BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8766
(135 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 70/133 (52%), Gaps = 14/133 (10%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD+N DK+ +PL LAA G + V L++ A++ KD + LHL G H+
Sbjct: 25 GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREG--HL- 81
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
E+ V L G +N KDK G +PLH A+REGH+ +E L+ GA +N +
Sbjct: 82 ----EIVEVLLKAGAD-------VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQ 130
Query: 123 NNSNESPLHLAAR 135
+ ++P LA R
Sbjct: 131 DKFGKTPFDLAIR 143
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 61/119 (51%), Gaps = 14/119 (11%)
Query: 17 LLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEG 76
LL AA G V L+ N A++ KD + LHL G H+ E+ V L G
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREG--HL-----EIVEVLLKAG 58
Query: 77 EASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
+N KDK G +PLH A+REGH+ +E L+ GA +N K+ +PLHLAAR
Sbjct: 59 AD-------VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAR 110
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 50/104 (48%), Gaps = 14/104 (13%)
Query: 2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHI 61
GAD+N DK+ +PL LAA G + V L++ A++ KD + LHL G H+
Sbjct: 57 AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREG--HL 114
Query: 62 KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGH 105
E+ V L G +N +DK G +P A REGH
Sbjct: 115 -----EIVEVLLKAGAD-------VNAQDKFGKTPFDLAIREGH 146
Score = 33.1 bits (74), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%)
Query: 2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHI 61
GAD+N DK+ +PL LAA G + V L++ A++ +D + L + G I
Sbjct: 90 AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDI 149
Query: 62 KEFAEEVA 69
E ++ A
Sbjct: 150 AEVLQKAA 157
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 70.5 bits (171), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 69/131 (52%), Gaps = 14/131 (10%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD+N DK+ +PL LAA G + V L++ A++ KD + LHL G H+
Sbjct: 25 GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREG--HL- 81
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
E+ V L G +N KDK G +PLH A+REGH+ +E L+ GA +N +
Sbjct: 82 ----EIVEVLLKAGAD-------VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQ 130
Query: 123 NNSNESPLHLA 133
+ ++P LA
Sbjct: 131 DKFGKTPFDLA 141
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 61/119 (51%), Gaps = 14/119 (11%)
Query: 17 LLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEG 76
LL AA G V L+ N A++ KD + LHL G H+ E+ V L G
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREG--HL-----EIVEVLLKAG 58
Query: 77 EASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
+N KDK G +PLH A+REGH+ +E L+ GA +N K+ +PLHLAAR
Sbjct: 59 AD-------VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAR 110
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%)
Query: 2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHI 61
GAD+N DK+ +PL LAA G + V L++ A++ +D + L + NG I
Sbjct: 90 AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDI 149
Query: 62 KEFAEEVA 69
E ++ A
Sbjct: 150 AEVLQKAA 157
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 68.9 bits (167), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 68/131 (51%), Gaps = 14/131 (10%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD+N D + R+PL AA G + V L+ A++ KD + R LH K
Sbjct: 27 GADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAA-------K 79
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
E +E+ + + +G +N KD G +PLHYA++EGH ++ LI+ GA +N
Sbjct: 80 EGHKEIVKLLISKGAD-------VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTS 132
Query: 123 NNSNESPLHLA 133
++ +PL LA
Sbjct: 133 DSDGRTPLDLA 143
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 14/119 (11%)
Query: 17 LLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEG 76
L+ AA G V L+ N A++ D + R LH KE +E+ + + +G
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAA-------KEGHKEIVKLLISKG 60
Query: 77 EASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
+N KD G +PLHYA++EGH ++ LI+ GA +N K++ +PLH AA+
Sbjct: 61 AD-------VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAK 112
Score = 32.0 bits (71), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNG 57
GAD+N D + R+PL AA G + V L+ A++ D + R L L +G
Sbjct: 93 GADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHG 147
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 66/122 (54%), Gaps = 14/122 (11%)
Query: 14 RSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFL 73
R+PL LAA G + V L+ A++ KD N R LHL NG H+ EV + L
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG--HL-----EVVKLLL 55
Query: 74 GEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLA 133
G +N KDK G +PLH A+R GH+ ++ L+ GA +N K+ + +PLHLA
Sbjct: 56 EAGAD-------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA 108
Query: 134 AR 135
AR
Sbjct: 109 AR 110
Score = 60.1 bits (144), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHI 61
GAD+N DK R+PL LAA G + V L+ A++ KD N R LHL N GH+
Sbjct: 24 AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN--GHL 81
Query: 62 KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGA 117
EV + L G +N KDK G +PLH A+R GH+ ++ L+ GA
Sbjct: 82 -----EVVKLLLEAGAD-------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 49/91 (53%), Gaps = 14/91 (15%)
Query: 45 NRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREG 104
N R LHL NG H+ EV + L G +N KDK G +PLH A+R G
Sbjct: 1 NGRTPLHLAARNG--HL-----EVVKLLLEAGAD-------VNAKDKNGRTPLHLAARNG 46
Query: 105 HIISLENLINLGACINLKNNSNESPLHLAAR 135
H+ ++ L+ GA +N K+ + +PLHLAAR
Sbjct: 47 HLEVVKLLLEAGADVNAKDKNGRTPLHLAAR 77
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 61/119 (51%), Gaps = 14/119 (11%)
Query: 17 LLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEG 76
LL AA G V L+ N A++ KD + LHL G H+ E+ V L G
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREG--HL-----EIVEVLLKAG 70
Query: 77 EASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
+N KDK G +PLH A+REGH+ +E L+ GA +N K+ +PLHLAAR
Sbjct: 71 AD-------VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAR 122
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 68/131 (51%), Gaps = 14/131 (10%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD+N DK+ +PL LAA G + V L++ A++ KD + LHL G H+
Sbjct: 37 GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREG--HL- 93
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
E+ V L G +N KDK G +PLH A+REGH+ +E L+ GA +N +
Sbjct: 94 ----EIVEVLLKAGAD-------VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQ 142
Query: 123 NNSNESPLHLA 133
+ ++ ++
Sbjct: 143 DKFGKTAFDIS 153
Score = 32.3 bits (72), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%)
Query: 2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHI 61
GAD+N DK+ +PL LAA G + V L++ A++ +D + + + NG +
Sbjct: 102 AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDL 161
Query: 62 KEF 64
E
Sbjct: 162 AEI 164
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 66/131 (50%), Gaps = 14/131 (10%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD+N D + R+PL AA G + V L+ A++ KD + R LH NG
Sbjct: 27 GADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENG----- 81
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
+EV + + +G +N KD G +PLH+A+ GH ++ LI+ GA +N
Sbjct: 82 --HKEVVKLLISKGAD-------VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTS 132
Query: 123 NNSNESPLHLA 133
++ +PL LA
Sbjct: 133 DSDGRTPLDLA 143
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 58/118 (49%), Gaps = 14/118 (11%)
Query: 17 LLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEG 76
L+ AA G V L+ N A++ D + R LH NG +EV + + +G
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENG-------HKEVVKLLISKG 60
Query: 77 EASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
+N KD G +PLH+A+ GH ++ LI+ GA +N K++ +PLH AA
Sbjct: 61 AD-------VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAA 111
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNG 57
GAD+N D + R+PL AA G + V L+ A++ D + R L L +G
Sbjct: 93 GADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHG 147
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 58.9 bits (141), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 62/131 (47%), Gaps = 14/131 (10%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD N D + R+PL AA G + V L+ A+ KD + R LH NG
Sbjct: 27 GADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENG----- 81
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
+E+ + L +G N KD G +PLHYA+ GH ++ L++ GA N
Sbjct: 82 --HKEIVKLLLSKGADP-------NAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTS 132
Query: 123 NNSNESPLHLA 133
++ +PL LA
Sbjct: 133 DSDGRTPLDLA 143
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 55/118 (46%), Gaps = 14/118 (11%)
Query: 17 LLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEG 76
L+ AA G V L+ N A+ D + R LH NG +E+ + L +G
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENG-------HKEIVKLLLSKG 60
Query: 77 EASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
N KD G +PLHYA+ GH ++ L++ GA N K++ +PLH AA
Sbjct: 61 ADP-------NAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAA 111
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 30/65 (46%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD N D + R+PL AA G + V L+ A+ D + R L L +G I
Sbjct: 93 GADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIV 152
Query: 63 EFAEE 67
+ E+
Sbjct: 153 KLLEK 157
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 64/131 (48%), Gaps = 14/131 (10%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD+N D + ++PL LAA G + V L+ A+ KD + + LHL NG
Sbjct: 27 GADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENG----- 81
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
+EV + L +G N KD G +PLH A+ GH ++ L++ GA N
Sbjct: 82 --HKEVVKLLLSQGADP-------NAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTS 132
Query: 123 NNSNESPLHLA 133
++ +PL LA
Sbjct: 133 DSDGRTPLDLA 143
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 58/119 (48%), Gaps = 14/119 (11%)
Query: 17 LLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEG 76
L+ AA G V L+ N A++ D + + LHL NG +EV + L +G
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENG-------HKEVVKLLLSQG 60
Query: 77 EASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
N KD G +PLH A+ GH ++ L++ GA N K++ ++PLHLAA
Sbjct: 61 ADP-------NAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAE 112
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 66/131 (50%), Gaps = 14/131 (10%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD+N +D +PL LAA G + V L+++ A++ D+ LHL + G H+
Sbjct: 37 GADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTG--HL- 93
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
E+ V L G +N D TG +PLH A+ EGH+ +E L+ GA +N +
Sbjct: 94 ----EIVEVLLKYGAD-------VNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQ 142
Query: 123 NNSNESPLHLA 133
+ ++ ++
Sbjct: 143 DKFGKTAFDIS 153
Score = 46.2 bits (108), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 15/118 (12%)
Query: 18 LLAASRGGWKT-VLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEG 76
LL A+R G V L+ N A++ D LHL ++G H+ E+ V L G
Sbjct: 18 LLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSG--HL-----EIVEVLLKHG 70
Query: 77 EASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
++ D G +PLH A+ GH+ +E L+ GA +N + + +PLHLAA
Sbjct: 71 AD-------VDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAA 121
Score = 31.2 bits (69), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNG 57
GAD+N D +PL LAA G + V L++ A++ +D + + + NG
Sbjct: 103 GADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNG 157
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 65/131 (49%), Gaps = 14/131 (10%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD N D R+PL +AA+ G + V L+RN A++ D N LHL GH+
Sbjct: 25 GADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAA--SLGHL- 81
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
E+ V L G +N KD TG +PL+ A+ GH+ +E L+ GA +N +
Sbjct: 82 ----EIVEVLLKYGAD-------VNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQ 130
Query: 123 NNSNESPLHLA 133
+ ++ ++
Sbjct: 131 DKFGKTAFDIS 141
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 56.2 bits (134), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 65/131 (49%), Gaps = 14/131 (10%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD+N D + +PL LAAS G + V L++N A++ D+ LHL GH+
Sbjct: 37 GADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAAT--GHL- 93
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
E+ V L G +N D G +PLH A++ GH+ +E L+ GA +N +
Sbjct: 94 ----EIVEVLLKHGAD-------VNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQ 142
Query: 123 NNSNESPLHLA 133
+ ++ ++
Sbjct: 143 DKFGKTAFDIS 153
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 58/119 (48%), Gaps = 14/119 (11%)
Query: 17 LLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEG 76
LL AA G V L+ N A++ D + LHL NG H+ E+ V L G
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNG--HL-----EIVEVLLKNG 70
Query: 77 EASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
+N D TG +PLH A+ GH+ +E L+ GA +N +N +PLHLAA+
Sbjct: 71 AD-------VNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAK 122
Score = 32.3 bits (72), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD+N D + +PL LAA G + V L+++ A++ +D + + + NG +
Sbjct: 103 GADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLA 162
Query: 63 EF 64
E
Sbjct: 163 EI 164
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 35/52 (67%)
Query: 83 QNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
+N LN+ D G SPLH+A REG +E LI GA IN+ N +++PLHLAA
Sbjct: 29 ENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAA 80
Score = 33.9 bits (76), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 50/133 (37%), Gaps = 47/133 (35%)
Query: 1 MTGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGH 60
M GA +NV+++ +PL LAAS G V L++ KA+I
Sbjct: 60 MRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI--------------------- 98
Query: 61 IKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACIN 120
N +NE G PLHYA G E+L+ GA ++
Sbjct: 99 -----------------------NAVNEH---GNVPLHYACFWGQDQVAEDLVANGALVS 132
Query: 121 LKNNSNESPLHLA 133
+ N E P+ A
Sbjct: 133 ICNKYGEMPVDKA 145
Score = 32.7 bits (73), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 84 NLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
N++N D T PLH A+ GH ++ L+ A IN N PLH A
Sbjct: 66 NVMNRGDDT---PLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYAC 113
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 35/52 (67%)
Query: 83 QNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
+N LN+ D G SPLH+A REG +E LI GA IN+ N +++PLHLAA
Sbjct: 24 ENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAA 75
Score = 33.9 bits (76), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 50/133 (37%), Gaps = 47/133 (35%)
Query: 1 MTGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGH 60
M GA +NV+++ +PL LAAS G V L++ KA+I
Sbjct: 55 MRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI--------------------- 93
Query: 61 IKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACIN 120
N +NE G PLHYA G E+L+ GA ++
Sbjct: 94 -----------------------NAVNEH---GNVPLHYACFWGQDQVAEDLVANGALVS 127
Query: 121 LKNNSNESPLHLA 133
+ N E P+ A
Sbjct: 128 ICNKYGEMPVDKA 140
Score = 32.7 bits (73), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 84 NLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
N++N D T PLH A+ GH ++ L+ A IN N PLH A
Sbjct: 61 NVMNRGDDT---PLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYAC 108
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 66/131 (50%), Gaps = 14/131 (10%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD+N D + +PL LAA G + V L+++ A++ +D + LHL N GH+
Sbjct: 37 GADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADN--GHL- 93
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
E+ V L G +N +D G +PLH A+ GH+ +E L+ GA +N +
Sbjct: 94 ----EIVEVLLKYGAD-------VNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQ 142
Query: 123 NNSNESPLHLA 133
+ ++ ++
Sbjct: 143 DKFGKTAFDIS 153
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 53/118 (44%), Gaps = 14/118 (11%)
Query: 17 LLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEG 76
LL AA G V L+ N A++ D LHL G E+ V L G
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIG-------HPEIVEVLLKHG 70
Query: 77 EASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
+N +D G +PLH A+ GH+ +E L+ GA +N ++ +PLHLAA
Sbjct: 71 AD-------VNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAA 121
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 35/66 (53%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD+N D +PL LAA RG + V L+++ A++ +D + + + NG +
Sbjct: 103 GADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLA 162
Query: 63 EFAEEV 68
E +++
Sbjct: 163 EILQKL 168
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 64/131 (48%), Gaps = 14/131 (10%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD+N D ++PL LAA +G + V L+++ A++ D LHL L GH+
Sbjct: 37 GADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALY--GHL- 93
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
E+ V L G +N D G +PLH A+ GH+ +E L+ GA +N +
Sbjct: 94 ----EIVEVLLKNGAD-------VNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQ 142
Query: 123 NNSNESPLHLA 133
+ ++ ++
Sbjct: 143 DKFGKTAFDIS 153
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 59/118 (50%), Gaps = 15/118 (12%)
Query: 18 LLAASRGGWKT-VLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEG 76
LL A+R G V L+ N A++ +D + + LHL + G H+ E+ V L G
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKG--HL-----EIVEVLLKHG 70
Query: 77 EASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
+N DK G +PLH A+ GH+ +E L+ GA +N + +PLHLAA
Sbjct: 71 AD-------VNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAA 121
Score = 29.3 bits (64), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 33/66 (50%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD+N D +PL LAA G + V L++ A++ +D + + + NG +
Sbjct: 103 GADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLA 162
Query: 63 EFAEEV 68
E +++
Sbjct: 163 EILQKL 168
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 49/91 (53%), Gaps = 14/91 (15%)
Query: 45 NRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREG 104
N R LHL NG H+ EV + L G +N KDK G +PLH A+R G
Sbjct: 1 NGRTPLHLAARNG--HL-----EVVKLLLEAGAD-------VNAKDKNGRTPLHLAARNG 46
Query: 105 HIISLENLINLGACINLKNNSNESPLHLAAR 135
H+ ++ L+ GA +N K+ + +PLHLAAR
Sbjct: 47 HLEVVKLLLEAGADVNAKDKNGRTPLHLAAR 77
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 53/104 (50%), Gaps = 14/104 (13%)
Query: 14 RSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFL 73
R+PL LAA G + V L+ A++ KD N R LHL NG H+ EV + L
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG--HL-----EVVKLLL 55
Query: 74 GEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGA 117
G +N KDK G +PLH A+R GH+ ++ L+ GA
Sbjct: 56 EAGAD-------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 31/56 (55%)
Query: 2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNG 57
GAD+N DK R+PL LAA G + V L+ A++ KD N R LHL NG
Sbjct: 24 AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG 79
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 58/119 (48%), Gaps = 14/119 (11%)
Query: 17 LLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEG 76
LL AA G V L+ N A++ +D LHL GH+ E+ V L G
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAA--HFGHL-----EIVEVLLKNG 70
Query: 77 EASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
+N KD G +PLH A+R GH+ +E L+ GA +N ++ +PLHLAA+
Sbjct: 71 AD-------VNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAK 122
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 14/131 (10%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD+N D +PL LAA G + V L++N A++ KD LHL G H+
Sbjct: 37 GADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRG--HL- 93
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
E+ V L G +N D G +PLH A++ GH+ +E L+ GA +N +
Sbjct: 94 ----EIVEVLLKNGAD-------VNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQ 142
Query: 123 NNSNESPLHLA 133
+ ++ ++
Sbjct: 143 DKFGKTAFDIS 153
Score = 33.9 bits (76), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD+N D +PL LAA RG + V L++N A++ +D + + + NG +
Sbjct: 103 GADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLA 162
Query: 63 EFAEEV 68
E +++
Sbjct: 163 EILQKL 168
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 14/131 (10%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD+N D +PL LAA G + V L++ A++ D LHL NG H+
Sbjct: 37 GADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNG--HL- 93
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
E+ V L G +N KD G +PLH A+ +GH+ +E L+ GA +N +
Sbjct: 94 ----EIVEVLLKHGAD-------VNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQ 142
Query: 123 NNSNESPLHLA 133
+ ++ ++
Sbjct: 143 DKFGKTAFDIS 153
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 54/118 (45%), Gaps = 14/118 (11%)
Query: 17 LLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEG 76
LL AA G V L+ N A++ D LHL G H+ E+ V L G
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTG--HL-----EIVEVLLKYG 70
Query: 77 EASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
+N D G +PLH A+ GH+ +E L+ GA +N K+ +PLHLAA
Sbjct: 71 AD-------VNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAA 121
Score = 30.4 bits (67), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 34/66 (51%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD+N D E +PL LAA G + V L++ A++ +D + + + NG +
Sbjct: 103 GADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLA 162
Query: 63 EFAEEV 68
E +++
Sbjct: 163 EILQKL 168
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 56/118 (47%), Gaps = 14/118 (11%)
Query: 17 LLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEG 76
LL AA+ G V L+ N A++ D N LHL NG E+ V L G
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANG-------QLEIVEVLLKNG 62
Query: 77 EASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
+N D G +PLH A+ +GH+ +E L+ GA +N + + +PLHLAA
Sbjct: 63 AD-------VNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAA 113
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 14/121 (11%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD+N D +PL LAA+ G + V L++N A++ D LHL + GH+
Sbjct: 29 GADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYD--GHL- 85
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
E+ V L G +N D+ G +PLH A+ G + +E L+ GA +N +
Sbjct: 86 ----EIVEVLLKHGAD-------VNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQ 134
Query: 123 N 123
+
Sbjct: 135 D 135
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 62/131 (47%), Gaps = 14/131 (10%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD+N D +PL LAA G + V L++N A++ D + LHL GH+
Sbjct: 37 GADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKR--GHL- 93
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
E+ V L G +N D G +PLH A+ GH+ +E L+ GA +N +
Sbjct: 94 ----EIVEVLLKYGAD-------VNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQ 142
Query: 123 NNSNESPLHLA 133
+ ++ ++
Sbjct: 143 DKFGKTAFDIS 153
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 57/118 (48%), Gaps = 15/118 (12%)
Query: 18 LLAASRGGWKT-VLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEG 76
LL A+R G V L+ N A++ +D LHL G H+ E+ V L G
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVG--HL-----EIVEVLLKNG 70
Query: 77 EASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
+N D +G +PLH A++ GH+ +E L+ GA +N + +PLHLAA
Sbjct: 71 AD-------VNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAA 121
Score = 45.8 bits (107), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 86 LNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
+N +D G +PLH A+R GH+ +E L+ GA +N + S +PLHLAA+
Sbjct: 40 VNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAK 89
Score = 29.3 bits (64), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 100 ASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
A+R G + L+ GA +N ++ ++PLHLAAR
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAAR 56
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD+N D +PL LAA G + V L++ A++ +D + + + NG +
Sbjct: 103 GADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLA 162
Query: 63 EF 64
E
Sbjct: 163 EI 164
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 56/119 (47%), Gaps = 14/119 (11%)
Query: 17 LLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEG 76
LL AA G V L+ N A++ D LHL+V NG I E + AA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAAD----- 72
Query: 77 EASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
+N DK+G +PLH A+ GH+ +E L+ GA +N + +PLHLAA
Sbjct: 73 ---------VNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAE 122
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 14/131 (10%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD+N D +PL L + G + + L++ A++ D + LHL G H+
Sbjct: 37 GADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRG--HL- 93
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
E+ V L G +N D G +PLH A+ +GH+ +E L+ GA +N +
Sbjct: 94 ----EIVEVLLKYGAD-------VNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQ 142
Query: 123 NNSNESPLHLA 133
+ ++ ++
Sbjct: 143 DKFGKTAFDIS 153
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 35/66 (53%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD+N +D + +PL LAA G + V L++ A++ +D + + + NG +
Sbjct: 103 GADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLA 162
Query: 63 EFAEEV 68
E +++
Sbjct: 163 EILQKL 168
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 14/131 (10%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD+N D +PL LAA G + V L++N A++ D LHL GH+
Sbjct: 37 GADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAA--HFGHL- 93
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
E+ V L G +N KD G +PLH A+ GH+ +E L+ GA +N +
Sbjct: 94 ----EIVEVLLKNGAD-------VNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQ 142
Query: 123 NNSNESPLHLA 133
+ ++ ++
Sbjct: 143 DKFGKTAFDIS 153
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 57/118 (48%), Gaps = 14/118 (11%)
Query: 17 LLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEG 76
LL AA G V L+ N A++ D+ LHL GH+ E+ V L G
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAY--WGHL-----EIVEVLLKNG 70
Query: 77 EASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
+N D G +PLH A+ GH+ +E L+ GA +N K+++ +PLHLAA
Sbjct: 71 AD-------VNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAA 121
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 35/66 (53%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD+N D +PL LAA+RG + V L++ A++ +D + + + NG +
Sbjct: 103 GADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNEDLA 162
Query: 63 EFAEEV 68
E +++
Sbjct: 163 EILQKL 168
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 14/131 (10%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD+N D +PL LAA+ G + V L+++ A++ DI LHL L GH+
Sbjct: 37 GADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALI--GHL- 93
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
E+ V L G +N D G +PLH A+ GH+ +E L+ GA +N +
Sbjct: 94 ----EIVEVLLKHGAD-------VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQ 142
Query: 123 NNSNESPLHLA 133
+ ++ ++
Sbjct: 143 DKFGKTAFDIS 153
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 56/118 (47%), Gaps = 15/118 (12%)
Query: 18 LLAASRGGWKT-VLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEG 76
LL A+R G V L+ N A++ D + LHL G H+ E+ V L G
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYG--HL-----EIVEVLLKHG 70
Query: 77 EASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
+N D G +PLH A+ GH+ +E L+ GA +N + ++PLHLAA
Sbjct: 71 AD-------VNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAA 121
Score = 29.3 bits (64), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 35/66 (53%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD+N +D +PL LAA G + V L+++ A++ +D + + + NG +
Sbjct: 103 GADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLA 162
Query: 63 EFAEEV 68
E +++
Sbjct: 163 EILQKL 168
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 14/131 (10%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD+N D +PL LAA G + V L+++ A++ D+ LHL GH+
Sbjct: 37 GADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAY--WGHL- 93
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
E+ V L G +N D G +PLH A++ G++ +E L+ GA +N +
Sbjct: 94 ----EIVEVLLKNGAD-------VNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQ 142
Query: 123 NNSNESPLHLA 133
+ ++ ++
Sbjct: 143 DKFGKTAFDIS 153
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 15/119 (12%)
Query: 18 LLAASRGGWKT-VLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEG 76
LL A+R G V L+ N A++ D LHL +G H+ E+ V L G
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSG--HL-----EIVEVLLKHG 70
Query: 77 EASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
++ D G +PLH A+ GH+ +E L+ GA +N ++ +PLHLAA+
Sbjct: 71 AD-------VDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAK 122
Score = 32.3 bits (72), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 36/66 (54%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD+N +D + +PL LAA G + V L+++ A++ +D + + + NG +
Sbjct: 103 GADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLA 162
Query: 63 EFAEEV 68
E +++
Sbjct: 163 EILQKL 168
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 14/131 (10%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD+N D +PL LAA+ G + V L+++ A++ DI LHL L GH+
Sbjct: 37 GADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALI--GHL- 93
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
E+ V L G +N D G +PLH A+ GH+ +E L+ GA +N +
Sbjct: 94 ----EIVEVLLKHGAD-------VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQ 142
Query: 123 NNSNESPLHLA 133
+ ++ ++
Sbjct: 143 DKFGKTAFDIS 153
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 56/118 (47%), Gaps = 15/118 (12%)
Query: 18 LLAASRGGWKT-VLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEG 76
LL A+R G V L+ N A++ D + LHL G H+ E+ V L G
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYG--HL-----EIVEVLLKHG 70
Query: 77 EASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
+N D G +PLH A+ GH+ +E L+ GA +N + ++PLHLAA
Sbjct: 71 AD-------VNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAA 121
Score = 29.3 bits (64), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 35/66 (53%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD+N +D +PL LAA G + V L+++ A++ +D + + + NG +
Sbjct: 103 GADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLA 162
Query: 63 EFAEEV 68
E +++
Sbjct: 163 EILQKL 168
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 63/133 (47%), Gaps = 13/133 (9%)
Query: 2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHI 61
GA+++ +++R+PL+ AA + V L++ A + KD LHL G
Sbjct: 33 AGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGH--- 89
Query: 62 KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINL 121
EV L G+ +N +D G +P+ +A+ H+ ++ L++ G+ IN+
Sbjct: 90 ----YEVVQYLLSNGQMD------VNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINI 139
Query: 122 KNNSNESPLHLAA 134
++N LH AA
Sbjct: 140 RDNEENICLHWAA 152
Score = 32.3 bits (72), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 16/131 (12%)
Query: 5 DLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNI-LHLLVLNGGGHIKE 63
D+N D +P++ A V L+ ++I ++D N NI LH +G
Sbjct: 103 DVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRD-NEENICLHWAAFSG------ 155
Query: 64 FAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKN 123
++A + L + L+ + G SPLH A+RE + ++ + + LKN
Sbjct: 156 -CVDIAEILLA-------AKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKN 207
Query: 124 NSNESPLHLAA 134
E+PL A+
Sbjct: 208 KEGETPLQCAS 218
Score = 29.3 bits (64), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 95 SPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
SPLH A+ GH+ L+ GA I+ + +PL AA
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAE 53
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 95 SPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
+PL A+ H+ +++ LI GA ++ K+ + LHLAA+
Sbjct: 46 TPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAK 86
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 61/131 (46%), Gaps = 14/131 (10%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD+N D +PL LAA G + V L++N A++ D LHL G H+
Sbjct: 37 GADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRG--HL- 93
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
EV V L G +N D G +PLH A+ GH+ +E L+ GA +N +
Sbjct: 94 ----EVVEVLLKNGAD-------VNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQ 142
Query: 123 NNSNESPLHLA 133
+ ++ ++
Sbjct: 143 DKFGKTAFDIS 153
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 55/118 (46%), Gaps = 14/118 (11%)
Query: 17 LLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEG 76
LL AA G V L+ N A++ D LHL G H+ E+ V L G
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFG--HL-----EIVEVLLKNG 70
Query: 77 EASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
+N D G +PLH A+ GH+ +E L+ GA +N +++ +PLHLAA
Sbjct: 71 AD-------VNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAA 121
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 35/66 (53%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD+N D +PL LAA+ G + V L+++ A++ +D + + + NG +
Sbjct: 103 GADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLA 162
Query: 63 EFAEEV 68
E +++
Sbjct: 163 EILQKL 168
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 86 LNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
+N D G +PLH A++ GH+ +E L+ GA +N ++ +PLHLAA
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAA 88
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 50/131 (38%), Gaps = 47/131 (35%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD+N +D +PL LAA RG + V L+++ A++
Sbjct: 37 GADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADV----------------------- 73
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
N D G +PLH A+ GH+ +E L+ GA +N +
Sbjct: 74 ------------------------NASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQ 109
Query: 123 NNSNESPLHLA 133
+ ++ ++
Sbjct: 110 DKFGKTAFDIS 120
Score = 30.0 bits (66), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 34/66 (51%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD+N D R+PL LAA+ G + V L+ A++ +D + + + NG +
Sbjct: 70 GADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLA 129
Query: 63 EFAEEV 68
E +++
Sbjct: 130 EILQKL 135
Score = 26.9 bits (58), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 100 ASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
A+R G + L+ GA +N +++ +PLHLAA+
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAK 56
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 33/49 (67%)
Query: 86 LNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
+N D+ G +PLH A++ GH+ +E L+ GA +N ++N +PLHLAA
Sbjct: 40 VNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAA 88
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 51/131 (38%), Gaps = 47/131 (35%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD+N LD++ +PL LAA G + V L++ A++
Sbjct: 37 GADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADV----------------------- 73
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
N +D G +PLH A+ GH+ +E L+ GA +N +
Sbjct: 74 ------------------------NAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQ 109
Query: 123 NNSNESPLHLA 133
+ ++ ++
Sbjct: 110 DKFGKTAFDIS 120
Score = 29.6 bits (65), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 35/66 (53%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD+N D +PL LAA RG + V L+++ A++ +D + + + NG +
Sbjct: 70 GADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLA 129
Query: 63 EFAEEV 68
E +++
Sbjct: 130 EILQKL 135
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%)
Query: 89 KDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
KD+TG + +H A+R G + +L+ L+ A +N+++N PLHLAA+
Sbjct: 66 KDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAK 112
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 4 ADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKAN 38
AD+N+ D E PL LAA G + V LV++ A+
Sbjct: 94 ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS 128
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 86 LNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
+N D G +PLH A++ GH+ +E L+ GA +N ++ +PLHLAA
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAA 88
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 36/68 (52%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD+N +D +PL LAA RG + V L+++ A++ +DI R LHL G I
Sbjct: 37 GADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIV 96
Query: 63 EFAEEVAA 70
E E A
Sbjct: 97 EVLLEYGA 104
Score = 28.9 bits (63), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 34/66 (51%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD+N D R+PL LAA+ G + V L+ A++ +D + + + NG +
Sbjct: 70 GADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLA 129
Query: 63 EFAEEV 68
E +++
Sbjct: 130 EILQKL 135
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 100 ASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
A+R G + L+ GA +N +++ +PLHLAA+
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAK 56
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%)
Query: 89 KDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
KD+TG + +H A+R G + +L+ L+ A +N+++N PLHLAA+
Sbjct: 66 KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAK 112
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 4 ADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKAN 38
AD+N+ D E PL LAA G + V LV++ A+
Sbjct: 94 ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS 128
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%)
Query: 89 KDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
KD+TG + +H A+R G + +L+ L+ A +N+++N PLHLAA+
Sbjct: 66 KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAK 112
Score = 27.3 bits (59), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 4 ADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKAN 38
AD+N+ D E PL LAA G + V LV++ A+
Sbjct: 94 ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS 128
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 55/118 (46%), Gaps = 14/118 (11%)
Query: 17 LLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEG 76
LL AA G V L+ N A++ +D + LHL NG H+ E+ V L G
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNG--HL-----EIVEVLLKNG 70
Query: 77 EASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
+N D G +PL A+ GH+ +E L+ GA +N + +PLHLAA
Sbjct: 71 AD-------VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAA 121
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 14/131 (10%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD+N D +PL LAA G + V L++N A++ D L L L G H+
Sbjct: 37 GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFG--HL- 93
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
E+ V L G +N D G +PLH A+ GH+ +E L+ GA +N +
Sbjct: 94 ----EIVEVLLKNGAD-------VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQ 142
Query: 123 NNSNESPLHLA 133
+ ++ ++
Sbjct: 143 DKFGKTAFDIS 153
Score = 32.3 bits (72), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD+N D E +PL LAA G + V L++N A++ +D + + + NG +
Sbjct: 103 GADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLA 162
Query: 63 EFAEEV 68
E +++
Sbjct: 163 EILQKL 168
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 86 LNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
+N D G +PLH A++ GH+ +E L+ GA +N + +PLHLAA
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAA 88
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 35/68 (51%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD+N +D +PL LAA RG + V L+++ A++ DI R LHL G I
Sbjct: 37 GADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIV 96
Query: 63 EFAEEVAA 70
E E A
Sbjct: 97 EVLLEYGA 104
Score = 28.9 bits (63), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 34/66 (51%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD+N D R+PL LAA+ G + V L+ A++ +D + + + NG +
Sbjct: 70 GADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLA 129
Query: 63 EFAEEV 68
E +++
Sbjct: 130 EILQKL 135
Score = 26.9 bits (58), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 100 ASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
A+R G + L+ GA +N +++ +PLHLAA+
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAK 56
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 32/49 (65%)
Query: 87 NEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
N +D +G SP+H A+R G + +L+ L+ GA +N+ + + P+HLA +
Sbjct: 68 NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQ 116
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 15/102 (14%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GA NV D SP+ AA G T+ LV + A++ + D +HL V G +
Sbjct: 64 GASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVV 123
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREG 104
F +AA ++ L+ +D G +PL A + G
Sbjct: 124 SF---LAA------------ESDLHRRDARGLTPLELALQRG 150
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 86 LNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLA 133
+N D TG P+H A +EGH ++ + + + ++ ++ +PL LA
Sbjct: 100 VNVPDGTGALPIHLAVQEGH-TAVVSFLAAESDLHRRDARGLTPLELA 146
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%)
Query: 89 KDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
KD+TG + +H A+R G + +L+ L+ A +N+++N PLHLAA+
Sbjct: 66 KDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAK 112
Score = 27.3 bits (59), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 4 ADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKAN 38
AD+N+ D E PL LAA G + V LV++ A+
Sbjct: 94 ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS 128
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 32/49 (65%)
Query: 87 NEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
N +D +G SP+H A+R G + +L+ L+ GA +N+ + + P+HLA +
Sbjct: 62 NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQ 110
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 15/102 (14%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GA NV D SP+ AA G T+ LV + A++ + D +HL V G +
Sbjct: 58 GASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVV 117
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREG 104
F +AA ++ L+ +D G +PL A + G
Sbjct: 118 SF---LAA------------ESDLHRRDARGLTPLELALQRG 144
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 86 LNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLA 133
+N D TG P+H A +EGH ++ + + + ++ ++ +PL LA
Sbjct: 94 VNVPDGTGALPIHLAVQEGH-TAVVSFLAAESDLHRRDARGLTPLELA 140
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 86 LNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLA 133
+N KDK G +PLH A+REGH+ +E L+ GA +N ++ ++ ++
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDIS 75
Score = 33.5 bits (75), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD+N DK+ +PL LAA G + V L++ A++ +D + + + NG +
Sbjct: 25 GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLA 84
Query: 63 EFAEEVA 69
E ++ A
Sbjct: 85 EILQKAA 91
Score = 30.4 bits (67), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 100 ASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
A+R G + L+ GA +N K+ +PLHLAAR
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAR 44
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 28/41 (68%)
Query: 95 SPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
+PLH AS GH+ ++NL+ GA N+ N E+PLH+AAR
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAAR 56
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 61/133 (45%), Gaps = 14/133 (10%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
G N + +PL LAA G + V L+ +AN L + + LHL+ GH+
Sbjct: 235 GGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQE--GHVP 292
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
VA V + G +++ + G +PLH AS G+I ++ L+ A +N K
Sbjct: 293 -----VADVLIKHGV-------MVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAK 340
Query: 123 NNSNESPLHLAAR 135
SPLH AA+
Sbjct: 341 TKLGYSPLHQAAQ 353
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 14/133 (10%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GA NV + + +PL +AA G + L++NKA + K + + LH G ++
Sbjct: 37 GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMV 96
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
+ L E A+ N G +PLH A+REGH+ ++ L+ A
Sbjct: 97 KL--------LLENNANP------NLATTAGHTPLHIAAREGHVETVLALLEKEASQACM 142
Query: 123 NNSNESPLHLAAR 135
+PLH+AA+
Sbjct: 143 TKKGFTPLHVAAK 155
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 57/130 (43%), Gaps = 14/130 (10%)
Query: 4 ADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKE 63
A +N K+ ++PL AA G V L+ N AN L LH+ G H+
Sbjct: 71 AKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREG--HV-- 126
Query: 64 FAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKN 123
E V A+ E EASQ K G +PLH A++ G + E L+ A N
Sbjct: 127 --ETVLALL--EKEASQACMT------KKGFTPLHVAAKYGKVRVAELLLERDAHPNAAG 176
Query: 124 NSNESPLHLA 133
+ +PLH+A
Sbjct: 177 KNGLTPLHVA 186
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 61/132 (46%), Gaps = 14/132 (10%)
Query: 4 ADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKE 63
A+ N+ +K +PL L A G L+++ +++ R L V + G+IK
Sbjct: 269 ANGNLGNKSGLTPLHLVAQEGHVPVADVLIKH--GVMVDATTRMGYTPLHVASHYGNIKL 326
Query: 64 FAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKN 123
FL + +A +N K K G SPLH A+++GH + L+ GA N +
Sbjct: 327 VK------FLLQHQAD------VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVS 374
Query: 124 NSNESPLHLAAR 135
+ +PL +A R
Sbjct: 375 SDGTTPLAIAKR 386
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 14/121 (11%)
Query: 15 SPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLG 74
+PL +A+ G V L++ A+ + ++ LH+ G + A +L
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEV--------AKYLL 67
Query: 75 EGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
+ +A +N K K +PLH A+R GH ++ L+ A NL + +PLH+AA
Sbjct: 68 QNKAK------VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAA 121
Query: 135 R 135
R
Sbjct: 122 R 122
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 14/121 (11%)
Query: 15 SPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLG 74
+PL +AA + + +L++ + + + LHL G AE VA +
Sbjct: 214 TPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEG------HAEMVALLLSK 267
Query: 75 EGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
+ + G +K+G +PLH ++EGH+ + LI G ++ +PLH+A+
Sbjct: 268 QANGNLG--------NKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVAS 319
Query: 135 R 135
Sbjct: 320 H 320
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 86 LNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
+N D+ G +PLH A+ H+ +E L+ GA +N +N +PLHLAA
Sbjct: 40 VNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAA 88
Score = 31.6 bits (70), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 14/117 (11%)
Query: 17 LLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEG 76
LL AA G V L+ N A++ D LHL H+ E+ V L G
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAA--DYDHL-----EIVEVLLKHG 70
Query: 77 EASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLA 133
+N D G +PLH A+ GH+ +E L+ GA +N ++ ++ ++
Sbjct: 71 AD-------VNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 120
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNG 57
GAD+N D++ +PL LAA + V L+++ A++ D + LHL L G
Sbjct: 37 GADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFG 91
Score = 29.6 bits (65), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 35/66 (53%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD+N D + +PL LAA G + V L+++ A++ +D + + + NG +
Sbjct: 70 GADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLA 129
Query: 63 EFAEEV 68
E +++
Sbjct: 130 EILQKL 135
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%)
Query: 86 LNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
+N D G +PLH A+ GH+ +E L+ GA +N N+ +PLHLAA
Sbjct: 40 VNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAA 88
Score = 30.8 bits (68), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 14/117 (11%)
Query: 17 LLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEG 76
LL AA G V L N A++ D LHL + G H+ E+ V L G
Sbjct: 18 LLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLG--HL-----EIVEVLLKNG 70
Query: 77 EASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLA 133
+N TG +PLH A+ H+ +E L+ GA +N ++ ++ ++
Sbjct: 71 AD-------VNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDIS 120
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHL 52
GAD+N D +PL LAA G + V L++N A++ R LHL
Sbjct: 37 GADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHL 86
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 33/66 (50%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD+N R+PL LAA + V L+++ A++ +D + + + NG +
Sbjct: 70 GADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLA 129
Query: 63 EFAEEV 68
E +++
Sbjct: 130 EILQKL 135
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 32/49 (65%)
Query: 87 NEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
N +D +G SP+H A+R G + +L+ L+ GA +N +++ P+HLA R
Sbjct: 68 NVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIR 116
Score = 30.0 bits (66), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 15/102 (14%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GA NV D SP+ AA G T+ LV + A++ D +HL + G +
Sbjct: 64 GASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVV 123
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREG 104
F ++ L+ +D +G +PL A + G
Sbjct: 124 SFLAP---------------ESDLHHRDASGLTPLELARQRG 150
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 86 LNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLA 133
+N D TG P+H A REGH S+ + + + ++ ++ S +PL LA
Sbjct: 100 VNALDSTGSLPIHLAIREGH-SSVVSFLAPESDLHHRDASGLTPLELA 146
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 32/49 (65%)
Query: 87 NEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
N +D +G SP+H A+R G + +L+ L+ GA +N +++ P+HLA R
Sbjct: 70 NVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIR 118
Score = 30.0 bits (66), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 15/102 (14%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GA NV D SP+ AA G T+ LV + A++ D +HL + G +
Sbjct: 66 GASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVV 125
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREG 104
F ++ L+ +D +G +PL A + G
Sbjct: 126 SFLAP---------------ESDLHHRDASGLTPLELARQRG 152
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 86 LNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLA 133
+N D TG P+H A REGH S+ + + + ++ ++ S +PL LA
Sbjct: 102 VNALDSTGSLPIHLAIREGH-SSVVSFLAPESDLHHRDASGLTPLELA 148
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 91 KTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
K G +PLH A++ GH ++ L++ GA +N ++ +PLHLAA+
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAK 51
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%)
Query: 86 LNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
+N + K G +PLH A++ GH ++ L+ GA +N ++ +P HLA +
Sbjct: 35 VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKK 84
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 14/112 (12%)
Query: 11 KEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAA 70
K+ +PL AA G + V L+ A++ + + LHL NG E+
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNG-------HAEIVK 59
Query: 71 VFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
+ L +G +N + K G +P H A + GH ++ L GA +N +
Sbjct: 60 LLLAKGAD-------VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNAR 104
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNG 57
GAD+N K+ +PL LAA G + V L+ A++ + + HL NG
Sbjct: 32 GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNG 86
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%)
Query: 89 KDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
KD+TG + +H A+R G + +L+ L+ A +N+++N PLHLAA+
Sbjct: 66 KDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAK 112
Score = 27.3 bits (59), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 4 ADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKAN 38
AD+N+ D E PL LAA G + V LV++ A+
Sbjct: 94 ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS 128
Score = 25.4 bits (54), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 11/122 (9%)
Query: 1 MTGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGH 60
+ GA+ ++ D+ + + AA G T+ TL+ N+A++ ++D LHL G
Sbjct: 58 LRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLR 117
Query: 61 IKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACIN 120
+ EF + A +G N K T C R ++SL G N
Sbjct: 118 VVEFLVKHTASNVGH----------RNHKGDTACDLARLYGRN-EVVSLMQANGAGGATN 166
Query: 121 LK 122
L+
Sbjct: 167 LQ 168
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 86 LNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
+N +DK G +PLH A+ H+ +E L+ GA +N + E+PLHL A
Sbjct: 40 VNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVA 88
Score = 32.3 bits (72), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 15/117 (12%)
Query: 18 LLAASRGGWKT-VLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEG 76
LL A+R G V L+ N A++ +D LHL +N H+ E+ V L G
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMND--HL-----EIVEVLLKNG 70
Query: 77 EASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLA 133
I D G +PLH + GH+ +E L+ GA +N ++ ++ ++
Sbjct: 71 ADVNAI-------DAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 120
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNG 57
GAD+N DK +PL LAA + V L++N A++ D LHL+ + G
Sbjct: 37 GADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYG 91
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 34/66 (51%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD+N +D +PL L A G + V L+++ A++ +D + + + NG +
Sbjct: 70 GADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLA 129
Query: 63 EFAEEV 68
E +++
Sbjct: 130 EILQKL 135
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%)
Query: 87 NEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
N KD G +PLH A GH+ +E L+ A +N N+SPLH AA+
Sbjct: 37 NVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAK 85
Score = 30.8 bits (68), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 81 GIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLA 133
GI N + G + LH AS +G I S+E L+ G+ N+K+++ +PLH A
Sbjct: 1 GIDPFTNHR---GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEA 50
Score = 25.8 bits (55), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 14/101 (13%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
G+D NV D +PL A + G K V L+++KA + + LH N GH+
Sbjct: 33 GSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKN--GHV- 89
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASRE 103
++ + L G AS+ N+ G P+ Y E
Sbjct: 90 ----DIVKLLLSYG-ASRNAVNIF------GLRPVDYTDDE 119
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 85 LLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKN 123
L+N SPLH A++ GH+ ++ L++ GA N N
Sbjct: 68 LVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVN 106
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 86 LNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
+N KD+ G +PL+ A+ GH+ +E L+ GA +N + +PLHLAA
Sbjct: 40 VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAA 88
Score = 32.3 bits (72), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 15/117 (12%)
Query: 18 LLAASRGGWKT-VLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEG 76
LL A+R G V L+ N A++ KD + L + GH+ E+ V L G
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKD--EYGLTPLYLATAHGHL-----EIVEVLLKNG 70
Query: 77 EASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLA 133
+N D G +PLH A+ GH+ E L+ GA +N ++ ++ ++
Sbjct: 71 AD-------VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDIS 120
Score = 32.3 bits (72), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 14/95 (14%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD+N D+ +PL LA + G + V L++N A++ D LHL GH+
Sbjct: 37 GADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFI--GHL- 93
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPL 97
E+A V L G +N +DK G +
Sbjct: 94 ----EIAEVLLKHGAD-------VNAQDKFGKTAF 117
Score = 26.6 bits (57), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 34/66 (51%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD+N +D +PL LAA G + L+++ A++ +D + + + NG +
Sbjct: 70 GADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLA 129
Query: 63 EFAEEV 68
E +++
Sbjct: 130 EILQKL 135
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 90 DKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
D G SPLH A++ GH + E L+ G + + + +PLH+AA
Sbjct: 31 DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAA 75
Score = 32.3 bits (72), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 87 NEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLA 133
+ + K +PLH A+ EGH +E L+ GA +N K+ + LH A
Sbjct: 61 DARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWA 107
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 11 KEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILH 51
K R+PL +AAS G V L+++ A++ KD+ + LH
Sbjct: 65 KVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALH 105
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 39.7 bits (91), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%)
Query: 83 QNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
++L D+ + LH+A GH +E L+ LG +N K+++ SPLH+AA
Sbjct: 30 KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAA 81
Score = 39.3 bits (90), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 58/136 (42%), Gaps = 20/136 (14%)
Query: 1 MTGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGG-- 58
+ GA +N +++ +PL AAS+ + + L+ AN KD +H G
Sbjct: 94 VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLK 153
Query: 59 -GHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGA 117
HI F + AS IQ D G +PLH A E + + L+ GA
Sbjct: 154 MVHILLFYK-----------ASTNIQ------DTEGNTPLHLACDEERVEEAKFLVTQGA 196
Query: 118 CINLKNNSNESPLHLA 133
I ++N ++PL +A
Sbjct: 197 SIYIENKEEKTPLQVA 212
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 86 LNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
+N+KD G SPLH A+ G ++ L+ GA +N N + +PLH AA
Sbjct: 66 VNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAA 114
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 14/131 (10%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
G +N D SPL +AAS G + V L+ A++ + N LH I
Sbjct: 63 GVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEI- 121
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
AV L EG A+ + KD + +H A+ +G++ + L+ A N++
Sbjct: 122 -------AVMLLEGGANP------DAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQ 168
Query: 123 NNSNESPLHLA 133
+ +PLHLA
Sbjct: 169 DTEGNTPLHLA 179
Score = 32.3 bits (72), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 16/126 (12%)
Query: 10 DKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVA 69
D++ R+ L A S G + V L++ + KD + LH+ G +E+
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAG-------RDEIV 89
Query: 70 AVFLGEGEASQGIQNLLNEKDKTGCSPLHY-ASREGHIISLENLINLGACINLKNNSNES 128
L +G +N ++ GC+PLHY AS+ H I++ L+ GA + K++ + +
Sbjct: 90 KALLVKGAH-------VNAVNQNGCTPLHYAASKNRHEIAV-MLLEGGANPDAKDHYDAT 141
Query: 129 PLHLAA 134
+H AA
Sbjct: 142 AMHRAA 147
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 39.7 bits (91), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%)
Query: 83 QNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
++L D+ + LH+A GH +E L+ LG +N K+++ SPLH+AA
Sbjct: 30 KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAA 81
Score = 39.3 bits (90), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 58/136 (42%), Gaps = 20/136 (14%)
Query: 1 MTGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGG-- 58
+ GA +N +++ +PL AAS+ + + L+ AN KD +H G
Sbjct: 94 VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLK 153
Query: 59 -GHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGA 117
HI F + AS IQ D G +PLH A E + + L+ GA
Sbjct: 154 MVHILLFYK-----------ASTNIQ------DTEGNTPLHLACDEERVEEAKFLVTQGA 196
Query: 118 CINLKNNSNESPLHLA 133
I ++N ++PL +A
Sbjct: 197 SIYIENKEEKTPLQVA 212
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 86 LNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
+N+KD G SPLH A+ G ++ L+ GA +N N + +PLH AA
Sbjct: 66 VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAA 114
Score = 34.7 bits (78), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 14/131 (10%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
G +N D SPL +AAS G + V L+ A++ + N LH I
Sbjct: 63 GVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEI- 121
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
AV L EG A+ + KD + +H A+ +G++ + L+ A N++
Sbjct: 122 -------AVMLLEGGANP------DAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQ 168
Query: 123 NNSNESPLHLA 133
+ +PLHLA
Sbjct: 169 DTEGNTPLHLA 179
Score = 33.1 bits (74), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 16/126 (12%)
Query: 10 DKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVA 69
D++ R+ L A S G + V L++ + KD + LH+ G +E+
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAG-------XDEIV 89
Query: 70 AVFLGEGEASQGIQNLLNEKDKTGCSPLHY-ASREGHIISLENLINLGACINLKNNSNES 128
L +G +N ++ GC+PLHY AS+ H I++ L+ GA + K++ + +
Sbjct: 90 KALLVKGAH-------VNAVNQNGCTPLHYAASKNRHEIAV-MLLEGGANPDAKDHYDAT 141
Query: 129 PLHLAA 134
+H AA
Sbjct: 142 AMHRAA 147
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%)
Query: 83 QNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
++L D+ + LH+A GH +E L+ LG +N K+++ SPLH+AA
Sbjct: 31 KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAA 82
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 14/104 (13%)
Query: 31 TLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKD 90
+++ +K+ D + R LH G I EF ++ +N+KD
Sbjct: 26 SILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP--------------VNDKD 71
Query: 91 KTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
G SPLH A+ G ++ L+ GA +N N + +PLH AA
Sbjct: 72 DAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAA 115
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 59/131 (45%), Gaps = 14/131 (10%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GA +N +++ +PL AAS+ + + L+ AN KD +H G ++K
Sbjct: 97 GAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKG--NLK 154
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
L +AS IQ D G +PLH A E + + L++ GA I ++
Sbjct: 155 MIH------ILLYYKASTNIQ------DTEGNTPLHLACDEERVEEAKLLVSQGASIYIE 202
Query: 123 NNSNESPLHLA 133
N ++PL +A
Sbjct: 203 NKEEKTPLQVA 213
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 16/126 (12%)
Query: 10 DKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVA 69
D++ R+ L A S G + V L++ + KD + LH+ G +E+
Sbjct: 38 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAG-------RDEIV 90
Query: 70 AVFLGEGEASQGIQNLLNEKDKTGCSPLHY-ASREGHIISLENLINLGACINLKNNSNES 128
LG+G +N ++ GC+PLHY AS+ H I++ L+ GA + K++ +
Sbjct: 91 KALLGKGAQ-------VNAVNQNGCTPLHYAASKNRHEIAV-MLLEGGANPDAKDHYEAT 142
Query: 129 PLHLAA 134
+H AA
Sbjct: 143 AMHRAA 148
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 59/132 (44%), Gaps = 14/132 (10%)
Query: 2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHI 61
+G +NV ++ SPL +AA G + L+++ AN ++ ++ LHL G H
Sbjct: 75 SGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQG--HF 132
Query: 62 KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINL 121
+V L N+KD +G +PL YA GH + L+ GA IN
Sbjct: 133 -----QVVKCLLDSNAKP-------NKKDLSGNTPLIYACSGGHHELVALLLQHGASINA 180
Query: 122 KNNSNESPLHLA 133
NN + LH A
Sbjct: 181 SNNKGNTALHEA 192
Score = 33.1 bits (74), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 14/133 (10%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GA+ + ++ PL LA +G ++ V L+ + A KD++ L + +GG H
Sbjct: 109 GANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPL-IYACSGGHH-- 165
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
E+ A+ L G + +N + G + LH A E H+ +E L+ GA + +
Sbjct: 166 ----ELVALLLQHGAS-------INASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVL 214
Query: 123 NNSNESPLHLAAR 135
N + + A +
Sbjct: 215 NKRQRTAVDCAEQ 227
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 86 LNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
+N + G SPLH A+ G + L+ GA +N PLHLA +
Sbjct: 79 VNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQ 128
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%)
Query: 83 QNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
++L D+ + LH+A GH +E L+ LG +N K+++ SPLH+AA
Sbjct: 30 KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAA 81
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 14/104 (13%)
Query: 31 TLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKD 90
+++ +K+ D + R LH G I EF ++ +N+KD
Sbjct: 25 SILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP--------------VNDKD 70
Query: 91 KTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
G SPLH A+ G ++ L+ GA +N N + +PLH AA
Sbjct: 71 DAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAA 114
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 57/131 (43%), Gaps = 14/131 (10%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GA +N +++ +PL AAS+ + + L+ AN KD +H G +
Sbjct: 96 GAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMI 155
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
L +AS IQ D G +PLH A E + + L++ GA I ++
Sbjct: 156 HI--------LLYYKASTNIQ------DTEGNTPLHLACDEERVEEAKLLVSQGASIYIE 201
Query: 123 NNSNESPLHLA 133
N ++PL +A
Sbjct: 202 NKEEKTPLQVA 212
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 16/126 (12%)
Query: 10 DKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVA 69
D++ R+ L A S G + V L++ + KD + LH+ G +E+
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAG-------RDEIV 89
Query: 70 AVFLGEGEASQGIQNLLNEKDKTGCSPLHY-ASREGHIISLENLINLGACINLKNNSNES 128
LG+G +N ++ GC+PLHY AS+ H I++ L+ GA + K++ +
Sbjct: 90 KALLGKGAQ-------VNAVNQNGCTPLHYAASKNRHEIAV-MLLEGGANPDAKDHYEAT 141
Query: 129 PLHLAA 134
+H AA
Sbjct: 142 AMHRAA 147
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 27/49 (55%)
Query: 86 LNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
++ KDK G PLH A GH E L+ GAC+N + +PLH AA
Sbjct: 84 VHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAA 132
Score = 30.8 bits (68), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 86 LNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
+NEK+K +PLH A+ H +E L GA +N ++ ++ LH AA
Sbjct: 240 VNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAA 288
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 33/131 (25%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
G D+NV + +PL++A+ GG + G +
Sbjct: 1 GMDVNVRGPDGFTPLMIASCSGGG---------------------------LETGNSEEE 33
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
E A V + F+ +G + L N+ D+TG + LH A+R + + L+ A N++
Sbjct: 34 EDAPAVISDFIYQGAS------LHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ 87
Query: 123 NNSNESPLHLA 133
+N +PLH A
Sbjct: 88 DNMGRTPLHAA 98
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 59/134 (44%), Gaps = 17/134 (12%)
Query: 4 ADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKE 63
AD N+ D R+PL A S L+RN+A L D + L+L
Sbjct: 82 ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDL--DARMHDGTTPLIL-------- 131
Query: 64 FAEEVAAVFLGEGEASQGIQNL--LNEKDKTGCSPLHYASREGHIISLENLINLGACINL 121
AA EG I + +N D G S LH+A+ ++ + L+ GA ++
Sbjct: 132 -----AARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM 186
Query: 122 KNNSNESPLHLAAR 135
+NN E+PL LAAR
Sbjct: 187 QNNREETPLFLAAR 200
Score = 26.9 bits (58), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKD 43
GA+ ++ + + +PL LAA G ++T L+ + AN + D
Sbjct: 181 GANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITD 221
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 59/134 (44%), Gaps = 17/134 (12%)
Query: 4 ADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKE 63
AD N+ D R+PL A S L+RN+A L D + L+L
Sbjct: 81 ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDL--DARMHDGTTPLIL-------- 130
Query: 64 FAEEVAAVFLGEGEASQGIQNL--LNEKDKTGCSPLHYASREGHIISLENLINLGACINL 121
AA EG I + +N D G S LH+A+ ++ + L+ GA ++
Sbjct: 131 -----AARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM 185
Query: 122 KNNSNESPLHLAAR 135
+NN E+PL LAAR
Sbjct: 186 QNNREETPLFLAAR 199
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 57 GGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLG 116
G +E A V + F+ +G + L N+ D+TG + LH A+ + + L+
Sbjct: 27 GNSEEEEDAPAVISDFIYQGAS------LHNQTDRTGATALHLAAAYSRSDAAKRLLEAS 80
Query: 117 ACINLKNNSNESPLHLA 133
A N+++N +PLH A
Sbjct: 81 ADANIQDNMGRTPLHAA 97
Score = 26.6 bits (57), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKD 43
GA+ ++ + + +PL LAA G ++T L+ + AN + D
Sbjct: 180 GANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITD 220
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 59/134 (44%), Gaps = 17/134 (12%)
Query: 4 ADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKE 63
AD N+ D R+PL A S L+RN+A L D + L+L
Sbjct: 81 ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDL--DARMHDGTTPLIL-------- 130
Query: 64 FAEEVAAVFLGEGEASQGIQNL--LNEKDKTGCSPLHYASREGHIISLENLINLGACINL 121
AA EG I + +N D G S LH+A+ ++ + L+ GA ++
Sbjct: 131 -----AARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM 185
Query: 122 KNNSNESPLHLAAR 135
+NN E+PL LAAR
Sbjct: 186 QNNREETPLFLAAR 199
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 57 GGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLG 116
G +E A V + F+ +G + L N+ D+TG + LH A+R + + L+
Sbjct: 27 GNSEEEEDAPAVISDFIYQGAS------LHNQTDRTGETALHLAARYSRSDAAKRLLEAS 80
Query: 117 ACINLKNNSNESPLHLA 133
A N+++N +PLH A
Sbjct: 81 ADANIQDNMGRTPLHAA 97
Score = 26.6 bits (57), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKD 43
GA+ ++ + + +PL LAA G ++T L+ + AN + D
Sbjct: 180 GANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITD 220
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 59/135 (43%), Gaps = 17/135 (12%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
AD N+ D R+PL A S L+RN+A L D + L+L
Sbjct: 48 SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDL--DARMHDGTTPLIL------- 98
Query: 63 EFAEEVAAVFLGEGEASQGIQNL--LNEKDKTGCSPLHYASREGHIISLENLINLGACIN 120
AA EG I + +N D G S LH+A+ ++ + L+ GA +
Sbjct: 99 ------AARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD 152
Query: 121 LKNNSNESPLHLAAR 135
++NN E+PL LAAR
Sbjct: 153 MQNNREETPLFLAAR 167
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 65 AEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNN 124
A V + F+ +G + L N+ D+TG + LH A+R + + L+ A N+++N
Sbjct: 3 APAVISDFIYQGAS------LHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDN 56
Query: 125 SNESPLHLA 133
+PLH A
Sbjct: 57 MGRTPLHAA 65
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKD 43
GA+ ++ + + +PL LAA G ++T L+ + AN + D
Sbjct: 148 GANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITD 188
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 95 SPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
SP+H A+ GH +SL NLI+ G +N+ + SPLH A
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEAC 44
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 95 SPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
SP+H A+R GH+ + +LI G I+ K + +PL+LA
Sbjct: 103 SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLAC 142
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 25/39 (64%)
Query: 95 SPLHYASREGHIISLENLINLGACINLKNNSNESPLHLA 133
SP+H A+ GH +SL NLI+ G +N+ + SPLH A
Sbjct: 61 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEA 99
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 95 SPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
SP+H A+R GH+ + +LI G I+ K + +PL+LA
Sbjct: 159 SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACE 199
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 89 KDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLA 133
KDK G +PLH A+R GH+ ++ L+ GA +N ++ ++ ++
Sbjct: 35 KDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDIS 79
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 100 ASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
A+R G + L+ GA + K+ + +PLHLAAR
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAAR 48
Score = 26.9 bits (58), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD+ DK +PL LAA G + V L+ A++ +D + + + NG +
Sbjct: 29 GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDNGNEDLA 88
Query: 63 EF 64
E
Sbjct: 89 EI 90
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%)
Query: 86 LNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
++ KDK G PLH A GH E L+ GA +N+ + +PLH AA
Sbjct: 72 VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAA 120
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 95 SPLHYASREGHIISLENLINLGACINLKNNSNESPLH 131
+PLH+A+ + +E L+ GA ++ K+ PLH
Sbjct: 48 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLH 84
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 55/129 (42%), Gaps = 16/129 (12%)
Query: 6 LNVLDKEKR--SPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKE 63
+N D E R +PL AA V L+++ A++ KD + ++ L GH
Sbjct: 37 VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKD--KGGLVPLHNACSYGHY-- 92
Query: 64 FAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKN 123
EVA + + G ++N D +PLH A+ +G + L+ GA KN
Sbjct: 93 ---EVAELLVKHGA-------VVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKN 142
Query: 124 NSNESPLHL 132
+PL L
Sbjct: 143 RDGNTPLDL 151
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 14/128 (10%)
Query: 6 LNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFA 65
+N D+E +PL+ AA+ G V L++N A+ L R + L L G
Sbjct: 29 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKG-------Y 81
Query: 66 EEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNS 125
++ + L G +NE D G +PL YA H+ ++ L+ GA ++ +S
Sbjct: 82 TDIVKMLLDCGVD-------VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDS 134
Query: 126 NESPLHLA 133
+ + LA
Sbjct: 135 GYNSMDLA 142
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%)
Query: 86 LNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
++ KDK G PLH A GH E L+ GA +N+ + +PLH AA
Sbjct: 70 VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAA 118
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 95 SPLHYASREGHIISLENLINLGACINLKNNSNESPLH 131
+PLH+A+ + +E L+ GA ++ K+ PLH
Sbjct: 46 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLH 82
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 55/129 (42%), Gaps = 16/129 (12%)
Query: 6 LNVLDKEKR--SPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKE 63
+N D E R +PL AA V L+++ A++ KD + ++ L GH
Sbjct: 35 VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKD--KGGLVPLHNACSYGHY-- 90
Query: 64 FAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKN 123
EVA + + G ++N D +PLH A+ +G + L+ GA KN
Sbjct: 91 ---EVAELLVKHGA-------VVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKN 140
Query: 124 NSNESPLHL 132
+PL L
Sbjct: 141 RDGNTPLDL 149
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 14/128 (10%)
Query: 6 LNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFA 65
+N D+E +PL+ AA+ G V L++N A+ L R + L L G
Sbjct: 27 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKG-------Y 79
Query: 66 EEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNS 125
++ + L G +NE D G +PL YA H+ ++ L+ GA ++ +S
Sbjct: 80 TDIVKMLLDCGVD-------VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDS 132
Query: 126 NESPLHLA 133
+ + LA
Sbjct: 133 GYNSMDLA 140
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%)
Query: 86 LNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
++ KDK G PLH A GH E L+ GA +N+ + +PLH AA
Sbjct: 68 VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAA 116
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 95 SPLHYASREGHIISLENLINLGACINLKNNSNESPLH 131
+PLH+A+ + +E L+ GA ++ K+ PLH
Sbjct: 44 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLH 80
Score = 26.2 bits (56), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 55/129 (42%), Gaps = 16/129 (12%)
Query: 6 LNVLDKEKR--SPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKE 63
+N D E R +PL AA V L+++ A++ KD + ++ L GH
Sbjct: 33 VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKD--KGGLVPLHNACSYGHY-- 88
Query: 64 FAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKN 123
EVA + + G ++N D +PLH A+ +G + L+ GA KN
Sbjct: 89 ---EVAELLVKHGA-------VVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKN 138
Query: 124 NSNESPLHL 132
+PL L
Sbjct: 139 RDGNTPLDL 147
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 14/128 (10%)
Query: 6 LNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFA 65
+N D+E +PL+ AA+ G V L++N A+ L R + L L G
Sbjct: 45 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKG-------Y 97
Query: 66 EEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNS 125
++ + L G +NE D G +PL YA H+ ++ L+ GA ++ +S
Sbjct: 98 TDIVKMLLDCGVD-------VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDS 150
Query: 126 NESPLHLA 133
+ + LA
Sbjct: 151 GYNSMDLA 158
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 14/116 (12%)
Query: 17 LLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEG 76
L A S G + VL L+ A+I +++ LH ++ + +F E A
Sbjct: 44 FLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGAN----- 98
Query: 77 EASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHL 132
+N+ D G PLH A+ G++ E LI+ GA + N+ ++PL +
Sbjct: 99 ---------INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDI 145
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 91 KTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
K+G + LH A+ +G+ L+ LI +N+K+ +PLH AA
Sbjct: 197 KSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAA 240
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 86 LNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
+N + G + LH A + ++ ++ L+ GA IN +N PLH AA
Sbjct: 66 INYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAA 114
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 95 SPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
+PLH+A+R+GH+ + L+ GA +L + S +HLAA+
Sbjct: 78 TPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQ 118
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 90 DKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
D GCS +H A++ GH + LI G +++ + + +PL AA
Sbjct: 106 DGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAA 150
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 85 LLNEKDKTGCSPLHYASREGHIISLENLINL----GACINLKNNSNESPLHLA 133
+ D+ G +PLH A +G++ ++ L+NL G +++ NN ++PLHLA
Sbjct: 1 MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLA 53
Score = 31.2 bits (69), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 86 LNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLA 133
+N + +G S LH AS G + + L+ GA +LKN N++PL +A
Sbjct: 176 VNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVA 223
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 34.3 bits (77), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 84 NLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
NL+N+ D+ G +PL +AS G I ++ L+ GA ++ ES L LA+
Sbjct: 27 NLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLAS 77
Score = 33.9 bits (76), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 61/128 (47%), Gaps = 14/128 (10%)
Query: 6 LNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFA 65
+N D+ +PL+ A++ G +TV L+ A+ + R + L L + GG+
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLA--STGGYT---- 82
Query: 66 EEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNS 125
++ + L E + +N D G +PL YA R H+ +E L+ GA + + +S
Sbjct: 83 -DIVGLLL-ERDVD------INIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADS 134
Query: 126 NESPLHLA 133
+P+ LA
Sbjct: 135 GYTPMDLA 142
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 27/45 (60%)
Query: 89 KDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLA 133
KDK G +PLH A+R GH+ ++ L+ GA + ++ ++ ++
Sbjct: 53 KDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDIS 97
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD+ DK +PL LAA G + V L+ A++ +D + + + NG +
Sbjct: 47 GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLA 106
Query: 63 EF 64
E
Sbjct: 107 EI 108
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 100 ASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
A+R G + L+ GA + K+ + +PLHLAAR
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAAR 66
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 84 NLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
NL+N+ D+ G +PL +AS G I ++ L+ GA ++ ES L LA+
Sbjct: 27 NLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLAS 77
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 60/128 (46%), Gaps = 14/128 (10%)
Query: 6 LNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFA 65
+N D+ +PL+ A++ G +TV L+ A+ + R + L L + GG+
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLA--STGGYT---- 82
Query: 66 EEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNS 125
++ + L E + +N D G +PL YA H+ +E L+ GA + + +S
Sbjct: 83 -DIVGLLL-ERDVD------INIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADS 134
Query: 126 NESPLHLA 133
+P+ LA
Sbjct: 135 GYTPMDLA 142
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 33.5 bits (75), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 58/135 (42%), Gaps = 17/135 (12%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
AD + D R+PL A S L+RN+A L D + L+L
Sbjct: 45 SADAXIQDNMGRTPLHAAVSADAQGVFQILLRNRATDL--DARMHDGTTPLIL------- 95
Query: 63 EFAEEVAAVFLGEGEASQGIQNL--LNEKDKTGCSPLHYASREGHIISLENLINLGACIN 120
AA EG I + +N D G S LH+A+ ++ + L+ GA +
Sbjct: 96 ------AARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD 149
Query: 121 LKNNSNESPLHLAAR 135
++NN E+PL LAAR
Sbjct: 150 MQNNKEETPLFLAAR 164
Score = 33.1 bits (74), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 84 NLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLA 133
+L N+ D+TG + LH A+R + + L+ A +++N +PLH A
Sbjct: 13 SLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAA 62
Score = 26.6 bits (57), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKD 43
GA+ ++ + ++ +PL LAA G ++T L+ + AN + D
Sbjct: 145 GANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITD 185
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 32.7 bits (73), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Query: 16 PLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGE 75
PL AA G + V L+ + A+I +D +LH+L+L K FA ++ + L
Sbjct: 124 PLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPN---KTFACQMYNLLLSY 180
Query: 76 GEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLIN 114
+ +++L + G +P A EG+I+ ++L+
Sbjct: 181 -DGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQ 218
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 32.0 bits (71), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 86 LNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
+N D G S LH+A+ ++ + L+ GA +++NN E+PL LAAR
Sbjct: 41 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAR 90
Score = 26.2 bits (56), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKD 43
GA+ ++ + ++ +PL LAA G ++T L+ + AN + D
Sbjct: 71 GANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITD 111
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 55/129 (42%), Gaps = 14/129 (10%)
Query: 7 NVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAE 66
N D R+PL++A G + LV N + KDI L V N I E
Sbjct: 29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAE--- 85
Query: 67 EVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSN 126
L +G +N KD +G +PL ++ G+ L+ GA +N +N
Sbjct: 86 ----KLLSKGSN-------VNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEG 134
Query: 127 ESPLHLAAR 135
E+PL +A++
Sbjct: 135 ETPLIVASK 143
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 17/135 (12%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD N D R+PL A + L+RN+A LN H
Sbjct: 74 GADANSQDNTGRTPLHAAVAADAMGVFQILLRNRAT---------------NLNARMHDG 118
Query: 63 EFAEEVAAVFLGEGEASQGI--QNLLNEKDKTGCSPLHYASREGHIISLENLINLGACIN 120
+AA EG I +N D +G + LH+A+ + ++ L+ A +
Sbjct: 119 TTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRD 178
Query: 121 LKNNSNESPLHLAAR 135
+++ +E+PL LAAR
Sbjct: 179 AQDDKDETPLFLAAR 193
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 75 EGEASQGIQNLLNE-------KDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNE 127
E +Q I +LL + DKTG + LH A+R + + L++ GA N ++N+
Sbjct: 26 EDSTAQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGR 85
Query: 128 SPLHLA 133
+PLH A
Sbjct: 86 TPLHAA 91
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 31.2 bits (69), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 86 LNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLA 133
++E D G +PL+ A I + LI+ GA INL+N+ ++SP A
Sbjct: 32 VDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYA 79
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 30.8 bits (68), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 11/133 (8%)
Query: 4 ADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKE 63
A LN + +++PL LA + L+ + L+D LHL G
Sbjct: 33 AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGC----- 87
Query: 64 FAEEVAAV-FLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
+A+V L + + + ++L + G + LH AS G++ +E L++LGA +N +
Sbjct: 88 ----LASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ 143
Query: 123 NNSN-ESPLHLAA 134
N + LHLA
Sbjct: 144 EPCNGRTALHLAV 156
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 30.4 bits (67), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 11/132 (8%)
Query: 4 ADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKE 63
A LN + +++PL LA + L+ + L+D LHL G
Sbjct: 36 AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGC----- 90
Query: 64 FAEEVAAV-FLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
+A+V L + + + ++L + G + LH AS G++ +E L++LGA +N +
Sbjct: 91 ----LASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ 146
Query: 123 NNSN-ESPLHLA 133
N + LHLA
Sbjct: 147 EPCNGRTALHLA 158
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%)
Query: 82 IQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
I N+LN +D G + L+ A+R G+I ++ L++ GA + N S P+ A
Sbjct: 272 IANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 13/101 (12%)
Query: 5 DLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEF 64
DLN + + + L LA + ++ L+ N A++ +KD + LH G + E
Sbjct: 99 DLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIE- 157
Query: 65 AEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGH 105
+ G G+++ +N +DK G +PL +A EGH
Sbjct: 158 ------LLCGLGKSA------VNWQDKQGWTPLFHALAEGH 186
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 53/127 (41%), Gaps = 17/127 (13%)
Query: 10 DKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNI--LHLLVLNGGGHIKEFAEE 67
D +P +A S G + V +L L I + + LHL V G E ++
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAV---GKKWFEVSQ- 124
Query: 68 VAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLG-ACINLKNNSN 126
FL E AS I KDK PLH A+ G + +E L LG + +N ++
Sbjct: 125 ----FLIENGASVRI------KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQG 174
Query: 127 ESPLHLA 133
+PL A
Sbjct: 175 WTPLFHA 181
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 86 LNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
LN+ G + LH A + + LI GA + +K+ N+ PLH AA
Sbjct: 100 LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAA 148
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 29.6 bits (65), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 13/101 (12%)
Query: 5 DLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEF 64
DLN + + + L LA + ++ L+ N A++ +KD + LH G + E
Sbjct: 99 DLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIE- 157
Query: 65 AEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGH 105
+ G G+++ +N +DK G +PL +A EGH
Sbjct: 158 ------LLCGLGKSA------VNWQDKQGWTPLFHALAEGH 186
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 53/127 (41%), Gaps = 17/127 (13%)
Query: 10 DKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNI--LHLLVLNGGGHIKEFAEE 67
D +P +A S G + V +L L I + + LHL V G E ++
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAV---GKKWFEVSQ- 124
Query: 68 VAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLG-ACINLKNNSN 126
FL E AS I KDK PLH A+ G + +E L LG + +N ++
Sbjct: 125 ----FLIENGASVRI------KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQG 174
Query: 127 ESPLHLA 133
+PL A
Sbjct: 175 WTPLFHA 181
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 86 LNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
LN+ G + LH A + + LI GA + +K+ N+ PLH AA
Sbjct: 100 LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAA 148
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 29.6 bits (65), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 13/101 (12%)
Query: 5 DLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEF 64
DLN + + + L LA + ++ L+ N A++ +KD + LH G + E
Sbjct: 99 DLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIE- 157
Query: 65 AEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGH 105
+ G G+++ +N +DK G +PL +A EGH
Sbjct: 158 ------LLCGLGKSA------VNWQDKQGWTPLFHALAEGH 186
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 53/127 (41%), Gaps = 17/127 (13%)
Query: 10 DKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNI--LHLLVLNGGGHIKEFAEE 67
D +P +A S G + V +L L I + + LHL V G E ++
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAV---GKKWFEVSQ- 124
Query: 68 VAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLG-ACINLKNNSN 126
FL E AS I KDK PLH A+ G + +E L LG + +N ++
Sbjct: 125 ----FLIENGASVRI------KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQG 174
Query: 127 ESPLHLA 133
+PL A
Sbjct: 175 WTPLFHA 181
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 86 LNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
LN+ G + LH A + + LI GA + +K+ N+ PLH AA
Sbjct: 100 LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAA 148
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 29.3 bits (64), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 82 IQNLLNEKDKT------GCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
+Q ++ E D G + LH A GH ++ L+ G +N ++ +PLH AA
Sbjct: 53 VQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAA 111
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 29.3 bits (64), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 82 IQNLLNEKDKT------GCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
+Q ++ E D G + LH A GH ++ L+ G +N ++ +PLH AA
Sbjct: 53 VQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAA 111
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 29.3 bits (64), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 85 LLNEKDKTGCSPLHYASREGHIISLENLINLGAC-INLKNNSNESPLHLAA 134
++N D G + LHY+ + ++ L++ G C ++ +N + SP+ L A
Sbjct: 103 VVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTA 153
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 28.9 bits (63), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 93 GCSPLHYASREGHIISLENLINLGACINLKNNSNESPL 130
G PLHYA+ G + LE L+ GA IN + + +PL
Sbjct: 35 GRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL 72
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 28.9 bits (63), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 93 GCSPLHYASREGHIISLENLINLGACINLKNNSNESPL 130
G PLHYA+ G + LE L+ GA IN + + +PL
Sbjct: 40 GRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL 77
Score = 25.4 bits (54), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 1 MTGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLK 42
+ GAD+N DK +PLL A G V L+ A+ +K
Sbjct: 61 LKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVK 102
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 15/81 (18%)
Query: 68 VAAVFLGEGEASQGIQNLLNEKDK-------------TGCSPLHYASREG--HIISLENL 112
V A+ G E Q ++LLNE D+ G + LH+ G ++ ++ L
Sbjct: 100 VVALVEGAKERGQXPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEXIKIL 159
Query: 113 INLGACINLKNNSNESPLHLA 133
+ LGA K+ ++E+PL A
Sbjct: 160 VQLGASPTAKDKADETPLXRA 180
Score = 26.9 bits (58), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 97 LHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
+H A+R+G + LI G ++N + LHLA +
Sbjct: 24 IHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACK 62
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Query: 73 LGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHL 132
L E S IQN + GC+ LH A + G + + + L ++G +L + + P+HL
Sbjct: 39 LIETGVSPTIQN------RFGCTALHLACKFGCVDTAKYLASVGEVHSLWH--GQKPIHL 90
Query: 133 A 133
A
Sbjct: 91 A 91
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 86 LNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
L+++ G + LHY + L+ L+ A I + N S E+PL +A R
Sbjct: 198 LDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKR 247
>pdb|2WMD|A Chain A, Crystal Structure Of Nmra-Like Family Domain Containing
Protein 1 In Complex With Nadp And 2-(4-Chloro-
Phenylamino)-Nicotinic Acid
pdb|2WM3|A Chain A, Crystal Structure Of Nmra-Like Family Domain Containing
Protein 1 In Complex With Niflumic Acid
Length = 299
Score = 26.9 bits (58), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 26 WKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFA--EEVAAVFLGEGEASQGIQ 83
W++ K LL D+ RR LH +V +G +IK+ AA F G+GE + +
Sbjct: 83 WESCSQEQEVKQGKLLADLARRLGLHYVVYSGLENIKKLTAGRLAAAHFDGKGEVEEYFR 142
Query: 84 NL 85
++
Sbjct: 143 DI 144
>pdb|3E5M|A Chain A, Crystal Structure Of The Hscarg Y81a Mutant
pdb|3E5M|B Chain B, Crystal Structure Of The Hscarg Y81a Mutant
Length = 299
Score = 26.9 bits (58), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 25 GWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFA--EEVAAVFLGEGEASQGI 82
W++ K LL D+ RR LH +V +G +IK+ AA F G+GE +
Sbjct: 81 AWESCSQEQEVKQGKLLADLARRLGLHYVVYSGLENIKKLTAGRLAAAHFDGKGEVEEYF 140
Query: 83 QNL 85
+++
Sbjct: 141 RDI 143
>pdb|1NT2|A Chain A, Crystal Structure Of FibrillarinNOP5P COMPLEX
Length = 210
Score = 26.9 bits (58), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 16 PLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAV 71
PLL AS+ WK + + K +++ +DI ++N + +L N +KE E V V
Sbjct: 109 PLLFDASKP-WK--YSGIVEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMV 161
>pdb|3DXF|A Chain A, Crystal Structure Of The Hscarg R37a Mutant
pdb|3DXF|B Chain B, Crystal Structure Of The Hscarg R37a Mutant
Length = 299
Score = 26.9 bits (58), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 26 WKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFA--EEVAAVFLGEGEASQGIQ 83
W++ K LL D+ RR LH +V +G +IK+ AA F G+GE + +
Sbjct: 82 WESCSQEQEVKQGKLLADLARRLGLHYVVYSGLENIKKLTAGRLAAAHFDGKGEVEEYFR 141
Query: 84 NL 85
++
Sbjct: 142 DI 143
>pdb|2EXX|A Chain A, Crystal Structure Of Hscarg From Homo Sapiens In Complex
With Nadp
pdb|2EXX|B Chain B, Crystal Structure Of Hscarg From Homo Sapiens In Complex
With Nadp
Length = 306
Score = 26.9 bits (58), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 26 WKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFA--EEVAAVFLGEGEASQGIQ 83
W++ K LL D+ RR LH +V +G +IK+ AA F G+GE + +
Sbjct: 89 WESCSQEQEVKQGKLLADLARRLGLHYVVYSGLENIKKLTAGRLAAAHFDGKGEVEEYFR 148
Query: 84 NL 85
++
Sbjct: 149 DI 150
>pdb|1JDF|A Chain A, Glucarate Dehydratase From E.Coli N341d Mutant
pdb|1JDF|B Chain B, Glucarate Dehydratase From E.Coli N341d Mutant
pdb|1JDF|C Chain C, Glucarate Dehydratase From E.Coli N341d Mutant
pdb|1JDF|D Chain D, Glucarate Dehydratase From E.Coli N341d Mutant
Length = 446
Score = 26.9 bits (58), Expect = 3.8, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 12 EKRSPLLLAASRGGWKTVLTLVRN 35
E PL++ + G +K VLTLVRN
Sbjct: 66 EDAIPLVVGKTLGEYKNVLTLVRN 89
>pdb|1JCT|A Chain A, Glucarate Dehydratase, N341l Mutant Orthorhombic Form
pdb|1JCT|B Chain B, Glucarate Dehydratase, N341l Mutant Orthorhombic Form
Length = 446
Score = 26.9 bits (58), Expect = 3.9, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 12 EKRSPLLLAASRGGWKTVLTLVRN 35
E PL++ + G +K VLTLVRN
Sbjct: 66 EDAIPLVVGKTLGEYKNVLTLVRN 89
>pdb|1EC7|A Chain A, E. Coli Glucarate Dehydratase Native Enzyme
pdb|1EC7|B Chain B, E. Coli Glucarate Dehydratase Native Enzyme
pdb|1EC7|C Chain C, E. Coli Glucarate Dehydratase Native Enzyme
pdb|1EC7|D Chain D, E. Coli Glucarate Dehydratase Native Enzyme
pdb|1EC8|A Chain A, E. Coli Glucarate Dehydratase Bound To Product 2,3-
Dihydroxy-5-Oxo-Hexanedioate
pdb|1EC8|B Chain B, E. Coli Glucarate Dehydratase Bound To Product 2,3-
Dihydroxy-5-Oxo-Hexanedioate
pdb|1EC8|C Chain C, E. Coli Glucarate Dehydratase Bound To Product 2,3-
Dihydroxy-5-Oxo-Hexanedioate
pdb|1EC8|D Chain D, E. Coli Glucarate Dehydratase Bound To Product 2,3-
Dihydroxy-5-Oxo-Hexanedioate
pdb|1EC9|A Chain A, E. Coli Glucarate Dehydratase Bound To Xylarohydroxamate
pdb|1EC9|B Chain B, E. Coli Glucarate Dehydratase Bound To Xylarohydroxamate
pdb|1EC9|C Chain C, E. Coli Glucarate Dehydratase Bound To Xylarohydroxamate
pdb|1EC9|D Chain D, E. Coli Glucarate Dehydratase Bound To Xylarohydroxamate
pdb|1ECQ|A Chain A, E. Coli Glucarate Dehydratase Bound To 4-Deoxyglucarate
pdb|1ECQ|B Chain B, E. Coli Glucarate Dehydratase Bound To 4-Deoxyglucarate
pdb|1ECQ|C Chain C, E. Coli Glucarate Dehydratase Bound To 4-Deoxyglucarate
pdb|1ECQ|D Chain D, E. Coli Glucarate Dehydratase Bound To 4-Deoxyglucarate
pdb|4GYP|A Chain A, Crystal Structure Of The Heterotetrameric Complex Of
Glucd And Glucdrp From E. Coli K-12 Mg1655 (Efi Target
Efi-506058)
pdb|4GYP|B Chain B, Crystal Structure Of The Heterotetrameric Complex Of
Glucd And Glucdrp From E. Coli K-12 Mg1655 (Efi Target
Efi-506058)
Length = 446
Score = 26.9 bits (58), Expect = 3.9, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 12 EKRSPLLLAASRGGWKTVLTLVRN 35
E PL++ + G +K VLTLVRN
Sbjct: 66 EDAIPLVVGKTLGEYKNVLTLVRN 89
>pdb|3PWI|A Chain A, Crystal Structure Of The Mutant P34a Of D-Glucarate
Dehydratase From Escherichia Coli Complexed With
Product 5-Keto-4-Deoxy-D-Glucarate
pdb|3PWI|B Chain B, Crystal Structure Of The Mutant P34a Of D-Glucarate
Dehydratase From Escherichia Coli Complexed With
Product 5-Keto-4-Deoxy-D-Glucarate
Length = 446
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 12 EKRSPLLLAASRGGWKTVLTLVRN 35
E PL++ + G +K VLTLVRN
Sbjct: 66 EDAIPLVVGKTLGEYKNVLTLVRN 89
>pdb|3PWG|A Chain A, Crystal Structure Of The Mutant S29g.P34a Of D-Glucarate
Dehydratase From Escherichia Coli Complexed With
Product 5-Keto-4-Deoxy-D- Glucarate
pdb|3PWG|B Chain B, Crystal Structure Of The Mutant S29g.P34a Of D-Glucarate
Dehydratase From Escherichia Coli Complexed With
Product 5-Keto-4-Deoxy-D- Glucarate
pdb|3PWG|C Chain C, Crystal Structure Of The Mutant S29g.P34a Of D-Glucarate
Dehydratase From Escherichia Coli Complexed With
Product 5-Keto-4-Deoxy-D- Glucarate
pdb|3PWG|D Chain D, Crystal Structure Of The Mutant S29g.P34a Of D-Glucarate
Dehydratase From Escherichia Coli Complexed With
Product 5-Keto-4-Deoxy-D- Glucarate
Length = 446
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 12 EKRSPLLLAASRGGWKTVLTLVRN 35
E PL++ + G +K VLTLVRN
Sbjct: 66 EDAIPLVVGKTLGEYKNVLTLVRN 89
>pdb|1G0W|A Chain A, Crystal Structure Of Bovine Retinal Creatine Kinase
Length = 380
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 5 DLNVLDKEKRSPLLLAASRG-GWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKE 63
D + L + SPLLLA+ W + N L IN + L ++ + GG++KE
Sbjct: 188 DDHFLFDKPVSPLLLASGMARDWPDARGIWHNDNKTFLVWINEEDHLRVISMQKGGNMKE 247
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 86 LNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLA 133
+N+ D G PLH+A+ GH + GA + +++ PL +A
Sbjct: 261 VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIA 308
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 86 LNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLA 133
+N+ D G PLH+A+ GH + GA + +++ PL +A
Sbjct: 261 VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIA 308
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 86 LNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLA 133
+N+ D G PLH+A+ GH + GA + +++ PL +A
Sbjct: 261 VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIA 308
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 26.6 bits (57), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLN 56
GAD+N D ++ +PL LA + V L + A+ + + + R+ LH N
Sbjct: 156 GADVNAXDCDENTPLXLAVLARRRRLVAYLXKAGADPTIYNKSERSALHQAAAN 209
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 26.6 bits (57), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 96 PLHYASREGHIISLENLINLGACINLKNNSNESPLHLA 133
P+H A+REG + +L L GA +++++ P+ LA
Sbjct: 81 PVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLA 118
>pdb|2J1Q|A Chain A, Crystal Structure Of Trypanosoma Cruzi Arginine Kinase
Length = 357
Score = 26.6 bits (57), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 5 DLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKE- 63
D + L KE L A + W T + N A L +N + L ++ + GG++KE
Sbjct: 183 DDHFLFKEGDRFLQAAHACKFWPTGRGIYHNDAKTFLVWVNEEDHLRIISMQKGGNLKEV 242
Query: 64 FAEEVAAV 71
F V AV
Sbjct: 243 FGRLVTAV 250
>pdb|1SQW|A Chain A, Crystal Structure Of Kd93, A Novel Protein Expressed In
The Human Pro
Length = 188
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 14/77 (18%)
Query: 67 EVAAVFLGEGEASQGIQNLLNEKDKTGCSPLH----YASREGHI-----ISLENLINLGA 117
E A ++GE +Q L++ D T C LH Y E + IS + L++LG
Sbjct: 14 EKIAKYIGEN-----LQLLVDRPDGTYCFRLHNDRVYYVSEKIMKLAANISGDKLVSLGT 68
Query: 118 CINLKNNSNESPLHLAA 134
C +++ LH+ A
Sbjct: 69 CFGKFTKTHKFRLHVTA 85
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Query: 79 SQGIQNLLNEKDKT-----GCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLA 133
S+ +++ L+ KD G S +YA + ++ + L+N GA NL NE PLH A
Sbjct: 12 SKQLKSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL--ENEFPLHQA 69
Query: 134 A 134
A
Sbjct: 70 A 70
>pdb|3B6R|A Chain A, Crystal Structure Of Human Brain-Type Creatine Kinase
pdb|3B6R|B Chain B, Crystal Structure Of Human Brain-Type Creatine Kinase
pdb|3DRB|A Chain A, Crystal Structure Of Human Brain-Type Creatine Kinase
pdb|3DRB|B Chain B, Crystal Structure Of Human Brain-Type Creatine Kinase
pdb|3DRE|A Chain A, Crystal Structure Of Human Brain-Type Creatine Kinase
pdb|3DRE|B Chain B, Crystal Structure Of Human Brain-Type Creatine Kinase
Length = 381
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 5 DLNVLDKEKRSPLLLAASRG-GWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKE 63
D + L + SPLLLA+ W + N L +N + L ++ + GG++KE
Sbjct: 189 DDHFLFDKPVSPLLLASGMARDWPDARGIWHNDNKTFLVWVNEEDHLRVISMQKGGNMKE 248
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 26.2 bits (56), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 96 PLHYASREGHIISLENLINLGACINLKNNSNESPLHLA 133
P+H A+REG + +L L GA +++++ P+ LA
Sbjct: 81 PVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLA 118
>pdb|1QH4|A Chain A, Crystal Structure Of Chicken Brain-Type Creatine Kinase At
1.41 Angstrom Resolution
pdb|1QH4|B Chain B, Crystal Structure Of Chicken Brain-Type Creatine Kinase At
1.41 Angstrom Resolution
pdb|1QH4|C Chain C, Crystal Structure Of Chicken Brain-Type Creatine Kinase At
1.41 Angstrom Resolution
pdb|1QH4|D Chain D, Crystal Structure Of Chicken Brain-Type Creatine Kinase At
1.41 Angstrom Resolution
Length = 380
Score = 26.2 bits (56), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 5 DLNVLDKEKRSPLLLAASRG-GWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKE 63
D + L + SPLLLA+ W + N L IN + L ++ + GG++KE
Sbjct: 188 DDHFLFDKPVSPLLLASGMARDWPDARGIWHNDNKTFLVWINEEDHLRVISMQKGGNMKE 247
>pdb|1T5Y|A Chain A, Crystal Structure Of Northeast Structural Genomics
Consortium Target Hr2118: A Human Homolog Of
Saccharomyces Cerevisiae Nip7p
Length = 190
Score = 26.2 bits (56), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 14/77 (18%)
Query: 67 EVAAVFLGEGEASQGIQNLLNEKDKTGCSPLH-----YASRE----GHIISLENLINLGA 117
E A ++GE +Q L++ D T C LH Y S + IS + L++LG
Sbjct: 24 EKIAKYIGEN-----LQLLVDRPDGTYCFRLHNDRVYYVSEKIXKLAANISGDKLVSLGT 78
Query: 118 CINLKNNSNESPLHLAA 134
C +++ LH+ A
Sbjct: 79 CFGKFTKTHKFRLHVTA 95
>pdb|1PJQ|A Chain A, Structure And Function Of Cysg, The Multifunctional
MethyltransferaseDEHYDROGENASEFERROCHELATASE FOR
Siroheme Synthesis
pdb|1PJQ|B Chain B, Structure And Function Of Cysg, The Multifunctional
MethyltransferaseDEHYDROGENASEFERROCHELATASE FOR
Siroheme Synthesis
pdb|1PJS|A Chain A, The Co-Crystal Structure Of Cysg, The Multifunctional
MethyltransferaseDEHYDROGENASEFERROCHELATASE FOR
Siroheme Synthesis, In Complex With It Nad Cofactor
pdb|1PJS|B Chain B, The Co-Crystal Structure Of Cysg, The Multifunctional
MethyltransferaseDEHYDROGENASEFERROCHELATASE FOR
Siroheme Synthesis, In Complex With It Nad Cofactor
Length = 457
Score = 26.2 bits (56), Expect = 6.5, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 14 RSPLLLAASRGGWKTVLT-LVRNKANILL 41
RSPL++A S GG VL L+R K LL
Sbjct: 119 RSPLMVAVSXGGTSPVLARLLREKLESLL 147
>pdb|2QJT|B Chain B, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE COMPLEXED
With Amp And Mn Ion From Francisella Tularensis
pdb|2QJT|A Chain A, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE COMPLEXED
With Amp And Mn Ion From Francisella Tularensis
pdb|2R5W|B Chain B, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE FROM
Francisella Tularensis
pdb|2R5W|A Chain A, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE FROM
Francisella Tularensis
Length = 352
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
Query: 95 SPLHYASREGHIISLEN----LINLGACINLKNNSNESPLHLAAR 135
P H II+L+N +IN+G+C N N N P R
Sbjct: 17 QPFHKGHLHNIIIALQNSKKVIINIGSCFNTPNIKN--PFSFEQR 59
>pdb|1RR9|A Chain A, Catalytic Domain Of E.Coli Lon Protease
pdb|1RR9|B Chain B, Catalytic Domain Of E.Coli Lon Protease
pdb|1RR9|C Chain C, Catalytic Domain Of E.Coli Lon Protease
pdb|1RR9|D Chain D, Catalytic Domain Of E.Coli Lon Protease
pdb|1RR9|E Chain E, Catalytic Domain Of E.Coli Lon Protease
pdb|1RR9|F Chain F, Catalytic Domain Of E.Coli Lon Protease
Length = 200
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 18 LLAASRGGWKTVLTLVRNKANI 39
LLAA RGG KTVL NK ++
Sbjct: 139 LLAAHRGGIKTVLIPFENKRDL 160
>pdb|1RRE|A Chain A, Crystal Structure Of E.Coli Lon Proteolytic Domain
pdb|1RRE|B Chain B, Crystal Structure Of E.Coli Lon Proteolytic Domain
pdb|1RRE|C Chain C, Crystal Structure Of E.Coli Lon Proteolytic Domain
pdb|1RRE|D Chain D, Crystal Structure Of E.Coli Lon Proteolytic Domain
pdb|1RRE|E Chain E, Crystal Structure Of E.Coli Lon Proteolytic Domain
pdb|1RRE|F Chain F, Crystal Structure Of E.Coli Lon Proteolytic Domain
Length = 200
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 18 LLAASRGGWKTVLTLVRNKANI 39
LLAA RGG KTVL NK ++
Sbjct: 139 LLAAHRGGIKTVLIPFENKRDL 160
>pdb|1PJT|A Chain A, The Structure Of The Ser128ala Point-mutant Variant Of
Cysg, The Multifunctional
Methyltransferase/dehydrogenase/ferrochelatase For
Siroheme Synthesis
pdb|1PJT|B Chain B, The Structure Of The Ser128ala Point-mutant Variant Of
Cysg, The Multifunctional
Methyltransferase/dehydrogenase/ferrochelatase For
Siroheme Synthesis
Length = 457
Score = 25.8 bits (55), Expect = 7.5, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 14 RSPLLLAASRGGWKTVLT-LVRNKANILL 41
RSPL++A S GG VL L+R K LL
Sbjct: 119 RSPLMVAVSAGGTSPVLARLLREKLESLL 147
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 25.8 bits (55), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 70 AVFLGEGEASQGIQNLLNEKDKT---GCSPLHYASREGHIISLENLINLGACINLKNNSN 126
A GE E Q +N+ + G + LH A + ++ LI GA +N ++
Sbjct: 28 AALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHG 87
Query: 127 ESPLHLAA 134
+PLH AA
Sbjct: 88 WTPLHCAA 95
>pdb|2YXV|A Chain A, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXV|B Chain B, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXW|A Chain A, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXW|B Chain B, The Deletion Mutant Of Multicopper Oxidase Cueo
Length = 446
Score = 25.4 bits (54), Expect = 9.9, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLK 42
G +L + + P AA R GWK + + N + +L+K
Sbjct: 373 GTQFRILSENGKPP---AAHRAGWKDTVKVEGNVSEVLVK 409
>pdb|3NSF|A Chain A, Apo Form Of The Multicopper Oxidase Cueo
Length = 505
Score = 25.4 bits (54), Expect = 10.0, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLK 42
G +L + + P AA R GWK + + N + +L+K
Sbjct: 421 GTQFRILSENGKPP---AAHRAGWKDTVKVEGNVSEVLVK 457
>pdb|1KV7|A Chain A, Crystal Structure Of Cueo, A Multi-Copper Oxidase From E.
Coli Involved In Copper Homeostasis
pdb|1N68|A Chain A, Copper Bound To The Multicopper Oxidase Cueo
pdb|2FQD|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|2FQE|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|2FQF|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|2FQG|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|3NSD|A Chain A, Silver Bound To The Multicopper Oxidase Cueo (Untagged)
pdb|3OD3|A Chain A, Cueo At 1.1 A Resolution Including Residues In Previously
Disordered Region
pdb|3PAU|A Chain A, Cueo In The Resting Oxidized State
pdb|3PAV|A Chain A, The Reduced Form Of Cueo
Length = 488
Score = 25.4 bits (54), Expect = 10.0, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLK 42
G +L + + P AA R GWK + + N + +L+K
Sbjct: 421 GTQFRILSENGKPP---AAHRAGWKDTVKVEGNVSEVLVK 457
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,720,169
Number of Sequences: 62578
Number of extensions: 136191
Number of successful extensions: 939
Number of sequences better than 100.0: 143
Number of HSP's better than 100.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 424
Number of HSP's gapped (non-prelim): 404
length of query: 135
length of database: 14,973,337
effective HSP length: 88
effective length of query: 47
effective length of database: 9,466,473
effective search space: 444924231
effective search space used: 444924231
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)