN----VNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQT 282
Query: 189 PVHLACSQGALDIVRLMFNLQPSEKLVC----LNSTDAQKMTPLHCAAMFDRCDVVQYLI 244
+H A G L RL L+ + Q T + VQ ++
Sbjct: 283 ALHRAALAGHLQTCRL---------LLSYGSDPSIISLQGFTAAQMGN-----EAVQQIL 328
Query: 245 DEGADLNVLDKEKRSPLLLAASRG 268
E + D + LL A+ G
Sbjct: 329 SESTPMRTSDVD--YRLLEASKAG 350
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 161 bits (409), Expect = 3e-44
Identities = 69/436 (15%), Positives = 119/436 (27%), Gaps = 105/436 (24%)
Query: 174 KSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAM 233
+ K + A G + R N + P
Sbjct: 25 EKNRKNHQSITSSQHSLLEASYDGYIKRQR--------------NELQHYSLYPNPQGYG 70
Query: 234 FDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATE 293
+ + + E L A+ +
Sbjct: 71 NGNDFLGDFNHTNLQIPTEPEPESPIKLHTEAA--------------GSYA--------- 107
Query: 294 LNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNG 353
I + + ++I+ H RT LH A E + L+ K + G
Sbjct: 108 -----ITEPITRES--VNIIDP-RHNRTVLHWIASNSSAEKSEDLIVH---EAKECIAAG 156
Query: 354 YYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELC 413
A NA + N PL AV + V
Sbjct: 157 ------ADVNAMDC-------------------------DENTPLMLAVLARRRRLVAYL 185
Query: 414 LKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAA 473
+K+GA + + +H A + ++ M L ++ + D MT L A
Sbjct: 186 MKAGADPTIYNKSERSALHQAAANRDFGMMVYM--LNSTKLKGDIEELDRNGMTALMIVA 243
Query: 474 MF---DRCDVVQYLIDEGADLNVL--------DKEKRSPLLLAASRGGWKTVLTLVRNK- 521
D+ + L+++GA ++ + R+ L AA V LV K
Sbjct: 244 HNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKG 303
Query: 522 ANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLH 581
+N +D + + + L G I EV LI GA + + ++ +
Sbjct: 304 SNKDKQDEDGKTPIMLAAQEG--RI-----EVV-----MYLIQQGASVEAVDATDHTARQ 351
Query: 582 LAARYGRYNTVKKLLS 597
LA +N V
Sbjct: 352 LAQANNHHNIVDIFDR 367
Score = 156 bits (396), Expect = 2e-42
Identities = 62/319 (19%), Positives = 119/319 (37%), Gaps = 45/319 (14%)
Query: 319 GRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGES 378
+ +L A+ + + R ++ YP N + + +
Sbjct: 37 SQHSLLEASYDGYIKRQRNELQH----------YSLYPNPQGYGNGNDFLGDFNHTNLQI 86
Query: 379 IGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQG 438
E + LH+ G + E + I + + T +H S
Sbjct: 87 PTEPEPE--------SPIKLHTEAAG-SYAITEPITRESVNIIDPRHN-RTVLHWIASNS 136
Query: 439 ALDIVRLMFNLQPSEKLVC---LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLD 495
+ + + + E + +N+ D + TPL A + R +V YL+ GAD + +
Sbjct: 137 SAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYN 196
Query: 496 KEKRSPLLLAASRGGWKTVLTLVRNK---ANILLKDINRRNILHLLVLNGGGHIKEFAEE 552
K +RS L AA+ + ++ ++ + +I D N L ++ N G A+
Sbjct: 197 KSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKL 256
Query: 553 VAAVFLGENLINLGACINL--------KNNSNESPLHLAARYGRYNTVKKLLSSERGSFI 604
L+ GA ++ + + LH AA+ VK L+ E+GS
Sbjct: 257 ---------LVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVG-EKGS-N 305
Query: 605 INESDGEGLTPLHIASKEG 623
++ D +G TP+ +A++EG
Sbjct: 306 KDKQDEDGKTPIMLAAQEG 324
Score = 144 bits (365), Expect = 4e-38
Identities = 64/434 (14%), Positives = 125/434 (28%), Gaps = 84/434 (19%)
Query: 8 SDNKNKSRLIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHG 67
S N+ + R + ++S + N +K H + ++ +L + +
Sbjct: 2 SGNRTRKRRMINASVWMPPMENEEKNRKNHQSITSSQHSLLEASYDGYIKRQRNELQHYS 61
Query: 68 RTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKT 127
D + +
Sbjct: 62 LYPNPQGYGNGNDFLGDFNHT----------------------------NLQIPTEP--- 90
Query: 128 MEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLS 187
+ E + LH+ G + E + I + +
Sbjct: 91 ----------------------EPESPIKLHTEAA-GSYAITEPITRESVNIIDPRHN-R 126
Query: 188 TPVHLACSQGALDIVRLMFNLQPSEKLVC---LNSTDAQKMTPLHCAAMFDRCDVVQYLI 244
T +H S + + + + E + +N+ D + TPL A + R +V YL+
Sbjct: 127 TVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLM 186
Query: 245 DEGADLNVLDKEKRSPLLLAASRG---------GWKTNGVNTRILNNKKQAVLHLATELN 295
GAD + +K +RS L AA+ + L+ L +
Sbjct: 187 KAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNE 246
Query: 296 ---KVPILLILLQY------KDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASL 346
+V +L++ GRTALH AA + LV + G++
Sbjct: 247 GRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNK 306
Query: 347 KRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGD 406
+ +G PI AA+ + + + G S E + A + A
Sbjct: 307 DKQDEDGKTPIMLAAQEGRIEVVMYLI----QQGASVEAV----DATDHTARQLAQANNH 358
Query: 407 FKAVELCLKSGAKI 420
V++ + +
Sbjct: 359 HNIVDIFDRCRPER 372
Score = 128 bits (323), Expect = 2e-32
Identities = 44/257 (17%), Positives = 76/257 (29%), Gaps = 36/257 (14%)
Query: 382 SREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALD 441
+ L A + G K L+ + P G
Sbjct: 25 EKNRKNHQSITSSQHSLLEASYDGYIKRQRNELQHYSL---------YPNPQGYGNGNDF 75
Query: 442 IVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSP 501
+ L + + LH A + + + E ++ + R+
Sbjct: 76 LGDFNHT-----NLQIPTEPEPESPIKLHTEAA-GSYAITEPITRESVNIID-PRHNRTV 128
Query: 502 LLLAASRGGWKTVLTLVRNKANILLK---DINRRNI-----LHLLVLNGGGHIKEFAEEV 553
L AS + L+ ++A + D+N + L L VL +
Sbjct: 129 LHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLAR--RR-----RL 181
Query: 554 AAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGL 613
L+ GA + N S S LH AA + + +L+S + I E D G+
Sbjct: 182 V-----AYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGM 236
Query: 614 TPLHIASKEGFHYSVSI 630
T L I + V+
Sbjct: 237 TALMIVAHNEGRDQVAS 253
Score = 40.7 bits (96), Expect = 0.001
Identities = 9/66 (13%), Positives = 15/66 (22%), Gaps = 12/66 (18%)
Query: 566 GACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFH 625
+ S++ L A+ G + NE L P G
Sbjct: 27 NRKNHQSITSSQHSLLEASYDGYIKRQR------------NELQHYSLYPNPQGYGNGND 74
Query: 626 YSVSIF 631
+
Sbjct: 75 FLGDFN 80
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 157 bits (400), Expect = 1e-43
Identities = 63/410 (15%), Positives = 113/410 (27%), Gaps = 131/410 (31%)
Query: 217 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVN 276
+ DA++ ++ + + V + + L A S
Sbjct: 1 MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDD-GAVFLAACS---------- 49
Query: 277 TRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECAR 336
+ + VL LL+ DI G TALH A I D + +
Sbjct: 50 ----SGDTEEVL-------------RLLERG--ADINYANVDGLTALHQACIDDNVDMVK 90
Query: 337 ILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNL 396
LV+ + A N EG +
Sbjct: 91 FLVE-----------------NGANINQPDN-------------------------EGWI 108
Query: 397 PLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLV 456
PLH+A G E + GA + + TP+ +A + ++++
Sbjct: 109 PLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNE---------- 158
Query: 457 CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLT 516
+N D Q+L + K + L +AA++G
Sbjct: 159 -VNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKG------- 210
Query: 517 LVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSN 576
+ EV + LI +N+K+
Sbjct: 211 -------------------YT--------------EVL-----KLLIQARYDVNIKDYDG 232
Query: 577 ESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFHY 626
+PLH AA +G+ + L+ + + G T +A ++ Y
Sbjct: 233 WTPLHAAAHWGKEEACRILVE--NLC-DMEAVNKVGQTAFDVADEDILGY 279
Score = 132 bits (334), Expect = 2e-34
Identities = 58/388 (14%), Positives = 113/388 (29%), Gaps = 104/388 (26%)
Query: 115 PIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLK 174
S +E + + + +A GD + V L+
Sbjct: 11 NEQLKRWIGSETDLEPPVVKRKKTKV---------KFDDGAVFLAACSSGDTEEVLRLLE 61
Query: 175 SGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLV----CLNSTDAQKMTPLHC 230
GA I+ D T +H AC +D+V+ LV +N D + PLH
Sbjct: 62 RGADINYANVDGLTALHQACIDDNVDMVKF---------LVENGANINQPDNEGWIPLHA 112
Query: 231 AAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHL 290
AA D+ +YLI +GA + ++ E +PL +A ++ + +
Sbjct: 113 AASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEE--------------EAMEELLQNE 158
Query: 291 ATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRAC 350
+ + G A + + L
Sbjct: 159 ---------------------VNRQGVDIEAARKEEERIMLRDARQWLNS---------- 187
Query: 351 SNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAV 410
+K+ G LH A G + +
Sbjct: 188 -------GHINDVRHAKS-------------------------GGTALHVAAAKGYTEVL 215
Query: 411 ELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLH 470
+L +++ ++ + +D TP+H A G + R++ E L + + + T
Sbjct: 216 KLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILV-----ENLCDMEAVNKVGQTAFD 270
Query: 471 CAAMFDRCDVVQYLIDEGADLNVLDKEK 498
A + + + + ++K
Sbjct: 271 VADEDILGYLEELQKKQNLLHSEKREKK 298
Score = 117 bits (295), Expect = 2e-29
Identities = 60/321 (18%), Positives = 103/321 (32%), Gaps = 63/321 (19%)
Query: 20 SSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDF 79
T++ AV A +L LL+ DI G TALH A I D
Sbjct: 29 VKRKKTKV-KFDDGAVFLAACSSGDTEEVLRLLERG--ADINYANVDGLTALHQACIDDN 85
Query: 80 DECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIG 139
+ + LV GA++ + + G+ P+H AA E + G +G
Sbjct: 86 VDMVKFLVEN------------GANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVG 133
Query: 140 CSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGAL 199
++EG+ PL A + ++ + D+
Sbjct: 134 AV--------NSEGDTPLDIAEEEAMEELLQNEVNRQGV------DIEAARKEEERIMLR 179
Query: 200 DIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRS 259
D + + + + T LH AA +V++ LI D+N+ D + +
Sbjct: 180 DARQWLNSGHIN-----DVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWT 234
Query: 260 PLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHG 319
PL AA K++A + L++ D+ + G
Sbjct: 235 PLHAAAH--------------WGKEEAC-----RI--------LVENL--CDMEAVNKVG 265
Query: 320 RTALHIAAIYDFDECARILVK 340
+TA +A + K
Sbjct: 266 QTAFDVADEDILGYLEELQKK 286
Score = 88.7 bits (221), Expect = 1e-19
Identities = 44/259 (16%), Positives = 86/259 (33%), Gaps = 42/259 (16%)
Query: 20 SSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDF 79
G + N LH A + V ++ L++ +I Q G LH AA +
Sbjct: 61 ERGADINYANVDGLTALHQACIDDNVDMVKFLVENG--ANINQPDNEGWIPLHAAASCGY 118
Query: 80 DECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVF-------- 131
+ A L+S+ GA + S G P+ A + A + ++
Sbjct: 119 LDIAEYLISQ------------GAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDI 166
Query: 132 ---LQFGESIGCSREEMISLF----------DAEGNLPLHSAVHGGDFKAVELCLKSGAK 178
+ E I + G LH A G + ++L +++
Sbjct: 167 EAARKEEERIML--RDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD 224
Query: 179 ISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCD 238
++ + +D TP+H A G + R++ E L + + + T A
Sbjct: 225 VNIKDYDGWTPLHAAAHWGKEEACRILV-----ENLCDMEAVNKVGQTAFDVADEDILGY 279
Query: 239 VVQYLIDEGADLNVLDKEK 257
+ + + + ++K
Sbjct: 280 LEELQKKQNLLHSEKREKK 298
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 156 bits (396), Expect = 2e-43
Identities = 50/279 (17%), Positives = 102/279 (36%), Gaps = 30/279 (10%)
Query: 319 GRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGES 378
+ +H AAI+ R L+ G ++ ++ P+H+A +++ L+ G
Sbjct: 3 DWSPMHEAAIHGHQLSLRNLI-SQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ 61
Query: 379 IGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQG 438
+ + + PL +A G + V L L+ GA + + DL++P+H A +G
Sbjct: 62 VNGVTAD--------WHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRG 112
Query: 439 ALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEK 498
++ V + ++ + TPL+ A + V+ L++ GAD+N K +
Sbjct: 113 HVECVNSLI-----AYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQ 166
Query: 499 RSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFL 558
SPL A + L+ A+ K+ + + L+ + +
Sbjct: 167 DSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPES--PLAQL--------- 215
Query: 559 GENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLS 597
+ +L + K +L
Sbjct: 216 ---FLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVLP 251
Score = 149 bits (380), Expect = 3e-41
Identities = 55/231 (23%), Positives = 88/231 (38%), Gaps = 30/231 (12%)
Query: 397 PLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLV 456
P+H A G ++ + G ++ D +P+H AC G L V++ L+
Sbjct: 6 PMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKI---------LL 56
Query: 457 C----LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWK 512
+N A TPL A + D V L+ GA + + + SP+ AA RG +
Sbjct: 57 KHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP-ESDLASPIHEAARRGHVE 115
Query: 513 TVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLK 572
V +L+ NI K + L+L N + L+ GA +N +
Sbjct: 116 CVNSLIAYGGNIDHKISHLGTPLYLACENQ--QR-----ACV-----KKLLESGADVN-Q 162
Query: 573 NNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
+SPLH AR L+ G+ + EG P+ + E
Sbjct: 163 GKGQDSPLHAVARTASEELACLLMD--FGA-DTQAKNAEGKRPVELVPPES 210
Score = 146 bits (370), Expect = 6e-40
Identities = 51/306 (16%), Positives = 107/306 (34%), Gaps = 55/306 (17%)
Query: 225 MTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKK 284
+P+H AA+ ++ LI +G +N++ + SPL A G
Sbjct: 4 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGG---------------- 47
Query: 285 QAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGA 344
HL+ + ILL++ + T L A + +C +L+ GA
Sbjct: 48 ----HLS-------CVKILLKHG--AQVNGVTADWHTPLFNACVSGSWDCVNLLL-QHGA 93
Query: 345 SLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHG 404
S++ S+ PIH+AA+ + + + +G +I + PL+ A
Sbjct: 94 SVQ-PESDLASPIHEAARRGHVECVNSLIAYGGNIDHK--------ISHLGTPLYLACEN 144
Query: 405 GDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLV----CLNS 460
V+ L+SGA ++ + +P+H + ++ L L+ +
Sbjct: 145 QQRACVKKLLESGADVNQGK-GQDSPLHAVARTASEELACL---------LMDFGADTQA 194
Query: 461 TDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRN 520
+A+ P+ + Q ++ +++ + + K ++
Sbjct: 195 KNAEGKRPVELVP--PESPLAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPE 252
Query: 521 KANILL 526
L
Sbjct: 253 DLKQFL 258
Score = 133 bits (338), Expect = 2e-35
Identities = 52/279 (18%), Positives = 108/279 (38%), Gaps = 37/279 (13%)
Query: 67 GRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSK 126
+ +H AAI+ R L+S+ G ++ ++ P+H+A
Sbjct: 3 DWSPMHEAAIHGHQLSLRNLISQ------------GWAVNIITADHVSPLHEACLGGHLS 50
Query: 127 TMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDL 186
+++ L+ G + A+ + PL +A G + V L L+ GA + + DL
Sbjct: 51 CVKILLKHGAQVNGV--------TADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DL 101
Query: 187 STPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDE 246
++P+H A +G ++ V + ++ + TPL+ A + V+ L++
Sbjct: 102 ASPIHEAARRGHVECVNSLI-----AYGGNIDHKISHLGTPLYLACENQQRACVKKLLES 156
Query: 247 GADLNVLDKEKRSPLLLAASRGGWKT------NGVNTRILNNKKQAVLHLATELNKVPIL 300
GAD+N K + SPL A + G +T+ N + + + L + P+
Sbjct: 157 GADVNQ-GKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPES--PLA 213
Query: 301 LILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILV 339
+ L+ + I + ++++
Sbjct: 214 QLFLERE--GPPSLMQLCRLRIRKCFGIQQHHKITKLVL 250
Score = 129 bits (327), Expect = 6e-34
Identities = 64/315 (20%), Positives = 107/315 (33%), Gaps = 67/315 (21%)
Query: 111 NGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVE 170
+ + P+H+AA + ++ + G ++ A+ PLH A GG V+
Sbjct: 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNII--------TADHVSPLHEACLGGHLSCVK 53
Query: 171 LCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNS------TDAQK 224
+ LK GA+++ D TP+ AC G+ D V L L ++
Sbjct: 54 ILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNL------------LLQHGASVQPESDL 101
Query: 225 MTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKK 284
+P+H AA + V LI G +++ +PL LA
Sbjct: 102 ASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQ---------------- 145
Query: 285 QAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGA 344
A + LL+ ++ G+ + LH A +E A +L+ DFGA
Sbjct: 146 ----QRA-------CVKKLLESGADVNQ---GKGQDSPLHAVARTASEELACLLM-DFGA 190
Query: 345 SLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHG 404
+ + G P+ S ++FL+ SL
Sbjct: 191 DTQAKNAEGKRPVELVPPE--SPLAQLFLEREGP--------PSLMQLCRLRIRKCFGIQ 240
Query: 405 GDFKAVELCLKSGAK 419
K +L L K
Sbjct: 241 QHHKITKLVLPEDLK 255
Score = 126 bits (320), Expect = 5e-33
Identities = 46/195 (23%), Positives = 81/195 (41%), Gaps = 22/195 (11%)
Query: 429 TPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEG 488
+P+H A G +R + + +N A ++PLH A + V+ L+ G
Sbjct: 5 SPMHEAAIHGHQLSLRNLI-----SQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHG 59
Query: 489 ADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKE 548
A +N + + +PL A G W V L+++ A++ + + + +H GH
Sbjct: 60 AQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARR--GH--- 113
Query: 549 FAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINES 608
E +LI G I+ K + +PL+LA + VKKLL G+ +
Sbjct: 114 --VECV-----NSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLE--SGADV--NQ 162
Query: 609 DGEGLTPLHIASKEG 623
+PLH ++
Sbjct: 163 GKGQDSPLHAVARTA 177
Score = 116 bits (294), Expect = 2e-29
Identities = 36/158 (22%), Positives = 66/158 (41%), Gaps = 16/158 (10%)
Query: 466 MTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANIL 525
+P+H AA+ ++ LI +G +N++ + SPL A G V L+++ A +
Sbjct: 4 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 63
Query: 526 LKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAAR 585
+ L ++ G + L+ GA + +++ SP+H AAR
Sbjct: 64 GVTADWHTPLFNACVS--GSW-----DCV-----NLLLQHGASVQPESD-LASPIHEAAR 110
Query: 586 YGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
G V L++ G I+ TPL++A +
Sbjct: 111 RGHVECVNSLIA--YGG-NIDHKISHLGTPLYLACENQ 145
Score = 92.1 bits (230), Expect = 4e-21
Identities = 31/233 (13%), Positives = 68/233 (29%), Gaps = 39/233 (16%)
Query: 20 SSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDF 79
G + L A + +LLQ+ + + +H AA
Sbjct: 57 KHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP---ESDLASPIHEAARRGH 113
Query: 80 DECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIG 139
EC L++ G ++ S+ P++ A +N ++ L+ G +
Sbjct: 114 VECVNSLIAY------------GGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN 161
Query: 140 CSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGAL 199
+ PLH+ + L + GA + + PV L +
Sbjct: 162 Q---------GKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPES-- 210
Query: 200 DIVRLMFNLQPSEKLVC----LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGA 248
+ +L + + ++ C + + + ++ E
Sbjct: 211 PLAQL---------FLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPEDL 254
Score = 62.5 bits (153), Expect = 6e-11
Identities = 29/159 (18%), Positives = 49/159 (30%), Gaps = 25/159 (15%)
Query: 20 SSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDF 79
+ G N + L+LA E + + LL+ ++ G+ + LH A
Sbjct: 122 AYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ---GKGQDSPLHAVARTAS 178
Query: 80 DECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIG 139
+E A +L+ FGA + + G P+ S ++FL+
Sbjct: 179 EELACLLMD------------FGADTQAKNAEGKRPVELVPPE--SPLAQLFLEREGPP- 223
Query: 140 CSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAK 178
SL K +L L K
Sbjct: 224 -------SLMQLCRLRIRKCFGIQQHHKITKLVLPEDLK 255
Score = 52.8 bits (128), Expect = 9e-08
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 575 SNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
S+ SP+H AA +G +++ L+S +G +N + ++PLH A G
Sbjct: 2 SDWSPMHEAAIHGHQLSLRNLIS--QGW-AVNIITADHVSPLHEACLGG 47
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 154 bits (391), Expect = 2e-42
Identities = 66/287 (22%), Positives = 121/287 (42%), Gaps = 41/287 (14%)
Query: 352 NGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVE 411
+ + A +N ++ L+ G ++ EE G PLH+AV VE
Sbjct: 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEE-------GGWTPLHNAVQMSREDIVE 56
Query: 412 LCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC----LNSTDAQKMT 467
L L+ GA ++ + +TP LA G++ +++L + +N D T
Sbjct: 57 LLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKL---------FLSKGADVNECDFYGFT 107
Query: 468 PLHCAAMFDRCDVVQYLIDEGADLNVLDKEK----------RSPLLLAASRGGWKTVLTL 517
AA++ + +++L GA++N+ K K + L+ AA +G + + L
Sbjct: 108 AFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKIL 167
Query: 518 VRNK-ANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSN 576
+ A++ D RN L +L+ E + L++ GA +N++
Sbjct: 168 LDEMGADVNACDNMGRNALIHALLSSD---DSDVEAIT-----HLLLDHGADVNVRGERG 219
Query: 577 ESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
++PL LA V++LL E IN++D +G T L +A +
Sbjct: 220 KTPLILAVEKKHLGLVQRLLEQEHIE--INDTDSDGKTALLLAVELK 264
Score = 148 bits (377), Expect = 1e-40
Identities = 65/377 (17%), Positives = 115/377 (30%), Gaps = 114/377 (30%)
Query: 226 TPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQ 285
L A + D+VQ L++ GA++N ++E GGW
Sbjct: 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEE-----------GGW--------------- 40
Query: 286 AVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGAS 345
LH A ++++ I+ +LL++ D + ++G T +AAI + ++ +
Sbjct: 41 TPLHNAVQMSREDIVELLLRHG--ADPVLRKKNGATPFLLAAIAGSVKLLKLFLS----- 93
Query: 346 LKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGG 405
A N G A G
Sbjct: 94 ------------KGADVNECDF-------------------------YGFTAFMEAAVYG 116
Query: 406 DFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQK 465
KA++ K GA ++ ++
Sbjct: 117 KVKALKFLYKRGANVNLRRKTKEDQ----------------------------ERLRKGG 148
Query: 466 MTPLHCAAMFDRCDVVQYLIDE-GADLNVLDKEKRSPLLLAASRGGWKTVLTLVR----N 520
T L AA +V++ L+DE GAD+N D R+ L+ A V + +
Sbjct: 149 ATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH 208
Query: 521 KANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPL 580
A++ ++ + L L V H + L L IN ++ ++ L
Sbjct: 209 GADVNVRGERGKTPLILAVEKK--H-LGLVQ-----RL---LEQEHIEINDTDSDGKTAL 257
Query: 581 HLAARYGRYNTVKKLLS 597
LA + L
Sbjct: 258 LLAVELKLKKIAELLCK 274
Score = 147 bits (373), Expect = 4e-40
Identities = 70/356 (19%), Positives = 118/356 (33%), Gaps = 84/356 (23%)
Query: 150 DAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLS-TPVHLACSQGALDIVRLMFNL 208
E N L AV D V+ L+ GA ++ Q+ + TP+H A DIV L
Sbjct: 2 AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVEL---- 57
Query: 209 QPSEKLV----CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLA 264
L+ TP AA+ +++ + +GAD+N D + + A
Sbjct: 58 -----LLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEA 112
Query: 265 ASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILL-----ILLQYKDMIDILQGGEHG 319
A G + + L + L+ K D + + G
Sbjct: 113 AVYG--------------------KVKA----LKFLYKRGANVNLRRKTKEDQERLRKGG 148
Query: 320 RTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESI 379
TAL AA E +IL+ + GA + + G + A ++ +E
Sbjct: 149 ATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAI------- 201
Query: 380 GCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGA 439
L L GA ++ + TP+ LA +
Sbjct: 202 ------------------------------THLLLDHGADVNVRGERGKTPLILAVEKKH 231
Query: 440 LDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLD 495
L +V+ + ++ + +N TD+ T L A + + L GA + D
Sbjct: 232 LGLVQRLL----EQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283
Score = 124 bits (315), Expect = 4e-32
Identities = 69/327 (21%), Positives = 118/327 (36%), Gaps = 69/327 (21%)
Query: 29 NNKKQAVLHLATELNKVPILLILLQYKDMIDI-LQGGEHGRTALHIAAIYDFDECARILV 87
+ +L A + V ++ LL+ ++ Q E G T LH A ++ +L+
Sbjct: 2 AVEDNHLLIKAVQNEDVDLVQQLLEGG--ANVNFQEEEGGWTPLHNAVQMSREDIVELLL 59
Query: 88 SEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMIS 147
GA NG P AA S K +++FL G +
Sbjct: 60 RH------------GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNEC------ 101
Query: 148 LFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLS----------TPVHLACSQG 197
D G A G KA++ K GA ++ ++ T + A +G
Sbjct: 102 --DFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG 159
Query: 198 ALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMF----DRCDVVQYLIDEGADLNVL 253
+++++++ E +N+ D L A + D + L+D GAD+NV
Sbjct: 160 HVEVLKILL----DEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVR 215
Query: 254 DKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDIL 313
+ ++PL+LA + HL V LL ++ I+I
Sbjct: 216 GERGKTPLILAVEKK--------------------HLGL----VQRLLE----QEHIEIN 247
Query: 314 QGGEHGRTALHIAAIYDFDECARILVK 340
G+TAL +A + A +L K
Sbjct: 248 DTDSDGKTALLLAVELKLKKIAELLCK 274
Score = 100 bits (251), Expect = 1e-23
Identities = 46/241 (19%), Positives = 85/241 (35%), Gaps = 23/241 (9%)
Query: 20 SSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDF 79
G + + LA V +L + L D+ + +G TA AA+Y
Sbjct: 60 RHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKG--ADVNECDFYGFTAFMEAAVYGK 117
Query: 80 DECARILVSEQPECDWIMVKD-FGASLKRACSNGYYPIHDAAKNASSKTMEVFL-QFGES 137
+ + L + ++ +R G + DAA+ + +++ L + G
Sbjct: 118 VKALKFLYKRGAN---VNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD 174
Query: 138 IGCSREEMISLFDAEGNLPLHSAVHGGDFKA----VELCLKSGAKISTQQFDLSTPVHLA 193
+ D G L A+ D L L GA ++ + TP+ LA
Sbjct: 175 VNAC--------DNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILA 226
Query: 194 CSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVL 253
+ L +V+ + ++ + +N TD+ T L A + + L GA +
Sbjct: 227 VEKKHLGLVQRLL----EQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG 282
Query: 254 D 254
D
Sbjct: 283 D 283
Score = 81.4 bits (202), Expect = 4e-17
Identities = 32/130 (24%), Positives = 48/130 (36%), Gaps = 16/130 (12%)
Query: 495 DKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNI-LHLLVLNGGGHIKEFAEEV 553
E L+ A V L+ AN+ ++ LH V E++
Sbjct: 2 AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQM--SR-----EDI 54
Query: 554 AAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGL 613
E L+ GA L+ + +P LAA G +K LS +G+ +NE D G
Sbjct: 55 V-----ELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLS--KGA-DVNECDFYGF 106
Query: 614 TPLHIASKEG 623
T A+ G
Sbjct: 107 TAFMEAAVYG 116
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 152 bits (386), Expect = 6e-42
Identities = 62/393 (15%), Positives = 104/393 (26%), Gaps = 128/393 (32%)
Query: 231 AAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHL 290
+ L+ G+ + +D KQ +
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMASMDG----------------------------KQGGMDG 33
Query: 291 ATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRAC 350
+ I L ++ + +H AAI+ R L+
Sbjct: 34 SKPAGPRDFPGIRLLSNP---LMGDAVSDWSPMHEAAIHGHQLSLRNLIS---------- 80
Query: 351 SNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAV 410
A N + + PLH A GG V
Sbjct: 81 -------QGWAVNIITA-------------------------DHVSPLHEACLGGHLSCV 108
Query: 411 ELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLH 470
++ LK GA+++ D TP+ AC G+ D V L+ + + +P+H
Sbjct: 109 KILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLL-----QHGASVQPES-DLASPIH 162
Query: 471 CAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDIN 530
AA + V LI G +++ +PL LA
Sbjct: 163 EAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQ--------------------- 201
Query: 531 RRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYN 590
+ L+ GA +N + +SPLH R
Sbjct: 202 -----QR--------------ACV-----KKLLESGADVN-QGKGQDSPLHAVVRTASEE 236
Query: 591 TVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
L+ G+ + EG P+ + E
Sbjct: 237 LACLLMD--FGA-DTQAKNAEGKRPVELVPPES 266
Score = 143 bits (362), Expect = 1e-38
Identities = 59/342 (17%), Positives = 112/342 (32%), Gaps = 71/342 (20%)
Query: 160 AVHGGDFKAVELCLKSGAKISTQ-----QFDLSTPVHLACSQGALDIVRLMFNLQPSEKL 214
+ G+ +++ D S P G +
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNP---------- 51
Query: 215 VCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNG 274
L +P+H AA+ ++ LI +G +N++ + SPL A G
Sbjct: 52 --LMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGG------ 103
Query: 275 VNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDEC 334
HL+ + ILL++ + T L A + +C
Sbjct: 104 --------------HLS-------CVKILLKHG--AQVNGVTADWHTPLFNACVSGSWDC 140
Query: 335 ARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEG 394
+L+ GAS++ S+ PIH+AA+ + + + +G +I
Sbjct: 141 VNLLL-QHGASVQPE-SDLASPIHEAARRGHVECVNSLIAYGGNIDHKISH--------L 190
Query: 395 NLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEK 454
PL+ A V+ L+SGA ++ + +P+H + ++ L
Sbjct: 191 GTPLYLACENQQRACVKKLLESGADVNQGK-GQDSPLHAVVRTASEELACL--------- 240
Query: 455 LV----CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLN 492
L+ + +A+ P+ + +L EGA L
Sbjct: 241 LMDFGADTQAKNAEGKRPVELVPPESPLAQL-FLEREGASLP 281
Score = 121 bits (306), Expect = 6e-31
Identities = 67/358 (18%), Positives = 111/358 (31%), Gaps = 98/358 (27%)
Query: 16 LIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAA 75
L+P S + + + KQ + + I L ++ + +H AA
Sbjct: 14 LVPRGSHMASM---DGKQGGMDGSKPAGPRDFPGIRLLSNP---LMGDAVSDWSPMHEAA 67
Query: 76 IYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFG 135
I+ R L+S A N
Sbjct: 68 IHGHQLSLRNLIS----------------------------QGWAVNII----------- 88
Query: 136 ESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACS 195
A+ PLH A GG V++ LK GA+++ D TP+ AC
Sbjct: 89 --------------TADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACV 134
Query: 196 QGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDK 255
G+ D V L+ + + +P+H AA + V LI G +++
Sbjct: 135 SGSWDCVNLLL-----QHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDHKIS 188
Query: 256 EKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQG 315
+PL LA A + LL+ ++
Sbjct: 189 HLGTPLYLACENQ--------------------QRA-------CVKKLLESGADVNQ--- 218
Query: 316 GEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFL 373
G+ + LH +E A +L+ DFGA + + G P+ S ++FL
Sbjct: 219 GKGQDSPLHAVVRTASEELACLLM-DFGADTQAKNAEGKRPVELVPPE--SPLAQLFL 273
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 151 bits (383), Expect = 2e-41
Identities = 55/317 (17%), Positives = 92/317 (29%), Gaps = 64/317 (20%)
Query: 317 EHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFG 376
E G TALH+A I+ + L+ + +N +T
Sbjct: 7 EDGDTALHLAVIHQHEPFLDFLL-----------GFSAGHEYLDLQNDLGQT-------- 47
Query: 377 ESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACS 436
LH A G+ VE +GA + + T +HLAC
Sbjct: 48 --------------------ALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACR 87
Query: 437 QGALDIVRLM------FNLQPSEKLVCL--NSTDAQKMTPLHCAAMF-DRCDVVQYLIDE 487
A ++ S+ + + T P + + D
Sbjct: 88 VRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDW 147
Query: 488 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNI-LHLLVLNGGGHI 546
L + + +PL +A + V L A++ + LHL V
Sbjct: 148 RLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQ---- 203
Query: 547 KEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIIN 606
A V E L+ GA + +PL A + L + G+
Sbjct: 204 ---AASVL-----ELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRA--HGA-PEP 252
Query: 607 ESDGEGLTPLHIASKEG 623
E G+ L+P + +
Sbjct: 253 EDGGDKLSPCSSSGSDS 269
Score = 149 bits (379), Expect = 5e-41
Identities = 60/382 (15%), Positives = 100/382 (26%), Gaps = 105/382 (27%)
Query: 217 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVN 276
T LH A + + +L+ A LD +
Sbjct: 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQ-------------------- 41
Query: 277 TRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECAR 336
N+ Q LHLA L + + L +L G TALH+A CA
Sbjct: 42 ----NDLGQTALHLAAILGEASTVEKLYAAG--AGVLVAERGGHTALHLACRVRAHTCAC 95
Query: 337 ILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNL 396
+L+ S R S+ Y ++ + T
Sbjct: 96 VLL-QPRPSHPRDASDTYLTQS---QDCTPDTSHAPA----------------------- 128
Query: 397 PLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLV 456
+ + + ++
Sbjct: 129 -AVDSQPNPENEEEPRDEDWRLQL------------------------------------ 151
Query: 457 CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEK-RSPLLLAASRGGWKTVL 515
+ + TPLH A + ++V+ L D GADLN + R+PL LA +
Sbjct: 152 --EAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLE 209
Query: 516 TLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNS 575
L++ A+ + R L +L + +A L GA
Sbjct: 210 LLLKAGADPTARMYGGRTPLGSALLRP--NP-----ILA-----RLLRAHGAPEPEDGGD 257
Query: 576 NESPLHLAARYGRYNTVKKLLS 597
SP + + +
Sbjct: 258 KLSPCSSSGSDSDSDNRDEGDE 279
Score = 136 bits (346), Expect = 2e-36
Identities = 55/367 (14%), Positives = 84/367 (22%), Gaps = 110/367 (29%)
Query: 150 DAEGNLPLHSAVHGGDFKAVELCLKSGAK---ISTQQFDLSTPVHLACSQGALDIVRLMF 206
+G+ LH AV ++ L A + Q T +HLA G V
Sbjct: 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEK-- 63
Query: 207 NLQPSEKLVC----LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLL 262
L + + T LH A L+ +
Sbjct: 64 -------LYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQS 116
Query: 263 LAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTA 322
+ + + + ++ + + G T
Sbjct: 117 QDCTP-------------DTSHAPAAVDSQPNPENEEEPRDEDWR--LQLEAENYDGHTP 161
Query: 323 LHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCS 382
LH+A I+ E R+L A N T
Sbjct: 162 LHVAVIHKDAEMVRLLRD-----------------AGADLNKPEPT-------------- 190
Query: 383 REEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDI 442
G PLH AV +EL LK+GA
Sbjct: 191 ----------CGRTPLHLAVEAQAASVLELLLKAGADP---------------------- 218
Query: 443 VRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPL 502
+ TPL A + + + L GA +K SP
Sbjct: 219 ----------------TARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPC 262
Query: 503 LLAASRG 509
+ S
Sbjct: 263 SSSGSDS 269
Score = 125 bits (317), Expect = 2e-32
Identities = 54/260 (20%), Positives = 90/260 (34%), Gaps = 31/260 (11%)
Query: 20 SSGVNTRILN---NKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAI 76
L+ + Q LHLA L + + L +L G TALH+A
Sbjct: 30 GFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAG--AGVLVAERGGHTALHLACR 87
Query: 77 YDFDECARILVSEQPECDWIMVKDFGASLKRACS--NGYYPIH-DAAKNASSKTMEVFLQ 133
CA +L+ +P D + + C+ + P D+ N ++
Sbjct: 88 VRAHTCACVLLQPRPSHP-RDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDED 146
Query: 134 FGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDL-STPVHL 192
+ + + +G+ PLH AV D + V L +GA ++ + TP+HL
Sbjct: 147 WRLQLEAE--------NYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHL 198
Query: 193 ACSQGALDIVRLMFNLQPSEKLV----CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGA 248
A A ++ L L+ + TPL A + + + L GA
Sbjct: 199 AVEAQAASVLEL---------LLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249
Query: 249 DLNVLDKEKRSPLLLAASRG 268
+K SP + S
Sbjct: 250 PEPEDGGDKLSPCSSSGSDS 269
Score = 124 bits (315), Expect = 3e-32
Identities = 55/320 (17%), Positives = 92/320 (28%), Gaps = 54/320 (16%)
Query: 29 NNKKQAVLHLATELNKVPILLILLQYK-DMIDILQGGEHGRTALHIAAIYDFDECARILV 87
LHLA P L LL + + + G+TALH+AAI L
Sbjct: 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65
Query: 88 SEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMIS 147
+ GA + A G+ +H A + + V LQ S +
Sbjct: 66 AA------------GAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYL 113
Query: 148 LFDAEGNLP------LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDI 201
+ + + + ++ + +D TP+H+A ++
Sbjct: 114 TQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEM 173
Query: 202 VRLMFNLQPSEKLVCLNSTDAQK-MTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSP 260
VRL+ + LN + TPLH A V++ L+ GAD R+P
Sbjct: 174 VRLLR-----DAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTP 228
Query: 261 LLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGR 320
L A L L L + + G
Sbjct: 229 LGSAL--------------LRPNPILA-----RL--------LRAHG--APEPEDGGDKL 259
Query: 321 TALHIAAIYDFDECARILVK 340
+ + + +
Sbjct: 260 SPCSSSGSDSDSDNRDEGDE 279
Score = 124 bits (313), Expect = 7e-32
Identities = 52/283 (18%), Positives = 91/283 (32%), Gaps = 24/283 (8%)
Query: 111 NGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVE 170
+G +H A + ++ L F E + L + G LH A G+ VE
Sbjct: 8 DGDTALHLAVIHQHEPFLDFLLGFSAGH-----EYLDLQNDLGQTALHLAAILGEASTVE 62
Query: 171 LCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLM------FNLQPSEKLVCL--NSTDA 222
+GA + + T +HLAC A ++ S+ + + T
Sbjct: 63 KLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPD 122
Query: 223 QKMTPLHCAAMF-DRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKT------NGV 275
P + + D L + + +PL +A + G
Sbjct: 123 TSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGA 182
Query: 276 NTRILNNKK-QAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDEC 334
+ + LHLA E +L +LL+ D GRT L A +
Sbjct: 183 DLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG--ADPTARMYGGRTPLGSALLRPNPIL 240
Query: 335 ARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGE 377
AR+L GA + P + ++ S + ++ +
Sbjct: 241 ARLLR-AHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDEYDD 282
Score = 80.3 bits (199), Expect = 7e-17
Identities = 25/184 (13%), Positives = 43/184 (23%), Gaps = 58/184 (31%)
Query: 458 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGAD---LNVLDKEKRSPLLLAASRGGWKTV 514
T LH A + + +L+ A L++ + ++ L LAA G
Sbjct: 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILG----- 56
Query: 515 LTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNN 574
E L GA + +
Sbjct: 57 ---------------------EA--------------STV-----EKLYAAGAGVLVAER 76
Query: 575 SNESPLHLAARYGRYNTVKKLLSS----------ERGSFIINESDGEGLTPLHIASKEGF 624
+ LHLA R + LL + + + P + S+
Sbjct: 77 GGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNP 136
Query: 625 HYSV 628
Sbjct: 137 ENEE 140
Score = 53.3 bits (129), Expect = 8e-08
Identities = 21/108 (19%), Positives = 36/108 (33%), Gaps = 14/108 (12%)
Query: 29 NNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVS 88
+ LHLA E +L +LL+ D GRT L A + AR+L +
Sbjct: 189 PTCGRTPLHLAVEAQAASVLELLLKAG--ADPTARMYGGRTPLGSALLRPNPILARLLRA 246
Query: 89 EQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGE 136
GA + P + ++ S + ++ +
Sbjct: 247 H------------GAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDEYDD 282
Score = 36.0 bits (84), Expect = 0.029
Identities = 5/64 (7%), Positives = 15/64 (23%), Gaps = 2/64 (3%)
Query: 20 SSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDF 79
+G + + L A + +L + + G + +
Sbjct: 213 KAGADPTARMYGGRTPLGSALLRPNPILARLLRAHG--APEPEDGGDKLSPCSSSGSDSD 270
Query: 80 DECA 83
+
Sbjct: 271 SDNR 274
Score = 30.2 bits (69), Expect = 2.0
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 604 IINESDGEGLTPLHIASKEG 623
+ +G T LH+A
Sbjct: 1 VFGYVTEDGDTALHLAVIHQ 20
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 149 bits (379), Expect = 2e-41
Identities = 66/236 (27%), Positives = 101/236 (42%), Gaps = 29/236 (12%)
Query: 393 EGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPS 452
PLH+A G + +++GA I T D TP+ A L+ V+
Sbjct: 10 NKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKY------- 62
Query: 453 EKLV----CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGA-DLNVLDKEKRSPLLLAAS 507
L+ ++ DA+ T LH AA +VVQYL+ G D+N D +P++ A
Sbjct: 63 --LIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATE 120
Query: 508 RGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGA 567
V L+ ++I ++D LH +G + ++A E L+
Sbjct: 121 YKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSG--CV-----DIA-----EILLAAKC 168
Query: 568 CINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
++ N +SPLH+AAR RY+ V LS R S + + EG TPL AS
Sbjct: 169 DLHAVNIHGDSPLHIAARENRYDCVVLFLS--RDS-DVTLKNKEGETPLQCASLNS 221
Score = 142 bits (360), Expect = 1e-38
Identities = 54/288 (18%), Positives = 108/288 (37%), Gaps = 58/288 (20%)
Query: 310 IDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTM 369
++ ++ R+ LH AA + +LV+ A + S+
Sbjct: 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQ-----------------AGANIDTCSE-- 42
Query: 370 EVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLST 429
+ PL A +AV+ +K+GA + + + ST
Sbjct: 43 -----------------------DQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGST 79
Query: 430 PVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGA 489
+HLA +G ++V+ + S + +N D TP+ A + D+V+ L+ +G+
Sbjct: 80 CLHLAAKKGHYEVVQYLL----SNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGS 135
Query: 490 DLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEF 549
D+N+ D E+ L AA G L+ K ++ +I+ + LH+
Sbjct: 136 DINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAAREN--RY--- 190
Query: 550 AEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLS 597
+ ++ + + LKN E+PL A+ + + ++
Sbjct: 191 --DCV-----VLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSK 231
Score = 136 bits (346), Expect = 7e-37
Identities = 61/310 (19%), Positives = 109/310 (35%), Gaps = 83/310 (26%)
Query: 218 NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNT 277
K +PLH AA D+ L+ GA+++ +++R+PL+ AA
Sbjct: 5 KMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAE----------- 53
Query: 278 RILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARI 337
NN +AV + L++ + G T LH+AA E +
Sbjct: 54 ---NNHLEAV-----KY--------LIKAG--ALVDPKDAEGSTCLHLAAKKGHYEVVQY 95
Query: 338 LVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLP 397
L+ SNG ++ G P
Sbjct: 96 LL-----------SNGQMDVNCQDDG------------------------------GWTP 114
Query: 398 LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLV- 456
+ A V+L L G+ I+ + + + +H A G +DI + L+
Sbjct: 115 MIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEI---------LLA 165
Query: 457 ---CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKT 513
L++ + +PLH AA +R D V + +D+ + +KE +PL A+ +
Sbjct: 166 AKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWS 225
Query: 514 VLTLVRNKAN 523
L + + +
Sbjct: 226 ALQMSKALQD 235
Score = 122 bits (309), Expect = 7e-32
Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 16/166 (9%)
Query: 459 NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLV 518
K +PLH AA D+ L+ GA+++ +++R+PL+ AA + V L+
Sbjct: 5 KMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLI 64
Query: 519 RNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGAC-INLKNNSNE 577
+ A + KD LHL GH EV + L++ G +N +++
Sbjct: 65 KAGALVDPKDAEGSTCLHLAAKK--GHY-----EVV-----QYLLSNGQMDVNCQDDGGW 112
Query: 578 SPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
+P+ A Y + VK LLS +GS IN D E LH A+ G
Sbjct: 113 TPMIWATEYKHVDLVKLLLS--KGS-DINIRDNEENICLHWAAFSG 155
Score = 117 bits (297), Expect = 3e-30
Identities = 58/250 (23%), Positives = 102/250 (40%), Gaps = 34/250 (13%)
Query: 23 VNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDEC 82
+N ++ + K++ LH A E V I +L+Q +I E RT L AA + E
Sbjct: 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAG--ANIDTCSEDQRTPLMEAAENNHLEA 59
Query: 83 ARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSR 142
+ L+ GA + + G +H AAK + ++ L G+
Sbjct: 60 VKYLIKA------------GALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQM----- 102
Query: 143 EEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIV 202
++ D G P+ A V+L L G+ I+ + + + +H A G +DI
Sbjct: 103 --DVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIA 160
Query: 203 RLMFNLQPSEKLV----CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKR 258
+ L+ L++ + +PLH AA +R D V + +D+ + +KE
Sbjct: 161 EI---------LLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGE 211
Query: 259 SPLLLAASRG 268
+PL A+
Sbjct: 212 TPLQCASLNS 221
Score = 98.3 bits (246), Expect = 3e-23
Identities = 46/239 (19%), Positives = 84/239 (35%), Gaps = 38/239 (15%)
Query: 16 LIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAA 75
L+ +G N + ++ L A E N + + L++ + G T LH+AA
Sbjct: 30 LV--QAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAG--ALVDPKDAEGSTCLHLAA 85
Query: 76 IYDFDECARILVSEQPECDWIMVKDFGASLKRACSN-GYYPIHDAAKNASSKTMEVFLQF 134
E + L+S G + G+ P+ A + +++ L
Sbjct: 86 KKGHYEVVQYLLSN------------GQMDVNCQDDGGWTPMIWATEYKHVDLVKLLL-- 131
Query: 135 GESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLAC 194
S G I++ D E N+ LH A G E+ L + + +P+H+A
Sbjct: 132 --SKGSD----INIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAA 185
Query: 195 SQGALDIVRLMFNLQPSEKLVC----LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGAD 249
+ D V L + + + + TPL CA++ + + D
Sbjct: 186 RENRYDCVVL---------FLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235
Score = 57.8 bits (141), Expect = 2e-09
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 569 INLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
+++ + SPLH AA G + L+ G+ I+ + TPL A++
Sbjct: 4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQ--AGA-NIDTCSEDQRTPLMEAAENN 55
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 147 bits (373), Expect = 2e-40
Identities = 44/237 (18%), Positives = 84/237 (35%), Gaps = 29/237 (12%)
Query: 393 EGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPS 452
+ A G ++ +++G + + T +H A +D+V+
Sbjct: 8 YSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKY------- 60
Query: 453 EKLVC----LNSTDAQK-MTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAAS 507
+ ++ TPLH A +V L+ GAD +++D E S + LAA
Sbjct: 61 --YISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQ 118
Query: 508 RGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGA 567
G V L+ ++ + D N L H + L+
Sbjct: 119 FGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYR--THSVDPTRL---------LLTFNV 167
Query: 568 CINLKNNSN-ESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
+NL + + + LH A G + LL G+ ++ + +G + L +A +
Sbjct: 168 SVNLGDKYHKNTALHWAVLAGNTTVISLLLE--AGAN-VDAQNIKGESALDLAKQRK 221
Score = 137 bits (349), Expect = 3e-37
Identities = 62/290 (21%), Positives = 98/290 (33%), Gaps = 70/290 (24%)
Query: 317 EHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFG 376
++ + A Y E R LV+ K
Sbjct: 7 DYSTWDIVKATQYGIYERCRELVE-----------------AGYDVRQPDK--------- 40
Query: 377 ESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDL-STPVHLAC 435
E LH A V+ + GA + DL STP+H A
Sbjct: 41 ----------------ENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWAT 84
Query: 436 SQGALDIVRLMFNLQPSEKLVC----LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADL 491
QG L +V L+ + D + + +H AA F +V YLI +G D+
Sbjct: 85 RQGHLSMVVQ---------LMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV 135
Query: 492 NVLDKEKRSPLLLAASRGGWK-TVLTLVRNKANILLKD-INRRNILHLLVLNGGGHIKEF 549
+++D+ +PL+ AA R L+ ++ L D ++ LH VL G +
Sbjct: 136 DMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAG--NT--- 190
Query: 550 AEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSE 599
V L+ GA ++ +N ES L LA + + L +
Sbjct: 191 --TVI-----SLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEAR 233
Score = 130 bits (330), Expect = 1e-34
Identities = 52/318 (16%), Positives = 93/318 (29%), Gaps = 85/318 (26%)
Query: 217 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVN 276
+ D + A + + + L++ G D+ DKE + L AA
Sbjct: 2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINN-------- 53
Query: 277 TRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECAR 336
+ ++ + ++D GG+ T LH A
Sbjct: 54 ------------RID-------LVKYYISKGAIVDQ-LGGDLNSTPLHWATRQGHLSMVV 93
Query: 337 ILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNL 396
L+K + A + EG
Sbjct: 94 QLMK-----------------YGADPSLIDG-------------------------EGCS 111
Query: 397 PLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQG-ALDIVRLMFNLQPSEKL 455
+H A G V + G + + TP+ A + ++D RL L
Sbjct: 112 CIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRL---------L 162
Query: 456 VC----LNSTD-AQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGG 510
+ +N D K T LH A + V+ L++ GA+++ + + S L LA R
Sbjct: 163 LTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKN 222
Query: 511 WKTVLTLVRNKANILLKD 528
+ L + +
Sbjct: 223 VWMINHLQEARQAKGYDN 240
Score = 119 bits (300), Expect = 1e-30
Identities = 36/172 (20%), Positives = 65/172 (37%), Gaps = 16/172 (9%)
Query: 458 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTL 517
+ D + A + + + L++ G D+ DKE + L AA V
Sbjct: 2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYY 61
Query: 518 VRNKANILLKDINRRNI-LHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSN 576
+ A + + + LH GH+ + L+ GA +L +
Sbjct: 62 ISKGAIVDQLGGDLNSTPLHWATRQ--GHL-----SMV-----VQLMKYGADPSLIDGEG 109
Query: 577 ESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSV 628
S +HLAA++G + V L++ +G ++ D G+TPL A+
Sbjct: 110 CSCIHLAAQFGHTSIVAYLIA--KGQ-DVDMMDQNGMTPLMWAAYRTHSVDP 158
Score = 117 bits (297), Expect = 4e-30
Identities = 55/275 (20%), Positives = 98/275 (35%), Gaps = 50/275 (18%)
Query: 111 NGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVE 170
+ I A + + + G + D E LH A V+
Sbjct: 8 YSTWDIVKATQYGIYERCRELV----EAGYDVRQP----DKENVTLLHWAAINNRIDLVK 59
Query: 171 LCLKSGAKISTQQFDL-STPVHLACSQGALDIVRLMFNLQPSEKLVC----LNSTDAQKM 225
+ GA + DL STP+H A QG L +V L+ + D +
Sbjct: 60 YYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQ---------LMKYGADPSLIDGEGC 110
Query: 226 TPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQ 285
+ +H AA F +V YLI +G D++++D+ +PL+ AA R
Sbjct: 111 SCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRT----------------- 153
Query: 286 AVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGAS 345
+ V +LL + +++ H TALH A + +L+ + GA+
Sbjct: 154 ---------HSVDPTRLLLTFNVSVNL-GDKYHKNTALHWAVLAGNTTVISLLL-EAGAN 202
Query: 346 LKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIG 380
+ G + A + + + + ++ G
Sbjct: 203 VDAQNIKGESALDLAKQRKNVWMINHLQEARQAKG 237
Score = 114 bits (288), Expect = 5e-29
Identities = 49/253 (19%), Positives = 91/253 (35%), Gaps = 40/253 (15%)
Query: 23 VNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDEC 82
+ ++ + AT+ L++ D+ Q + T LH AAI + +
Sbjct: 2 MTHI--DDYSTWDIVKATQYGIYERCRELVEAG--YDVRQPDKENVTLLHWAAINNRIDL 57
Query: 83 ARILVSEQPECDWIMVKDFGASLKRACSN-GYYPIHDAAKNASSKTMEVFLQFGESIGCS 141
+ +S+ GA + + + P+H A + + +++G
Sbjct: 58 VKYYISK------------GAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLI 105
Query: 142 REEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQG-ALD 200
D EG +H A G V + G + + TP+ A + ++D
Sbjct: 106 --------DGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVD 157
Query: 201 IVRLMFNLQPSEKLVC----LNSTD-AQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDK 255
RL L+ +N D K T LH A + V+ L++ GA+++ +
Sbjct: 158 PTRL---------LLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNI 208
Query: 256 EKRSPLLLAASRG 268
+ S L LA R
Sbjct: 209 KGESALDLAKQRK 221
Score = 114 bits (287), Expect = 7e-29
Identities = 47/351 (13%), Positives = 96/351 (27%), Gaps = 127/351 (36%)
Query: 150 DAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQ 209
D + A G ++ +++G +
Sbjct: 6 DDYSTWDIVKATQYGIYERCRELVEAGYDV------------------------------ 35
Query: 210 PSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEK-RSPLLLAASRG 268
D + +T LH AA+ +R D+V+Y I +GA ++ L + +PL A +G
Sbjct: 36 --------RQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQG 87
Query: 269 GWKTNGVNTRILNNKKQAVLHLAT-ELNKVPILLILLQYKDMIDILQGGEHGRTALHIAA 327
HL+ L++Y D G + +H+AA
Sbjct: 88 --------------------HLSMVVQ--------LMKYG--ADPSLIDGEGCSCIHLAA 117
Query: 328 IYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMI 387
+ L+ + +
Sbjct: 118 QFGHTSIVAYLIA-----------------KGQDVDMMDQ-------------------- 140
Query: 388 SLFAAEGNLPLHSAVHGGDFK-AVELCLKSGAKISTQ-QFDLSTPVHLACSQGALDIVRL 445
G PL A + L L ++ ++ +T +H A G ++ L
Sbjct: 141 -----NGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISL 195
Query: 446 MFNLQPSEKLV----CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLN 492
L+ +++ + + + L A ++ +L +
Sbjct: 196 ---------LLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKG 237
Score = 42.4 bits (101), Expect = 2e-04
Identities = 20/125 (16%), Positives = 43/125 (34%), Gaps = 16/125 (12%)
Query: 16 LIPSSSGVNTRILNNKKQAVLHLATE-LNKVPILLILLQYKDMIDILQGGEHGRTALHIA 74
LI + G + +++ L A + V +LL + +++ H TALH A
Sbjct: 128 LI--AKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNL-GDKYHKNTALHWA 184
Query: 75 AIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQF 134
+ +L+ GA++ G + A + + + +
Sbjct: 185 VLAGNTTVISLLLEA------------GANVDAQNIKGESALDLAKQRKNVWMINHLQEA 232
Query: 135 GESIG 139
++ G
Sbjct: 233 RQAKG 237
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 144 bits (366), Expect = 8e-40
Identities = 36/235 (15%), Positives = 72/235 (30%), Gaps = 27/235 (11%)
Query: 394 GNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSE 453
G + + A++ + + + I T S+G ++
Sbjct: 12 GQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLI---------- 61
Query: 454 KLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKT 513
+ PLH AA ++ +D +N LDK + L A G
Sbjct: 62 PSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDI 121
Query: 514 VLTLVRNK-ANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLK 572
V L + ++ LH G + ++ + L+ GA +L+
Sbjct: 122 VEMLFTQPNIELNQQNKLGDTALHAAAWKG--YA-----DIV-----QLLLAKGARTDLR 169
Query: 573 NNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG-FHY 626
N + +A + +KK ++ + S+ E + E H+
Sbjct: 170 NIEKKLAFDMATNAACASLLKKKQGTDA---VRTLSNAEDYLDDEDSDLEHHHHH 221
Score = 124 bits (313), Expect = 1e-32
Identities = 39/229 (17%), Positives = 73/229 (31%), Gaps = 18/229 (7%)
Query: 317 EHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFG 376
+ G+ + A L + + + +
Sbjct: 10 KPGQVKVFRALYTFEPRTPDELYIE-EGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAE 68
Query: 377 ESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACS 436
++ + PLH A G+ + CL + ++ ST ++ AC
Sbjct: 69 QAE-------------SIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACH 115
Query: 437 QGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDK 496
G DIV ++F ++ + LN + T LH AA D+VQ L+ +GA ++ +
Sbjct: 116 GGHKDIVEMLF----TQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNI 171
Query: 497 EKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGH 545
EK+ +A + + A L + L H
Sbjct: 172 EKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHHHH 220
Score = 113 bits (286), Expect = 6e-29
Identities = 36/204 (17%), Positives = 66/204 (32%), Gaps = 29/204 (14%)
Query: 65 EHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNAS 124
+ G+ + A L E +
Sbjct: 10 KPGQVKVFRALYTFEPRTPDELYIE------------EGDIIYITDMSDTNWWKGTSKGR 57
Query: 125 SKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQF 184
+ + + + PLH A G+ + CL + ++
Sbjct: 58 TGLIPSNYVAEQ-------------AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDK 104
Query: 185 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 244
ST ++ AC G DIV ++F ++ + LN + T LH AA D+VQ L+
Sbjct: 105 AGSTALYWACHGGHKDIVEMLF----TQPNIELNQQNKLGDTALHAAAWKGYADIVQLLL 160
Query: 245 DEGADLNVLDKEKRSPLLLAASRG 268
+GA ++ + EK+ +A +
Sbjct: 161 AKGARTDLRNIEKKLAFDMATNAA 184
Score = 113 bits (284), Expect = 1e-28
Identities = 28/226 (12%), Positives = 56/226 (24%), Gaps = 11/226 (4%)
Query: 217 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWK-TNGV 275
+ A L E D+ + + S+G
Sbjct: 5 PPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSN 64
Query: 276 NTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECA 335
LH A + + L L + + + + G TAL+ A +
Sbjct: 65 YVAEQAESIDNPLHEAAKRGNLSWLRECLDNR--VGVNGLDKAGSTALYWACHGGHKDIV 122
Query: 336 RILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGN 395
+L L + G +H AA + +++ L G E
Sbjct: 123 EMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNI--------EKK 174
Query: 396 LPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALD 441
L A + ++ + A + + + +
Sbjct: 175 LAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHHHH 220
Score = 111 bits (279), Expect = 5e-28
Identities = 24/166 (14%), Positives = 51/166 (30%), Gaps = 19/166 (11%)
Query: 458 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTL 517
+ A L E D+ + + S+G T
Sbjct: 5 PPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKG-----RTG 59
Query: 518 VRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNE 577
+ + + + N LH G++ ++ +N + +
Sbjct: 60 LIPSNYVAEQAESIDNPLHEAAKR--GNL-----SWL-----RECLDNRVGVNGLDKAGS 107
Query: 578 SPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
+ L+ A G + V+ L ++ +N+ + G T LH A+ +G
Sbjct: 108 TALYWACHGGHKDIVEMLF-TQPNI-ELNQQNKLGDTALHAAAWKG 151
Score = 71.1 bits (175), Expect = 4e-14
Identities = 22/181 (12%), Positives = 48/181 (26%), Gaps = 21/181 (11%)
Query: 20 SSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDF 79
LH A + + L L + + + + G TAL+ A
Sbjct: 61 IPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNR--VGVNGLDKAGSTALYWACHGGH 118
Query: 80 DECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIG 139
+ +L ++ L + G +H AA + +++ L G
Sbjct: 119 KDIVEMLFTQP-----------NIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTD 167
Query: 140 CSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGAL 199
+ E L A + ++ + A + + + +
Sbjct: 168 LR--------NIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHHH 219
Query: 200 D 200
Sbjct: 220 H 220
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 144 bits (366), Expect = 1e-39
Identities = 59/282 (20%), Positives = 100/282 (35%), Gaps = 52/282 (18%)
Query: 317 EHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFG 376
E G T LHIA + LV + + +
Sbjct: 7 EDGDTPLHIAVVQGNLPAVHRLVN-------------LFQQGGRELDIYNN--------- 44
Query: 377 ESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACS 436
PLH AV V L + +GA T HLAC
Sbjct: 45 ----------------LRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACE 88
Query: 437 QGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLD- 495
+ +R + + + + L + + +T LH A + + VQ L++ GAD++ +D
Sbjct: 89 HRSPTCLRALLD-SAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDI 147
Query: 496 KEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAA 555
K RSPL+ A V L+++ AN+ + + + LH G + +
Sbjct: 148 KSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRG--LL-----PLV- 199
Query: 556 VFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLS 597
L+ GA +LKN N++PL +A + ++ +
Sbjct: 200 ----RTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKAT 237
Score = 140 bits (356), Expect = 3e-38
Identities = 59/244 (24%), Positives = 93/244 (38%), Gaps = 37/244 (15%)
Query: 393 EGNLPLHSAVHGGDFKAVEL----CLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFN 448
+G+ PLH AV G+ AV + G ++ TP+HLA +VRL
Sbjct: 8 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRL--- 64
Query: 449 LQPSEKLV----CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGA----DLNVLDKEKRS 500
LV + D T H A ++ L+D A DL + + +
Sbjct: 65 ------LVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLT 118
Query: 501 PLLLAASRGGWKTVLTLVRNKANILLKDIN-RRNILHLLVLNGGGHIKEFAEEVAAVFLG 559
L +A + +TV L+ A+I DI R+ L V N + +
Sbjct: 119 ALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENN--SL-----SMV----- 166
Query: 560 ENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIA 619
+ L+ GA +N + S S LH A+ G V+ L+ G+ + + TPL +A
Sbjct: 167 QLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVR--SGAD-SSLKNCHNDTPLMVA 223
Query: 620 SKEG 623
Sbjct: 224 RSRR 227
Score = 132 bits (336), Expect = 2e-35
Identities = 60/316 (18%), Positives = 104/316 (32%), Gaps = 85/316 (26%)
Query: 217 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDE----GADLNVLDKEKRSPLLLAASRGGWKT 272
D TPLH A + V L++ G +L++ + +++PL LA
Sbjct: 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVI------ 55
Query: 273 NGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFD 332
V L L+ + HG+TA H+A +
Sbjct: 56 --------TTLPSVV-----RL--------LVTAG--ASPMALDRHGQTAAHLACEHRSP 92
Query: 333 ECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAA 392
C R L+ + D A +
Sbjct: 93 TCLRALL-----------DSAAPGTLD--LEARNY------------------------- 114
Query: 393 EGNLPLHSAVHGGDFKAVELCLKSGAKISTQQF-DLSTPVHLACSQGALDIVRLMFNLQP 451
+G LH AV+ + V+L L+ GA I +P+ A +L +V+L
Sbjct: 115 DGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQL------ 168
Query: 452 SEKLV----CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAAS 507
L+ +N+ + LH A+ +V+ L+ GAD ++ + +PL++A S
Sbjct: 169 ---LLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARS 225
Query: 508 RGGWKTVLTLVRNKAN 523
R + A+
Sbjct: 226 RRVIDILRGKATRPAS 241
Score = 126 bits (320), Expect = 3e-33
Identities = 63/306 (20%), Positives = 101/306 (33%), Gaps = 80/306 (26%)
Query: 188 TPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEG 247
TP+H+A QG L V + NL L+ + + TPLH A + VV+ L+ G
Sbjct: 11 TPLHIAVVQGNLPAVHRLVNLFQQGG-RELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 69
Query: 248 ADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYK 307
A LD+ ++ LA + + L+
Sbjct: 70 ASPMALDRHGQTAAHLACE--------------HRSPTCL-----R------ALLDSAAP 104
Query: 308 DMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSK 367
+D+ G TALH+A + E ++L++ A +A
Sbjct: 105 GTLDLEARNYDGLTALHVAVNTECQETVQLLLE-----------------RGADIDAVDI 147
Query: 368 TMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDL 427
G PL AV V+L L+ GA ++ Q +
Sbjct: 148 K------------------------SGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSG 183
Query: 428 STPVHLACSQGALDIVRLMFNLQPSEKLVC----LNSTDAQKMTPLHCAAMFDRCDVVQY 483
S+ +H A +G L +VR LV + + TPL A D+++
Sbjct: 184 SSALHSASGRGLLPLVRT---------LVRSGADSSLKNCHNDTPLMVARSRRVIDILRG 234
Query: 484 LIDEGA 489
A
Sbjct: 235 KATRPA 240
Score = 122 bits (308), Expect = 1e-31
Identities = 57/288 (19%), Positives = 91/288 (31%), Gaps = 60/288 (20%)
Query: 65 EHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNAS 124
E G T LHIA + LV+ + +
Sbjct: 7 EDGDTPLHIAVVQGNLPAVHRLVN------------------------LFQQGGRELDIY 42
Query: 125 SKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQF 184
+ PLH AV V L + +GA
Sbjct: 43 -------------------------NNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDR 77
Query: 185 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 244
T HLAC + +R + + + + L + + +T LH A + + VQ L+
Sbjct: 78 HGQTAAHLACEHRSPTCLRALLD-SAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLL 136
Query: 245 DEGADLNVLD-KEKRSPLLLAASRGGWKT------NGVNTRILNNKKQAVLHLATELNKV 297
+ GAD++ +D K RSPL+ A +G N + LH A+ +
Sbjct: 137 ERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLL 196
Query: 298 PILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGAS 345
P++ L++ D H T L +A + R AS
Sbjct: 197 PLVRTLVRSG--ADSSLKNCHNDTPLMVARSRRVIDILRGKA-TRPAS 241
Score = 121 bits (307), Expect = 2e-31
Identities = 52/247 (21%), Positives = 93/247 (37%), Gaps = 32/247 (12%)
Query: 29 NNKKQAVLHLATELNKVPILLILLQYKDM--IDILQGGEHGRTALHIAAIYDFDECARIL 86
+ LH+A +P + L+ ++ +T LH+A I R+L
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65
Query: 87 VSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMI 146
V+ GAS +G H A ++ S + L +
Sbjct: 66 VTA------------GASPMALDRHGQTAAHLACEHRSPTCLRALL----DSAAPGTLDL 109
Query: 147 SLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQF-DLSTPVHLACSQGALDIVRLM 205
+ +G LH AV+ + V+L L+ GA I +P+ A +L +V+L
Sbjct: 110 EARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQL- 168
Query: 206 FNLQPSEKLV----CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPL 261
L+ +N+ + LH A+ +V+ L+ GAD ++ + +PL
Sbjct: 169 --------LLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPL 220
Query: 262 LLAASRG 268
++A SR
Sbjct: 221 MVARSRR 227
Score = 113 bits (285), Expect = 1e-28
Identities = 39/175 (22%), Positives = 66/175 (37%), Gaps = 24/175 (13%)
Query: 458 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDE----GADLNVLDKEKRSPLLLAASRGGWKT 513
D TPLH A + V L++ G +L++ + +++PL LA
Sbjct: 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 61
Query: 514 VLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGAC----I 569
V LV A+ + D + + HL + L++ A +
Sbjct: 62 VRLLVTAGASPMALDRHGQTAAHLACEH--RSP-----TCL-----RALLDSAAPGTLDL 109
Query: 570 NLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGE-GLTPLHIASKEG 623
+N + LH+A TV+ LL RG+ I+ D + G +PL A +
Sbjct: 110 EARNYDGLTALHVAVNTECQETVQLLLE--RGA-DIDAVDIKSGRSPLIHAVENN 161
Score = 84.4 bits (210), Expect = 2e-18
Identities = 48/192 (25%), Positives = 78/192 (40%), Gaps = 25/192 (13%)
Query: 16 LIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQY--KDMIDILQGGEHGRTALHI 73
L+ ++G + L+ Q HLA E L LL +D+ G TALH+
Sbjct: 65 LV--TAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHV 122
Query: 74 AAIYDFDECARILVSEQPECDWIMVKDFGASL-KRACSNGYYPIHDAAKNASSKTMEVFL 132
A + E ++L+ GA + +G P+ A +N S +++ L
Sbjct: 123 AVNTECQETVQLLLER------------GADIDAVDIKSGRSPLIHAVENNSLSMVQLLL 170
Query: 133 QFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHL 192
Q G ++ G+ LHSA G V ++SGA S + TP+ +
Sbjct: 171 QHGANVNAQ--------MYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMV 222
Query: 193 ACSQGALDIVRL 204
A S+ +DI+R
Sbjct: 223 ARSRRVIDILRG 234
Score = 47.4 bits (114), Expect = 4e-06
Identities = 19/113 (16%), Positives = 36/113 (31%), Gaps = 15/113 (13%)
Query: 23 VNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDEC 82
++ + + + L A E N + ++ +LLQ+ ++ G +ALH A+
Sbjct: 142 IDAVDIKSGRSP-LIHAVENNSLSMVQLLLQHG--ANVNAQMYSGSSALHSASGRGLLPL 198
Query: 83 ARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFG 135
R LV GA + P+ A +
Sbjct: 199 VRTLVRS------------GADSSLKNCHNDTPLMVARSRRVIDILRGKATRP 239
Score = 32.8 bits (76), Expect = 0.23
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 604 IINESDGEGLTPLHIASKEG 623
+ +D +G TPLHIA +G
Sbjct: 1 MATRADEDGDTPLHIAVVQG 20
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 144 bits (366), Expect = 2e-39
Identities = 56/289 (19%), Positives = 104/289 (35%), Gaps = 44/289 (15%)
Query: 310 IDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTM 369
+D+ G G T L IA+ G + + + +
Sbjct: 1 MDVNVRGPDGFTPLMIASCSG---------------------GGLETGNSEEEEDAPAVI 39
Query: 370 EVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLST 429
F+ G S+ + G LH A A + L++ A + Q T
Sbjct: 40 SDFIYQGASLHNQTDR-------TGETALHLAARYSRSDAAKRLLEASADANIQDNMGRT 92
Query: 430 PVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGA 489
P+H A S A + +++ + L++ TPL AA +++ LI+ A
Sbjct: 93 PLHAAVSADAQGVFQILI----RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA 148
Query: 490 DLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEF 549
D+N +D +S L AA+ + L++N AN +++ L L G
Sbjct: 149 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAARE--GSY--- 203
Query: 550 AEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSS 598
E A + L++ A ++ ++ + P +A ++ V+ L
Sbjct: 204 --ETA-----KVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLE 245
Score = 128 bits (325), Expect = 9e-34
Identities = 50/205 (24%), Positives = 82/205 (40%), Gaps = 25/205 (12%)
Query: 429 TPVHLACSQGALDIVRLMFNLQPSEKLVCL---------NSTDAQKMTPLHCAAMFDRCD 479
TP+ +A G + + ++ N TD T LH AA + R D
Sbjct: 12 TPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSD 71
Query: 480 VVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKA-NILLKDINRRNILHLL 538
+ L++ AD N+ D R+PL A S L+RN+A ++ + + L L
Sbjct: 72 AAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILA 131
Query: 539 VLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSS 598
++ E+ LIN A +N ++ +S LH AA + LL
Sbjct: 132 ARLA---VEGMLED---------LINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK- 178
Query: 599 ERGSFIINESDGEGLTPLHIASKEG 623
G+ + + TPL +A++EG
Sbjct: 179 -NGANK-DMQNNREETPLFLAAREG 201
Score = 123 bits (312), Expect = 5e-32
Identities = 58/325 (17%), Positives = 93/325 (28%), Gaps = 97/325 (29%)
Query: 218 NSTDAQKMTPLHCAAMF-------------DRCDVVQYLIDEGADL-NVLDKEKRSPLLL 263
N TPL A+ D V+ I +GA L N D+ + L L
Sbjct: 4 NVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHL 63
Query: 264 AASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTAL 323
AA ++ A + LL+ D GRT L
Sbjct: 64 AA--------------RYSRSDAA-----KR--------LLEAS--ADANIQDNMGRTPL 94
Query: 324 HIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSR 383
H A D +IL+ N + A+ T
Sbjct: 95 HAAVSADAQGVFQILI-----------RNRATDLD--ARMHDGTT--------------- 126
Query: 384 EEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIV 443
PL A +E + S A ++ + +H A + +D
Sbjct: 127 -------------PLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAA 173
Query: 444 RLMFNLQPSEKLVC----LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKR 499
+ L+ + + ++ TPL AA + + L+D A+ ++ D R
Sbjct: 174 VV---------LLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDR 224
Query: 500 SPLLLAASRGGWKTVLTLVRNKANI 524
P +A R V L +
Sbjct: 225 LPRDIAQERMHHDIVRLLDLEHHHH 249
Score = 122 bits (310), Expect = 9e-32
Identities = 57/288 (19%), Positives = 95/288 (32%), Gaps = 51/288 (17%)
Query: 58 IDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIH 117
+D+ G G T L IA+ G +
Sbjct: 1 MDVNVRGPDGFTPLMIASCS--------------------------------GGGLETGN 28
Query: 118 DAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGA 177
+ + + F+ G S+ D G LH A A + L++ A
Sbjct: 29 SEEEEDAPAVISDFIYQGASLHNQT-------DRTGETALHLAARYSRSDAAKRLLEASA 81
Query: 178 KISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRC 237
+ Q TP+H A S A + +++ + L++ TPL AA
Sbjct: 82 DANIQDNMGRTPLHAAVSADAQGVFQILI----RNRATDLDARMHDGTTPLILAARLAVE 137
Query: 238 DVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKT------NGVNTRILNNKKQAVLHLA 291
+++ LI+ AD+N +D +S L AA+ NG N + NN+++ L LA
Sbjct: 138 GMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLA 197
Query: 292 TELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILV 339
+LL + + R IA + R+L
Sbjct: 198 AREGSYETAKVLLDHF--ANRDITDHMDRLPRDIAQERMHHDIVRLLD 243
Score = 117 bits (295), Expect = 8e-30
Identities = 60/322 (18%), Positives = 95/322 (29%), Gaps = 100/322 (31%)
Query: 188 TPVHLACSQGALDIVRLMFNLQPSEKLVCL---------NSTDAQKMTPLHCAAMFDRCD 238
TP+ +A G + + ++ N TD T LH AA + R D
Sbjct: 12 TPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSD 71
Query: 239 VVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAV----LHLATEL 294
+ L++ AD N+ D R+PL A S + + + AT+L
Sbjct: 72 AAKRLLEASADANIQDNMGRTPLHAAVS--------------ADAQGVFQILIRNRATDL 117
Query: 295 NKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGY 354
+ + G T L +AA + L+
Sbjct: 118 DA----------RM--------HDGTTPLILAARLAVEGMLEDLIN-------------- 145
Query: 355 YPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCL 414
A NA G LH A + A + L
Sbjct: 146 ---SHADVNAVDD-------------------------LGKSALHWAAAVNNVDAAVVLL 177
Query: 415 KSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC----LNSTDAQKMTPLH 470
K+GA Q TP+ LA +G+ + ++ L+ + TD P
Sbjct: 178 KNGANKDMQNNREETPLFLAAREGSYETAKV---------LLDHFANRDITDHMDRLPRD 228
Query: 471 CAAMFDRCDVVQYLIDEGADLN 492
A D+V+ L E +
Sbjct: 229 IAQERMHHDIVRLLDLEHHHHH 250
Score = 96.8 bits (242), Expect = 1e-22
Identities = 49/228 (21%), Positives = 77/228 (33%), Gaps = 36/228 (15%)
Query: 29 NNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVS 88
+ + LHLA ++ LL+ D GRT LH A D +IL+
Sbjct: 54 DRTGETALHLAARYSRSDAAKRLLEAS--ADANIQDNMGRTPLHAAVSADAQGVFQILIR 111
Query: 89 EQPECDWIMVKDFGASLKRACSN-GYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMIS 147
A+ A + G P+ AA+ A +E + +
Sbjct: 112 N------------RATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAV------ 153
Query: 148 LFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFN 207
D G LH A + A + LK+GA Q TP+ LA +G+ + ++
Sbjct: 154 --DDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKV--- 208
Query: 208 LQPSEKLVC----LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLN 251
L+ + TD P A D+V+ L E +
Sbjct: 209 ------LLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHH 250
Score = 61.3 bits (150), Expect = 1e-10
Identities = 32/161 (19%), Positives = 53/161 (32%), Gaps = 24/161 (14%)
Query: 23 VNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDEC 82
++ R + L LA L +L L+ D+ + G++ALH AA + +
Sbjct: 117 LDAR--MHDGTTPLILAARLAVEGMLEDLINSH--ADVNAVDDLGKSALHWAAAVNNVDA 172
Query: 83 ARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSR 142
A +L+ GA+ + P+ AA+ S +T +V L +R
Sbjct: 173 AVVLLKN------------GANKDMQNNREETPLFLAAREGSYETAKVLL----DHFANR 216
Query: 143 EEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQ 183
+ D LP A V L
Sbjct: 217 DIT----DHMDRLPRDIAQERMHHDIVRLLDLEHHHHHHHH 253
Score = 50.9 bits (123), Expect = 4e-07
Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 15/68 (22%)
Query: 569 INLKNNSNESPLHLAARYGRYNT-------------VKKLLSSERGSFIINESDGEGLTP 615
+N++ +PL +A+ G + + +G+ + N++D G T
Sbjct: 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIY--QGASLHNQTDRTGETA 60
Query: 616 LHIASKEG 623
LH+A++
Sbjct: 61 LHLAARYS 68
Score = 46.7 bits (112), Expect = 7e-06
Identities = 20/114 (17%), Positives = 39/114 (34%), Gaps = 16/114 (14%)
Query: 16 LIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAA 75
LI +S + +++ ++ LH A +N V ++LL+ + T L +AA
Sbjct: 143 LI--NSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG--ANKDMQNNREETPLFLAA 198
Query: 76 IYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTME 129
E A++L+ A+ P A + +
Sbjct: 199 REGSYETAKVLLDH------------FANRDITDHMDRLPRDIAQERMHHDIVR 240
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 136 bits (344), Expect = 1e-36
Identities = 53/240 (22%), Positives = 89/240 (37%), Gaps = 34/240 (14%)
Query: 394 GNLPLHSAVHGGDFKAVELCLKS-GAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPS 452
N PLH A +F V+ L S + + + D P+H + S A +I
Sbjct: 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSF------- 54
Query: 453 EKLV-------CLNSTDAQKMTPLHCAAMFDRCDVVQYLID--EGADLNVLDKEKRSPLL 503
L+ + D TP H A +VV+ L D DLN + + + L
Sbjct: 55 --LLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLH 112
Query: 504 LAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLI 563
LA + ++ L+ N A++ +KD + LH G + ++ E L
Sbjct: 113 LAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVG--SL-----KLI-----ELLC 160
Query: 564 NLG-ACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKE 622
LG + +N ++ +PL A G + L+ + D +G +A E
Sbjct: 161 GLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE--YDLVDNKGAKAEDVALNE 218
Score = 129 bits (327), Expect = 2e-34
Identities = 51/201 (25%), Positives = 83/201 (41%), Gaps = 23/201 (11%)
Query: 428 STPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDE 487
+ P+H AC + V+ + + +PS D PLH + F ++ +L+ +
Sbjct: 3 NYPLHQACMENEFFKVQELLHSKPSLL----LQKDQDGRIPLHWSVSFQAHEITSFLLSK 58
Query: 488 GADLNV---LDKEKRSPLLLAASRGGWKTVLTLVRN--KANILLKDINRRNILHLLVLNG 542
++N+ D +P +A S G + V +L K ++ LHL V
Sbjct: 59 MENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKK 118
Query: 543 GGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGS 602
EV+ + LI GA + +K+ N+ PLH AA G ++ L G
Sbjct: 119 --WF-----EVS-----QFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG--LGK 164
Query: 603 FIINESDGEGLTPLHIASKEG 623
+N D +G TPL A EG
Sbjct: 165 SAVNWQDKQGWTPLFHALAEG 185
Score = 117 bits (295), Expect = 6e-30
Identities = 51/286 (17%), Positives = 90/286 (31%), Gaps = 74/286 (25%)
Query: 225 MTPLHCAAMFDRCD-VVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNK 283
PLH A M + V + L + + L D++ R PL + S
Sbjct: 3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVS--------------FQA 48
Query: 284 KQAVLHLATELNKVPILLILLQYKDMIDIL-QGGEHGRTALHIAAIYDFDECARILVKDF 342
+ LL + +++ + G T HIA E + L
Sbjct: 49 HEIT-----SF--------LLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLY--- 92
Query: 343 GASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAV 402
N + +G LH AV
Sbjct: 93 --------DRPL----KPDLNKITN-------------------------QGVTCLHLAV 115
Query: 403 HGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTD 462
F+ + +++GA + + P+H A S G+L ++ L+ +N D
Sbjct: 116 GKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLC----GLGKSAVNWQD 171
Query: 463 AQKMTPLHCAAMFDRCDVVQYLIDE-GADLNVLDKEKRSPLLLAAS 507
Q TPL A D L+++ GA+ +++D + +A +
Sbjct: 172 KQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN 217
Score = 115 bits (290), Expect = 2e-29
Identities = 52/231 (22%), Positives = 84/231 (36%), Gaps = 26/231 (11%)
Query: 153 GNLPLHSAVHGGDFKAVELCLKS-GAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPS 211
N PLH A +F V+ L S + + + D P+H + S A +I
Sbjct: 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSF------- 54
Query: 212 EKLV-------CLNSTDAQKMTPLHCAAMFDRCDVVQYLID--EGADLNVLDKEKRSPLL 262
L+ + D TP H A +VV+ L D DLN + + + L
Sbjct: 55 --LLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLH 112
Query: 263 LAASRGGWKT------NGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGG 316
LA + ++ NG + RI + Q LH A + + ++ +L +
Sbjct: 113 LAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG-LGKSAVNWQD 171
Query: 317 EHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSK 367
+ G T L A + A +LV+ +GA + G A K
Sbjct: 172 KQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKK 222
Score = 106 bits (268), Expect = 2e-26
Identities = 49/232 (21%), Positives = 90/232 (38%), Gaps = 21/232 (9%)
Query: 36 LHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDW 95
LH A N+ + LL K +LQ + GR LH + + E L+S+ +
Sbjct: 6 LHQACMENEFFKVQELLHSKP-SLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 96 IMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNL 155
D +G+ P H A + + ++ ++ +G
Sbjct: 65 DDYPD---------DSGWTPFHIACSVGNLEVVKSLYDRPLKPD------LNKITNQGVT 109
Query: 156 PLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLV 215
LH AV F+ + +++GA + + P+H A S G+L ++ L+
Sbjct: 110 CLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLC----GLGKS 165
Query: 216 CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDE-GADLNVLDKEKRSPLLLAAS 266
+N D Q TPL A D L+++ GA+ +++D + +A +
Sbjct: 166 AVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN 217
Score = 70.2 bits (173), Expect = 8e-14
Identities = 32/218 (14%), Positives = 64/218 (29%), Gaps = 61/218 (27%)
Query: 29 NNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVS 88
++ H+A + + ++ L D+ + G T LH+A + E ++ L+
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 128
Query: 89 EQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISL 148
+ A+
Sbjct: 129 ----------------------------NGASVRIK------------------------ 136
Query: 149 FDAEGNLPLHSAVHGGDFKAVELCLKSG-AKISTQQFDLSTPVHLACSQGALDIVRLMFN 207
D +PLH A G K +EL G + ++ Q TP+ A ++G D L+
Sbjct: 137 -DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLV- 194
Query: 208 LQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLID 245
+ + D + A V ++ ++
Sbjct: 195 ---EKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLN 226
Score = 50.9 bits (123), Expect = 3e-07
Identities = 21/147 (14%), Positives = 44/147 (29%), Gaps = 20/147 (13%)
Query: 16 LIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAA 75
L + + N+ LHLA + L++ + + + LH AA
Sbjct: 91 LYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENG--ASVRIKDKFNQIPLHRAA 148
Query: 76 IYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFG 135
+ +L + + +D G+ P+ A + +
Sbjct: 149 SVGSLKLIELLCG-LGKSA-VNWQD---------KQGWTPLFHALAEGHGDAAVLLV--- 194
Query: 136 ESIGCSREEMISLFDAEGNLPLHSAVH 162
E G + + D +G A++
Sbjct: 195 EKYGAEYDLV----DNKGAKAEDVALN 217
Score = 47.1 bits (113), Expect = 6e-06
Identities = 22/111 (19%), Positives = 36/111 (32%), Gaps = 14/111 (12%)
Query: 16 LIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAA 75
LI +G + RI + Q LH A + + ++ +L + + G T L A
Sbjct: 126 LI--ENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG-LGKSAVNWQDKQGWTPLFHAL 182
Query: 76 IYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSK 126
+ A +LV + GA + G A K
Sbjct: 183 AEGHGDAAVLLVEKY-----------GAEYDLVDNKGAKAEDVALNEQVKK 222
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 132 bits (334), Expect = 2e-35
Identities = 51/269 (18%), Positives = 98/269 (36%), Gaps = 45/269 (16%)
Query: 225 MTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKK 284
+ + A ++ + ++ + + D++ R+ L A S
Sbjct: 8 IMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACS--------------AGHT 53
Query: 285 QAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGA 344
+ V E LLQ + + + G + LHIAA DE + L+ GA
Sbjct: 54 EIV-----EF--------LLQLG--VPVNDKDDAGWSPLHIAASAGXDEIVKALLVK-GA 97
Query: 345 SLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHG 404
+ NG P+H AA + + L+ G + +H A
Sbjct: 98 HVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH--------YDATAMHRAAAK 149
Query: 405 GDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQ 464
G+ K V + L A + Q + +TP+HLAC + ++ + + S + + +
Sbjct: 150 GNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGAS-----IYIENKE 204
Query: 465 KMTPLHCAAMFDRCDVVQYLIDEGADLNV 493
+ TPL A ++ + EG + ++
Sbjct: 205 EKTPLQVAK--GGLGLILKRLAEGEEASM 231
Score = 115 bits (289), Expect = 2e-29
Identities = 55/285 (19%), Positives = 103/285 (36%), Gaps = 61/285 (21%)
Query: 313 LQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVF 372
++G ++A DE ++ + + +
Sbjct: 1 MEGCVSNIMICNLAYSGKLDELKERILA-----------------DKSLATRTDQ----- 38
Query: 373 LQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVH 432
+ LH A G + VE L+ G ++ + +P+H
Sbjct: 39 --------------------DSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLH 78
Query: 433 LACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLN 492
+A S G +IV+ + +N+ + TPLH AA +R ++ L++ GA+ +
Sbjct: 79 IAASAGXDEIVKALLVKGAH-----VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133
Query: 493 VLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEE 552
D + + AA++G K V L+ KA+ ++D LHL +F
Sbjct: 134 AKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKF--- 190
Query: 553 VAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLS 597
L+ GA I ++N ++PL +A G + K L+
Sbjct: 191 ---------LVTQGASIYIENKEEKTPLQVAK--GGLGLILKRLA 224
Score = 114 bits (286), Expect = 6e-29
Identities = 55/228 (24%), Positives = 89/228 (39%), Gaps = 28/228 (12%)
Query: 397 PLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLV 456
+ A G + E L + + D T +H ACS G +IV L+
Sbjct: 10 ICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEF---------LL 60
Query: 457 C----LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWK 512
+N D +PLH AA ++V+ L+ +GA +N +++ +PL AAS+ +
Sbjct: 61 QLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHE 120
Query: 513 TVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLK 572
+ L+ AN KD +H G + L+ A N++
Sbjct: 121 IAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHI------------LLFYKASTNIQ 168
Query: 573 NNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIAS 620
+ +PLHLA R K L++ I + E TPL +A
Sbjct: 169 DTEGNTPLHLACDEERVEEAKFLVTQGAS---IYIENKEEKTPLQVAK 213
Score = 110 bits (277), Expect = 1e-27
Identities = 48/248 (19%), Positives = 90/248 (36%), Gaps = 31/248 (12%)
Query: 61 LQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAA 120
++G ++A DE ++++ + R + +H A
Sbjct: 1 MEGCVSNIMICNLAYSGKLDELKERILAD------------KSLATRTDQDSRTALHWAC 48
Query: 121 KNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKIS 180
++ +E LQ G + D G PLH A G + V+ L GA ++
Sbjct: 49 SAGHTEIVEFLLQLGVPVNDK--------DDAGWSPLHIAASAGXDEIVKALLVKGAHVN 100
Query: 181 TQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVV 240
+ TP+H A S+ +I ++ + ++ D T +H AA +V
Sbjct: 101 AVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-----PDAKDHYDATAMHRAAAKGNLKMV 155
Query: 241 QYLIDEGADLNVLDKEKRSPLLLAASRGGWKT------NGVNTRILNNKKQAVLHLATEL 294
L+ A N+ D E +PL LA + G + I N +++ L +A
Sbjct: 156 HILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGG 215
Query: 295 NKVPILLI 302
+ + +
Sbjct: 216 LGLILKRL 223
Score = 108 bits (270), Expect = 1e-26
Identities = 48/233 (20%), Positives = 87/233 (37%), Gaps = 29/233 (12%)
Query: 20 SSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDF 79
+ + + LH A I+ LLQ + + + G + LHIAA
Sbjct: 28 ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG--VPVNDKDDAGWSPLHIAASAGX 85
Query: 80 DECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIG 139
DE + L+ + GA + NG P+H AA + + L+ G +
Sbjct: 86 DEIVKALLVK------------GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133
Query: 140 CSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGAL 199
D +H A G+ K V + L A + Q + +TP+HLAC + +
Sbjct: 134 AK--------DHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERV 185
Query: 200 DIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNV 252
+ + + S + + ++ TPL A ++ + EG + ++
Sbjct: 186 EEAKFLVTQGAS-----IYIENKEEKTPLQVAK--GGLGLILKRLAEGEEASM 231
Score = 107 bits (269), Expect = 1e-26
Identities = 51/239 (21%), Positives = 92/239 (38%), Gaps = 27/239 (11%)
Query: 29 NNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVS 88
+ +LA + +L K + + RTALH A E L+
Sbjct: 4 CVSNIMICNLAYSGKLDELKERILADK--SLATRTDQDSRTALHWACSAGHTEIVEFLLQ 61
Query: 89 EQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISL 148
G + G+ P+H AA + ++ L G +
Sbjct: 62 L------------GVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAV------- 102
Query: 149 FDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNL 208
+ G PLH A + + L+ GA + +T +H A ++G L +V ++
Sbjct: 103 -NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFY 161
Query: 209 QPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASR 267
+ S N D + TPLH A +R + ++L+ +GA + + +KE+++PL +A
Sbjct: 162 KAS-----TNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGG 215
Score = 107 bits (268), Expect = 2e-26
Identities = 49/207 (23%), Positives = 75/207 (36%), Gaps = 28/207 (13%)
Query: 429 TPVHLACSQGALDIVRLMFNLQPSEKLVC----LNSTDAQKMTPLHCAAMFDRCDVVQYL 484
+LA S ++ ++ TD T LH A ++V++L
Sbjct: 9 MICNLAYSGKLDELKER---------ILADKSLATRTDQDSRTALHWACSAGHTEIVEFL 59
Query: 485 IDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGG 544
+ G +N D SPL +AAS G + V L+ A++ + N LH
Sbjct: 60 LQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRH 119
Query: 545 HIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFI 604
I L+ GA + K++ + + +H AA G V LL +
Sbjct: 120 EIAVM------------LLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAS--- 164
Query: 605 INESDGEGLTPLHIASKEGFHYSVSIF 631
N D EG TPLH+A E
Sbjct: 165 TNIQDTEGNTPLHLACDEERVEEAKFL 191
Score = 96.9 bits (241), Expect = 7e-23
Identities = 35/166 (21%), Positives = 63/166 (37%), Gaps = 15/166 (9%)
Query: 466 MTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANIL 525
+ + A ++ + ++ + + D++ R+ L A S G + V L++ +
Sbjct: 8 IMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN 67
Query: 526 LKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAAR 585
KD + LH+ G I + L+ GA +N N + +PLH AA
Sbjct: 68 DKDDAGWSPLHIAASAGXDEIVKA------------LLVKGAHVNAVNQNGCTPLHYAAS 115
Query: 586 YGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIF 631
R+ LL + D T +H A+ +G V I
Sbjct: 116 KNRHEIAVMLLEGGAN---PDAKDHYDATAMHRAAAKGNLKMVHIL 158
Score = 51.4 bits (123), Expect = 2e-07
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Query: 572 KNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
SN +LA +++L+ S + +D + T LH A G
Sbjct: 3 GCVSNIMICNLAYSGKLDELKERILA--DKS-LATRTDQDSRTALHWACSAG 51
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 132 bits (334), Expect = 1e-34
Identities = 46/338 (13%), Positives = 91/338 (26%), Gaps = 77/338 (22%)
Query: 285 QAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGA 344
+ + T +K + D + HG +A + A + L+ + GA
Sbjct: 2 MDLSRINTWKSKQLKSFLSS-----KDTFKADVHGHSASYYAIADNNVRLVCTLL-NAGA 55
Query: 345 SLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHG 404
+P+H AA +K +++ L G ++ GN L+ AV
Sbjct: 56 LKNLL--ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDK--------GNTALYYAVDS 105
Query: 405 GDFKAVELCLKSGAKISTQ-QFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDA 463
G+ + V+L +K ++ + T + A + IV + PS A
Sbjct: 106 GNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS------TFDLA 159
Query: 464 QKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKAN 523
++ +H D++ L+D N + P + A
Sbjct: 160 ILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNK------------- 206
Query: 524 ILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLA 583
+ E+ + L I S
Sbjct: 207 ------------DI--------------EML-----QALFKYDINIY-------SANLEN 228
Query: 584 ARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASK 621
K ++ + + +K
Sbjct: 229 VLLDDAEIAKMIIE--KHV-EYKSDSYTKDLDIVKNNK 263
Score = 128 bits (325), Expect = 2e-33
Identities = 32/226 (14%), Positives = 71/226 (31%), Gaps = 26/226 (11%)
Query: 400 SAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLN 459
S ++ K ++ S + + A + + +V + N N
Sbjct: 5 SRINTWKSKQLKS-FLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLN-----AGALKN 58
Query: 460 STDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVR 519
+ PLH AA + +V+ L+ G D + D + + L A G +TV V+
Sbjct: 59 LLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVK 116
Query: 520 NKANILLKDIN-RRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNES 578
++ + + V+ + + ++ S
Sbjct: 117 KNWRLMFYGKTGWKTSFYHAVML--NDV-----SIV-----SYFLSEIP-STFDLAILLS 163
Query: 579 PLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTP-LHIASKEG 623
+H+ + G + + LL + N ++ P + +A
Sbjct: 164 CIHITIKNGHVDMMILLLD--YMTS-TNTNNSLLFIPDIKLAIDNK 206
Score = 127 bits (321), Expect = 6e-33
Identities = 54/353 (15%), Positives = 107/353 (30%), Gaps = 71/353 (20%)
Query: 33 QAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPE 92
+ + T +K + D + HG +A + A + L++
Sbjct: 2 MDLSRINTWKSKQLKSFLSS-----KDTFKADVHGHSASYYAIADNNVRLVCTLLNA--- 53
Query: 93 CDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAE 152
GA +P+H AA +K +++ L G D +
Sbjct: 54 ---------GALKNLL--ENEFPLHQAATLEDTKIVKILLFSGLDDSQF--------DDK 94
Query: 153 GNLPLHSAVHGGDFKAVELCLKSGAKISTQ-QFDLSTPVHLACSQGALDIVRLMFNLQPS 211
GN L+ AV G+ + V+L +K ++ + T + A + IV + PS
Sbjct: 95 GNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS 154
Query: 212 EKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWK 271
A ++ +H D++ L+D N + P +
Sbjct: 155 ------TFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDI--------- 199
Query: 272 TNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDF 331
LA + + +L L +Y + +A + D
Sbjct: 200 -----------------KLAIDNKDIEMLQALFKY---------DINIYSANLENVLLDD 233
Query: 332 DECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSRE 384
E A++++ + K I K + L+ + C ++
Sbjct: 234 AEIAKMII-EKHVEYKSDSYTKDLDIVKNNKLDEIISKNKELRLM-YVNCVKK 284
Score = 37.5 bits (88), Expect = 0.009
Identities = 14/115 (12%), Positives = 33/115 (28%), Gaps = 22/115 (19%)
Query: 29 NNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVS 88
+ + LA + + +L L +Y + +A + D E A++++
Sbjct: 192 SLLFIPDIKLAIDNKDIEMLQALFKY---------DINIYSANLENVLLDDAEIAKMIIE 242
Query: 89 EQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSRE 143
+ K I K + L+ + C ++
Sbjct: 243 K------------HVEYKSDSYTKDLDIVKNNKLDEIISKNKELRLM-YVNCVKK 284
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 129 bits (326), Expect = 2e-34
Identities = 45/205 (21%), Positives = 83/205 (40%), Gaps = 16/205 (7%)
Query: 393 EGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPS 452
G LH A A + L++ A + Q TP+H A S A + +++
Sbjct: 24 TGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI----R 79
Query: 453 EKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWK 512
+ L++ TPL AA +++ LI+ AD+N +D +S L AA+
Sbjct: 80 NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVD 139
Query: 513 TVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLK 572
+ L++N AN +++ L L G E A + L++ A ++
Sbjct: 140 AAVVLLKNGANKDMQNNREETPLFLAARE--GSY-----ETA-----KVLLDHFANRDIT 187
Query: 573 NNSNESPLHLAARYGRYNTVKKLLS 597
++ + P +A ++ V+ L
Sbjct: 188 DHMDRLPRDIAQERMHHDIVRLLDE 212
Score = 127 bits (323), Expect = 6e-34
Identities = 58/225 (25%), Positives = 86/225 (38%), Gaps = 36/225 (16%)
Query: 410 VELCLKSGAKISTQQ-FDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCL-------NST 461
+ + GA + Q T +HLA D + L N
Sbjct: 7 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKR------------LLEASADANIQ 54
Query: 462 DAQKMTPLHCAAMFDRCDVVQYLIDEGA-DLNVLDKEKRSPLLLAASRGGWKTVLTLVRN 520
D TPLH A D V Q LI A DL+ + +PL+LAA + L+ +
Sbjct: 55 DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS 114
Query: 521 KANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPL 580
A++ D ++ LH ++ + A L+ GA +++NN E+PL
Sbjct: 115 HADVNAVDDLGKSALHWAAAVN--NV-----DAA-----VVLLKNGANKDMQNNREETPL 162
Query: 581 HLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFH 625
LAAR G Y T K LL + + +D P IA + H
Sbjct: 163 FLAAREGSYETAKVLLD--HFANR-DITDHMDRLPRDIAQERMHH 204
Score = 112 bits (282), Expect = 3e-28
Identities = 55/279 (19%), Positives = 85/279 (30%), Gaps = 83/279 (29%)
Query: 218 NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNT 277
N TD T LH AA + R D + L++ AD N+ D R+PL
Sbjct: 19 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPL---------------- 62
Query: 278 RILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARI 337
H A + + IL++ + D+ G T L +AA +
Sbjct: 63 -----------HAAVSADAQGVFQILIRNRA-TDLDARMHDGTTPLILAARLAVEGMLED 110
Query: 338 LVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLP 397
L+ A NA G
Sbjct: 111 LIN-----------------SHADVNAVDD-------------------------LGKSA 128
Query: 398 LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLV- 456
LH A + A + LK+GA Q TP+ LA +G+ + ++ L+
Sbjct: 129 LHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKV---------LLD 179
Query: 457 ---CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLN 492
+ TD P A D+V+ L + +
Sbjct: 180 HFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS 218
Score = 111 bits (281), Expect = 4e-28
Identities = 46/196 (23%), Positives = 75/196 (38%), Gaps = 12/196 (6%)
Query: 150 DAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQ 209
D G LH A A + L++ A + Q TP+H A S A + +++
Sbjct: 22 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI--- 78
Query: 210 PSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGG 269
+ L++ TPL AA +++ LI+ AD+N +D +S L AA+
Sbjct: 79 -RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 137
Query: 270 WKT------NGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTAL 323
NG N + NN+++ L LA +LL + + R
Sbjct: 138 VDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHF--ANRDITDHMDRLPR 195
Query: 324 HIAAIYDFDECARILV 339
IA + R+L
Sbjct: 196 DIAQERMHHDIVRLLD 211
Score = 95.9 bits (240), Expect = 1e-22
Identities = 48/228 (21%), Positives = 77/228 (33%), Gaps = 36/228 (15%)
Query: 29 NNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVS 88
+ + LHLA ++ LL+ D GRT LH A D +IL+
Sbjct: 22 DRTGETALHLAARYSRSDAAKRLLEAS--ADANIQDNMGRTPLHAAVSADAQGVFQILIR 79
Query: 89 EQPECDWIMVKDFGASLKRACSN-GYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMIS 147
A+ A + G P+ AA+ A +E + +
Sbjct: 80 N------------RATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAV------ 121
Query: 148 LFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFN 207
D G LH A + A + LK+GA Q TP+ LA +G+ + ++
Sbjct: 122 --DDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKV--- 176
Query: 208 LQPSEKLV----CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLN 251
L+ + TD P A D+V+ L + +
Sbjct: 177 ------LLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS 218
Score = 62.8 bits (154), Expect = 3e-11
Identities = 33/154 (21%), Positives = 53/154 (34%), Gaps = 22/154 (14%)
Query: 29 NNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVS 88
+ L LA L +L L+ D+ + G++ALH AA + + A +L+
Sbjct: 89 MHDGTTPLILAARLAVEGMLEDLINSH--ADVNAVDDLGKSALHWAAAVNNVDAAVVLLK 146
Query: 89 EQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISL 148
GA+ + P+ AA+ S +T +V L +R+
Sbjct: 147 N------------GANKDMQNNREETPLFLAAREGSYETAKVLL----DHFANRDIT--- 187
Query: 149 FDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQ 182
D LP A V L + S Q
Sbjct: 188 -DHMDRLPRDIAQERMHHDIVRLLDEYNLVRSPQ 220
Score = 43.9 bits (105), Expect = 6e-05
Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 4/73 (5%)
Query: 16 LIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAA 75
L+ +G N + NN+++ L LA +LL + + R IA
Sbjct: 144 LL--KNGANKDMQNNREETPLFLAAREGSYETAKVLLDHF--ANRDITDHMDRLPRDIAQ 199
Query: 76 IYDFDECARILVS 88
+ R+L
Sbjct: 200 ERMHHDIVRLLDE 212
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 125 bits (317), Expect = 8e-33
Identities = 48/310 (15%), Positives = 82/310 (26%), Gaps = 74/310 (23%)
Query: 319 GRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGES 378
G I + R G K+ S +
Sbjct: 1 GEVNKIIGS--------------------RTAGEGAMEYLIEWKDGHSPSWVPSSYIAAD 40
Query: 379 IGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQG 438
+ +E P +A D +A+ L + + T + G
Sbjct: 41 V-----------VSEYETPWWTAARKADEQALSQ-LLEDRDVDAVDENGRTALLFVAGLG 88
Query: 439 ALDIVRLMFNLQPSEKLVC----LNSTDAQ-KMTPLHCAAMFDRCDVVQYLIDEGADLNV 493
+ VRL L L+ D + +T LH AA + R +VV+ L++ GAD+ V
Sbjct: 89 SDKCVRL---------LAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEV 139
Query: 494 LDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEV 553
D+ + L LA ++ I L+ + +L + +
Sbjct: 140 EDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVIN-----VLEGQVFEYAE------ 188
Query: 554 AAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGL 613
I K + +L + + D E
Sbjct: 189 ------------VDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGV--HVA-EDVAKDYE-- 231
Query: 614 TPLHIASKEG 623
L A E
Sbjct: 232 DGLEYAVAES 241
Score = 113 bits (284), Expect = 2e-28
Identities = 38/313 (12%), Positives = 73/313 (23%), Gaps = 87/313 (27%)
Query: 281 NNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVK 340
+ + + P + + T AA ++ L
Sbjct: 12 AGEGAMEYLIEWKDGHSPSWVPSSYIAADVV-----SEYETPWWTAARKADEQALSQL-- 64
Query: 341 DFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHS 400
+ D +A + G L
Sbjct: 65 ----------------LEDRDVDAVDE-------------------------NGRTALLF 83
Query: 401 AVHGGDFKAVELCLKSGAKISTQ-QFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC-- 457
G K V L ++GA + + T +H+A ++V LV
Sbjct: 84 VAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEA---------LVELG 134
Query: 458 --LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVL 515
+ D + +T L A + + G + + +L + V
Sbjct: 135 ADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVIN----VLEGQVFEYAEV- 189
Query: 516 TLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNS 575
I+ K +++ +L+ GG + A K+
Sbjct: 190 ------DEIVEKRGKGKDVEYLVRWKDGGDCEWV------------KGVHVAEDVAKDY- 230
Query: 576 NESPLHLAARYGR 588
E L A
Sbjct: 231 -EDGLEYAVAESV 242
Score = 106 bits (268), Expect = 3e-26
Identities = 45/267 (16%), Positives = 81/267 (30%), Gaps = 53/267 (19%)
Query: 106 KRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGD 165
R G K+ S + + +E P +A D
Sbjct: 9 SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV-----------VSEYETPWWTAARKAD 57
Query: 166 FKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC----LNSTD 221
+A+ L + + T + G+ VRL L L+ D
Sbjct: 58 EQALSQ-LLEDRDVDAVDENGRTALLFVAGLGSDKCVRL---------LAEAGADLDHRD 107
Query: 222 AQ-KMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKT------NG 274
+ +T LH AA + R +VV+ L++ GAD+ V D+ + L LA G
Sbjct: 108 MRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFG 167
Query: 275 VNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDEC 334
+ +K + + I+ + G+ ++ D +C
Sbjct: 168 RR---IGLEKVINVLEGQVFEYAEVDEIVEKRG----------KGKDVEYLVRWKDGGDC 214
Query: 335 ARIL--------VKDFGASLKRACSNG 353
+ KD+ L+ A +
Sbjct: 215 EWVKGVHVAEDVAKDYEDGLEYAVAES 241
Score = 92.7 bits (231), Expect = 2e-21
Identities = 43/272 (15%), Positives = 74/272 (27%), Gaps = 56/272 (20%)
Query: 4 LSVQSDNKNKSRLIPS-SSGVNTRILNNKKQAVLHLATELNKVPILLILLQ-----YKDM 57
++ + + +PS + + ++ + A L LL+ D
Sbjct: 19 YLIEWKDGHSPSWVPSSYIAAD---VVSEYETPWWTAARKADEQALSQLLEDRDVDAVD- 74
Query: 58 IDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASL-KRACSNGYYPI 116
E+GRTAL A D+C R+L GA L R G +
Sbjct: 75 -------ENGRTALLFVAGLGSDKCVRLLAEA------------GADLDHRDMRGGLTAL 115
Query: 117 HDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSG 176
H AA + +E ++ G I D G L A ++ G
Sbjct: 116 HMAAGYVRPEVVEALVELGADIEVE--------DERGLTALELAREILKTTPKGNPMQFG 167
Query: 177 AKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDR 236
+I ++ V ++ + + + D
Sbjct: 168 RRIGLEK---VINVLEGQVFEYAEVDE-------------IVEKRGKGKDVEYLVRWKDG 211
Query: 237 CDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
D A+ D E L A +
Sbjct: 212 GDCEWVKGVHVAEDVAKDYE--DGLEYAVAES 241
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 124 bits (315), Expect = 1e-32
Identities = 55/310 (17%), Positives = 86/310 (27%), Gaps = 88/310 (28%)
Query: 317 EHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFG 376
E G + LH+A I++ +++ A N +
Sbjct: 6 EDGDSFLHLAIIHEEKALTMEVIR-------------QVKGDLAFLNFQNN--------- 43
Query: 377 ESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACS 436
PLH AV + E L +G + F +TP+HLAC
Sbjct: 44 ----------------LQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACE 87
Query: 437 QGALDIVR-LMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLD 495
QG L V L + L +T+ T LH A++ +V+ L+ GAD+N +
Sbjct: 88 QGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQE 147
Query: 496 KEK-RSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVA 554
R+ L LA V
Sbjct: 148 PCNGRTALHLAVDLQNPDLV---------------------------------------- 167
Query: 555 AVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLT 614
L+ GA +N SP L ++L + E
Sbjct: 168 -----SLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQ--LTL-ENLQMLPESED 219
Query: 615 PLHIASKEGF 624
++ F
Sbjct: 220 EESYDTESEF 229
Score = 113 bits (286), Expect = 1e-28
Identities = 48/261 (18%), Positives = 89/261 (34%), Gaps = 34/261 (13%)
Query: 111 NGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVE 170
+G +H A + ++ + ++ + PLH AV + E
Sbjct: 7 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAF----LNFQNNLQQTPLHLAVITNQPEIAE 62
Query: 171 LCLKSGAKISTQQFDLSTPVHLACSQGALDIVR-LMFNLQPSEKLVCLNSTDAQKMTPLH 229
L +G + F +TP+HLAC QG L V L + L +T+ T LH
Sbjct: 63 ALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLH 122
Query: 230 CAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLH 289
A++ +V+ L+ GAD+N + NG + LH
Sbjct: 123 LASIHGYLGIVELLVSLGADVNAQE----------------PCNG----------RTALH 156
Query: 290 LATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRA 349
LA +L ++ +LL+ D+ + G + + + L + +
Sbjct: 157 LAVDLQNPDLVSLLLKCG--ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQ-LTLENLQM 213
Query: 350 CSNGYYPIHDAAKNASSKTME 370
++ ++ E
Sbjct: 214 LPESEDEESYDTESEFTEFTE 234
Score = 108 bits (273), Expect = 5e-27
Identities = 44/202 (21%), Positives = 79/202 (39%), Gaps = 17/202 (8%)
Query: 188 TPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEG 247
+ +HLA + + + LN + + TPLH A + ++ ++ + L+ G
Sbjct: 10 SFLHLAIIHEEKALTMEVIRQVKGDL-AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG 68
Query: 248 ADLNVLDKEKRSPLLLAASRGGWKT------NGVNTRIL------NNKKQAVLHLATELN 295
D + D +PL LA +G + + + N LHLA+
Sbjct: 69 CDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHG 128
Query: 296 KVPILLILLQYKDMIDI-LQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGY 354
+ I+ +L+ D+ Q +GRTALH+A + +L+ GA + R GY
Sbjct: 129 YLGIVELLVSLG--ADVNAQEPCNGRTALHLAVDLQNPDLVSLLL-KCGADVNRVTYQGY 185
Query: 355 YPIHDAAKNASSKTMEVFLQFG 376
P S++ + Q
Sbjct: 186 SPYQLTWGRPSTRIQQQLGQLT 207
Score = 94.9 bits (237), Expect = 3e-22
Identities = 43/247 (17%), Positives = 65/247 (26%), Gaps = 55/247 (22%)
Query: 20 SSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDF 79
NN +Q LHLA N+ I LL D G T LH+A
Sbjct: 33 GDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG--CDPELRDFRGNTPLHLACEQGC 90
Query: 80 DECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIG 139
+L + S
Sbjct: 91 LASVGVLTQ----------------------------SCTTPHLHS-------------- 108
Query: 140 CSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQ-QFDLSTPVHLACSQGA 198
++ + G+ LH A G VEL + GA ++ Q + T +HLA
Sbjct: 109 -----ILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQN 163
Query: 199 LDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKR 258
D+V L+ + +N Q +P + Q L + + E
Sbjct: 164 PDLVSLLL-----KCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESE 218
Query: 259 SPLLLAA 265
Sbjct: 219 DEESYDT 225
Score = 72.2 bits (178), Expect = 2e-14
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 11/97 (11%)
Query: 527 KDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARY 586
+ + LHL +++ K EV + A +N +NN ++PLHLA
Sbjct: 4 LTEDGDSFLHLAIIHEE---KALTMEVI-----RQVKGDLAFLNFQNNLQQTPLHLAVIT 55
Query: 587 GRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
+ + LL G D G TPLH+A ++G
Sbjct: 56 NQPEIAEALLG--AGCD-PELRDFRGNTPLHLACEQG 89
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 123 bits (311), Expect = 1e-32
Identities = 45/198 (22%), Positives = 75/198 (37%), Gaps = 26/198 (13%)
Query: 426 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 485
+ + + + N D+ TPL A M + + L+
Sbjct: 7 NGEIVEKIKDEKSINQNLD-----------FLRNYRDSYNRTPLMVACMLGMENAIDKLV 55
Query: 486 DEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGH 545
+ L D E + L+ A L+ +N+ KD + + L ++ G+
Sbjct: 56 ENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIF--GY 113
Query: 546 IKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFII 605
E++ L+ GA +N +N E+PL +A++YGR VKKLL G+ I
Sbjct: 114 -----SEMS-----YFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLE--LGAD-I 160
Query: 606 NESDGEGLTPLHIASKEG 623
+ D GLT A G
Sbjct: 161 SARDLTGLTAEASARIFG 178
Score = 107 bits (271), Expect = 3e-27
Identities = 36/208 (17%), Positives = 78/208 (37%), Gaps = 23/208 (11%)
Query: 394 GNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSE 453
G + + ++ + + TP+ +AC G + + + E
Sbjct: 8 GEIVEKIKDEKSINQNLDFL------RNYRDSYNRTPLMVACMLGMENAIDKLV-----E 56
Query: 454 KLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKT 513
L D + T L A +R + + L+ +G+++N D ++PL+ + G +
Sbjct: 57 NFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEM 116
Query: 514 VLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKN 573
L+ + AN+ +++ L + G E+ + L+ LGA I+ ++
Sbjct: 117 SYFLLEHGANVNDRNLEGETPLIVASKYG--RS-----EIV-----KKLLELGADISARD 164
Query: 574 NSNESPLHLAARYGRYNTVKKLLSSERG 601
+ + A +GR +K R
Sbjct: 165 LTGLTAEASARIFGRQEVIKIFTEVRRA 192
Score = 99.0 bits (248), Expect = 4e-24
Identities = 42/167 (25%), Positives = 67/167 (40%), Gaps = 25/167 (14%)
Query: 459 NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADL--NVLDKEKRSPLLLAASRGGWKTVLT 516
+ D + I++ D N D R+PL++A G +
Sbjct: 2 SHMDKNGEIVEKIKD--------EKSINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDK 53
Query: 517 LVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSN 576
LV N + KDI L V N + +A E L++ G+ +N K+ S
Sbjct: 54 LVENFDKLEDKDIEGSTALIWAVKN--NRL-----GIA-----EKLLSKGSNVNTKDFSG 101
Query: 577 ESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
++PL + +G LL G+ +N+ + EG TPL +ASK G
Sbjct: 102 KTPLMWSIIFGYSEMSYFLLE--HGA-NVNDRNLEGETPLIVASKYG 145
Score = 97.5 bits (244), Expect = 1e-23
Identities = 40/240 (16%), Positives = 77/240 (32%), Gaps = 63/240 (26%)
Query: 279 ILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARIL 338
++ + V + E + L L Y+D + RT L +A + + L
Sbjct: 3 HMDKNGEIVEKIKDEKSINQNLDFLRNYRD--------SYNRTPLMVACMLGMENAIDKL 54
Query: 339 VKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPL 398
V+ + EG+ L
Sbjct: 55 VE-----------------NFDKLEDKDI-------------------------EGSTAL 72
Query: 399 HSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC- 457
AV E L G+ ++T+ F TP+ + G ++ L+
Sbjct: 73 IWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYF---------LLEH 123
Query: 458 ---LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTV 514
+N + + TPL A+ + R ++V+ L++ GAD++ D + A G + +
Sbjct: 124 GANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVI 183
Score = 96.3 bits (241), Expect = 4e-23
Identities = 41/246 (16%), Positives = 75/246 (30%), Gaps = 74/246 (30%)
Query: 27 ILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARIL 86
++ + V + E + L L Y+D + RT L +A + + L
Sbjct: 3 HMDKNGEIVEKIKDEKSINQNLDFLRNYRD--------SYNRTPLMVACMLGMENAIDKL 54
Query: 87 VSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMI 146
V +
Sbjct: 55 VE----------------------------NFDKLEDK---------------------- 64
Query: 147 SLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMF 206
D EG+ L AV E L G+ ++T+ F TP+ + G ++
Sbjct: 65 ---DIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYF-- 119
Query: 207 NLQPSEKLVC----LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLL 262
L+ +N + + TPL A+ + R ++V+ L++ GAD++ D +
Sbjct: 120 -------LLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEA 172
Query: 263 LAASRG 268
A G
Sbjct: 173 SARIFG 178
Score = 92.8 bits (232), Expect = 7e-22
Identities = 43/243 (17%), Positives = 85/243 (34%), Gaps = 61/243 (25%)
Query: 111 NGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVE 170
NG + + ++ ++ + D+ PL A G A++
Sbjct: 7 NGEIVEKIKDEKSINQNLDFL--------------RNYRDSYNRTPLMVACMLGMENAID 52
Query: 171 LCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC----LNSTDAQKMT 226
+++ K+ + + ST + A L I L+ +N+ D T
Sbjct: 53 KLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEK---------LLSKGSNVNTKDFSGKT 103
Query: 227 PLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQA 286
PL + +F ++ +L++ GA++N + E +PL++A+ + +
Sbjct: 104 PLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASK--------------YGRSEI 149
Query: 287 VLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASL 346
V + LL+ DI G TA A I+ E +I +
Sbjct: 150 V-----KK--------LLELG--ADISARDLTGLTAEASARIFGRQEVIKIFT-----EV 189
Query: 347 KRA 349
+RA
Sbjct: 190 RRA 192
Score = 88.6 bits (221), Expect = 2e-20
Identities = 30/195 (15%), Positives = 59/195 (30%), Gaps = 20/195 (10%)
Query: 185 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 244
+ + + + N D+ TPL A M + + L+
Sbjct: 7 NGEIVEKIKDEKSINQNLD-----------FLRNYRDSYNRTPLMVACMLGMENAIDKLV 55
Query: 245 DEGADLNVLDKEKRSPLLLAASRGGWKT------NGVNTRILNNKKQAVLHLATELNKVP 298
+ L D E + L+ A G N + + L +
Sbjct: 56 ENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSE 115
Query: 299 ILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIH 358
+ LL++ ++ G T L +A+ Y E + L+ + GA + G
Sbjct: 116 MSYFLLEHG--ANVNDRNLEGETPLIVASKYGRSEIVKKLL-ELGADISARDLTGLTAEA 172
Query: 359 DAAKNASSKTMEVFL 373
A + +++F
Sbjct: 173 SARIFGRQEVIKIFT 187
Score = 74.7 bits (185), Expect = 1e-15
Identities = 39/275 (14%), Positives = 77/275 (28%), Gaps = 94/275 (34%)
Query: 218 NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADL--NVLDKEKRSPLLLAASRGGWKTNGV 275
+ D + I++ D N D R+PL++A
Sbjct: 2 SHMDKNGEIVEKIKD--------EKSINQNLDFLRNYRDSYNRTPLMVACM--------- 44
Query: 276 NTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECA 335
+ A+ + L++ + G TAL A + A
Sbjct: 45 -----LGMENAI-----DK--------LVENF--DKLEDKDIEGSTALIWAVKNNRLGIA 84
Query: 336 RILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGN 395
L+ + N G
Sbjct: 85 EKLLS-----------------KGSNVNTKDF-------------------------SGK 102
Query: 396 LPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKL 455
PL ++ G + L+ GA ++ + + TP+ +A G +IV+ L
Sbjct: 103 TPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKK---------L 153
Query: 456 VC----LNSTDAQKMTPLHCAAMFDRCDVVQYLID 486
+ +++ D +T A +F R +V++ +
Sbjct: 154 LELGADISARDLTGLTAEASARIFGRQEVIKIFTE 188
Score = 39.3 bits (93), Expect = 0.001
Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 4/73 (5%)
Query: 16 LIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAA 75
L+ G N N + + L +A++ + I+ LL+ DI G TA A
Sbjct: 120 LL--EHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELG--ADISARDLTGLTAEASAR 175
Query: 76 IYDFDECARILVS 88
I+ E +I
Sbjct: 176 IFGRQEVIKIFTE 188
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 122 bits (308), Expect = 2e-32
Identities = 51/198 (25%), Positives = 77/198 (38%), Gaps = 25/198 (12%)
Query: 426 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 485
+ + C +G VRL LN D +PLH A R VV+ LI
Sbjct: 4 EFMDDIFTQCREGNAVAVRLWL----DNTENDLNQGDDHGFSPLHWACREGRSAVVEMLI 59
Query: 486 DEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGH 545
GA +NV+++ +PL LAAS G V L++ KA+I + + LH G
Sbjct: 60 MRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFW--GQ 117
Query: 546 IKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFII 605
+VA E+L+ GA +++ N E P+ A R ++ G +
Sbjct: 118 D-----QVA-----EDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEK--MGQ-NL 164
Query: 606 NESDGEGLTPLHIASKEG 623
N P +G
Sbjct: 165 NR------IPYKDTFWKG 176
Score = 100 bits (253), Expect = 6e-25
Identities = 41/185 (22%), Positives = 62/185 (33%), Gaps = 19/185 (10%)
Query: 185 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 244
+ + C +G VRL LN D +PLH A R VV+ LI
Sbjct: 4 EFMDDIFTQCREGNAVAVRLWL----DNTENDLNQGDDHGFSPLHWACREGRSAVVEMLI 59
Query: 245 DEGADLNVLDKEKRSPLLLAASRGGWKT------NGVNTRILNNKKQAVLHLATELNKVP 298
GA +NV+++ +PL LAAS G + +N LH A +
Sbjct: 60 MRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQ 119
Query: 299 ILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIH 358
+ L+ + ++G + A + K G +L R P
Sbjct: 120 VAEDLVANG--ALVSICNKYGEMPVDKAKAPLRELLRERAEK-MGQNLNRI------PYK 170
Query: 359 DAAKN 363
D
Sbjct: 171 DTFWK 175
Score = 98.3 bits (246), Expect = 5e-24
Identities = 38/214 (17%), Positives = 66/214 (30%), Gaps = 54/214 (25%)
Query: 315 GGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQ 374
G + R+ + N ++ +
Sbjct: 1 GSPEFMDDIFTQCREGNAVAVRLWL-----------DNTENDLNQGDDH----------- 38
Query: 375 FGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLA 434
G PLH A G VE+ + GA+I+ TP+HLA
Sbjct: 39 -------------------GFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLA 79
Query: 435 CSQGALDIVRLMFNLQPSEKLVC----LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGAD 490
S G DIV+ L+ +N+ + PLH A + + V + L+ GA
Sbjct: 80 ASHGHRDIVQK---------LLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGAL 130
Query: 491 LNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANI 524
+++ +K P+ A + + N+
Sbjct: 131 VSICNKYGEMPVDKAKAPLRELLRERAEKMGQNL 164
Score = 90.2 bits (225), Expect = 4e-21
Identities = 38/210 (18%), Positives = 65/210 (30%), Gaps = 38/210 (18%)
Query: 63 GGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKN 122
G + R+ + E D + D +G+ P+H A +
Sbjct: 1 GSPEFMDDIFTQCREGNAVAVRLWLD-NTEND-LNQGD---------DHGFSPLHWACRE 49
Query: 123 ASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQ 182
S +E+ + G I + + PLH A G V+ L+ A I+
Sbjct: 50 GRSAVVEMLIMRGARINVM--------NRGDDTPLHLAASHGHRDIVQKLLQYKADINAV 101
Query: 183 QFDLSTPVHLACSQGALDIVRLMFNLQPSEKLV----CLNSTDAQKMTPLHCAAMFDRCD 238
+ P+H AC G + LV ++ + P+ A R
Sbjct: 102 NEHGNVPLHYACFWGQDQVAED---------LVANGALVSICNKYGEMPVDKAKAPLREL 152
Query: 239 VVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
+ + G +LN R P +G
Sbjct: 153 LRERAEKMGQNLN------RIPYKDTFWKG 176
Score = 83.3 bits (207), Expect = 1e-18
Identities = 39/223 (17%), Positives = 60/223 (26%), Gaps = 74/223 (33%)
Query: 225 MTPLHCAAMFDRCDVVQYLIDEGA-DLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNK 283
M + V+ +D DLN D SPL A G
Sbjct: 6 MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREG--------------- 50
Query: 284 KQAVLHLAT-ELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDF 342
A E+ L+ I T LH+AA + + + L++
Sbjct: 51 -----RSAVVEM--------LIMRG--ARINVMNRGDDTPLHLAASHGHRDIVQKLLQ-- 93
Query: 343 GASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAV 402
+ A NA ++ GN+PLH A
Sbjct: 94 ---------------YKADINAVNE-------------------------HGNVPLHYAC 113
Query: 403 HGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRL 445
G + E + +GA +S PV A + +
Sbjct: 114 FWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRER 156
Score = 78.6 bits (195), Expect = 4e-17
Identities = 38/134 (28%), Positives = 52/134 (38%), Gaps = 24/134 (17%)
Query: 495 DKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNI-----LHLLVLNGGGHIKEF 549
E + G V + N N D+N+ + LH G
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWLDNTEN----DLNQGDDHGFSPLHWACRE--GRS--- 52
Query: 550 AEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESD 609
V E LI GA IN+ N +++PLHLAA +G + V+KLL + IN +
Sbjct: 53 --AVV-----EMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQ--YKAD-INAVN 102
Query: 610 GEGLTPLHIASKEG 623
G PLH A G
Sbjct: 103 EHGNVPLHYACFWG 116
Score = 73.6 bits (182), Expect = 2e-15
Identities = 33/169 (19%), Positives = 57/169 (33%), Gaps = 21/169 (12%)
Query: 36 LHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDW 95
+ + + L + D+ QG +HG + LH A +L+
Sbjct: 9 IFTQCREGNAVAVRLWLDNTE-NDLNQGDDHGFSPLHWACREGRSAVVEMLIMR------ 61
Query: 96 IMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNL 155
GA + P+H AA + ++ LQ+ I + + GN+
Sbjct: 62 ------GARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI----NAV----NEHGNV 107
Query: 156 PLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRL 204
PLH A G + E + +GA +S PV A + +
Sbjct: 108 PLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRER 156
Score = 40.5 bits (96), Expect = 4e-04
Identities = 13/107 (12%), Positives = 25/107 (23%), Gaps = 22/107 (20%)
Query: 16 LIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAA 75
L+ + +N LH A + + L+ + ++G + A
Sbjct: 91 LL--QYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANG--ALVSICNKYGEMPVDKAK 146
Query: 76 IYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKN 122
+ G +L R P D
Sbjct: 147 APLRELLRERAEKM------------GQNLNRI------PYKDTFWK 175
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 121 bits (307), Expect = 3e-32
Identities = 45/188 (23%), Positives = 80/188 (42%), Gaps = 19/188 (10%)
Query: 428 STPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDE 487
S +H +QG LD ++ + +N D + TPL A+ F + V++L++
Sbjct: 3 SLSIHQLAAQGELDQLKEHL----RKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEW 58
Query: 488 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 547
GAD ++L KE+ S L LA++ G V L+ +I + D N L V H+
Sbjct: 59 GADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRG--NHV- 115
Query: 548 EFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINE 607
+ E L+ GA + + +S +P+ LA G + + + + +
Sbjct: 116 ----KCV-----EALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIEN--HIL-KLFQ 163
Query: 608 SDGEGLTP 615
S+ P
Sbjct: 164 SNLVPADP 171
Score = 99.8 bits (250), Expect = 1e-24
Identities = 37/216 (17%), Positives = 65/216 (30%), Gaps = 54/216 (25%)
Query: 319 GRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGES 378
++H A + + + G ++ + T
Sbjct: 2 DSLSIHQLAAQGELDQLKEHL-----------RKGDNLVN--KPDERGFT---------- 38
Query: 379 IGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQG 438
PL A G+ + V L+ GA + + + LA + G
Sbjct: 39 ------------------PLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGG 80
Query: 439 ALDIVRLMFNLQPSEKLVC----LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVL 494
DIV L L+ +N D TPL A + V+ L+ GADL
Sbjct: 81 YTDIVGL---------LLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTE 131
Query: 495 DKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDIN 530
+P+ LA + G K + + + ++
Sbjct: 132 ADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLV 167
Score = 98.6 bits (247), Expect = 4e-24
Identities = 40/176 (22%), Positives = 72/176 (40%), Gaps = 13/176 (7%)
Query: 187 STPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDE 246
S +H +QG LD ++ + +N D + TPL A+ F + V++L++
Sbjct: 3 SLSIHQLAAQGELDQLKEHL----RKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEW 58
Query: 247 GADLNVLDKEKRSPLLLAASRGGWKT------NGVNTRILNNKKQAVLHLATELNKVPIL 300
GAD ++L KE+ S L LA++ G V+ I + L A N V +
Sbjct: 59 GADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCV 118
Query: 301 LILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYP 356
LL D+ + G T + +A + + +++ L ++ P
Sbjct: 119 EALLARG--ADLTTEADSGYTPMDLAVALGYRKVQQVIENH-ILKLFQSNLVPADP 171
Score = 96.7 bits (242), Expect = 2e-23
Identities = 31/198 (15%), Positives = 58/198 (29%), Gaps = 32/198 (16%)
Query: 67 GRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSK 126
++H A + + + + + + D G+ P+ A+ +
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRK--GDNLVNKPD---------ERGFTPLIWASAFGEIE 50
Query: 127 TMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDL 186
T+ L++G E L A GG V L L+ I+ ++
Sbjct: 51 TVRFLLEWGADPHIL--------AKERESALSLASTGGYTDIVGLLLERDVDINIYDWNG 102
Query: 187 STPVHLACSQGALDIVRLMFNLQPSEKLVC----LNSTDAQKMTPLHCAAMFDRCDVVQY 242
TP+ A + V L+ L + TP+ A V Q
Sbjct: 103 GTPLLYAVRGNHVKCVEA---------LLARGADLTTEADSGYTPMDLAVALGYRKVQQV 153
Query: 243 LIDEGADLNVLDKEKRSP 260
+ + L + P
Sbjct: 154 IENHILKLFQSNLVPADP 171
Score = 92.9 bits (232), Expect = 4e-22
Identities = 33/159 (20%), Positives = 51/159 (32%), Gaps = 49/159 (30%)
Query: 466 MTPLHCAAMFDRCDVVQYLIDEGADL-NVLDKEKRSPLLLAASRGGWKTVLTLVRNKANI 524
+H A D ++ + +G +L N D+ +PL+ A++ G
Sbjct: 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFG--------------- 47
Query: 525 LLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAA 584
+ E L+ GA ++ ES L LA+
Sbjct: 48 -----------EI--------------ETV-----RFLLEWGADPHILAKERESALSLAS 77
Query: 585 RYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
G + V LL R IN D G TPL A +
Sbjct: 78 TGGYTDIVGLLLE--RDV-DINIYDWNGGTPLLYAVRGN 113
Score = 89.0 bits (222), Expect = 8e-21
Identities = 43/279 (15%), Positives = 74/279 (26%), Gaps = 112/279 (40%)
Query: 225 MTPLHCAAMFDRCDVVQYLIDEGADL-NVLDKEKRSPLLLAASRGGWKTNGVNTRILNNK 283
+H A D ++ + +G +L N D+ +PL+ A++ G
Sbjct: 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFG--------------- 47
Query: 284 KQAVLHLAT-ELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDF 342
+ T LL++ D + +AL +A+ + + +L++
Sbjct: 48 -----EIETVRF--------LLEWG--ADPHILAKERESALSLASTGGYTDIVGLLLE-- 90
Query: 343 GASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAV 402
D N G PL AV
Sbjct: 91 ---------------RDVDINIYDW-------------------------NGGTPLLYAV 110
Query: 403 HGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTD 462
G K VE L GA ++T+ TP+ LA + G
Sbjct: 111 RGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYR---------------------- 148
Query: 463 AQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSP 501
V Q + + L + P
Sbjct: 149 ----------------KVQQVIENHILKLFQSNLVPADP 171
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A {Synthetic
source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D*
3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B*
2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 120 bits (305), Expect = 5e-32
Identities = 51/166 (30%), Positives = 73/166 (43%), Gaps = 15/166 (9%)
Query: 458 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTL 517
+ + L AA R D V+ L+ GAD+N D +PL LAA G + V L
Sbjct: 7 HHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVL 66
Query: 518 VRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNE 577
++N A++ D L L L GH+ E+ E L+ GA +N +
Sbjct: 67 LKNGADVNAVDHAGMTPLRLAALF--GHL-----EIV-----EVLLKNGADVNANDMEGH 114
Query: 578 SPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
+PLHLAA +G V+ LL G+ +N D G T I+ G
Sbjct: 115 TPLHLAAMFGHLEIVEVLLK--NGA-DVNAQDKFGKTAFDISIDNG 157
Score = 110 bits (277), Expect = 3e-28
Identities = 48/176 (27%), Positives = 79/176 (44%), Gaps = 25/176 (14%)
Query: 426 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVC----LNSTDAQKMTPLHCAAMFDRCDVV 481
DL + A G D VR+ L+ +N+ DA TPLH AA ++V
Sbjct: 13 DLGKKLLEAARAGRDDEVRI---------LMANGADVNAEDASGWTPLHLAAFNGHLEIV 63
Query: 482 QYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLN 541
+ L+ GAD+N +D +PL LAA G + V L++N A++ D+ LHL +
Sbjct: 64 EVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMF 123
Query: 542 GGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLS 597
GH+ E+ E L+ GA +N ++ ++ ++ G + + L
Sbjct: 124 --GHL-----EIV-----EVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 94.7 bits (237), Expect = 8e-23
Identities = 53/196 (27%), Positives = 82/196 (41%), Gaps = 44/196 (22%)
Query: 150 DAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQ 209
++ L A G V + + +GA ++ + TP+HLA G L+IV +
Sbjct: 11 GSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEV----- 65
Query: 210 PSEKLVC----LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAA 265
L+ +N+ D MTPL AA+F ++V+ L+ GAD+N D E +PL LAA
Sbjct: 66 ----LLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAA 121
Query: 266 SRGGWKTNGVNTRILNNKKQAVLHLAT-ELNKVPILLILLQYKDMIDILQGGEHGRTALH 324
G HL E+ LL+ D+ + G+TA
Sbjct: 122 MFG--------------------HLEIVEV--------LLKNG--ADVNAQDKFGKTAFD 151
Query: 325 IAAIYDFDECARILVK 340
I+ ++ A IL K
Sbjct: 152 ISIDNGNEDLAEILQK 167
Score = 87.0 bits (217), Expect = 3e-20
Identities = 41/164 (25%), Positives = 67/164 (40%), Gaps = 9/164 (5%)
Query: 217 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKT---- 272
+ + L AA R D V+ L+ GAD+N D +PL LAA G +
Sbjct: 7 HHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVL 66
Query: 273 --NGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYD 330
NG + +++ L LA + I+ +LL+ D+ G T LH+AA++
Sbjct: 67 LKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNG--ADVNANDMEGHTPLHLAAMFG 124
Query: 331 FDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQ 374
E +L+K GA + G + N + E+ +
Sbjct: 125 HLEIVEVLLK-NGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 85.5 bits (213), Expect = 1e-19
Identities = 54/219 (24%), Positives = 81/219 (36%), Gaps = 73/219 (33%)
Query: 61 LQGGEH-------GRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGY 113
++G H L AA D+ RIL++
Sbjct: 1 MRGSHHHHHHGSDLGKKLLEAARAGRDDEVRILMA------------------------- 35
Query: 114 YPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCL 173
+ A NA DA G PLH A G + VE+ L
Sbjct: 36 ---NGADVNAE-------------------------DASGWTPLHLAAFNGHLEIVEVLL 67
Query: 174 KSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC----LNSTDAQKMTPLH 229
K+GA ++ TP+ LA G L+IV + L+ +N+ D + TPLH
Sbjct: 68 KNGADVNAVDHAGMTPLRLAALFGHLEIVEV---------LLKNGADVNANDMEGHTPLH 118
Query: 230 CAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
AAMF ++V+ L+ GAD+N DK ++ ++ G
Sbjct: 119 LAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNG 157
Score = 53.1 bits (129), Expect = 2e-08
Identities = 38/189 (20%), Positives = 65/189 (34%), Gaps = 57/189 (30%)
Query: 16 LIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAA 75
L+ ++G + + LHLA + I+ +LL+ D+ G T L +AA
Sbjct: 33 LM--ANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNG--ADVNAVDHAGMTPLRLAA 88
Query: 76 IYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFG 135
++ E +L+ + A NA+
Sbjct: 89 LFGHLEIVEVLLK----------------------------NGADVNAN----------- 109
Query: 136 ESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACS 195
D EG+ PLH A G + VE+ LK+GA ++ Q T ++
Sbjct: 110 --------------DMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISID 155
Query: 196 QGALDIVRL 204
G D+ +
Sbjct: 156 NGNEDLAEI 164
Score = 38.5 bits (91), Expect = 0.002
Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 16 LIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAA 75
L+ +G + + + LHLA + I+ +LL+ D+ + G+TA I+
Sbjct: 99 LL--KNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNG--ADVNAQDKFGKTAFDISI 154
Query: 76 IYDFDECARILVS 88
++ A IL
Sbjct: 155 DNGNEDLAEILQK 167
Score = 27.7 bits (63), Expect = 7.5
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 600 RGSFIINESDGEGLTPLHIASKEG 623
RGS + + L A++ G
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAG 25
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 124 bits (312), Expect = 5e-32
Identities = 46/265 (17%), Positives = 77/265 (29%), Gaps = 48/265 (18%)
Query: 397 PLHSAVHGGDFKAVELCL-------KSGAKISTQQFDL-STPVHLA---CSQGALDIVRL 445
+ AV + + +E L K + + T + A G D + L
Sbjct: 16 SIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIAL 75
Query: 446 M------FNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEK- 498
+ + + + T LH A +V L++ GAD+
Sbjct: 76 LLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDF 135
Query: 499 -------------RSPLLLAASRGGWKTVLTLVRN---KANILLKDINRRNILHLLVLNG 542
PL LAA V L++N A+I +D +LH LV
Sbjct: 136 FKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVA 195
Query: 543 GGHIKEFAEEVAAVFL----GENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSS 598
+ + G L + N +PL LAA G+ + +L
Sbjct: 196 DNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYIL-- 253
Query: 599 ERGSFIINESDGEGLTPLHIASKEG 623
+ + H A+
Sbjct: 254 --------QREIHEPECRHAAAHHH 270
Score = 99.5 bits (248), Expect = 2e-23
Identities = 43/278 (15%), Positives = 88/278 (31%), Gaps = 37/278 (13%)
Query: 20 SSGVNTRILNNKKQAVLHLATELNKVPILLILLQY-----KDMIDI-LQGGEHGRTALHI 73
S + + + A + L LL + K + D + E G+T L
Sbjct: 1 SVSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLK 60
Query: 74 AAI---YDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEV 130
A + ++ +L+ + D + + AS + G +H A + + + +
Sbjct: 61 AMLNLHNGQNDTIALLLDVARKTD-SLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTL 119
Query: 131 FLQFGESI------GCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSG---AKIST 181
++ G + ++ G LPL A V+ L++ A IS
Sbjct: 120 LVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISA 179
Query: 182 QQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLV-----------CLNSTDAQKMTPLHC 230
+ +T +H + F +++ T+ + +TPL
Sbjct: 180 RDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLAL 239
Query: 231 AAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
AA + V+ Y++ + AA
Sbjct: 240 AASSGKIGVLAYILQREIH-------EPECRHAAAHHH 270
Score = 93.7 bits (233), Expect = 2e-21
Identities = 41/309 (13%), Positives = 82/309 (26%), Gaps = 73/309 (23%)
Query: 188 TPVHLACSQGALDIVR--LMFNLQPSEKLVCLNSTD-AQKMTPLHCAAMFDRC---DVVQ 241
+ A +Q + L F + ++L D T L A + D +
Sbjct: 15 RSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIA 74
Query: 242 YLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILL 301
L+D + L + + K Q LH+A E + ++
Sbjct: 75 LLLDVARKTDSLK----------------QFVNASYTDSYYKGQTALHIAIERRNMTLVT 118
Query: 302 ILLQ------------YKDMIDILQGGEHGRTALHIAAIYDFDECARILVK--DFGASLK 347
+L++ + G G L +AA + + L++ A +
Sbjct: 119 LLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADIS 178
Query: 348 RACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDF 407
S G +H + A + N ++++
Sbjct: 179 ARDSVGNTVLHALVEVADNTV-------------------------DNTKFVTSMYNEIL 213
Query: 408 KAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMT 467
+ TP+ LA S G + ++ + + +
Sbjct: 214 ILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAY------------ILQREIHEPE 261
Query: 468 PLHCAAMFD 476
H AA
Sbjct: 262 CRHAAAHHH 270
Score = 91.4 bits (227), Expect = 1e-20
Identities = 37/212 (17%), Positives = 57/212 (26%), Gaps = 48/212 (22%)
Query: 429 TPVHLACSQGALDIVR--LMFNLQPSEKLVCLNSTD-AQKMTPLHCAAMFDRC---DVVQ 482
+ A +Q + L F + ++L D T L A + D +
Sbjct: 15 RSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIA 74
Query: 483 YLIDEGADLNVL-----------DKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINR 531
L+D + L + ++ L +A R V LV N A++
Sbjct: 75 LLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAA--- 131
Query: 532 RNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNT 591
E PL LAA +
Sbjct: 132 ----------------------------NGDFFKKTKGRPGFYFGELPLSLAACTNQLAI 163
Query: 592 VKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
VK LL + I+ D G T LH +
Sbjct: 164 VKFLLQNSWQPADISARDSVGNTVLHALVEVA 195
Score = 67.9 bits (166), Expect = 1e-12
Identities = 21/159 (13%), Positives = 39/159 (24%), Gaps = 25/159 (15%)
Query: 488 GADLNVLDKEKRSPLLLAASRGGWKTV-------LTLVRNKANILLKDINR-RNILHLLV 539
A R + A ++ + + + + KD + L +
Sbjct: 3 SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAM 62
Query: 540 LNGG-GH---IKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKL 595
LN G I + + +N A ++ LH+A V L
Sbjct: 63 LNLHNGQNDTIALLLDVARKTDSLKQFVN--ASYTDSYYKGQTALHIAIERRNMTLVTLL 120
Query: 596 LS-----------SERGSFIINESDGEGLTPLHIASKEG 623
+ G PL +A+
Sbjct: 121 VENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTN 159
Score = 43.2 bits (102), Expect = 1e-04
Identities = 12/62 (19%), Positives = 19/62 (30%), Gaps = 7/62 (11%)
Query: 565 LGACINLKNNSNESPLHLAARYGRYNTVKKLL-----SSERGSFIINESDGE-GLTPLHI 618
+ A + + A ++ LL S +R + D E G T L
Sbjct: 2 VSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLT-DSEFKDPETGKTCLLK 60
Query: 619 AS 620
A
Sbjct: 61 AM 62
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6,
ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 121 bits (306), Expect = 2e-31
Identities = 49/221 (22%), Positives = 84/221 (38%), Gaps = 28/221 (12%)
Query: 397 PLHSAVHGGDFKAVELCLKS-GAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKL 455
PL A D +A+ LK G ++ + T +H+A L+ ++ P
Sbjct: 6 PLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVF 65
Query: 456 VCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEK-------------RSPL 502
+ S + T LH A + ++V+ L+ GA ++ PL
Sbjct: 66 EPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPL 125
Query: 503 LLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENL 562
AA G + V L+ + A+I +D +LH+L+L K FA ++ L
Sbjct: 126 SFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPN---KTFACQMY-----NLL 177
Query: 563 INLGACINLK------NNSNESPLHLAARYGRYNTVKKLLS 597
++ +LK NN +P LA G + L+
Sbjct: 178 LSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQ 218
Score = 113 bits (286), Expect = 8e-29
Identities = 56/225 (24%), Positives = 86/225 (38%), Gaps = 19/225 (8%)
Query: 288 LHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLK 347
L LA + N V L LL+++ ++ Q G G TALHIAA+YD E A +L+ + L
Sbjct: 7 LLLAAKENDVQALSKLLKFEG-CEVHQRGAMGETALHIAALYDNLEAAMVLM-EAAPELV 64
Query: 348 RACSN-----GYYPIHDAAKNASSKTMEVFLQFGESI-----GCSREEMISLFAAEGNLP 397
G +H A N + + L G S+ G G P
Sbjct: 65 FEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHP 124
Query: 398 LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNL------QP 451
L A G + V L ++ GA I Q +T +H+ Q M+NL
Sbjct: 125 LSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGD 184
Query: 452 SEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDK 496
K + + Q +TP A + + Q+L+ + +
Sbjct: 185 HLKSL-ELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIAAAHH 228
Score = 111 bits (280), Expect = 5e-28
Identities = 56/236 (23%), Positives = 85/236 (36%), Gaps = 30/236 (12%)
Query: 36 LHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDW 95
L LA + N V L LL+++ ++ Q G G TALHIAA+YD E A +L+
Sbjct: 7 LLLAAKENDVQALSKLLKFEG-CEVHQRGAMGETALHIAALYDNLEAAMVLME------- 58
Query: 96 IMVKDFGASLKRACSN-----GYYPIHDAAKNASSKTMEVFLQFGESI-----GCSREEM 145
L G +H A N + + L G S+ G
Sbjct: 59 -----AAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYR 113
Query: 146 ISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLM 205
G PL A G + V L ++ GA I Q +T +H+ Q M
Sbjct: 114 PHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQM 173
Query: 206 FNL------QPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDK 255
+NL K + + Q +TP A + + Q+L+ + +
Sbjct: 174 YNLLLSYDGGDHLKSL-ELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIAAAHH 228
Score = 103 bits (258), Expect = 5e-25
Identities = 34/176 (19%), Positives = 63/176 (35%), Gaps = 34/176 (19%)
Query: 467 TPLHCAAMFDRCDVVQ-YLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANIL 525
+PL AA + + L EG +++ + L +AA + + L+ ++
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64
Query: 526 LKDINRRNI-----LHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSN---- 576
+ + LH+ V+N ++ + L+ GA ++ + +
Sbjct: 65 FEPMTSELYEGQTALHIAVINQ--NV-----NLV-----RALLARGASVSARATGSVFHY 112
Query: 577 ---------ESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
E PL AA G V+ L+ G+ I D G T LHI +
Sbjct: 113 RPHNLIYYGEHPLSFAACVGSEEIVRLLIE--HGA-DIRAQDSLGNTVLHILILQP 165
Score = 98.8 bits (247), Expect = 1e-23
Identities = 42/290 (14%), Positives = 83/290 (28%), Gaps = 61/290 (21%)
Query: 67 GRTALHIAAIY-DFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASS 125
+ L +AA D +++L E G + + + G +H AA +
Sbjct: 3 WESPLLLAAKENDVQALSKLLKFE------------GCEVHQRGAMGETALHIAALYDNL 50
Query: 126 KTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFD 185
+ V ++ + EG LH AV + V L GA +S +
Sbjct: 51 EAAMVLMEAAPELVFEPMTSE---LYEGQTALHIAVINQNVNLVRALLARGASVSARATG 107
Query: 186 LSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLID 245
++ PL AA ++V+ LI+
Sbjct: 108 SVFHYR-------------------------PHNLIYYGEHPLSFAACVGSEEIVRLLIE 142
Query: 246 EGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQ 305
GAD+ D + L + + +L + + + + L+
Sbjct: 143 HGADIRAQDSLGNTVLHILILQPNKTFACQMYNLL------LSYDG-GDHLKSLELV--- 192
Query: 306 YKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYY 355
G T +A + + L+ + A + ++
Sbjct: 193 ---------PNNQGLTPFKLAGVEGNIVMFQHLM-QKRKHIAAAHHHHHH 232
Score = 50.7 bits (122), Expect = 3e-07
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 577 ESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
ESPL LAA+ + KLL E +++ G T LHIA+
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEGCE--VHQRGAMGETALHIAALYD 48
Score = 38.7 bits (91), Expect = 0.003
Identities = 15/81 (18%), Positives = 24/81 (29%), Gaps = 10/81 (12%)
Query: 16 LIPSSSGVNTRILNNKKQAVLHLATELNKVPILL----ILLQYKDMID----ILQGGEHG 67
LI G + R ++ VLH+ +LL Y L G
Sbjct: 140 LI--EHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQG 197
Query: 68 RTALHIAAIYDFDECARILVS 88
T +A + + L+
Sbjct: 198 LTPFKLAGVEGNIVMFQHLMQ 218
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium,
SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo
sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 118 bits (298), Expect = 5e-31
Identities = 34/158 (21%), Positives = 60/158 (37%), Gaps = 15/158 (9%)
Query: 466 MTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANIL 525
+H A + I++ +N D+E +PL+ AA+ G V L++N A+
Sbjct: 4 SLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ 63
Query: 526 LKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAAR 585
L R + L L G + ++ + L++ G +N + + +PL A
Sbjct: 64 LLGKGRESALSLACSKG--YT-----DIV-----KMLLDCGVDVNEYDWNGGTPLLYAVH 111
Query: 586 YGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
VK LL G+ G + +A G
Sbjct: 112 GNHVKCVKMLLE--SGA-DPTIETDSGYNSMDLAVALG 146
Score = 114 bits (288), Expect = 8e-30
Identities = 43/170 (25%), Positives = 71/170 (41%), Gaps = 17/170 (10%)
Query: 428 STPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDE 487
S VH +QG + + E+ +N TD + TPL AA + VV++L+
Sbjct: 4 SLSVHQLAAQGEMLYLATRI-----EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQN 58
Query: 488 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 547
GAD +L K + S L LA S+G V L+ ++ D N L V H+
Sbjct: 59 GADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGN--HV- 115
Query: 548 EFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLS 597
+ + L+ GA ++ +S + + LA G + + + S
Sbjct: 116 ----KCV-----KMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIES 156
Score = 95.9 bits (240), Expect = 3e-23
Identities = 27/191 (14%), Positives = 49/191 (25%), Gaps = 25/191 (13%)
Query: 66 HGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASS 125
++H A + + + G+ P+ AA +
Sbjct: 2 ANSLSVHQLAAQGEMLYLATRIEQ------------ENVINHTDEEGFTPLMWAAAHGQI 49
Query: 126 KTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFD 185
+E LQ G L A G V++ L G ++ ++
Sbjct: 50 AVVEFLLQNGADPQLL--------GKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWN 101
Query: 186 LSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLID 245
TP+ A + V+++ E + A V Q +
Sbjct: 102 GGTPLLYAVHGNHVKCVKMLL-----ESGADPTIETDSGYNSMDLAVALGYRSVQQVIES 156
Query: 246 EGADLNVLDKE 256
L KE
Sbjct: 157 HLLKLLQNIKE 167
Score = 95.5 bits (239), Expect = 4e-23
Identities = 27/180 (15%), Positives = 50/180 (27%), Gaps = 14/180 (7%)
Query: 318 HGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGE 377
++H A ++ + G+ P+ AA + +E LQ G
Sbjct: 2 ANSLSVHQLAAQGEMLYLATRIEQ-ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGA 60
Query: 378 SIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQ 437
+ L A G V++ L G ++ ++ TP+ A
Sbjct: 61 DPQLLGKG--------RESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHG 112
Query: 438 GALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKE 497
+ V+++ E + A V Q + L KE
Sbjct: 113 NHVKCVKMLL-----ESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIKE 167
Score = 93.2 bits (233), Expect = 2e-22
Identities = 39/160 (24%), Positives = 65/160 (40%), Gaps = 13/160 (8%)
Query: 187 STPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDE 246
S VH +QG + + E+ +N TD + TPL AA + VV++L+
Sbjct: 4 SLSVHQLAAQGEMLYLATRI-----EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQN 58
Query: 247 GADLNVLDKEKRSPLLLAASRGGWKT------NGVNTRILNNKKQAVLHLATELNKVPIL 300
GAD +L K + S L LA S+G GV+ + L A N V +
Sbjct: 59 GADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCV 118
Query: 301 LILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVK 340
+LL+ D + G ++ +A + +++
Sbjct: 119 KMLLESG--ADPTIETDSGYNSMDLAVALGYRSVQQVIES 156
Score = 51.6 bits (125), Expect = 6e-08
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 575 SNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
+N +H A G + + + + +IN +D EG TPL A+ G
Sbjct: 2 ANSLSVHQLAAQGEMLYLATRIE--QEN-VINHTDEEGFTPLMWAAAHG 47
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 117 bits (297), Expect = 5e-31
Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 15/157 (9%)
Query: 467 TPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILL 526
L AA + + L+ ++N + R+ L G + L+ AN L
Sbjct: 7 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ-VMKLGNPEIARRLLLRGANPDL 65
Query: 527 KDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARY 586
KD ++H G + + + L+ A +N+++N PLHLAA+
Sbjct: 66 KDRTGFAVIHDAARAG--FL-----DTL-----QTLLEFQADVNIEDNEGNLPLHLAAKE 113
Query: 587 GRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
G V+ L+ + + + +G T +A G
Sbjct: 114 GHLRVVEFLVK--HTASNVGHRNHKGDTACDLARLYG 148
Score = 104 bits (263), Expect = 2e-26
Identities = 35/173 (20%), Positives = 71/173 (41%), Gaps = 19/173 (10%)
Query: 426 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 485
+ A ++G L+ + + + V +N+ + T L ++ + L+
Sbjct: 4 PWGNELASAAARGDLEQLTSLL-----QNNVNVNAQNGFGRTALQVMK-LGNPEIARRLL 57
Query: 486 DEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGH 545
GA+ ++ D+ + + AA G T+ TL+ +A++ ++D LHL G H
Sbjct: 58 LRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEG--H 115
Query: 546 IKEFAEEVAAVFLGENLINLGAC-INLKNNSNESPLHLAARYGRYNTVKKLLS 597
+ V E L+ A + +N+ ++ LA YGR V + +
Sbjct: 116 L-----RVV-----EFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 158
Score = 90.1 bits (225), Expect = 2e-21
Identities = 38/193 (19%), Positives = 64/193 (33%), Gaps = 42/193 (21%)
Query: 152 EGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPS 211
L SA GD + + L++ ++ Q T + + G +I R
Sbjct: 4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVM-KLGNPEIARR------- 55
Query: 212 EKLVC----LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASR 267
L+ + D +H AA D +Q L++ AD+N+ D E PL LAA
Sbjct: 56 --LLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAK- 112
Query: 268 GGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAA 327
+ V E L+ ++ G TA +A
Sbjct: 113 -------------EGHLRVV-----EF------LVK---HTASNVGHRNHKGDTACDLAR 145
Query: 328 IYDFDECARILVK 340
+Y +E ++
Sbjct: 146 LYGRNEVVSLMQA 158
Score = 83.2 bits (207), Expect = 7e-19
Identities = 30/185 (16%), Positives = 58/185 (31%), Gaps = 25/185 (13%)
Query: 64 GEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNA 123
E L AA E L+ ++ G +
Sbjct: 2 AEPWGNELASAAARGDLEQLTSLLQN------------NVNVNAQNGFGRTALQVMKLG- 48
Query: 124 SSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQ 183
+ + L G + + D G +H A G ++ L+ A ++ +
Sbjct: 49 NPEIARRLLLRGANP----DL----KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIED 100
Query: 184 FDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYL 243
+ + P+HLA +G L +V + + + + T A ++ R +VV +
Sbjct: 101 NEGNLPLHLAAKEGHLRVVEFLV----KHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Query: 244 IDEGA 248
GA
Sbjct: 157 QANGA 161
Score = 76.3 bits (189), Expect = 2e-16
Identities = 27/190 (14%), Positives = 58/190 (30%), Gaps = 37/190 (19%)
Query: 185 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 244
+ A ++G L+ + + + V +N+ + T L ++ + L+
Sbjct: 4 PWGNELASAAARGDLEQLTSLL-----QNNVNVNAQNGFGRTALQVMK-LGNPEIARRLL 57
Query: 245 DEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILL 304
GA+ ++ D+ + + AA + + LL
Sbjct: 58 LRGANPDLKDRTGFAVIHDAAR--------------AGFLDTL-----QT--------LL 90
Query: 305 QYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRA-CSNGYYPIHDAAKN 363
+++ D+ G LH+AA LV AS G A
Sbjct: 91 EFQ--ADVNIEDNEGNLPLHLAAKEGHLRVVEFLV-KHTASNVGHRNHKGDTACDLARLY 147
Query: 364 ASSKTMEVFL 373
++ + +
Sbjct: 148 GRNEVVSLMQ 157
Score = 47.0 bits (113), Expect = 2e-06
Identities = 11/49 (22%), Positives = 16/49 (32%), Gaps = 3/49 (6%)
Query: 573 NNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASK 621
+ L AA G + LL +N +G G T L +
Sbjct: 2 AEPWGNELASAAARGDLEQLTSLLQ--NNV-NVNAQNGFGRTALQVMKL 47
Score = 40.1 bits (95), Expect = 6e-04
Identities = 14/73 (19%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 16 LIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAA 75
L+ + I +N+ LHLA + + ++ L++ ++ G TA +A
Sbjct: 89 LL--EFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK-HTASNVGHRNHKGDTACDLAR 145
Query: 76 IYDFDECARILVS 88
+Y +E ++ +
Sbjct: 146 LYGRNEVVSLMQA 158
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 117 bits (296), Expect = 2e-30
Identities = 37/214 (17%), Positives = 83/214 (38%), Gaps = 28/214 (13%)
Query: 393 EGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPS 452
E L +A K E+ + ++ + +TP+++A ++I +
Sbjct: 5 EVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKA------- 57
Query: 453 EKLVC----LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGA-DLNVLDKEKRSPLLLAAS 507
L+ +N ++ +P A R +++ Y++ DLN ++ + L+ AA
Sbjct: 58 --LIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAE 115
Query: 508 RGGWKTVLTLVRN-KANILLKDINRRNILH---LLVLNGGGHIKEFAEEVAAVFLGENLI 563
+G V L+ + + +I ++ L L + +++ + L+
Sbjct: 116 KGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLY-----QDIV-----KLLM 165
Query: 564 NLGACINLKNNSNESPLHLAARYGRYNTVKKLLS 597
GA ++K+NS + + A + G K L
Sbjct: 166 ENGADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199
Score = 117 bits (295), Expect = 3e-30
Identities = 33/163 (20%), Positives = 54/163 (33%), Gaps = 15/163 (9%)
Query: 462 DAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNK 521
+ L A D V + L D ++ +D E +PL +A + L+
Sbjct: 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG 62
Query: 522 ANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGAC-INLKNNSNESPL 580
A+I L++ + G E+ ++ +N N + L
Sbjct: 63 ADINLQNSISDSPYLYAGAQ--GR-----TEIL-----AYMLKHATPDLNKHNRYGGNAL 110
Query: 581 HLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
AA G + VK LL G I+ + G T L A
Sbjct: 111 IPAAEKGHIDNVKLLLE--DGREDIDFQNDFGYTALIEAVGLR 151
Score = 114 bits (289), Expect = 2e-29
Identities = 39/205 (19%), Positives = 83/205 (40%), Gaps = 27/205 (13%)
Query: 426 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 485
++ + A + + ++ + ++ D + TPL+ A + ++ + LI
Sbjct: 5 EVGALLEAANQRDTKKVKEILQ-----DTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALI 59
Query: 486 DEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKA-NILLKDINRRNILHLLVLNGGG 544
D GAD+N+ + SP L A ++G + + ++++ ++ + N L G
Sbjct: 60 DRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEK--G 117
Query: 545 HIKEFAEEVAAVFLGENLINLG-ACINLKNNSNESPLHLAARYGRYN-----TVKKLLSS 598
HI + + L+ G I+ +N+ + L A N VK L+
Sbjct: 118 HI-----DNV-----KLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLME- 166
Query: 599 ERGSFIINESDGEGLTPLHIASKEG 623
G+ + D G T + A+++G
Sbjct: 167 -NGAD-QSIKDNSGRTAMDYANQKG 189
Score = 100 bits (251), Expect = 2e-24
Identities = 48/231 (20%), Positives = 82/231 (35%), Gaps = 37/231 (16%)
Query: 111 NGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVE 170
+ A + + K E+ +E+ D EGN PL+ AVH D + +
Sbjct: 5 EVGALLEAANQRDTKKVKEILQ----DTTYQVDEV----DTEGNTPLNIAVHNNDIEIAK 56
Query: 171 LCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHC 230
+ GA I+ Q +P A +QG +I+ M LN + L
Sbjct: 57 ALIDRGADINLQNSISDSPYLYAGAQGRTEILAYML----KHATPDLNKHNRYGGNALIP 112
Query: 231 AAMFDRCDVVQYLIDEG-ADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLH 289
AA D V+ L+++G D++ + + L+ A + V
Sbjct: 113 AAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGN---------QLYQDIV-- 161
Query: 290 LATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVK 340
+L L++ D GRTA+ A + E ++IL +
Sbjct: 162 ---KL--------LMENG--ADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199
Score = 90.6 bits (226), Expect = 4e-21
Identities = 37/202 (18%), Positives = 78/202 (38%), Gaps = 19/202 (9%)
Query: 185 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 244
++ + A + + ++ + ++ D + TPL+ A + ++ + LI
Sbjct: 5 EVGALLEAANQRDTKKVKEILQ-----DTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALI 59
Query: 245 DEGADLNVLDKEKRSPLLLAASRGGWKT-------NGVNTRILNNKKQAVLHLATELNKV 297
D GAD+N+ + SP L A ++G + + N L A E +
Sbjct: 60 DRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHI 119
Query: 298 PILLILLQYKDMIDILQGGEHGRTALHIAAIYDFD-----ECARILVKDFGASLKRACSN 352
+ +LL+ DI + G TAL A + ++L+ + GA ++
Sbjct: 120 DNVKLLLE-DGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLM-ENGADQSIKDNS 177
Query: 353 GYYPIHDAAKNASSKTMEVFLQ 374
G + A + ++ ++ Q
Sbjct: 178 GRTAMDYANQKGYTEISKILAQ 199
Score = 90.6 bits (226), Expect = 5e-21
Identities = 38/231 (16%), Positives = 77/231 (33%), Gaps = 43/231 (18%)
Query: 221 DAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKT------NG 274
+ L A D V + L D ++ +D E +PL +A + G
Sbjct: 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG 62
Query: 275 VNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDEC 334
+ + N+ + A + IL +L++ D+ + +G AL AA +
Sbjct: 63 ADINLQNSISDSPYLYAGAQGRTEILAYMLKHAT-PDLNKHNRYGGNALIPAAEKGHIDN 121
Query: 335 ARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEG 394
++L++D + GY + +A
Sbjct: 122 VKLLLEDGREDIDFQNDFGYTALIEAVGLREGN--------------------------- 154
Query: 395 NLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRL 445
L+ + V+L +++GA S + T + A +G +I ++
Sbjct: 155 --QLYQDI-------VKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKI 196
Score = 88.7 bits (221), Expect = 2e-20
Identities = 38/246 (15%), Positives = 74/246 (30%), Gaps = 65/246 (26%)
Query: 29 NNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVS 88
+ A+L A + + + IL + + G T L+IA + E A+ L+
Sbjct: 3 TYEVGALLEAANQRDTKKVKEILQDTT--YQVDEVDTEGNTPLNIAVHNNDIEIAKALID 60
Query: 89 EQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISL 148
A N
Sbjct: 61 ----------------------------RGADINLQ------------------------ 68
Query: 149 FDAEGNLPLHSAVHGGDFKAVELCLKSGAK-ISTQQFDLSTPVHLACSQGALDIVRLMFN 207
++ + P A G + + LK ++ + A +G +D V+L+
Sbjct: 69 -NSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLL- 126
Query: 208 LQPSEKLVCLNSTDAQKMTPLHCAAMFDRC-----DVVQYLIDEGADLNVLDKEKRSPLL 262
+ ++ + T L A D+V+ L++ GAD ++ D R+ +
Sbjct: 127 ---EDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMD 183
Query: 263 LAASRG 268
A +G
Sbjct: 184 YANQKG 189
Score = 85.2 bits (212), Expect = 3e-19
Identities = 40/235 (17%), Positives = 74/235 (31%), Gaps = 54/235 (22%)
Query: 281 NNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVK 340
+ A+L A + + + IL + + G T L+IA + E A+ L+
Sbjct: 3 TYEVGALLEAANQRDTKKVKEILQDTT--YQVDEVDTEGNTPLNIAVHNNDIEIAKALI- 59
Query: 341 DFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHS 400
D GA + S P A
Sbjct: 60 DRGADINLQNSISDSPYLYAGAQ------------------------------------- 82
Query: 401 AVHGGDFKAVELCLKSGAK-ISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLN 459
G + + LK ++ + A +G +D V+L+ + ++
Sbjct: 83 ----GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLL----EDGREDID 134
Query: 460 STDAQKMTPLHCAAMFDRC-----DVVQYLIDEGADLNVLDKEKRSPLLLAASRG 509
+ T L A D+V+ L++ GAD ++ D R+ + A +G
Sbjct: 135 FQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKG 189
Score = 51.7 bits (125), Expect = 9e-08
Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Query: 571 LKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
+K + L A + + L ++E D EG TPL+IA
Sbjct: 1 MKTYEVGALLEAANQRDTKKVKEILQD--TTY-QVDEVDTEGNTPLNIAVHNN 50
Score = 33.2 bits (77), Expect = 0.15
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 65 EHGRTALHIAAIYDFDECARILVS 88
GRTA+ A + E ++IL
Sbjct: 176 NSGRTAMDYANQKGYTEISKILAQ 199
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 114 bits (288), Expect = 5e-30
Identities = 39/157 (24%), Positives = 59/157 (37%), Gaps = 16/157 (10%)
Query: 467 TPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILL 526
L AA + D V+ L+ GA D SPL LAA G + T L+R +
Sbjct: 4 KKLLEAARAGQDDEVRILMANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA 62
Query: 527 KDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARY 586
+ R LH+ G H + E L+ GA +N K+ + LH A +
Sbjct: 63 RTKVDRTPLHMAASEG--HA-----NIV-----EVLLKHGADVNAKDMLKMTALHWATEH 110
Query: 587 GRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
V+ L+ G+ ++ T I+ G
Sbjct: 111 NHQEVVELLIK--YGA-DVHTQSKFCKTAFDISIDNG 144
Score = 103 bits (260), Expect = 4e-26
Identities = 42/176 (23%), Positives = 70/176 (39%), Gaps = 30/176 (17%)
Query: 426 DLSTPVHLACSQGALDIVRLM------FNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCD 479
DL + A G D VR++ F TD +PLH AA +
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAPFT------------TDWLGTSPLHLAAQYGHFS 48
Query: 480 VVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLV 539
+ L+ G + K R+PL +AAS G V L+++ A++ KD+ + LH
Sbjct: 49 TTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWAT 108
Query: 540 LNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKL 595
+ H EV E LI GA ++ ++ ++ ++ G + + L
Sbjct: 109 EHN--HQ-----EVV-----ELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 88.6 bits (221), Expect = 6e-21
Identities = 42/191 (21%), Positives = 71/191 (37%), Gaps = 43/191 (22%)
Query: 152 EGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPS 211
+ L A G V + + +GA +T ++P+HLA G +
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAPFTTDWLG-TSPLHLAAQYGHFSTTEV------- 52
Query: 212 EKLVC----LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASR 267
L+ ++ TPLH AA ++V+ L+ GAD+N D K + L A
Sbjct: 53 --LLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATE- 109
Query: 268 GGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAA 327
+N ++ V EL L++Y D+ + +TA I+
Sbjct: 110 -------------HNHQEVV-----EL--------LIKYG--ADVHTQSKFCKTAFDISI 141
Query: 328 IYDFDECARIL 338
++ A IL
Sbjct: 142 DNGNEDLAEIL 152
Score = 84.4 bits (210), Expect = 2e-19
Identities = 40/162 (24%), Positives = 68/162 (41%), Gaps = 22/162 (13%)
Query: 111 NGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVE 170
+ + +AA+ + + + G D G PLH A G F E
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAPFTT---------DWLGTSPLHLAAQYGHFSTTE 51
Query: 171 LCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC----LNSTDAQKMT 226
+ L++G + TP+H+A S+G +IV + L+ +N+ D KMT
Sbjct: 52 VLLRAGVSRDARTKVDRTPLHMAASEGHANIVEV---------LLKHGADVNAKDMLKMT 102
Query: 227 PLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
LH A + +VV+ LI GAD++ K ++ ++ G
Sbjct: 103 ALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNG 144
Score = 83.6 bits (208), Expect = 4e-19
Identities = 44/195 (22%), Positives = 70/195 (35%), Gaps = 56/195 (28%)
Query: 319 GRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGES 378
L AA D+ RIL+ +NG + +
Sbjct: 2 LGKKLLEAARAGQDDEVRILM-----------ANG----APFTTDWLGTS---------- 36
Query: 379 IGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQG 438
PLH A G F E+ L++G + TP+H+A S+G
Sbjct: 37 ------------------PLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEG 78
Query: 439 ALDIVRLMFNLQPSEKLVC----LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVL 494
+IV + L+ +N+ D KMT LH A + +VV+ LI GAD++
Sbjct: 79 HANIVEV---------LLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQ 129
Query: 495 DKEKRSPLLLAASRG 509
K ++ ++ G
Sbjct: 130 SKFCKTAFDISIDNG 144
Score = 79.4 bits (197), Expect = 1e-17
Identities = 44/220 (20%), Positives = 61/220 (27%), Gaps = 72/220 (32%)
Query: 226 TPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQ 285
L AA + D V+ L+ GA D SPL LAA
Sbjct: 4 KKLLEAARAGQDDEVRILMANGAPFTT-DWLGTSPLHLAAQ--------------YGHFS 48
Query: 286 AVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGAS 345
E+ LL+ + + RT LH+AA +L+K
Sbjct: 49 TT-----EV--------LLRAG--VSRDARTKVDRTPLHMAASEGHANIVEVLLK----- 88
Query: 346 LKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGG 405
H A NA LH A
Sbjct: 89 ------------HGADVNAKDM-------------------------LKMTALHWATEHN 111
Query: 406 DFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRL 445
+ VEL +K GA + TQ T ++ G D+ +
Sbjct: 112 HQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEI 151
Score = 67.0 bits (165), Expect = 2e-13
Identities = 37/174 (21%), Positives = 56/174 (32%), Gaps = 33/174 (18%)
Query: 36 LHLATELNKVPILLILLQY-----KDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQ 90
L A + + IL+ D G + LH+AA Y +L+
Sbjct: 6 LLEAARAGQDDEVRILMANGAPFTTD--------WLGTSPLHLAAQYGHFSTTEVLLRA- 56
Query: 91 PECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFD 150
G S P+H AA + +EV L+ G + D
Sbjct: 57 -----------GVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADV----NAK----D 97
Query: 151 AEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRL 204
LH A + VEL +K GA + TQ T ++ G D+ +
Sbjct: 98 MLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEI 151
Score = 38.9 bits (92), Expect = 0.001
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 16 LIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAA 75
L+ G + + K LH ATE N ++ +L++Y D+ + +TA I+
Sbjct: 86 LL--KHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYG--ADVHTQSKFCKTAFDISI 141
Query: 76 IYDFDECARIL 86
++ A IL
Sbjct: 142 DNGNEDLAEIL 152
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 116 bits (293), Expect = 9e-30
Identities = 39/218 (17%), Positives = 73/218 (33%), Gaps = 23/218 (10%)
Query: 410 VELCLKSGAKISTQ---QFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKM 466
+ L+ + + + A G L++V+ ++ + + + +
Sbjct: 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVK-----EMNDPSQPNEEGI 55
Query: 467 TPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILL 526
T LH A +V +LI GA++N D +PL AAS + LV++ A I
Sbjct: 56 TALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFA 115
Query: 527 KDINRRNI-LHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAAR 585
++ G+ + A L ++ + L N+ L +
Sbjct: 116 TTLSDGATAFEKCDPYREGY-----ADCA-----TYLADVEQSMGLMNSGAVYALWDYSA 165
Query: 586 YGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
+L E S + DG T A+ G
Sbjct: 166 ----EFGDELSFREGESVTVLRRDGPEETDWWWAALHG 199
Score = 102 bits (257), Expect = 6e-25
Identities = 38/212 (17%), Positives = 69/212 (32%), Gaps = 33/212 (15%)
Query: 394 GNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSE 453
+ L A G+ + V+ +K S + T +H A IV
Sbjct: 21 PLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDF-------- 72
Query: 454 KLV----CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLD-KEKRSPLLLAAS- 507
L+ +NS D+ TPLHCAA + + L+ GA + + +
Sbjct: 73 -LITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPY 131
Query: 508 -RGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLG 566
G L + ++ L + L + EF +E+ G
Sbjct: 132 REGYADCATYLADVEQSMGLMNSGAVYALWD-------YSAEFGDEL--------SFREG 176
Query: 567 ACINL--KNNSNESPLHLAARYGRYNTVKKLL 596
+ + ++ E+ AA +G+ V +
Sbjct: 177 ESVTVLRRDGPEETDWWWAALHGQEGYVPRNY 208
Score = 88.9 bits (221), Expect = 4e-20
Identities = 40/273 (14%), Positives = 82/273 (30%), Gaps = 77/273 (28%)
Query: 240 VQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPI 299
++ ++ + + + +PL +L A ++ +
Sbjct: 1 MRSVLRKAGSPRKARRARLNPL------------------------VLLLDAALTGELEV 36
Query: 300 LLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHD 359
+ + K+M D Q E G TALH A L+ GA++ S+G+ P+H
Sbjct: 37 VQQAV--KEMNDPSQPNEEGITALHNAICGANYSIVDFLI-TAGANVNSPDSHGWTPLHC 93
Query: 360 AAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAK 419
AA D ++ GA
Sbjct: 94 AASC-----------------------------------------NDTVICMALVQHGAA 112
Query: 420 I-STQQFDLSTPVHLA--CSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFD 476
I +T D +T +G D + +++ + + ++ + L + +
Sbjct: 113 IFATTLSDGATAFEKCDPYREGYADCATYLADVE--QS---MGLMNSGAVYALWDYSA-E 166
Query: 477 RCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 509
D + + E + D + + AA G
Sbjct: 167 FGDELSFREGESVTVLRRDGPEETDWWWAALHG 199
Score = 88.9 bits (221), Expect = 4e-20
Identities = 38/237 (16%), Positives = 73/237 (30%), Gaps = 36/237 (15%)
Query: 352 NGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVE 411
N + DAA + ++ ++ EE G LH+A+ G ++ V+
Sbjct: 20 NPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEE--------GITALHNAICGANYSIVD 71
Query: 412 LCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLV----CLNSTDAQK-M 466
+ +GA +++ TP+H A S I LV + +T
Sbjct: 72 FLITAGANVNSPDSHGWTPLHCAASCNDTVICMA---------LVQHGAAIFATTLSDGA 122
Query: 467 TPLHCAAMFDRC--DVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANI 524
T + D YL D + +++ L ++ G + +
Sbjct: 123 TAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFG-DELSFREGESVTV 181
Query: 525 LLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLH 581
L +D L+G E + N L + + + + H
Sbjct: 182 LRRDGPEETDWWWAALHG-------QEGY----VPRNYFGLFPRVKPQRSKVKHHHH 227
Score = 88.1 bits (219), Expect = 7e-20
Identities = 34/227 (14%), Positives = 67/227 (29%), Gaps = 54/227 (23%)
Query: 111 NGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVE 170
N + DAA + ++ ++ + EG LH+A+ G ++ V+
Sbjct: 20 NPLVLLLDAALTGELEVVQQAVKEMNDPSQP--------NEEGITALHNAICGANYSIVD 71
Query: 171 LCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLV----CLNSTDAQK-M 225
+ +GA +++ TP+H A S I LV + +T
Sbjct: 72 FLITAGANVNSPDSHGWTPLHCAASCNDTVICMA---------LVQHGAAIFATTLSDGA 122
Query: 226 TPLHCAAMFDRC--DVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNK 283
T + D YL D + +++ L ++ G
Sbjct: 123 TAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFG-------------- 168
Query: 284 KQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYD 330
L + + +L+ T AA++
Sbjct: 169 --------------DELSFREG--ESVTVLRRDGPEETDWWWAALHG 199
Score = 87.7 bits (218), Expect = 8e-20
Identities = 47/270 (17%), Positives = 81/270 (30%), Gaps = 49/270 (18%)
Query: 169 VELCLKSGAKISTQ---QFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKM 225
+ L+ + + + A G L++V+ ++ + + + +
Sbjct: 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVK-----EMNDPSQPNEEGI 55
Query: 226 TPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQ 285
T LH A +V +LI GA++N D +PL AAS N
Sbjct: 56 TALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAAS--------------CNDTV 101
Query: 286 AVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYD--FDECARILVKDFG 343
L+Q+ I G TA Y + +CA L D
Sbjct: 102 IC-----MA--------LVQHGAAIFA-TTLSDGATAFEKCDPYREGYADCATYLA-DVE 146
Query: 344 ASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVH 403
S+ S Y + D + E+ + GES+ R + A
Sbjct: 147 QSMGLMNSGAVYALWDYSAE---FGDELSFREGESVTVLRRD------GPEETDWWWAAL 197
Query: 404 GGDFKAVE-LCLKSGAKISTQQFDLSTPVH 432
G V ++ Q+ + H
Sbjct: 198 HGQEGYVPRNYFGLFPRVKPQRSKVKHHHH 227
Score = 78.1 bits (193), Expect = 2e-16
Identities = 39/255 (15%), Positives = 73/255 (28%), Gaps = 67/255 (26%)
Query: 20 SSGVNTRILNNKK---QAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAI 76
+ R + +L A ++ ++ + K+M D Q E G TALH A
Sbjct: 6 RKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAV--KEMNDPSQPNEEGITALHNAIC 63
Query: 77 YDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGE 136
L++ A N+
Sbjct: 64 GANYSIVDFLIT----------------------------AGANVNSP------------ 83
Query: 137 SIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKI-STQQFDLSTPVHLA-- 193
D+ G PLH A D ++ GA I +T D +T
Sbjct: 84 -------------DSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDP 130
Query: 194 CSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVL 253
+G D + +++ + + ++ + L + + D + + E +
Sbjct: 131 YREGYADCATYLADVE--QS---MGLMNSGAVYALWDYSA-EFGDELSFREGESVTVLRR 184
Query: 254 DKEKRSPLLLAASRG 268
D + + AA G
Sbjct: 185 DGPEETDWWWAALHG 199
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 115 bits (289), Expect = 4e-29
Identities = 26/202 (12%), Positives = 57/202 (28%), Gaps = 32/202 (15%)
Query: 429 TPVHLACSQGALDIVRLMFNLQPSEKLV----CLNSTDAQKMTPLHCAAMFDRCDVVQYL 484
+ + + + L +++ D+VQ +
Sbjct: 7 VSLPPGKRTNLRKTGSE---------RIAHGMRVKFNP-LPLALLLDSSLEGEFDLVQRI 56
Query: 485 IDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGG 544
I E D ++ + E + L A G + V LV+ N+ D + LH
Sbjct: 57 IYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASC--N 114
Query: 545 HIKEFAEEVAAVFLGENLINLGACINLKNNSNE---SPLHLAARYGRYNTVKKLLSSERG 601
++ +V + L+ GA + S+ + G + L +
Sbjct: 115 NV-----QVC-----KFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEK 164
Query: 602 SFIINESDGEGLTPLHIASKEG 623
+ + + L +
Sbjct: 165 ---MGIMNKGVIYALWDYEPQN 183
Score = 106 bits (267), Expect = 3e-26
Identities = 26/229 (11%), Positives = 65/229 (28%), Gaps = 19/229 (8%)
Query: 319 GRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGES 378
G+ +L + + + G +K + D++ ++ + +
Sbjct: 5 GQVSLPPGKRTNLRKTGSERI-AHGMRVK-FNPLPLALLLDSSLEGEFDLVQRIIYEVDD 62
Query: 379 IGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQG 438
+E G LH+AV G + V+ ++ G ++ D TP+H A S
Sbjct: 63 PSLPNDE--------GITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCN 114
Query: 439 ALDIVRLMFNL--QPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDK 496
+ + + + +D Q Q+L + +++K
Sbjct: 115 NVQVCKFLVESGAAVFAM----TYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNK 170
Query: 497 EKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGH 545
L + ++ + + + +
Sbjct: 171 GVIYALWDYEPQND---DELPMKEGDCMTIIHREDEDEIEWWWARLNDK 216
Score = 104 bits (261), Expect = 2e-25
Identities = 41/233 (17%), Positives = 75/233 (32%), Gaps = 34/233 (14%)
Query: 111 NGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVE 170
G + + KT + G + F+ L + G+F V+
Sbjct: 4 TGQVSLPPGKRTNLRKTGSERIAHGMRVK---------FNPLPLALLLDSSLEGEFDLVQ 54
Query: 171 LCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC----LNSTDAQKMT 226
+ S + T +H A G +IV+ LV +N+ D+ T
Sbjct: 55 RIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKF---------LVQFGVNVNAADSDGWT 105
Query: 227 PLHCAAMFDRCDVVQYLIDEGADLNVL---DKEKRSPLLLAASRGGWKT------NGVNT 277
PLHCAA + V ++L++ GA + + D + + G +
Sbjct: 106 PLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKM 165
Query: 278 RILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYD 330
I+N L N + ++ D + I+ + A + D
Sbjct: 166 GIMNKGVIYALWDYEPQND---DELPMKEGDCMTIIHREDEDEIEWWWARLND 215
Score = 97.7 bits (244), Expect = 4e-23
Identities = 28/219 (12%), Positives = 64/219 (29%), Gaps = 43/219 (19%)
Query: 150 DAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQ 209
+ G + L K + G ++ L + + +G D+V+
Sbjct: 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNPLPL-ALLLDSSLEGEFDLVQR----- 55
Query: 210 PSEKLVC----LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAA 265
++ + + + +T LH A ++V++L+ G ++N D + +P
Sbjct: 56 ----IIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTP----- 106
Query: 266 SRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYK-DMIDILQGGEHGRTALH 324
LH A N V + L++ + +
Sbjct: 107 ----------------------LHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKC 144
Query: 325 IAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKN 363
+ +C++ L + Y + D
Sbjct: 145 EEMEEGYTQCSQFLYGV-QEKMGIMNKGVIYALWDYEPQ 182
Score = 76.5 bits (189), Expect = 8e-16
Identities = 25/129 (19%), Positives = 43/129 (33%), Gaps = 16/129 (12%)
Query: 495 DKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVA 554
+ + L KT + + + +L L G ++
Sbjct: 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNP-LPLALLLDSSLE--GEF-----DLV 53
Query: 555 AVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLT 614
+ +I +L N+ + LH A G VK L+ G +N +D +G T
Sbjct: 54 -----QRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQ--FGV-NVNAADSDGWT 105
Query: 615 PLHIASKEG 623
PLH A+
Sbjct: 106 PLHCAASCN 114
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Length = 156
Score = 108 bits (272), Expect = 1e-27
Identities = 35/158 (22%), Positives = 66/158 (41%), Gaps = 18/158 (11%)
Query: 467 TPLHCAAMFDRCDVVQYLID-EGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANIL 525
L AA V+ L+ E + L++ ++ L + G L L++ A+
Sbjct: 4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPN 62
Query: 526 LKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAAR 585
++D + + +H G + + + L+ GA +N+ + + P+HLA +
Sbjct: 63 VQDTSGTSPVHDAARTG--FL-----DTL-----KVLVEHGADVNVPDGTGALPIHLAVQ 110
Query: 586 YGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
G V L + S ++ D GLTPL +A + G
Sbjct: 111 EGHTAVVSFLAA---ESD-LHRRDARGLTPLELALQRG 144
Score = 102 bits (257), Expect = 1e-25
Identities = 39/169 (23%), Positives = 66/169 (39%), Gaps = 18/169 (10%)
Query: 429 TPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEG 488
+ A ++G + VR + +LV ++ + T L F + L+ +G
Sbjct: 4 DRLSGAAARGDVQEVRRLL----HRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQG 58
Query: 489 ADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKE 548
A NV D SP+ AA G T+ LV + A++ + D +HL V G H
Sbjct: 59 ASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEG--HT-- 114
Query: 549 FAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLS 597
V L + ++ ++ +PL LA + G + V L
Sbjct: 115 ---AVV-----SFLAA-ESDLHRRDARGLTPLELALQRGAQDLVDILQG 154
Score = 87.9 bits (219), Expect = 2e-20
Identities = 39/193 (20%), Positives = 57/193 (29%), Gaps = 45/193 (23%)
Query: 153 GNLPLHSAVHGGDFKAV-ELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPS 211
L A GD + V L + T + + G+ I
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALE------- 53
Query: 212 EKLVC----LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASR 267
L+ N D +P+H AA D ++ L++ GAD+NV D P+ LA
Sbjct: 54 --LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQE 111
Query: 268 GGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAA 327
G H A V L D+ + G T L +A
Sbjct: 112 G--------------------HTAV----VSFLA------AESDLHRRDARGLTPLELAL 141
Query: 328 IYDFDECARILVK 340
+ IL
Sbjct: 142 QRGAQDLVDILQG 154
Score = 80.5 bits (200), Expect = 4e-18
Identities = 38/195 (19%), Positives = 54/195 (27%), Gaps = 56/195 (28%)
Query: 319 GRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGES 378
L AA + R L+ G +
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQ-------------------- 41
Query: 379 IGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQG 438
G+ LK GA + Q ++PVH A G
Sbjct: 42 -----------VMMFGST-----------AIALELLKQGASPNVQDTSGTSPVHDAARTG 79
Query: 439 ALDIVRLMFNLQPSEKLV----CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVL 494
LD +++ LV +N D P+H A VV +L +DL+
Sbjct: 80 FLDTLKV---------LVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRR 129
Query: 495 DKEKRSPLLLAASRG 509
D +PL LA RG
Sbjct: 130 DARGLTPLELALQRG 144
Score = 77.5 bits (192), Expect = 5e-17
Identities = 38/221 (17%), Positives = 62/221 (28%), Gaps = 74/221 (33%)
Query: 226 TPLHCAAMFDRCDVVQYLID-EGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKK 284
L AA V+ L+ E + L++ ++ L +
Sbjct: 4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM---------------FGST 48
Query: 285 QAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGA 344
L LL+ G + +H AA F + ++LV+
Sbjct: 49 AIAL-------------ELLKQG--ASPNVQDTSGTSPVHDAARTGFLDTLKVLVE---- 89
Query: 345 SLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHG 404
H A N G LP+H AV
Sbjct: 90 -------------HGADVNVPDG-------------------------TGALPIHLAVQE 111
Query: 405 GDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRL 445
G V L + + + + TP+ LA +GA D+V +
Sbjct: 112 GHTAVVSF-LAAESDLHRRDARGLTPLELALQRGAQDLVDI 151
Score = 75.9 bits (188), Expect = 2e-16
Identities = 38/183 (20%), Positives = 58/183 (31%), Gaps = 34/183 (18%)
Query: 67 GRTALHIAAIY-DFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASS 125
L AA D E R+L E G + S+
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRE------------LVHPDALNRFGKTALQVMMFG-ST 48
Query: 126 KTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFD 185
L+ G S D G P+H A G +++ ++ GA ++
Sbjct: 49 AIALELLKQGASPNVQ--------DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGT 100
Query: 186 LSTPVHLACSQGALDIVRLMFNLQPSEKLVC---LNSTDAQKMTPLHCAAMFDRCDVVQY 242
+ P+HLA +G +V L L+ DA+ +TPL A D+V
Sbjct: 101 GALPIHLAVQEGHTAVVSF---------LAAESDLHRRDARGLTPLELALQRGAQDLVDI 151
Query: 243 LID 245
L
Sbjct: 152 LQG 154
Score = 59.0 bits (144), Expect = 2e-10
Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 13/82 (15%)
Query: 544 GHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSF 603
G ++E L L + N ++ L + +G +LL +G+
Sbjct: 13 GDVQEVRR------L---LHRELVHPDALNRFGKTALQVMM-FGSTAIALELLK--QGA- 59
Query: 604 IINESDGEGLTPLHIASKEGFH 625
N D G +P+H A++ GF
Sbjct: 60 SPNVQDTSGTSPVHDAARTGFL 81
Score = 54.7 bits (133), Expect = 4e-09
Identities = 36/186 (19%), Positives = 54/186 (29%), Gaps = 57/186 (30%)
Query: 19 SSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYD 78
V+ LN + L + I L LL+ G + +H AA
Sbjct: 23 HRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQG--ASPNVQDTSGTSPVHDAARTG 79
Query: 79 FDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESI 138
F + ++LV H A N
Sbjct: 80 FLDTLKVLVE----------------------------HGADVNVP-------------- 97
Query: 139 GCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGA 198
D G LP+H AV G V L + + + + TP+ LA +GA
Sbjct: 98 -----------DGTGALPIHLAVQEGHTAVVSF-LAAESDLHRRDARGLTPLELALQRGA 145
Query: 199 LDIVRL 204
D+V +
Sbjct: 146 QDLVDI 151
Score = 36.2 bits (85), Expect = 0.011
Identities = 12/69 (17%), Positives = 23/69 (33%), Gaps = 3/69 (4%)
Query: 20 SSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDF 79
G + + + +HLA + ++ L D+ + G T L +A
Sbjct: 89 EHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE---SDLHRRDARGLTPLELALQRGA 145
Query: 80 DECARILVS 88
+ IL
Sbjct: 146 QDLVDILQG 154
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate
recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo
sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A
3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 108 bits (272), Expect = 1e-27
Identities = 41/161 (25%), Positives = 67/161 (41%), Gaps = 16/161 (9%)
Query: 462 DAQKMTPLHCAAMFDRCDVVQYLIDE-GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRN 520
+++ L AA + V+ L + ++ + +PL AA V L+++
Sbjct: 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 64
Query: 521 KANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPL 580
A++ KD LH G H EVA E L+ GA +N+ + +PL
Sbjct: 65 GADVHAKDKGGLVPLHNACSYG--HY-----EVA-----ELLVKHGAVVNVADLWKFTPL 112
Query: 581 HLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASK 621
H AA G+Y K LL G+ + + +G TPL +
Sbjct: 113 HEAAAKGKYEICKLLLQ--HGA-DPTKKNRDGNTPLDLVKD 150
Score = 90.9 bits (227), Expect = 1e-21
Identities = 45/175 (25%), Positives = 74/175 (42%), Gaps = 17/175 (9%)
Query: 176 GAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFD 235
GA ++ + + A G ++ V+ + +Q + ++ TPLH AA ++
Sbjct: 1 GAMGNS---EADRQLLEAAKAGDVETVKKLCTVQSVNC----RDIEGRQSTPLHFAAGYN 53
Query: 236 RCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKT------NGVNTRILNNKKQAVLH 289
R VV+YL+ GAD++ DK PL A S G ++ +G + + K LH
Sbjct: 54 RVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLH 113
Query: 290 LATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGA 344
A K I +LLQ+ D + G T L + D + +L D A
Sbjct: 114 EAAAKGKYEICKLLLQHG--ADPTKKNRDGNTPLDLVKDGDT-DIQDLLRGD-AA 164
Score = 85.9 bits (214), Expect = 9e-20
Identities = 40/190 (21%), Positives = 62/190 (32%), Gaps = 46/190 (24%)
Query: 317 EHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFG 376
L AA E + L + + P+H AA +E LQ G
Sbjct: 6 SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG 65
Query: 377 ESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACS 436
+ + G +PLH+A G ++ EL +K GA +
Sbjct: 66 ADVHAKDK--------GGLVPLHNACSYGHYEVAELLVKHGAVV---------------- 101
Query: 437 QGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDK 496
N D K TPLH AA + ++ + L+ GAD ++
Sbjct: 102 ----------------------NVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNR 139
Query: 497 EKRSPLLLAA 506
+ +PL L
Sbjct: 140 DGNTPLDLVK 149
Score = 71.7 bits (177), Expect = 8e-15
Identities = 38/176 (21%), Positives = 63/176 (35%), Gaps = 22/176 (12%)
Query: 29 NNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVS 88
N++ L A + V + L + ++ T LH AA Y+ L+
Sbjct: 5 NSEADRQLLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 63
Query: 89 EQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISL 148
GA + G P+H+A + E+ ++ G +
Sbjct: 64 H------------GADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVV----NVA--- 104
Query: 149 FDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRL 204
D PLH A G ++ +L L+ GA + + D +TP+ L G DI L
Sbjct: 105 -DLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLV-KDGDTDIQDL 158
Score = 61.3 bits (150), Expect = 3e-11
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 560 ENLINLGAC-INLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHI 618
+ L + + +PLH AA Y R + V+ LL G+ ++ D GL PLH
Sbjct: 25 KKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ--HGA-DVHAKDKGGLVPLHN 81
Query: 619 ASKEG 623
A G
Sbjct: 82 ACSYG 86
Score = 58.9 bits (144), Expect = 2e-10
Identities = 40/162 (24%), Positives = 61/162 (37%), Gaps = 24/162 (14%)
Query: 16 LIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAA 75
L + VN R + ++ LH A N+V ++ LLQ+ D+ + G LH A
Sbjct: 27 LC-TVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG--ADVHAKDKGGLVPLHNAC 83
Query: 76 IYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFG 135
Y E A +LV GA + A + P+H+AA + ++ LQ G
Sbjct: 84 SYGHYEVAELLVKH------------GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHG 131
Query: 136 ESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGA 177
+ +GN PL GD +L A
Sbjct: 132 ADPTKK--------NRDGNTPLDLVKD-GDTDIQDLLRGDAA 164
Score = 58.2 bits (142), Expect = 4e-10
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 572 KNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
N+ + L AA+ G TVKKL + S + +G TPLH A+
Sbjct: 4 GNSEADRQLLEAAKAGDVETVKKLCTV--QSVNCRDIEGRQSTPLHFAAGYN 53
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 109 bits (274), Expect = 4e-27
Identities = 45/240 (18%), Positives = 75/240 (31%), Gaps = 37/240 (15%)
Query: 397 PLHSAVHGGDFKAVELCLKS--------GAKISTQQFDLSTPVHLA---CSQGALDIVRL 445
L S V G + + L+ T+ T + A G +
Sbjct: 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMP 64
Query: 446 MFNLQPSEKLVCL------NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEK- 498
+ + Q + LH A V+ L++ GAD+++ +
Sbjct: 65 LLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRF 124
Query: 499 ------------RSPLLLAASRGGWKTVLTLVRN---KANILLKDINRRNILHLLVLNGG 543
PL LAA W V L+ N A++ D +LH LV+
Sbjct: 125 FQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIAD 184
Query: 544 GHIKEFAEEVAAVFL----GENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSE 599
+ A + G L + N+ +PL LAA+ G+ + +L E
Sbjct: 185 NSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQRE 244
Score = 96.8 bits (241), Expect = 1e-22
Identities = 38/250 (15%), Positives = 72/250 (28%), Gaps = 40/250 (16%)
Query: 36 LHLATELNKVPILLILLQY------KDMIDILQGGEHGRTALHIAAIYDFD---ECARIL 86
L L LL+Y G G+T L A + D C L
Sbjct: 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPL 65
Query: 87 VSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESI-----GCS 141
+ + A G+ +H A + S + +++ ++ G + G
Sbjct: 66 LQIDKDSG-NPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRF 124
Query: 142 REEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSG---AKISTQQFDLSTPVHLACSQGA 198
++ G LPL A + V L++ A + +T +H
Sbjct: 125 FQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALV---- 180
Query: 199 LDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKR 258
+ + ++ + + L + L + + +
Sbjct: 181 ------------------MIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGL 222
Query: 259 SPLLLAASRG 268
+PL LAA G
Sbjct: 223 TPLKLAAKEG 232
Score = 94.9 bits (236), Expect = 5e-22
Identities = 38/264 (14%), Positives = 77/264 (29%), Gaps = 49/264 (18%)
Query: 288 LHLATELNKVPILLILLQY------KDMIDILQGGEHGRTALHIAAIYDFD---ECARIL 338
L L LL+Y G G+T L A + D C L
Sbjct: 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPL 65
Query: 339 V----------KDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESI-----GCSR 383
+ A G+ +H A + S + +++ ++ G + G
Sbjct: 66 LQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFF 125
Query: 384 EEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSG---AKISTQQFDLSTPVHLACSQGAL 440
++ G LPL A + V L++ A + +T +H
Sbjct: 126 QKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALV----- 180
Query: 441 DIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRS 500
+ + ++ + + L + L + + + +
Sbjct: 181 -----------------MIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLT 223
Query: 501 PLLLAASRGGWKTVLTLVRNKANI 524
PL LAA G + +++ + +
Sbjct: 224 PLKLAAKEGKIEIFRHILQREFSG 247
Score = 88.3 bits (219), Expect = 1e-19
Identities = 40/310 (12%), Positives = 72/310 (23%), Gaps = 93/310 (30%)
Query: 156 PLHSAVHGGDFKAVELCLKS--------GAKISTQQFDLSTPVHLA---CSQGALDIVRL 204
L S V G + + L+ T+ T + A G +
Sbjct: 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMP 64
Query: 205 MFNLQPSEKLVCL------NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKR 258
+ + Q + LH A V+ L++ GAD+++ +
Sbjct: 65 LLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRF 124
Query: 259 SPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEH 318
Sbjct: 125 FQKHQGT-------------------------------------------------CFYF 135
Query: 319 GRTALHIAAIYDFDECARILVK--DFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFG 376
G L +AA + L++ ASL+ S G +H A +
Sbjct: 136 GELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNS--------- 186
Query: 377 ESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACS 436
N L ++ G + + TP+ LA
Sbjct: 187 ----------------PENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAK 230
Query: 437 QGALDIVRLM 446
+G ++I R +
Sbjct: 231 EGKIEIFRHI 240
Score = 64.4 bits (157), Expect = 1e-11
Identities = 32/214 (14%), Positives = 60/214 (28%), Gaps = 49/214 (22%)
Query: 3 LLSVQSDNKNKSRLIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQY-------- 54
LL + D+ N L+ + + LH+A E + + +L++
Sbjct: 65 LLQIDKDSGNPKPLV----NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRA 120
Query: 55 ---KDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSN 111
G L +AA + L+ + ASL+ S
Sbjct: 121 CGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQ---------PASLEATDSL 171
Query: 112 GYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVEL 171
G +H A ++ N L ++ G +
Sbjct: 172 GNTVLHALVMIAD-------------------------NSPENSALVIHMYDGLLQMGAR 206
Query: 172 CLKSGAKISTQQFDLSTPVHLACSQGALDIVRLM 205
+ TP+ LA +G ++I R +
Sbjct: 207 LCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHI 240
Score = 37.5 bits (87), Expect = 0.008
Identities = 18/120 (15%), Positives = 30/120 (25%), Gaps = 29/120 (24%)
Query: 36 LHLATELNKVPILLILLQYKDMI-DILQGGEHGRTALHIAAIYDFD-------------- 80
L LA + ++ LL+ + G T LH + +
Sbjct: 140 LSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDG 199
Query: 81 --ECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESI 138
+ L + + G P+ AAK + LQ S
Sbjct: 200 LLQMGARLCPT------------VQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSG 247
Score = 33.2 bits (76), Expect = 0.18
Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Query: 29 NNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVS 88
N+ + + L + + + L + +I G T L +AA E R ++
Sbjct: 185 NSPENSALVIHMYDGLLQMGARLCPTVQLEEI--SNHQGLTPLKLAAKEGKIEIFRHILQ 242
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 107 bits (268), Expect = 6e-27
Identities = 26/175 (14%), Positives = 49/175 (28%), Gaps = 13/175 (7%)
Query: 429 TPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEG 488
V A G + +F +K L R + +LI++G
Sbjct: 8 RTVSAAAMLGTYEDFLELFEKGYEDKES--VLKSNILYDVLRNNNDEARYKISMFLINKG 65
Query: 489 ADLNVLDKEKRSPLLLAASRGGWKTVLT------LVRNKANILLKDINRRNILHLLVLNG 542
AD+ KE + GG T + A+I + ++ + N
Sbjct: 66 ADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNY 125
Query: 543 GGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLS 597
E + G + +K+ + L R + +K +
Sbjct: 126 FVDENEMIPLYKLI-----FSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMED 175
Score = 101 bits (253), Expect = 7e-25
Identities = 28/176 (15%), Positives = 56/176 (31%), Gaps = 19/176 (10%)
Query: 465 KMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAA-----SRGGWKTVLTLVR 519
+ + AAM + L ++G + + +S +L +K + L+
Sbjct: 6 EYRTVSAAAMLGTYEDFLELFEKGYEDK--ESVLKSNILYDVLRNNNDEARYKISMFLIN 63
Query: 520 NKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESP 579
A+I + + L GG I E + + GA I +
Sbjct: 64 KGADIKSRTKEGTTLFFPLFQGGGNDITGTTELC------KIFLEKGADITALYKPYKIV 117
Query: 580 LHLAARYGRYNTVK-----KLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSI 630
+ + + KL+ S+ G + D GLT L + ++ +
Sbjct: 118 VFKNIFNYFVDENEMIPLYKLIFSQSGL-QLLIKDKWGLTALEFVKRCQKPIALKM 172
Score = 87.0 bits (216), Expect = 5e-20
Identities = 23/190 (12%), Positives = 50/190 (26%), Gaps = 19/190 (10%)
Query: 352 NGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVE 411
+ Y + AA + + + G S + L+ L + +K
Sbjct: 5 SEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDV-----LRNNNDEARYKISM 59
Query: 412 LCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC----LNSTDAQKMT 467
+ GA I ++ + +T G DI + + + + +
Sbjct: 60 FLINKGADIKSRTKEGTTLFFPLFQGGGNDITG---TTELCKIFLEKGADITALYKPYKI 116
Query: 468 PLHCAAMFDRCDVVQ-------YLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRN 520
+ D + G L + DK + L + +
Sbjct: 117 VVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDY 176
Query: 521 KANILLKDIN 530
LK+ +
Sbjct: 177 IKKYNLKENS 186
Score = 87.0 bits (216), Expect = 5e-20
Identities = 28/174 (16%), Positives = 49/174 (28%), Gaps = 20/174 (11%)
Query: 188 TPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEG 247
V A G + +F +K L R + +LI++G
Sbjct: 8 RTVSAAAMLGTYEDFLELFEKGYEDKES--VLKSNILYDVLRNNNDEARYKISMFLINKG 65
Query: 248 ADLNVLDKEKRSPLLLAASRGGWKT------------NGVNTRILNNKKQAVLHLATELN 295
AD+ KE + GG G + L + V+
Sbjct: 66 ADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNY 125
Query: 296 KVPILLILLQYKDMI-----DILQGGEHGRTALHIAAIYDFDECARILVKDFGA 344
V ++ YK + +L + G TAL +++ D+
Sbjct: 126 FVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMME-DYIK 178
Score = 77.0 bits (190), Expect = 2e-16
Identities = 28/189 (14%), Positives = 54/189 (28%), Gaps = 20/189 (10%)
Query: 319 GRTALHIAAIYDFDECARILVKDFGASLKR---ACSNGYYPIHDAAKNASSKTMEVFLQF 375
+ AA+ E L + G K + Y + + A K +
Sbjct: 6 EYRTVSAAAMLGTYEDFLELFEK-GYEDKESVLKSNILYDVLRNNNDEARYKISMFLINK 64
Query: 376 GESIGCSREEMISLFAAEGNLPLHSAVHGG------DFKAVELCLKSGAKISTQQFDLST 429
G I +E G GG + ++ L+ GA I+
Sbjct: 65 GADIKSRTKE--------GTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKI 116
Query: 430 PVHLACSQGALDIVRLMFNLQP--SEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDE 487
V +D ++ + S+ + L D +T L + ++ + D
Sbjct: 117 VVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDY 176
Query: 488 GADLNVLDK 496
N+ +
Sbjct: 177 IKKYNLKEN 185
Score = 76.3 bits (188), Expect = 3e-16
Identities = 28/200 (14%), Positives = 53/200 (26%), Gaps = 31/200 (15%)
Query: 67 GRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKR---ACSNGYYPIHDAAKNA 123
+ AA+ E L + G K + Y + + A
Sbjct: 6 EYRTVSAAAMLGTYEDFLELFEK------------GYEDKESVLKSNILYDVLRNNNDEA 53
Query: 124 SSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGG------DFKAVELCLKSGA 177
K + G I EG GG + ++ L+ GA
Sbjct: 54 RYKISMFLINKGADIKSR--------TKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGA 105
Query: 178 KISTQQFDLSTPVHLACSQGALDIVRLMFNLQP--SEKLVCLNSTDAQKMTPLHCAAMFD 235
I+ V +D ++ + S+ + L D +T L
Sbjct: 106 DITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQ 165
Query: 236 RCDVVQYLIDEGADLNVLDK 255
+ ++ + D N+ +
Sbjct: 166 KPIALKMMEDYIKKYNLKEN 185
Score = 72.8 bits (179), Expect = 4e-15
Identities = 18/133 (13%), Positives = 36/133 (27%), Gaps = 16/133 (12%)
Query: 496 KEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAA 555
+ + AA G ++ L L K+ ++ + VL E +++
Sbjct: 4 MSEYRTVSAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNN--DEARYKIS- 58
Query: 556 VFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFI-----INESDG 610
LIN GA I + + + G + + F+ I
Sbjct: 59 ----MFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKI--FLEKGADITALYK 112
Query: 611 EGLTPLHIASKEG 623
+
Sbjct: 113 PYKIVVFKNIFNY 125
Score = 39.3 bits (92), Expect = 0.001
Identities = 11/74 (14%), Positives = 22/74 (29%), Gaps = 5/74 (6%)
Query: 20 SSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMI-----DILQGGEHGRTALHIA 74
G + L + V+ V ++ YK + +L + G TAL
Sbjct: 102 EKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFV 161
Query: 75 AIYDFDECARILVS 88
+++
Sbjct: 162 KRCQKPIALKMMED 175
Score = 38.1 bits (89), Expect = 0.003
Identities = 11/93 (11%), Positives = 20/93 (21%), Gaps = 33/93 (35%)
Query: 575 SNESPLHLAARYGRYNTVKKLLS----------------------SERGSFII------- 605
S + AA G Y +L ++ + I
Sbjct: 5 SEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINK 64
Query: 606 ----NESDGEGLTPLHIASKEGFHYSVSIFQVT 634
EG T + G + ++
Sbjct: 65 GADIKSRTKEGTTLFFPLFQGGGNDITGTTELC 97
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 104 bits (263), Expect = 1e-26
Identities = 31/166 (18%), Positives = 56/166 (33%), Gaps = 22/166 (13%)
Query: 459 NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLV 518
S+ L AA R + V+ L++ GA+ N + R P+ + G + L+
Sbjct: 6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLL 64
Query: 519 RNKANILLKDINRRNI-LHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNE 577
+ A D +H G + + V L GA +++++
Sbjct: 65 LHGAEPNCADPATLTRPVHDAARE--GFL-----DTLVV-----LHRAGARLDVRDAWGR 112
Query: 578 SPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
P+ LA G + + L + G I + EG
Sbjct: 113 LPVDLAEELGHRDVARYLRA--------AAGGTRGSNHARIDAAEG 150
Score = 94.5 bits (236), Expect = 6e-23
Identities = 35/180 (19%), Positives = 62/180 (34%), Gaps = 26/180 (14%)
Query: 414 LKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAA 473
++ A S + + + A ++G ++ VR + E N+ ++ P+
Sbjct: 1 MEPAAGSSME--PSADWLATAAARGRVEEVRALL-----EAGANPNAPNSYGRRPIQVMM 53
Query: 474 MFDRCDVVQYLIDEGADLNVLDKEKR-SPLLLAASRGGWKTVLTLVRNKANILLKDINRR 532
M V + L+ GA+ N D P+ AA G T++ L R A + ++D R
Sbjct: 54 M-GSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGR 112
Query: 533 NILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTV 592
+ L G H +VA L N + A G +
Sbjct: 113 LPVDLAEELG--H-----RDVA-----RYLRAAAGGTRGSN-----HARIDAAEGPSDIP 155
Score = 90.2 bits (225), Expect = 2e-21
Identities = 33/155 (21%), Positives = 49/155 (31%), Gaps = 20/155 (12%)
Query: 393 EGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPS 452
L +A G + V L++GA + P+ + G+ + L
Sbjct: 11 PSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVM-MMGSARVAEL------- 62
Query: 453 EKLVC----LNSTDAQKMT-PLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAAS 507
L+ N D +T P+H AA D + L GA L+V D R P+ LA
Sbjct: 63 --LLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEE 120
Query: 508 RGGWKTVLTLVRNKANILLKDINRRNILHLLVLNG 542
G L N + G
Sbjct: 121 LGHRDVARYLRAAAG-----GTRGSNHARIDAAEG 150
Score = 82.5 bits (205), Expect = 1e-18
Identities = 30/124 (24%), Positives = 45/124 (36%), Gaps = 15/124 (12%)
Query: 150 DAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQ 209
L +A G + V L++GA + P+ + G+ + L
Sbjct: 9 MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVM-MMGSARVAEL----- 62
Query: 210 PSEKLVC----LNSTDAQKMT-PLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLA 264
L+ N D +T P+H AA D + L GA L+V D R P+ LA
Sbjct: 63 ----LLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLA 118
Query: 265 ASRG 268
G
Sbjct: 119 EELG 122
Score = 81.0 bits (201), Expect = 3e-18
Identities = 35/145 (24%), Positives = 60/145 (41%), Gaps = 20/145 (13%)
Query: 485 IDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGG 544
++ A + + L AA+RG + V L+ AN + R + ++++ G
Sbjct: 1 MEPAAGSS--MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM---G 55
Query: 545 HIKEFAEEVAAVFLGENLINLGACINLKNNSNE-SPLHLAARYGRYNTVKKLLSSERGSF 603
VA E L+ GA N + + P+H AAR G +T+ L G+
Sbjct: 56 SA-----RVA-----ELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHR--AGA- 102
Query: 604 IINESDGEGLTPLHIASKEGFHYSV 628
++ D G P+ +A + G H V
Sbjct: 103 RLDVRDAWGRLPVDLAEELG-HRDV 126
Score = 80.2 bits (199), Expect = 7e-18
Identities = 38/205 (18%), Positives = 54/205 (26%), Gaps = 65/205 (31%)
Query: 65 EHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNAS 124
E L AA E R L+ GA+ S G PI
Sbjct: 10 EPSADWLATAAARGRVEEVRALLEA------------GANPNAPNSYGRRPIQVMMMG-- 55
Query: 125 SKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQ-Q 183
+ V EL L GA+ +
Sbjct: 56 ---------------------------------SARV-------AELLLLHGAEPNCADP 75
Query: 184 FDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYL 243
L+ PVH A +G LD + ++ L+ DA P+ A DV +YL
Sbjct: 76 ATLTRPVHDAAREGFLDTLVVLH-----RAGARLDVRDAWGRLPVDLAEELGHRDVARYL 130
Query: 244 IDEGADLNVLDKEKRSPLLLAASRG 268
+ + A+ G
Sbjct: 131 RAAAGGTR-----GSNHARIDAAEG 150
Score = 79.8 bits (198), Expect = 9e-18
Identities = 26/153 (16%), Positives = 48/153 (31%), Gaps = 16/153 (10%)
Query: 218 NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKT----- 272
S+ L AA R + V+ L++ GA+ N + R P+ + G +
Sbjct: 6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLL 64
Query: 273 -NGVNTRILNNKKQAV-LHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYD 330
+G + +H A + L++L + + GR + +A
Sbjct: 65 LHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAG--ARLDVRDAWGRLPVDLAEELG 122
Query: 331 FDECARILVKDFGASLKRACSNGYYPIHDAAKN 363
+ AR L + G A
Sbjct: 123 HRDVARYLRA------AAGGTRGSNHARIDAAE 149
Score = 62.5 bits (153), Expect = 1e-11
Identities = 33/201 (16%), Positives = 57/201 (28%), Gaps = 47/201 (23%)
Query: 244 IDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLIL 303
++ A + + L AA+RG + + L
Sbjct: 1 MEPAAGSS--MEPSADWLATAAARG--------------------RVE-------EVRAL 31
Query: 304 LQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGY-YPIHDAAK 362
L+ + +GR + + A +L+ GA A P+HDAA+
Sbjct: 32 LEAG--ANPNAPNSYGRRPIQVMM-MGSARVAELLL-LHGAEPNCADPATLTRPVHDAAR 87
Query: 363 NASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKIST 422
T+ V + G + A G LP+ A G +
Sbjct: 88 EGFLDTLVVLHRAGARLDVR--------DAWGRLPVDLAEELGHRDVARYLRAAAGGT-- 137
Query: 423 QQFDLSTPVHLACSQGALDIV 443
S + ++G DI
Sbjct: 138 ---RGSNHARIDAAEGPSDIP 155
Score = 35.5 bits (83), Expect = 0.015
Identities = 12/87 (13%), Positives = 23/87 (26%), Gaps = 19/87 (21%)
Query: 36 LHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDW 95
+H A + L++L + + GR + +A + AR L +
Sbjct: 82 VHDAAREGFLDTLVVLHRAG--ARLDVRDAWGRLPVDLAEELGHRDVARYLRA------- 132
Query: 96 IMVKDFGASLKRACSNGYYPIHDAAKN 122
+ G A
Sbjct: 133 ----------AAGGTRGSNHARIDAAE 149
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 109 bits (273), Expect = 3e-26
Identities = 44/271 (16%), Positives = 91/271 (33%), Gaps = 13/271 (4%)
Query: 358 HDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSG 417
HD + S +++ + E+ + L A L + +
Sbjct: 32 HDLTSDFLSSPLKIMKALPSPVVNDNEQKMKLEAF-----LQRLLFPEIQEMPTSLNNDS 86
Query: 418 AKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDR 477
+ +++ + L V + P+ +L D TPLH
Sbjct: 87 SNRNSEGGSSNQQQQHVSFDSLLQEVN---DAFPNTQLNLNIPVDEHGNTPLHWLTSIAN 143
Query: 478 CDVVQYLIDEGADLNVLDKEKRSPLLLAASRG---GWKTVLTLVR-NKANILLKDINRRN 533
++V++L+ G++ D S L+ A T L+ ++L+D R
Sbjct: 144 LELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRT 203
Query: 534 ILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVK 593
ILH +++ G A + L ++ + + R +++
Sbjct: 204 ILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSIL 263
Query: 594 KLLSS-ERGSFIINESDGEGLTPLHIASKEG 623
+ L + ++N D G T L+IA++ G
Sbjct: 264 ENLDLKWIIANMLNAQDSNGDTCLNIAARLG 294
Score = 103 bits (259), Expect = 2e-24
Identities = 41/273 (15%), Positives = 83/273 (30%), Gaps = 30/273 (10%)
Query: 5 SVQSDNKNKSRLIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGG 64
+ + + + + S + Q H++ + + + ++I
Sbjct: 70 LLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNI-PVD 128
Query: 65 EHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNAS 124
EHG T LH E + LV G++ + G + A K+ +
Sbjct: 129 EHGNTPLHWLTSIANLELVKHLVK------------HGSNRLYGDNMGESCLVKAVKSVN 176
Query: 125 SKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKA------------VELC 172
+ F + + + L D+ LH + +
Sbjct: 177 NYDSGTFEALLDYLYPC----LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWI 232
Query: 173 LKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAA 232
+K + + + D + +L+ LN+ D+ T L+ AA
Sbjct: 233 VKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIAN-MLNAQDSNGDTCLNIAA 291
Query: 233 MFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAA 265
+V L+D GAD + +K P+ A
Sbjct: 292 RLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324
Score = 103 bits (257), Expect = 3e-24
Identities = 33/230 (14%), Positives = 75/230 (32%), Gaps = 17/230 (7%)
Query: 399 HSAVHGGDFKAVELCLKSGAKISTQQ-FDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC 457
H + + + + ++ +TP+H S L++V+ + +
Sbjct: 102 HVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN----- 156
Query: 458 LNSTDAQKMTPLHCAAMFDRC----DVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKT 513
D + L A L L + D R+ L G
Sbjct: 157 RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTG 216
Query: 514 VLTLVRNKANILLKDINRRNILHLLVLNGGG----HIKEFAEEVAAVFLGENLINLGACI 569
+ +IL+ I ++ + + K + + + + + +
Sbjct: 217 CSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANML 276
Query: 570 NLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIA 619
N ++++ ++ L++AAR G + V LL G+ ++ GL P+
Sbjct: 277 NAQDSNGDTCLNIAARLGNISIVDALLD--YGAD-PFIANKSGLRPVDFG 323
Score = 99.3 bits (247), Expect = 6e-23
Identities = 39/246 (15%), Positives = 74/246 (30%), Gaps = 33/246 (13%)
Query: 280 LNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILV 339
+ Q H++ + + + ++I EHG T LH E + LV
Sbjct: 93 GGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNI-PVDEHGNTPLHWLTSIANLELVKHLV 151
Query: 340 KDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAA------- 392
G++ + G + A K+ ++ F E ++
Sbjct: 152 -KHGSNRLYGDNMGESCLVKAVKSVNNYDSGTF-----------EALLDYLYPCLILEDS 199
Query: 393 EGNLPLHSAVHGGDFKA------------VELCLKSGAKISTQQFDLSTPVHLACSQGAL 440
LH + + +K + + +
Sbjct: 200 MNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERK 259
Query: 441 DIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRS 500
D + +L+ LN+ D+ T L+ AA +V L+D GAD + +K
Sbjct: 260 DSILENLDLKWIIAN-MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLR 318
Query: 501 PLLLAA 506
P+ A
Sbjct: 319 PVDFGA 324
Score = 97.8 bits (243), Expect = 2e-22
Identities = 49/330 (14%), Positives = 92/330 (27%), Gaps = 50/330 (15%)
Query: 117 HDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSG 176
HD + S +++ + E+ + + L + +
Sbjct: 32 HDLTSDFLSSPLKIMKALPSPVVNDNEQKM-----KLEAFLQRLLFPEIQEMPTSLNNDS 86
Query: 177 AKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDR 236
+ +++ + L V + P+ +L D TPLH
Sbjct: 87 SNRNSEGGSSNQQQQHVSFDSLLQEVN---DAFPNTQLNLNIPVDEHGNTPLHWLTSIAN 143
Query: 237 CDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNK 296
++V++L+ G++ D S L+ A NN +
Sbjct: 144 LELVKHLVKHGSNRLYGDNMGESCLVKAVKSV------------NNY---------DSGT 182
Query: 297 VPILLILLQYKDMIDILQGGEHGRTALHIAAI------------YDFDECARILVKDFGA 344
LL L ++ RT LH I Y D +VK
Sbjct: 183 FEALLDYLY----PCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKK-QN 237
Query: 345 SLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHG 404
++ +N + ++ L I M++ + G+ L+ A
Sbjct: 238 RPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIA----NMLNAQDSNGDTCLNIAARL 293
Query: 405 GDFKAVELCLKSGAKISTQQFDLSTPVHLA 434
G+ V+ L GA PV
Sbjct: 294 GNISIVDALLDYGADPFIANKSGLRPVDFG 323
Score = 87.4 bits (216), Expect = 7e-19
Identities = 38/283 (13%), Positives = 76/283 (26%), Gaps = 36/283 (12%)
Query: 318 HGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGE 377
L + E L D S+ H + + + + F
Sbjct: 62 KLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQL 121
Query: 378 SIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQ 437
++ +E GN PLH + + V+ +K G+ + + A
Sbjct: 122 NLNIPVDE-------HGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKS 174
Query: 438 GALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCD------------VVQYLI 485
L CL D+ T LH + ++ +++
Sbjct: 175 VNNYDSGTFEALL-DYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIV 233
Query: 486 DEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILL----KDINRRNILHLLVLN 541
+ ++ + ++L + K I +D N L++
Sbjct: 234 KKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARL 293
Query: 542 GGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAA 584
G + L++ GA + N S P+ A
Sbjct: 294 GN---ISIVDA---------LLDYGADPFIANKSGLRPVDFGA 324
Score = 72.4 bits (177), Expect = 6e-14
Identities = 24/231 (10%), Positives = 68/231 (29%), Gaps = 30/231 (12%)
Query: 16 LIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAA 75
+ +N + + LH T + + ++ L+++ + L G G + L A
Sbjct: 116 FPNTQLNLNIPV-DEHGNTPLHWLTSIANLELVKHLVKHG--SNRLYGDNMGESCLVKAV 172
Query: 76 IYD---FDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKT----- 127
L+ C ++++D S +H +
Sbjct: 173 KSVNNYDSGTFEALLDYLYPC--LILED---------SMNRTILHHIIITSGMTGCSAAA 221
Query: 128 ---MEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQF 184
+++ + + + + + + ++L ++ Q
Sbjct: 222 KYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDS 281
Query: 185 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFD 235
+ T +++A G + IV + + + + P+ A +
Sbjct: 282 NGDTCLNIAARLGNISIVDALLDYGAD-----PFIANKSGLRPVDFGAGLE 327
Score = 58.1 bits (140), Expect = 3e-09
Identities = 17/75 (22%), Positives = 26/75 (34%), Gaps = 4/75 (5%)
Query: 558 LGENLINLGACINLK-NNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPL 616
+ + N +N+ + +PLH VK L+ GS D G + L
Sbjct: 112 VNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVK--HGS-NRLYGDNMGESCL 168
Query: 617 HIASKEGFHYSVSIF 631
A K +Y F
Sbjct: 169 VKAVKSVNNYDSGTF 183
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 106 bits (267), Expect = 5e-26
Identities = 47/244 (19%), Positives = 85/244 (34%), Gaps = 44/244 (18%)
Query: 397 PLHSAVHGGDFKA----VELCLKSGAKISTQQFDLS----TPVHLA---CSQGALDIVRL 445
L V G + L +++ ++F T + A S G D + +
Sbjct: 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPI 67
Query: 446 MF----NLQPSEKLV--CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEK- 498
+ + + + T LH A V+ L+++GAD++ + +
Sbjct: 68 LLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRF 127
Query: 499 -------------RSPLLLAASRGGWKTVLTLVRN---KANILLKDINRRNILHLLVLNG 542
PL LAA V L N +A++ +D +LH LV
Sbjct: 128 FQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIA 187
Query: 543 GGHIKEFAEEVAAVFLGENLINLGACIN-------LKNNSNESPLHLAARYGRYNTVKKL 595
+E + V + + L+ A + L NN SPL +AA+ G+ + +
Sbjct: 188 DNT-RENTKFVTKM--YDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHI 244
Query: 596 LSSE 599
+ E
Sbjct: 245 IRRE 248
Score = 82.9 bits (205), Expect = 7e-18
Identities = 40/257 (15%), Positives = 78/257 (30%), Gaps = 46/257 (17%)
Query: 156 PLHSAVHGGDFKA----VELCLKSGAKISTQQFDLS----TPVHLA---CSQGALDIVRL 204
L V G + L +++ ++F T + A S G D + +
Sbjct: 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPI 67
Query: 205 MF----NLQPSEKLV--CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKR 258
+ + + + T LH A V+ L+++GAD++ +
Sbjct: 68 LLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQAR--- 124
Query: 259 SPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQY-KDMIDILQGGE 317
G + + L LA N+ I+ L + D+ +
Sbjct: 125 ----------GRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDS 174
Query: 318 HGRTALHIAAIY--DFDECARILVKDF------GASLKRACS-------NGYYPIHDAAK 362
G T LH + E + + K + A L + +G P+ AAK
Sbjct: 175 RGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAK 234
Query: 363 NASSKTMEVFLQFGESI 379
+ ++ +
Sbjct: 235 TGKIGIFQHIIRREIAD 251
Score = 80.6 bits (199), Expect = 4e-17
Identities = 32/213 (15%), Positives = 69/213 (32%), Gaps = 24/213 (11%)
Query: 62 QGGEHGRTALHIAAI---YDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHD 118
+ G+T L A + ++ IL+ + M + + + G +H
Sbjct: 41 REPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTG-NMREFINSPFRDVYYRGQTALHI 99
Query: 119 AAKNASSKTMEVFLQFGESI------GCSREEMISLFDAEGNLPLHSAVHGGDFKAVELC 172
A + +E+ ++ G + + + + G LPL A V
Sbjct: 100 AIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYL 159
Query: 173 LKSG---AKISTQQFDLSTPVHLA-----CSQGALDIVRLMFNL------QPSEKLVCLN 218
++G A + Q +T +H ++ V M++L +
Sbjct: 160 TENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEA 219
Query: 219 STDAQKMTPLHCAAMFDRCDVVQYLIDEGADLN 251
+ ++PL AA + + Q++I
Sbjct: 220 LLNNDGLSPLMMAAKTGKIGIFQHIIRREIADA 252
Score = 70.6 bits (173), Expect = 1e-13
Identities = 28/193 (14%), Positives = 46/193 (23%), Gaps = 48/193 (24%)
Query: 467 TPLHCAAMFDRC----DVVQYLIDEGADLNVLDKEKRS----PLLLAASRG--------- 509
L ++ +L+ L + + S L A
Sbjct: 7 PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIP 66
Query: 510 -----GWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLIN 564
KT + + LH+ + H E L+
Sbjct: 67 ILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVEL------------LVE 114
Query: 565 LGACINLKNNSN--------------ESPLHLAARYGRYNTVKKLLSSERGSFIINESDG 610
GA ++ + E PL LAA + + V L + + D
Sbjct: 115 KGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDS 174
Query: 611 EGLTPLHIASKEG 623
G T LH
Sbjct: 175 RGNTVLHALVAIA 187
Score = 56.3 bits (136), Expect = 5e-09
Identities = 27/204 (13%), Positives = 57/204 (27%), Gaps = 33/204 (16%)
Query: 3 LLSVQSDNKNKSRLIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQ--------- 53
LL + N I R + + Q LH+A E + +L++
Sbjct: 68 LLDIAEKTGNMREFI----NSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQA 123
Query: 54 ---YKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACS 110
+ D G L +AA + L + + +D S
Sbjct: 124 RGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQD---------S 174
Query: 111 NGYYPIHDAA--KNASSKTMEVFLQFGESI------GCSREEMISLFDAEGNLPLHSAVH 162
G +H + + + + + + + + +L + +G PL A
Sbjct: 175 RGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAK 234
Query: 163 GGDFKAVELCLKSGAKISTQQFDL 186
G + ++ +
Sbjct: 235 TGKIGIFQHIIRREIADAAAHHHH 258
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 98.6 bits (247), Expect = 1e-24
Identities = 54/132 (40%), Positives = 71/132 (53%), Gaps = 12/132 (9%)
Query: 466 MTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANIL 525
TPLH AA +VV+ L++ GAD+N DK R+PL LAA G + V L+ A++
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 526 LKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAAR 585
KD N R LHL N GH+ EV + L+ GA +N K+ + +PLHLAAR
Sbjct: 63 AKDKNGRTPLHLAARN--GHL-----EVV-----KLLLEAGADVNAKDKNGRTPLHLAAR 110
Query: 586 YGRYNTVKKLLS 597
G VK LL
Sbjct: 111 NGHLEVVKLLLE 122
Score = 76.2 bits (189), Expect = 7e-17
Identities = 49/158 (31%), Positives = 72/158 (45%), Gaps = 44/158 (27%)
Query: 188 TPVHLACSQGALDIVRLMFNLQPSEKLVC----LNSTDAQKMTPLHCAAMFDRCDVVQYL 243
TP+HLA G L++V+L L+ +N+ D TPLH AA +VV+ L
Sbjct: 4 TPLHLAARNGHLEVVKL---------LLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 54
Query: 244 IDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLAT-ELNKVPILLI 302
++ GAD+N DK R+PL LAA G HL +L
Sbjct: 55 LEAGADVNAKDKNGRTPLHLAARNG--------------------HLEVVKL-------- 86
Query: 303 LLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVK 340
LL+ D+ ++GRT LH+AA E ++L++
Sbjct: 87 LLEAG--ADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 122
Score = 75.5 bits (187), Expect = 1e-16
Identities = 48/176 (27%), Positives = 72/176 (40%), Gaps = 55/176 (31%)
Query: 318 HGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGE 377
+GRT LH+AA E ++L+ G A NA K
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLL-----------EAG------ADVNAKDK---------- 33
Query: 378 SIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQ 437
G PLH A G + V+L L++GA ++ + + TP+HLA
Sbjct: 34 ---------------NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN 78
Query: 438 GALDIVRLMFNLQPSEKLVC----LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGA 489
G L++V+L L+ +N+ D TPLH AA +VV+ L++ GA
Sbjct: 79 GHLEVVKL---------LLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 73.5 bits (182), Expect = 7e-16
Identities = 44/142 (30%), Positives = 69/142 (48%), Gaps = 21/142 (14%)
Query: 111 NGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVE 170
NG P+H AA+N + +++ L G D G PLH A G + V+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLL----EAGADVNAK----DKNGRTPLHLAARNGHLEVVK 52
Query: 171 LCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC----LNSTDAQKMT 226
L L++GA ++ + + TP+HLA G L++V+L L+ +N+ D T
Sbjct: 53 LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL---------LLEAGADVNAKDKNGRT 103
Query: 227 PLHCAAMFDRCDVVQYLIDEGA 248
PLH AA +VV+ L++ GA
Sbjct: 104 PLHLAARNGHLEVVKLLLEAGA 125
Score = 64.7 bits (159), Expect = 7e-13
Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 560 ENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIA 619
+ L+ GA +N K+ + +PLHLAAR G VK LL G+ +N D G TPLH+A
Sbjct: 19 KLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE--AGA-DVNAKDKNGRTPLHLA 75
Query: 620 SKEG 623
++ G
Sbjct: 76 ARNG 79
Score = 51.2 bits (124), Expect = 4e-08
Identities = 39/142 (27%), Positives = 62/142 (43%), Gaps = 22/142 (15%)
Query: 36 LHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDW 95
LHLA + ++ +LL+ D+ ++GRT LH+AA E ++L+
Sbjct: 6 LHLAARNGHLEVVKLLLEAG--ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA------ 57
Query: 96 IMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNL 155
GA + NG P+H AA+N + +++ L G D G
Sbjct: 58 ------GADVNAKDKNGRTPLHLAARNGHLEVVKLLL----EAGADVNAK----DKNGRT 103
Query: 156 PLHSAVHGGDFKAVELCLKSGA 177
PLH A G + V+L L++GA
Sbjct: 104 PLHLAARNGHLEVVKLLLEAGA 125
Score = 35.4 bits (83), Expect = 0.013
Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 16 LIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAA 75
L+ +G + + + LHLA + ++ +LL+ D+ ++GRT LH+AA
Sbjct: 54 LL--EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG--ADVNAKDKNGRTPLHLAA 109
Query: 76 IYDFDECARILVS 88
E ++L+
Sbjct: 110 RNGHLEVVKLLLE 122
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 98.6 bits (247), Expect = 1e-24
Identities = 43/163 (26%), Positives = 61/163 (37%), Gaps = 48/163 (29%)
Query: 461 TDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRN 520
T+ + T LH A++ V+YL+ G+D NV D +PL A + G
Sbjct: 6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHG----------- 54
Query: 521 KANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPL 580
HL +V E L+ A +N N+SPL
Sbjct: 55 ---------------HL--------------KVV-----ELLLQHKALVNTTGYQNDSPL 80
Query: 581 HLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
H AA+ G + VK LLS G+ N + GL P+ E
Sbjct: 81 HDAAKNGHVDIVKLLLS--YGA-SRNAVNIFGLRPVDYTDDES 120
Score = 94.4 bits (236), Expect = 4e-23
Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 13/131 (9%)
Query: 397 PLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLV 456
LH A GD +VE L++G+ + + TP+H AC+ G L +V L L+
Sbjct: 13 LLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVEL---------LL 63
Query: 457 ----CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWK 512
+N+T Q +PLH AA D+V+ L+ GA N ++ P+
Sbjct: 64 QHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKS 123
Query: 513 TVLTLVRNKAN 523
+L +N+++
Sbjct: 124 LLLLPEKNESS 134
Score = 90.2 bits (225), Expect = 1e-21
Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 13/123 (10%)
Query: 150 DAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQ 209
+ G LH A GD +VE L++G+ + + TP+H AC+ G L +V L
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVEL----- 61
Query: 210 PSEKLV----CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAA 265
L+ +N+T Q +PLH AA D+V+ L+ GA N ++ P+
Sbjct: 62 ----LLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTD 117
Query: 266 SRG 268
Sbjct: 118 DES 120
Score = 82.5 bits (205), Expect = 6e-19
Identities = 31/174 (17%), Positives = 49/174 (28%), Gaps = 58/174 (33%)
Query: 428 STPVHLACSQGALDIVRLMFNLQPSEKLV----CLNSTDAQKMTPLHCAAMFDRCDVVQY 483
T +H+A +G + V L+ N D TPLH A VV+
Sbjct: 11 ETLLHIASIKGDIPSVEY---------LLQNGSDPNVKDHAGWTPLHEACNHGHLKVVEL 61
Query: 484 LIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGG 543
L+ A +N + SPL AA G H+
Sbjct: 62 LLQHKALVNTTGYQNDSPLHDAAKNG--------------------------HV------ 89
Query: 544 GHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLS 597
++ + L++ GA N N P+ + +
Sbjct: 90 --------DIV-----KLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEK 130
Score = 77.5 bits (192), Expect = 4e-17
Identities = 28/127 (22%), Positives = 45/127 (35%), Gaps = 8/127 (6%)
Query: 220 TDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKT------N 273
T+ + T LH A++ V+YL+ G+D NV D +PL A + G K +
Sbjct: 6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH 65
Query: 274 GVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDE 333
+ + LH A + V I+ +LL Y G +
Sbjct: 66 KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYG--ASRNAVNIFGLRPVDYTDDESMKS 123
Query: 334 CARILVK 340
+ K
Sbjct: 124 LLLLPEK 130
Score = 70.1 bits (173), Expect = 1e-14
Identities = 33/178 (18%), Positives = 55/178 (30%), Gaps = 55/178 (30%)
Query: 317 EHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFG 376
G T LHIA+I L++ + + N
Sbjct: 8 HRGETLLHIASIKGDIPSVEYLLQ-----------------NGSDPNVKDH--------- 41
Query: 377 ESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACS 436
G PLH A + G K VEL L+ A ++T + +P+H A
Sbjct: 42 ----------------AGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAK 85
Query: 437 QGALDIVRLMFNLQPSEKLVC----LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGAD 490
G +DIV+L L+ N+ + + P+ ++ +
Sbjct: 86 NGHVDIVKL---------LLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESS 134
Score = 68.2 bits (168), Expect = 6e-14
Identities = 34/189 (17%), Positives = 55/189 (29%), Gaps = 66/189 (34%)
Query: 65 EHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNAS 124
G T LHIA+I L+ + + N
Sbjct: 8 HRGETLLHIASIKGDIPSVEYLLQ----------------------------NGSDPNVK 39
Query: 125 SKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQF 184
D G PLH A + G K VEL L+ A ++T +
Sbjct: 40 -------------------------DHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGY 74
Query: 185 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVC----LNSTDAQKMTPLHCAAMFDRCDVV 240
+P+H A G +DIV+L L+ N+ + + P+ ++
Sbjct: 75 QNDSPLHDAAKNGHVDIVKL---------LLSYGASRNAVNIFGLRPVDYTDDESMKSLL 125
Query: 241 QYLIDEGAD 249
+
Sbjct: 126 LLPEKNESS 134
Score = 66.7 bits (164), Expect = 2e-13
Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 16/102 (15%)
Query: 522 ANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLH 581
+ + +LH+ + G I E L+ G+ N+K+++ +PLH
Sbjct: 2 IDPF-TNHRGETLLHIASIKG--DI-----PSV-----EYLLQNGSDPNVKDHAGWTPLH 48
Query: 582 LAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
A +G V+ LL + ++N + + +PLH A+K G
Sbjct: 49 EACNHGHLKVVELLLQ--HKA-LVNTTGYQNDSPLHDAAKNG 87
Score = 60.9 bits (149), Expect = 2e-11
Identities = 31/159 (19%), Positives = 57/159 (35%), Gaps = 25/159 (15%)
Query: 23 VNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDEC 82
T N++ + +LH+A+ +P + LLQ D G T LH A + +
Sbjct: 4 PFT---NHRGETLLHIASIKGDIPSVEYLLQNG--SDPNVKDHAGWTPLHEACNHGHLKV 58
Query: 83 ARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSR 142
+L+ A + P+HDAAKN +++ L +G S
Sbjct: 59 VELLLQH------------KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASR---- 102
Query: 143 EEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKIST 181
+ + G P+ + L K+ + ++
Sbjct: 103 ----NAVNIFGLRPVDYTDDESMKSLLLLPEKNESSSAS 137
Score = 59.7 bits (146), Expect = 5e-11
Identities = 31/148 (20%), Positives = 56/148 (37%), Gaps = 14/148 (9%)
Query: 275 VNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDEC 334
T N++ + +LH+A+ +P + LLQ D G T LH A + +
Sbjct: 4 PFT---NHRGETLLHIASIKGDIPSVEYLLQNG--SDPNVKDHAGWTPLHEACNHGHLKV 58
Query: 335 ARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEG 394
+L++ A + P+HDAAKN +++ L +G S G
Sbjct: 59 VELLLQH-KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNI--------FG 109
Query: 395 NLPLHSAVHGGDFKAVELCLKSGAKIST 422
P+ + L K+ + ++
Sbjct: 110 LRPVDYTDDESMKSLLLLPEKNESSSAS 137
Score = 59.0 bits (144), Expect = 9e-11
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 566 GACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
G N+ E+ LH+A+ G +V+ LL GS N D G TPLH A G
Sbjct: 1 GIDPF-TNHRGETLLHIASIKGDIPSVEYLLQ--NGS-DPNVKDHAGWTPLHEACNHG 54
Score = 41.3 bits (98), Expect = 1e-04
Identities = 21/118 (17%), Positives = 43/118 (36%), Gaps = 16/118 (13%)
Query: 16 LIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAA 75
L+ +G + + ++ LH A + ++ +LLQ+K + G + LH AA
Sbjct: 29 LL--QNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHK--ALVNTTGYQNDSPLHDAA 84
Query: 76 IYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQ 133
+ ++L+S GAS G P+ + + + +
Sbjct: 85 KNGHVDIVKLLLSY------------GASRNAVNIFGLRPVDYTDDESMKSLLLLPEK 130
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 96.4 bits (241), Expect = 8e-24
Identities = 27/140 (19%), Positives = 51/140 (36%), Gaps = 14/140 (10%)
Query: 459 NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLV 518
+ L AA + + V+ L++ GAD N L++ R P+ + G + L+
Sbjct: 6 HMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVAELLL 64
Query: 519 RNKANILLKDINRRNI-LHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNE 577
+ A D +H G + + V L GA +++ +
Sbjct: 65 LHGAEPNCADPATLTRPVHDAARE--GFL-----DTLVV-----LHRAGARLDVCDAWGR 112
Query: 578 SPLHLAARYGRYNTVKKLLS 597
P+ LA G + + L +
Sbjct: 113 LPVDLAEEQGHRDIARYLHA 132
Score = 87.1 bits (217), Expect = 1e-20
Identities = 33/137 (24%), Positives = 61/137 (44%), Gaps = 17/137 (12%)
Query: 488 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 547
+++L + L AA+RG +TV L+ A+ + R + ++++ G
Sbjct: 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM---GSA- 57
Query: 548 EFAEEVAAVFLGENLINLGACINLKNNSNE-SPLHLAARYGRYNTVKKLLSSERGSFIIN 606
+VA E L+ GA N + + P+H AAR G +T+ L G+ ++
Sbjct: 58 ----QVA-----ELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHR--AGA-RLD 105
Query: 607 ESDGEGLTPLHIASKEG 623
D G P+ +A ++G
Sbjct: 106 VCDAWGRLPVDLAEEQG 122
Score = 85.2 bits (212), Expect = 6e-20
Identities = 31/136 (22%), Positives = 49/136 (36%), Gaps = 15/136 (11%)
Query: 393 EGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPS 452
+ L +A G + V L++GA + P+ + G+ + L
Sbjct: 11 SSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVM-MMGSAQVAEL------- 62
Query: 453 EKLVC----LNSTDAQKMT-PLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAAS 507
L+ N D +T P+H AA D + L GA L+V D R P+ LA
Sbjct: 63 --LLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEE 120
Query: 508 RGGWKTVLTLVRNKAN 523
+G L +
Sbjct: 121 QGHRDIARYLHAATGD 136
Score = 77.1 bits (191), Expect = 5e-17
Identities = 24/130 (18%), Positives = 46/130 (35%), Gaps = 10/130 (7%)
Query: 218 NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKT----- 272
+ L AA + + V+ L++ GAD N L++ R P+ + G +
Sbjct: 6 HMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVAELLL 64
Query: 273 -NGVNTRILNNKKQAV-LHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYD 330
+G + +H A + L++L + + GR + +A
Sbjct: 65 LHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAG--ARLDVCDAWGRLPVDLAEEQG 122
Query: 331 FDECARILVK 340
+ AR L
Sbjct: 123 HRDIARYLHA 132
Score = 75.9 bits (188), Expect = 1e-16
Identities = 36/181 (19%), Positives = 49/181 (27%), Gaps = 49/181 (27%)
Query: 311 DILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTME 370
I G L AA E R L+ + GA G PI
Sbjct: 4 GIHMLGGSSDAGLATAAARGQVETVRQLL-EAGADPNALNRFGRRPIQVMMMG------- 55
Query: 371 VFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLST- 429
+ V EL L GA+ + T
Sbjct: 56 ----------------------------SAQV-------AELLLLHGAEPNCADPATLTR 80
Query: 430 PVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGA 489
PVH A +G LD + ++ L+ DA P+ A D+ +YL
Sbjct: 81 PVHDAAREGFLDTLVVLH-----RAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG 135
Query: 490 D 490
D
Sbjct: 136 D 136
Score = 73.6 bits (182), Expect = 8e-16
Identities = 36/192 (18%), Positives = 48/192 (25%), Gaps = 60/192 (31%)
Query: 59 DILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHD 118
I G L AA E R L+ GA G PI
Sbjct: 4 GIHMLGGSSDAGLATAAARGQVETVRQLLEA------------GADPNALNRFGRRPIQV 51
Query: 119 AAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAK 178
+ V EL L GA+
Sbjct: 52 MMMG-----------------------------------SAQV-------AELLLLHGAE 69
Query: 179 ISTQQFDLST-PVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRC 237
+ T PVH A +G LD + ++ L+ DA P+ A
Sbjct: 70 PNCADPATLTRPVHDAAREGFLDTLVVLH-----RAGARLDVCDAWGRLPVDLAEEQGHR 124
Query: 238 DVVQYLIDEGAD 249
D+ +YL D
Sbjct: 125 DIARYLHAATGD 136
Score = 57.5 bits (140), Expect = 3e-10
Identities = 29/173 (16%), Positives = 49/173 (28%), Gaps = 40/173 (23%)
Query: 247 GADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQY 306
+++L + L AA+RG + + LL+
Sbjct: 2 SPGIHMLGGSSDAGLATAAARG--------------------QVE-------TVRQLLEA 34
Query: 307 KDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGY-YPIHDAAKNAS 365
D GR + + + A +L+ GA A P+HDAA+
Sbjct: 35 G--ADPNALNRFGRRPIQVMM-MGSAQVAELLL-LHGAEPNCADPATLTRPVHDAAREGF 90
Query: 366 SKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGA 418
T+ V + G + G LP+ A G +
Sbjct: 91 LDTLVVLHRAGARLDVCDA--------WGRLPVDLAEEQGHRDIARYLHAATG 135
Score = 35.9 bits (84), Expect = 0.011
Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 36 LHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVS 88
+H A + L++L + + GR + +A + AR L +
Sbjct: 82 VHDAAREGFLDTLVVLHRAG--ARLDVCDAWGRLPVDLAEEQGHRDIARYLHA 132
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 97.6 bits (244), Expect = 1e-23
Identities = 32/170 (18%), Positives = 55/170 (32%), Gaps = 22/170 (12%)
Query: 429 TPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEG 488
+ G + ++ TP AA + L+ E
Sbjct: 16 MEYLIEWKDGHSPSWVPSSYIA--------ADVVSEYETPWWTAARKADEQALSQLL-ED 66
Query: 489 ADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDIN-RRNILHLLVLNGGGHIK 547
D++ +D+ R+ LL A G K V L A++ +D+ LH+
Sbjct: 67 RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV--R-- 122
Query: 548 EFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLS 597
EV E L+ LGA I +++ + L LA + +
Sbjct: 123 ---PEVV-----EALVELGADIEVEDERGLTALELAREILKTTPKGNPMQ 164
Score = 95.6 bits (239), Expect = 5e-23
Identities = 32/166 (19%), Positives = 57/166 (34%), Gaps = 20/166 (12%)
Query: 459 NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLV 518
+ T + AD+ E +P AA + + + L+
Sbjct: 8 SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV---SEYETPWWTAARKADEQALSQLL 64
Query: 519 RNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKN-NSNE 577
+ ++ D N R L + G ++ L GA ++ ++
Sbjct: 65 ED-RDVDAVDENGRTALLFVAGLG--S-----DKCV-----RLLAEAGADLDHRDMRGGL 111
Query: 578 SPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
+ LH+AA Y R V+ L+ G+ I D GLT L +A +
Sbjct: 112 TALHMAAGYVRPEVVEALVE--LGA-DIEVEDERGLTALELAREIL 154
Score = 92.2 bits (230), Expect = 9e-22
Identities = 37/194 (19%), Positives = 63/194 (32%), Gaps = 26/194 (13%)
Query: 343 GASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAV 402
R G K+ S + + +E P +A
Sbjct: 4 KIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV-----------VSEYETPWWTAA 52
Query: 403 HGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC----L 458
D +A+ L + + T + G+ VRL L L
Sbjct: 53 RKADEQALSQ-LLEDRDVDAVDENGRTALLFVAGLGSDKCVRL---------LAEAGADL 102
Query: 459 NSTDAQ-KMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTL 517
+ D + +T LH AA + R +VV+ L++ GAD+ V D+ + L LA
Sbjct: 103 DHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNP 162
Query: 518 VRNKANILLKDINR 531
++ I L+ +
Sbjct: 163 MQFGRRIGLEKVIN 176
Score = 84.1 bits (209), Expect = 5e-19
Identities = 32/179 (17%), Positives = 63/179 (35%), Gaps = 22/179 (12%)
Query: 150 DAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQ 209
EG + G + A + + + TP A + + + L+
Sbjct: 11 AGEGAMEYLIEWKDGHSPSWVPSSYIAADVVS---EYETPWWTAARKADEQALSQL--LE 65
Query: 210 PSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLD-KEKRSPLLLAASRG 268
+ ++ D T L A V+ L + GADL+ D + + L +AA
Sbjct: 66 DRDV----DAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV 121
Query: 269 GWKT------NGVNTRILNNKKQAVLHLATELNKVPILLILLQY------KDMIDILQG 315
+ G + + + + L LA E+ K +Q+ + +I++L+G
Sbjct: 122 RPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEG 180
Score = 84.1 bits (209), Expect = 6e-19
Identities = 35/172 (20%), Positives = 57/172 (33%), Gaps = 26/172 (15%)
Query: 102 GASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAV 161
R G K+ S + + +E P +A
Sbjct: 4 KIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV-----------VSEYETPWWTAA 52
Query: 162 HGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC----L 217
D +A+ L + + T + G+ VRL L L
Sbjct: 53 RKADEQALSQ-LLEDRDVDAVDENGRTALLFVAGLGSDKCVRL---------LAEAGADL 102
Query: 218 NSTDAQ-KMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
+ D + +T LH AA + R +VV+ L++ GAD+ V D+ + L LA
Sbjct: 103 DHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREIL 154
Score = 80.2 bits (199), Expect = 1e-17
Identities = 28/189 (14%), Positives = 51/189 (26%), Gaps = 30/189 (15%)
Query: 67 GRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSK 126
G I A + S P AA+ A +
Sbjct: 14 GAMEYLIEWKDGHSPSWVPSSYI------------AADVV---SEYETPWWTAARKADEQ 58
Query: 127 TMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQ-QFD 185
+ L+ + + D G L G K V L ++GA + +
Sbjct: 59 ALSQLLE-----DRDVDAV----DENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG 109
Query: 186 LSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLID 245
T +H+A ++V + E + D + +T L A + +
Sbjct: 110 GLTALHMAAGYVRPEVVEALV-----ELGADIEVEDERGLTALELAREILKTTPKGNPMQ 164
Query: 246 EGADLNVLD 254
G + +
Sbjct: 165 FGRRIGLEK 173
Score = 70.2 bits (173), Expect = 4e-14
Identities = 19/138 (13%), Positives = 40/138 (28%), Gaps = 20/138 (14%)
Query: 487 EGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHI 546
+ E L+ G + + A+++ +
Sbjct: 3 NKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEY---ETPWWTAARK--AD- 56
Query: 547 KEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIIN 606
E+ L+ ++ + + + L A G V+ L G+ ++
Sbjct: 57 ----EQAL-----SQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAE--AGA-DLD 103
Query: 607 ESDGE-GLTPLHIASKEG 623
D GLT LH+A+
Sbjct: 104 HRDMRGGLTALHMAAGYV 121
Score = 69.4 bits (171), Expect = 7e-14
Identities = 37/206 (17%), Positives = 57/206 (27%), Gaps = 47/206 (22%)
Query: 218 NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNT 277
+ T + AD+
Sbjct: 8 SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV-------------------------- 41
Query: 278 RILNNKKQAVLHLATELNKVPILLILLQ--YKDMIDILQGGEHGRTALHIAAIYDFDECA 335
++ + A L LL+ D +D E+GRTAL A D+C
Sbjct: 42 ----SEYETPWWTAARKADEQALSQLLEDRDVDAVD-----ENGRTALLFVAGLGSDKCV 92
Query: 336 RILVKDFGASL-KRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEG 394
R+L + GA L R G +H AA + +E ++ G I E G
Sbjct: 93 RLLA-EAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDE--------RG 143
Query: 395 NLPLHSAVHGGDFKAVELCLKSGAKI 420
L A ++ G +I
Sbjct: 144 LTALELAREILKTTPKGNPMQFGRRI 169
Score = 57.5 bits (140), Expect = 9e-10
Identities = 34/154 (22%), Positives = 50/154 (32%), Gaps = 28/154 (18%)
Query: 29 NNKKQAVLHLATELNKVPILLILLQ--YKDMIDILQGGEHGRTALHIAAIYDFDECARIL 86
++ + A L LL+ D +D E+GRTAL A D+C R+L
Sbjct: 41 VSEYETPWWTAARKADEQALSQLLEDRDVDAVD-----ENGRTALLFVAGLGSDKCVRLL 95
Query: 87 VSEQPECDWIMVKDFGASL-KRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEM 145
GA L R G +H AA + +E ++ G I
Sbjct: 96 AEA------------GADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVE---- 139
Query: 146 ISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKI 179
D G L A ++ G +I
Sbjct: 140 ----DERGLTALELAREILKTTPKGNPMQFGRRI 169
Score = 31.7 bits (73), Expect = 0.45
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 599 ERGSFIINESDGEGLTPLHIASKEG 623
E I + + GEG I K+G
Sbjct: 1 EVNKIIGSRTAGEGAMEYLIEWKDG 25
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 95.9 bits (240), Expect = 1e-23
Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 12/140 (8%)
Query: 458 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTL 517
+ + L AA + D V+ L+ GAD+N D+ +PL LA + G + V L
Sbjct: 7 HHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVL 66
Query: 518 VRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNE 577
++N A++ D LHL GH+ E+A E L+ GA +N ++ +
Sbjct: 67 LKNGADVNAVDAIGFTPLHLAAFI--GHL-----EIA-----EVLLKHGADVNAQDKFGK 114
Query: 578 SPLHLAARYGRYNTVKKLLS 597
+ ++ G + + L
Sbjct: 115 TAFDISIGNGNEDLAEILQK 134
Score = 77.0 bits (191), Expect = 4e-17
Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 13/122 (10%)
Query: 151 AEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQP 210
++ L A G V + + +GA ++ + TP++LA + G L+IV +
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEV------ 65
Query: 211 SEKLVC----LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAAS 266
L+ +N+ DA TPLH AA ++ + L+ GAD+N DK ++ ++
Sbjct: 66 ---LLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIG 122
Query: 267 RG 268
G
Sbjct: 123 NG 124
Score = 74.7 bits (185), Expect = 3e-16
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 8/130 (6%)
Query: 217 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKT---- 272
+ + L AA + D V+ L+ GAD+N D+ +PL LA + G +
Sbjct: 7 HHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVL 66
Query: 273 --NGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYD 330
NG + ++ LHLA + + I +LL++ D+ + G+TA I+
Sbjct: 67 LKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHG--ADVNAQDKFGKTAFDISIGNG 124
Query: 331 FDECARILVK 340
++ A IL K
Sbjct: 125 NEDLAEILQK 134
Score = 60.1 bits (147), Expect = 4e-11
Identities = 34/141 (24%), Positives = 52/141 (36%), Gaps = 20/141 (14%)
Query: 64 GEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNA 123
G L AA D+ RIL++ GA + G P++ A +
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILMAN------------GADVNAKDEYGLTPLYLATAHG 58
Query: 124 SSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQ 183
+ +EV L G + DA G PLH A G + E+ LK GA ++ Q
Sbjct: 59 HLEIVEVLL----KNGADVNAV----DAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQD 110
Query: 184 FDLSTPVHLACSQGALDIVRL 204
T ++ G D+ +
Sbjct: 111 KFGKTAFDISIGNGNEDLAEI 131
Score = 57.8 bits (141), Expect = 3e-10
Identities = 32/130 (24%), Positives = 51/130 (39%), Gaps = 9/130 (6%)
Query: 316 GEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQF 375
G L AA D+ RIL+ + GA + G P++ A + + +EV L
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILMAN-GADVNAKDEYGLTPLYLATAHGHLEIVEVLL-- 67
Query: 376 GESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLAC 435
G + + G PLH A G + E+ LK GA ++ Q T ++
Sbjct: 68 --KNGADVNAVDA----IGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISI 121
Query: 436 SQGALDIVRL 445
G D+ +
Sbjct: 122 GNGNEDLAEI 131
Score = 53.2 bits (129), Expect = 1e-08
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 566 GACINLKNNSN-ESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
G+ + + S+ L AAR G+ + V+ L++ G+ +N D GLTPL++A+ G
Sbjct: 3 GSHHHHHHGSDLGKKLLEAARAGQDDEVRILMA--NGA-DVNAKDEYGLTPLYLATAHG 58
Score = 43.1 bits (103), Expect = 3e-05
Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 16/117 (13%)
Query: 16 LIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAA 75
L+ ++G + + L+LAT + I+ +LL+ D+ G T LH+AA
Sbjct: 33 LM--ANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNG--ADVNAVDAIGFTPLHLAA 88
Query: 76 IYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFL 132
E A +L+ GA + G + N + E+
Sbjct: 89 FIGHLEIAEVLLKH------------GADVNAQDKFGKTAFDISIGNGNEDLAEILQ 133
Score = 37.0 bits (87), Expect = 0.004
Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 16 LIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAA 75
L+ +G + ++ LHLA + + I +LL++ D+ + G+TA I+
Sbjct: 66 LL--KNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHG--ADVNAQDKFGKTAFDISI 121
Query: 76 IYDFDECARILVS 88
++ A IL
Sbjct: 122 GNGNEDLAEILQK 134
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping,
inhibition, prote binding, actin capping, actin-binding,
cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A
2kxp_C 2myo_A
Length = 123
Score = 94.4 bits (236), Expect = 3e-23
Identities = 33/157 (21%), Positives = 48/157 (30%), Gaps = 48/157 (30%)
Query: 467 TPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILL 526
A D V+ + +G D+N + R PL AA G
Sbjct: 9 KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCG----------------- 51
Query: 527 KDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARY 586
L E+ E L+ GA IN + + +PL A
Sbjct: 52 ---------QL--------------EIL-----EFLLLKGADINAPDKHHITPLLSAVYE 83
Query: 587 GRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
G + VK LLS +G+ +GLT +
Sbjct: 84 GHVSCVKLLLS--KGA-DKTVKGPDGLTAFEATDNQA 117
Score = 85.5 bits (213), Expect = 4e-20
Identities = 24/123 (19%), Positives = 45/123 (36%), Gaps = 13/123 (10%)
Query: 150 DAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQ 209
+ + A+ GD V+ + G ++ P+H A G L+I+
Sbjct: 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEF----- 58
Query: 210 PSEKLV----CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAA 265
L+ +N+ D +TPL A V+ L+ +GAD V + +
Sbjct: 59 ----LLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATD 114
Query: 266 SRG 268
++
Sbjct: 115 NQA 117
Score = 85.5 bits (213), Expect = 4e-20
Identities = 24/120 (20%), Positives = 44/120 (36%), Gaps = 13/120 (10%)
Query: 394 GNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSE 453
+ A+ GD V+ + G ++ P+H A G L+I+
Sbjct: 7 CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEF-------- 58
Query: 454 KLV----CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 509
L+ +N+ D +TPL A V+ L+ +GAD V + + ++
Sbjct: 59 -LLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQA 117
Score = 81.7 bits (203), Expect = 7e-19
Identities = 30/172 (17%), Positives = 50/172 (29%), Gaps = 58/172 (33%)
Query: 426 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVC----LNSTDAQKMTPLHCAAMFDRCDVV 481
A G LD V+ V +N T PLH AA + +++
Sbjct: 6 MCDKEFMWALKNGDLDEVKD---------YVAKGEDVNRTLEGGRKPLHYAADCGQLEIL 56
Query: 482 QYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLN 541
++L+ +GAD+N DK +PLL A G H+
Sbjct: 57 EFLLLKGADINAPDKHHITPLLSAVYEG--------------------------HV---- 86
Query: 542 GGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVK 593
+ L++ GA +K + ++
Sbjct: 87 ----------SCV-----KLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123
Score = 66.7 bits (164), Expect = 2e-13
Identities = 29/140 (20%), Positives = 45/140 (32%), Gaps = 20/140 (14%)
Query: 64 GEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNA 123
G A + + V++ G + R G P+H AA
Sbjct: 4 GSMCDKEFMWALKNGDLDEVKDYVAK------------GEDVNRTLEGGRKPLHYAADCG 51
Query: 124 SSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQ 183
+ +E L G I D PL SAV+ G V+L L GA + +
Sbjct: 52 QLEILEFLLLKGADINAP--------DKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKG 103
Query: 184 FDLSTPVHLACSQGALDIVR 203
D T +Q +++
Sbjct: 104 PDGLTAFEATDNQAIKALLQ 123
Score = 64.3 bits (158), Expect = 1e-12
Identities = 28/129 (21%), Positives = 43/129 (33%), Gaps = 9/129 (6%)
Query: 316 GEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQF 375
G A + + V G + R G P+H AA + +E L
Sbjct: 4 GSMCDKEFMWALKNGDLDEVKDYVAK-GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK 62
Query: 376 GESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLAC 435
G I + PL SAV+ G V+L L GA + + D T
Sbjct: 63 GADINAPDKH--------HITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATD 114
Query: 436 SQGALDIVR 444
+Q +++
Sbjct: 115 NQAIKALLQ 123
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 95.8 bits (238), Expect = 2e-21
Identities = 41/380 (10%), Positives = 86/380 (22%), Gaps = 98/380 (25%)
Query: 150 DAEGNLPLHSAV---HGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMF 206
+ + A + L L S + Q + LA G L ++ +
Sbjct: 89 GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLC 148
Query: 207 NLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNV--LDKEKRSPLLLA 264
L P+ + A+ AA V+ L + + E A
Sbjct: 149 ELAPT---EIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWA 205
Query: 265 ASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALH 324
A G H ++ LL M+ H
Sbjct: 206 AVGRG-------------------HHN-------VINFLLDCPVMLAY--AEIHEFEYGE 237
Query: 325 IAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSRE 384
F +K+ + K + +G + + ++
Sbjct: 238 KYVNP-FIARHVNRLKEMHDAFKLSNPDGVFDLVTKSE---------------------- 274
Query: 385 EMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVR 444
+G L + + D + LD +R
Sbjct: 275 ------CLQGFYMLRNLIRRND------------------------------EVLLDDIR 298
Query: 445 LMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLL 504
+ ++ + L + L A L+ + L + + +
Sbjct: 299 FLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKA---NNYYI 355
Query: 505 AASRGGWKTVLTLVRNKANI 524
+ G + + +
Sbjct: 356 NETGGRLDLRAVALEHHHHH 375
Score = 90.8 bits (225), Expect = 8e-20
Identities = 49/348 (14%), Positives = 91/348 (26%), Gaps = 39/348 (11%)
Query: 294 LNKVPILLILLQYKDMIDIL--QGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACS 351
++ + L+ L YK+ I I + + Y K + +
Sbjct: 34 ISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYN---RNAKQLWSDAHKKGI 90
Query: 352 NGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVE 411
AA S ++ L + + + AE A G +
Sbjct: 91 KSEVICFVAAITGCSSALDT-LCLLLTSDEIVKVI----QAENYQAFRLAAENGHLHVLN 145
Query: 412 LCLKSGAKI--STQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPL 469
+ + Q + LA G L ++ + L P+ A+
Sbjct: 146 RLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPT---EATAMIQAENYYAF 202
Query: 470 HCAAMF-DRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKD 528
AA+ +V+ +L+D L + + + + V L L +
Sbjct: 203 RWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSN 262
Query: 529 IN-------------RRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNS 575
+ +L L+ E + L I A
Sbjct: 263 PDGVFDLVTKSECLQGFYMLRNLIRRN----DEVLLDDIRFLLSIPGIKALAPTATIPGD 318
Query: 576 NESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
L LA R G LLS + +++ +I G
Sbjct: 319 ANELLRLALRLGNQGACALLLSIP-SVLALTKANN-----YYINETGG 360
Score = 73.1 bits (179), Expect = 6e-14
Identities = 32/260 (12%), Positives = 66/260 (25%), Gaps = 26/260 (10%)
Query: 20 SSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDF 79
+S +++ + LA E + +L L + + A +AA
Sbjct: 116 TSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGH 175
Query: 80 DECARILVSEQPECDWIMVKDFG--ASLKRACSNGYYPI------HDAAKNASSKTMEVF 131
L P M++ A A G++ + +
Sbjct: 176 LHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHE--- 232
Query: 132 LQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVH 191
++GE E + + G F V KS +
Sbjct: 233 FEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVT---KSECL------QGFYMLR 283
Query: 192 LACSQGA---LDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGA 248
+ LD +R + ++ + L + L A L+ +
Sbjct: 284 NLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPS 343
Query: 249 DLNVLDKEKRSPLLLAASRG 268
L + + + + G
Sbjct: 344 VLALTKA---NNYYINETGG 360
Score = 64.2 bits (156), Expect = 4e-11
Identities = 25/176 (14%), Positives = 39/176 (22%), Gaps = 51/176 (28%)
Query: 458 LNSTDAQKMTPLHCAAM---FDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTV 514
+ + AA+ D + L+ + V+ E LAA G
Sbjct: 85 AHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENG----- 139
Query: 515 LTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKN- 573
HL V L L +
Sbjct: 140 ---------------------HL--------------HVL-----NRLCELAPTEIMAMI 159
Query: 574 -NSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSV 628
N LAA G + + +L E A+ H++V
Sbjct: 160 QAENYHAFRLAAENGHLHVLNRLCELAPTEATAM-IQAENYYAFRWAAVGRGHHNV 214
Score = 60.0 bits (145), Expect = 8e-10
Identities = 19/151 (12%), Positives = 44/151 (29%), Gaps = 21/151 (13%)
Query: 479 DVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLL 538
+ + + ++ ++ LL + + ++ K I I +
Sbjct: 48 EAIHIFLPGTKNM------EQVRQLLCLYYAHYNRNAKQL--WSDAHKKGIKSEVICFVA 99
Query: 539 VLNG-GGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLS 597
+ G + L+ + + N LAA G + + +L
Sbjct: 100 AITGCSSALDTL----------CLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLC- 148
Query: 598 SERGSFIINESDGEGLTPLHIASKEGFHYSV 628
+ I+ E +A++ G H V
Sbjct: 149 ELAPTEIMAMIQAENYHAFRLAAENG-HLHV 178
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR
{Escherichia coli}
Length = 115
Score = 88.2 bits (220), Expect = 3e-21
Identities = 36/152 (23%), Positives = 56/152 (36%), Gaps = 48/152 (31%)
Query: 466 MTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANIL 525
TPLH AA + V+ L+ +GAD+N K+ +PL LAA G
Sbjct: 10 NTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNG---------------- 53
Query: 526 LKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAAR 585
H E+ + L+ GA +N ++ +P HLA +
Sbjct: 54 ----------HA--------------EIV-----KLLLAKGADVNARSKDGNTPEHLAKK 84
Query: 586 YGRYNTVKKLLSSERGSFIINESDGEGLTPLH 617
G + VK L + +G+ +N H
Sbjct: 85 NGHHEIVKLLDA--KGA-DVNARSWGSSHHHH 113
Score = 78.6 bits (195), Expect = 9e-18
Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 15/124 (12%)
Query: 417 GAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLV----CLNSTDAQKMTPLHCA 472
G ++ D +TP+H A G + V+ L+ +N+ TPLH A
Sbjct: 1 GHMWGSK--DGNTPLHNAAKNGHAEEVKK---------LLSKGADVNARSKDGNTPLHLA 49
Query: 473 AMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRR 532
A ++V+ L+ +GAD+N K+ +P LA G + V L A++ +
Sbjct: 50 AKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSS 109
Query: 533 NILH 536
+ H
Sbjct: 110 HHHH 113
Score = 75.5 bits (187), Expect = 8e-17
Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 150 DAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQ 209
+GN PLH+A G + V+ L GA ++ + D +TP+HLA G +IV+L
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKL----- 60
Query: 210 PSEKLVC----LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPL 261
L+ +N+ TP H A ++V+ L +GAD+N
Sbjct: 61 ----LLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112
Score = 67.0 bits (165), Expect = 9e-14
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 15/97 (15%)
Query: 176 GAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLV----CLNSTDAQKMTPLHCA 231
G ++ D +TP+H A G + V+ L+ +N+ TPLH A
Sbjct: 1 GHMWGSK--DGNTPLHNAAKNGHAEEVKK---------LLSKGADVNARSKDGNTPLHLA 49
Query: 232 AMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
A ++V+ L+ +GAD+N K+ +P LA G
Sbjct: 50 AKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNG 86
Score = 67.0 bits (165), Expect = 1e-13
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 15/89 (16%)
Query: 535 LHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKK 594
LH NG H E + L++ GA +N ++ +PLHLAA+ G VK
Sbjct: 13 LHNAAKNG--HA-----EEV-----KKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKL 60
Query: 595 LLSSERGSFIINESDGEGLTPLHIASKEG 623
LL+ +G+ +N +G TP H+A K G
Sbjct: 61 LLA--KGA-DVNARSKDGNTPEHLAKKNG 86
Score = 55.8 bits (136), Expect = 7e-10
Identities = 33/130 (25%), Positives = 53/130 (40%), Gaps = 20/130 (15%)
Query: 62 QGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAK 121
G + G T LH AA E + L+S+ GA + +G P+H AAK
Sbjct: 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSK------------GADVNARSKDGNTPLHLAAK 51
Query: 122 NASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKIST 181
N ++ +++ L G + +GN P H A G + V+L GA ++
Sbjct: 52 NGHAEIVKLLLAKGADVNAR--------SKDGNTPEHLAKKNGHHEIVKLLDAKGADVNA 103
Query: 182 QQFDLSTPVH 191
+ + S H
Sbjct: 104 RSWGSSHHHH 113
Score = 54.7 bits (133), Expect = 2e-09
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 9/119 (7%)
Query: 314 QGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFL 373
G + G T LH AA E + L+ GA + +G P+H AAKN ++ +++ L
Sbjct: 4 WGSKDGNTPLHNAAKNGHAEEVKKLL-SKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL 62
Query: 374 QFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVH 432
G + + +GN P H A G + V+L GA ++ + + S H
Sbjct: 63 AKGADVNARSK--------DGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113
Score = 27.0 bits (61), Expect = 9.5
Identities = 9/19 (47%), Positives = 10/19 (52%), Gaps = 2/19 (10%)
Query: 605 INESDGEGLTPLHIASKEG 623
DG TPLH A+K G
Sbjct: 4 WGSKDGN--TPLHNAAKNG 20
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 78.2 bits (194), Expect = 6e-18
Identities = 43/132 (32%), Positives = 55/132 (41%), Gaps = 45/132 (34%)
Query: 466 MTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANIL 525
TPLH AA +VV+ L++ GAD+N DK R+PL LAA G
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG---------------- 46
Query: 526 LKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAAR 585
HL EV + L+ GA +N K+ + +PLHLAAR
Sbjct: 47 ----------HL--------------EVV-----KLLLEAGADVNAKDKNGRTPLHLAAR 77
Query: 586 YGRYNTVKKLLS 597
G VK LL
Sbjct: 78 NGHLEVVKLLLE 89
Score = 68.2 bits (168), Expect = 2e-14
Identities = 37/98 (37%), Positives = 52/98 (53%), Gaps = 13/98 (13%)
Query: 429 TPVHLACSQGALDIVRLMFNLQPSEKLV----CLNSTDAQKMTPLHCAAMFDRCDVVQYL 484
TP+HLA G L++V+L L+ +N+ D TPLH AA +VV+ L
Sbjct: 4 TPLHLAARNGHLEVVKL---------LLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 54
Query: 485 IDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKA 522
++ GAD+N DK R+PL LAA G + V L+ A
Sbjct: 55 LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 67.8 bits (167), Expect = 3e-14
Identities = 34/85 (40%), Positives = 47/85 (55%), Gaps = 13/85 (15%)
Query: 188 TPVHLACSQGALDIVRLMFNLQPSEKLV----CLNSTDAQKMTPLHCAAMFDRCDVVQYL 243
TP+HLA G L++V+L L+ +N+ D TPLH AA +VV+ L
Sbjct: 4 TPLHLAARNGHLEVVKL---------LLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 54
Query: 244 IDEGADLNVLDKEKRSPLLLAASRG 268
++ GAD+N DK R+PL LAA G
Sbjct: 55 LEAGADVNAKDKNGRTPLHLAARNG 79
Score = 66.2 bits (163), Expect = 8e-14
Identities = 34/100 (34%), Positives = 53/100 (53%), Gaps = 13/100 (13%)
Query: 153 GNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSE 212
G PLH A G + V+L L++GA ++ + + TP+HLA G L++V+L
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL-------- 53
Query: 213 KLVC----LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGA 248
L+ +N+ D TPLH AA +VV+ L++ GA
Sbjct: 54 -LLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 66.2 bits (163), Expect = 8e-14
Identities = 34/100 (34%), Positives = 53/100 (53%), Gaps = 13/100 (13%)
Query: 394 GNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSE 453
G PLH A G + V+L L++GA ++ + + TP+HLA G L++V+L
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL-------- 53
Query: 454 KLVC----LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGA 489
L+ +N+ D TPLH AA +VV+ L++ GA
Sbjct: 54 -LLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 63.5 bits (156), Expect = 8e-13
Identities = 36/116 (31%), Positives = 54/116 (46%), Gaps = 29/116 (25%)
Query: 225 MTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKK 284
TPLH AA +VV+ L++ GAD+N DK R+PL LAA G
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG---------------- 46
Query: 285 QAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVK 340
HL ++ +LL+ D+ ++GRT LH+AA E ++L++
Sbjct: 47 ----HLE-------VVKLLLEAG--ADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 63.1 bits (155), Expect = 1e-12
Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 562 LINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASK 621
L+ GA +N K+ + +PLHLAAR G VK LL G+ +N D G TPLH+A++
Sbjct: 21 LLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE--AGA-DVNAKDKNGRTPLHLAAR 77
Query: 622 EG 623
G
Sbjct: 78 NG 79
Score = 48.9 bits (118), Expect = 1e-07
Identities = 34/128 (26%), Positives = 51/128 (39%), Gaps = 42/128 (32%)
Query: 318 HGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGE 377
+GRT LH+AA E ++L+ G A NA K
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLL-----------EAG------ADVNAKDK---------- 33
Query: 378 SIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQ 437
G PLH A G + V+L L++GA ++ + + TP+HLA
Sbjct: 34 ---------------NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN 78
Query: 438 GALDIVRL 445
G L++V+L
Sbjct: 79 GHLEVVKL 86
Score = 48.5 bits (117), Expect = 2e-07
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 8/94 (8%)
Query: 111 NGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVE 170
NG P+H AA+N + +++ L G D G PLH A G + V+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLL----EAGADVNAK----DKNGRTPLHLAARNGHLEVVK 52
Query: 171 LCLKSGAKISTQQFDLSTPVHLACSQGALDIVRL 204
L L++GA ++ + + TP+HLA G L++V+L
Sbjct: 53 LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 86
Score = 48.1 bits (116), Expect = 2e-07
Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 20/112 (17%)
Query: 66 HGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASS 125
+GRT LH+AA E ++L+ GA + NG P+H AA+N
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEA------------GADVNAKDKNGRTPLHLAARNGHL 48
Query: 126 KTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGA 177
+ +++ L+ G + D G PLH A G + V+L L++GA
Sbjct: 49 EVVKLLLEAGADVNAK--------DKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 34.3 bits (80), Expect = 0.015
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 20 SSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDF 79
+G + + + LHLA + ++ +LL+ D+ ++GRT LH+AA
Sbjct: 23 EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG--ADVNAKDKNGRTPLHLAARNGH 80
Query: 80 DECARILVS 88
E ++L+
Sbjct: 81 LEVVKLLLE 89
Score = 26.9 bits (61), Expect = 6.6
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 612 GLTPLHIASKEG 623
G TPLH+A++ G
Sbjct: 2 GRTPLHLAARNG 13
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 71.1 bits (175), Expect = 3e-15
Identities = 24/90 (26%), Positives = 40/90 (44%)
Query: 462 DAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNK 521
+ L AA + D V+ L+ GAD+ DK +PL LAA G + V L+
Sbjct: 21 GSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAG 80
Query: 522 ANILLKDINRRNILHLLVLNGGGHIKEFAE 551
A++ +D + + + NG + E +
Sbjct: 81 ADVXAQDKFGKTAFDISIDNGNEDLAEILQ 110
Score = 70.7 bits (174), Expect = 4e-15
Identities = 26/121 (21%), Positives = 44/121 (36%), Gaps = 16/121 (13%)
Query: 401 AVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC--- 457
+ G+ + + DL + A G D VR+ L+
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGS---DLGKKLLEAARAGQDDEVRI---------LMANGA 48
Query: 458 -LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLT 516
+ + D TPLH AA +VV+ L++ GAD+ DK ++ ++ G
Sbjct: 49 DVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEI 108
Query: 517 L 517
L
Sbjct: 109 L 109
Score = 70.3 bits (173), Expect = 6e-15
Identities = 25/113 (22%), Positives = 43/113 (38%), Gaps = 16/113 (14%)
Query: 160 AVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC--- 216
+ G+ + + DL + A G D VR+ L+
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGS---DLGKKLLEAARAGQDDEVRI---------LMANGA 48
Query: 217 -LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
+ + D TPLH AA +VV+ L++ GAD+ DK ++ ++ G
Sbjct: 49 DVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNG 101
Score = 67.6 bits (166), Expect = 4e-14
Identities = 31/161 (19%), Positives = 45/161 (27%), Gaps = 51/161 (31%)
Query: 472 AAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINR 531
+ L+ G+ + + LL AA G
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMG---SDLGKKLLEAARAG---------------------- 35
Query: 532 RNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNT 591
+ L+ GA + K+ + +PLHLAAR G
Sbjct: 36 ----QD--------------DEV-----RILMANGADVAAKDKNGSTPLHLAARNGHLEV 72
Query: 592 VKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQ 632
VK LL G+ + D G T I+ G I Q
Sbjct: 73 VKLLLE--AGA-DVXAQDKFGKTAFDISIDNGNEDLAEILQ 110
Score = 61.1 bits (149), Expect = 1e-11
Identities = 30/119 (25%), Positives = 44/119 (36%), Gaps = 31/119 (26%)
Query: 221 DAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRIL 280
+ L AA + D V+ L+ GAD+ DK +PL LAA G
Sbjct: 21 GSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNG------------ 68
Query: 281 NNKKQAVLHLAT-ELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARIL 338
HL +L LL+ D+ + G+TA I+ ++ A IL
Sbjct: 69 --------HLEVVKL--------LLEAG--ADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 54.5 bits (132), Expect = 2e-09
Identities = 24/142 (16%), Positives = 43/142 (30%), Gaps = 33/142 (23%)
Query: 231 AAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHL 290
+ L+ G+ + + LL AA G
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMG---SDLGKKLLEAARAG--------------------QD 37
Query: 291 ATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRAC 350
V IL+ + D+ ++G T LH+AA E ++L+ + GA +
Sbjct: 38 DE----VRILM-----ANGADVAAKDKNGSTPLHLAARNGHLEVVKLLL-EAGADVXAQD 87
Query: 351 SNGYYPIHDAAKNASSKTMEVF 372
G + N + E+
Sbjct: 88 KFGKTAFDISIDNGNEDLAEIL 109
Score = 44.5 bits (106), Expect = 6e-06
Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 9/96 (9%)
Query: 317 EHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFG 376
L AA D+ RIL+ GA + NG P+H AA+N + +++ L+ G
Sbjct: 22 SDLGKKLLEAARAGQDDEVRILM-ANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAG 80
Query: 377 ESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVEL 412
+ + G ++ G+ E+
Sbjct: 81 ADVXAQDK--------FGKTAFDISIDNGNEDLAEI 108
Score = 44.1 bits (105), Expect = 9e-06
Identities = 22/107 (20%), Positives = 38/107 (35%), Gaps = 20/107 (18%)
Query: 65 EHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNAS 124
L AA D+ RIL++ GA + NG P+H AA+N
Sbjct: 22 SDLGKKLLEAARAGQDDEVRILMAN------------GADVAAKDKNGSTPLHLAARNGH 69
Query: 125 SKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVEL 171
+ +++ L+ G + D G ++ G+ E+
Sbjct: 70 LEVVKLLLEAGADVXAQ--------DKFGKTAFDISIDNGNEDLAEI 108
Score = 42.9 bits (102), Expect = 2e-05
Identities = 18/103 (17%), Positives = 33/103 (32%), Gaps = 14/103 (13%)
Query: 29 NNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVS 88
+ L A + + IL+ D+ ++G T LH+AA E ++L+
Sbjct: 21 GSDLGKKLLEAARAGQDDEVRILMANG--ADVAAKDKNGSTPLHLAARNGHLEVVKLLLE 78
Query: 89 EQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVF 131
GA + G + N + E+
Sbjct: 79 A------------GADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 63.1 bits (153), Expect = 4e-11
Identities = 22/132 (16%), Positives = 46/132 (34%), Gaps = 10/132 (7%)
Query: 399 HSAVHGGDFKAVELCLKSGAKISTQQF------DLSTPVHLACSQGALDIVRLM-FNLQP 451
AV D + G ++ + T +HLA + ++ F +Q
Sbjct: 135 CEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN 194
Query: 452 SEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGW 511
S L+ + T LH + D + ++ L+ A + + ++ +PL +A
Sbjct: 195 S---GNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHE 251
Query: 512 KTVLTLVRNKAN 523
L + +
Sbjct: 252 HCEELLTQALSG 263
Score = 61.9 bits (150), Expect = 1e-10
Identities = 21/118 (17%), Positives = 43/118 (36%), Gaps = 10/118 (8%)
Query: 158 HSAVHGGDFKAVELCLKSGAKISTQQF------DLSTPVHLACSQGALDIVRLM-FNLQP 210
AV D + G ++ + T +HLA + ++ F +Q
Sbjct: 135 CEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN 194
Query: 211 SEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
S L+ + T LH + D + ++ L+ A + + ++ +PL +A
Sbjct: 195 S---GNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLK 249
Score = 53.1 bits (127), Expect = 8e-08
Identities = 14/109 (12%), Positives = 35/109 (32%), Gaps = 5/109 (4%)
Query: 110 SNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAV 169
+H A ++ ++ + + F + + +G+ LH + + +
Sbjct: 167 EPDETALHLAVRSVDRTSLHI-VDFLVQNSGN----LDKQTGKGSTALHYCCLTDNAECL 221
Query: 170 ELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLN 218
+L L+ A I TP+ +A L+ ++
Sbjct: 222 KLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNSHVH 270
Score = 50.8 bits (121), Expect = 5e-07
Identities = 14/109 (12%), Positives = 35/109 (32%), Gaps = 5/109 (4%)
Query: 351 SNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAV 410
+H A ++ ++ + + F + + +G+ LH + + +
Sbjct: 167 EPDETALHLAVRSVDRTSLHI-VDFLVQNSGN----LDKQTGKGSTALHYCCLTDNAECL 221
Query: 411 ELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLN 459
+L L+ A I TP+ +A L+ ++
Sbjct: 222 KLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNSHVH 270
Score = 50.4 bits (120), Expect = 6e-07
Identities = 23/118 (19%), Positives = 37/118 (31%), Gaps = 32/118 (27%)
Query: 226 TPLHCA---AMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNN 282
T LH A +V +L+ +L+ + + L
Sbjct: 171 TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTAL--------------------- 209
Query: 283 KKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVK 340
H + L +LL+ K I+I E G T L IA + C +L +
Sbjct: 210 ------HYCCLTDNAECLKLLLRGKASIEIAN--ESGETPLDIAKRLKHEHCEELLTQ 259
Score = 49.2 bits (117), Expect = 2e-06
Identities = 29/119 (24%), Positives = 44/119 (36%), Gaps = 22/119 (18%)
Query: 288 LHLATE---LNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGA 344
LHLA + I+ L+Q +D G TALH + D EC ++L++ A
Sbjct: 173 LHLAVRSVDRTSLHIVDFLVQNSGNLDKQT--GKGSTALHYCCLTDNAECLKLLLR-GKA 229
Query: 345 SLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVH 403
S++ A +G P+ A + E+ Q A G H V
Sbjct: 230 SIEIANESGETPLDIAKRLKHEHCEELLTQ----------------ALSGRFNSHVHVE 272
Score = 48.8 bits (116), Expect = 2e-06
Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 3/85 (3%)
Query: 467 TPLHCA---AMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKAN 523
T LH A +V +L+ +L+ + + L + + L+R KA+
Sbjct: 171 TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKAS 230
Query: 524 ILLKDINRRNILHLLVLNGGGHIKE 548
I + + + L + H +E
Sbjct: 231 IEIANESGETPLDIAKRLKHEHCEE 255
Score = 47.3 bits (112), Expect = 6e-06
Identities = 17/106 (16%), Positives = 36/106 (33%), Gaps = 15/106 (14%)
Query: 545 HIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFI 604
H+ + + ++ + + L+ ++ + + LH +K LL +
Sbjct: 174 HLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLR--GKA-S 230
Query: 605 INESDGEGLTPLHIASKEGFHYSVSIFQ------------VTYVWC 638
I ++ G TPL IA + + + V Y W
Sbjct: 231 IEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNSHVHVEYEWR 276
Score = 44.6 bits (105), Expect = 5e-05
Identities = 24/158 (15%), Positives = 48/158 (30%), Gaps = 14/158 (8%)
Query: 94 DWI----MVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLF 149
D+I M + + + + + +A K + G + +
Sbjct: 108 DYITAKYMERRYARKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPL--ANG 165
Query: 150 DAEGNLPLHSAVHGGD---FKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMF 206
LH AV D V+ +++ + Q ST +H C + ++L+
Sbjct: 166 HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL 225
Query: 207 NLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 244
+ S + + TPL A + L
Sbjct: 226 RGKAS-----IEIANESGETPLDIAKRLKHEHCEELLT 258
Score = 43.1 bits (101), Expect = 1e-04
Identities = 25/101 (24%), Positives = 39/101 (38%), Gaps = 17/101 (16%)
Query: 36 LHLATE---LNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPE 92
LHLA + I+ L+Q +D G TALH + D EC ++L+
Sbjct: 173 LHLAVRSVDRTSLHIVDFLVQNSGNLDKQT--GKGSTALHYCCLTDNAECLKLLLR---- 226
Query: 93 CDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQ 133
AS++ A +G P+ A + E+ Q
Sbjct: 227 --------GKASIEIANESGETPLDIAKRLKHEHCEELLTQ 259
Score = 41.9 bits (98), Expect = 3e-04
Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 4/89 (4%)
Query: 4 LSVQSDNKNKSRLIP--SSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDIL 61
L+V+S ++ ++ + N K LH + L +LL+ K I+I
Sbjct: 175 LAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIA 234
Query: 62 QGGEHGRTALHIAAIYDFDECARILVSEQ 90
E G T L IA + C +L
Sbjct: 235 N--ESGETPLDIAKRLKHEHCEELLTQAL 261
Score = 40.0 bits (93), Expect = 0.001
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 564 NLGACINLKNNS--NESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASK 621
+L I L N +E+ LHLA R ++ + + S +++ G+G T LH
Sbjct: 155 DLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCL 214
Query: 622 EG 623
Sbjct: 215 TD 216
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 62.3 bits (151), Expect = 1e-10
Identities = 20/121 (16%), Positives = 46/121 (38%), Gaps = 16/121 (13%)
Query: 158 HSAVHGGDFKAVELCLKSGAKISTQQF------DLSTPVHLACSQGALDIVRLMFNLQPS 211
+A+ D +V +G +HLA + L+
Sbjct: 156 WTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLV------ 209
Query: 212 EKLVC----LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASR 267
+ ++ L++ A T LH AA++++ D ++ L+ A + +++ + L +A +
Sbjct: 210 DFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKK 269
Query: 268 G 268
Sbjct: 270 H 270
Score = 62.3 bits (151), Expect = 1e-10
Identities = 20/121 (16%), Positives = 46/121 (38%), Gaps = 16/121 (13%)
Query: 399 HSAVHGGDFKAVELCLKSGAKISTQQF------DLSTPVHLACSQGALDIVRLMFNLQPS 452
+A+ D +V +G +HLA + L+
Sbjct: 156 WTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLV------ 209
Query: 453 EKLVC----LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASR 508
+ ++ L++ A T LH AA++++ D ++ L+ A + +++ + L +A +
Sbjct: 210 DFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKK 269
Query: 509 G 509
Sbjct: 270 H 270
Score = 52.3 bits (125), Expect = 2e-07
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 6/90 (6%)
Query: 288 LHLATELNK---VPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGA 344
LHLA ++ +P++ ++Q +D G TALH AA+Y+ +C ++L+K A
Sbjct: 194 LHLAVKVANQASLPLVDFIIQNGGHLDAKA--ADGNTALHYAALYNQPDCLKLLLK-GRA 250
Query: 345 SLKRACSNGYYPIHDAAKNASSKTMEVFLQ 374
+ G + A K + E+ Q
Sbjct: 251 LVGTVNEAGETALDIARKKHHKECEELLEQ 280
Score = 50.4 bits (120), Expect = 7e-07
Identities = 21/102 (20%), Positives = 37/102 (36%), Gaps = 12/102 (11%)
Query: 531 RRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYN 590
+LHL V + +I G ++ K + LH AA Y + +
Sbjct: 190 EELVLHLAVKVANQASLPLVDF---------IIQNGGHLDAKAADGNTALHYAALYNQPD 240
Query: 591 TVKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQ 632
+K LL + ++ + G T L IA K+ + +
Sbjct: 241 CLKLLLK--GRA-LVGTVNEAGETALDIARKKHHKECEELLE 279
Score = 46.9 bits (111), Expect = 1e-05
Identities = 23/114 (20%), Positives = 41/114 (35%), Gaps = 11/114 (9%)
Query: 108 ACSNGYYPIHDAAKNASSKT---MEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGG 164
A + +H A K A+ + ++ +Q G + A+GN LH A
Sbjct: 186 AQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAK--------AADGNTALHYAALYN 237
Query: 165 DFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLN 218
++L LK A + T T + +A + + L+ Q L+
Sbjct: 238 QPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAFPLH 291
Score = 46.5 bits (110), Expect = 1e-05
Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 17/101 (16%)
Query: 36 LHLATELNK---VPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPE 92
LHLA ++ +P++ ++Q +D G TALH AA+Y+ +C ++L+
Sbjct: 194 LHLAVKVANQASLPLVDFIIQNGGHLDAKA--ADGNTALHYAALYNQPDCLKLLLK---- 247
Query: 93 CDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQ 133
A + G + A K + E+ Q
Sbjct: 248 --------GRALVGTVNEAGETALDIARKKHHKECEELLEQ 280
Score = 45.4 bits (107), Expect = 3e-05
Identities = 24/118 (20%), Positives = 39/118 (33%), Gaps = 32/118 (27%)
Query: 226 TPLHCAAMFDRCD---VVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNN 282
LH A +V ++I G L+ + + L
Sbjct: 192 LVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL--------------------- 230
Query: 283 KKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVK 340
H A N+ L +LL+ + ++ + E G TAL IA EC +L +
Sbjct: 231 ------HYAALYNQPDCLKLLLKGRALVGTV--NEAGETALDIARKKHHKECEELLEQ 280
Score = 43.8 bits (103), Expect = 8e-05
Identities = 14/85 (16%), Positives = 28/85 (32%), Gaps = 3/85 (3%)
Query: 467 TPLHCAAMFDRCD---VVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKAN 523
LH A +V ++I G L+ + + L AA + L++ +A
Sbjct: 192 LVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRAL 251
Query: 524 ILLKDINRRNILHLLVLNGGGHIKE 548
+ + L + +E
Sbjct: 252 VGTVNEAGETALDIARKKHHKECEE 276
Score = 43.4 bits (102), Expect = 1e-04
Identities = 24/114 (21%), Positives = 42/114 (36%), Gaps = 11/114 (9%)
Query: 349 ACSNGYYPIHDAAKNASSKT---MEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGG 405
A + +H A K A+ + ++ +Q G + AA+GN LH A
Sbjct: 186 AQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAK--------AADGNTALHYAALYN 237
Query: 406 DFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLN 459
++L LK A + T T + +A + + L+ Q L+
Sbjct: 238 QPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAFPLH 291
Score = 40.0 bits (93), Expect = 0.001
Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Query: 22 GVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDE 81
G + LH A N+ L +LL+ + ++ + E G TAL IA E
Sbjct: 216 GGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTV--NEAGETALDIARKKHHKE 273
Query: 82 CARILVSEQ 90
C +L Q
Sbjct: 274 CEELLEQAQ 282
Score = 37.7 bits (87), Expect = 0.010
Identities = 19/109 (17%), Positives = 33/109 (30%), Gaps = 17/109 (15%)
Query: 63 GGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKN 122
LH+A + P D+I+ G L ++G +H AA
Sbjct: 186 AQAPEELVLHLA-------VKVANQASLPLVDFIIQ--NGGHLDAKAADGNTALHYAALY 236
Query: 123 ASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVEL 171
+++ L+ +G + G L A + EL
Sbjct: 237 NQPDCLKLLLKGRALVGTV--------NEAGETALDIARKKHHKECEEL 277
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 59.9 bits (145), Expect = 1e-09
Identities = 27/148 (18%), Positives = 57/148 (38%), Gaps = 14/148 (9%)
Query: 157 LHSAVHGGDFKAVELCLKSGAKISTQ------QFDLSTPVHLAC---SQGALDIVRLMFN 207
L +A+ D +V +G Q +HLA +Q +L +V +
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFI-- 193
Query: 208 LQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASR 267
+Q L++ A T LH AA++++ D ++ L+ A + +++ + L +A +
Sbjct: 194 IQNG---GHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKK 250
Query: 268 GGWKTNGVNTRILNNKKQAVLHLATELN 295
+ + + LH+
Sbjct: 251 HHKECEELLEQAQAGTFAFPLHVDYSWV 278
Score = 58.0 bits (140), Expect = 5e-09
Identities = 25/121 (20%), Positives = 51/121 (42%), Gaps = 14/121 (11%)
Query: 398 LHSAVHGGDFKAVELCLKSGAKISTQ------QFDLSTPVHLAC---SQGALDIVRLMFN 448
L +A+ D +V +G Q +HLA +Q +L +V +
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFI-- 193
Query: 449 LQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASR 508
+Q L++ A T LH AA++++ D ++ L+ A + +++ + L +A +
Sbjct: 194 IQNG---GHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKK 250
Query: 509 G 509
Sbjct: 251 H 251
Score = 54.5 bits (131), Expect = 7e-08
Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 6/117 (5%)
Query: 261 LLLAASRGGWKTNGVNTRILNNKKQAVLHLATEL---NKVPILLILLQYKDMIDILQGGE 317
+L A + G + ++ VLHLA ++ +P++ ++Q +D
Sbjct: 148 VLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKA--A 205
Query: 318 HGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQ 374
G TALH AA+Y+ +C ++L+K A + G + A K + E+ Q
Sbjct: 206 DGNTALHYAALYNQPDCLKLLLKG-RALVGTVNEAGETALDIARKKHHKECEELLEQ 261
Score = 46.8 bits (111), Expect = 2e-05
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 23 VNTRILNNKKQAVLHLATEL---NKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDF 79
+ ++ VLHLA ++ +P++ ++Q +D G TALH AA+Y+
Sbjct: 162 LPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKA--ADGNTALHYAALYNQ 219
Query: 80 DECARILV 87
+C ++L+
Sbjct: 220 PDCLKLLL 227
Score = 41.4 bits (97), Expect = 7e-04
Identities = 23/108 (21%), Positives = 40/108 (37%), Gaps = 18/108 (16%)
Query: 528 DINRRNILHLLVLNGGG---HIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAA 584
+LHL V + +F +I G ++ K + LH AA
Sbjct: 168 QAPEELVLHLAVKVANQASLPLVDF------------IIQNGGHLDAKAADGNTALHYAA 215
Query: 585 RYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQ 632
Y + + +K LL +G ++ + G T L IA K+ + +
Sbjct: 216 LYNQPDCLKLLL---KGRALVGTVNEAGETALDIARKKHHKECEELLE 260
Score = 39.1 bits (91), Expect = 0.004
Identities = 26/124 (20%), Positives = 44/124 (35%), Gaps = 13/124 (10%)
Query: 100 DFGASLKRACSN--GYYPIHDAAKNASSKTM---EVFLQFGESIGCSREEMISLFDAEGN 154
DFG L + +H A K A+ ++ + +Q G + A+GN
Sbjct: 157 DFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL--------DAKAADGN 208
Query: 155 LPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKL 214
LH A ++L LK A + T T + +A + + L+ Q
Sbjct: 209 TALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFA 268
Query: 215 VCLN 218
L+
Sbjct: 269 FPLH 272
Score = 36.0 bits (83), Expect = 0.032
Identities = 27/124 (21%), Positives = 45/124 (36%), Gaps = 13/124 (10%)
Query: 341 DFGASLKRACSN--GYYPIHDAAKNASSKTM---EVFLQFGESIGCSREEMISLFAAEGN 395
DFG L + +H A K A+ ++ + +Q G + AA+GN
Sbjct: 157 DFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL--------DAKAADGN 208
Query: 396 LPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKL 455
LH A ++L LK A + T T + +A + + L+ Q
Sbjct: 209 TALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFA 268
Query: 456 VCLN 459
L+
Sbjct: 269 FPLH 272
Score = 29.5 bits (66), Expect = 3.4
Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Query: 22 GVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDE 81
G + LH A N+ L +LL+ + ++ + E G TAL IA E
Sbjct: 197 GGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVN--EAGETALDIARKKHHKE 254
Query: 82 CARILVSEQP 91
C +L Q
Sbjct: 255 CEELLEQAQA 264
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 55.9 bits (134), Expect = 2e-08
Identities = 25/114 (21%), Positives = 42/114 (36%), Gaps = 7/114 (6%)
Query: 157 LHSAVHGGDFKAVELCLKSGAKISTQQ--FDLSTPVHLACSQGALDIVRLMFNLQPSEKL 214
++ H + L GA ++ D +TP+ A + +L + +
Sbjct: 204 FRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN--- 260
Query: 215 VCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
+N D+ PLH A + + + GADL D E R PL +A
Sbjct: 261 --VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETA 312
Score = 47.1 bits (111), Expect = 1e-05
Identities = 29/166 (17%), Positives = 45/166 (27%), Gaps = 29/166 (17%)
Query: 174 KSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAM 233
S L L + G + M + V + TPL A
Sbjct: 185 SKPEPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATA 244
Query: 234 FDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATE 293
+ ++L+ GA++N D R P LH AT
Sbjct: 245 ANSLLACEFLLQNGANVNQADSAGRGP---------------------------LHHATI 277
Query: 294 LNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILV 339
L + + L+ + GR L IA + +L
Sbjct: 278 LGHTGLACLFLKRGADLGARD--SEGRDPLTIAMETANADIVTLLR 321
Score = 45.9 bits (108), Expect = 2e-05
Identities = 25/134 (18%), Positives = 43/134 (32%)
Query: 415 KSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAM 474
S L L + G + M + V + TPL A
Sbjct: 185 SKPEPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATA 244
Query: 475 FDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNI 534
+ ++L+ GA++N D R PL A G ++ A++ +D R+
Sbjct: 245 ANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDP 304
Query: 535 LHLLVLNGGGHIKE 548
L + + I
Sbjct: 305 LTIAMETANADIVT 318
Score = 44.8 bits (105), Expect = 6e-05
Identities = 26/122 (21%), Positives = 41/122 (33%), Gaps = 8/122 (6%)
Query: 108 ACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFK 167
+ P+ A S E LQ G ++ + D+ G PLH A G
Sbjct: 231 GGQDNATPLIQATAANSLLACEFLLQNGANV--------NQADSAGRGPLHHATILGHTG 282
Query: 168 AVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTP 227
L LK GA + + + P+ +A DIV L+ + E +
Sbjct: 283 LACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLD 342
Query: 228 LH 229
+
Sbjct: 343 IF 344
Score = 44.0 bits (103), Expect = 1e-04
Identities = 27/137 (19%), Positives = 41/137 (29%), Gaps = 11/137 (8%)
Query: 348 RACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDF 407
+ G + S TM L G + + PL A
Sbjct: 195 GSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGG------QDNATPLIQATAANSL 248
Query: 408 KAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMT 467
A E L++GA ++ P+H A G + L L + D++
Sbjct: 249 LACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGAD-----LGARDSEGRD 303
Query: 468 PLHCAAMFDRCDVVQYL 484
PL A D+V L
Sbjct: 304 PLTIAMETANADIVTLL 320
Score = 42.8 bits (100), Expect = 3e-04
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Query: 562 LINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASK 621
L+ GA +N +++ PLH A G L +RG+ + D EG PL IA +
Sbjct: 254 LLQNGANVNQADSAGRGPLHHATILGHTGLACLFL--KRGA-DLGARDSEGRDPLTIAME 310
Query: 622 EGFHYSVSIFQVTYVWC 638
V++ ++ +
Sbjct: 311 TANADIVTLLRLAKMRE 327
Score = 42.1 bits (98), Expect = 4e-04
Identities = 30/156 (19%), Positives = 48/156 (30%), Gaps = 10/156 (6%)
Query: 317 EHGRTALHIAAIYDFDECARILVKDFGASL--KRACSNGYYPIHDAAKNASSKTMEVFLQ 374
H L A+ + GA + + P+ A S E LQ
Sbjct: 197 LHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQ 256
Query: 375 FGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLA 434
G ++ + + G PLH A G L LK GA + + + P+ +A
Sbjct: 257 NGANV--------NQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIA 308
Query: 435 CSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLH 470
DIV L+ + E + +
Sbjct: 309 METANADIVTLLRLAKMREAEAAQGQAGDETYLDIF 344
Score = 41.7 bits (97), Expect = 5e-04
Identities = 24/126 (19%), Positives = 38/126 (30%), Gaps = 14/126 (11%)
Query: 8 SDNKNKSRLIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHG 67
+ + + VN L AT N + LLQ ++ G
Sbjct: 211 PSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQAD--SAG 268
Query: 68 RTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKT 127
R LH A I A + + GA L S G P+ A + A++
Sbjct: 269 RGPLHHATILGHTGLACLFLK------------RGADLGARDSEGRDPLTIAMETANADI 316
Query: 128 MEVFLQ 133
+ +
Sbjct: 317 VTLLRL 322
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.0 bits (137), Expect = 2e-08
Identities = 116/680 (17%), Positives = 199/680 (29%), Gaps = 242/680 (35%)
Query: 4 LSVQSDNKNKSRLIPSSSGVNTRILNNKKQAVLHLATE--------LNKVPILLILLQYK 55
L++ + L+P++S L + +L TE ++ L Y
Sbjct: 9 LTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGY- 67
Query: 56 DMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKD---FGASL------- 105
+ +++ + G FD+ + ++E E ++ D A L
Sbjct: 68 -VSSLVEPSKVG----------QFDQVLNLCLTEF-ENCYLEGNDIHALAAKLLQENDTT 115
Query: 106 ----KRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDA--EGNLPLHS 159
K N Y A+ + + + + S +LF A EGN L
Sbjct: 116 LVKTKELIKN-YI----TARIMAKRPFD---KKSNS---------ALFRAVGEGNAQLV- 157
Query: 160 AVHGG-----D-FKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEK 213
A+ GG D F+ EL + + + D+++ +E
Sbjct: 158 AIFGGQGNTDDYFE--EL-----RDL----YQTYHV-LVG------DLIKFS-----AET 194
Query: 214 LVCLNSTDAQKMTPLHCAAMFDR-CDVVQYLIDEGA--DLNVLDKEKRS-PLLLAASRGG 269
L L T L +F + +++++L + D + L S PL+
Sbjct: 195 LSELIR------TTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLI------- 241
Query: 270 WKTNGVNTRILNNKKQAVLHLAT--ELNKVPILLILLQYKDMIDILQGG-EHGR---TAL 323
GV Q ++ T L P ++ L+G H + TA+
Sbjct: 242 ----GVI--------QLAHYVVTAKLLGFTP--------GELRSYLKGATGHSQGLVTAV 281
Query: 324 HIAA---IYDFDECA----RILVKDF--GASLKRACSNGYYPIHDAAKNASSKTMEVFLQ 374
IA F +L F G A YP + ++E
Sbjct: 282 AIAETDSWESFFVSVRKAITVL---FFIGVRCYEA-----YPNTSLPPSILEDSLEN--- 330
Query: 375 FGE-------SI-GCSREEMIS-LFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQF 425
E SI ++E++ + +LP V + L +GA +
Sbjct: 331 -NEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVE--------ISLVNGA----KNL 377
Query: 426 DLSTP--------VHL--ACSQGALDIVRLMFNLQPSE-KLVC----LNSTDAQKMTPLH 470
+S P + L A + LD R+ F SE KL L +P H
Sbjct: 378 VVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPF----SERKLKFSNRFLPVA-----SPFH 428
Query: 471 CAAMFDRCDVVQ-------------------YLIDEGADLNVLDKEKRSPL--LLAASRG 509
+ D++ Y +G+DL VL + +
Sbjct: 429 SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPV 488
Query: 510 GWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVF--LGENLINLGA 567
W+T H+L G G G +I G
Sbjct: 489 KWETTTQF---------------KATHILDF-GPGGASGLGVLTHRNKDGTGVRVIVAGT 532
Query: 568 CINLKNNSNESPLHLAARYG 587
L N ++ YG
Sbjct: 533 ---LDINPDDD-------YG 542
Score = 42.7 bits (100), Expect = 4e-04
Identities = 41/315 (13%), Positives = 79/315 (25%), Gaps = 112/315 (35%)
Query: 305 QYKDMIDILQGGEHGRTALHIA-AIYDFDECARILVKDFGASLKRACSNGYYP----IH- 358
Q + M G A + ++ +G S+ N P IH
Sbjct: 1627 QEQGM------GMDLYKTSKAAQDV--WNRADNHFKDTYGFSILDIVIN--NPVNLTIHF 1676
Query: 359 -----------------DAAKNASSKTMEVFLQFGESI-----GCSREEM---------- 386
+ + KT ++F + E + +
Sbjct: 1677 GGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPAL 1736
Query: 387 ----ISLFA---AEGNLPLHSAVHG---GDFKAVELCLKSGAKISTQQFDLSTPVHL--- 433
+ F ++G +P + G G++ A L + + + V +
Sbjct: 1737 TLMEKAAFEDLKSKGLIPADATFAGHSLGEYAA--LASLADV------MSIESLVEVVFY 1788
Query: 434 -------ACSQGALDIVRL-MFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVV---- 481
A + L M + P + Q + ++V
Sbjct: 1789 RGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNV 1848
Query: 482 ---QYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLL 538
QY+ DL LD +T V L I + I ++
Sbjct: 1849 ENQQYVA--AGDLRALDT------------------VTNV-------LNFIKLQKI-DII 1880
Query: 539 VLNGGGHIKEFAEEV 553
L ++E +
Sbjct: 1881 ELQKSLSLEEVEGHL 1895
Score = 42.3 bits (99), Expect = 5e-04
Identities = 49/315 (15%), Positives = 97/315 (30%), Gaps = 103/315 (32%)
Query: 53 QYKDM-IDILQGGEHGRTAL-----HIAAIYDFDECARIL--VSEQPECDWIMVKDFGAS 104
Q + M +D+ + + + H Y F IL V P I FG
Sbjct: 1627 QEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGF----SILDIVINNPVNLTIH---FGGE 1679
Query: 105 LKRACSNGYYP-IHDAAKNASSKTMEVFLQFGESI-----GCSREEM------------- 145
+ Y I + + KT ++F + E + +
Sbjct: 1680 KGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLM 1739
Query: 146 -ISLFD---AEGNLPLHSAVHG---GDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGA 198
+ F+ ++G +P + G G++ A LA
Sbjct: 1740 EKAAFEDLKSKGLIPADATFAGHSLGEYAA-----------------------LASLADV 1776
Query: 199 L---DIVRLMF-------NLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGA 248
+ +V ++F P ++L N + P AA F + + +QY+++
Sbjct: 1777 MSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMI-AINPGRVAASFSQ-EALQYVVERVG 1834
Query: 249 DLNVLDKEKRSPLLL-AA---SRG------GWKTNGVN--TRILN-NKKQAVLHLATELN 295
KR+ L+ G ++ T +LN K Q + ++
Sbjct: 1835 --------KRTGWLVEIVNYNVENQQYVAAG-DLRALDTVTNVLNFIKLQKI-----DII 1880
Query: 296 KVPILLILLQYKDMI 310
++ L L + + +
Sbjct: 1881 ELQKSLSLEEVEGHL 1895
Score = 40.4 bits (94), Expect = 0.002
Identities = 42/255 (16%), Positives = 81/255 (31%), Gaps = 74/255 (29%)
Query: 412 LCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNL---QPSEKLVCLNSTDAQKMTP 468
L L G+ + + T SQ ++ FN +P+E + D + TP
Sbjct: 9 LTLSHGS-LEHV-LLVPTASFFIASQ-----LQEQFNKILPEPTEGF----AADDEPTTP 57
Query: 469 LHCAAMF--------------DRCDVVQYLIDE-------GADLNVLDKEKRSPLLLAAS 507
F V+ + E G D++ L + LL +
Sbjct: 58 AELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAK-----LLQEN 112
Query: 508 RGGWKTVLTLVRN--KANILLKD-INRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLIN 564
L++N A I+ K ++++ L G G+ + + A+F G+
Sbjct: 113 DTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQ-----LVAIFGGQ---- 163
Query: 565 LGACINLKNNSNESPLH-LAARYGRYNT-VKKLLSSERGSFIINESDGEGLTPLHIASKE 622
G + + L Y Y+ V L+ + L + +++
Sbjct: 164 -G--------NTDDYFEELRDLYQTYHVLVGDLIKFSAETL-------SELIRTTLDAEK 207
Query: 623 GFHYSVSIFQVTYVW 637
F ++I + W
Sbjct: 208 VFTQGLNILE----W 218
Score = 37.3 bits (86), Expect = 0.020
Identities = 52/293 (17%), Positives = 82/293 (27%), Gaps = 105/293 (35%)
Query: 199 LDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCD---VVQYLIDEGADLNVLDK 255
LDIV N P + +++ + A +F+ + I + + +
Sbjct: 1662 LDIVI---N-NPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSY 1717
Query: 256 EKRSP--LLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMID-- 311
RS LL A T T Q L E L+ K +I
Sbjct: 1718 TFRSEKGLLSA-------TQ--FT-------QPAL-TLMEK----AAFEDLKSKGLIPAD 1756
Query: 312 -ILQG---GEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAK--NAS 365
G GE+ AL A I +
Sbjct: 1757 ATFAGHSLGEY--AAL-------------------------ASLADVMSIESLVEVVFYR 1789
Query: 366 SKTMEVFLQFGESIGCSREEMISL--------FAAEG---------------------NL 396
TM+V + E +G S MI++ F+ E N+
Sbjct: 1790 GMTMQVAVPRDE-LGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNV 1848
Query: 397 PLHSAVHGGDFKAVEL---CLKSGAKISTQQFDLSTPVHLACSQGALDIVRLM 446
V GD +A++ L I Q+ D+ + L S +L+ V
Sbjct: 1849 ENQQYVAAGDLRALDTVTNVLN---FIKLQKIDI---IELQKSL-SLEEVEGH 1894
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.0 bits (121), Expect = 1e-06
Identities = 66/585 (11%), Positives = 162/585 (27%), Gaps = 157/585 (26%)
Query: 38 LATELNKVPI--LLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDW 95
L + + ++ Y + D L +++ + + + + L+ +P
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA-KN 152
Query: 96 IMV---KDFGAS-L-KRACSNGYYPIHDAAKNASSKTMEVF-LQFGESIGCSREEMISLF 149
+++ G + + C + Y + ++F L C+ E ++
Sbjct: 153 VLIDGVLGSGKTWVALDVCLS--YKVQCKMDF------KIFWLNLKN---CNSPE--TVL 199
Query: 150 DAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQ 209
+ L + T + D S+ + L ++ RL+ +
Sbjct: 200 EMLQKL----------------LYQID-PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 210 PSEKLVCL-NSTDAQKMTPLHCAAMFD-RCDVVQYLI---DEGADLNVLDKEKRSPLLLA 264
L+ L N +A+ F+ C + L+ + + L + + L
Sbjct: 243 YENCLLVLLNVQNAK------AWNAFNLSCKI---LLTTRFKQ-VTDFLSAATTTHISLD 292
Query: 265 ASRGGW---KTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRT 321
+ + + L+ + Q + N + +I +D + +H
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH--- 349
Query: 322 ALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAA---KNA--SSKTMEVFLQFG 376
+ D+ I+ + L+ A + + +A + + + +
Sbjct: 350 -------VNCDKLTTII-ESSLNVLEPAEYRKMF--DRLSVFPPSAHIPTILLSLI--WF 397
Query: 377 ESIGCSREEMISLF-----AAEGNLPLHSAVHGGDFKAVELCLKSGA---KISTQ----- 423
+ I +++ + ++ + A I
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK 457
Query: 424 ---QFDLSTPVHLACSQGALD------IVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAM 474
DL P LD I + N++ E++ +
Sbjct: 458 TFDSDDLIPP--------YLDQYFYSHIGHHLKNIEHPERM-----------------TL 492
Query: 475 FDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRN-KANI--------- 524
F +L D L+++ R + G L ++ K I
Sbjct: 493 FRMV----FL-----DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER 543
Query: 525 LLKDINR--------------RNILHLLVLNGGGHIKEFAEEVAA 555
L+ I ++L + ++ I E A +
Sbjct: 544 LVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588
Score = 31.4 bits (70), Expect = 1.3
Identities = 50/384 (13%), Positives = 98/384 (25%), Gaps = 150/384 (39%)
Query: 26 RILNNKKQAVLHLATELNKVPILLILLQYKDM----------------------IDILQG 63
+ L+ + Q + N + +I +D +++L+
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 64 GEHGRTALHIAAIYDFDECARI----LV-----SEQPECDWIMVKDFGASL--KRACSNG 112
E+ R ++ F A I L + + ++ K SL K+ +
Sbjct: 369 AEY-RKMFDRLSV--FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425
Query: 113 YYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELC 172
I + + E + LH V+
Sbjct: 426 IS-IPS-------------IYL--ELKVKLENEYA---------LHR-------SIVD-- 451
Query: 173 LKSGAKISTQQFDLSTPVHLACSQGALD------IVRLMFNLQPSEKLVCLNSTDAQKMT 226
+ DL P LD I + N++ E++
Sbjct: 452 -HYNIPKTFDSDDLIPP--------YLDQYFYSHIGHHLKNIEHPERM------------ 490
Query: 227 PLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQA 286
+F +L D L+++ R + N +
Sbjct: 491 -----TLFRMV----FL-----DFRFLEQKIR-----------------HDSTAWNASGS 519
Query: 287 VLHLATELNKVPILLILLQYKDMI-DILQGGEHGRTALHIAAIYDF-DECARILVK-DFG 343
+L+ +L YK I D + + AI DF + L+ +
Sbjct: 520 ILNTLQQLKF---------YKPYICD-----NDPKYERLVNAILDFLPKIEENLICSKYT 565
Query: 344 ASLKRACSN---GYYPIHDAAKNA 364
L+ A + +A K
Sbjct: 566 DLLRIALMAEDEAIF--EEAHKQV 587
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.2 bits (77), Expect = 0.052
Identities = 12/36 (33%), Positives = 14/36 (38%), Gaps = 14/36 (38%)
Query: 98 VKDFGASLKRACSNGYYPIHDAAK----NASSKTME 129
+K ASLK Y D+A A TME
Sbjct: 22 LKKLQASLKL-----YAD--DSAPALAIKA---TME 47
Score = 34.2 bits (77), Expect = 0.052
Identities = 12/36 (33%), Positives = 14/36 (38%), Gaps = 14/36 (38%)
Query: 339 VKDFGASLKRACSNGYYPIHDAAK----NASSKTME 370
+K ASLK Y D+A A TME
Sbjct: 22 LKKLQASLKL-----YAD--DSAPALAIKA---TME 47
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein;
HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP:
a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Length = 509
Score = 33.3 bits (77), Expect = 0.26
Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 32 KQAVLHLATELNKVPILLILLQYKDMIDILQG--GEHGRTALHIAAIYDFDECAR 84
K ++ L + L + LI + D + L G + + +YD R
Sbjct: 64 KNSLAQLDSSLRSLGTCLITKRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVR 118
Score = 33.3 bits (77), Expect = 0.26
Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 284 KQAVLHLATELNKVPILLILLQYKDMIDILQG--GEHGRTALHIAAIYDFDECAR 336
K ++ L + L + LI + D + L G + + +YD R
Sbjct: 64 KNSLAQLDSSLRSLGTCLITKRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVR 118
>1rre_A ATP-dependent protease LA; catalytic Ser-Lys DYAD, hydrolase; HET:
MSE; 1.75A {Escherichia coli} SCOP: d.14.1.10 PDB:
1rr9_A*
Length = 200
Score = 31.4 bits (72), Expect = 0.56
Identities = 18/34 (52%), Positives = 21/34 (61%), Gaps = 6/34 (17%)
Query: 496 KEKRSPLLLAASRGGWKTVLTLVRNKANILLKDI 529
KEK LLAA RGG KTVL NK + L++I
Sbjct: 136 KEK----LLAAHRGGIKTVLIPFENKRD--LEEI 163
>1xhk_A Putative protease LA homolog; LON protease, ATP dependent,
catalytic DYAD, hydrolase; HET: MES; 1.90A
{Methanocaldococcus jannaschii} SCOP: d.14.1.10
Length = 187
Score = 31.4 bits (72), Expect = 0.58
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 6/39 (15%)
Query: 496 KEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNI 534
EK + AA R G+K V+ N + + + I
Sbjct: 138 NEK----IEAAKRYGFKRVIIPEANMID--VIETEGIEI 170
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase,
nucleotide-binding, Pro serine protease, stress
response; HET: ADP; 3.40A {Bacillus subtilis} PDB:
1x37_A
Length = 543
Score = 30.9 bits (71), Expect = 1.4
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 6/34 (17%)
Query: 496 KEKRSPLLLAASRGGWKTVLTLVRNKANILLKDI 529
KEK L A R G T++ N+ + ++DI
Sbjct: 479 KEK----ALGAHRAGLTTIIAPKDNEKD--IEDI 506
>1z0w_A Putative protease LA homolog type; ATP-dependent protease,
catalytic Ser-Lys DYAD, B-type LON, hydrolase; 1.20A
{Archaeoglobus fulgidus} PDB: 1z0b_A 1z0c_A 1z0e_A
1z0g_A 1z0t_A 1z0v_A
Length = 207
Score = 29.9 bits (68), Expect = 2.0
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 496 KEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNI 534
+K + AA + G K V+ N ++LL + I
Sbjct: 136 TQK----IEAAIQAGLKKVIIPKDNIDDVLLDAEHEGKI 170
>2x36_A LON protease homolog, mitochondrial; hydrolase, catalytic DYAD,
transit peptide; 2.00A {Homo sapiens}
Length = 207
Score = 28.3 bits (64), Expect = 6.0
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 6/34 (17%)
Query: 496 KEKRSPLLLAASRGGWKTVLTLVRNKANILLKDI 529
KEK +AA R G ++ NK + D+
Sbjct: 144 KEK----TIAAKRAGVTCIVLPAENKKD--FYDL 171
>3hdp_A Glyoxalase-I; glutathione,lyase, methylglyoxal,11003P,PSI2,
structural GENOMIC,NYSGXRC., structural genomics; 2.06A
{Clostridium acetobutylicum} PDB: 2qh0_A
Length = 133
Score = 27.8 bits (62), Expect = 6.1
Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 6/90 (6%)
Query: 96 IMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESI-----GCSREEMISLFD 150
VK+ ++LK+ GY + ++ K F+ G + I+
Sbjct: 13 YAVKNIDSALKKFKRLGYVEESEVVRDEVRKVYIQFVINGGYRVELVAPDGEDSPINKTI 72
Query: 151 AEGNLPLHSAVHGGDF-KAVELCLKSGAKI 179
+G+ P H D K++E + G +
Sbjct: 73 KKGSTPYHICYEVEDIQKSIEEMSQIGYTL 102
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.399
Gapped
Lambda K H
0.267 0.0902 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,405,863
Number of extensions: 574325
Number of successful extensions: 4782
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1703
Number of HSP's successfully gapped: 563
Length of query: 641
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 541
Effective length of database: 3,909,693
Effective search space: 2115143913
Effective search space used: 2115143913
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.6 bits)