RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8766
(135 letters)
>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate
protein-protein interactions in very diverse families of
proteins. The number of ANK repeats in a protein can
range from 2 to over 20 (ankyrins, for example). ANK
repeats may occur in combinations with other types of
domains. The structural repeat unit contains two
antiparallel helices and a beta-hairpin, repeats are
stacked in a superhelical arrangement; this alignment
contains 4 consecutive repeats.
Length = 126
Score = 79.0 bits (195), Expect = 5e-20
Identities = 45/129 (34%), Positives = 70/129 (54%), Gaps = 14/129 (10%)
Query: 7 NVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAE 66
N D++ R+PL LAAS G + V L+ N A++ KD + R LHL NG
Sbjct: 1 NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGH-------L 53
Query: 67 EVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSN 126
E+ + L +G +N +DK G +PLH A+R G++ ++ L+ GA +N ++
Sbjct: 54 EIVKLLLEKG-------ADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDG 106
Query: 127 ESPLHLAAR 135
+PLHLAA+
Sbjct: 107 RTPLHLAAK 115
>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional.
Length = 422
Score = 54.7 bits (132), Expect = 9e-10
Identities = 44/144 (30%), Positives = 71/144 (49%), Gaps = 16/144 (11%)
Query: 3 GADLNVLDKEKRSPLLLAASR--GGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGH 60
GA++N D +PLL A S+ + V L+ N AN+ +K+ + N+LHL +
Sbjct: 96 GANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYL--ESNK 153
Query: 61 IKEFAEEVAAVFLGEG---EASQGIQNLL------NEKDKTGCSPLHYASREGHIISLEN 111
I ++ + + +G A + LL N KD G +PLHYA + ++
Sbjct: 154 IDL---KILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKY 210
Query: 112 LINLGACINLKNNSNESPLHLAAR 135
L++LGA NL N ++PLH+A
Sbjct: 211 LLDLGANPNLVNKYGDTPLHIAIL 234
Score = 44.3 bits (105), Expect = 5e-06
Identities = 36/137 (26%), Positives = 54/137 (39%), Gaps = 11/137 (8%)
Query: 1 MTGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGH 60
M + K+ PL LA V L+ N A+I N LH L +
Sbjct: 23 MEDDLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNI--KY 80
Query: 61 IKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASRE--GHIISLENLINLGAC 118
+E+ + L G +N D G +PL YA + +E L++ GA
Sbjct: 81 NLTDVKEIVKLLLEYGA-------NVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGAN 133
Query: 119 INLKNNSNESPLHLAAR 135
+N+KN+ E+ LHL
Sbjct: 134 VNIKNSDGENLLHLYLE 150
>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional.
Length = 434
Score = 47.3 bits (112), Expect = 4e-07
Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 14/132 (10%)
Query: 2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHI 61
G D+N+ D E ++ L A +G +++ L A++ ++D N +H+ I
Sbjct: 113 CGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIA-------I 165
Query: 62 KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINL 121
K ++ + L +G N KD G SPLH A+ G ++ LI+ G I
Sbjct: 166 KHNFFDIIKLLLEKGA-------YANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMN 218
Query: 122 KNNSNESPLHLA 133
K + +PLH A
Sbjct: 219 KCKNGFTPLHNA 230
Score = 41.9 bits (98), Expect = 3e-05
Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 9/142 (6%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKAN---ILLKDINRRNILHLLVLNGGG 59
GAD+N ++ + PLL A G + L+ N + + + I + I +L
Sbjct: 58 GADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDV 117
Query: 60 HIKEFAEEVAAVFLGEGEASQGIQNLL------NEKDKTGCSPLHYASREGHIISLENLI 113
+IK+ + + + + I+ L N +D GC P+H A + ++ L+
Sbjct: 118 NIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLL 177
Query: 114 NLGACINLKNNSNESPLHLAAR 135
GA N+K+N+ ESPLH AA
Sbjct: 178 EKGAYANVKDNNGESPLHNAAE 199
Score = 37.3 bits (86), Expect = 0.001
Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 17/134 (12%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GA NV D SPL AA G + + L+ + +I+ K N LH +++
Sbjct: 180 GAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNR---- 235
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYA-SREGHIISLENLINLGACINL 121
+A+ L AS +N++D G +PLH+A + I ++ L+ A I++
Sbjct: 236 ------SAIELLINNAS------INDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISI 283
Query: 122 KNNSNESPLHLAAR 135
K+N E+P+ A +
Sbjct: 284 KDNKGENPIDTAFK 297
>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction
only].
Length = 235
Score = 45.6 bits (107), Expect = 1e-06
Identities = 44/130 (33%), Positives = 65/130 (50%), Gaps = 6/130 (4%)
Query: 6 LNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFA 65
L D + R PL AAS+G K V L+ + A++ KD + LHL LNG + E
Sbjct: 66 LAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNG--NPPEGN 123
Query: 66 EEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNS 125
EVA + L G + N +D+ G +PLH+A+ G +E L+ GA N +N+
Sbjct: 124 IEVAKLLLEAGADLD----VNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSY 179
Query: 126 NESPLHLAAR 135
+ L AA+
Sbjct: 180 GVTALDPAAK 189
Score = 33.3 bits (75), Expect = 0.023
Identities = 31/126 (24%), Positives = 52/126 (41%), Gaps = 11/126 (8%)
Query: 10 DKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVA 69
K S LLL ++ L+ + L +++ L+L + +
Sbjct: 1 SKPSLSALLLINKCFLDLLLVALLLLLSLDLSNPSDKKLNLYLEL-----------ALLP 49
Query: 70 AVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESP 129
A L E + L +D G PLH A+ +G ++ L+ GA +N K+ ++P
Sbjct: 50 AASLSELLLKLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTP 109
Query: 130 LHLAAR 135
LHLAA
Sbjct: 110 LHLAAL 115
Score = 27.1 bits (59), Expect = 3.2
Identities = 32/122 (26%), Positives = 48/122 (39%), Gaps = 22/122 (18%)
Query: 3 GADLNVLDKEKRSPLLLAASRG-----GWKTVLTLVRNKA---NILLKDINRRNILHLLV 54
GAD+N D + +PL LAA G + L+ A L+D + LH
Sbjct: 96 GADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAA 155
Query: 55 LNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLIN 114
LNG I L E A N ++ G + L A++ G I ++ L++
Sbjct: 156 LNGDADI--------VELLLEAGAD------PNSRNSYGVTALDPAAKNGRIELVKLLLD 201
Query: 115 LG 116
G
Sbjct: 202 KG 203
>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies).
Length = 91
Score = 43.4 bits (103), Expect = 1e-06
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 94 CSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
+ LH A+R G++ ++ L+ GA +N K+ + LHLAAR
Sbjct: 29 DTALHLAARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAAR 70
Score = 41.5 bits (98), Expect = 6e-06
Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 16/107 (14%)
Query: 17 LLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEG 76
L LAA G + V L+ A++ L + LHL NG ++ E+ + L G
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLG--DTDTALHLAARNG--NL-----EIVKLLLEHG 51
Query: 77 EASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKN 123
+N KDK G + LH A+R G++ ++ L+ GA INLK+
Sbjct: 52 AD-------VNAKDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91
Score = 34.2 bits (79), Expect = 0.003
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 97 LHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
LH A++ G++ ++ L+ GA +NL + + LHLAAR
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAAR 37
Score = 33.8 bits (78), Expect = 0.005
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNG 57
GAD+N+ + + L LAA G + V L+ + A++ KD + LHL NG
Sbjct: 20 GADVNL--GDTDTALHLAARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAARNG 72
Score = 33.0 bits (76), Expect = 0.010
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKD 43
GAD+N DK+ + L LAA G + V L+ + A+I LKD
Sbjct: 51 GADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91
>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional.
Length = 471
Score = 44.2 bits (105), Expect = 5e-06
Identities = 33/136 (24%), Positives = 53/136 (38%), Gaps = 16/136 (11%)
Query: 3 GADLNVLDKEKRSPL--LLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGH 60
GAD+N LD +PL LL + + + L+ A++ D R++LH H
Sbjct: 142 GADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLH--------H 193
Query: 61 IKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHI--ISLENLINLGAC 118
+ + A + D G +PLH + + L+ G
Sbjct: 194 HLQSFKPRARIV----RELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGIS 249
Query: 119 INLKNNSNESPLHLAA 134
IN +N ++PLH AA
Sbjct: 250 INARNRYGQTPLHYAA 265
Score = 35.0 bits (81), Expect = 0.006
Identities = 31/132 (23%), Positives = 53/132 (40%), Gaps = 15/132 (11%)
Query: 3 GADLNVLDKEKRSPL-LLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHI 61
GAD+N ++ +PL L + + L++ A++ KD R LH+ +
Sbjct: 73 GADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSG----- 127
Query: 62 KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLH-YASREGHIISLEN-LINLGACI 119
+V + L +G A +N D G +PL + L LI+ GA +
Sbjct: 128 FNINPKVIRLLLRKG-AD------VNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADV 180
Query: 120 NLKNNSNESPLH 131
++ S LH
Sbjct: 181 YAVDDRFRSLLH 192
Score = 35.0 bits (81), Expect = 0.006
Identities = 34/135 (25%), Positives = 54/135 (40%), Gaps = 18/135 (13%)
Query: 2 TGADLNVLDKEKRSPLLLAASRGGWK---TVLTLVRNKANILLKDINRRNILHLLVLNGG 58
GAD+N + ++PL L K V L+ A++ + LHL + N
Sbjct: 36 AGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNAT 95
Query: 59 GHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLH-YASREG-HIISLENLINLG 116
+V + + G A +N KDK G +PLH Y S + + L+ G
Sbjct: 96 ------TLDVIKLLIKAG-AD------VNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKG 142
Query: 117 ACINLKNNSNESPLH 131
A +N + +PL
Sbjct: 143 ADVNALDLYGMTPLA 157
>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies).
Length = 56
Score = 41.2 bits (97), Expect = 5e-06
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 83 QNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLA 133
LN D G +PLH A++ G + ++ L+ G +NL+++ + L LA
Sbjct: 6 PIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
Score = 28.5 bits (64), Expect = 0.25
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 4 ADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHL 52
DLN D +PL LAA G + V L++ ++ L+D + L L
Sbjct: 7 IDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDL 55
>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to 24
repeated units, and it mediates most of the protein's
binding activities. Repeats 13-24 are especially active,
with known sites of interaction for the Na/K ATPase,
Cl/HCO(3) anion exchanger, voltage-gated sodium channel,
clathrin heavy chain and L1 family cell adhesion
molecules. The ANK repeats are found to form a
contiguous spiral stack such that ion transporters like
the anion exchanger associate in a large central cavity
formed by the ANK repeat spiral, while clathrin and cell
adhesion molecules associate with specific regions
outside this cavity.
Length = 33
Score = 37.5 bits (88), Expect = 6e-05
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 93 GCSPLHYASREGHIISLENLINLGACINLKNN 124
G +PLH A+R GH+ ++ L+ GA +N ++
Sbjct: 2 GNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33
Score = 25.2 bits (56), Expect = 2.1
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 14 RSPLLLAASRGGWKTVLTLVRNKANILLKD 43
+PL LAA G + V L+ A++ +D
Sbjct: 3 NTPLHLAARNGHLEVVKLLLEAGADVNARD 32
>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies).
Length = 54
Score = 37.6 bits (88), Expect = 9e-05
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 95 SPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
+ LH A+ G + ++ L+ G IN + + LH+AA
Sbjct: 3 TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAE 43
Score = 27.6 bits (62), Expect = 0.57
Identities = 13/44 (29%), Positives = 19/44 (43%)
Query: 14 RSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNG 57
R+ L AA G + V L+ +I D + LH+ NG
Sbjct: 2 RTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENG 45
Score = 25.3 bits (56), Expect = 3.9
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 86 LNEKDKTGCSPLHYASREGHIISLENLI 113
+N D+ G + LH A+ G++ L+ L+
Sbjct: 27 INRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 24.1 bits (53), Expect = 9.5
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 2 TGADLNVLDKEKRSPLLLAASRG 24
G D+N D++ + L +AA G
Sbjct: 23 KGVDINRTDEDGNTALHIAAENG 45
>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional.
Length = 682
Score = 40.0 bits (93), Expect = 1e-04
Identities = 40/155 (25%), Positives = 72/155 (46%), Gaps = 22/155 (14%)
Query: 1 MTGADLNVLDKEKRSPLLLAASRGGWK-TVLTLVRNKANILLKDINRRNILHL------- 52
M GAD+N D+ +PL A++ K V+TL+ AN+ +D + +H
Sbjct: 329 MLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNV 388
Query: 53 ----LVLNGGGHIKEFAEEVAAVF---LGEGEASQGIQNLL------NEKDKTGCSPLHY 99
+L+ G I+ ++++ L ++ L+ N K+K +PLHY
Sbjct: 389 VIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHY 448
Query: 100 ASREG-HIISLENLINLGACINLKNNSNESPLHLA 133
A ++ + +E L++ GA +N N N+ PL +A
Sbjct: 449 ACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLIA 483
Score = 37.0 bits (85), Expect = 0.001
Identities = 39/149 (26%), Positives = 66/149 (44%), Gaps = 16/149 (10%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLV-LNGGGHI 61
GAD+N D +P+ AA RG K V L+ A++ + ++ ++L V I
Sbjct: 168 GADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTI 227
Query: 62 KEFAEEVAAVFLGEGEASQGIQNL--------------LNEKDKTGCSPLHYASREGHII 107
K + + + + + I+N +N D +PLH+AS+ +
Sbjct: 228 KAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLS 287
Query: 108 SL-ENLINLGACINLKNNSNESPLHLAAR 135
L L+ GA +N KN E+PL+L A+
Sbjct: 288 RLVPKLLERGADVNAKNIKGETPLYLMAK 316
Score = 31.2 bits (70), Expect = 0.13
Identities = 32/133 (24%), Positives = 60/133 (45%), Gaps = 16/133 (12%)
Query: 3 GADLNVLDKEKRSPLLLAASRG-GWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHI 61
GAD+N + + +PL L A G + + TL+ A D+N + L++ L+ +
Sbjct: 297 GADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGA-----DVNAADRLYITPLHQASTL 351
Query: 62 KEFAEEVAAVF-LGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACIN 120
+ V + LG +N +D +P+HYA+ +++ + L++ GA I
Sbjct: 352 DRNKDIVITLLELGAN---------VNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIE 402
Query: 121 LKNNSNESPLHLA 133
+ + LH A
Sbjct: 403 ALSQKIGTALHFA 415
>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional.
Length = 477
Score = 37.9 bits (88), Expect = 7e-04
Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 14/133 (10%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GA++N+ DK SPL A V L+ N A+ +D LH+ V G+ K
Sbjct: 191 GANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISV----GYCK 246
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
++ ++ + L G ++ + G + LH + + + L L+ GA IN
Sbjct: 247 DY--DILKLLLEHG-VDVNAKSYI-----LGLTALHSSIKSERKLKL--LLEYGADINSL 296
Query: 123 NNSNESPLHLAAR 135
N+ +PL A +
Sbjct: 297 NSYKLTPLSSAVK 309
Score = 36.0 bits (83), Expect = 0.003
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 86 LNEKDK-TGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
+N KD+ G + LHYA+ E L++ GA +N+ + +N SPLH A +
Sbjct: 160 INMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVK 210
>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel;
Provisional.
Length = 823
Score = 37.5 bits (87), Expect = 0.001
Identities = 37/148 (25%), Positives = 62/148 (41%), Gaps = 18/148 (12%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNIL-------HLLVL 55
D ++ D + R+PL +AAS+G VL L+++ N+ ++D N L H +
Sbjct: 548 KLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIF 607
Query: 56 NGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNE----------KDKTGCSPLHYASREGH 105
H ++ AA L A + + E +D G + L A E H
Sbjct: 608 RILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDH 667
Query: 106 IISLENLINLGACINLKNNSNE-SPLHL 132
+ + LI GA ++ N ++ SP L
Sbjct: 668 VDMVRLLIMNGADVDKANTDDDFSPTEL 695
>gnl|CDD|197603 smart00248, ANK, ankyrin repeats. Ankyrin repeats are about 33
amino acids long and occur in at least four consecutive
copies. They are involved in protein-protein
interactions. The core of the repeat seems to be an
helix-loop-helix structure.
Length = 30
Score = 31.0 bits (71), Expect = 0.015
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 93 GCSPLHYASREGHIISLENLINLGACINL 121
G +PLH A+ G++ ++ L++ GA IN
Sbjct: 2 GRTPLHLAAENGNLEVVKLLLDKGADINA 30
>gnl|CDD|140343 PTZ00322, PTZ00322,
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase;
Provisional.
Length = 664
Score = 32.6 bits (74), Expect = 0.050
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 87 NEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
N +D G +PLH A GH+ + L+ GA L + ++PL LA
Sbjct: 109 NCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEE 157
Score = 28.3 bits (63), Expect = 1.2
Identities = 19/61 (31%), Positives = 30/61 (49%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD N D + R+PL +A + G + V L+ A+ L D + + L L NG +
Sbjct: 105 GADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVV 164
Query: 63 E 63
+
Sbjct: 165 Q 165
>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional.
Length = 413
Score = 31.9 bits (72), Expect = 0.080
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 14/114 (12%)
Query: 7 NVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAE 66
+V K+ +PL LA + L+ A+ + + ++ + LHL V+ G E
Sbjct: 96 DVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLI 155
Query: 67 EVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACIN 120
+ A L+ +D GC+PL A +G I + L++ GA I+
Sbjct: 156 DHKAC--------------LDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANID 195
Score = 30.0 bits (67), Expect = 0.39
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 91 KTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLA 133
K G +PLH A+ + ++ LI GA ++ N SPLHLA
Sbjct: 100 KDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLA 142
Score = 28.8 bits (64), Expect = 0.76
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 95 SPLHYASREGHIISLENLINLGACIN-LKNNSNESPLHLA 133
S LH A EG + ++E L++LG + + +PLHLA
Sbjct: 70 SELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLA 109
Score = 26.1 bits (57), Expect = 7.2
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 90 DKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLA 133
DK SPLH A G I +E LI+ AC+++++ +PL +A
Sbjct: 134 DKF--SPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIA 175
>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional.
Length = 489
Score = 30.6 bits (69), Expect = 0.26
Identities = 37/130 (28%), Positives = 55/130 (42%), Gaps = 19/130 (14%)
Query: 3 GADLNVLDKEKRSPLLLAAS-----RGGWKTVLTLVRNKANILLKDINRRNILHLLVLNG 57
GA++N LD E +PL S + V L+ N A+I K+ + L+ L+ NG
Sbjct: 61 GANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNG 120
Query: 58 GGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLEN---LIN 114
+ E +F+ E G L +KD G + L + H I +E L+
Sbjct: 121 YINNLEI-----LLFMIE----NGADTTLLDKD--GFTMLQVYLQSNHHIDIEIIKLLLE 169
Query: 115 LGACINLKNN 124
G IN NN
Sbjct: 170 KGVDINTHNN 179
>gnl|CDD|222925 PHA02743, PHA02743, Viral ankyrin protein; Provisional.
Length = 166
Score = 29.4 bits (66), Expect = 0.37
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 12/80 (15%)
Query: 59 GHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYAS---REGHIISLENLINL 115
G+I E E VA G+G +LL+ D G H + R ++ +E L+N+
Sbjct: 31 GNIYELME-VAPFISGDG-------HLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNM 82
Query: 116 GACINLKN-NSNESPLHLAA 134
GA IN + + + LH+AA
Sbjct: 83 GADINARELGTGNTLLHIAA 102
>gnl|CDD|191262 pfam05362, Lon_C, Lon protease (S16) C-terminal proteolytic domain.
The Lon serine proteases must hydrolyse ATP to degrade
protein substrates. In Escherichia coli, these proteases
are involved in turnover of intracellular proteins,
including abnormal proteins following heat-shock. The
active site for protease activity resides in a
C-terminal domain. The Lon proteases are classified as
family S16 in Merops.
Length = 205
Score = 29.5 bits (67), Expect = 0.46
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 6/34 (17%)
Query: 11 KEKRSPLLLAASRGGWKTVLTLVRNKANILLKDI 44
KEK LLAA R G KTV+ N+ + L+DI
Sbjct: 152 KEK----LLAAHRAGIKTVIIPKENEKD--LEDI 179
>gnl|CDD|165103 PHA02736, PHA02736, Viral ankyrin protein; Provisional.
Length = 154
Score = 29.1 bits (65), Expect = 0.51
Identities = 29/97 (29%), Positives = 38/97 (39%), Gaps = 13/97 (13%)
Query: 42 KDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYAS 101
DI NILH L NGG V + + S + L+ E ++ G +H S
Sbjct: 13 PDIEGENILHYLCRNGG---------VTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVS 63
Query: 102 REGHIISLENLINL---GACINLKNNSN-ESPLHLAA 134
E L L GA IN K +PLH+A
Sbjct: 64 NPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAV 100
>gnl|CDD|216741 pfam01853, MOZ_SAS, MOZ/SAS family. This region of these proteins
has been suggested to be homologous to
acetyltransferases.
Length = 189
Score = 28.8 bits (65), Expect = 0.61
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Query: 86 LNEKDKTGCSPLHYASREGHIISLENLINLGACI 119
L E D+TGC + Y S+E S EN NL ACI
Sbjct: 57 LTETDETGCHIVGYFSKEKE--SSEN-YNL-ACI 86
>gnl|CDD|165155 PHA02792, PHA02792, ankyrin-like protein; Provisional.
Length = 631
Score = 29.1 bits (65), Expect = 0.78
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 86 LNEKDKTGCSPLHYASREGHIISLENLINLGACINL 121
+N+ DK G S L+Y + +E LI+ GA IN+
Sbjct: 403 INKIDKHGRSILYYCIESHSVSLVEWLIDNGADINI 438
>gnl|CDD|165154 PHA02791, PHA02791, ankyrin-like protein; Provisional.
Length = 284
Score = 28.5 bits (63), Expect = 1.1
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 79 SQGIQNLLNEKDK-----TGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLA 133
S+ +++ L+ KD G S L+YA + ++ + L+N GA NL NE PLH A
Sbjct: 11 SKQLKSFLSSKDAFKADVHGHSALYYAIADNNVRLVCTLLNAGALKNLL--ENEFPLHQA 68
Query: 134 A 134
A
Sbjct: 69 A 69
>gnl|CDD|237282 PRK13055, PRK13055, putative lipid kinase; Reviewed.
Length = 334
Score = 28.0 bits (63), Expect = 1.5
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Query: 39 ILLKDINRRNILHL--LVLNGGGHI 61
I++K N +LHL L+LNGG HI
Sbjct: 225 IIVKTANLFELLHLMALILNGGKHI 249
>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional.
Length = 446
Score = 27.7 bits (61), Expect = 1.9
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 87 NEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLH 131
NE D G PLH AS+ + + L+ GA N + +++PL+
Sbjct: 66 NETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLY 110
>gnl|CDD|223542 COG0466, Lon, ATP-dependent Lon protease, bacterial type
[Posttranslational modification, protein turnover,
chaperones].
Length = 782
Score = 27.9 bits (63), Expect = 1.9
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 6/34 (17%)
Query: 11 KEKRSPLLLAASRGGWKTVLTLVRNKANILLKDI 44
KEK LLAA RGG KTV+ N+ + L++I
Sbjct: 722 KEK----LLAAHRGGIKTVIIPKDNERD--LEEI 749
>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel
protein. The Transient Receptor Potential Ca2+ Channel
(TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also
been called the store-operated calcium channel (SOC)
family. The prototypical members include the Drosophila
retinal proteinsTRP and TRPL (Montell and Rubin, 1989;
Hardie and Minke, 1993). SOC members of the family
mediate the entry of extracellular Ca2+ into cells in
responseto depletion of intracellular Ca2+ stores
(Clapham, 1996) and agonist stimulated production of
inositol-1,4,5 trisphosphate (IP3). One member of the
TRP-CCfamily, mammalian Htrp3, has been shown to form a
tight complex with the IP3 receptor (TC #1.A.3.2.1).
This interaction is apparently required for IP3
tostimulate Ca2+ release via Htrp3. The vanilloid
receptor subtype 1 (VR1), which is the receptor for
capsaicin (the ?hot? ingredient in chili peppers) and
servesas a heat-activated ion channel in the pain
pathway (Caterina et al., 1997), is also a member of
this family. The stretch-inhibitable non-selective
cation channel(SIC) is identical to the vanilloid
receptor throughout all of its first 700 residues, but
it exhibits a different sequence in its last 100
residues. VR1 and SICtransport monovalent cations as
well as Ca2+. VR1 is about 10x more permeable to Ca2+
than to monovalent ions. Ca2+ overload probably causes
cell deathafter chronic exposure to capsaicin.
(McCleskey and Gold, 1999) [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 743
Score = 27.7 bits (62), Expect = 2.1
Identities = 17/43 (39%), Positives = 21/43 (48%)
Query: 14 RSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLN 56
SPL AA G V L + A+IL D +LHLLV+
Sbjct: 176 ESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVME 218
>gnl|CDD|133442 cd00762, NAD_bind_malic_enz, NAD(P) binding domain of malic
enzyme. Malic enzyme (ME), a member of the amino acid
dehydrogenase (DH)-like domain family, catalyzes the
oxidative decarboxylation of L-malate to pyruvate in
the presence of cations (typically Mg++ or Mn++) with
the concomitant reduction of cofactor NAD+ or NADP+.
ME has been found in all organisms and plays important
roles in diverse metabolic pathways such as
photosynthesis and lipogenesis. This enzyme generally
forms homotetramers. The conversion of malate to
pyruvate by ME typically involves oxidation of malate
to produce oxaloacetate, followed by decarboxylation of
oxaloacetate to produce pyruvate and CO2. Amino acid
DH-like NAD(P)-binding domains are members of the
Rossmann fold superfamily and include glutamate,
leucine, and phenylalanine DHs, methylene
tetrahydrofolate DH, methylene-tetrahydromethanopterin
DH, methylene-tetrahydropholate DH/cyclohydrolase,
Shikimate DH-like proteins, malate oxidoreductases, and
glutamyl tRNA reductase. Amino acid DHs catalyze the
deamination of amino acids to keto acids with NAD(P)+
as a cofactor. The NAD(P)-binding Rossmann fold
superfamily includes a wide variety of protein families
including NAD(P)- binding domains of alcohol DHs,
tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DH, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains. These domains
have an alpha-beta-alpha configuration. NAD binding
involves numerous hydrogen and van der Waals contacts.
Length = 254
Score = 27.2 bits (60), Expect = 2.4
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 61 IKEFAEEVAAVFLGEGEASQGIQNLL 86
K+ E +F G G A+ GI NL+
Sbjct: 19 TKKKISEHKVLFNGAGAAALGIANLI 44
>gnl|CDD|100092 cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and
PGM2L1 (phosphoglucomutase 2-like 1). The mammalian
PGM2 is thought to be a phosphopentomutase that
catalyzes the conversion of the nucleoside breakdown
products, ribose-1-phosphate and
deoxyribose-1-phosphate to the corresponding
5-phosphopentoses. PGM2L1 is thought to catalyze the
1,3-bisphosphoglycerate-dependent synthesis of glucose
1,6-bisphosphate and other aldose-bisphosphates that
serve as cofactors for several sugar phosphomutases and
possibly also as regulators of glycolytic enzymes. PGM2
and PGM2L1 belong to the alpha-D-phosphohexomutase
superfamily which includes several related enzymes that
catalyze a reversible intramolecular phosphoryl
transfer on their sugar substrates. Other members of
this superfamily include phosphoglucosamine mutase
(PNGM), phosphoacetylglucosamine mutase (PAGM), the
bacterial phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each
of these enzymes has four domains with a centrally
located active site formed by four loops, one from each
domain. All four domains are included in this alignment
model.
Length = 487
Score = 27.5 bits (62), Expect = 2.7
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 62 KEFAEEVAAVFLGEG 76
+EFAE AAV G
Sbjct: 59 REFAELTAAVLAANG 73
>gnl|CDD|236339 PRK08813, PRK08813, threonine dehydratase; Provisional.
Length = 349
Score = 27.3 bits (60), Expect = 2.8
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 95 SPLHYASREGHIISLENLINLGA 117
+PLHYA R G + LENL G+
Sbjct: 40 TPLHYAERFGVWLKLENLQRTGS 62
>gnl|CDD|237511 PRK13796, PRK13796, GTPase YqeH; Provisional.
Length = 365
Score = 27.1 bits (61), Expect = 3.0
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 12/64 (18%)
Query: 32 LVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEE----VAAVFLGEGEASQGIQNLLN 87
LV NKA++L K + + + + L ++ A+E V L + GI LL
Sbjct: 101 LVGNKADLLPKSVKKNKVKNWL--------RQEAKELGLRPVDVVLISAQKGHGIDELLE 152
Query: 88 EKDK 91
+K
Sbjct: 153 AIEK 156
>gnl|CDD|182730 PRK10787, PRK10787, DNA-binding ATP-dependent protease La;
Provisional.
Length = 784
Score = 27.2 bits (60), Expect = 3.0
Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 11/63 (17%)
Query: 11 KEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAA 70
KEK LLAA RGG KTVL NK + L++I N++ L + H + EEV
Sbjct: 720 KEK----LLAAHRGGIKTVLIPFENKRD--LEEIP-DNVIADLDI----HPVKRIEEVLT 768
Query: 71 VFL 73
+ L
Sbjct: 769 LAL 771
>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to 24
repeated units, and it mediates most of the protein's
binding activities.
Length = 30
Score = 24.9 bits (55), Expect = 3.1
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 93 GCSPLHYASREGHIISLENLINLGA 117
G +PLH A+R G++ ++ L+ GA
Sbjct: 2 GNTPLHLAARNGNLELVKLLLEHGA 26
>gnl|CDD|182606 PRK10637, cysG, siroheme synthase; Provisional.
Length = 457
Score = 27.0 bits (60), Expect = 3.6
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 14 RSPLLLAASRGGWKTVLT-LVRNKANILL 41
RSPL++A S GG VL L+R K LL
Sbjct: 119 RSPLMVAVSSGGTSPVLARLLREKLESLL 147
>gnl|CDD|238943 cd01985, ETF, The electron transfer flavoprotein (ETF) serves as
a specific electron acceptor for various mitochondrial
dehydrogenases. ETF transfers electrons to the main
respiratory chain via ETF-ubiquinone oxidoreductase.
ETF is an heterodimer that consists of an alpha and a
beta subunit which binds one molecule of FAD per dimer
. A similar system also exists in some bacteria. The
homologous pair of proteins (FixA/FixB) are essential
for nitrogen fixation. The alpha subunit of ETF is
structurally related to the bacterial nitrogen fixation
protein fixB which could play a role in a redox process
and feed electrons to ferredoxin. The beta subunit
protein is distantly related to and forms a heterodimer
with the alpha subunit.
Length = 181
Score = 26.4 bits (59), Expect = 3.9
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 61 IKEFAEEVAAVFLGEGEASQGIQNLL 86
+KE+ EV A+ +G A ++ L
Sbjct: 31 LKEYGGEVTALVIGPPAAEVALREAL 56
>gnl|CDD|165089 PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provisional.
Length = 764
Score = 26.4 bits (58), Expect = 5.7
Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 81 GIQNLLNEKDKTGCSPLH--YASREGHIISLENLINLGACINLKNNSNESPLH 131
GI NL KTG LH + I LE L N G +NL+NN +PLH
Sbjct: 165 GIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLH 217
>gnl|CDD|133449 cd05191, NAD_bind_amino_acid_DH, NAD(P) binding domain of amino
acid dehydrogenase-like proteins. Amino acid
dehydrogenase(DH)-like NAD(P)-binding domains are
members of the Rossmann fold superfamily and are found
in glutamate, leucine, and phenylalanine DHs (DHs),
methylene tetrahydrofolate DH,
methylene-tetrahydromethanopterin DH,
methylene-tetrahydropholate DH/cyclohydrolase,
Shikimate DH-like proteins, malate oxidoreductases, and
glutamyl tRNA reductase. Amino acid DHs catalyze the
deamination of amino acids to keto acids with NAD(P)+
as a cofactor. The NAD(P)-binding Rossmann fold
superfamily includes a wide variety of protein families
including NAD(P)- binding domains of alcohol DHs,
tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DH, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains. These domains
have an alpha-beta-alpha configuration. NAD binding
involves numerous hydrogen and van der Waals contacts.
Length = 86
Score = 25.4 bits (56), Expect = 5.9
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 53 LVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNE 88
L+ G + + V LG GE +GI LL +
Sbjct: 9 LLKAAGKVTNKSLKGKTVVVLGAGEVGKGIAKLLAD 44
>gnl|CDD|236722 PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional.
Length = 456
Score = 26.3 bits (58), Expect = 6.7
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 11 KEKRSPLLLAASRGGWKTVLTLVRNK--ANILLKDINRRNI 49
K KR L +G W+ VL R K AN L + +N+ I
Sbjct: 230 KRKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGI 270
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.135 0.383
Gapped
Lambda K H
0.267 0.0786 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,667,717
Number of extensions: 588495
Number of successful extensions: 667
Number of sequences better than 10.0: 1
Number of HSP's gapped: 622
Number of HSP's successfully gapped: 96
Length of query: 135
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 48
Effective length of database: 7,078,804
Effective search space: 339782592
Effective search space used: 339782592
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.1 bits)