RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8764
(420 letters)
>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 43.9 bits (102), Expect = 2e-05
Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 8 MVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAI 66
+ L + +++L+ D +G+T L++A + LL + N L +D+
Sbjct: 241 NLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 300
Score = 42.3 bits (98), Expect = 5e-05
Identities = 24/170 (14%), Positives = 48/170 (28%), Gaps = 10/170 (5%)
Query: 21 QVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVT 79
VD+ GNT LH T + + L+ + M S + A+ +
Sbjct: 102 PVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEA 161
Query: 80 HNTRGTEIMSLRSDKH--PCVTLALVASMPRVFESVQDKS------ITKANCKKDSKSFY 131
+ L + + + + M + + I K +
Sbjct: 162 LLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTN 221
Query: 132 IKYNFSCLQCLRIYPEINEKTGDATAISKPIPLPALN-NTALHLATISHH 180
K + + I E I+ + N +T L++A +
Sbjct: 222 EKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGN 271
>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId:
9606]}
Length = 408
Score = 38.8 bits (89), Expect = 0.001
Identities = 11/68 (16%), Positives = 21/68 (30%), Gaps = 1/68 (1%)
Query: 8 MVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAI 66
+V H ++ K G + LH A + + LLL + + + A
Sbjct: 312 LVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAK 371
Query: 67 YYKFPEAA 74
+
Sbjct: 372 RLGYISVT 379
Score = 34.6 bits (78), Expect = 0.018
Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 1/64 (1%)
Query: 19 LDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAM 77
+ + T LH+A + LL K+ D + + A +
Sbjct: 26 PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLL 85
Query: 78 VTHN 81
+ +N
Sbjct: 86 LENN 89
Score = 32.3 bits (72), Expect = 0.097
Identities = 10/40 (25%), Positives = 13/40 (32%)
Query: 19 LDQVDKDGNTALHLATMENKPKAICLLLSLNCKLLYNCMD 58
++ KD T LH A + LLL N
Sbjct: 59 VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTA 98
Score = 30.3 bits (67), Expect = 0.46
Identities = 11/51 (21%), Positives = 16/51 (31%)
Query: 8 MVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKLLYNCMD 58
MV L + +K G T LHL E +L+ +
Sbjct: 246 MVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRM 296
Score = 28.8 bits (63), Expect = 1.2
Identities = 25/182 (13%), Positives = 49/182 (26%), Gaps = 28/182 (15%)
Query: 8 MVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLS-LNCKLLYNCMDLSAIDYAI 66
+V L +G T LH+A +N+ + LL + ++ + A
Sbjct: 180 IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAA 239
Query: 67 YYKFPEAALAMVTH--------NTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSI 118
E +++ + T + + + H V L+ V + +
Sbjct: 240 QEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYT 299
Query: 119 TKANCKKDSKSFYIKYNFSCLQCLRIYPEINEKTGDATAISKPIPLPALNNTALHLATIS 178
+K+ +N KT + LH A
Sbjct: 300 PLHVASHYGNIKLVKFLLQHQAD------VNAKTKL-------------GYSPLHQAAQQ 340
Query: 179 HH 180
H
Sbjct: 341 GH 342
Score = 27.2 bits (59), Expect = 3.8
Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Query: 28 TALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTHN 81
T LH+A+ + LL + N + + A E A ++ +
Sbjct: 2 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNK 56
>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor
I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId:
10090]}
Length = 255
Score = 37.8 bits (86), Expect = 0.001
Identities = 21/125 (16%), Positives = 38/125 (30%), Gaps = 10/125 (8%)
Query: 18 LLDQVDKDGNTALHLATMENKPKAICLLLSLNCKLLY----NCMDLSAIDYAIYYKFPEA 73
+ V +DG+TALHLA + + LL + Y N + +A+ A
Sbjct: 1 VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60
Query: 74 ALAMVTHNTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSITKANCKKDSKSFYIK 133
+ T +A R + + +D+ Y+
Sbjct: 61 VEKLYAAGAGVLVAE------RGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLT 114
Query: 134 YNFSC 138
+ C
Sbjct: 115 QSQDC 119
Score = 34.7 bits (78), Expect = 0.017
Identities = 7/29 (24%), Positives = 9/29 (31%)
Query: 19 LDQVDKDGNTALHLATMENKPKAICLLLS 47
G T L A + P LL +
Sbjct: 218 PTARMYGGRTPLGSALLRPNPILARLLRA 246
Score = 30.8 bits (68), Expect = 0.27
Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 1/65 (1%)
Query: 17 HLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAAL 75
LD + G TALHLA + + + L + + + +A+ A + A
Sbjct: 36 EYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCAC 95
Query: 76 AMVTH 80
++
Sbjct: 96 VLLQP 100
>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human
(Homo sapiens) [TaxId: 9606]}
Length = 285
Score = 37.3 bits (85), Expect = 0.003
Identities = 15/59 (25%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Query: 1 MSGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKLLYNCMDL 59
+ + L ++ D DG TAL LA K LL +C DL
Sbjct: 228 EKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAST--DCGDL 284
Score = 33.4 bits (75), Expect = 0.042
Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 14/82 (17%)
Query: 10 HLNSVHSHLLDQ------VDKDGNTALHLATMENKPKAICLLLS-----LNCKLLYNCMD 58
+ ++ LLD + G T L LA + + LL +N +
Sbjct: 197 DVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDT---DSDG 253
Query: 59 LSAIDYAIYYKFPEAALAMVTH 80
+A+ A+ K + A +
Sbjct: 254 KTALLLAVELKLKKIAELLCKR 275
Score = 30.7 bits (68), Expect = 0.29
Identities = 18/158 (11%), Positives = 35/158 (22%), Gaps = 3/158 (1%)
Query: 25 DGNTALHLATMENKPKAICLLLSLNCKLLY--NCMDLSAIDYAIYYKFPEAALAMVTHNT 82
+ N L A + LL + + + + A+ + ++ H
Sbjct: 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63
Query: 83 RGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSITKANCKKDSKSFYIKYNFSCLQCL 142
+ +A + ++F S + Y
Sbjct: 64 DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKF 123
Query: 143 RIYPEINEKTGDATAISKPIPLPALNNTALHLATISHH 180
N T + TAL A H
Sbjct: 124 LYKRGANVNLRRKTKEDQERLRKG-GATALMDAAEKGH 160
Score = 29.5 bits (65), Expect = 0.67
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 15 HSHLLDQVDKDGNTALHLATMENKPKAICLLLS 47
+++ K G TAL A + + + +LL
Sbjct: 137 TKEDQERLRKGGATALMDAAEKGHVEVLKILLD 169
Score = 26.5 bits (57), Expect = 7.1
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 21 QVDKDGNTALHLATMENKPKAICLLLSLNCKLLYNCM 57
Q ++ G T LH A ++ + LLL +
Sbjct: 34 QEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKK 70
>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId:
9606]}
Length = 156
Score = 35.6 bits (80), Expect = 0.004
Identities = 8/47 (17%), Positives = 20/47 (42%)
Query: 1 MSGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLS 47
G+ + L + + + G+TA LA + + + + L+ +
Sbjct: 108 KEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 154
>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans
[TaxId: 6239]}
Length = 277
Score = 36.3 bits (82), Expect = 0.005
Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 1/75 (1%)
Query: 1 MSGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDL 59
+ +L D+ D+DG T + LA E + + + L+ + + D
Sbjct: 196 QVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDH 255
Query: 60 SAIDYAIYYKFPEAA 74
+A A
Sbjct: 256 TARQLAQANNHHNIV 270
Score = 32.0 bits (71), Expect = 0.12
Identities = 6/39 (15%), Positives = 13/39 (33%), Gaps = 1/39 (2%)
Query: 16 SHLLDQVD-KDGNTALHLATMENKPKAICLLLSLNCKLL 53
++ +D + T LH + + L+ K
Sbjct: 22 RESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKEC 60
Score = 31.2 bits (69), Expect = 0.22
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 19 LDQVDKDGNTALHLATMENKPKAICLLL 46
++ VD +TA LA N + +
Sbjct: 247 VEAVDATDHTARQLAQANNHHNIVDIFD 274
>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo
sapiens) [TaxId: 9606]}
Length = 156
Score = 32.9 bits (73), Expect = 0.034
Identities = 10/47 (21%), Positives = 14/47 (29%)
Query: 1 MSGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLS 47
+T V L + D G T L LA + +L
Sbjct: 108 AVQEGHTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQG 154
>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 153
Score = 32.5 bits (72), Expect = 0.037
Identities = 6/38 (15%), Positives = 12/38 (31%)
Query: 8 MVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLL 45
+V L + + K TA ++ +L
Sbjct: 115 VVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 26.7 bits (57), Expect = 4.0
Identities = 9/158 (5%), Positives = 35/158 (22%), Gaps = 15/158 (9%)
Query: 25 DGNTALHLATMENKPKAICLLLSLNCKLLYNCMDLSAIDYAIYYKFPEAALAMVTHNTRG 84
D L A + + +L++ + + S + A Y ++
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR 60
Query: 85 TEIMSLRS--DKHPCVTLALVASMPRVFESVQDKSITKANCKKDSKSFYIKYNFSCLQCL 142
+ + + + + +
Sbjct: 61 DARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLI 120
Query: 143 RIYPEINEKTGDATAISKPIPLPALNNTALHLATISHH 180
+ +++ ++ TA ++ + +
Sbjct: 121 KYGADVHTQSKF-------------CKTAFDISIDNGN 145
>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1,
MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 291
Score = 33.2 bits (74), Expect = 0.051
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 1 MSGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDL 59
GYT + L + + D DG T LH A K +A +L+ C + N +
Sbjct: 208 AKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQ 266
Query: 60 SAIDYA 65
+A D A
Sbjct: 267 TAFDVA 272
>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory
subunit 10, gankyrin {Human (Homo sapiens) [TaxId:
9606]}
Length = 223
Score = 31.5 bits (70), Expect = 0.15
Identities = 10/42 (23%), Positives = 15/42 (35%)
Query: 2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAIC 43
SG + L + D+D TALH A + +
Sbjct: 13 SGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVE 54
Score = 28.8 bits (63), Expect = 1.2
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 19 LDQVDKDGNTALHLATMENKPKAICLLLSLNCKL 52
++ V+++G T LH A +N+ + +LL
Sbjct: 96 VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 129
>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens)
[TaxId: 9606]}
Length = 221
Score = 31.0 bits (68), Expect = 0.22
Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 3/47 (6%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLSL---NCKLLYNCMDLSAID 63
++V G + L + L L N ++L D + D
Sbjct: 172 NRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYD 218
Score = 28.3 bits (61), Expect = 1.3
Identities = 7/39 (17%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 25 DGNTALHLATMENKPKAICLLLSLNCKLLYNCMDLSAID 63
DG++ LHLA + + ++ + + L+ +
Sbjct: 1 DGDSFLHLAIIHEEKALTMEVIRQ---VKGDLAFLNFQN 36
>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit
10, gankyrin {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 229
Score = 30.6 bits (67), Expect = 0.26
Identities = 18/99 (18%), Positives = 28/99 (28%)
Query: 1 MSGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKLLYNCMDLS 60
M + L LL Q D+DG LH + + LLS + +
Sbjct: 9 MENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDD 68
Query: 61 AIDYAIYYKFPEAALAMVTHNTRGTEIMSLRSDKHPCVT 99
+ + L +V L + VT
Sbjct: 69 SGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVT 107
Score = 27.1 bits (58), Expect = 4.0
Identities = 7/19 (36%), Positives = 8/19 (42%)
Query: 19 LDQVDKDGNTALHLATMEN 37
D VD G A +A E
Sbjct: 199 YDLVDNKGAKAEDVALNEQ 217
Score = 26.7 bits (57), Expect = 4.5
Identities = 12/73 (16%), Positives = 24/73 (32%), Gaps = 2/73 (2%)
Query: 27 NTALHLATMENKPKAICLLLSLNCKLLY--NCMDLSAIDYAIYYKFPEAALAMVTHNTRG 84
N LH A MEN+ + LL LL + + +++ ++ E +++
Sbjct: 1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 60
Query: 85 TEIMSLRSDKHPC 97
Sbjct: 61 NLDDYPDDSGWTP 73
>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 228
Score = 30.2 bits (66), Expect = 0.38
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 25 DGNTALHLATMENKPKAICLLLSL 48
DG+T LH+A ++ A+ L++L
Sbjct: 2 DGDTPLHIAVVQGNLPAVHRLVNL 25
Score = 27.1 bits (58), Expect = 3.8
Identities = 3/19 (15%), Positives = 6/19 (31%)
Query: 19 LDQVDKDGNTALHLATMEN 37
+ +T L +A
Sbjct: 203 SSLKNCHNDTPLMVARSRR 221
>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 209
Score = 30.1 bits (66), Expect = 0.39
Identities = 11/37 (29%), Positives = 14/37 (37%)
Query: 21 QVDKDGNTALHLATMENKPKAICLLLSLNCKLLYNCM 57
+DK G T+LHLA + A LL
Sbjct: 18 TMDKTGETSLHLAARFARADAAKRLLDAGADANSQDN 54
Score = 29.0 bits (63), Expect = 0.99
Identities = 4/27 (14%), Positives = 8/27 (29%)
Query: 19 LDQVDKDGNTALHLATMENKPKAICLL 45
+ D +A+ + LL
Sbjct: 182 REITDHMDRLPRDVASERLHHDIVRLL 208
>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416
{Legionella pneumophila [TaxId: 446]}
Length = 346
Score = 29.9 bits (66), Expect = 0.66
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLSL 48
+ D N L LA A LLLS+
Sbjct: 311 ATIPGDANELLRLALRLGNQGACALLLSI 339
Score = 28.7 bits (63), Expect = 1.3
Identities = 5/32 (15%), Positives = 9/32 (28%)
Query: 19 LDQVDKDGNTALHLATMENKPKAICLLLSLNC 50
+ + + A LA + L L
Sbjct: 119 VKVIQAENYQAFRLAAENGHLHVLNRLCELAP 150
>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 154
Score = 27.6 bits (60), Expect = 1.6
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 20 DQVDKDGNTALHLATMENKPKAICLLLS 47
+ ++ G T L +A LL
Sbjct: 108 EIANESGETPLDIAKRLKHEHCEELLTQ 135
>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo
sapiens) [TaxId: 9606]}
Length = 125
Score = 27.2 bits (58), Expect = 1.9
Identities = 7/47 (14%), Positives = 11/47 (23%)
Query: 1 MSGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLS 47
+ + LD D G + LA L +
Sbjct: 77 AREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA 123
>d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]}
Length = 97
Score = 26.2 bits (58), Expect = 2.6
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 5/69 (7%)
Query: 263 TEDAID-MVLESNGNDVFTDEIDKLKRKLNEIQIHLDHQFMFLRLIVHKMDIKTETDERD 321
ED I MV ++ N E D+ +L + + DH R V + K D++
Sbjct: 2 NEDEIQKMVRDAEANA----EADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKT 57
Query: 322 EGTSSNKEL 330
S+ L
Sbjct: 58 AIESALTAL 66
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 26.5 bits (57), Expect = 4.9
Identities = 5/85 (5%), Positives = 24/85 (28%)
Query: 257 WFCNPFTEDAIDMVLESNGNDVFTDEIDKLKRKLNEIQIHLDHQFMFLRLIVHKMDIKTE 316
+ +++S + + + I + + + +K ++ T
Sbjct: 67 LKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA 126
Query: 317 TDERDEGTSSNKELHPLLYICGTAI 341
+ E+ ++ ++
Sbjct: 127 RPPSKIKDALESEIQKVIERRKKSL 151
>d1twfc1 d.74.3.1 (C:3-41,C:173-268) RPB3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 135
Score = 25.9 bits (57), Expect = 6.3
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 8/49 (16%)
Query: 259 CNPFTEDA----IDMVLESNG----NDVFTDEIDKLKRKLNEIQIHLDH 299
+PF A M +ES G + V ID L++K+ I + L
Sbjct: 83 GDPFDYKAQADTFYMNVESVGSIPVDQVVVRGIDTLQKKVASILLALTQ 131
>d1qtwa_ c.1.15.1 (A:) Endonuclease IV {Escherichia coli [TaxId:
562]}
Length = 285
Score = 26.4 bits (57), Expect = 6.7
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 265 DAIDMVLESNGNDVFTDEIDKLKRKLNE 292
D I ++LE+ D++ +EI LK + E
Sbjct: 254 DGIPLILETINPDIWAEEIAWLKAQQTE 281
>d1px5a2 d.218.1.6 (A:1-200) 2'-5'-oligoadenylate synthetase 1,
OAS1, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 200
Score = 26.0 bits (57), Expect = 8.7
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 267 IDMVLESNGNDVFTDEIDKLKRKLNEIQIHLDH 299
D+V+ F D++ + + EI+ L+
Sbjct: 75 ADLVVFLTKLTSFEDQLRRRGEFIQEIRRQLEA 107
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.137 0.414
Gapped
Lambda K H
0.267 0.0472 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,508,708
Number of extensions: 69089
Number of successful extensions: 299
Number of sequences better than 10.0: 1
Number of HSP's gapped: 287
Number of HSP's successfully gapped: 59
Length of query: 420
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 332
Effective length of database: 1,199,356
Effective search space: 398186192
Effective search space used: 398186192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.2 bits)