RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8764
(420 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.1 bits (116), Expect = 2e-06
Identities = 66/448 (14%), Positives = 138/448 (30%), Gaps = 136/448 (30%)
Query: 3 GYTNT----MVHLNSVHSHL----LDQVDKDGNTALHLAT--------MENKPKAICLL- 45
N+ + L + + + D N L + + +++KP CLL
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249
Query: 46 ------------LSLNCKLLYNCMDLSAIDYAIYYKFPEAALAMVTHNTRGTEIMSL--- 90
+L+CK+L D+ +L + E+ SL
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 91 ----RSDKHP---CVTLALVASMPRVFESVQDKSIT-----KANCKKDSKSFYIKYNFSC 138
R P T S+ + ES++D T NC K + I+ S
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSI--IAESIRDGLATWDNWKHVNCDKLTTI--IE---SS 362
Query: 139 LQCLRIYPEINEKTGDATAI---SKPIPLPAL-----NNTALHLATISHHFYRPTFLDRN 190
L L P K D ++ S IP L + + + + ++ + +++
Sbjct: 363 LNVL--EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420
Query: 191 ---LALFFHNCVFVGSNPTPTLFLQVLLHTELERNLPKFLLEKVDKMEIYEYPNECKGKL 247
+ + ++L++ + E E L + +++ Y P
Sbjct: 421 PKESTISIPS-----------IYLELKVKLENEYALHRSIVDH------YNIP------- 456
Query: 248 GFLDLVIRKWFCNPFTEDAIDMV--------LESNGNDVFTDEIDKLKRKLNEIQIHLDH 299
+ + + +D L++ + + + + + LD
Sbjct: 457 -------KTFDSDDLIPPYLDQYFYSHIGHHLKNIEH---PERMTLFRM------VFLD- 499
Query: 300 QFMFLRLIVHKMDIKTETDERDEGTSSNKELHPLL----YICGTA------ISTYMLFSV 349
F FL K I+ ++ + S L L YIC ++ + F
Sbjct: 500 -FRFLE---QK--IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLP 553
Query: 350 AVQSVQIYQQKWHYLFDPTNIVALLLFF 377
++ + K+ T+++ + L
Sbjct: 554 KIEE-NLICSKY------TDLLRIALMA 574
Score = 39.1 bits (90), Expect = 0.003
Identities = 33/280 (11%), Positives = 73/280 (26%), Gaps = 99/280 (35%)
Query: 222 NLPKFLLEKVDKMEIYEYPNECKGKLGFLDLVIRK------------------WFCNPFT 263
++PK +L K + I + G L ++ K + +P
Sbjct: 40 DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK 99
Query: 264 EDAIDMVLES-----------NGNDVFT-------DEIDKLKRKLNEIQIHLDHQFMFLR 305
+ + + N N VF KL++ L E++ +
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR---PAKN---- 152
Query: 306 LIVHKM--------------DIKTETDERDEG---------TSSNKELHPLLYICGTAIS 342
+++ + K + + D S L L +
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQ-CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211
Query: 343 TYM-----LFSVAVQSVQIYQQKWHYLFDPTNIVALLL------------F-FSATIMI- 383
+ ++ ++ I + L LL+ F S I++
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT 271
Query: 384 ----------VPLFTKGRYMTDYQISFT---SLTVFLSWL 410
T + + ++ T ++ L +L
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311
Score = 34.1 bits (77), Expect = 0.093
Identities = 30/239 (12%), Positives = 70/239 (29%), Gaps = 50/239 (20%)
Query: 188 DRNLALFFHNCVF---VGSNPTPTLFLQVLLHTELERNLPKFLLEKVDKMEIYEYP-NEC 243
+ +F + + +P L++L +L + + D + +
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ--KLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 244 KGKLGFLDLVIRKWF----------CNPFTEDAIDM---VLESNGNDVFTDEIDKLKRK- 289
+ +L L+ K + N +A ++ +L + TD +
Sbjct: 231 QAEL--RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH 288
Query: 290 --LNEIQIHLDHQFMFLRLIVHKMDIKTETDERDEGTSSNKELHPLLYICGTAISTYMLF 347
L+ + L + L++ +D + + D E +P
Sbjct: 289 ISLDHHSMTLTPDEV-KSLLLKYLDCRPQ-DLPREV----LTTNPRR------------L 330
Query: 348 SVAVQSVQIYQQKWHYLFDPTNIVALLLFFSATIMIVPLFTKGRYMTDYQISFTSLTVF 406
S+ +S++ W + I+ +Y+ F L+VF
Sbjct: 331 SIIAESIRDGLATWDNW--------KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 44.2 bits (104), Expect = 4e-05
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 19 LDQVDKDGNTALHLATMENKPKAICLLLSLNCKLLYNCMD---LSAIDYAI 66
LD DGNTALH A + N+P + LLL ++ +A+D A
Sbjct: 219 LDAKAADGNTALHYAALYNQPDCLKLLLKGRAL--VGTVNEAGETALDIAR 267
Score = 27.6 bits (61), Expect = 6.7
Identities = 11/55 (20%), Positives = 17/55 (30%), Gaps = 6/55 (10%)
Query: 25 DGNTALHLATMENKPK--AICLLLSLNCKLLYNCMDL---SAIDYAIYYKFPEAA 74
LHLA + + N L + +A+ YA Y P+
Sbjct: 189 PEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNTALHYAALYNQPDCL 242
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 41.5 bits (97), Expect = 3e-04
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 8 MVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAI 66
+V +S LD+ G+TALH + + + + LLL + + N + +D A
Sbjct: 187 IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAK 246
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 41.0 bits (96), Expect = 6e-04
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 19 LDQVDKDGNTALHLATMENKPKAICLLLSLNCKL 52
LD DGNTALH A + N+P + LLL +
Sbjct: 200 LDAKAADGNTALHYAALYNQPDCLKLLLKGRALV 233
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 40.4 bits (94), Expect = 8e-04
Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 8 MVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAI 66
+ L + +++L+ D +G+T L++A + LL + N L +D+
Sbjct: 265 NLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324
Score = 34.2 bits (78), Expect = 0.065
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 21 QVDKDGNTALHLATMENKPKAICLLLSLNC 50
VD+ GNT LH T + + L+
Sbjct: 126 PVDEHGNTPLHWLTSIANLELVKHLVKHGS 155
Score = 29.6 bits (66), Expect = 1.9
Identities = 9/77 (11%), Positives = 17/77 (22%)
Query: 19 LDQVDKDGNTALHLATMENKPKAICLLLSLNCKLLYNCMDLSAIDYAIYYKFPEAALAMV 78
L D T LH + + +L + + +
Sbjct: 194 LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPND 253
Query: 79 THNTRGTEIMSLRSDKH 95
+ R I+ K
Sbjct: 254 KNGERKDSILENLDLKW 270
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 39.4 bits (91), Expect = 0.001
Identities = 12/60 (20%), Positives = 19/60 (31%), Gaps = 1/60 (1%)
Query: 8 MVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAI 66
+ ++Q D G LH AT+ CL L L + + A+
Sbjct: 250 ACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAM 309
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 37.8 bits (89), Expect = 0.004
Identities = 12/59 (20%), Positives = 18/59 (30%), Gaps = 7/59 (11%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS----LNCKLLYNCMDLSAIDYAIYYKFPEAA 74
D + T L LA E + +LL + + MD D A +
Sbjct: 184 DMQNNREETPLFLAAREGSYETAKVLLDHFANRDIT---DHMDRLPRDIAQERMHHDIV 239
Score = 34.4 bits (80), Expect = 0.052
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 18 LLDQVDKDGNTALHLATMENKPKAICLLLS 47
L +Q D+ G TALHLA ++ A LL
Sbjct: 49 LHNQTDRTGETALHLAARYSRSDAAKRLLE 78
Score = 34.0 bits (79), Expect = 0.065
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
D G +ALH A N A +LL
Sbjct: 154 DDLGKSALHWAAAVNNVDAAVVLLK 178
Score = 33.6 bits (78), Expect = 0.082
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 19 LDQVDKDGNTALHLATMENKPKAICLLLS 47
LD DG T L LA + L++
Sbjct: 117 LDARMHDGTTPLILAARLAVEGMLEDLIN 145
Score = 31.7 bits (73), Expect = 0.41
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
D G T LH A + +L+
Sbjct: 87 DNMGRTPLHAAVSADAQGVFQILIR 111
Score = 31.3 bits (72), Expect = 0.42
Identities = 4/25 (16%), Positives = 6/25 (24%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
D +A + LL
Sbjct: 220 DHMDRLPRDIAQERMHHDIVRLLDL 244
Score = 28.2 bits (64), Expect = 4.3
Identities = 5/36 (13%), Positives = 7/36 (19%), Gaps = 5/36 (13%)
Query: 23 DKDGNTALHLATMENKPKAICLLLSLN-----CKLL 53
DG T L +A+
Sbjct: 7 GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDF 42
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 37.0 bits (87), Expect = 0.006
Identities = 12/59 (20%), Positives = 18/59 (30%), Gaps = 7/59 (11%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS----LNCKLLYNCMDLSAIDYAIYYKFPEAA 74
D + T L LA E + +LL + + MD D A +
Sbjct: 152 DMQNNREETPLFLAAREGSYETAKVLLDHFANRDIT---DHMDRLPRDIAQERMHHDIV 207
Score = 33.9 bits (79), Expect = 0.055
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
+Q D+ G TALHLA ++ A LL
Sbjct: 19 NQTDRTGETALHLAARYSRSDAAKRLLE 46
Score = 33.2 bits (77), Expect = 0.092
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 19 LDQVDKDGNTALHLATMENKPKAICLLLS 47
LD DG T L LA + L++
Sbjct: 85 LDARMHDGTTPLILAARLAVEGMLEDLIN 113
Score = 33.2 bits (77), Expect = 0.12
Identities = 4/25 (16%), Positives = 6/25 (24%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
D +A + LL
Sbjct: 188 DHMDRLPRDIAQERMHHDIVRLLDE 212
Score = 32.8 bits (76), Expect = 0.13
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
D G +ALH A N A +LL
Sbjct: 122 DDLGKSALHWAAAVNNVDAAVVLLK 146
Score = 32.4 bits (75), Expect = 0.20
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
D G T LH A + +L+
Sbjct: 55 DNMGRTPLHAAVSADAQGVFQILIR 79
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 36.7 bits (86), Expect = 0.008
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 18 LLDQVDKDGNTALHLATMENKPKAICLLLSL 48
+ + D+DG+T LH+A ++ A+ L++L
Sbjct: 1 MATRADEDGDTPLHIAVVQGNLPAVHRLVNL 31
Score = 34.4 bits (80), Expect = 0.049
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 19 LDQVDKDGNTALHLATMENKPKAICLLLS 47
L+ + DG TALH+A + + LLL
Sbjct: 109 LEARNYDGLTALHVAVNTECQETVQLLLE 137
Score = 32.4 bits (75), Expect = 0.17
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
G++ALH A+ + L+
Sbjct: 180 MYSGSSALHSASGRGLLPLVRTLVR 204
Score = 32.4 bits (75), Expect = 0.20
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
D+ G TA HLA P + LL
Sbjct: 76 DRHGQTAAHLACEHRSPTCLRALLD 100
Score = 32.4 bits (75), Expect = 0.22
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 19 LDQVDKDGNTALHLATMENKPKAICLLLS 47
LD + T LHLA + P + LL++
Sbjct: 39 LDIYNNLRQTPLHLAVITTLPSVVRLLVT 67
Score = 31.7 bits (73), Expect = 0.32
Identities = 3/28 (10%), Positives = 8/28 (28%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
+ +T L +A + +
Sbjct: 210 SLKNCHNDTPLMVARSRRVIDILRGKAT 237
Score = 29.7 bits (68), Expect = 1.5
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 24 KDGNTALHLATMENKPKAICLLLS 47
K G + L A N + LLL
Sbjct: 148 KSGRSPLIHAVENNSLSMVQLLLQ 171
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 36.8 bits (86), Expect = 0.009
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 12 NSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLS 47
+L + +G+T LHLA++ + LL+S
Sbjct: 103 TPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVS 138
Score = 35.2 bits (82), Expect = 0.027
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
+ D GNT LHLA + ++ +L
Sbjct: 72 ELRDFRGNTPLHLACEQGCLASVGVLTQ 99
Score = 34.8 bits (81), Expect = 0.030
Identities = 4/28 (14%), Positives = 8/28 (28%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
++V G + L + L
Sbjct: 178 NRVTYQGYSPYQLTWGRPSTRIQQQLGQ 205
Score = 34.4 bits (80), Expect = 0.045
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 19 LDQVDKDGNTALHLATMENKPKAICLLLS 47
L+ + T LHLA + N+P+ LL
Sbjct: 38 LNFQNNLQQTPLHLAVITNQPEIAEALLG 66
Score = 32.5 bits (75), Expect = 0.17
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
+G TALHLA P + LLL
Sbjct: 148 PCNGRTALHLAVDLQNPDLVSLLLK 172
Score = 32.1 bits (74), Expect = 0.23
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 21 QVDKDGNTALHLATMENKPKA----ICLLLS 47
Q+ +DG++ LHLA + + I +
Sbjct: 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKG 33
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 36.8 bits (86), Expect = 0.009
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 18 LLDQVDKDGNTALHLATMENKPKAICLLLS 47
+ V +DG+TALHLA + + LL
Sbjct: 1 VFGYVTEDGDTALHLAVIHQHEPFLDFLLG 30
Score = 34.4 bits (80), Expect = 0.054
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 19 LDQVDKDGNTALHLATMENKPKAICLLLS 47
L+ + DG+T LH+A + + + LL
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRD 179
Score = 34.4 bits (80), Expect = 0.055
Identities = 7/28 (25%), Positives = 9/28 (32%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
G T L A + P LL +
Sbjct: 219 TARMYGGRTPLGSALLRPNPILARLLRA 246
Score = 34.1 bits (79), Expect = 0.064
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
++ G+TALHLA C+LL
Sbjct: 72 LVAERGGHTALHLACRVRAHTCACVLLQ 99
Score = 33.7 bits (78), Expect = 0.092
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 19 LDQVDKDGNTALHLATMENKPKAICLLLS 47
LD + G TALHLA + + + L +
Sbjct: 38 LDLQNDLGQTALHLAAILGEASTVEKLYA 66
Score = 30.2 bits (69), Expect = 1.1
Identities = 1/19 (5%), Positives = 6/19 (31%)
Query: 19 LDQVDKDGNTALHLATMEN 37
+ D + + ++
Sbjct: 251 EPEDGGDKLSPCSSSGSDS 269
Score = 29.1 bits (66), Expect = 2.9
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 19 LDQVDKD-GNTALHLATMENKPKAICLLLS 47
L++ + G T LHLA + LLL
Sbjct: 184 LNKPEPTCGRTPLHLAVEAQAASVLELLLK 213
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 34.3 bits (80), Expect = 0.019
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 23 DKDGNTALHLATMENKPKAICLLLSLN 49
DK G TA ++ +L LN
Sbjct: 110 DKFGKTAFDISIGNGNEDLAEILQKLN 136
Score = 32.4 bits (75), Expect = 0.089
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
D G T LHLA + +LL
Sbjct: 77 DAIGFTPLHLAAFIGHLEIAEVLLK 101
Score = 32.4 bits (75), Expect = 0.092
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
D+ G T L+LAT + + +LL
Sbjct: 44 DEYGLTPLYLATAHGHLEIVEVLLK 68
Score = 28.5 bits (65), Expect = 1.8
Identities = 6/32 (18%), Positives = 11/32 (34%)
Query: 16 SHLLDQVDKDGNTALHLATMENKPKAICLLLS 47
SH D L A + + +L++
Sbjct: 4 SHHHHHHGSDLGKKLLEAARAGQDDEVRILMA 35
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.2 bits (83), Expect = 0.023
Identities = 32/167 (19%), Positives = 52/167 (31%), Gaps = 59/167 (35%)
Query: 57 MDLSAIDYAIYYKFPEAALAMVTHNTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDK 116
MDL Y A ++ + R+D H T S+ D
Sbjct: 1633 MDL-------YKTSKAAQ-----------DVWN-RADNHFKDTYGF---------SILD- 1663
Query: 117 SITKANCKKDSKSF------YIKYNFS----------CLQCLRIYPEINEKTGDATAISK 160
I N + F I+ N+S L+ +I+ EINE + T+ +
Sbjct: 1664 -IVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHS---TSYTF 1719
Query: 161 PIPLPALNNT-----ALHLATISHHFYRPTFLDRNLALFFHNCVFVG 202
L+ T A L + + L ++ L + F G
Sbjct: 1720 RSEKGLLSATQFTQPA--LTLMEKAAFE--DL-KSKGLIPADATFAG 1761
Score = 34.6 bits (79), Expect = 0.063
Identities = 53/387 (13%), Positives = 107/387 (27%), Gaps = 129/387 (33%)
Query: 58 DLSAIDYAIYYKFPEAALAMVT---------------HNTRGTEIMS-LR--SDKHPCVT 99
+L + Y Y+ + T+G I+ L S+
Sbjct: 172 ELRDL-YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY 230
Query: 100 LALVA-SMPRVFESVQDKSITKANCKKDSKSFYIKYNFSCLQCLRIYP-EINEKTGDATA 157
L + S P + + + Y + + L P E+ AT
Sbjct: 231 LLSIPISCPLIG-------VIQLAH----------YVVTA-KLLGFTPGELRSYLKGATG 272
Query: 158 ISKPIP---LPALNNT----------ALHLATI----SHHFYRPTFLDRNLALFFHNCVF 200
S+ + A ++ A+ + + Y T L + +
Sbjct: 273 HSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLP---PSILEDSLE 329
Query: 201 VG-SNPTPTLFLQVLLHTELERNLPKF--LLEKVDKMEIYEYPNECKGKLGF-------- 249
P+P L + L +++ + K L ++EI N G
Sbjct: 330 NNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLV-N---GAKNLVVSGPPQS 385
Query: 250 ---LDLVIRKWFCN--------PFTEDAIDMVLESNGNDVF------------TDEIDKL 286
L+L +RK PF+E + F D +
Sbjct: 386 LYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNR------FLPVASPFHSHLLVPASDLI 439
Query: 287 KRKLNEIQIHLDHQFMFLRLIVHKMDIKTETDERDEGTSSNKELHPLLYICGTAISTYML 346
+ L + + + + +++ V+ D +D R S ++ + +
Sbjct: 440 NKDLVKNNVSFNAK--DIQIPVY--DTFDGSDLRVLSGSISERI------------VDCI 483
Query: 347 FSVAVQSVQIYQQKWHYL--FDPTNIV 371
+ V+ W F T+I+
Sbjct: 484 IRLPVK--------WETTTQFKATHIL 502
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 35.5 bits (82), Expect = 0.024
Identities = 6/31 (19%), Positives = 13/31 (41%)
Query: 17 HLLDQVDKDGNTALHLATMENKPKAICLLLS 47
+L ++ DG + L +A K ++
Sbjct: 216 NLEALLNNDGLSPLMMAAKTGKIGIFQHIIR 246
Score = 30.1 bits (68), Expect = 1.3
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
G TALH+A + LL+
Sbjct: 90 YYRGQTALHIAIERRCKHYVELLVE 114
Score = 28.6 bits (64), Expect = 3.5
Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Query: 23 DKDGNTALHLATM---ENKPKAICLLLSLNCKLLYNCMDLSAIDYAIYYK 69
G T L A + + I +LL + K +++ +YY+
Sbjct: 43 PSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYR 92
Score = 27.8 bits (62), Expect = 6.9
Identities = 7/20 (35%), Positives = 8/20 (40%)
Query: 19 LDQVDKDGNTALHLATMENK 38
L + D GNT LH
Sbjct: 169 LRRQDSRGNTVLHALVAIAD 188
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 35.2 bits (81), Expect = 0.024
Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 7/67 (10%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS----LNCKLLYNCMDLSAIDYAIYYKFPEAAL 75
+ D+D TALH A + + LL +N K + S + A E
Sbjct: 34 TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK---DDAGWSPLHIAASAGXDEIVK 90
Query: 76 AMVTHNT 82
A++
Sbjct: 91 ALLVKGA 97
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 35.6 bits (83), Expect = 0.026
Identities = 3/29 (10%), Positives = 8/29 (27%)
Query: 19 LDQVDKDGNTALHLATMENKPKAICLLLS 47
+ + G + P + L+
Sbjct: 316 VVRSLNTGAGGAVKRKKKAAPAVKRMKLA 344
Score = 34.5 bits (80), Expect = 0.063
Identities = 5/28 (17%), Positives = 9/28 (32%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
+ D + L+L+ LL
Sbjct: 238 NMEDNEHTVPLYLSVRAAMVLLTKELLQ 265
Score = 33.7 bits (78), Expect = 0.089
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 19 LDQVDKDGNTALHLATMENKPKAICLLLS 47
LD +K GN+ LH A + N +
Sbjct: 204 LDYANKQGNSHLHWAILINWEDVAMRFVE 232
Score = 32.5 bits (75), Expect = 0.22
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
G +HLA M NK + L+
Sbjct: 81 LWHGQKPIHLAVMANKTDLVVALVE 105
Score = 32.5 bits (75), Expect = 0.24
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLSLNCK 51
DK T L A +A+ L++
Sbjct: 167 TAKDKADETPLMRAMEFRNREALDLMMDTVPS 198
Score = 32.1 bits (74), Expect = 0.27
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
++ G TALHLA L S
Sbjct: 50 NRFGCTALHLACKFGCVDTAKYLAS 74
Score = 32.1 bits (74), Expect = 0.32
Identities = 4/28 (14%), Positives = 12/28 (42%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
+ D + +H+A + + + L+
Sbjct: 14 IKSDDENMEKIHVAARKGQTDEVRRLIE 41
Score = 29.1 bits (66), Expect = 3.2
Identities = 7/36 (19%), Positives = 11/36 (30%), Gaps = 2/36 (5%)
Query: 14 VHSHLLDQVDKDGNTALHLATMENKP-KAIC-LLLS 47
V+ G TALH + +L+
Sbjct: 126 VNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQ 161
Score = 27.5 bits (62), Expect = 8.6
Identities = 3/20 (15%), Positives = 7/20 (35%)
Query: 18 LLDQVDKDGNTALHLATMEN 37
L++ + G L +
Sbjct: 103 LVEGAKERGQMPESLLNECD 122
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 34.6 bits (80), Expect = 0.026
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 19 LDQVDKDGNTALHLATMENKPKAICLLLS 47
L DK G TAL KP A+ ++
Sbjct: 147 LLIKDKWGLTALEFVKRCQKPIALKMMED 175
Score = 31.2 bits (71), Expect = 0.35
Identities = 5/64 (7%), Positives = 17/64 (26%), Gaps = 8/64 (12%)
Query: 19 LDQVDKDGNTALHLATMENKPKAICLLLSLNCKLLYNCMDL--------SAIDYAIYYKF 70
+ + K + ++ + + L +A+++ +
Sbjct: 107 ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQK 166
Query: 71 PEAA 74
P A
Sbjct: 167 PIAL 170
Score = 29.6 bits (67), Expect = 1.5
Identities = 5/35 (14%), Positives = 8/35 (22%), Gaps = 2/35 (5%)
Query: 19 LDQVDKDGNTALHLATMENKPKAICLLLSLNCKLL 53
+ K+G T CK+
Sbjct: 68 IKSRTKEGTTLFFPLFQGGGNDITGTTEL--CKIF 100
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 35.5 bits (83), Expect = 0.027
Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 7/67 (10%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS----LNCKLLYNCMDLSAIDYAIYYKFPEAAL 75
+ +D T LH A +N+ + LLLS NC SA+D A + E
Sbjct: 118 NAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLV---NCHGKSAVDMAPTPELRERLT 174
Query: 76 AMVTHNT 82
++
Sbjct: 175 YEFKGHS 181
Score = 34.4 bits (80), Expect = 0.057
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
+ +D G TALH A + + LLLS
Sbjct: 274 NALDSLGQTALHRAALAGHLQTCRLLLS 301
Score = 33.6 bits (78), Expect = 0.12
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
+KD T LH+A + +L
Sbjct: 244 NKDFMTPLHVAAERAHNDVMEVLHK 268
Score = 32.5 bits (75), Expect = 0.27
Identities = 9/25 (36%), Positives = 10/25 (40%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
DK G LH A + LLL
Sbjct: 88 DKGGLVPLHNACSYGHYEVTELLLK 112
Score = 32.1 bits (74), Expect = 0.28
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
D +T LHLA N+ + + LLL
Sbjct: 52 HASDGRKSTPLHLAAGYNRVRIVQLLLQ 79
Score = 31.3 bits (72), Expect = 0.60
Identities = 4/32 (12%), Positives = 11/32 (34%)
Query: 23 DKDGNTALHLATMENKPKAICLLLSLNCKLLY 54
+ G +A+ +A + + + L
Sbjct: 154 NCHGKSAVDMAPTPELRERLTYEFKGHSLLQA 185
Score = 29.8 bits (68), Expect = 1.6
Identities = 8/47 (17%), Positives = 14/47 (29%), Gaps = 2/47 (4%)
Query: 4 YTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAIC-LLLSLN 49
+ + + L S + L A + + LL LN
Sbjct: 3 FGKSALDLAD-PSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLN 48
Score = 28.2 bits (64), Expect = 5.8
Identities = 5/28 (17%), Positives = 9/28 (32%), Gaps = 5/28 (17%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
+ G TA + + +LS
Sbjct: 307 SIISLQGFTAAQMGNEAVQ-----QILS 329
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 34.7 bits (81), Expect = 0.028
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
D G TA A + + + I +
Sbjct: 164 DLTGLTAEASARIFGRQEVIKIFTE 188
Score = 33.1 bits (77), Expect = 0.099
Identities = 11/53 (20%), Positives = 16/53 (30%), Gaps = 6/53 (11%)
Query: 1 MSGYTNTMVHLNSVHSH------LLDQVDKDGNTALHLATMENKPKAICLLLS 47
M + + S L + D T L +A M AI L+
Sbjct: 4 MDKNGEIVEKIKDEKSINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVE 56
Score = 32.7 bits (76), Expect = 0.11
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
+ +G T L +A+ + + + LL
Sbjct: 131 NLEGETPLIVASKYGRSEIVKKLLE 155
Score = 32.0 bits (74), Expect = 0.22
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
D +G+TAL A N+ LLS
Sbjct: 65 DIEGSTALIWAVKNNRLGIAEKLLS 89
Score = 30.8 bits (71), Expect = 0.50
Identities = 6/25 (24%), Positives = 9/25 (36%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
D G T L + + + LL
Sbjct: 98 DFSGKTPLMWSIIFGYSEMSYFLLE 122
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 35.2 bits (82), Expect = 0.029
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 7/47 (14%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS----LNCKLLYNCMDLSAIDYA 65
D DG T LH A K +A +L+ + N + +A D A
Sbjct: 229 DYDGWTPLHAAAHWGKEEACRILVENLCDMEAV---NKVGQTAFDVA 272
Score = 32.9 bits (76), Expect = 0.19
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
+ + DG TALH A +++ + L+
Sbjct: 67 NYANVDGLTALHQACIDDNVDMVKFLVE 94
Score = 32.5 bits (75), Expect = 0.24
Identities = 6/29 (20%), Positives = 15/29 (51%)
Query: 19 LDQVDKDGNTALHLATMENKPKAICLLLS 47
+ V+ +G+T L +A E + + ++
Sbjct: 132 VGAVNSEGDTPLDIAEEEAMEELLQNEVN 160
Score = 32.1 bits (74), Expect = 0.30
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
+Q D +G LH A L+S
Sbjct: 100 NQPDNEGWIPLHAAASCGYLDIAEYLIS 127
Score = 31.3 bits (72), Expect = 0.55
Identities = 2/29 (6%), Positives = 5/29 (17%)
Query: 19 LDQVDKDGNTALHLATMENKPKAICLLLS 47
+ D L + +
Sbjct: 1 MKMADAKQKRNEQLKRWIGSETDLEPPVV 29
Score = 30.9 bits (71), Expect = 0.63
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 19 LDQVDKDGNTALHLATMENKPKAICLLLSLN 49
++ V+K G TA +A + L N
Sbjct: 258 MEAVNKVGQTAFDVADEDILGYLEELQKKQN 288
Score = 29.8 bits (68), Expect = 1.5
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
K G TALH+A + + + LL+
Sbjct: 196 AKSGGTALHVAAAKGYTEVLKLLIQ 220
Score = 29.0 bits (66), Expect = 3.1
Identities = 5/30 (16%), Positives = 8/30 (26%)
Query: 18 LLDQVDKDGNTALHLATMENKPKAICLLLS 47
+++ D A A L S
Sbjct: 158 EVNRQGVDIEAARKEEERIMLRDARQWLNS 187
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6,
ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 34.9 bits (81), Expect = 0.029
Identities = 7/30 (23%), Positives = 10/30 (33%)
Query: 18 LLDQVDKDGNTALHLATMENKPKAICLLLS 47
L + G T LA +E L+
Sbjct: 189 LELVPNNQGLTPFKLAGVEGNIVMFQHLMQ 218
Score = 33.7 bits (78), Expect = 0.063
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
Q G TALH+A + + +A +L+
Sbjct: 31 HQRGAMGETALHIAALYDNLEAAMVLME 58
Score = 33.3 bits (77), Expect = 0.086
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 14 VHSHLLDQVDKDGNTALHLATMENKPKAICLLLS 47
+ + +G TALH+A + + LL+
Sbjct: 63 LVFEPMTSELYEGQTALHIAVINQNVNLVRALLA 96
Score = 33.0 bits (76), Expect = 0.12
Identities = 15/63 (23%), Positives = 21/63 (33%), Gaps = 11/63 (17%)
Query: 23 DKDGNTALHLATMENKPKAIC----LLLS----LNCKLLYNCMD---LSAIDYAIYYKFP 71
D GNT LH+ ++ C LLLS + K L + L+ A
Sbjct: 151 DSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNI 210
Query: 72 EAA 74
Sbjct: 211 VMF 213
Score = 28.7 bits (65), Expect = 3.2
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 26 GNTALHLATMENKPKAICLLL 46
+ L LA EN +A+ LL
Sbjct: 3 WESPLLLAAKENDVQALSKLL 23
Score = 28.3 bits (64), Expect = 4.4
Identities = 4/34 (11%), Positives = 9/34 (26%)
Query: 147 EINEKTGDATAISKPIPLPALNNTALHLATISHH 180
++ + + +P L L A
Sbjct: 100 SVSARATGSVFHYRPHNLIYYGEHPLSFAACVGS 133
Score = 28.0 bits (63), Expect = 5.5
Identities = 7/36 (19%), Positives = 12/36 (33%)
Query: 12 NSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLS 47
SV + + G L A + + LL+
Sbjct: 107 GSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIE 142
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 34.4 bits (80), Expect = 0.030
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
+ D+ G TAL LA K +
Sbjct: 137 EVEDERGLTALELAREILKTTPKGNPMQ 164
Score = 33.2 bits (77), Expect = 0.089
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
D VD++G TAL K + LL
Sbjct: 70 DAVDENGRTALLFVAGLGSDKCVRLLAE 97
Score = 31.3 bits (72), Expect = 0.39
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
+ G TALH+A +P+ + L+
Sbjct: 107 MRGGLTALHMAAGYVRPEVVEALVE 131
Score = 30.5 bits (70), Expect = 0.70
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 22 VDKDGNTALHLATMENKPKAICLLLS 47
V + T A + +A+ LL
Sbjct: 40 VVSEYETPWWTAARKADEQALSQLLE 65
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 34.9 bits (81), Expect = 0.031
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS----LNCKLLYNCMDLSAIDYA 65
+ D+ G TAL LA K + + + + N ++ +YA
Sbjct: 138 EVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYA 187
Score = 33.3 bits (77), Expect = 0.10
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
D VD++G TAL K + LL
Sbjct: 71 DAVDENGRTALLFVAGLGSDKCVRLLAE 98
Score = 30.3 bits (69), Expect = 0.96
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
+ G TALH+A +P+ + L+
Sbjct: 108 MRGGLTALHMAAGYVRPEVVEALVE 132
Score = 29.9 bits (68), Expect = 1.5
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 22 VDKDGNTALHLATMENKPKAICLLLS 47
V + T A + +A+ LL
Sbjct: 41 VVSEYETPWWTAARKADEQALSQLLE 66
Score = 27.2 bits (61), Expect = 8.5
Identities = 2/25 (8%), Positives = 6/25 (24%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
G +L ++ +
Sbjct: 196 RGKGKDVEYLVRWKDGGDCEWVKGV 220
Score = 27.2 bits (61), Expect = 9.2
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 16 SHLLDQVDKDGNTALHLATMEN 37
H+ + V KD L A E+
Sbjct: 220 VHVAEDVAKDYEDGLEYAVAES 241
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A {Synthetic
source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D*
3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B*
2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 34.3 bits (80), Expect = 0.031
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 23 DKDGNTALHLATMENKPKAICLLLSLN 49
DK G TA ++ +L LN
Sbjct: 143 DKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 31.6 bits (73), Expect = 0.29
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
D +G+T LHLA M + + +LL
Sbjct: 110 DMEGHTPLHLAAMFGHLEIVEVLLK 134
Score = 31.2 bits (72), Expect = 0.31
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
D G T LHLA + + +LL
Sbjct: 44 DASGWTPLHLAAFNGHLEIVEVLLK 68
Score = 31.2 bits (72), Expect = 0.35
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
+ VD G T L LA + + + +LL
Sbjct: 74 NAVDHAGMTPLRLAALFGHLEIVEVLLK 101
Score = 30.4 bits (70), Expect = 0.63
Identities = 6/32 (18%), Positives = 11/32 (34%)
Query: 16 SHLLDQVDKDGNTALHLATMENKPKAICLLLS 47
SH D L A + + +L++
Sbjct: 4 SHHHHHHGSDLGKKLLEAARAGRDDEVRILMA 35
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 34.5 bits (80), Expect = 0.039
Identities = 5/38 (13%), Positives = 12/38 (31%)
Query: 10 HLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLS 47
+ S+ + + + + LH A + L
Sbjct: 57 RTGLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLD 94
Score = 34.1 bits (79), Expect = 0.049
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 19 LDQVDKDGNTALHLATMENKPKAICLLLS 47
L+Q +K G+TALH A + + LLL+
Sbjct: 133 LNQQNKLGDTALHAAAWKGYADIVQLLLA 161
Score = 31.8 bits (73), Expect = 0.30
Identities = 4/30 (13%), Positives = 9/30 (30%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLSLN 49
D + + A +AT + +
Sbjct: 167 DLRNIEKKLAFDMATNAACASLLKKKQGTD 196
Score = 30.7 bits (70), Expect = 0.69
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
+ +DK G+TAL+ A + +L +
Sbjct: 100 NGLDKAGSTALYWACHGGHKDIVEMLFT 127
Score = 29.5 bits (67), Expect = 1.5
Identities = 5/25 (20%), Positives = 8/25 (32%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
K G + A +P+ L
Sbjct: 9 VKPGQVKVFRALYTFEPRTPDELYI 33
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 33.9 bits (79), Expect = 0.041
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 7/56 (12%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS----LNCKLLYNCMDLSAIDYAIYYKFPEAA 74
D TALH AT N + + LL+ ++ + + +A D +I + A
Sbjct: 97 DMLKMTALHWATEHNHQEVVELLIKYGADVHTQ---SKFCKTAFDISIDNGNEDLA 149
Score = 32.4 bits (75), Expect = 0.11
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
D G + LHLA +LL
Sbjct: 31 DWLGTSPLHLAAQYGHFSTTEVLLR 55
Score = 31.2 bits (72), Expect = 0.26
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
K T LH+A E + +LL
Sbjct: 64 TKVDRTPLHMAASEGHANIVEVLLK 88
Score = 29.3 bits (67), Expect = 1.2
Identities = 4/23 (17%), Positives = 7/23 (30%)
Query: 23 DKDGNTALHLATMENKPKAICLL 45
K TA ++ +L
Sbjct: 130 SKFCKTAFDISIDNGNEDLAEIL 152
Score = 29.3 bits (67), Expect = 1.5
Identities = 4/23 (17%), Positives = 9/23 (39%)
Query: 25 DGNTALHLATMENKPKAICLLLS 47
D L A + + +L++
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMA 23
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 34.8 bits (81), Expect = 0.053
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
+G T LH+A +N+ + LL
Sbjct: 206 HSPAWNGYTPLHIAAKQNQVEVARSLLQ 233
Score = 33.6 bits (78), Expect = 0.11
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 19 LDQVDKDGNTALHLATMENKPKAICLLLS 47
+ K G T LH+A K + LLL
Sbjct: 139 QACMTKKGFTPLHVAAKYGKVRVAELLLE 167
Score = 33.6 bits (78), Expect = 0.12
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 19 LDQVDKDGNTALHLATMENKPKAICLLLS 47
+ K+G T LH+A N + LLL
Sbjct: 172 PNAAGKNGLTPLHVAVHHNNLDIVKLLLP 200
Score = 33.6 bits (78), Expect = 0.13
Identities = 9/28 (32%), Positives = 11/28 (39%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
+ KD T LH A + LLL
Sbjct: 74 NAKAKDDQTPLHCAARIGHTNMVKLLLE 101
Score = 33.2 bits (77), Expect = 0.16
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
+ + T LH+A + LL
Sbjct: 41 NVSNVKVETPLHMAARAGHTEVAKYLLQ 68
Score = 33.2 bits (77), Expect = 0.17
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
+ G T LHLA E + + LLLS
Sbjct: 239 NAESVQGVTPLHLAAQEGHAEMVALLLS 266
Score = 33.2 bits (77), Expect = 0.17
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 19 LDQVDKDGNTALHLATMENKPKAICLLLS 47
+D + G T LH+A+ K + LL
Sbjct: 304 VDATTRMGYTPLHVASHYGNIKLVKFLLQ 332
Score = 32.5 bits (75), Expect = 0.30
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
+ +K G T LHL E +L+
Sbjct: 272 NLGNKSGLTPLHLVAQEGHVPVADVLIK 299
Score = 32.1 bits (74), Expect = 0.34
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
+ G+T LH+A E + + LL
Sbjct: 107 NLATTAGHTPLHIAAREGHVETVLALLE 134
Score = 32.1 bits (74), Expect = 0.38
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
+ G T LH+A+ + LL
Sbjct: 8 GGGGESGLTPLHVASFMGHLPIVKNLLQ 35
Score = 31.3 bits (72), Expect = 0.52
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 19 LDQVDKDGNTALHLATMENKPKAICLLLSL 48
++V DG T L +A +L +
Sbjct: 370 PNEVSSDGTTPLAIAKRLGYISVTDVLKVV 399
Score = 31.3 bits (72), Expect = 0.63
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
K G + LH A + + LLL
Sbjct: 341 TKLGYSPLHQAAQQGHTDIVTLLLK 365
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 33.5 bits (78), Expect = 0.058
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
D +GN LHLA E + + L+
Sbjct: 100 DNEGNLPLHLAAKEGHLRVVEFLVK 124
Score = 32.7 bits (76), Expect = 0.087
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
+ G+TA LA + + + + L+ +
Sbjct: 134 NHKGDTACDLARLYGRNEVVSLMQA 158
Score = 31.6 bits (73), Expect = 0.21
Identities = 6/25 (24%), Positives = 9/25 (36%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
D+ G +H A + LL
Sbjct: 67 DRTGFAVIHDAARAGFLDTLQTLLE 91
Score = 28.1 bits (64), Expect = 3.2
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 23 DKDGNTALHLATMENK 38
+ G TAL + + N
Sbjct: 35 NGFGRTALQVMKLGNP 50
Score = 27.3 bits (62), Expect = 5.6
Identities = 4/26 (15%), Positives = 8/26 (30%)
Query: 22 VDKDGNTALHLATMENKPKAICLLLS 47
+ + L A + + LL
Sbjct: 1 MAEPWGNELASAAARGDLEQLTSLLQ 26
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 32.5 bits (75), Expect = 0.061
Identities = 7/41 (17%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 10 HLNSVHSHLLDQ---VDKDGNTALHLATMENKPKAICLLLS 47
H + S L+ + + D L A + + +L++
Sbjct: 6 HHHHS-SGLVPRGSHMGSDLGKKLLEAARAGQDDEVRILMA 45
Score = 31.0 bits (71), Expect = 0.18
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
DK+G+T LHLA + + LLL
Sbjct: 51 AAKDKNGSTPLHLAARNGHLEVVKLLLE 78
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 34.0 bits (79), Expect = 0.064
Identities = 5/28 (17%), Positives = 9/28 (32%), Gaps = 1/28 (3%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
+ +G + L E+ A L
Sbjct: 249 QAKNAEGKRPVELVPPESP-LAQLFLER 275
Score = 33.6 bits (78), Expect = 0.088
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
+ V D +T L A + + LLL
Sbjct: 119 NGVTADWHTPLFNACVSGSWDCVNLLLQ 146
Score = 32.8 bits (76), Expect = 0.16
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 19 LDQVDKDGNTALHLATMENKPKAICLLLS 47
+D T L+LA + + LL
Sbjct: 183 IDHKISHLGTPLYLACENQQRACVKKLLE 211
Score = 32.8 bits (76), Expect = 0.16
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
+ + D + LH A + + +LL
Sbjct: 86 NIITADHVSPLHEACLGGHLSCVKILLK 113
Score = 31.7 bits (73), Expect = 0.38
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
K ++ LH + CLL+
Sbjct: 219 GKGQDSPLHAVVRTASEELACLLMD 243
Score = 30.9 bits (71), Expect = 0.71
Identities = 5/46 (10%), Positives = 11/46 (23%), Gaps = 5/46 (10%)
Query: 7 TMVHLNSVHSHLL-----DQVDKDGNTALHLATMENKPKAICLLLS 47
L + +H A + ++ L+S
Sbjct: 35 KPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLIS 80
Score = 29.8 bits (68), Expect = 1.6
Identities = 4/25 (16%), Positives = 11/25 (44%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
+ D + +H A + + L++
Sbjct: 154 ESDLASPIHEAARRGHVECVNSLIA 178
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 34.2 bits (79), Expect = 0.064
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 7/50 (14%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS----LNCKLLYNCMDLSAIDYAIYY 68
D+DG T + LA E + + + L+ + + D +A A
Sbjct: 310 DEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAV---DATDHTARQLAQAN 356
Score = 34.2 bits (79), Expect = 0.067
Identities = 8/36 (22%), Positives = 13/36 (36%)
Query: 12 NSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLS 47
+ + D G TALH A + + L+
Sbjct: 265 DYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVG 300
Score = 33.4 bits (77), Expect = 0.11
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
+ VD +TA LA N + +
Sbjct: 340 EAVDATDHTARQLAQANNHHNIVDIFDR 367
Score = 33.0 bits (76), Expect = 0.18
Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 7/69 (10%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS----LNCKLLYNCMDLSAIDYAIYYKFPEAALAMV 78
D D NT L LA + + + + L+ N + SA+ A + + M+
Sbjct: 163 DCDENTPLMLAVLARRRRLVAYLMKAGADPTIY---NKSERSALHQAAANRDFGMMVYML 219
Query: 79 THNTRGTEI 87
+I
Sbjct: 220 NSTKLKGDI 228
Score = 32.6 bits (75), Expect = 0.22
Identities = 5/34 (14%), Positives = 9/34 (26%)
Query: 23 DKDGNTALHLATMENKPKAICLLLSLNCKLLYNC 56
+ T LH + + L+ K
Sbjct: 122 PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAA 155
Score = 29.9 bits (68), Expect = 1.6
Identities = 7/32 (21%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Query: 19 LDQVDKDGNTALHLATMENKPKAIC---LLLS 47
++++D++G TAL + + LL+
Sbjct: 228 IEELDRNGMTALMIVAHNEGRDQVASAKLLVE 259
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 33.6 bits (78), Expect = 0.067
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
+ V++ GN LH A + + L++
Sbjct: 99 NAVNEHGNVPLHYACFWGQDQVAEDLVA 126
Score = 33.2 bits (77), Expect = 0.082
Identities = 3/28 (10%), Positives = 6/28 (21%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
+K G + A +
Sbjct: 132 SICNKYGEMPVDKAKAPLRELLRERAEK 159
Score = 32.0 bits (74), Expect = 0.18
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 19 LDQVDKDGNTALHLATMENKPKAICLLLS 47
L+Q D G + LH A E + + +L+
Sbjct: 32 LNQGDDHGFSPLHWACREGRSAVVEMLIM 60
Score = 31.6 bits (73), Expect = 0.26
Identities = 4/25 (16%), Positives = 7/25 (28%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
+ + E A+ L L
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWLD 26
Score = 30.5 bits (70), Expect = 0.66
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
++ +T LHLA + LL
Sbjct: 69 NRGDDTPLHLAASHGHRDIVQKLLQ 93
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction,
substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A
{Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A
3twx_A 3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 33.1 bits (77), Expect = 0.070
Identities = 3/28 (10%), Positives = 10/28 (35%)
Query: 22 VDKDGNTALHLATMENKPKAICLLLSLN 49
+ + + L A + + L ++
Sbjct: 4 GNSEADRQLLEAAKAGDVETVKKLCTVQ 31
Score = 32.7 bits (76), Expect = 0.095
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
D T LH A + K + LLL
Sbjct: 105 DLWKFTPLHEAAAKGKYEICKLLLQ 129
Score = 32.0 bits (74), Expect = 0.17
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
DK G LH A + LL+
Sbjct: 72 DKGGLVPLHNACSYGHYEVAELLVK 96
Score = 31.6 bits (73), Expect = 0.24
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
+ +T LH A N+ + LL
Sbjct: 39 EGRQSTPLHFAAGYNRVSVVEYLLQ 63
Score = 29.3 bits (67), Expect = 1.5
Identities = 8/25 (32%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
++DGNT L L + LL
Sbjct: 138 NRDGNTPLDLVK-DGDTDIQDLLRG 161
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 34.0 bits (79), Expect = 0.079
Identities = 11/28 (39%), Positives = 12/28 (42%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
+ D DG TAL LA K LL
Sbjct: 247 NDTDSDGKTALLLAVELKLKKIAELLCK 274
Score = 33.2 bits (77), Expect = 0.14
Identities = 5/25 (20%), Positives = 7/25 (28%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
+ N L A + LL
Sbjct: 2 AVEDNHLLIKAVQNEDVDLVQQLLE 26
Score = 32.1 bits (74), Expect = 0.26
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
D G TA A + K KA+ L
Sbjct: 102 DFYGFTAFMEAAVYGKVKALKFLYK 126
Score = 32.1 bits (74), Expect = 0.30
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
K+G T LA + K + L LS
Sbjct: 69 KKNGATPFLLAAIAGSVKLLKLFLS 93
Score = 32.1 bits (74), Expect = 0.32
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
+ + G T L LA + + LL
Sbjct: 213 NVRGERGKTPLILAVEKKHLGLVQRLLE 240
Score = 29.4 bits (67), Expect = 2.3
Identities = 8/29 (27%), Positives = 11/29 (37%), Gaps = 4/29 (13%)
Query: 23 DKDGNTALHLATMENKPKAIC----LLLS 47
D G AL A + + + LLL
Sbjct: 179 DNMGRNALIHALLSSDDSDVEAITHLLLD 207
Score = 29.0 bits (66), Expect = 2.9
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
+++ K G TAL A + + + +LL
Sbjct: 142 ERLRKGGATALMDAAEKGHVEVLKILLD 169
Score = 27.8 bits (63), Expect = 7.1
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
++ G T LH A ++ + LLL
Sbjct: 36 EEGGWTPLHNAVQMSREDIVELLLR 60
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 33.6 bits (78), Expect = 0.088
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 19 LDQVDKDGNTALHLATMENKPKAICLLLS 47
+D + G +AL LA I L
Sbjct: 203 VDAQNIKGESALDLAKQRKNVWMINHLQE 231
Score = 32.4 bits (75), Expect = 0.19
Identities = 4/29 (13%), Positives = 9/29 (31%)
Query: 19 LDQVDKDGNTALHLATMENKPKAICLLLS 47
+ +D + AT + L+
Sbjct: 2 MTHIDDYSTWDIVKATQYGIYERCRELVE 30
Score = 32.0 bits (74), Expect = 0.29
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
Q DK+ T LH A + N+ + +S
Sbjct: 36 RQPDKENVTLLHWAAINNRIDLVKYYIS 63
Score = 31.3 bits (72), Expect = 0.46
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
D +G + +HLA + L++
Sbjct: 106 DGEGCSCIHLAAQFGHTSIVAYLIA 130
Score = 30.5 bits (70), Expect = 0.82
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 20 DQVDKDGNTALHLATMENKPKAIC-LLLS 47
D +D++G T L A LLL+
Sbjct: 136 DMMDQNGMTPLMWAAYRTHSVDPTRLLLT 164
Score = 30.1 bits (69), Expect = 1.3
Identities = 10/25 (40%), Positives = 11/25 (44%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
NTALH A + I LLL
Sbjct: 174 KYHKNTALHWAVLAGNTTVISLLLE 198
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 33.2 bits (77), Expect = 0.094
Identities = 10/44 (22%), Positives = 14/44 (31%), Gaps = 6/44 (13%)
Query: 10 HLNSVHSHLLDQ------VDKDGNTALHLATMENKPKAICLLLS 47
V L + D+DG LH + + LLS
Sbjct: 14 EFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLS 57
Score = 33.2 bits (77), Expect = 0.099
Identities = 10/25 (40%), Positives = 11/25 (44%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
DK G T L A E A LL+
Sbjct: 171 DKQGWTPLFHALAEGHGDAAVLLVE 195
Score = 33.2 bits (77), Expect = 0.10
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
D D G T H+A + + L
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYD 93
Score = 32.8 bits (76), Expect = 0.14
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
G T LHLA + + L+
Sbjct: 104 TNQGVTCLHLAVGKKWFEVSQFLIE 128
Score = 31.3 bits (72), Expect = 0.46
Identities = 9/25 (36%), Positives = 9/25 (36%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
DK LH A K I LL
Sbjct: 137 DKFNQIPLHRAASVGSLKLIELLCG 161
Score = 29.7 bits (68), Expect = 1.5
Identities = 9/28 (32%), Positives = 11/28 (39%), Gaps = 3/28 (10%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
D VD G A +A E K L+
Sbjct: 202 DLVDNKGAKAEDVALNEQVKK---FFLN 226
Score = 28.6 bits (65), Expect = 3.3
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 26 GNTALHLATMENKPKAICLLL 46
N LH A MEN+ + LL
Sbjct: 2 SNYPLHQACMENEFFKVQELL 22
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 31.9 bits (74), Expect = 0.10
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
+ DK+G T LHLA + + LLL
Sbjct: 95 NAKDKNGRTPLHLAARNGHLEVVKLLLE 122
Score = 31.5 bits (73), Expect = 0.16
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
+ DK+G T LHLA + + LLL
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 30.8 bits (71), Expect = 0.28
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
+ DK+G T LHLA + + LLL
Sbjct: 29 NAKDKNGRTPLHLAARNGHLEVVKLLLE 56
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV;
NMR {Escherichia coli}
Length = 115
Score = 32.0 bits (74), Expect = 0.11
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
KDGNT LH A + + LLS
Sbjct: 3 MWGSKDGNTPLHNAAKNGHAEEVKKLLS 30
Score = 30.8 bits (71), Expect = 0.25
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
KDGNT HLA + + LL +
Sbjct: 72 SKDGNTPEHLAKKNGHHEIVKLLDA 96
Score = 29.7 bits (68), Expect = 0.58
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
KDGNT LHLA + + LLL+
Sbjct: 39 SKDGNTPLHLAAKNGHAEIVKLLLA 63
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Length = 156
Score = 32.4 bits (75), Expect = 0.13
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
+ D G T L LA + +L
Sbjct: 127 HRRDARGLTPLELALQRGAQDLVDILQG 154
Score = 32.0 bits (74), Expect = 0.18
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
+ D G +HLA E + L +
Sbjct: 95 NVPDGTGALPIHLAVQEGHTAVVSFLAA 122
Score = 29.7 bits (68), Expect = 0.93
Identities = 5/28 (17%), Positives = 11/28 (39%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
+ D G + +H A + +L+
Sbjct: 62 NVQDTSGTSPVHDAARTGFLDTLKVLVE 89
Score = 28.9 bits (66), Expect = 1.7
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
D +++ G TAL + M LL
Sbjct: 30 DALNRFGKTALQVM-MFGSTAIALELLK 56
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 32.4 bits (75), Expect = 0.13
Identities = 7/29 (24%), Positives = 9/29 (31%)
Query: 19 LDQVDKDGNTALHLATMENKPKAICLLLS 47
LD D G + LA L +
Sbjct: 104 LDVRDAWGRLPVDLAEELGHRDVARYLRA 132
Score = 27.8 bits (63), Expect = 4.4
Identities = 5/28 (17%), Positives = 10/28 (35%), Gaps = 1/28 (3%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
+ + G + + M + LLL
Sbjct: 39 NAPNSYGRRPIQVM-MMGSARVAELLLL 65
Score = 27.4 bits (62), Expect = 6.0
Identities = 4/28 (14%), Positives = 8/28 (28%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
+ L A + + + LL
Sbjct: 6 GSSMEPSADWLATAAARGRVEEVRALLE 33
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 31.2 bits (72), Expect = 0.14
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
+ DK+G T LHLA + + LLL
Sbjct: 29 NAKDKNGRTPLHLAARNGHLEVVKLLLE 56
Score = 31.2 bits (72), Expect = 0.14
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
DK+G T LHLA + + LLL
Sbjct: 65 DKNGRTPLHLAARNGHLEVVKLLLE 89
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 32.0 bits (74), Expect = 0.14
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 19 LDQVDKDGNTALHLATMENKPKAICLLLS 47
LD D G + LA + L +
Sbjct: 104 LDVCDAWGRLPVDLAEEQGHRDIARYLHA 132
Score = 30.1 bits (69), Expect = 0.52
Identities = 4/28 (14%), Positives = 9/28 (32%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
+ + L A + + + LL
Sbjct: 6 HMLGGSSDAGLATAAARGQVETVRQLLE 33
Score = 27.0 bits (61), Expect = 6.1
Identities = 1/14 (7%), Positives = 7/14 (50%)
Query: 20 DQVDKDGNTALHLA 33
+ +++ G + +
Sbjct: 39 NALNRFGRRPIQVM 52
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 32.8 bits (76), Expect = 0.15
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 19 LDQVDKDGNTALHLATMENKPKAICLLLS 47
L V+ G++ LH+A EN+ + L LS
Sbjct: 170 LHAVNIHGDSPLHIAARENRYDCVVLFLS 198
Score = 32.4 bits (75), Expect = 0.19
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
D +D T L A N +A+ L+
Sbjct: 38 DTCSEDQRTPLMEAAENNHLEAVKYLIK 65
Score = 32.0 bits (74), Expect = 0.26
Identities = 5/28 (17%), Positives = 13/28 (46%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
+K+G T L A++ ++ + +
Sbjct: 204 TLKNKEGETPLQCASLNSQVWSALQMSK 231
Score = 32.0 bits (74), Expect = 0.28
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
D D +G+T LHLA + + + LLS
Sbjct: 71 DPKDAEGSTCLHLAAKKGHYEVVQYLLS 98
Score = 31.2 bits (72), Expect = 0.46
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
+ D G T + AT + LLLS
Sbjct: 105 NCQDDGGWTPMIWATEYKHVDLVKLLLS 132
Score = 31.2 bits (72), Expect = 0.49
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
D + N LH A +LL+
Sbjct: 141 DNEENICLHWAAFSGCVDIAEILLA 165
Score = 30.1 bits (69), Expect = 1.2
Identities = 4/25 (16%), Positives = 9/25 (36%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
++ + LH A +L+
Sbjct: 8 HQNKRSPLHAAAEAGHVDICHMLVQ 32
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 31.6 bits (73), Expect = 0.16
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
++ LH A + LLLS
Sbjct: 73 GYQNDSPLHDAAKNGHVDIVKLLLS 97
Score = 31.6 bits (73), Expect = 0.19
Identities = 4/28 (14%), Positives = 9/28 (32%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
+ V+ G + E+ + L
Sbjct: 103 NAVNIFGLRPVDYTDDESMKSLLLLPEK 130
Score = 31.6 bits (73), Expect = 0.19
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
+ G T LH+A+++ ++ LL
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQ 31
Score = 29.7 bits (68), Expect = 0.74
Identities = 10/25 (40%), Positives = 11/25 (44%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
D G T LH A K + LLL
Sbjct: 40 DHAGWTPLHEACNHGHLKVVELLLQ 64
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 32.9 bits (76), Expect = 0.16
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
Q D GNTAL+ A + + L +
Sbjct: 89 SQFDDKGNTALYYAVDSGNMQTVKLFVK 116
Score = 32.5 bits (75), Expect = 0.18
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
+ D G++A + A +N + +C LL+
Sbjct: 25 FKADVHGHSASYYAIADNNVRLVCTLLN 52
Score = 29.8 bits (68), Expect = 1.5
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 24 KDGNTALHLATMENKPKAICLLLS 47
+ LH A K + +LL
Sbjct: 60 LENEFPLHQAATLEDTKIVKILLF 83
Score = 29.8 bits (68), Expect = 1.6
Identities = 4/25 (16%), Positives = 8/25 (32%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
+ +H+ + LLL
Sbjct: 158 LAILLSCIHITIKNGHVDMMILLLD 182
Score = 28.3 bits (64), Expect = 4.6
Identities = 8/29 (27%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 20 DQVDKDG-NTALHLATMENKPKAICLLLS 47
K G T+ + A M N + LS
Sbjct: 122 MFYGKTGWKTSFYHAVMLNDVSIVSYFLS 150
Score = 27.9 bits (63), Expect = 6.1
Identities = 5/43 (11%), Positives = 12/43 (27%), Gaps = 5/43 (11%)
Query: 20 DQVDKDGNT-ALHLATMENKPKAICLLLS----LNCKLLYNCM 57
+ + + LA + + L + L N +
Sbjct: 188 NTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANLENVL 230
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 32.8 bits (75), Expect = 0.17
Identities = 11/45 (24%), Positives = 15/45 (33%), Gaps = 1/45 (2%)
Query: 3 GYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLS 47
G L L + + G T L LA E K + +L
Sbjct: 199 GLLQMGARLCP-TVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQ 242
Score = 29.8 bits (67), Expect = 1.4
Identities = 8/20 (40%), Positives = 9/20 (45%)
Query: 19 LDQVDKDGNTALHLATMENK 38
L+ D GNT LH M
Sbjct: 165 LEATDSLGNTVLHALVMIAD 184
Score = 28.6 bits (64), Expect = 3.9
Identities = 9/54 (16%), Positives = 17/54 (31%), Gaps = 3/54 (5%)
Query: 19 LDQVDKDGNTALHLATM---ENKPKAICLLLSLNCKLLYNCMDLSAIDYAIYYK 69
G T L A + + I LL ++ ++A +Y+
Sbjct: 36 AYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQ 89
Score = 27.8 bits (62), Expect = 6.9
Identities = 7/42 (16%), Positives = 16/42 (38%), Gaps = 5/42 (11%)
Query: 6 NTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLS 47
NT++H + + + N+AL + + + L
Sbjct: 173 NTVLHALVMIAD-----NSPENSALVIHMYDGLLQMGARLCP 209
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 32.0 bits (74), Expect = 0.17
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
+ K+ +AL LA+ + LLL
Sbjct: 63 HILAKERESALSLASTGGYTDIVGLLLE 90
Score = 30.5 bits (70), Expect = 0.58
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 19 LDQVDKDGNTALHLATMENKPKAICLLLS 47
++ D +G T L A N K + LL+
Sbjct: 95 INIYDWNGGTPLLYAVRGNHVKCVEALLA 123
Score = 30.5 bits (70), Expect = 0.59
Identities = 5/28 (17%), Positives = 9/28 (32%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
G T + LA K ++ +
Sbjct: 129 TTEADSGYTPMDLAVALGYRKVQQVIEN 156
Score = 30.5 bits (70), Expect = 0.66
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
++ D+ G T L A+ + + + LL
Sbjct: 30 NKPDERGFTPLIWASAFGEIETVRFLLE 57
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 32.4 bits (75), Expect = 0.18
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
+ + D + LH A + + +LL
Sbjct: 30 NIITADHVSPLHEACLGGHLSCVKILLK 57
Score = 32.0 bits (74), Expect = 0.27
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
+ V D +T L A + + LLL
Sbjct: 63 NGVTADWHTPLFNACVSGSWDCVNLLLQ 90
Score = 32.0 bits (74), Expect = 0.28
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 19 LDQVDKDGNTALHLATMENKPKAICLLLS 47
+D T L+LA + + LL
Sbjct: 127 IDHKISHLGTPLYLACENQQRACVKKLLE 155
Score = 31.6 bits (73), Expect = 0.36
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
K ++ LH + CLL+
Sbjct: 163 GKGQDSPLHAVARTASEELACLLMD 187
Score = 31.2 bits (72), Expect = 0.43
Identities = 3/28 (10%), Positives = 7/28 (25%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
+ ++ K L+L
Sbjct: 224 SLMQLCRLRIRKCFGIQQHHKITKLVLP 251
Score = 31.2 bits (72), Expect = 0.44
Identities = 4/25 (16%), Positives = 11/25 (44%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
+ D + +H A + + L++
Sbjct: 98 ESDLASPIHEAARRGHVECVNSLIA 122
Score = 30.1 bits (69), Expect = 1.3
Identities = 5/28 (17%), Positives = 9/28 (32%), Gaps = 2/28 (7%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
+ +G + L E+ L L
Sbjct: 193 QAKNAEGKRPVELVPPES--PLAQLFLE 218
>3v31_A Ankyrin repeat family A protein 2; structural genomics
consortium, SGC, ankra2, ANK repeat, Pro binding,
HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 32.0 bits (74), Expect = 0.19
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 19 LDQVDKDGNTALHLATMENKPKAICLLLS 47
++ D++G T L A + + LL
Sbjct: 29 INHTDEEGFTPLMWAAAHGQIAVVEFLLQ 57
Score = 32.0 bits (74), Expect = 0.19
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
++ D +G T L A N K + +LL
Sbjct: 96 NEYDWNGGTPLLYAVHGNHVKCVKMLLE 123
Score = 31.6 bits (73), Expect = 0.28
Identities = 4/28 (14%), Positives = 8/28 (28%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
G ++ LA ++ S
Sbjct: 129 TIETDSGYNSMDLAVALGYRSVQQVIES 156
Score = 31.2 bits (72), Expect = 0.35
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
+ K +AL LA + + +LL
Sbjct: 63 QLLGKGRESALSLACSKGYTDIVKMLLD 90
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END
capping, inhibition, prote binding, actin capping,
actin-binding, cytoskeleton, ANK RE; 2.20A {Homo
sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Length = 123
Score = 31.2 bits (72), Expect = 0.20
Identities = 10/25 (40%), Positives = 11/25 (44%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
DK T L A E + LLLS
Sbjct: 70 DKHHITPLLSAVYEGHVSCVKLLLS 94
Score = 29.3 bits (67), Expect = 0.85
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
+ G LH A + + + LL
Sbjct: 37 LEGGRKPLHYAADCGQLEILEFLLL 61
Score = 28.5 bits (65), Expect = 1.9
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 20 DQVDKDGNTALHLATMEN 37
DG TA +
Sbjct: 100 TVKGPDGLTAFEATDNQA 117
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 32.0 bits (74), Expect = 0.23
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
D+VD +GNT L++A N + L+
Sbjct: 33 DEVDTEGNTPLNIAVHNNDIEIAKALID 60
Score = 32.0 bits (74), Expect = 0.24
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
D G TA+ A + + +L
Sbjct: 175 DNSGRTAMDYANQKGYTEISKILAQ 199
Score = 30.5 bits (70), Expect = 0.73
Identities = 2/25 (8%), Positives = 10/25 (40%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
+ ++ A + + + + +L
Sbjct: 69 NSISDSPYLYAGAQGRTEILAYMLK 93
Score = 30.5 bits (70), Expect = 0.77
Identities = 4/25 (16%), Positives = 7/25 (28%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
+ L A + K +L
Sbjct: 3 TYEVGALLEAANQRDTKKVKEILQD 27
Score = 29.3 bits (67), Expect = 1.5
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 19 LDQVDKDGNTALHLATMENKPKAICLLLS 47
L++ ++ G AL A + + LLL
Sbjct: 99 LNKHNRYGGNALIPAAEKGHIDNVKLLLE 127
Score = 28.2 bits (64), Expect = 3.5
Identities = 8/33 (24%), Positives = 12/33 (36%), Gaps = 5/33 (15%)
Query: 20 DQVDKDGNTALHLATMENKPKAIC-----LLLS 47
D + G TAL A + + LL+
Sbjct: 134 DFQNDFGYTALIEAVGLREGNQLYQDIVKLLME 166
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 32.2 bits (74), Expect = 0.24
Identities = 4/25 (16%), Positives = 8/25 (32%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
+ G +L N K ++
Sbjct: 2 EITGQVSLPPGKRTNLRKTGSERIA 26
Score = 31.4 bits (72), Expect = 0.39
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
D DG T LH A N + L+
Sbjct: 100 DSDGWTPLHCAASCNNVQVCKFLVE 124
Score = 30.3 bits (69), Expect = 1.0
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
+ +G TALH A + + L+
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQ 91
Score = 28.7 bits (65), Expect = 2.9
Identities = 5/47 (10%), Positives = 10/47 (21%), Gaps = 12/47 (25%)
Query: 3 GYTNTMVHLNSVHSHL------------LDQVDKDGNTALHLATMEN 37
T + + ++K AL +N
Sbjct: 137 MQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQN 183
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 31.8 bits (73), Expect = 0.29
Identities = 8/28 (28%), Positives = 10/28 (35%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
+ D G T LH A N L+
Sbjct: 81 NSPDSHGWTPLHCAASCNDTVICMALVQ 108
Score = 29.9 bits (68), Expect = 1.1
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
Q +++G TALH A + L++
Sbjct: 48 SQPNEEGITALHNAICGANYSIVDFLIT 75
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 31.3 bits (71), Expect = 0.50
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 18 LLDQVDKDGNTALHLATMENKPKAICLLLS 47
L + ++ G T L LA K + +L
Sbjct: 225 LEEITNRKGLTPLALAASSGKIGVLAYILQ 254
Score = 29.4 bits (66), Expect = 2.1
Identities = 3/21 (14%), Positives = 8/21 (38%), Gaps = 1/21 (4%)
Query: 17 HLLDQVDKDGNTALHLATMEN 37
++L + + H A +
Sbjct: 251 YILQR-EIHEPECRHAAAHHH 270
Score = 28.2 bits (63), Expect = 5.0
Identities = 6/36 (16%), Positives = 11/36 (30%), Gaps = 1/36 (2%)
Query: 19 LDQVDKDGNTALHLATME-NKPKAICLLLSLNCKLL 53
+ D GNT LH + ++ +
Sbjct: 177 ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEI 212
Score = 28.2 bits (63), Expect = 5.5
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 23 DKDGNTALHLATMENKPKAICLLLS 47
G TALH+A + LL+
Sbjct: 98 YYKGQTALHIAIERRNMTLVTLLVE 122
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 29.9 bits (67), Expect = 1.7
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLSL 48
+ D N L LA A LLLS+
Sbjct: 313 ATIPGDANELLRLALRLGNQGACALLLSI 341
>1twf_C B44.5, DNA-directed RNA polymerase II 45 kDa polypeptide;
transcription, mRNA, multiprotein complex; HET: UTP;
2.30A {Saccharomyces cerevisiae} SCOP: d.74.3.1
d.181.1.1 PDB: 1i3q_C 1i6h_C 1k83_C* 1nik_C 1nt9_C
1pqv_C 1r5u_C 1r9s_C* 1r9t_C* 1sfo_C* 1twa_C* 1twc_C*
1i50_C* 1twg_C* 1twh_C* 1wcm_C 1y1v_C 1y1w_C 1y1y_C
1y77_C* ...
Length = 318
Score = 28.4 bits (62), Expect = 4.5
Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 9/87 (10%)
Query: 221 RNLPKFLLEKVDKMEIYEYPNECKGKLGFLDLVIRKWFCNPFT----EDAIDMVLESNGN 276
P L+ D + E + + +PF D M +ES G+
Sbjct: 179 EYDPWNKLKHTDYWYEQDSAKEWP-QSKNCEYEDPPNEGDPFDYKAQADTFYMNVESVGS 237
Query: 277 ----DVFTDEIDKLKRKLNEIQIHLDH 299
V ID L++K+ I + L
Sbjct: 238 IPVDQVVVRGIDTLQKKVASILLALTQ 264
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone,
hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus
influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Length = 310
Score = 27.2 bits (61), Expect = 9.9
Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 263 TEDAIDMVLESNGNDVFTDEIDKLKRK 289
AID V E NG VF DEIDK+ +K
Sbjct: 107 AGGAIDAV-EQNG-IVFIDEIDKICKK 131
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.137 0.414
Gapped
Lambda K H
0.267 0.0902 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,170,847
Number of extensions: 355144
Number of successful extensions: 1402
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1392
Number of HSP's successfully gapped: 276
Length of query: 420
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 324
Effective length of database: 4,021,377
Effective search space: 1302926148
Effective search space used: 1302926148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (26.2 bits)