RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8766
(135 letters)
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 89.5 bits (223), Expect = 3e-23
Identities = 33/134 (24%), Positives = 55/134 (41%), Gaps = 9/134 (6%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
A LN + +++PL LA + L+ + L+D LHL G
Sbjct: 35 LAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQG----- 89
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
V + + ++L + G + LH AS G++ +E L++LGA +N +
Sbjct: 90 --CLASVGVLTQSC-TTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ 146
Query: 123 NNSN-ESPLHLAAR 135
N + LHLA
Sbjct: 147 EPCNGRTALHLAVD 160
Score = 67.6 bits (166), Expect = 7e-15
Identities = 24/134 (17%), Positives = 40/134 (29%), Gaps = 15/134 (11%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKD-INRRNILHLLVLNGGGHI 61
+ L + + L LA+ G V LV A++ ++ N R LHL V +
Sbjct: 107 HSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQ--NP 164
Query: 62 KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINL 121
++ ++ L G +N G SP + L L
Sbjct: 165 -----DLVSLLL-----KCGAD--VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQ 212
Query: 122 KNNSNESPLHLAAR 135
+E
Sbjct: 213 MLPESEDEESYDTE 226
Score = 66.0 bits (162), Expect = 2e-14
Identities = 29/136 (21%), Positives = 51/136 (37%), Gaps = 24/136 (17%)
Query: 10 DKEKRSPLLLAASRGGWKTVLTLVR----NKANILLKDINRRNILHLLVLNGGGHIKEFA 65
++ S L LA + ++R + A + ++ ++ LHL V+
Sbjct: 5 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVIT--NQP---- 58
Query: 66 EEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGA------CI 119
E+A LG G +D G +PLH A +G + S+ L +
Sbjct: 59 -EIAEALLGAG-CD------PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSIL 110
Query: 120 NLKNNSNESPLHLAAR 135
N + + LHLA+
Sbjct: 111 KATNYNGHTCLHLASI 126
Score = 61.4 bits (150), Expect = 1e-12
Identities = 22/94 (23%), Positives = 35/94 (37%), Gaps = 10/94 (10%)
Query: 42 KDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYAS 101
+ + LHL +++ K EV G+ LN ++ +PLH A
Sbjct: 4 LTEDGDSFLHLAIIHEE---KALTMEVIRQVKGDLA-------FLNFQNNLQQTPLHLAV 53
Query: 102 REGHIISLENLINLGACINLKNNSNESPLHLAAR 135
E L+ G L++ +PLHLA
Sbjct: 54 ITNQPEIAEALLGAGCDPELRDFRGNTPLHLACE 87
Score = 53.3 bits (129), Expect = 1e-09
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 88 EKDKTGCSPLHYASREGHIIS----LENLINLGACINLKNNSNESPLHLAAR 135
+ + G S LH A + + A +N +NN ++PLHLA
Sbjct: 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVI 54
Score = 40.2 bits (95), Expect = 6e-05
Identities = 13/65 (20%), Positives = 21/65 (32%), Gaps = 3/65 (4%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD+N + + SP L R + L + L + +
Sbjct: 174 GADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEF---T 230
Query: 63 EFAEE 67
EF E+
Sbjct: 231 EFTED 235
Score = 38.7 bits (91), Expect = 2e-04
Identities = 15/110 (13%), Positives = 29/110 (26%), Gaps = 15/110 (13%)
Query: 3 GADLNVLDKEK-RSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHI 61
GAD+N + R+ L LA V L++ A++ + L
Sbjct: 140 GADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRP--ST 197
Query: 62 KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLEN 111
+ ++N + Y + E+
Sbjct: 198 -----RIQQQLG-----QLTLEN--LQMLPESEDEESYDTESEFTEFTED 235
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 87.9 bits (219), Expect = 1e-21
Identities = 40/133 (30%), Positives = 61/133 (45%), Gaps = 14/133 (10%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
G N + +PL LAA G + V L+ +AN L + + LHL+ G H+
Sbjct: 235 GGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEG--HV- 291
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
VA V + G+ ++ + G +PLH AS G+I ++ L+ A +N K
Sbjct: 292 ----PVADVLI-----KHGVM--VDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAK 340
Query: 123 NNSNESPLHLAAR 135
SPLH AA+
Sbjct: 341 TKLGYSPLHQAAQ 353
Score = 86.8 bits (216), Expect = 3e-21
Identities = 29/133 (21%), Positives = 56/133 (42%), Gaps = 14/133 (10%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
A + K+ +PL +AA G + L+ A+ N LH+ V + ++
Sbjct: 136 EASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHN--NL- 192
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
++ + L +G + G +PLH A+++ + +L+ G N +
Sbjct: 193 ----DIVKLLL-----PRGGS--PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAE 241
Query: 123 NNSNESPLHLAAR 135
+ +PLHLAA+
Sbjct: 242 SVQGVTPLHLAAQ 254
Score = 86.0 bits (214), Expect = 6e-21
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 14/133 (10%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
G + +PL +A+ G V L++ A+ + ++ LH+ GH
Sbjct: 4 GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARA--GHT- 60
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
EVA L + +N K K +PLH A+R GH ++ L+ A NL
Sbjct: 61 ----EVAKYLL-----QNKAK--VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLA 109
Query: 123 NNSNESPLHLAAR 135
+ +PLH+AAR
Sbjct: 110 TTAGHTPLHIAAR 122
Score = 84.9 bits (211), Expect = 1e-20
Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 14/133 (10%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
A+ N+ +PL +AA G +TVL L+ +A+ LH+ G +
Sbjct: 103 NANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKY--GKV- 159
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
VA + L + N K G +PLH A ++ ++ L+ G +
Sbjct: 160 ----RVAELLL-----ERDAH--PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSP 208
Query: 123 NNSNESPLHLAAR 135
+ +PLH+AA+
Sbjct: 209 AWNGYTPLHIAAK 221
Score = 81.8 bits (203), Expect = 2e-19
Identities = 35/133 (26%), Positives = 56/133 (42%), Gaps = 14/133 (10%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GA NV + + +PL +AA G + L++NKA + K + + LH G
Sbjct: 37 GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIG----- 91
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
+ + L N G +PLH A+REGH+ ++ L+ A
Sbjct: 92 --HTNMVKLLL-----ENNAN--PNLATTAGHTPLHIAAREGHVETVLALLEKEASQACM 142
Query: 123 NNSNESPLHLAAR 135
+PLH+AA+
Sbjct: 143 TKKGFTPLHVAAK 155
Score = 80.6 bits (200), Expect = 4e-19
Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 14/133 (10%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
G + +PL +AA + + +L++ + + + LHL GH
Sbjct: 202 GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQE--GHA- 258
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
E+ A+ L S+ N +K+G +PLH ++EGH+ + LI G ++
Sbjct: 259 ----EMVALLL-----SKQAN--GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDAT 307
Query: 123 NNSNESPLHLAAR 135
+PLH+A+
Sbjct: 308 TRMGYTPLHVASH 320
Score = 80.6 bits (200), Expect = 4e-19
Identities = 33/133 (24%), Positives = 55/133 (41%), Gaps = 14/133 (10%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
A+ N+ +K +PL L A G L+++ + LH+ G +I
Sbjct: 268 QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYG--NI- 324
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
++ L +N K K G SPLH A+++GH + L+ GA N
Sbjct: 325 ----KLVKFLL-----QHQAD--VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEV 373
Query: 123 NNSNESPLHLAAR 135
++ +PL +A R
Sbjct: 374 SSDGTTPLAIAKR 386
Score = 71.0 bits (175), Expect = 1e-15
Identities = 26/134 (19%), Positives = 51/134 (38%), Gaps = 17/134 (12%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
G ++ + +PL +A+ G K V L++++A++ K + LH G H
Sbjct: 301 GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQG--HT- 357
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGH---IISLENLINLGACI 119
++ + L G NE G +PL A R G+ L+ + + + +
Sbjct: 358 ----DIVTLLL-----KNGAS--PNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFV 406
Query: 120 NLKNNSNESPLHLA 133
+ + S
Sbjct: 407 LVSDKHRMSFPETV 420
Score = 60.2 bits (147), Expect = 7e-12
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 78 ASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
S GI ++G +PLH AS GH+ ++NL+ GA N+ N E+PLH+AAR
Sbjct: 1 GSPGIS--GGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAAR 56
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 85.3 bits (212), Expect = 7e-21
Identities = 24/137 (17%), Positives = 52/137 (37%), Gaps = 11/137 (8%)
Query: 1 MTGADLNVLDKEKRSPLLLAASRGGW--KTVLTLVRNKANILLKDINRRNILHLLVLNGG 58
+ +V + ++ L G + + LV+ A+ KD L +
Sbjct: 126 VNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFR- 184
Query: 59 GHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGAC 118
+ E + + + ++ L+ +K G S LH+A + +G
Sbjct: 185 -NR-----EALDLMMDTVPSKSSLR--LDYANKQGNSHLHWAILINWEDVAMRFVEMGID 236
Query: 119 INLKNNSNESPLHLAAR 135
+N+++N + PL+L+ R
Sbjct: 237 VNMEDNEHTVPLYLSVR 253
Score = 73.7 bits (182), Expect = 9e-17
Identities = 15/139 (10%), Positives = 34/139 (24%), Gaps = 13/139 (9%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
L+ +K+ S L A + V ++ ++D L+L V +
Sbjct: 201 SLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAA--MV- 257
Query: 63 EFAEEVAAVFLGEGEASQGIQNLL------NEKDKTGCSPLHYASREGHIISLENLINLG 116
+ L + + + A+ L+ L
Sbjct: 258 ----LLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKL 313
Query: 117 ACINLKNNSNESPLHLAAR 135
+ N+ +
Sbjct: 314 DEVVRSLNTGAGGAVKRKK 332
Score = 72.2 bits (178), Expect = 4e-16
Identities = 19/137 (13%), Positives = 40/137 (29%), Gaps = 13/137 (9%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
G D+N+ D E PL L+ L++ L++ N +L
Sbjct: 234 GIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDF 293
Query: 63 EFA------EEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLG 116
A +EV + + + + TG ++ +
Sbjct: 294 VPAAADPSKQEVLQLLQ-----EKLDE--VVRSLNTGAGGAVKRKKKAAPAVKRMKLAPS 346
Query: 117 ACINLKNNSNESPLHLA 133
A + ++ S ++
Sbjct: 347 APVRTRSRSRARSSAVS 363
Score = 61.4 bits (150), Expect = 3e-12
Identities = 21/133 (15%), Positives = 36/133 (27%), Gaps = 22/133 (16%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
+ D E + +AA +G V L+ + +++ LHL G +
Sbjct: 10 KLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKF--GCV- 66
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
+ A GE G P+H A + L+
Sbjct: 67 ----DTAKYLASVGE---------VHSLWHGQKPIHLAVMANKTDLVVALVEGAK----- 108
Query: 123 NNSNESPLHLAAR 135
+ P L
Sbjct: 109 -ERGQMPESLLNE 120
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 83.7 bits (208), Expect = 2e-20
Identities = 36/134 (26%), Positives = 52/134 (38%), Gaps = 15/134 (11%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLT-LVRNKANILLKDINRRNILHLLVLNGGGHI 61
A + + K+ LL AA G + ++ L N D + LHL +
Sbjct: 14 SAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYN--RV 71
Query: 62 KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINL 121
+ + L G ++ KDK G PLH A GH E L+ GAC+N
Sbjct: 72 -----RIVQLLL-----QHGAD--VHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNA 119
Query: 122 KNNSNESPLHLAAR 135
+ +PLH AA
Sbjct: 120 MDLWQFTPLHEAAS 133
Score = 77.5 bits (192), Expect = 4e-18
Identities = 34/154 (22%), Positives = 56/154 (36%), Gaps = 32/154 (20%)
Query: 3 GADLNVLDKEKRSPL---------------------LLAASRGGWKTVLTLVRNKANILL 41
GAD +++ +S + L AA V + +
Sbjct: 147 GADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFK 206
Query: 42 KDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYAS 101
+ + LH V + K+ AE L +G +NEK+K +PLH A+
Sbjct: 207 QPQSHETALHCAVASLHPKRKQVAE-----LL----LRKGAN--VNEKNKDFMTPLHVAA 255
Query: 102 REGHIISLENLINLGACINLKNNSNESPLHLAAR 135
H +E L GA +N ++ ++ LH AA
Sbjct: 256 ERAHNDVMEVLHKHGAKMNALDSLGQTALHRAAL 289
Score = 75.2 bits (186), Expect = 3e-17
Identities = 24/135 (17%), Positives = 47/135 (34%), Gaps = 17/135 (12%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWK---TVLTLVRNKANILLKDINRRNILHLLVLNGGG 59
+ + L A + K L+R AN+ K+ + LH+
Sbjct: 201 EIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERA-- 258
Query: 60 HIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACI 119
H +V V G + +N D G + LH A+ GH+ + L++ G+
Sbjct: 259 HN-----DVMEVLH-----KHGAK--MNALDSLGQTALHRAALAGHLQTCRLLLSYGSDP 306
Query: 120 NLKNNSNESPLHLAA 134
++ + + +
Sbjct: 307 SIISLQGFTAAQMGN 321
Score = 71.0 bits (175), Expect = 8e-16
Identities = 22/109 (20%), Positives = 42/109 (38%), Gaps = 13/109 (11%)
Query: 27 KTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLL 86
K+ L L A +L +++ L +G E++ A+ +
Sbjct: 5 KSALDLADPSAKAVLTGEYKKDELLEAARSGN------EEKLMALLT-----PLNVN--C 51
Query: 87 NEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
+ D +PLH A+ + ++ L+ GA ++ K+ PLH A
Sbjct: 52 HASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACS 100
Score = 66.0 bits (162), Expect = 5e-14
Identities = 23/133 (17%), Positives = 49/133 (36%), Gaps = 21/133 (15%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GA++N +K+ +PL +AA R + L ++ A + D + LH L G H+
Sbjct: 237 GANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAG--HL- 293
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
+ + L S G + G + + + +++ +
Sbjct: 294 ----QTCRLLL-----SYGSD--PSIISLQGFTAAQMGNEAV-----QQILSESTPMRTS 337
Query: 123 NNSNESPLHLAAR 135
+ + L A++
Sbjct: 338 DV--DYRLLEASK 348
Score = 65.6 bits (161), Expect = 8e-14
Identities = 30/154 (19%), Positives = 48/154 (31%), Gaps = 35/154 (22%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD++ DK PL A S G ++ L+++ A + D+ + LH +
Sbjct: 81 GADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASK--NRV- 137
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLIN-------- 114
EV ++ L S G + G S + A L
Sbjct: 138 ----EVCSLLL-----SHGAD--PTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAA 186
Query: 115 -------------LGACINLKNNSNESPLHLAAR 135
L + S+E+ LH A
Sbjct: 187 READLAKVKKTLALEIINFKQPQSHETALHCAVA 220
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium,
SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo
sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 79.7 bits (198), Expect = 5e-20
Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 14/133 (10%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
+N D+E +PL+ AA+ G V L++N A+ L R + L L G+
Sbjct: 26 ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSK--GYT- 82
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
++ + L G +NE D G +PL YA H+ ++ L+ GA ++
Sbjct: 83 ----DIVKMLLDCG-VD------VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIE 131
Query: 123 NNSNESPLHLAAR 135
+S + + LA
Sbjct: 132 TDSGYNSMDLAVA 144
Score = 69.3 bits (171), Expect = 4e-16
Identities = 23/122 (18%), Positives = 40/122 (32%), Gaps = 14/122 (11%)
Query: 14 RSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFL 73
+ A++G + T + + I D L + G I V L
Sbjct: 4 SLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAH--GQI-----AVVEFLL 56
Query: 74 GEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLA 133
G A K S L A +G+ ++ L++ G +N + + +PL A
Sbjct: 57 QNG-AD------PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYA 109
Query: 134 AR 135
Sbjct: 110 VH 111
Score = 63.9 bits (157), Expect = 4e-14
Identities = 24/122 (19%), Positives = 42/122 (34%), Gaps = 14/122 (11%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD +L K + S L LA S+G V L+ ++ D N L V H+
Sbjct: 59 GADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGN--HV- 115
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
+ + L G A + +G + + A G+ + + + +
Sbjct: 116 ----KCVKMLLESG-AD------PTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQN 164
Query: 123 NN 124
Sbjct: 165 IK 166
Score = 47.4 bits (114), Expect = 9e-08
Identities = 10/43 (23%), Positives = 17/43 (39%)
Query: 93 GCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
+H + +G ++ L I IN + +PL AA
Sbjct: 3 NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAA 45
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 80.9 bits (201), Expect = 7e-20
Identities = 37/133 (27%), Positives = 65/133 (48%), Gaps = 13/133 (9%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GA+++ +++R+PL+ AA + V L++ A + KD LHL GH
Sbjct: 34 GANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKK--GHY- 90
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
EV L S G + +N +D G +P+ +A+ H+ ++ L++ G+ IN++
Sbjct: 91 ----EVVQYLL-----SNGQMD-VNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIR 140
Query: 123 NNSNESPLHLAAR 135
+N LH AA
Sbjct: 141 DNEENICLHWAAF 153
Score = 77.1 bits (191), Expect = 2e-18
Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 14/132 (10%)
Query: 4 ADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKE 63
D+N D +P++ A V L+ ++I ++D LH +G +
Sbjct: 102 MDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSG--CV-- 157
Query: 64 FAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKN 123
++A + L + L+ + G SPLH A+RE + ++ + + LKN
Sbjct: 158 ---DIAEILL-----AAKCD--LHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKN 207
Query: 124 NSNESPLHLAAR 135
E+PL A+
Sbjct: 208 KEGETPLQCASL 219
Score = 75.1 bits (186), Expect = 1e-17
Identities = 33/134 (24%), Positives = 59/134 (44%), Gaps = 15/134 (11%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKA-NILLKDINRRNILHLLVLNGGGHI 61
GA ++ D E + L LAA +G ++ V L+ N ++ +D + H+
Sbjct: 67 GALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYK--HV 124
Query: 62 KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINL 121
++ + L S+G +N +D LH+A+ G + E L+ ++
Sbjct: 125 -----DLVKLLL-----SKGSD--INIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHA 172
Query: 122 KNNSNESPLHLAAR 135
N +SPLH+AAR
Sbjct: 173 VNIHGDSPLHIAAR 186
Score = 73.2 bits (181), Expect = 4e-17
Identities = 32/133 (24%), Positives = 56/133 (42%), Gaps = 15/133 (11%)
Query: 4 ADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKE 63
+ + + KRSPL AA G LV+ ANI ++R L N H+
Sbjct: 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAEN--NHL-- 57
Query: 64 FAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGAC-INLK 122
E + G ++ KD G + LH A+++GH ++ L++ G +N +
Sbjct: 58 ---EAVKYLI-----KAGAL--VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQ 107
Query: 123 NNSNESPLHLAAR 135
++ +P+ A
Sbjct: 108 DDGGWTPMIWATE 120
Score = 63.6 bits (156), Expect = 2e-13
Identities = 25/115 (21%), Positives = 44/115 (38%), Gaps = 14/115 (12%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
G+D+N+ D E+ L AA G L+ K ++ +I+ + LH+
Sbjct: 134 GSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAAREN--RY- 190
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGA 117
+ +FL S+ + K+K G +PL AS + S +
Sbjct: 191 ----DCVVLFL-----SRDSD--VTLKNKEGETPLQCASLNSQVWSALQMSKALQ 234
Score = 29.3 bits (67), Expect = 0.31
Identities = 7/36 (19%), Positives = 17/36 (47%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKAN 38
+D+ + +KE +PL A+ + L + + +
Sbjct: 200 DSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 81.4 bits (202), Expect = 7e-20
Identities = 25/134 (18%), Positives = 38/134 (28%), Gaps = 15/134 (11%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNI-LHLLVLNGGGHI 61
L + + +PL +A + V L A++ + LHL V
Sbjct: 148 RLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQ---- 203
Query: 62 KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINL 121
A V + L G + G +PL A + I L GA
Sbjct: 204 ---AASVLELLL-----KAGAD--PTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPE 253
Query: 122 KNNSNESPLHLAAR 135
SP +
Sbjct: 254 DGGDKLSPCSSSGS 267
Score = 72.2 bits (178), Expect = 2e-16
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 16/136 (11%)
Query: 2 TGADLNVLDKEKRSPLLLAASRGGWK-TVLTLVRNKANILLKDINRRNILHLLVLNGGGH 60
+ +P + + + + ++ + LH+ V++
Sbjct: 113 LTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIH--KD 170
Query: 61 IKEFAEEVAAVFLGEGEASQGIQNLLNEKDKT-GCSPLHYASREGHIISLENLINLGACI 119
E+ + G LN+ + T G +PLH A LE L+ GA
Sbjct: 171 A-----EMVRLLR-----DAGAD--LNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP 218
Query: 120 NLKNNSNESPLHLAAR 135
+ +PL A
Sbjct: 219 TARMYGGRTPLGSALL 234
Score = 62.2 bits (152), Expect = 8e-13
Identities = 27/143 (18%), Positives = 45/143 (31%), Gaps = 17/143 (11%)
Query: 3 GAD---LNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGG 59
A L++ + ++ L LAA G TV L A +L+ + LHL
Sbjct: 32 SAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVR-- 89
Query: 60 HIKEFAEEVAAVFLGEG------EASQGIQNLLNEKDKTGCSPLHYASRE-GHIISLENL 112
A A V L + + + T +P S+
Sbjct: 90 -----AHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRD 144
Query: 113 INLGACINLKNNSNESPLHLAAR 135
+ + +N +PLH+A
Sbjct: 145 EDWRLQLEAENYDGHTPLHVAVI 167
Score = 57.6 bits (140), Expect = 5e-11
Identities = 20/130 (15%), Positives = 36/130 (27%), Gaps = 44/130 (33%)
Query: 6 LNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFA 65
+ ++ + L LA + L+ A
Sbjct: 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGH-------------------------- 35
Query: 66 EEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNS 125
L+ ++ G + LH A+ G ++E L GA + +
Sbjct: 36 ------------------EYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERG 77
Query: 126 NESPLHLAAR 135
+ LHLA R
Sbjct: 78 GHTALHLACR 87
Score = 55.2 bits (134), Expect = 3e-10
Identities = 20/104 (19%), Positives = 34/104 (32%), Gaps = 15/104 (14%)
Query: 3 GADLNVLDKEK-RSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHI 61
GADLN + R+PL LA + L++ A+ + R L +L +
Sbjct: 181 GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRP--NP 238
Query: 62 KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGH 105
+A + + G E SP + +
Sbjct: 239 -----ILARLLR-----AHGAP--EPEDGGDKLSPCSSSGSDSD 270
Score = 54.5 bits (132), Expect = 6e-10
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 85 LLNEKDKTGCSPLHYASREGHIISLENLINLGA---CINLKNNSNESPLHLAAR 135
+ + G + LH A H L+ L+ A ++L+N+ ++ LHLAA
Sbjct: 1 VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAI 54
Score = 40.6 bits (96), Expect = 4e-05
Identities = 11/65 (16%), Positives = 19/65 (29%), Gaps = 3/65 (4%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD R+PL A R L + A ++ + +
Sbjct: 215 GADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSD--SD-S 271
Query: 63 EFAEE 67
+ +E
Sbjct: 272 DNRDE 276
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 79.8 bits (198), Expect = 1e-19
Identities = 32/134 (23%), Positives = 59/134 (44%), Gaps = 14/134 (10%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
DLN + + + L LA + ++ L+ N A++ +KD + LH G +
Sbjct: 97 KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVG--SL- 153
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLI-NLGACINL 121
++ + G G+++ +N +DK G +PL +A EGH + L+ GA +L
Sbjct: 154 ----KLIELLCGLGKSA------VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDL 203
Query: 122 KNNSNESPLHLAAR 135
+N +A
Sbjct: 204 VDNKGAKAEDVALN 217
Score = 74.8 bits (185), Expect = 1e-17
Identities = 31/136 (22%), Positives = 53/136 (38%), Gaps = 15/136 (11%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRN---ILHLLVLNGGG 59
+ L D++ R PL + S + L+ N+ L D + H+ G
Sbjct: 26 PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVG-- 83
Query: 60 HIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACI 119
++ EV + ++ LN+ G + LH A + + LI GA +
Sbjct: 84 NL-----EVVKSLY-----DRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV 133
Query: 120 NLKNNSNESPLHLAAR 135
+K+ N+ PLH AA
Sbjct: 134 RIKDKFNQIPLHRAAS 149
Score = 69.4 bits (171), Expect = 1e-15
Identities = 32/139 (23%), Positives = 52/139 (37%), Gaps = 20/139 (14%)
Query: 3 GADLNV---LDKEKRSPLLLAASRGGWKTVLTLVRN--KANILLKDINRRNILHLLVLNG 57
++N+ D +P +A S G + V +L K ++ LHL V
Sbjct: 59 MENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKK 118
Query: 58 GGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLG- 116
EV+ + G + KDK PLH A+ G + +E L LG
Sbjct: 119 --WF-----EVSQFLI-----ENGAS--VRIKDKFNQIPLHRAASVGSLKLIELLCGLGK 164
Query: 117 ACINLKNNSNESPLHLAAR 135
+ +N ++ +PL A
Sbjct: 165 SAVNWQDKQGWTPLFHALA 183
Score = 66.3 bits (163), Expect = 2e-14
Identities = 31/126 (24%), Positives = 49/126 (38%), Gaps = 16/126 (12%)
Query: 14 RSPLLLAASRGGWKTVLT-LVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVF 72
PL A + V L + +L KD + R LH V E+ +
Sbjct: 3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSF--QAH-----EITSFL 55
Query: 73 LGEGEASQGIQ-NLLNEKDKTGCSPLHYASREGHIISLENLIN--LGACINLKNNSNESP 129
L S+ NL + D +G +P H A G++ +++L + L +N N +
Sbjct: 56 L-----SKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTC 110
Query: 130 LHLAAR 135
LHLA
Sbjct: 111 LHLAVG 116
Score = 47.4 bits (114), Expect = 1e-07
Identities = 23/105 (21%), Positives = 36/105 (34%), Gaps = 14/105 (13%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRN-KANILLKDINRRNILHLLVLNGGGHI 61
GA + + DK + PL AAS G K + L K+ + +D L + G H
Sbjct: 130 GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEG--HG 187
Query: 62 KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHI 106
+ A + + + A + D G A E
Sbjct: 188 -----DAAVLLVEKYGAE------YDLVDNKGAKAEDVALNEQVK 221
Score = 46.3 bits (111), Expect = 4e-07
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 93 GCSPLHYASREGHIISL-ENLINLGACINLKNNSNESPLHLAAR 135
PLH A E + E L + + + K+ PLH +
Sbjct: 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVS 45
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 78.9 bits (195), Expect = 2e-19
Identities = 29/129 (22%), Positives = 45/129 (34%), Gaps = 13/129 (10%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLT------LVRNKANILLKDINRRNILHLLVLN 56
GAD+ KE + GG T + A+I + ++ + N
Sbjct: 65 GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFN 124
Query: 57 GGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLG 116
E +F G+Q L KDK G + L + R I+L+ + +
Sbjct: 125 YFVDENEMIPLYKLIFS-----QSGLQ--LLIKDKWGLTALEFVKRCQKPIALKMMEDYI 177
Query: 117 ACINLKNNS 125
NLK NS
Sbjct: 178 KKYNLKENS 186
Score = 63.2 bits (154), Expect = 1e-13
Identities = 17/131 (12%), Positives = 38/131 (29%), Gaps = 17/131 (12%)
Query: 11 KEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAA 70
+ + AA G ++ L L K+ ++ + VL E +++
Sbjct: 4 MSEYRTVSAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNN--DEARYKISM 59
Query: 71 VFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGH------IISLENLINLGACINLKNN 124
+ +G A + + K G + + G + + GA I
Sbjct: 60 FLINKG-AD------IKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYK 112
Query: 125 SNESPLHLAAR 135
+ +
Sbjct: 113 PYKIVVFKNIF 123
Score = 61.6 bits (150), Expect = 5e-13
Identities = 20/145 (13%), Positives = 37/145 (25%), Gaps = 22/145 (15%)
Query: 3 GADLNVLDKEKRSPLLLAA-----SRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNG 57
G + + +S +L +K + L+ A+I + + L G
Sbjct: 29 GYEDK--ESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGG 86
Query: 58 GGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLEN------ 111
G I E E A + K + + E
Sbjct: 87 GNDITGTTELCK--IFLEKGAD------ITALYKPYKIVVFKNIFNYFVDENEMIPLYKL 138
Query: 112 -LINLGACINLKNNSNESPLHLAAR 135
G + +K+ + L R
Sbjct: 139 IFSQSGLQLLIKDKWGLTALEFVKR 163
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 78.6 bits (195), Expect = 3e-19
Identities = 35/134 (26%), Positives = 57/134 (42%), Gaps = 15/134 (11%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKA-NILLKDINRRNILHLLVLNGGGHI 61
AD N+ D R+PL A S L+RN+A ++ + + L L
Sbjct: 48 SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLA---- 103
Query: 62 KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINL 121
E + + + +N D G S LH+A+ ++ + L+ GA ++
Sbjct: 104 ---VEGMLEDLI-----NSHAD--VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM 153
Query: 122 KNNSNESPLHLAAR 135
+NN E+PL LAAR
Sbjct: 154 QNNREETPLFLAAR 167
Score = 77.8 bits (193), Expect = 7e-19
Identities = 36/134 (26%), Positives = 55/134 (41%), Gaps = 14/134 (10%)
Query: 3 GADL-NVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHI 61
GA L N D+ + L LAA L+ A+ ++D R LH V
Sbjct: 14 GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSAD---- 69
Query: 62 KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINL 121
A+ V + + + L+ + G +PL A+R LE+LIN A +N
Sbjct: 70 ---AQGVFQILI-----RNRATD-LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA 120
Query: 122 KNNSNESPLHLAAR 135
++ +S LH AA
Sbjct: 121 VDDLGKSALHWAAA 134
Score = 76.7 bits (190), Expect = 2e-18
Identities = 26/133 (19%), Positives = 53/133 (39%), Gaps = 14/133 (10%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
DL+ + +PL+LAA + L+ + A++ D ++ LH
Sbjct: 82 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN---- 137
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
+ A V L G + ++ +PL A+REG + + L++ A ++
Sbjct: 138 ---VDAAVVLL-----KNGAN--KDMQNNREETPLFLAAREGSYETAKVLLDHFANRDIT 187
Query: 123 NNSNESPLHLAAR 135
++ + P +A
Sbjct: 188 DHMDRLPRDIAQE 200
Score = 63.2 bits (155), Expect = 2e-13
Identities = 24/118 (20%), Positives = 37/118 (31%), Gaps = 14/118 (11%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
AD+N +D +S L AA+ + L++N AN +++ L L G
Sbjct: 115 HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREG--SY- 171
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACIN 120
E A V L + D P A H + L +
Sbjct: 172 ----ETAKVLL-----DHFAN--RDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS 218
Score = 59.7 bits (146), Expect = 4e-12
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 11/78 (14%)
Query: 58 GGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGA 117
G V + F+ QG +L N+ D+TG + LH A+R + + L+ A
Sbjct: 1 GDA-----PAVISDFI-----YQGA-SLHNQTDRTGETALHLAARYSRSDAAKRLLEASA 49
Query: 118 CINLKNNSNESPLHLAAR 135
N+++N +PLH A
Sbjct: 50 DANIQDNMGRTPLHAAVS 67
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 79.5 bits (197), Expect = 5e-19
Identities = 34/146 (23%), Positives = 56/146 (38%), Gaps = 13/146 (8%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GA++N D E PL AAS G L+ A++ + L + +
Sbjct: 96 GANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELL 155
Query: 63 EF------AEEVAAVFLGEGEASQGIQNLL-------NEKDKTGCSPLHYASREGHIISL 109
+ + AA E + + L K+G + LH A+ +G+ L
Sbjct: 156 QNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVL 215
Query: 110 ENLINLGACINLKNNSNESPLHLAAR 135
+ LI +N+K+ +PLH AA
Sbjct: 216 KLLIQARYDVNIKDYDGWTPLHAAAH 241
Score = 72.1 bits (178), Expect = 3e-16
Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 15/133 (11%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
V + + L A S G + VL L+ A+I +++ LH ++ ++
Sbjct: 31 RKKTKVKFDD-GAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDD--NV- 86
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
++ + G +N+ D G PLH A+ G++ E LI+ GA +
Sbjct: 87 ----DMVKFLV-----ENGAN--INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAV 135
Query: 123 NNSNESPLHLAAR 135
N+ ++PL +A
Sbjct: 136 NSEGDTPLDIAEE 148
Score = 70.6 bits (174), Expect = 1e-15
Identities = 26/153 (16%), Positives = 49/153 (32%), Gaps = 27/153 (17%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLV-RNKANILLKDINRRNILHL----LVLNG 57
GA + ++ E +PL +A + + V R +I I+ + +G
Sbjct: 129 GAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSG 188
Query: 58 GGHIKE----------FA-----EEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASR 102
+ A EV + + +N KD G +PLH A+
Sbjct: 189 HINDVRHAKSGGTALHVAAAKGYTEVLKLLI-----QARYD--VNIKDYDGWTPLHAAAH 241
Query: 103 EGHIISLENLINLGACINLKNNSNESPLHLAAR 135
G + L+ + N ++ +A
Sbjct: 242 WGKEEACRILVENLCDMEAVNKVGQTAFDVADE 274
Score = 67.5 bits (166), Expect = 1e-14
Identities = 25/130 (19%), Positives = 47/130 (36%), Gaps = 15/130 (11%)
Query: 6 LNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFA 65
+ + D +++ L G + V + +K + + + G
Sbjct: 1 MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKF-DDGAVFLAACSS--GDT---- 53
Query: 66 EEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNS 125
E L +G +N + G + LH A + ++ ++ L+ GA IN +N
Sbjct: 54 -EEVLRLL-----ERGAD--INYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNE 105
Query: 126 NESPLHLAAR 135
PLH AA
Sbjct: 106 GWIPLHAAAS 115
Score = 59.1 bits (144), Expect = 1e-11
Identities = 17/122 (13%), Positives = 38/122 (31%), Gaps = 14/122 (11%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
+ K + L +AA++G + + L++ + ++ +KD + LH G
Sbjct: 189 HINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWG--KE- 245
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
E + + + +K G + A + E + K
Sbjct: 246 ----EACRILV-----ENLCD--MEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSEK 294
Query: 123 NN 124
Sbjct: 295 RE 296
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 77.1 bits (191), Expect = 6e-19
Identities = 35/133 (26%), Positives = 50/133 (37%), Gaps = 14/133 (10%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
DLN D SPL A G V L+ A I + + LHL +G H
Sbjct: 29 ENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHG--HR- 85
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
++ L +N ++ G PLHYA G E+L+ GA +++
Sbjct: 86 ----DIVQKLL-----QYKAD--INAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSIC 134
Query: 123 NNSNESPLHLAAR 135
N E P+ A
Sbjct: 135 NKYGEMPVDKAKA 147
Score = 68.2 bits (168), Expect = 1e-15
Identities = 30/132 (22%), Positives = 50/132 (37%), Gaps = 20/132 (15%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GA +NV+++ +PL LAAS G V L++ KA+I + + LH G
Sbjct: 62 GARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWG--QD- 118
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
+VA + + G ++ +K G P+ A + E +G +
Sbjct: 119 ----QVAEDLV-----ANGAL--VSICNKYGEMPVDKAKAPLRELLRERAEKMGQNL--- 164
Query: 123 NNSNESPLHLAA 134
N P
Sbjct: 165 ---NRIPYKDTF 173
Score = 63.6 bits (156), Expect = 9e-14
Identities = 28/127 (22%), Positives = 44/127 (34%), Gaps = 15/127 (11%)
Query: 10 DKEKRSPLLLAASRGGWKTVLTLVRNKANIL-LKDINRRNILHLLVLNGGGHIKEFAEEV 68
E + G V + N N L D + + LH G V
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACRE--GRS-----AV 54
Query: 69 AAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNES 128
+ + +G + +N ++ +PLH A+ GH ++ L+ A IN N
Sbjct: 55 VEMLI-----MRGAR--INVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNV 107
Query: 129 PLHLAAR 135
PLH A
Sbjct: 108 PLHYACF 114
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 78.3 bits (194), Expect = 8e-19
Identities = 35/134 (26%), Positives = 57/134 (42%), Gaps = 15/134 (11%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKA-NILLKDINRRNILHLLVLNGGGHI 61
AD N+ D R+PL A S L+RN+A ++ + + L L
Sbjct: 80 SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAV--- 136
Query: 62 KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINL 121
E + + + +N D G S LH+A+ ++ + L+ GA ++
Sbjct: 137 ----EGMLEDLI-----NSHAD--VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM 185
Query: 122 KNNSNESPLHLAAR 135
+NN E+PL LAAR
Sbjct: 186 QNNREETPLFLAAR 199
Score = 77.9 bits (193), Expect = 1e-18
Identities = 36/134 (26%), Positives = 55/134 (41%), Gaps = 14/134 (10%)
Query: 3 GADL-NVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHI 61
GA L N D+ + L LAA L+ A+ ++D R LH V
Sbjct: 46 GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSAD---- 101
Query: 62 KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINL 121
A+ V + + + L+ + G +PL A+R LE+LIN A +N
Sbjct: 102 ---AQGVFQILI-----RNRATD-LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA 152
Query: 122 KNNSNESPLHLAAR 135
++ +S LH AA
Sbjct: 153 VDDLGKSALHWAAA 166
Score = 74.8 bits (185), Expect = 2e-17
Identities = 26/133 (19%), Positives = 55/133 (41%), Gaps = 14/133 (10%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
DL+ + +PL+LAA + L+ + A++ D ++ LH ++
Sbjct: 114 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVN--NV- 170
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
+ A V L G + ++ +PL A+REG + + L++ A ++
Sbjct: 171 ----DAAVVLL-----KNGAN--KDMQNNREETPLFLAAREGSYETAKVLLDHFANRDIT 219
Query: 123 NNSNESPLHLAAR 135
++ + P +A
Sbjct: 220 DHMDRLPRDIAQE 232
Score = 65.6 bits (161), Expect = 4e-14
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 17/104 (16%)
Query: 43 DINRRNI-----LHLLVLNGGGHIKEFAE------EVAAVFLGEGEASQGIQNLLNEKDK 91
D+N R L + +GGG +E V + F+ QG +L N+ D+
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFI-----YQGA-SLHNQTDR 55
Query: 92 TGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
TG + LH A+R + + L+ A N+++N +PLH A
Sbjct: 56 TGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVS 99
Score = 64.8 bits (159), Expect = 8e-14
Identities = 24/121 (19%), Positives = 39/121 (32%), Gaps = 14/121 (11%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
AD+N +D +S L AA+ + L++N AN +++ L L G
Sbjct: 147 HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREG----- 201
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
+ E A V L + D P A H + L +
Sbjct: 202 --SYETAKVLL-----DHFAN--RDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHHHH 252
Query: 123 N 123
+
Sbjct: 253 H 253
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A {Synthetic
source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D*
3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B*
2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 76.2 bits (189), Expect = 9e-19
Identities = 39/133 (29%), Positives = 61/133 (45%), Gaps = 14/133 (10%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD+N D +PL LAA G + V L++N A++ D L L L G H+
Sbjct: 37 GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFG--HL- 93
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
E+ V L G +N D G +PLH A+ GH+ +E L+ GA +N +
Sbjct: 94 ----EIVEVLL-----KNGAD--VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQ 142
Query: 123 NNSNESPLHLAAR 135
+ ++ ++
Sbjct: 143 DKFGKTAFDISID 155
Score = 71.2 bits (176), Expect = 7e-17
Identities = 41/136 (30%), Positives = 60/136 (44%), Gaps = 15/136 (11%)
Query: 1 MTGADLNVL-DKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGG 59
M G+ + + LL AA G V L+ N A++ +D + LHL NG
Sbjct: 1 MRGSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNG-- 58
Query: 60 HIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACI 119
H+ E+ V L G +N D G +PL A+ GH+ +E L+ GA +
Sbjct: 59 HL-----EIVEVLL-----KNGAD--VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADV 106
Query: 120 NLKNNSNESPLHLAAR 135
N + +PLHLAA
Sbjct: 107 NANDMEGHTPLHLAAM 122
Score = 55.4 bits (135), Expect = 7e-11
Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 14/103 (13%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD+N +D +PL LAA G + V L++N A++ D+ LHL + G H+
Sbjct: 70 GADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFG--HL- 126
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGH 105
E+ V L G +N +DK G + + G+
Sbjct: 127 ----EIVEVLL-----KNGAD--VNAQDKFGKTAFDISIDNGN 158
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 77.5 bits (192), Expect = 1e-18
Identities = 27/134 (20%), Positives = 50/134 (37%), Gaps = 11/134 (8%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
G +L++ + +++PL LA V LV A+ + D + + HL +
Sbjct: 36 GRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHR----- 90
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
+ L L ++ G + LH A +++ L+ GA I+
Sbjct: 91 --SPTCLRALLDSAAPGTLD---LEARNYDGLTALHVAVNTECQETVQLLLERGADIDAV 145
Query: 123 NNSN-ESPLHLAAR 135
+ + SPL A
Sbjct: 146 DIKSGRSPLIHAVE 159
Score = 76.7 bits (190), Expect = 2e-18
Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 15/135 (11%)
Query: 2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDIN-RRNILHLLVLNGGGH 60
DL + + + L +A + +TV L+ A+I DI R+ L V N
Sbjct: 105 GTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENN--S 162
Query: 61 IKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACIN 120
+ + + L G +N + +G S LH AS G + + L+ GA +
Sbjct: 163 L-----SMVQLLL-----QHGAN--VNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSS 210
Query: 121 LKNNSNESPLHLAAR 135
LKN N++PL +A
Sbjct: 211 LKNCHNDTPLMVARS 225
Score = 65.6 bits (161), Expect = 4e-14
Identities = 26/138 (18%), Positives = 48/138 (34%), Gaps = 22/138 (15%)
Query: 6 LNVLDKEKRSPLLLAASRGGWKTVLTLV----RNKANILLKDINRRNILHLLVLNGGGHI 61
D++ +PL +A +G V LV + + + + R+ LHL V+
Sbjct: 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITT--L- 58
Query: 62 KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGAC--- 118
V + + + G D+ G + H A L L++ A
Sbjct: 59 ----PSVVRLLV-----TAGAS--PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTL 107
Query: 119 -INLKNNSNESPLHLAAR 135
+ +N + LH+A
Sbjct: 108 DLEARNYDGLTALHVAVN 125
Score = 60.2 bits (147), Expect = 4e-12
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 85 LLNEKDKTGCSPLHYASREGHIISLENLINL----GACINLKNNSNESPLHLAAR 135
+ D+ G +PLH A +G++ ++ L+NL G +++ NN ++PLHLA
Sbjct: 1 MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVI 55
Score = 57.1 bits (139), Expect = 4e-11
Identities = 25/116 (21%), Positives = 42/116 (36%), Gaps = 15/116 (12%)
Query: 3 GADLNVLD-KEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHI 61
GAD++ +D K RSPL+ A V L+++ AN+ + + + LH G +
Sbjct: 139 GADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRG--LL 196
Query: 62 KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGA 117
+ + G + K+ +PL A I L A
Sbjct: 197 -----PLVRTLV-----RSGAD--SSLKNCHNDTPLMVARSRRVIDILRGKATRPA 240
Score = 30.9 bits (71), Expect = 0.091
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKAN 38
GAD ++ + +PL++A SR + A+
Sbjct: 206 GADSSLKNCHNDTPLMVARSRRVIDILRGKATRPAS 241
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 74.8 bits (185), Expect = 2e-18
Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 16/134 (11%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
+++L + L AA+RG +TV L+ A+ + R + ++++ G
Sbjct: 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM---GSA- 57
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGC-SPLHYASREGHIISLENLINLGACINL 121
+VA + L G A N D P+H A+REG + +L L GA +++
Sbjct: 58 ----QVAELLLLHG-AE------PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDV 106
Query: 122 KNNSNESPLHLAAR 135
+ P+ LA
Sbjct: 107 CDAWGRLPVDLAEE 120
Score = 55.1 bits (134), Expect = 5e-11
Identities = 24/116 (20%), Positives = 37/116 (31%), Gaps = 16/116 (13%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNI-LHLLVLNGGGHI 61
GAD N L++ R P+ + G + L+ + A D +H G +
Sbjct: 35 GADPNALNRFGRRPIQVMM-MGSAQVAELLLLHGAEPNCADPATLTRPVHDAAREG--FL 91
Query: 62 KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGA 117
+ V G A L+ D G P+ A +GH L
Sbjct: 92 -----DTLVVLHRAG-AR------LDVCDAWGRLPVDLAEEQGHRDIARYLHAATG 135
Score = 32.0 bits (74), Expect = 0.022
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKAN 38
GA L+V D R P+ LA +G L +
Sbjct: 101 GARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 77.1 bits (191), Expect = 2e-18
Identities = 33/134 (24%), Positives = 54/134 (40%), Gaps = 14/134 (10%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD +++D E S + LAA G V L+ ++ + D N L H
Sbjct: 99 GADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRT--HSV 156
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKT-GCSPLHYASREGHIISLENLINLGACINL 121
+ L + + +N DK + LH+A G+ + L+ GA ++
Sbjct: 157 DPTR-----LL----LTFNVS--VNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDA 205
Query: 122 KNNSNESPLHLAAR 135
+N ES L LA +
Sbjct: 206 QNIKGESALDLAKQ 219
Score = 74.4 bits (184), Expect = 2e-17
Identities = 30/134 (22%), Positives = 50/134 (37%), Gaps = 15/134 (11%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNI-LHLLVLNGGGHI 61
G D+ DKE + L AA V + A + + + LH GH+
Sbjct: 32 GYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQ--GHL 89
Query: 62 KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINL 121
+ + G + D GCS +H A++ GH + LI G +++
Sbjct: 90 -----SMVVQLM-----KYGAD--PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDM 137
Query: 122 KNNSNESPLHLAAR 135
+ + +PL AA
Sbjct: 138 MDQNGMTPLMWAAY 151
Score = 67.1 bits (165), Expect = 1e-14
Identities = 28/131 (21%), Positives = 57/131 (43%), Gaps = 15/131 (11%)
Query: 6 LNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFA 65
+ +D ++ A G ++ LV ++ D +LH +N I
Sbjct: 2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAIN--NRI---- 55
Query: 66 EEVAAVFLGEGEASQGIQNLLNEKDK-TGCSPLHYASREGHIISLENLINLGACINLKNN 124
++ ++ S+G +++ +PLH+A+R+GH+ + L+ GA +L +
Sbjct: 56 -DLVKYYI-----SKGAI--VDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDG 107
Query: 125 SNESPLHLAAR 135
S +HLAA+
Sbjct: 108 EGCSCIHLAAQ 118
Score = 60.5 bits (148), Expect = 3e-12
Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 16/123 (13%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWK-TVLTLVRNKANILLKD-INRRNILHLLVLNGGGH 60
G D++++D+ +PL+ AA R L+ ++ L D ++ LH VL G +
Sbjct: 132 GQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAG--N 189
Query: 61 IKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACIN 120
V ++ L G ++ ++ G S L A + ++ + +L
Sbjct: 190 T-----TVISLLL-----EAGAN--VDAQNIKGESALDLAKQRKNVWMINHLQEARQAKG 237
Query: 121 LKN 123
N
Sbjct: 238 YDN 240
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 75.1 bits (186), Expect = 2e-18
Identities = 33/133 (24%), Positives = 52/133 (39%), Gaps = 15/133 (11%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GA D SPL LAA G + T L+R + + R LH+ G H
Sbjct: 25 GAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEG--HA- 80
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
+ V L G +N KD + LH+A+ H +E LI GA ++ +
Sbjct: 81 ----NIVEVLL-----KHGAD--VNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQ 129
Query: 123 NNSNESPLHLAAR 135
+ ++ ++
Sbjct: 130 SKFCKTAFDISID 142
Score = 69.0 bits (170), Expect = 5e-16
Identities = 35/120 (29%), Positives = 47/120 (39%), Gaps = 15/120 (12%)
Query: 16 PLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGE 75
LL AA G V L+ N A D + LHL G H V L
Sbjct: 5 KLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYG--HF-----STTEVLL-- 54
Query: 76 GEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
G+ + + K +PLH A+ EGH +E L+ GA +N K+ + LH A
Sbjct: 55 ---RAGVS--RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATE 109
Score = 56.2 bits (137), Expect = 3e-11
Identities = 22/103 (21%), Positives = 41/103 (39%), Gaps = 14/103 (13%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
G + K R+PL +AAS G V L+++ A++ KD+ + LH + H
Sbjct: 57 GVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHN--HQ- 113
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGH 105
EV + + G ++ + K + + G+
Sbjct: 114 ----EVVELLI-----KYGAD--VHTQSKFCKTAFDISIDNGN 145
Score = 45.5 bits (109), Expect = 3e-07
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 93 GCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
L A+R G + L+ GA + SPLHLAA+
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQ 43
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 77.1 bits (191), Expect = 2e-18
Identities = 20/133 (15%), Positives = 40/133 (30%), Gaps = 17/133 (12%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
G +++ +PL LA V L+ + A++ + + + LH +
Sbjct: 124 GGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVARTA--SE- 179
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
E+A + + G A K+ G P+ E + L + +L
Sbjct: 180 ----ELACLLMDFG-AD------TQAKNAEGKRPVELVPPESPLAQL--FLEREGPPSLM 226
Query: 123 NNSNESPLHLAAR 135
Sbjct: 227 QLCRLRIRKCFGI 239
Score = 74.4 bits (184), Expect = 3e-17
Identities = 32/133 (24%), Positives = 47/133 (35%), Gaps = 16/133 (12%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GA + + + SP+ AA RG + V +L+ NI K + L+L N
Sbjct: 92 GASVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQ--QR- 147
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
L G A + K SPLH +R L++ GA K
Sbjct: 148 ----ACVKKLLESG-ADV-------NQGKGQDSPLHAVARTASEELACLLMDFGADTQAK 195
Query: 123 NNSNESPLHLAAR 135
N + P+ L
Sbjct: 196 NAEGKRPVELVPP 208
Score = 72.5 bits (179), Expect = 1e-16
Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 15/133 (11%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
G +N++ + SPL A G V L+++ A + + L ++ G
Sbjct: 26 GWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVS--GSW- 82
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
+ + L G AS + + + SP+H A+R GH+ + +LI G I+ K
Sbjct: 83 ----DCVNLLLQHG-AS--V-----QPESDLASPIHEAARRGHVECVNSLIAYGGNIDHK 130
Query: 123 NNSNESPLHLAAR 135
+ +PL+LA
Sbjct: 131 ISHLGTPLYLACE 143
Score = 65.1 bits (160), Expect = 7e-14
Identities = 28/122 (22%), Positives = 47/122 (38%), Gaps = 15/122 (12%)
Query: 14 RSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFL 73
SP+ AA G ++ L+ + + + + LH L G H+ + L
Sbjct: 4 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGG--HL-----SCVKILL 56
Query: 74 GEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLA 133
G Q +N +PL A G + L+ GA + +++ SP+H A
Sbjct: 57 -----KHGAQ--VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESD-LASPIHEA 108
Query: 134 AR 135
AR
Sbjct: 109 AR 110
Score = 54.0 bits (131), Expect = 6e-10
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 92 TGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
+ SP+H A+ GH +SL NLI+ G +N+ + SPLH A
Sbjct: 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACL 45
Score = 53.2 bits (129), Expect = 1e-09
Identities = 17/115 (14%), Positives = 33/115 (28%), Gaps = 17/115 (14%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD+N K + SPL A + L+ A+ K+ + + L+
Sbjct: 157 GADVNQ-GKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPES----- 210
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGA 117
+A +FL + + H + ++
Sbjct: 211 ----PLAQLFLERE-GP------PSLMQLCRLRIRKCFGIQQHHKITKLVLPEDL 254
Score = 26.2 bits (59), Expect = 3.6
Identities = 2/39 (5%), Positives = 9/39 (23%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILL 41
+++ + + K ++ L
Sbjct: 220 EGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPEDLKQFL 258
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 76.5 bits (189), Expect = 2e-18
Identities = 25/133 (18%), Positives = 52/133 (39%), Gaps = 13/133 (9%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
+ + +PL AA RG + + N+ + D L+ GH
Sbjct: 63 SNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHG--GH-- 118
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
+++ + + LN+++K G + LH A+ +G+ ++ L+ GA +L+
Sbjct: 119 ---KDIVEMLFTQPNIE------LNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLR 169
Query: 123 NNSNESPLHLAAR 135
N + +A
Sbjct: 170 NIEKKLAFDMATN 182
Score = 75.0 bits (185), Expect = 8e-18
Identities = 25/134 (18%), Positives = 45/134 (33%), Gaps = 20/134 (14%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
D+ + + S+G T + + + + N LH G++
Sbjct: 35 EGDIIYITDMSDTNWWKGTSKG-----RTGLIPSNYVAEQAESIDNPLHEAAKR--GNL- 86
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLI-NLGACINL 121
L + +N DK G + L++A GH +E L +N
Sbjct: 87 ----SWLRECL-----DNRVG--VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQ 135
Query: 122 KNNSNESPLHLAAR 135
+N ++ LH AA
Sbjct: 136 QNKLGDTALHAAAW 149
Score = 69.6 bits (171), Expect = 1e-15
Identities = 19/134 (14%), Positives = 38/134 (28%), Gaps = 15/134 (11%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNK-ANILLKDINRRNILHLLVLNGGGHI 61
+N LDK + L A G V L + ++ LH G +
Sbjct: 96 RVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKG--YA 153
Query: 62 KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINL 121
++ + L ++G + + ++ A+ L+ A L
Sbjct: 154 -----DIVQLLL-----AKGAR--TDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTL 201
Query: 122 KNNSNESPLHLAAR 135
N + +
Sbjct: 202 SNAEDYLDDEDSDL 215
Score = 66.1 bits (162), Expect = 2e-14
Identities = 17/130 (13%), Positives = 39/130 (30%), Gaps = 19/130 (14%)
Query: 6 LNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFA 65
K + + A +T L + +I+
Sbjct: 5 PPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWK------------- 51
Query: 66 EEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNS 125
G N + E+ ++ +PLH A++ G++ L ++ +N + +
Sbjct: 52 ----GTSKGRTGLIPS--NYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKA 105
Query: 126 NESPLHLAAR 135
+ L+ A
Sbjct: 106 GSTALYWACH 115
Score = 47.2 bits (113), Expect = 2e-07
Identities = 15/103 (14%), Positives = 28/103 (27%), Gaps = 14/103 (13%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
+LN +K + L AA +G V L+ A L++I ++ +
Sbjct: 130 NIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAA--CA- 186
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGH 105
+ G + + E H
Sbjct: 187 ----SLLKKKQGTDAV-------RTLSNAEDYLDDEDSDLEHH 218
Score = 35.3 bits (82), Expect = 0.003
Identities = 9/58 (15%), Positives = 17/58 (29%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGH 60
GA ++ + EK+ +A + + A L + L H
Sbjct: 163 GARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHHHH 220
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 78.1 bits (192), Expect = 2e-18
Identities = 27/134 (20%), Positives = 48/134 (35%), Gaps = 2/134 (1%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
L + D R+ L G + +IL+ I ++ + K
Sbjct: 191 YPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESK 250
Query: 63 EFAEEVAAVFLGEGEASQG--IQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACIN 120
+ I N+LN +D G + L+ A+R G+I ++ L++ GA
Sbjct: 251 PNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPF 310
Query: 121 LKNNSNESPLHLAA 134
+ N S P+ A
Sbjct: 311 IANKSGLRPVDFGA 324
Score = 59.7 bits (144), Expect = 1e-11
Identities = 22/139 (15%), Positives = 55/139 (39%), Gaps = 6/139 (4%)
Query: 3 GADLNVLDKEKRSPLLLAASRG---GWKTVLTLVR-NKANILLKDINRRNILHLLVLNGG 58
G++ D S L+ A T L+ ++L+D R ILH +++ G
Sbjct: 154 GSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSG 213
Query: 59 GHIKEFAEEVAAVFLGEGEASQGIQ--NLLNEKDKTGCSPLHYASREGHIISLENLINLG 116
A + L + + + ++ + + ++ + +L+ +
Sbjct: 214 MTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIA 273
Query: 117 ACINLKNNSNESPLHLAAR 135
+N ++++ ++ L++AAR
Sbjct: 274 NMLNAQDSNGDTCLNIAAR 292
Score = 58.1 bits (140), Expect = 3e-11
Identities = 21/146 (14%), Positives = 43/146 (29%), Gaps = 23/146 (15%)
Query: 2 TGADLNV-LDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGH 60
T +LN+ +D+ +PL S + V LV++ +N L D + L V + +
Sbjct: 119 TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNY 178
Query: 61 IKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYA----SREGHIIS-------- 108
E + L +D + LH+ G +
Sbjct: 179 DSGTFEAL---------LDYLYPC-LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDIL 228
Query: 109 LENLINLGACINLKNNSNESPLHLAA 134
+ ++ + +
Sbjct: 229 MGWIVKKQNRPIQSGTNEKESKPNDK 254
Score = 51.2 bits (122), Expect = 1e-08
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 86 LNEK-DKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
LN D+ G +PLH+ + ++ +++L+ G+ +N ES L A +
Sbjct: 123 LNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVK 173
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 75.9 bits (188), Expect = 2e-18
Identities = 27/133 (20%), Positives = 54/133 (40%), Gaps = 14/133 (10%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
++ +D E +PL +A + L+ A+I L++ + G
Sbjct: 29 TYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQ--GR-- 84
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLG-ACINL 121
E+ A L + LN+ ++ G + L A+ +GHI +++ L+ G I+
Sbjct: 85 ---TEILAYML-----KHATPD-LNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDF 135
Query: 122 KNNSNESPLHLAA 134
+N+ + L A
Sbjct: 136 QNDFGYTALIEAV 148
Score = 69.0 bits (170), Expect = 1e-15
Identities = 26/139 (18%), Positives = 59/139 (42%), Gaps = 19/139 (13%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKA-NILLKDINRRNILHLLVLNGGGHI 61
GAD+N+ + SP L A ++G + + ++++ ++ + N L G HI
Sbjct: 62 GADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKG--HI 119
Query: 62 KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYA-----SREGHIISLENLINLG 116
+ + L +G ++ ++ G + L A + + ++ L+ G
Sbjct: 120 -----DNVKLLLEDGRED------IDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENG 168
Query: 117 ACINLKNNSNESPLHLAAR 135
A ++K+NS + + A +
Sbjct: 169 ADQSIKDNSGRTAMDYANQ 187
Score = 68.2 bits (168), Expect = 2e-15
Identities = 26/127 (20%), Positives = 41/127 (32%), Gaps = 15/127 (11%)
Query: 10 DKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVA 69
E + L A R K L + D L++ V N I E+A
Sbjct: 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNN--DI-----EIA 55
Query: 70 AVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGAC-INLKNNSNES 128
+ +G +N ++ SP YA +G L ++ +N N +
Sbjct: 56 KALI-----DRGAD--INLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGN 108
Query: 129 PLHLAAR 135
L AA
Sbjct: 109 ALIPAAE 115
Score = 58.2 bits (142), Expect = 1e-11
Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 14/95 (14%)
Query: 41 LKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYA 100
+K +L ++V + Q ++E D G +PL+ A
Sbjct: 1 MKTYEVGALLEAANQRD-------TKKVKEILQ-----DTTYQ--VDEVDTEGNTPLNIA 46
Query: 101 SREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
I + LI+ GA INL+N+ ++SP A
Sbjct: 47 VHNNDIEIAKALIDRGADINLQNSISDSPYLYAGA 81
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 74.4 bits (184), Expect = 6e-18
Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 15/134 (11%)
Query: 3 GADL-NVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHI 61
G +L N D+ +PL+ A++ G +TV L+ A+ + R + L L G +
Sbjct: 25 GDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGG--Y- 81
Query: 62 KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINL 121
++ + L +N D G +PL YA R H+ +E L+ GA +
Sbjct: 82 ----TDIVGLLLERD-VD------INIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTT 130
Query: 122 KNNSNESPLHLAAR 135
+ +S +P+ LA
Sbjct: 131 EADSGYTPMDLAVA 144
Score = 68.2 bits (168), Expect = 1e-15
Identities = 29/127 (22%), Positives = 47/127 (37%), Gaps = 14/127 (11%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD ++L KE+ S L LA++ G V L+ +I + D N L V H+
Sbjct: 59 GADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGN--HV- 115
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
+ L G A + +G +P+ A G+ + + N +
Sbjct: 116 ----KCVEALLARG-ADL------TTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQS 164
Query: 123 NNSNESP 129
N P
Sbjct: 165 NLVPADP 171
Score = 64.0 bits (157), Expect = 6e-14
Identities = 25/121 (20%), Positives = 39/121 (32%), Gaps = 15/121 (12%)
Query: 16 PLLLAASRGGWKTVLTLVRNKAN-ILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLG 74
+ A++G + +R N + D L G I E L
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAF--GEI-----ETVRFLLE 57
Query: 75 EGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
G A + K S L AS G+ + L+ IN+ + + +PL A
Sbjct: 58 WG-AD------PHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAV 110
Query: 135 R 135
R
Sbjct: 111 R 111
Score = 44.7 bits (107), Expect = 9e-07
Identities = 8/44 (18%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 93 GCSPLHYASREGHIISLENLINLGA-CINLKNNSNESPLHLAAR 135
+H + +G + L+ + G +N + +PL A+
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASA 45
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 76.5 bits (189), Expect = 1e-17
Identities = 29/133 (21%), Positives = 42/133 (31%), Gaps = 8/133 (6%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
+ E L A+ G + + R NI+ + R +LH + N
Sbjct: 84 LQIPTEPEPESPIKLHTEAA-GSYAITEPITRESVNII-DPRHNRTVLHWIASNSSAEKS 141
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
E A A +N D +PL A + L+ GA +
Sbjct: 142 EDLIVHEAKECIAAGAD------VNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIY 195
Query: 123 NNSNESPLHLAAR 135
N S S LH AA
Sbjct: 196 NKSERSALHQAAA 208
Score = 76.1 bits (188), Expect = 2e-17
Identities = 28/145 (19%), Positives = 56/145 (38%), Gaps = 24/145 (16%)
Query: 2 TGADLNVLDKEKRSPLLLAASRGGWKTVLT---LVRNKANILL--------KDINRRNIL 50
D+ LD+ + L++ A G V + LV A + + R L
Sbjct: 224 LKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTAL 283
Query: 51 HLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLE 110
H ++ + +GE ++ +++D+ G +P+ A++EG I +
Sbjct: 284 HYAAQVS--NM-----PIVKYLVGEKGSN------KDKQDEDGKTPIMLAAQEGRIEVVM 330
Query: 111 NLINLGACINLKNNSNESPLHLAAR 135
LI GA + + ++ + LA
Sbjct: 331 YLIQQGASVEAVDATDHTARQLAQA 355
Score = 70.8 bits (174), Expect = 1e-15
Identities = 30/144 (20%), Positives = 57/144 (39%), Gaps = 22/144 (15%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD+N +D ++ +PL+LA + V L++ A+ + + + R+ LH N
Sbjct: 156 GADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANR----- 210
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGH---IISLENLINLGACI 119
+ L + I E D+ G + L + + S + L+ GA +
Sbjct: 211 --DFGMMVYMLNSTKLKGDI----EELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKV 264
Query: 120 NL--------KNNSNESPLHLAAR 135
+ + + LH AA+
Sbjct: 265 DYDGAARKDSEKYKGRTALHYAAQ 288
Score = 58.4 bits (142), Expect = 3e-11
Identities = 18/137 (13%), Positives = 31/137 (22%), Gaps = 24/137 (17%)
Query: 7 NVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAE 66
N L P G N + LH G
Sbjct: 55 NELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEA---AGSY----- 106
Query: 67 EVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHI--------ISLENLINLGAC 118
+ + + + + + LH+ + + I GA
Sbjct: 107 AITEPIT-----RESVN--IIDPRH-NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD 158
Query: 119 INLKNNSNESPLHLAAR 135
+N + +PL LA
Sbjct: 159 VNAMDCDENTPLMLAVL 175
Score = 51.5 bits (124), Expect = 7e-09
Identities = 18/133 (13%), Positives = 28/133 (21%), Gaps = 25/133 (18%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
+ + LL A+ G K NG +
Sbjct: 27 NRKNHQSITSSQHSLLEASYDGYIK---------RQRNELQHYSLYPNPQGYGNGNDFLG 77
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
+F + E + LH + G E + I
Sbjct: 78 DFNHTNLQI--------------PTEPEPESPIKLHTEA-AGSYAITEPITRESVNII-D 121
Query: 123 NNSNESPLHLAAR 135
N + LH A
Sbjct: 122 PRHNRTVLHWIAS 134
Score = 49.6 bits (119), Expect = 3e-08
Identities = 23/124 (18%), Positives = 37/124 (29%), Gaps = 23/124 (18%)
Query: 3 GADLNVL--------DKEKRSPLLLAASRGGWKTVLTLVRNK-ANILLKDINRRNILHLL 53
GA ++ + R+ L AA V LV K +N +D + + + L
Sbjct: 261 GAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLA 320
Query: 54 VLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLI 113
G I EV + QG + D T + A H ++
Sbjct: 321 AQEG--RI-----EVVMYLI-----QQGAS--VEAVDATDHTARQLAQANNHHNIVDIFD 366
Query: 114 NLGA 117
Sbjct: 367 RCRP 370
Score = 29.5 bits (67), Expect = 0.33
Identities = 10/67 (14%), Positives = 21/67 (31%), Gaps = 10/67 (14%)
Query: 69 AAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNES 128
A+V++ E + ++ + L AS +G+I N + +
Sbjct: 14 ASVWMPPMENEE-KNRKNHQSITSSQHSLLEASYDGYIKRQRNE---------LQHYSLY 63
Query: 129 PLHLAAR 135
P
Sbjct: 64 PNPQGYG 70
Score = 28.8 bits (65), Expect = 0.46
Identities = 7/37 (18%), Positives = 12/37 (32%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANI 39
GA + +D + LA + V R +
Sbjct: 336 GASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPER 372
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate
recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo
sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A
3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 73.2 bits (181), Expect = 1e-17
Identities = 32/133 (24%), Positives = 51/133 (38%), Gaps = 14/133 (10%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
+ ++ + +PL AA V L+++ A++ KD LH G H
Sbjct: 32 SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYG--HY- 88
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
EVA + + G +N D +PLH A+ +G + L+ GA K
Sbjct: 89 ----EVAELLV-----KHGAV--VNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKK 137
Query: 123 NNSNESPLHLAAR 135
N +PL L
Sbjct: 138 NRDGNTPLDLVKD 150
Score = 70.5 bits (174), Expect = 1e-16
Identities = 38/134 (28%), Positives = 50/134 (37%), Gaps = 18/134 (13%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNK-ANILLKDINRRNILHLLVLNGGGHI 61
GA N E LL AA G +TV L + N + + LH +
Sbjct: 1 GAMGN---SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYN--RV 55
Query: 62 KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINL 121
V L G ++ KDK G PLH A GH E L+ GA +N+
Sbjct: 56 -----SVVEYLL-----QHGAD--VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 103
Query: 122 KNNSNESPLHLAAR 135
+ +PLH AA
Sbjct: 104 ADLWKFTPLHEAAA 117
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 73.6 bits (182), Expect = 1e-17
Identities = 27/133 (20%), Positives = 52/133 (39%), Gaps = 14/133 (10%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
L D E + L+ A L+ +N+ KD + + L ++ G
Sbjct: 58 FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGY---- 113
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
E++ L G +N+++ G +PL AS+ G ++ L+ LGA I+ +
Sbjct: 114 ---SEMSYFLL-----EHGAN--VNDRNLEGETPLIVASKYGRSEIVKKLLELGADISAR 163
Query: 123 NNSNESPLHLAAR 135
+ + + A
Sbjct: 164 DLTGLTAEASARI 176
Score = 72.0 bits (178), Expect = 6e-17
Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 16/135 (11%)
Query: 3 GADL--NVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGH 60
D N D R+PL++A G + LV N + KDI L V N
Sbjct: 23 NLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNN--R 80
Query: 61 IKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACIN 120
+ +A L S+G +N KD +G +PL ++ G+ L+ GA +N
Sbjct: 81 L-----GIAEKLL-----SKGSN--VNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVN 128
Query: 121 LKNNSNESPLHLAAR 135
+N E+PL +A++
Sbjct: 129 DRNLEGETPLIVASK 143
Score = 61.6 bits (151), Expect = 6e-13
Identities = 20/129 (15%), Positives = 44/129 (34%), Gaps = 20/129 (15%)
Query: 7 NVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAE 66
+ +DK + + + + +D R L + + G
Sbjct: 2 SHMDKNGEIVEKIKDEKSINQNL------DFLRNYRDSYNRTPLMVACMLG--ME----- 48
Query: 67 EVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSN 126
+ + L +KD G + L +A + + E L++ G+ +N K+ S
Sbjct: 49 NAIDKLV-----ENFDK--LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSG 101
Query: 127 ESPLHLAAR 135
++PL +
Sbjct: 102 KTPLMWSII 110
Score = 53.5 bits (130), Expect = 6e-10
Identities = 19/104 (18%), Positives = 39/104 (37%), Gaps = 14/104 (13%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
G+++N D ++PL+ + G + L+ + AN+ +++ L + G
Sbjct: 91 GSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYG--RS- 147
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHI 106
E+ L G ++ +D TG + A G
Sbjct: 148 ----EIVKKLL-----ELGAD--ISARDLTGLTAEASARIFGRQ 180
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 75.2 bits (186), Expect = 2e-17
Identities = 35/147 (23%), Positives = 57/147 (38%), Gaps = 27/147 (18%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNI----------LHL 52
GAD+N D + + AA G K + L + AN+ L+ + + L
Sbjct: 95 GADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMD 154
Query: 53 LVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLEN- 111
G H+ EV + L E A +N D G + L +A +E
Sbjct: 155 AAEKG--HV-----EVLKILLDEMGAD------VNACDNMGRNALIHALLSSDDSDVEAI 201
Query: 112 ---LINLGACINLKNNSNESPLHLAAR 135
L++ GA +N++ ++PL LA
Sbjct: 202 THLLLDHGADVNVRGERGKTPLILAVE 228
Score = 73.7 bits (182), Expect = 6e-17
Identities = 31/145 (21%), Positives = 59/145 (40%), Gaps = 22/145 (15%)
Query: 3 GADLNVLDKEK----------RSPLLLAASRGGWKTVLTLVRNK-ANILLKDINRRNILH 51
GA++N+ K K + L+ AA +G + + L+ A++ D RN L
Sbjct: 128 GANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALI 187
Query: 52 LLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLEN 111
+L+ E + + L G +N + + G +PL A + H+ ++
Sbjct: 188 HALLSSD---DSDVEAITHLLL-----DHGAD--VNVRGERGKTPLILAVEKKHLGLVQR 237
Query: 112 LI-NLGACINLKNNSNESPLHLAAR 135
L+ IN ++ ++ L LA
Sbjct: 238 LLEQEHIEINDTDSDGKTALLLAVE 262
Score = 67.9 bits (167), Expect = 7e-15
Identities = 24/127 (18%), Positives = 42/127 (33%), Gaps = 15/127 (11%)
Query: 10 DKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNI-LHLLVLNGGGHIKEFAEEV 68
E L+ A V L+ AN+ ++ LH V E++
Sbjct: 2 AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMS--R-----EDI 54
Query: 69 AAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNES 128
+ L G + K G +P A+ G + L+ ++ GA +N + +
Sbjct: 55 VELLL-----RHGAD--PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFT 107
Query: 129 PLHLAAR 135
AA
Sbjct: 108 AFMEAAV 114
Score = 66.3 bits (163), Expect = 3e-14
Identities = 35/144 (24%), Positives = 60/144 (41%), Gaps = 25/144 (17%)
Query: 3 GADLNVLDKE-KRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHI 61
GA++N ++E +PL A V L+R+ A+ +L+ N L + G +
Sbjct: 28 GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAG--SV 85
Query: 62 KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINL 121
++ +FL S+G +NE D G + A+ G + +L+ L GA +NL
Sbjct: 86 -----KLLKLFL-----SKGAD--VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNL 133
Query: 122 KNNSNES----------PLHLAAR 135
+ + E L AA
Sbjct: 134 RRKTKEDQERLRKGGATALMDAAE 157
Score = 64.4 bits (158), Expect = 1e-13
Identities = 24/126 (19%), Positives = 42/126 (33%), Gaps = 17/126 (13%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVR----NKANILLKDINRRNILHLLVLNGG 58
GAD+N D R+ L+ A V + + A++ ++ + L L V
Sbjct: 172 GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKK- 230
Query: 59 GHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGAC 118
H+ + L + +N+ D G + L A E L GA
Sbjct: 231 -HL-----GLVQRLLEQEHIE------INDTDSDGKTALLLAVELKLKKIAELLCKRGAS 278
Query: 119 INLKNN 124
+ +
Sbjct: 279 TDCGDL 284
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 71.6 bits (177), Expect = 2e-17
Identities = 48/122 (39%), Positives = 66/122 (54%), Gaps = 14/122 (11%)
Query: 14 RSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFL 73
R+PL LAA G + V L+ A++ KD N R LHL NG H+ EV + L
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG--HL-----EVVKLLL 55
Query: 74 GEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLA 133
G +N KDK G +PLH A+R GH+ ++ L+ GA +N K+ + +PLHLA
Sbjct: 56 -----EAGAD--VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA 108
Query: 134 AR 135
AR
Sbjct: 109 AR 110
Score = 59.7 bits (146), Expect = 1e-12
Identities = 45/115 (39%), Positives = 60/115 (52%), Gaps = 14/115 (12%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD+N DK R+PL LAA G + V L+ A++ KD N R LHL NG H+
Sbjct: 25 GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG--HL- 81
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGA 117
EV + L G +N KDK G +PLH A+R GH+ ++ L+ GA
Sbjct: 82 ----EVVKLLL-----EAGAD--VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 51.2 bits (124), Expect = 2e-09
Identities = 20/43 (46%), Positives = 30/43 (69%)
Query: 93 GCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
G +PLH A+R GH+ ++ L+ GA +N K+ + +PLHLAAR
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR 44
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Length = 156
Score = 72.1 bits (178), Expect = 3e-17
Identities = 27/133 (20%), Positives = 55/133 (41%), Gaps = 16/133 (12%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
+ L++ ++ L + G L L++ A+ ++D + + +H G +
Sbjct: 26 LVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTG--FL- 81
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
+ V + G A +N D TG P+H A +EGH + L + ++ +
Sbjct: 82 ----DTLKVLVEHG-AD------VNVPDGTGALPIHLAVQEGHTAVVSFLAA-ESDLHRR 129
Query: 123 NNSNESPLHLAAR 135
+ +PL LA +
Sbjct: 130 DARGLTPLELALQ 142
Score = 67.1 bits (165), Expect = 3e-15
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 16/121 (13%)
Query: 16 PLLLAASRGGWKTVLTLV-RNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLG 74
L AA+RG + V L+ R + + + L +++ G +A L
Sbjct: 5 RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF---GST-----AIALELLK 56
Query: 75 EGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
+G AS N +D +G SP+H A+R G + +L+ L+ GA +N+ + + P+HLA
Sbjct: 57 QG-AS------PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAV 109
Query: 135 R 135
+
Sbjct: 110 Q 110
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 72.0 bits (178), Expect = 4e-17
Identities = 29/134 (21%), Positives = 51/134 (38%), Gaps = 16/134 (11%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
++N + R+ L G + L+ AN LKD ++H G +
Sbjct: 28 NVNVNAQNGFGRTALQ-VMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAG--FL- 83
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGAC-INL 121
+ L +N +D G PLH A++EGH+ +E L+ A +
Sbjct: 84 ----DTLQTLL-----EFQAD--VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGH 132
Query: 122 KNNSNESPLHLAAR 135
+N+ ++ LA
Sbjct: 133 RNHKGDTACDLARL 146
Score = 67.8 bits (167), Expect = 1e-15
Identities = 35/120 (29%), Positives = 63/120 (52%), Gaps = 15/120 (12%)
Query: 16 PLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGE 75
L AA+RG + + +L++N N+ ++ R L ++ L G+ E+A L
Sbjct: 8 ELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL---GNP-----EIARRLL-- 57
Query: 76 GEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
+G + KD+TG + +H A+R G + +L+ L+ A +N+++N PLHLAA+
Sbjct: 58 ---LRGAN--PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAK 112
Score = 61.2 bits (150), Expect = 5e-13
Identities = 23/115 (20%), Positives = 44/115 (38%), Gaps = 13/115 (11%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GA+ ++ D+ + + AA G T+ TL+ +A++ ++D LHL G H+
Sbjct: 60 GANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEG--HL- 116
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGA 117
V + N+ ++ G + A G + + GA
Sbjct: 117 ----RVVEFLV-----KHTASNV-GHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 73.7 bits (182), Expect = 6e-17
Identities = 32/133 (24%), Positives = 46/133 (34%), Gaps = 16/133 (12%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GA + + + SP+ AA RG + V +L+ NI K + L+L N
Sbjct: 148 GASVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQ--QR- 203
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
L G A + K SPLH R L++ GA K
Sbjct: 204 ----ACVKKLLESG-ADV-------NQGKGQDSPLHAVVRTASEELACLLMDFGADTQAK 251
Query: 123 NNSNESPLHLAAR 135
N + P+ L
Sbjct: 252 NAEGKRPVELVPP 264
Score = 72.1 bits (178), Expect = 2e-16
Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 15/133 (11%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
G +N++ + SPL A G V L+++ A + + L ++ G
Sbjct: 82 GWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVS--GSW- 138
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
+ + L G AS + + + SP+H A+R GH+ + +LI G I+ K
Sbjct: 139 ----DCVNLLLQHG-AS--V-----QPESDLASPIHEAARRGHVECVNSLIAYGGNIDHK 186
Query: 123 NNSNESPLHLAAR 135
+ +PL+LA
Sbjct: 187 ISHLGTPLYLACE 199
Score = 68.7 bits (169), Expect = 4e-15
Identities = 29/131 (22%), Positives = 48/131 (36%), Gaps = 15/131 (11%)
Query: 5 DLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEF 64
L SP+ AA G ++ L+ + + + + LH L G H+
Sbjct: 51 PLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGG--HL--- 105
Query: 65 AEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNN 124
+ L G Q +N +PL A G + L+ GA + +++
Sbjct: 106 --SCVKILL-----KHGAQ--VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESD 156
Query: 125 SNESPLHLAAR 135
SP+H AAR
Sbjct: 157 -LASPIHEAAR 166
Score = 66.0 bits (162), Expect = 5e-14
Identities = 25/117 (21%), Positives = 43/117 (36%), Gaps = 16/117 (13%)
Query: 19 LAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEA 78
+ +S LV +++ D + + ++F
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPA----GPRDFPGIRL--------- 47
Query: 79 SQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
+ N L + SP+H A+ GH +SL NLI+ G +N+ + SPLH A
Sbjct: 48 ---LSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACL 101
Score = 61.4 bits (150), Expect = 2e-12
Identities = 25/133 (18%), Positives = 47/133 (35%), Gaps = 16/133 (12%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
G+ + +D ++ + + L+ N ++ + +H ++G H
Sbjct: 18 GSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMG--DAVSDWSPMHEAAIHG--HQ- 72
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
+ SQG +N SPLH A GH+ ++ L+ GA +N
Sbjct: 73 ----LSLRNLI-----SQGWA--VNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGV 121
Query: 123 NNSNESPLHLAAR 135
+PL A
Sbjct: 122 TADWHTPLFNACV 134
Score = 57.5 bits (140), Expect = 4e-11
Identities = 22/118 (18%), Positives = 41/118 (34%), Gaps = 16/118 (13%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
G +++ +PL LA V L+ + A++ + + + LH +V
Sbjct: 180 GGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVVRTA--SE- 235
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACIN 120
E+A + + G K+ G P+ E + L L GA +
Sbjct: 236 ----ELACLLM-----DFGAD--TQAKNAEGKRPVELVPPESPLAQLF-LEREGASLP 281
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 72.9 bits (180), Expect = 1e-16
Identities = 23/135 (17%), Positives = 45/135 (33%), Gaps = 17/135 (12%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDIN-RRNILHLLVLNGGGHI 61
G D + D + + L A G +TV V+ ++ + + V+ +
Sbjct: 85 GLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLN--DV 142
Query: 62 KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINL 121
+ + FL E + S +H + GH+ + L++ N
Sbjct: 143 -----SIVSYFLSEIPS--------TFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNT 189
Query: 122 KNNSNESP-LHLAAR 135
N+ P + LA
Sbjct: 190 NNSLLFIPDIKLAID 204
Score = 68.3 bits (168), Expect = 5e-15
Identities = 20/134 (14%), Positives = 42/134 (31%), Gaps = 17/134 (12%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
D D S A + + V TL+ A L + LH
Sbjct: 21 SKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATL--EDT- 75
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
++ + L G ++ D G + L+YA G++ +++ + +
Sbjct: 76 ----KIVKILLFSG-LD------DSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFY 124
Query: 123 NNSN-ESPLHLAAR 135
+ ++ + A
Sbjct: 125 GKTGWKTSFYHAVM 138
Score = 54.1 bits (131), Expect = 7e-10
Identities = 14/118 (11%), Positives = 40/118 (33%), Gaps = 17/118 (14%)
Query: 18 LLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGE 77
L + K + + + + + D++ + + + + ++ + L
Sbjct: 4 LSRINTWKSKQLKSFL-SSKDTFKADVHGHSASYYAIADN--NV-----RLVCTLL---- 51
Query: 78 ASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
+ G N + PLH A+ ++ L+ G + ++ + L+ A
Sbjct: 52 -NAGAL--KNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVD 104
Score = 46.8 bits (112), Expect = 3e-07
Identities = 12/161 (7%), Positives = 32/161 (19%), Gaps = 43/161 (26%)
Query: 3 GADLNVLDKE-KRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHI 61
L K ++ A V + + + +H+ + NG H+
Sbjct: 118 NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF-DLAILLSCIHITIKNG--HV 174
Query: 62 KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSP------------------------- 96
++ + L N + P
Sbjct: 175 -----DMMILLL-----DYMTS--TNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIY 222
Query: 97 --LHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
+ +I + + + + +
Sbjct: 223 SANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNK 263
Score = 43.3 bits (103), Expect = 5e-06
Identities = 18/123 (14%), Positives = 35/123 (28%), Gaps = 22/123 (17%)
Query: 3 GADLNVLDKEKRSPLL-LAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHI 61
N + P + LA + + L + NI + VL
Sbjct: 184 MTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSAN-------LENVLLD---- 232
Query: 62 KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINL 121
E+A + + + ++ T + ++ IIS + L +
Sbjct: 233 ---DAEIAKMII-----EKHVE--YKSDSYTKDLDIVKNNKLDEIISKNKELRLMYVNCV 282
Query: 122 KNN 124
K N
Sbjct: 283 KKN 285
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 69.0 bits (170), Expect = 3e-16
Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 15/133 (11%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
G D + + L +A+ +G +V L++N ++ +KD LH +G H+
Sbjct: 1 GIDPFT-NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHG--HL- 56
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
+V + L A +N SPLH A++ GH+ ++ L++ GA N
Sbjct: 57 ----KVVELLLQHK-AL------VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAV 105
Query: 123 NNSNESPLHLAAR 135
N P+
Sbjct: 106 NIFGLRPVDYTDD 118
Score = 39.3 bits (93), Expect = 6e-05
Identities = 17/115 (14%), Positives = 24/115 (20%), Gaps = 47/115 (40%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
A +N + SPL AA G V L+ A+
Sbjct: 66 KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASR----------------------- 102
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGA 117
N + G P+ Y E L +
Sbjct: 103 ------------------------NAVNIFGLRPVDYTDDESMKSLLLLPEKNES 133
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR
{Escherichia coli}
Length = 115
Score = 68.2 bits (168), Expect = 4e-16
Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 16/129 (12%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
G K+ +PL AA G + V L+ A++ + + LHL NG H
Sbjct: 1 GHMWG--SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNG--HA- 55
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
E+ + L ++G +N + K G +P H A + GH ++ L GA +N +
Sbjct: 56 ----EIVKLLL-----AKGAD--VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNAR 104
Query: 123 NNSNESPLH 131
+ + H
Sbjct: 105 SWGSSHHHH 113
Score = 57.0 bits (139), Expect = 7e-12
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 87 NEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
N + K G +PLH A++ GH ++ L+ GA +N ++ +P HLA +
Sbjct: 36 NARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKK 84
Score = 53.9 bits (131), Expect = 1e-10
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 87 NEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
K G +PLH A++ GH ++ L++ GA +N ++ +PLHLAA+
Sbjct: 3 MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAK 51
Score = 47.4 bits (114), Expect = 4e-08
Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 14/97 (14%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD+N K+ +PL LAA G + V L+ A++ + + HL NG H
Sbjct: 32 GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNG--HH- 88
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHY 99
E+ + ++G +N + H+
Sbjct: 89 ----EIVKLLD-----AKGAD--VNARSWGSSHHHHH 114
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 70.4 bits (173), Expect = 5e-16
Identities = 23/137 (16%), Positives = 42/137 (30%), Gaps = 18/137 (13%)
Query: 3 GADLNVLDKEKRSP---LLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGG 59
+ + +P LL AA G + V V+ + + LH +
Sbjct: 8 AGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGA-- 65
Query: 60 HIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACI 119
+ + + + G +N D G +PLH A+ + L+ GA I
Sbjct: 66 NY-----SIVDFLI-----TAGAN--VNSPDSHGWTPLHCAASCNDTVICMALVQHGAAI 113
Query: 120 NLKNNSN-ESPLHLAAR 135
S+ +
Sbjct: 114 FATTLSDGATAFEKCDP 130
Score = 66.1 bits (162), Expect = 2e-14
Identities = 22/134 (16%), Positives = 40/134 (29%), Gaps = 14/134 (10%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNI-LHLLVLNGGGHI 61
GA++N D +PL AAS + LV++ A I ++ G+
Sbjct: 77 GANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGY- 135
Query: 62 KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINL 121
+ A ++ + + L S E L +
Sbjct: 136 ----ADCATYLADVEQS-------MGLMNSGAVYALWDYSAEFGDE-LSFREGESVTVLR 183
Query: 122 KNNSNESPLHLAAR 135
++ E+ AA
Sbjct: 184 RDGPEETDWWWAAL 197
Score = 59.6 bits (145), Expect = 6e-12
Identities = 20/136 (14%), Positives = 38/136 (27%), Gaps = 17/136 (12%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
D + ++E + L A + V L+ AN+ D + LH
Sbjct: 44 MNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCN--DT- 100
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKD-KTGCSPLHYAS--REGHIISLENLINLGACI 119
+ + G + G + REG+ L ++ +
Sbjct: 101 ----VICMALV-----QHGAA--IFATTLSDGATAFEKCDPYREGYADCATYLADVEQSM 149
Query: 120 NLKNNSNESPLHLAAR 135
L N+ L +
Sbjct: 150 GLMNSGAVYALWDYSA 165
Score = 56.1 bits (136), Expect = 9e-11
Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 17/107 (15%)
Query: 32 LVRNKANILLKDINRRNILHLL---VLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNE 88
++R + R N L LL L G + EV + E ++
Sbjct: 4 VLRKAGSPRKARRARLNPLVLLLDAALTG--EL-----EVVQQAVKEM-ND------PSQ 49
Query: 89 KDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
++ G + LH A + ++ LI GA +N ++ +PLH AA
Sbjct: 50 PNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAAS 96
Score = 29.9 bits (68), Expect = 0.17
Identities = 6/55 (10%), Positives = 16/55 (29%), Gaps = 1/55 (1%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNG 57
+ +++ L ++ G + +L +D L+G
Sbjct: 146 EQSMGLMNSGAVYALWDYSAEFG-DELSFREGESVTVLRRDGPEETDWWWAALHG 199
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 67.8 bits (167), Expect = 8e-16
Identities = 36/133 (27%), Positives = 56/133 (42%), Gaps = 21/133 (15%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
G+DL LL AA G V L+ N A++ KD L+L +G H+
Sbjct: 11 GSDLG-------KKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHG--HL- 60
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
E+ V L G +N D G +PLH A+ GH+ E L+ GA +N +
Sbjct: 61 ----EIVEVLL-----KNGAD--VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQ 109
Query: 123 NNSNESPLHLAAR 135
+ ++ ++
Sbjct: 110 DKFGKTAFDISIG 122
Score = 52.4 bits (127), Expect = 8e-10
Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 14/111 (12%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD+N D+ +PL LA + G + V L++N A++ D LHL G H+
Sbjct: 37 GADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIG--HL- 93
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLI 113
E+A V L G +N +DK G + + G+ E L
Sbjct: 94 ----EIAEVLL-----KHGAD--VNAQDKFGKTAFDISIGNGNEDLAEILQ 133
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 67.5 bits (166), Expect = 2e-15
Identities = 32/134 (23%), Positives = 54/134 (40%), Gaps = 18/134 (13%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
A + + L AA+RG + V L+ AN + R + ++++ G
Sbjct: 4 AAGSS--MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM---GSA- 57
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGC-SPLHYASREGHIISLENLINLGACINL 121
VA + L G A N D P+H A+REG + +L L GA +++
Sbjct: 58 ----RVAELLLLHG-AE------PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDV 106
Query: 122 KNNSNESPLHLAAR 135
++ P+ LA
Sbjct: 107 RDAWGRLPVDLAEE 120
Score = 63.3 bits (155), Expect = 6e-14
Identities = 24/134 (17%), Positives = 38/134 (28%), Gaps = 21/134 (15%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNI-LHLLVLNGGGHI 61
GA+ N + R P+ + G + L+ + A D +H G +
Sbjct: 35 GANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREG--FL 91
Query: 62 KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINL 121
+ V G A L+ +D G P+ A GH L
Sbjct: 92 -----DTLVVLHRAG-AR------LDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRG 139
Query: 122 KNNSNESPLHLAAR 135
N + A
Sbjct: 140 SN-----HARIDAA 148
Score = 43.6 bits (104), Expect = 2e-06
Identities = 22/104 (21%), Positives = 33/104 (31%), Gaps = 20/104 (19%)
Query: 3 GADLNVLDKEKR-SPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHI 61
GA+ N D P+ AA G T++ L R A + ++D R + L G H
Sbjct: 67 GAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELG--H- 123
Query: 62 KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGH 105
+VA G + + EG
Sbjct: 124 ----RDVARYLRAAA------------GGTRGSNHARIDAAEGP 151
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 68.4 bits (168), Expect = 3e-15
Identities = 20/133 (15%), Positives = 39/133 (29%), Gaps = 13/133 (9%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
D ++ + E + L A G + V LV+ N+ D + LH ++
Sbjct: 60 VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCN--NV- 116
Query: 63 EFAEEVAAVFLGEGEASQGIQ-NLLNEKDKTGCSPLHYASREGHIISLENLINLGACINL 121
+V + G + D + EG+ + L + + +
Sbjct: 117 ----QVCKFLV-----ESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGI 167
Query: 122 KNNSNESPLHLAA 134
N L
Sbjct: 168 MNKGVIYALWDYE 180
Score = 63.4 bits (155), Expect = 2e-13
Identities = 20/126 (15%), Positives = 40/126 (31%), Gaps = 15/126 (11%)
Query: 10 DKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVA 69
+ + L KT + + + +L L G ++
Sbjct: 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNP-LPLALLLDSSLEG--EF-----DLV 53
Query: 70 AVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESP 129
+ + + + G + LH A GH ++ L+ G +N ++ +P
Sbjct: 54 QRII-----YEVDD--PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTP 106
Query: 130 LHLAAR 135
LH AA
Sbjct: 107 LHCAAS 112
Score = 51.1 bits (123), Expect = 8e-09
Identities = 21/135 (15%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDIN-RRNILHLLVLNGGGHI 61
G ++N D + +PL AAS + LV + A + + + G+
Sbjct: 93 GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYT 152
Query: 62 KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINL 121
+ + G E + +K L + E + G C+ +
Sbjct: 153 -----QCSQFLYGVQEK-------MGIMNKGVIYALWDYEPQND---DELPMKEGDCMTI 197
Query: 122 --KNNSNESPLHLAA 134
+ + +E A
Sbjct: 198 IHREDEDEIEWWWAR 212
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping,
inhibition, prote binding, actin capping, actin-binding,
cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A
2kxp_C 2myo_A
Length = 123
Score = 64.3 bits (158), Expect = 1e-14
Identities = 26/127 (20%), Positives = 41/127 (32%), Gaps = 14/127 (11%)
Query: 9 LDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEV 68
L + A G V V ++ R LH G + E+
Sbjct: 3 LGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCG--QL-----EI 55
Query: 69 AAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNES 128
L +G A +N DK +PL A EGH+ ++ L++ GA +K +
Sbjct: 56 LEFLLLKG-AD------INAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLT 108
Query: 129 PLHLAAR 135
Sbjct: 109 AFEATDN 115
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 66.4 bits (162), Expect = 2e-14
Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 14/133 (10%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
+ D++ R+ L A S G + V L++ + KD + LH+ G
Sbjct: 30 KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGX---- 85
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
+E+ L +G +N ++ GC+PLHYA+ + L+ GA + K
Sbjct: 86 ---DEIVKALLVKGAH-------VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK 135
Query: 123 NNSNESPLHLAAR 135
++ + + +H AA
Sbjct: 136 DHYDATAMHRAAA 148
Score = 66.4 bits (162), Expect = 2e-14
Identities = 33/133 (24%), Positives = 55/133 (41%), Gaps = 14/133 (10%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
G +N D SPL +AAS G + V L+ A++ + N LH
Sbjct: 63 GVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKN----- 117
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
E+A + L G + KD + +H A+ +G++ + L+ A N++
Sbjct: 118 --RHEIAVMLLEGGAN-------PDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQ 168
Query: 123 NNSNESPLHLAAR 135
+ +PLHLA
Sbjct: 169 DTEGNTPLHLACD 181
Score = 59.5 bits (144), Expect = 6e-12
Identities = 32/121 (26%), Positives = 49/121 (40%), Gaps = 15/121 (12%)
Query: 16 PLLLAASRGGWK-TVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLG 74
+ A G ++ +K+ D + R LH G H E+ L
Sbjct: 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAG--HT-----EIVEFLL- 60
Query: 75 EGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAA 134
G+ +N+KD G SPLH A+ G ++ L+ GA +N N + +PLH AA
Sbjct: 61 ----QLGVP--VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAA 114
Query: 135 R 135
Sbjct: 115 S 115
Score = 59.1 bits (143), Expect = 1e-11
Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 14/94 (14%)
Query: 42 KDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYAS 101
++ I +L +E+ L + D+ + LH+A
Sbjct: 3 GCVSNIMICNLAYSGKL-------DELKERIL-----ADKSL--ATRTDQDSRTALHWAC 48
Query: 102 REGHIISLENLINLGACINLKNNSNESPLHLAAR 135
GH +E L+ LG +N K+++ SPLH+AA
Sbjct: 49 SAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAAS 82
Score = 47.6 bits (113), Expect = 1e-07
Identities = 24/119 (20%), Positives = 45/119 (37%), Gaps = 16/119 (13%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GA+ + D + + AA++G K V L+ KA+ ++D LHL
Sbjct: 129 GANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEE----- 183
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINL 121
E A + +G + + ++K +PL A +I + G ++
Sbjct: 184 --RVEEAKFLVTQGAS-------IYIENKEEKTPLQVAKGGLGLILK--RLAEGEEASM 231
Score = 46.0 bits (109), Expect = 4e-07
Identities = 6/48 (12%), Positives = 14/48 (29%)
Query: 88 EKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
E + + A E ++ + + + + LH A
Sbjct: 2 EGCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACS 49
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6,
ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 64.9 bits (159), Expect = 5e-14
Identities = 23/151 (15%), Positives = 53/151 (35%), Gaps = 32/151 (21%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNI-----LHLLVLNG 57
G +++ + L +AA + + L+ ++ + + LH+ V+N
Sbjct: 27 GCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQ 86
Query: 58 GGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDK-------------TGCSPLHYASREG 104
++ + L ++G ++ + G PL +A+ G
Sbjct: 87 --NV-----NLVRALL-----ARGAS--VSARATGSVFHYRPHNLIYYGEHPLSFAACVG 132
Query: 105 HIISLENLINLGACINLKNNSNESPLHLAAR 135
+ LI GA I +++ + LH+
Sbjct: 133 SEEIVRLLIEHGADIRAQDSLGNTVLHILIL 163
Score = 61.1 bits (149), Expect = 1e-12
Identities = 26/138 (18%), Positives = 43/138 (31%), Gaps = 29/138 (21%)
Query: 15 SPLLLAASRGGWKTVLT-LVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFL 73
SPLLLAA + + L + + LH+ L E A V +
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYD-------NLEAAMVLM 57
Query: 74 GEGEASQGI---QNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSN---- 126
+ + G + LH A ++ + L+ GA ++ + +
Sbjct: 58 -----EAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHY 112
Query: 127 ---------ESPLHLAAR 135
E PL AA
Sbjct: 113 RPHNLIYYGEHPLSFAAC 130
Score = 61.1 bits (149), Expect = 2e-12
Identities = 29/135 (21%), Positives = 54/135 (40%), Gaps = 17/135 (12%)
Query: 3 GADLNVLDKEK-------------RSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNI 49
GA ++ PL AA G + V L+ + A+I +D +
Sbjct: 98 GASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTV 157
Query: 50 LHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISL 109
LH+L+L K FA ++ + L +++L + G +P A EG+I+
Sbjct: 158 LHILILQPN---KTFACQMYNLLLSYD-GGDHLKSLELVPNNQGLTPFKLAGVEGNIVMF 213
Query: 110 ENLINLGACINLKNN 124
++L+ I ++
Sbjct: 214 QHLMQKRKHIAAAHH 228
Score = 44.9 bits (107), Expect = 1e-06
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 93 GCSPLHYASREGHIISL-ENLINLGACINLKNNSNESPLHLAAR 135
SPL A++E + +L + L G ++ + E+ LH+AA
Sbjct: 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAAL 46
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 64.8 bits (158), Expect = 9e-14
Identities = 27/151 (17%), Positives = 46/151 (30%), Gaps = 18/151 (11%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGG--- 59
A + S L +A + + V LV N A++ L+ R H G
Sbjct: 80 NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELP 139
Query: 60 -HI--KEFAEEVAAVFL--GEGEASQGIQN----------LLNEKDKTGCSPLHYASREG 104
+ +V L AS + ++ + S L +G
Sbjct: 140 LSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDG 199
Query: 105 HIISLENLINLGACINLKNNSNESPLHLAAR 135
+ L + N+ +PL LAA+
Sbjct: 200 LLQMGARLCPTVQLEEISNHQGLTPLKLAAK 230
Score = 57.1 bits (138), Expect = 5e-11
Identities = 24/130 (18%), Positives = 43/130 (33%), Gaps = 5/130 (3%)
Query: 2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRN---KANILLKDINRRNILHLLVLNGG 58
PL LAA W V L+ N A++ D +LH LV+
Sbjct: 125 FQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIAD 184
Query: 59 GHIKEFAEEVAAVFLGEGEASQGIQN--LLNEKDKTGCSPLHYASREGHIISLENLINLG 116
+ A + ++ L + G +PL A++EG I +++
Sbjct: 185 NSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQRE 244
Query: 117 ACINLKNNSN 126
++ +
Sbjct: 245 FSGAAAHHHH 254
Score = 56.3 bits (136), Expect = 1e-10
Identities = 26/143 (18%), Positives = 46/143 (32%), Gaps = 21/143 (14%)
Query: 14 RSPLLLAASRGGWKTVLTLV--------RNKANILLKDINRRNILHLLVLNGGGHIKEFA 65
R L SRG + + L+ + + + L VLN +
Sbjct: 3 RDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACI 62
Query: 66 EEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNS 125
+ + G + ++ G S LH A + + ++ L+ GA ++L+
Sbjct: 63 MPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACG 122
Query: 126 N-------------ESPLHLAAR 135
E PL LAA
Sbjct: 123 RFFQKHQGTCFYFGELPLSLAAC 145
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 64.2 bits (157), Expect = 1e-13
Identities = 25/133 (18%), Positives = 43/133 (32%), Gaps = 18/133 (13%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDIN-RRNILHLLVLNGGGHI 61
D++ +D+ R+ LL A G K V L A++ +D+ LH+
Sbjct: 67 DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV--R- 123
Query: 62 KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINL 121
EV + G + +D+ G + L A N + G I L
Sbjct: 124 ----PEVVEALV-----ELGAD--IEVEDERGLTALELAREILKTTPKGNPMQFGRRIGL 172
Query: 122 KNNSNESPLHLAA 134
+ +
Sbjct: 173 EKV---INVLEGQ 182
Score = 58.4 bits (142), Expect = 2e-11
Identities = 29/142 (20%), Positives = 43/142 (30%), Gaps = 13/142 (9%)
Query: 3 GADLNVLDKE-KRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHI 61
GADL+ D + L +AA + V LV A+I ++D L L
Sbjct: 100 GADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTP 159
Query: 62 KEF---------AEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENL 112
K E+V V G+ + + EK G + +
Sbjct: 160 KGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEI-VEKRGKGKDVEYLVRWKDGGDCEWVK 218
Query: 113 INLGACINLKNNSNESPLHLAA 134
A K+ E L A
Sbjct: 219 GVHVAEDVAKD--YEDGLEYAV 238
Score = 58.0 bits (141), Expect = 2e-11
Identities = 28/134 (20%), Positives = 51/134 (38%), Gaps = 19/134 (14%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
AD+ E +P AA + + + L+ ++ D N R L + G
Sbjct: 38 AADVV---SEYETPWWTAARKADEQALSQLL-EDRDVDAVDENGRTALLFVAGLG--S-- 89
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKD-KTGCSPLHYASREGHIISLENLINLGACINL 121
++ + G L+ +D + G + LH A+ +E L+ LGA I +
Sbjct: 90 ---DKCVRLLA-----EAGAD--LDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEV 139
Query: 122 KNNSNESPLHLAAR 135
++ + L LA
Sbjct: 140 EDERGLTALELARE 153
Score = 52.2 bits (126), Expect = 3e-09
Identities = 17/130 (13%), Positives = 39/130 (30%), Gaps = 19/130 (14%)
Query: 7 NVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAE 66
+ E L+ G + + A++ E
Sbjct: 9 SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARK--AD-----E 58
Query: 67 EVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKN-NS 125
+ + L + ++ D+ G + L + + G + L GA ++ ++
Sbjct: 59 QALSQLL------EDRD--VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG 110
Query: 126 NESPLHLAAR 135
+ LH+AA
Sbjct: 111 GLTALHMAAG 120
Score = 43.4 bits (103), Expect = 4e-06
Identities = 20/126 (15%), Positives = 34/126 (26%), Gaps = 38/126 (30%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKAN----------------------IL 40
GAD+ V D+ + L LA ++ I+
Sbjct: 134 GADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIV 193
Query: 41 LKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYA 100
K +++ +L+ GG + ++ KD L YA
Sbjct: 194 EKRGKGKDVEYLVRWKDGGDCEWVK------------GVHVAED--VAKDYE--DGLEYA 237
Query: 101 SREGHI 106
E I
Sbjct: 238 VAESVI 243
Score = 30.3 bits (69), Expect = 0.15
Identities = 5/42 (11%), Positives = 12/42 (28%)
Query: 2 TGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKD 43
++ + + L + G + A + KD
Sbjct: 188 EVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKD 229
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 63.3 bits (155), Expect = 1e-13
Identities = 25/122 (20%), Positives = 42/122 (34%), Gaps = 15/122 (12%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDIN-RRNILHLLVLNGGGHI 61
D++ +D+ R+ LL A G K V L A++ +D+ LH+
Sbjct: 66 DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV--R- 122
Query: 62 KEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINL 121
EV + G + +D+ G + L A N + G I L
Sbjct: 123 ----PEVVEALV-----ELGAD--IEVEDERGLTALELAREILKTTPKGNPMQFGRRIGL 171
Query: 122 KN 123
+
Sbjct: 172 EK 173
Score = 61.0 bits (149), Expect = 7e-13
Identities = 28/134 (20%), Positives = 52/134 (38%), Gaps = 19/134 (14%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
AD+ E +P AA + + + L+ + ++ D N R L + G
Sbjct: 37 AADVV---SEYETPWWTAARKADEQALSQLLED-RDVDAVDENGRTALLFVAGLG--S-- 88
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKD-KTGCSPLHYASREGHIISLENLINLGACINL 121
++ + G L+ +D + G + LH A+ +E L+ LGA I +
Sbjct: 89 ---DKCVRLLA-----EAGAD--LDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEV 138
Query: 122 KNNSNESPLHLAAR 135
++ + L LA
Sbjct: 139 EDERGLTALELARE 152
Score = 54.4 bits (132), Expect = 3e-10
Identities = 17/134 (12%), Positives = 41/134 (30%), Gaps = 19/134 (14%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
+ E L+ G + + A+++ +
Sbjct: 4 KIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEY---ETPWWTAARK--AD-- 56
Query: 63 EFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLK 122
E+ + L + ++ D+ G + L + + G + L GA ++ +
Sbjct: 57 ---EQALSQLL------EDRD--VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHR 105
Query: 123 N-NSNESPLHLAAR 135
+ + LH+AA
Sbjct: 106 DMRGGLTALHMAAG 119
Score = 35.5 bits (83), Expect = 0.002
Identities = 10/44 (22%), Positives = 17/44 (38%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINR 46
GAD+ V D+ + L LA ++ I L+ +
Sbjct: 133 GADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVIN 176
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 58.5 bits (143), Expect = 1e-12
Identities = 24/49 (48%), Positives = 34/49 (69%)
Query: 87 NEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
N KDK G +PLH A+R GH+ ++ L+ GA +N K+ + +PLHLAAR
Sbjct: 29 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR 77
Score = 50.4 bits (122), Expect = 1e-09
Identities = 20/43 (46%), Positives = 30/43 (69%)
Query: 93 GCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
G +PLH A+R GH+ ++ L+ GA +N K+ + +PLHLAAR
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR 44
Score = 47.0 bits (113), Expect = 3e-08
Identities = 40/104 (38%), Positives = 54/104 (51%), Gaps = 14/104 (13%)
Query: 14 RSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFL 73
R+PL LAA G + V L+ A++ KD N R LHL NG H+ EV + L
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG--HL-----EVVKLLL 55
Query: 74 GEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGA 117
G A +N KDK G +PLH A+R GH+ ++ L+ GA
Sbjct: 56 EAG-AD------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 25.8 bits (58), Expect = 2.2
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKA 37
GAD+N DK R+PL LAA G + V L+ A
Sbjct: 58 GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 60.2 bits (146), Expect = 5e-12
Identities = 26/160 (16%), Positives = 49/160 (30%), Gaps = 32/160 (20%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTV-------LTLVRNKANILLKDINR-RNILHLLV 54
A R + A ++ + + + + KD + L +
Sbjct: 3 SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAM 62
Query: 55 LNGG-GHIKEFAEEVAAVFLGEGEASQGIQNLLN----EKDKTGCSPLHYASREGHIISL 109
LN G + A+ L + ++ +N + G + LH A ++ +
Sbjct: 63 LNLHNGQ-----NDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLV 117
Query: 110 ENLINLGACINLKNNSN--------------ESPLHLAAR 135
L+ GA + N + E PL LAA
Sbjct: 118 TLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAAC 157
Score = 58.6 bits (142), Expect = 2e-11
Identities = 26/140 (18%), Positives = 41/140 (29%), Gaps = 12/140 (8%)
Query: 1 MTGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRN---KANILLKDINRRNILHLLVLNG 57
PL LAA V L++N A+I +D +LH LV
Sbjct: 136 FKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVA 195
Query: 58 GGHIKEFAEEVAAVFLGEGEASQGIQN--LLNEKDKTGCSPLHYASREGHIISLENLINL 115
+ + ++ L ++ G +PL A+ G I L ++
Sbjct: 196 DNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQR 255
Query: 116 GACINLKNNSNESPLHLAAR 135
H AA
Sbjct: 256 EI-------HEPECRHAAAH 268
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 59.4 bits (144), Expect = 8e-12
Identities = 26/144 (18%), Positives = 46/144 (31%), Gaps = 22/144 (15%)
Query: 14 RSPLLLAASRGGWKTVLTLV----RNKANILLKDINRRN----ILHLLVLNGGGHIKEFA 65
R L SRG + L+ +K + ++ + L +LN +
Sbjct: 6 RPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTI 65
Query: 66 EEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNS 125
+ + G + I + + G + LH A +E L+ GA ++ +
Sbjct: 66 PILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARG 125
Query: 126 N--------------ESPLHLAAR 135
E PL LAA
Sbjct: 126 RFFQPKDEGGYFYFGELPLSLAAC 149
Score = 58.3 bits (141), Expect = 2e-11
Identities = 27/125 (21%), Positives = 43/125 (34%), Gaps = 5/125 (4%)
Query: 1 MTGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRN---KANILLKDINRRNILHLLVLNG 57
D PL LAA V L N +A++ +D +LH LV
Sbjct: 128 FQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIA 187
Query: 58 GGH--IKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINL 115
+F ++ + L + NL + G SPL A++ G I +++I
Sbjct: 188 DNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRR 247
Query: 116 GACIN 120
Sbjct: 248 EIADA 252
Score = 46.7 bits (111), Expect = 3e-07
Identities = 25/162 (15%), Positives = 42/162 (25%), Gaps = 41/162 (25%)
Query: 4 ADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNI-------------- 49
+ + ++ L +A R V LV A++ + R
Sbjct: 84 SPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELP 143
Query: 50 LHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGH---- 105
L L + G + +D G + LH
Sbjct: 144 LSLAACTN-------QPHIVHYLTENGHKQADL----RRQDSRGNTVLHALVAIADNTRE 192
Query: 106 -----IISLENLINLGACIN-------LKNNSNESPLHLAAR 135
+ L+ A + L NN SPL +AA+
Sbjct: 193 NTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAK 234
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 51.4 bits (124), Expect = 1e-09
Identities = 20/116 (17%), Positives = 44/116 (37%), Gaps = 17/116 (14%)
Query: 20 AASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEAS 79
+S LV +++ + L G ++ + + +
Sbjct: 1 GSSHHHHHHSSGLVPRGSHM---GSDLGKKLLEAARAG--Q-----DDEVRILM-----A 45
Query: 80 QGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
G + KDK G +PLH A+R GH+ ++ L+ GA + ++ ++ ++
Sbjct: 46 NGAD--VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISID 99
Score = 39.1 bits (92), Expect = 4e-05
Identities = 18/64 (28%), Positives = 30/64 (46%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GAD+ DK +PL LAA G + V L+ A++ +D + + + NG +
Sbjct: 47 GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLA 106
Query: 63 EFAE 66
E +
Sbjct: 107 EILQ 110
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 47.3 bits (112), Expect = 2e-07
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 86 LNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
L+++ G + LHY + L+ L+ A I + N S E+PL +A R
Sbjct: 198 LDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKR 247
Score = 37.7 bits (87), Expect = 5e-04
Identities = 10/61 (16%), Positives = 23/61 (37%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
+L+ + + L + + L+R KA+I + + + L + H +
Sbjct: 195 SGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCE 254
Query: 63 E 63
E
Sbjct: 255 E 255
Score = 33.4 bits (76), Expect = 0.014
Identities = 7/46 (15%), Positives = 16/46 (34%), Gaps = 3/46 (6%)
Query: 93 GCSPLHYASREG---HIISLENLINLGACINLKNNSNESPLHLAAR 135
+ LH A R + ++ L+ ++ + + LH
Sbjct: 169 DETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCL 214
Score = 31.9 bits (72), Expect = 0.045
Identities = 25/122 (20%), Positives = 36/122 (29%), Gaps = 25/122 (20%)
Query: 14 RSPLLLAASRG---GWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAA 70
+ L LA V LV+N N+ + LH L E
Sbjct: 170 ETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTD-------NAECLK 222
Query: 71 VFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPL 130
+ L AS I +++G +PL A R H E L+
Sbjct: 223 LLLRGK-ASIEIA------NESGETPLDIAKRLKH-EHCEELLTQALS-------GRFNS 267
Query: 131 HL 132
H+
Sbjct: 268 HV 269
Score = 26.5 bits (58), Expect = 3.5
Identities = 5/36 (13%), Positives = 13/36 (36%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKAN 38
A + + ++ +PL +A L + +
Sbjct: 228 KASIEIANESGETPLDIAKRLKHEHCEELLTQALSG 263
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 45.7 bits (108), Expect = 8e-07
Identities = 18/134 (13%), Positives = 31/134 (23%), Gaps = 13/134 (9%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNI--LHLLVLNGGGH 60
+ V+ E LAA G + L ++ I N L NG H
Sbjct: 118 DEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENG--H 175
Query: 61 IKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLENLINLGACIN 120
+ V + + + A GH + L++ +
Sbjct: 176 L-----HVLNRLCELAPTEATA----MIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA 226
Query: 121 LKNNSNESPLHLAA 134
Sbjct: 227 YAEIHEFEYGEKYV 240
Score = 44.2 bits (104), Expect = 3e-06
Identities = 19/145 (13%), Positives = 35/145 (24%), Gaps = 14/145 (9%)
Query: 3 GADLNV--LDKEKRSPLLLAASRGG-WKTVLTLVRNKANILLKDINRRNILHLLVLNGGG 59
+ E AA G + L+ + +I+ V
Sbjct: 186 APTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVN--PF 243
Query: 60 HIKEFAEEVAAVFLGEGEASQGIQNLLN-EKDKTGCSPLHYASREGHIISLENLINL--- 115
+ + G+ +L+ + G L R + L+++ L
Sbjct: 244 IARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSI 303
Query: 116 -----GACINLKNNSNESPLHLAAR 135
A L LA R
Sbjct: 304 PGIKALAPTATIPGDANELLRLALR 328
Score = 43.4 bits (102), Expect = 6e-06
Identities = 17/138 (12%), Positives = 50/138 (36%), Gaps = 4/138 (2%)
Query: 1 MTGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGH 60
M ++ ++ + P L W+ + + + L ++ + +H+ L G +
Sbjct: 1 MCNLTIHNIENYENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIF-LPGTKN 59
Query: 61 IKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHIISLE---NLINLGA 117
+++ + + + ++ + + ++K A+ G +L+ L+
Sbjct: 60 MEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDE 119
Query: 118 CINLKNNSNESPLHLAAR 135
+ + N LAA
Sbjct: 120 IVKVIQAENYQAFRLAAE 137
Score = 41.9 bits (98), Expect = 2e-05
Identities = 10/52 (19%), Positives = 14/52 (26%), Gaps = 2/52 (3%)
Query: 86 LNEKDKTGCSPLHYASREGHIISLENLINLGACINLKN--NSNESPLHLAAR 135
+ A+ GH+ L L L + N LAA
Sbjct: 121 VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAE 172
Score = 39.2 bits (91), Expect = 2e-04
Identities = 7/49 (14%), Positives = 17/49 (34%), Gaps = 3/49 (6%)
Query: 87 NEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
L A R G+ + L+++ + + L +N ++
Sbjct: 313 ATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKANN---YYINET 358
Score = 28.8 bits (64), Expect = 0.50
Identities = 10/65 (15%), Positives = 20/65 (30%), Gaps = 3/65 (4%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
A + + L LA G L+ + + + N ++ G ++
Sbjct: 309 LAPTATIPGDANELLRLALRLGNQGACALLLSIPSV---LALTKANNYYINETGGRLDLR 365
Query: 63 EFAEE 67
A E
Sbjct: 366 AVALE 370
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 44.6 bits (105), Expect = 2e-06
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 86 LNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
L+ K G + LHYA+ L+ L+ A + N + E+ L +A +
Sbjct: 219 LDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARK 268
Score = 36.5 bits (84), Expect = 0.001
Identities = 9/61 (14%), Positives = 20/61 (32%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
G L+ + + L AA + L++ +A + + L + +
Sbjct: 216 GGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECE 275
Query: 63 E 63
E
Sbjct: 276 E 276
Score = 34.2 bits (78), Expect = 0.008
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 93 GCSPLHYASREGHIISL---ENLINLGACINLKNNSNESPLHLAAR 135
LH A + + SL + +I G ++ K + LH AA
Sbjct: 190 EELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAAL 235
Score = 30.7 bits (69), Expect = 0.098
Identities = 17/114 (14%), Positives = 33/114 (28%), Gaps = 23/114 (20%)
Query: 2 TGADLN------VLDKEKRSPLLLAASRGGWKTVLT---LVRNKANILLKDINRRNILHL 52
G D + L LA ++ +++N ++ K + LH
Sbjct: 173 NGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHY 232
Query: 53 LVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLLNEKDKTGCSPLHYASREGHI 106
L + + L A G ++ G + L A ++ H
Sbjct: 233 AALYN-------QPDCLKLLLKGR-ALVGT------VNEAGETALDIARKKHHK 272
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 42.5 bits (99), Expect = 1e-05
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 86 LNEKDKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
+N+ D G PLH+A+ GH + GA + +++ PL +A
Sbjct: 261 VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAME 310
Score = 37.1 bits (85), Expect = 7e-04
Identities = 12/46 (26%), Positives = 23/46 (50%)
Query: 90 DKTGCSPLHYASREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
+ +PL A+ +++ E L+ GA +N +++ PLH A
Sbjct: 232 GQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATI 277
Score = 33.6 bits (76), Expect = 0.014
Identities = 14/61 (22%), Positives = 24/61 (39%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
GA++N D R PL A G ++ A++ +D R+ L + + I
Sbjct: 258 GANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIV 317
Query: 63 E 63
Sbjct: 318 T 318
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 38.0 bits (88), Expect = 4e-04
Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 15/95 (15%)
Query: 43 DINRRNILHLLVLNGGGHIKEFAEEVAAVFLGEGEASQGIQNL--LNEKDKTGCSPLHYA 100
+LHL V + F+ IQN L+ K G + LHYA
Sbjct: 168 QAPEELVLHLAVKVANQASLPLVD-----FI--------IQNGGHLDAKAADGNTALHYA 214
Query: 101 SREGHIISLENLINLGACINLKNNSNESPLHLAAR 135
+ L+ L+ A + N + E+ L +A +
Sbjct: 215 ALYNQPDCLKLLLKGRALVGTVNEAGETALDIARK 249
Score = 33.7 bits (77), Expect = 0.012
Identities = 10/64 (15%), Positives = 21/64 (32%)
Query: 3 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 62
G L+ + + L AA + L++ +A + + L + +
Sbjct: 197 GGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECE 256
Query: 63 EFAE 66
E E
Sbjct: 257 ELLE 260
Score = 30.6 bits (69), Expect = 0.14
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Query: 87 NEKDKTGCSPLHYASREGHIISL---ENLINLGACINLKNNSNESPLHLAAR 135
+ LH A + + SL + +I G ++ K + LH AA
Sbjct: 165 PDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAAL 216
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.6 bits (71), Expect = 0.065
Identities = 32/169 (18%), Positives = 51/169 (30%), Gaps = 68/169 (40%)
Query: 1 MTGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGH 60
M G DL K S A++ W ++ + DI N ++L + GG
Sbjct: 1631 M-GMDL-----YKTSK----AAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEK 1680
Query: 61 IKEFAEEVAA---------------VFLGEGEASQGI-----QNLLNE------------ 88
K E +A +F E S + LL+
Sbjct: 1681 GKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLME 1740
Query: 89 -------KDKTGCSPL--HYASREGH-------------IISLENLINL 115
K K G P +A GH ++S+E+L+ +
Sbjct: 1741 KAAFEDLKSK-GLIPADATFA---GHSLGEYAALASLADVMSIESLVEV 1785
Score = 30.4 bits (68), Expect = 0.16
Identities = 21/116 (18%), Positives = 43/116 (37%), Gaps = 20/116 (17%)
Query: 19 LAASRG--GWKTVLTLV--RNKA--NILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVF 72
LA+ ++++ +V R + +D R+ ++ +N G F++E
Sbjct: 1770 LASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYV 1829
Query: 73 LGEGEASQG----IQNLLNEKDKTGCSPLHY-ASREGHIISLENLINLGACINLKN 123
+ G I N N Y A+ G + +L+ + N+ I L+
Sbjct: 1830 VERVGKRTGWLVEIVNY-N------VENQQYVAA--GDLRALDTVTNVLNFIKLQK 1876
Score = 26.6 bits (58), Expect = 3.5
Identities = 18/113 (15%), Positives = 40/113 (35%), Gaps = 38/113 (33%)
Query: 9 LDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEV 68
DK+ S L A G A + + + G G+ ++ EE+
Sbjct: 137 FDKKSNSALFRAVGEG-----------NAQL------------VAIFGGQGNTDDYFEEL 173
Query: 69 AAVF------LGE--GEASQGIQNLLNEKDKTGCSPLHYASREG-HIIS-LEN 111
++ +G+ +++ + L+ + + +G +I+ LEN
Sbjct: 174 RDLYQTYHVLVGDLIKFSAETLSELI--RTTLDAEKVFT---QGLNILEWLEN 221
>1rre_A ATP-dependent protease LA; catalytic Ser-Lys DYAD, hydrolase; HET:
MSE; 1.75A {Escherichia coli} SCOP: d.14.1.10 PDB:
1rr9_A*
Length = 200
Score = 30.6 bits (70), Expect = 0.12
Identities = 18/34 (52%), Positives = 21/34 (61%), Gaps = 6/34 (17%)
Query: 11 KEKRSPLLLAASRGGWKTVLTLVRNKANILLKDI 44
KEK LLAA RGG KTVL NK + L++I
Sbjct: 136 KEK----LLAAHRGGIKTVLIPFENKRD--LEEI 163
>1xhk_A Putative protease LA homolog; LON protease, ATP dependent,
catalytic DYAD, hydrolase; HET: MES; 1.90A
{Methanocaldococcus jannaschii} SCOP: d.14.1.10
Length = 187
Score = 30.2 bits (69), Expect = 0.13
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 13/56 (23%)
Query: 1 MTG-ADL--NVLD----KEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNI 49
+TG DL NVL EK + AA R G+K V+ N + + + I
Sbjct: 121 ITGSLDLSGNVLAIGGVNEK----IEAAKRYGFKRVIIPEANMID--VIETEGIEI 170
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase,
nucleotide-binding, Pro serine protease, stress
response; HET: ADP; 3.40A {Bacillus subtilis} PDB:
1x37_A
Length = 543
Score = 29.8 bits (68), Expect = 0.23
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 6/34 (17%)
Query: 11 KEKRSPLLLAASRGGWKTVLTLVRNKANILLKDI 44
KEK L A R G T++ N+ + ++DI
Sbjct: 479 KEK----ALGAHRAGLTTIIAPKDNEKD--IEDI 506
>1z0w_A Putative protease LA homolog type; ATP-dependent protease,
catalytic Ser-Lys DYAD, B-type LON, hydrolase; 1.20A
{Archaeoglobus fulgidus} PDB: 1z0b_A 1z0c_A 1z0e_A
1z0g_A 1z0t_A 1z0v_A
Length = 207
Score = 29.1 bits (66), Expect = 0.36
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 11 KEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNI 49
+K + AA + G K V+ N ++LL + I
Sbjct: 136 TQK----IEAAIQAGLKKVIIPKDNIDDVLLDAEHEGKI 170
>2x36_A LON protease homolog, mitochondrial; hydrolase, catalytic DYAD,
transit peptide; 2.00A {Homo sapiens}
Length = 207
Score = 27.5 bits (62), Expect = 1.2
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 6/34 (17%)
Query: 11 KEKRSPLLLAASRGGWKTVLTLVRNKANILLKDI 44
KEK +AA R G ++ NK + D+
Sbjct: 144 KEK----TIAAKRAGVTCIVLPAENKKD--FYDL 171
>1muw_A Xylose isomerase; atomic resolution, disorder; 0.86A {Streptomyces
olivochromogenes} SCOP: c.1.15.3 PDB: 1s5m_A* 1s5n_A*
2gyi_A* 1xyb_A* 1xyc_A* 1xya_A* 1xyl_A 1xym_A* 1dxi_A
3gnx_A* 1gw9_A* 1xib_A 1xic_A* 1xid_A* 1xie_A* 1xif_A*
1xig_A* 1xih_A* 1xii_A* 1xij_A ...
Length = 386
Score = 27.1 bits (59), Expect = 2.1
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 73 LGEGEASQGIQNLLNEK-DKTGCSPLHYASREGHIISLENLIN 114
L + A+ G+Q LL ++ A+R L+ L
Sbjct: 337 LAQPTAADGVQELLADRTAFEDFDVDAAAARGMAFERLDQLAM 379
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase,
multienzyme complex, oxidoreductase; HET: TDP; 2.0A
{Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB:
3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Length = 368
Score = 26.5 bits (59), Expect = 3.0
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 66 EEVAAVFLGEGEASQG 81
+ VA + G+G SQG
Sbjct: 164 KAVAITYTGDGGTSQG 179
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase,
multi-enzyme complex, acylation, oxidative
decarboxylation, maple syrup urine disease; HET: TDP;
1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A*
2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A*
1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A*
1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Length = 400
Score = 26.5 bits (59), Expect = 3.2
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 66 EEVAAVFLGEGEASQG 81
V + GEG AS+G
Sbjct: 184 NRVVICYFGEGAASEG 199
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2)
tetramer, structural genomics; HET: TDP; 1.90A {Thermus
thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A*
1umb_A*
Length = 367
Score = 26.4 bits (59), Expect = 3.2
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 66 EEVAAVFLGEGEASQG 81
+VA G+G S+G
Sbjct: 166 GQVAVCTFGDGATSEG 181
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP
cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas
putida} SCOP: c.36.1.11 PDB: 2bp7_A
Length = 407
Score = 25.8 bits (57), Expect = 5.4
Identities = 3/16 (18%), Positives = 11/16 (68%)
Query: 66 EEVAAVFLGEGEASQG 81
++A+ ++G+G ++
Sbjct: 203 TKIASAWIGDGATAES 218
>1sqw_A Saccharomyces cerevisiae NIP7P homolog; PUA, unknown function;
1.90A {Homo sapiens} SCOP: b.122.1.1 d.17.6.3 PDB:
1t5y_A
Length = 188
Score = 25.7 bits (56), Expect = 5.7
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 9/62 (14%)
Query: 82 IQNLLNEKDKTGCSPLH-----YAS----REGHIISLENLINLGACINLKNNSNESPLHL 132
+Q L++ D T C LH Y S + IS + L++LG C +++ LH+
Sbjct: 24 LQLLVDRPDGTYCFRLHNDRVYYVSEKIMKLAANISGDKLVSLGTCFGKFTKTHKFRLHV 83
Query: 133 AA 134
A
Sbjct: 84 TA 85
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding,
nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A
{Thermococcus onnurineus}
Length = 604
Score = 25.4 bits (56), Expect = 7.1
Identities = 7/33 (21%), Positives = 12/33 (36%), Gaps = 4/33 (12%)
Query: 11 KEKRSPLLLAASRGGWKTVLTLVRNKANILLKD 43
+ AA G K V+ N+ ++ L
Sbjct: 527 TPA----IEAAIEAGIKMVIIPKSNEKDVFLSK 555
>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative
decarboxylase, rossmann fold, MAla dehydrogenase; HET:
NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB:
1llq_A*
Length = 605
Score = 25.5 bits (56), Expect = 8.1
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 54 VLNGGGHIKEFAEEVAAVFLGEGEASQGIQNLL 86
+L K+ + +F G G AS GI ++
Sbjct: 307 LLTCTRVTKKLVSQEKYLFFGAGAASTGIAEMI 339
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.135 0.383
Gapped
Lambda K H
0.267 0.0902 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,902,780
Number of extensions: 105906
Number of successful extensions: 1090
Number of sequences better than 10.0: 1
Number of HSP's gapped: 556
Number of HSP's successfully gapped: 303
Length of query: 135
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 51
Effective length of database: 4,356,429
Effective search space: 222177879
Effective search space used: 222177879
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (23.5 bits)