RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8764
(420 letters)
>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate
protein-protein interactions in very diverse families of
proteins. The number of ANK repeats in a protein can
range from 2 to over 20 (ankyrins, for example). ANK
repeats may occur in combinations with other types of
domains. The structural repeat unit contains two
antiparallel helices and a beta-hairpin, repeats are
stacked in a superhelical arrangement; this alignment
contains 4 consecutive repeats.
Length = 126
Score = 41.2 bits (97), Expect = 1e-04
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 19 LDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAA 74
++ DKDGNT LHLA + LLL + + + + A E
Sbjct: 66 VNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVV 122
Score = 37.4 bits (87), Expect = 0.003
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Query: 15 HSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEA 73
+ ++ D DG T LHLA + + LLL + + + + A +
Sbjct: 29 NGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDV 88
Query: 74 A 74
Sbjct: 89 V 89
Score = 37.4 bits (87), Expect = 0.003
Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLSLNCKLLYNCMD-LSAIDYAIYYKFPEAALAMV 78
+ D+DG T LHLA + + LLL + D + + A E ++
Sbjct: 1 NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60
Query: 79 THN 81
Sbjct: 61 EKG 63
Score = 29.7 bits (67), Expect = 1.4
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 1 MSGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLL 46
+G + + L H ++ DKDG T LHLA + + LLL
Sbjct: 82 RNGNLDVVKLLLK-HGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126
>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to
24 repeated units, and it mediates most of the
protein's binding activities. Repeats 13-24 are
especially active, with known sites of interaction for
the Na/K ATPase, Cl/HCO(3) anion exchanger,
voltage-gated sodium channel, clathrin heavy chain and
L1 family cell adhesion molecules. The ANK repeats are
found to form a contiguous spiral stack such that ion
transporters like the anion exchanger associate in a
large central cavity formed by the ANK repeat spiral,
while clathrin and cell adhesion molecules associate
with specific regions outside this cavity.
Length = 33
Score = 32.1 bits (74), Expect = 0.025
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 25 DGNTALHLATMENKPKAICLLLSLNCKL 52
DGNT LHLA + + LLL +
Sbjct: 1 DGNTPLHLAARNGHLEVVKLLLEAGADV 28
>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies).
Length = 91
Score = 33.8 bits (78), Expect = 0.026
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 19 LDQVDKDGNTALHLATMENKPKAICLLLSLNCKLLYN 55
++ DKDGNTALHLA + + LLL +
Sbjct: 54 VNAKDKDGNTALHLAARNGNLEIVKLLLEHGADINLK 90
Score = 30.7 bits (70), Expect = 0.33
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 27 NTALHLATMENKPKAICLLLSLNCKLLYNCMD-LSAIDYAIYYKFPEAALAMVTHN 81
+TALHLA + + LLL + D +A+ A E ++ H
Sbjct: 29 DTALHLAARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHG 84
>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies).
Length = 56
Score = 30.8 bits (70), Expect = 0.14
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 18 LLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYA 65
L+ D +GNT LHLA + + LL L L + L+A+D A
Sbjct: 8 DLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to
24 repeated units, and it mediates most of the
protein's binding activities.
Length = 30
Score = 29.5 bits (67), Expect = 0.21
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 25 DGNTALHLATMENKPKAICLLLSLNCKL 52
DGNT LHLA + + LLL +
Sbjct: 1 DGNTPLHLAARNGNLELVKLLLEHGADI 28
>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies).
Length = 54
Score = 28.7 bits (65), Expect = 0.59
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 15 HSHLLDQVDKDGNTALHLATMENKPKAICLLL 46
+++ D+DGNTALH+A + + LLL
Sbjct: 23 KGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 25.7 bits (57), Expect = 9.8
Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 26 GNTALHLATMENKPKAICLLLSLNCKLLY-NCMDLSAIDYAIYYKFPEAA 74
G TALH A + + + + LL + + +A+ A E
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVL 50
>gnl|CDD|197603 smart00248, ANK, ankyrin repeats. Ankyrin repeats are about 33
amino acids long and occur in at least four consecutive
copies. They are involved in protein-protein
interactions. The core of the repeat seems to be an
helix-loop-helix structure.
Length = 30
Score = 26.4 bits (59), Expect = 2.9
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 25 DGNTALHLATMENKPKAICLLLSLNCKL 52
DG T LHLA + + LLL +
Sbjct: 1 DGRTPLHLAAENGNLEVVKLLLDKGADI 28
>gnl|CDD|170188 PRK09973, PRK09973, putative outer membrane lipoprotein;
Provisional.
Length = 85
Score = 27.7 bits (61), Expect = 3.4
Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 7/44 (15%)
Query: 104 ASMPRVFESVQDKSITKANCKKDSKSFYIKYNFSCLQCLRIYPE 147
A P+++ + + + +AN + D++ + F CL+CLR+Y E
Sbjct: 49 ALRPQIYAAKSEAN--RANTRLDAQDY-----FDCLRCLRMYAE 85
>gnl|CDD|227086 COG4743, COG4743, Predicted membrane protein [Function unknown].
Length = 316
Score = 29.1 bits (65), Expect = 4.6
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 369 NIVALLLFFSATIMIVPLFTKGRYMTDYQISFTSLTVFLSWLTLLL 414
N+ L L F +I IVPL TD+ I + V LS +L++
Sbjct: 88 NLERLALSFGLSIAIVPLIGLLMNYTDWGIRLIPILVSLSAFSLIM 133
>gnl|CDD|219007 pfam06395, CDC24, CDC24 Calponin. Is a calponin homology domain.
Length = 89
Score = 26.9 bits (60), Expect = 7.7
Identities = 13/47 (27%), Positives = 20/47 (42%)
Query: 205 PTPTLFLQVLLHTELERNLPKFLLEKVDKMEIYEYPNECKGKLGFLD 251
P LF + L + K+ K +Y++ CK +LGF D
Sbjct: 15 PLCALFNALQPEEPLPVDTVSSDDAKICKKSVYDFLLACKSELGFPD 61
>gnl|CDD|224098 COG1177, PotC, ABC-type spermidine/putrescine transport system,
permease component II [Amino acid transport and
metabolism].
Length = 267
Score = 27.9 bits (63), Expect = 8.7
Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 7/64 (10%)
Query: 359 QKWHYLFDPTNIVALLLFFSATIMIVPL--FTKGRYMTDYQISFTSLTVFLSWLTLLLNL 416
+ W +F + +LLF ++++ L F R + F+ L W L +
Sbjct: 6 RIWARIFLKLYLALVLLFLYLPLLVLVLYSFNSSRLGLVFPPGFS-----LKWYGALFSD 60
Query: 417 QSLL 420
LL
Sbjct: 61 PRLL 64
>gnl|CDD|218264 pfam04786, Baculo_DNA_bind, ssDNA binding protein. Family of
Baculovirus ssDNA binding proteins.
Length = 248
Score = 28.0 bits (63), Expect = 9.5
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 8/46 (17%)
Query: 259 CNPFTEDAIDMVLESNGNDVFTDE--------IDKLKRKLNEIQIH 296
C P T D D V E +D +DE I+ +K+ NEI++
Sbjct: 178 CEPMTVDRFDEVFEFEEDDGPSDEVEMLMGAVIEGVKQGKNEIEME 223
>gnl|CDD|235422 PRK05342, clpX, ATP-dependent protease ATP-binding subunit ClpX;
Provisional.
Length = 412
Score = 28.2 bits (64), Expect = 9.6
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 278 VFTDEIDKLKRK 289
V+ DEIDK+ RK
Sbjct: 177 VYIDEIDKIARK 188
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.137 0.414
Gapped
Lambda K H
0.267 0.0705 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,843,176
Number of extensions: 1995895
Number of successful extensions: 2471
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2465
Number of HSP's successfully gapped: 38
Length of query: 420
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 321
Effective length of database: 6,546,556
Effective search space: 2101444476
Effective search space used: 2101444476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (26.9 bits)