Query psy8768
Match_columns 268
No_of_seqs 113 out of 157
Neff 4.1
Searched_HMMs 46136
Date Fri Aug 16 18:44:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8768.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8768hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3012|consensus 100.0 3E-109 6E-114 742.8 22.6 257 1-267 1-258 (259)
2 PF05216 UNC-50: UNC-50 family 100.0 6E-108 1E-112 736.5 22.7 227 38-265 1-231 (231)
3 PF04893 Yip1: Yip1 domain; I 87.2 6.7 0.00015 31.7 9.2 92 132-239 74-165 (172)
4 PF06161 DUF975: Protein of un 79.8 43 0.00094 29.7 12.2 53 157-214 78-130 (243)
5 PF06738 DUF1212: Protein of u 69.3 66 0.0014 27.5 10.1 68 33-121 63-130 (193)
6 PF03907 Spo7: Spo7-like prote 63.3 17 0.00037 33.4 5.5 72 68-143 2-80 (207)
7 PF06930 DUF1282: Protein of u 62.1 36 0.00077 29.0 7.0 32 205-236 127-159 (170)
8 PF06181 DUF989: Protein of un 58.6 27 0.00059 33.8 6.2 53 83-150 142-194 (300)
9 PF12433 PV_NSP1: Parvovirus n 38.6 9.5 0.00021 30.2 -0.2 13 76-88 3-15 (80)
10 COG1055 ArsB Na+/H+ antiporter 33.1 96 0.0021 31.1 5.7 124 22-163 149-281 (424)
11 cd00284 Cytochrome_b_N Cytochr 30.9 1.1E+02 0.0025 27.4 5.4 64 158-227 63-129 (200)
12 KOG3114|consensus 29.2 36 0.00078 32.8 2.0 68 154-229 141-208 (290)
13 PF13974 YebO: YebO-like prote 27.0 56 0.0012 26.0 2.4 20 131-150 3-22 (80)
14 COG3610 Uncharacterized conser 25.7 2.7E+02 0.0059 24.3 6.6 54 90-143 2-63 (156)
15 PF04093 MreD: rod shape-deter 24.8 3.3E+02 0.0072 22.2 6.8 21 132-152 139-159 (160)
16 PF12270 Cyt_c_ox_IV: Cytochro 24.1 4.2E+02 0.0092 22.9 7.4 53 95-153 9-66 (137)
17 KOG4005|consensus 23.8 54 0.0012 31.3 2.0 48 3-50 29-77 (292)
18 PF15086 UPF0542: Uncharacteri 23.4 67 0.0014 25.3 2.2 8 85-92 13-20 (74)
19 PF04156 IncA: IncA protein; 23.3 3.5E+02 0.0075 23.1 6.8 28 94-121 11-38 (191)
20 TIGR02808 short_TIGR02808 cons 20.8 34 0.00073 24.2 0.1 11 218-228 10-20 (42)
21 PF13787 HXXEE: Protein of unk 20.7 4.2E+02 0.0091 20.8 7.7 50 54-110 12-64 (116)
22 PF07787 DUF1625: Protein of u 20.1 1.9E+02 0.0041 26.3 4.8 51 67-118 166-216 (248)
No 1
>KOG3012|consensus
Probab=100.00 E-value=2.9e-109 Score=742.77 Aligned_cols=257 Identities=51% Similarity=0.960 Sum_probs=246.7
Q ss_pred CCCCCCCCcccCCCCCCCCCCCCCCCCccccccchhhhhhHHHHHhhcCCCCccHHHHHHHHHHhccchhhhhhhhhhhh
Q psy8768 1 MSRASSSRSLYSPPLRKDSTSSFLPPPVTHKTCMSAAVKRYRYLRRLFKFEQMDFEFALWQMTYLFISPQKVYKNFNYRK 80 (268)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~k~~~y~rRl~k~~qMDFE~A~WqM~~L~~~P~kVYR~~~YrK 80 (268)
|...+|+.|+++++++..| .++.|+||++|..+|+||++|++|||||+|.|||.|||++|||||||++|||
T Consensus 1 ~lPt~S~~~~~~~~~r~~s---------~~~a~~s~~~ks~~~~RRL~k~~QMDfE~A~WqMl~L~~~P~kVYr~~~YrK 71 (259)
T KOG3012|consen 1 MLPTTSVNSLVQGNGRLNS---------RDAARHSAGAKSFKYLRRLFKFRQMDFEFALWQMLYLFTSPRKVYRNFHYRK 71 (259)
T ss_pred CCCCccccccccccccccc---------cchhhhhhhhHHHHHHHHHHHHhhccHHHHHHHHHHHHhChHHHHhHhhhhh
Confidence 5667899999998876532 1223899999999999999999999999999999999999999999999999
Q ss_pred cccccccCCChhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc-CCCCCc
Q psy8768 81 EAKSQFARDDPAFLVLLAGWLCLSSLAFTLNFHLGFWSFVKFLLNFLFVDCIAVGLVIATFLWYLSNKYLIKN-QHLGQD 159 (268)
Q Consensus 81 QTKnqwARDDPAFlvL~~~~L~issi~~~l~~~~~~~~~~~~~l~~Vfvdfl~~GliiAT~~W~~~Nr~l~~~-~~~~~~ 159 (268)
|||||||||||||+|++++++++||++||+++++|++|++++++|||++||+++|++|||++|+++||+++|+ ++.||+
T Consensus 72 QTKnQwARDDPaFlVl~s~~l~vssi~~a~~~~ls~~g~v~~~~~vvfvdf~~vG~iiAT~~wfi~Nryl~k~~~s~d~~ 151 (259)
T KOG3012|consen 72 QTKNQWARDDPAFLVLLSLLLVVSSIGWAYVLDLSFIGFVKFLVWVVFVDFIIVGVIIATLFWFISNRYLRKRKSSRDYD 151 (259)
T ss_pred hhhhhhhccCchHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999986 889999
Q ss_pred eeEeeeehhhccchhHHHHHHHHHHHHHhHhhhcccchhHHHHHHHHHHHHhhhhheeeeccccccccccccchhhhhHH
Q psy8768 160 VEWAYCFDVHLNAFCPMLVISHIVQLLMYNIFMEHDWFLPVFLGNLLWFLSLSYYVYITFLGYNCLPILHTTQVILSPLI 239 (268)
Q Consensus 160 VEW~YaFDVHcNAFFp~~v~LyvlQ~~LlP~l~~~~~~~s~~lgNtLyliA~~yY~YITFLGY~aLPFL~~t~~~L~Pi~ 239 (268)
|||+||||||||||||++++|||+|++|+| ++..++|+|+++|||||++|+|||+|+|||||++|||||||+.+|+|++
T Consensus 152 vEW~YcFDVHcNsFfp~lvlLyvIq~fl~p-lI~~~~fIslllgNtl~lva~~yY~ylTFlGY~~LPfLknt~~~L~Pi~ 230 (259)
T KOG3012|consen 152 VEWGYCFDVHCNSFFPMLVLLYVIQLFLLP-LILTDNFISLLLGNTLWLVAAGYYVYLTFLGYNALPFLKNTVFLLYPIP 230 (259)
T ss_pred eeeeeeeeehhhhhHHHHHHHHHHHHHHHH-HHccccHHHHHHhhHHHHHHhhHhheeeeeccccchhhhcceeeeechH
Confidence 999999999999999999999999999999 8889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccchhHHHHHhhhccc
Q psy8768 240 PILIYFAISMLAGWNMSKTLLDYYHYRA 267 (268)
Q Consensus 240 ~~~l~~~~sl~~g~N~s~~~~~~Y~~r~ 267 (268)
.+.++|++++..|||.++.+++||+||+
T Consensus 231 ~~~il~~isl~~gwn~~~~l~~fY~~r~ 258 (259)
T KOG3012|consen 231 PLFILYLLSLALGWNFTKTLVNFYKYRV 258 (259)
T ss_pred HHHHHHHHHHhccccchhhHHHHHHhhc
Confidence 9999999999999999999999999997
No 2
>PF05216 UNC-50: UNC-50 family; InterPro: IPR007881 This family contains several eukaryotic transmembrane proteins which are related to the Caenorhabditis elegans protein UNC-50 Q10045 from SWISSPROT. A mammalian homologue, UNCL is a novel inner nuclear membrane protein that associates with RNA and is involved in the cell-surface expression of neuronal nicotinic receptors. UNCL plays a broader role because UNCL homologues are present in two yeast and a plant species, none of which express nicotinic receptors and it is also found in tissues that lack nicotinic receptors.
Probab=100.00 E-value=6.2e-108 Score=736.47 Aligned_cols=227 Identities=52% Similarity=1.020 Sum_probs=222.4
Q ss_pred hhhHHHHHhhcCCCCccHHHHHHHHHHhccchhhhhhhhhhhhcccccccCCChhHHHHHHHHHHHHHHHHHHHhccChH
Q psy8768 38 VKRYRYLRRLFKFEQMDFEFALWQMTYLFISPQKVYKNFNYRKEAKSQFARDDPAFLVLLAGWLCLSSLAFTLNFHLGFW 117 (268)
Q Consensus 38 ~k~~~y~rRl~k~~qMDFE~A~WqM~~L~~~P~kVYR~~~YrKQTKnqwARDDPAFlvL~~~~L~issi~~~l~~~~~~~ 117 (268)
+|+|+|+||++|++|||||+|+|||.+||++|||||||++||||||||||||||||+||+++++++||++||++|++|++
T Consensus 1 ~~~~~~~rRl~k~~qMDfE~A~WqM~~L~~~P~kVyr~~~yrKqTKnqwaRDDPaFlvL~~~~l~issi~~~l~~~~s~~ 80 (231)
T PF05216_consen 1 SKLPKYLRRLFKFRQMDFEFALWQMFYLCISPRKVYRNFYYRKQTKNQWARDDPAFLVLLSFFLVISSIAWGLAYSLSFW 80 (231)
T ss_pred CChHHHHHHhcCchhccHHHHHHHHHHHHhCHHHHHHHhhhcccCCccccCCCccHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc----ccCCCCCceeEeeeehhhccchhHHHHHHHHHHHHHhHhhhc
Q psy8768 118 SFVKFLLNFLFVDCIAVGLVIATFLWYLSNKYLI----KNQHLGQDVEWAYCFDVHLNAFCPMLVISHIVQLLMYNIFME 193 (268)
Q Consensus 118 ~~~~~~l~~Vfvdfl~~GliiAT~~W~~~Nr~l~----~~~~~~~~VEW~YaFDVHcNAFFp~~v~LyvlQ~~LlP~l~~ 193 (268)
++++++++||++||+++|++|||++|+++||+++ ++|++||+|||+||||||||||||+|++|||+|++|+| ++.
T Consensus 81 ~~~~~~l~~v~vdfl~~G~~iAT~~w~~~Nr~l~~~~~~~~~~~~~VEW~Y~FDVHcNaFfp~~~~Lyv~Q~~LlP-~l~ 159 (231)
T PF05216_consen 81 GILKLILWMVFVDFLLVGLIIATIFWFVANRFLRPSSSHSHSVEQDVEWGYCFDVHCNAFFPLFVLLYVLQFFLLP-LLL 159 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCcCCceEEEEeeecchhhHHHHHHHHHHHHHHHHH-HHh
Confidence 9999999999999999999999999999999998 46889999999999999999999999999999999999 555
Q ss_pred ccchhHHHHHHHHHHHHhhhhheeeeccccccccccccchhhhhHHHHHHHHHHHHHhccchhHHHHHhhhc
Q psy8768 194 HDWFLPVFLGNLLWFLSLSYYVYITFLGYNCLPILHTTQVILSPLIPILIYFAISMLAGWNMSKTLLDYYHY 265 (268)
Q Consensus 194 ~~~~~s~~lgNtLyliA~~yY~YITFLGY~aLPFL~~t~~~L~Pi~~~~l~~~~sl~~g~N~s~~~~~~Y~~ 265 (268)
+|+|+|+++|||||++|++||+||||||||+||||+|||++|+|+++++++|++++++|||+|++++++|+|
T Consensus 160 ~~~~~~~~~gNtLy~va~~yY~YiTFLGY~~LPFL~~t~~~L~Pi~~~~~~~~~sl~~g~N~s~~~~~~Y~~ 231 (231)
T PF05216_consen 160 KPSFLSLLLGNTLYLVAIGYYFYITFLGYSALPFLKNTEVFLYPILLLAVLYILSLLFGFNLSKHLLSFYFY 231 (231)
T ss_pred ccchHHHHHhHHHHHHHHHHHHHHHHHhhccCchhhcchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999986
No 3
>PF04893 Yip1: Yip1 domain; InterPro: IPR006977 This entry contains proteins belonging to the Yip1 family and represents the Yip1 domain. The Yip1 integral membrane domain contains four transmembrane alpha helices. The domain is characterised by the motifs DLYGP and GY. The Yip1 protein is a golgi protein involved in vesicular transport that interacts with GTPases [].; GO: 0016020 membrane
Probab=87.19 E-value=6.7 Score=31.69 Aligned_cols=92 Identities=18% Similarity=0.289 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHhhhhhcccCCCCCceeEeeeehhhccchhHHHHHHHHHHHHHhHhhhcccchhHHHHHHHHHHHHh
Q psy8768 132 IAVGLVIATFLWYLSNKYLIKNQHLGQDVEWAYCFDVHLNAFCPMLVISHIVQLLMYNIFMEHDWFLPVFLGNLLWFLSL 211 (268)
Q Consensus 132 l~~GliiAT~~W~~~Nr~l~~~~~~~~~VEW~YaFDVHcNAFFp~~v~LyvlQ~~LlP~l~~~~~~~s~~lgNtLyliA~ 211 (268)
++..++.|.+.|.+ .|.+. .+.++.=+|.+=+-|..|..+ ..++..++.. .... +....-.++.
T Consensus 74 ~i~~~i~~~~~~~~-~~~~g------g~~~~~~~~~~~~ya~~P~~~-~~~~~~~~~~-~~~~-------~~~~~~~l~~ 137 (172)
T PF04893_consen 74 LIGWFILALILHLI-AKLFG------GKGSFKETFSVVGYALIPLLL-GSLISIILSL-FFGP-------LSLLVIILFS 137 (172)
T ss_pred HHHHHHHHHHHHHH-HHHhC------CCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HHHH-------HHHHHHHHHH
Confidence 35555556666664 45552 223344477777888888753 3333333322 1111 3334445666
Q ss_pred hhhheeeeccccccccccccchhhhhHH
Q psy8768 212 SYYVYITFLGYNCLPILHTTQVILSPLI 239 (268)
Q Consensus 212 ~yY~YITFLGY~aLPFL~~t~~~L~Pi~ 239 (268)
.+..++...|..+.-=+++.+-.+..+.
T Consensus 138 iw~~~l~~~gl~~~~~~~~~ka~~~~~~ 165 (172)
T PF04893_consen 138 IWSAYLLVIGLREVHRLSRGKAFLIVII 165 (172)
T ss_pred HHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 6677777788777766666665554443
No 4
>PF06161 DUF975: Protein of unknown function (DUF975); InterPro: IPR010380 This is a family of uncharacterised bacterial proteins.
Probab=79.79 E-value=43 Score=29.67 Aligned_cols=53 Identities=13% Similarity=0.251 Sum_probs=29.4
Q ss_pred CCceeEeeeehhhccchhHHHHHHHHHHHHHhHhhhcccchhHHHHHHHHHHHHhhhh
Q psy8768 157 GQDVEWAYCFDVHLNAFCPMLVISHIVQLLMYNIFMEHDWFLPVFLGNLLWFLSLSYY 214 (268)
Q Consensus 157 ~~~VEW~YaFDVHcNAFFp~~v~LyvlQ~~LlP~l~~~~~~~s~~lgNtLyliA~~yY 214 (268)
++++|.+..|+.=-+..+.-.+.+.+++-++.= + |.+...+|+.+...+....
T Consensus 78 ~~~~~~~d~f~~F~~~~f~k~~~~~ll~~l~~~-L----w~ll~~i~~~i~~~~~~~~ 130 (243)
T PF06161_consen 78 KEEPSFSDLFYGFKKKRFGKSFLLYLLISLFIF-L----WSLLFIIGFFIFFISFFIF 130 (243)
T ss_pred CCCCCHHHHHHHHccccHHHHHHHHHHHHHHHH-H----HHHHHHHHHHHHHHHHHHH
Confidence 577888877777644444444555655555433 1 3344456666555554443
No 5
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=69.28 E-value=66 Score=27.54 Aligned_cols=68 Identities=24% Similarity=0.308 Sum_probs=47.5
Q ss_pred cchhhhhhHHHHHhhcCCCCccHHHHHHHHHHhccchhhhhhhhhhhhcccccccCCChhHHHHHHHHHHHHHHHHHHHh
Q psy8768 33 CMSAAVKRYRYLRRLFKFEQMDFEFALWQMTYLFISPQKVYKNFNYRKEAKSQFARDDPAFLVLLAGWLCLSSLAFTLNF 112 (268)
Q Consensus 33 ~~sa~~k~~~y~rRl~k~~qMDFE~A~WqM~~L~~~P~kVYR~~~YrKQTKnqwARDDPAFlvL~~~~L~issi~~~l~~ 112 (268)
.+..-+++.+..||+.+ .++|.|.|..++=.+--.|++ |. | . +..+.-.+++.+++..+
T Consensus 63 nl~~l~~v~~l~~~~~~-~~~~~~ea~~~L~~I~~~~~~-y~----------------~-~--~~~l~~~l~~~~fa~lf 121 (193)
T PF06738_consen 63 NLDKLAAVNRLSRRIVA-GQLSLEEAIERLDEIDREPPR-YP----------------P-W--LVILAAGLASAAFALLF 121 (193)
T ss_pred CHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHhhCCCC-CC----------------H-H--HHHHHHHHHHHHHHHHH
Confidence 46666778888888777 899999998888666555421 11 1 1 24555667888999999
Q ss_pred ccChHHHHH
Q psy8768 113 HLGFWSFVK 121 (268)
Q Consensus 113 ~~~~~~~~~ 121 (268)
+.++.+.+.
T Consensus 122 gg~~~~~~~ 130 (193)
T PF06738_consen 122 GGSWIDMIV 130 (193)
T ss_pred CCCHHHHHH
Confidence 998876544
No 6
>PF03907 Spo7: Spo7-like protein; InterPro: IPR005605 Saccharomyces cerevisiae (Baker's yeast) Spo7 P18410 from SWISSPROT is an integral nuclear/ER membrane protein of unknown function, required for normal nuclear envelope morphology and sporulation [].
Probab=63.34 E-value=17 Score=33.41 Aligned_cols=72 Identities=25% Similarity=0.437 Sum_probs=39.4
Q ss_pred chhhhhhhh-----hhhhcccccccCCChhHHHHHHHHHHHHHHHHHHHhccChHH--HHHHHHHHHHHHHHHHHHHHHH
Q psy8768 68 SPQKVYKNF-----NYRKEAKSQFARDDPAFLVLLAGWLCLSSLAFTLNFHLGFWS--FVKFLLNFLFVDCIAVGLVIAT 140 (268)
Q Consensus 68 ~P~kVYR~~-----~YrKQTKnqwARDDPAFlvL~~~~L~issi~~~l~~~~~~~~--~~~~~l~~Vfvdfl~~GliiAT 140 (268)
+|.++|||- .-|.|-.+|=+|.----+.|..+++.++.++|.+.+.++--+ ....+.. =++++|++-+.
T Consensus 2 s~~~iyrNLLIlEesLR~q~~~lr~rrrkyt~FL~~L~~~i~~~~y~lf~~~~~~~~g~~~~~~~----~~ll~~vvTlv 77 (207)
T PF03907_consen 2 SPSKIYRNLLILEESLRQQYLQLRARRRKYTFFLSLLCLWIAFFFYALFFRPREDGTGLVRYFLK----FCLLFGVVTLV 77 (207)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhhhHHHHHHHH----HHHHHHHHHHH
Confidence 467777763 223333333333333334446666777999999988877554 3333332 24555655555
Q ss_pred HHH
Q psy8768 141 FLW 143 (268)
Q Consensus 141 ~~W 143 (268)
++|
T Consensus 78 Lf~ 80 (207)
T PF03907_consen 78 LFW 80 (207)
T ss_pred Hhh
Confidence 555
No 7
>PF06930 DUF1282: Protein of unknown function (DUF1282); InterPro: IPR009698 This entry represents several hypothetical proteins of around 200 residues in length. The function of is unknown although a number of the members are thought to be putative membrane proteins.
Probab=62.13 E-value=36 Score=29.04 Aligned_cols=32 Identities=25% Similarity=0.498 Sum_probs=19.7
Q ss_pred HHHHHHhhhhheeeeccccccccc-cccchhhh
Q psy8768 205 LLWFLSLSYYVYITFLGYNCLPIL-HTTQVILS 236 (268)
Q Consensus 205 tLyliA~~yY~YITFLGY~aLPFL-~~t~~~L~ 236 (268)
..-.++..|+.|+.++|=...=-+ ++.+-+++
T Consensus 127 ~~~~~~~~~~~~Lly~Gv~~~~~i~~~~~~~~~ 159 (170)
T PF06930_consen 127 LVGLIALIYSVYLLYLGVPIFMNISEKERAIII 159 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcCcccchhhh
Confidence 445567778888887776665555 33444443
No 8
>PF06181 DUF989: Protein of unknown function (DUF989); InterPro: IPR010389 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=58.65 E-value=27 Score=33.77 Aligned_cols=53 Identities=23% Similarity=0.285 Sum_probs=41.7
Q ss_pred cccccCCChhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy8768 83 KSQFARDDPAFLVLLAGWLCLSSLAFTLNFHLGFWSFVKFLLNFLFVDCIAVGLVIATFLWYLSNKYL 150 (268)
Q Consensus 83 KnqwARDDPAFlvL~~~~L~issi~~~l~~~~~~~~~~~~~l~~Vfvdfl~~GliiAT~~W~~~Nr~l 150 (268)
|..-.++|+.+.+++.+++++.+-+++-.|+.... ++.+|..++|++. .|=++
T Consensus 142 rsplg~~~~~l~~~~~v~~~~~a~~~~q~FSgRaa-------------~i~vGa~lgTiM~--~NV~f 194 (300)
T PF06181_consen 142 RSPLGKNDTLLGVVLFVLLVVAAWGLTQVFSGRAA-------------FIHVGAWLGTIMA--ANVFF 194 (300)
T ss_pred hccccCCCchHHHHHHHHHHHHHHHHHHHhcchHH-------------HHHHHHHHHHHHH--HhHhe
Confidence 34456689999999988888888888877776554 7999999999986 36665
No 9
>PF12433 PV_NSP1: Parvovirus non-structural protein 1 ; InterPro: IPR021076 Parvoviruses are some of the smallest viruses containing linear, non-segmented single-stranded DNA genomes, with an average genome size of 5000 nucleotides. Parvoviruses have been described that infect a wide range of invertebrates and vertebrates and are well known for causing enteric disease in mammals. Genomes contains two large ORFs: NS1 and VP1; other ORFs are found in some sub-types and different gene products can arise from splice variants and the use of different start codons []. This entry represents a domain of the parvovirus non-capsid protein 1. It is found immediately N-terminal to the helicase domain and its function is unknown. Parvoviral NS1 regulates host gene expression through histone acetylation [].
Probab=38.60 E-value=9.5 Score=30.20 Aligned_cols=13 Identities=15% Similarity=0.470 Sum_probs=10.4
Q ss_pred hhhhhcccccccC
Q psy8768 76 FNYRKEAKSQFAR 88 (268)
Q Consensus 76 ~~YrKQTKnqwAR 88 (268)
.|+|||||.++..
T Consensus 3 kY~hKQTKqdYnK 15 (80)
T PF12433_consen 3 KYFHKQTKQDYNK 15 (80)
T ss_pred ccccchhhhhhcc
Confidence 3789999998764
No 10
>COG1055 ArsB Na+/H+ antiporter NhaD and related arsenite permeases [Inorganic ion transport and metabolism]
Probab=33.08 E-value=96 Score=31.11 Aligned_cols=124 Identities=25% Similarity=0.256 Sum_probs=72.9
Q ss_pred CCCCCCccccc-cch---hhhhhHHHHHhhcCCCCccHHHHHHHHHHhccchhhhhhhhhhhhccccc-ccCCChhHHHH
Q psy8768 22 SFLPPPVTHKT-CMS---AAVKRYRYLRRLFKFEQMDFEFALWQMTYLFISPQKVYKNFNYRKEAKSQ-FARDDPAFLVL 96 (268)
Q Consensus 22 ~~~~~~~~~~~-~~s---a~~k~~~y~rRl~k~~qMDFE~A~WqM~~L~~~P~kVYR~~~YrKQTKnq-wARDDPAFlvL 96 (268)
+.++.|..+.+ -+. ++-...+|..+++.+.=+..= +.--+.++... +|+-+..+=++|-|+. =+=.|+..+.+
T Consensus 149 gg~~t~iGdp~niii~~~~gisF~~f~~~m~~p~l~~li-~~~~vl~~~~~-~~~~~~~~~~~~~~~~~~ai~~~~l~~~ 226 (424)
T COG1055 149 GGLATPVGDPPNIIIASAAGISFNDFLANMFPPSLISLI-ATLVVLYLLFR-RKVIPERYDDLLLLDPREAIRDRALFKL 226 (424)
T ss_pred cccccccCChHHHHHHHhcCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-hhhccccchhhcccChhcccccHHHHHH
Confidence 44555555544 222 234466777777666555522 22223333333 5555555556665543 34457778777
Q ss_pred HHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCC----CCCceeEe
Q psy8768 97 LAGWLCLSSLAFTLNFHLGFWSFVKFLLNFLFVDCIAVGLVIATFLWYLSNKYLIKNQH----LGQDVEWA 163 (268)
Q Consensus 97 ~~~~L~issi~~~l~~~~~~~~~~~~~l~~Vfvdfl~~GliiAT~~W~~~Nr~l~~~~~----~~~~VEW~ 163 (268)
....+.+.-++|.+.- .+.+.-..++++-|++.|.+++ ++++. .-.++||.
T Consensus 227 ~~~vl~~vli~f~~~~-------------~~~i~~~~val~~a~ill~~~~---~~~~~~~~~il~~v~W~ 281 (424)
T COG1055 227 SLVVLALVLIAFLLLP-------------FLGIPVSLVALVGAAILLLLAR---LSPRESVNKILRGVEWS 281 (424)
T ss_pred HHHHHHHHHHHHHhhc-------------ccCCCHHHHHHHHHHHHHHHhc---cCcchhHHHhhhcCChH
Confidence 7777777777766433 2234457788999999999988 33333 56789996
No 11
>cd00284 Cytochrome_b_N Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Probab=30.90 E-value=1.1e+02 Score=27.38 Aligned_cols=64 Identities=27% Similarity=0.517 Sum_probs=43.0
Q ss_pred CceeEeee-ehhhccc--hhHHHHHHHHHHHHHhHhhhcccchhHHHHHHHHHHHHhhhhheeeecccccccc
Q psy8768 158 QDVEWAYC-FDVHLNA--FCPMLVISHIVQLLMYNIFMEHDWFLPVFLGNLLWFLSLSYYVYITFLGYNCLPI 227 (268)
Q Consensus 158 ~~VEW~Ya-FDVHcNA--FFp~~v~LyvlQ~~LlP~l~~~~~~~s~~lgNtLyliA~~yY~YITFLGY~aLPF 227 (268)
+||..|-. -.+|.|+ ++-+.+.+|..+-++.- --.++.-..-..|-.++++.++ ..|.|| .||.
T Consensus 63 ~ev~~G~liR~~H~~gas~~~~~~~lH~~r~~~~g-sY~~pre~~W~~G~~l~~l~~~----~af~GY-~Lpw 129 (200)
T cd00284 63 RDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYG-SYKKPRELTWVIGVILLLLTMA----TAFMGY-VLPW 129 (200)
T ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchhHHHHHHHHHHHHHHHH----HHHccc-ccCc
Confidence 34554443 3578776 66677889999988886 4444555666778888777766 477888 4554
No 12
>KOG3114|consensus
Probab=29.24 E-value=36 Score=32.82 Aligned_cols=68 Identities=13% Similarity=0.196 Sum_probs=45.6
Q ss_pred CCCCCceeEeeeehhhccchhHHHHHHHHHHHHHhHhhhcccchhHHHHHHHHHHHHhhhhheeeecccccccccc
Q psy8768 154 QHLGQDVEWAYCFDVHLNAFCPMLVISHIVQLLMYNIFMEHDWFLPVFLGNLLWFLSLSYYVYITFLGYNCLPILH 229 (268)
Q Consensus 154 ~~~~~~VEW~YaFDVHcNAFFp~~v~LyvlQ~~LlP~l~~~~~~~s~~lgNtLyliA~~yY~YITFLGY~aLPFL~ 229 (268)
+..+..++|+|||+-=.-|.--++.-+-.+++.|+- ++...+ +.+-.--.+.+-++..+||+-.+|.-
T Consensus 141 ~~t~~g~~~g~~f~~v~saa~~iy~Y~~ivp~~l~~-iL~~~~-------~~~~~~~~~l~~~~~iygysl~i~ip 208 (290)
T KOG3114|consen 141 NGTLKGTAYGYDFGLVTSAATLIYGYLTIVPLALWG-ILSWNG-------YSLLLHCYVLLELVCIYGYSLFIFIP 208 (290)
T ss_pred hccccceeeecccchHHHHHHHHHHHHHHHHHHHHH-HHHhcc-------ccccccceehhhHHHHHhhHHHHHHH
Confidence 345667999999997777777777777778888877 444333 22222334445667778888777665
No 13
>PF13974 YebO: YebO-like protein
Probab=26.98 E-value=56 Score=25.98 Aligned_cols=20 Identities=15% Similarity=0.504 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q psy8768 131 CIAVGLVIATFLWYLSNKYL 150 (268)
Q Consensus 131 fl~~GliiAT~~W~~~Nr~l 150 (268)
+.+++++++-+.||+.||.=
T Consensus 3 ~~~~~~lv~livWFFVnRaS 22 (80)
T PF13974_consen 3 VSVLVLLVGLIVWFFVNRAS 22 (80)
T ss_pred ehHHHHHHHHHHHHHHHHHH
Confidence 35678889999999999986
No 14
>COG3610 Uncharacterized conserved protein [Function unknown]
Probab=25.74 E-value=2.7e+02 Score=24.34 Aligned_cols=54 Identities=17% Similarity=0.310 Sum_probs=36.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhccChHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8768 90 DPAFLVLLAGWLCLSSLAFTLNFHLGFWS--------FVKFLLNFLFVDCIAVGLVIATFLW 143 (268)
Q Consensus 90 DPAFlvL~~~~L~issi~~~l~~~~~~~~--------~~~~~l~~Vfvdfl~~GliiAT~~W 143 (268)
-+.+..+..++..++++++++++.....+ .+.-++++.+.|..+.+..+||.+=
T Consensus 2 ~~~~~~~~~~~a~i~~v~Faivfnvp~~~l~~~~~~g~~g~~v~~l~~~~~g~~~~~atfia 63 (156)
T COG3610 2 LLLMLLLDMLFAFIATVGFAIVFNVPPRALPICGFLGALGWVVYYLLGKHFGFSIVVATFIA 63 (156)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 45677788899999999999999876554 3334555566665555555555443
No 15
>PF04093 MreD: rod shape-determining protein MreD; InterPro: IPR007227 The MreD (murein formation D) protein is involved in bacterial cell shape determination. Most rod-shaped bacteria depend on MreB and RodA to achieve either a rod shape or some other non-spherical morphology such as coil or stalk formation. MreD is encoded in an operon with MreB, and often with RodA and PBP-2 as well. It is highly hydrophobic (therefore somewhat low-complexity) and highly divergent, and therefore cannot always be identified on the basis of sequence similarity.; GO: 0008360 regulation of cell shape, 0016021 integral to membrane
Probab=24.75 E-value=3.3e+02 Score=22.23 Aligned_cols=21 Identities=29% Similarity=0.284 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHhhhhhcc
Q psy8768 132 IAVGLVIATFLWYLSNKYLIK 152 (268)
Q Consensus 132 l~~GliiAT~~W~~~Nr~l~~ 152 (268)
.....+++.++|...++.++|
T Consensus 139 ~~~~~~~~~il~~~~~~l~~k 159 (160)
T PF04093_consen 139 LLLNALIAIILYPPVFKLLRK 159 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 456677788899999998865
No 16
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=24.12 E-value=4.2e+02 Score=22.95 Aligned_cols=53 Identities=13% Similarity=0.194 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHhcc-----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q psy8768 95 VLLAGWLCLSSLAFTLNFHL-----GFWSFVKFLLNFLFVDCIAVGLVIATFLWYLSNKYLIKN 153 (268)
Q Consensus 95 vL~~~~L~issi~~~l~~~~-----~~~~~~~~~l~~Vfvdfl~~GliiAT~~W~~~Nr~l~~~ 153 (268)
..++.|+.+.++.|++.-.. -..++..+.+ ..+.+++|++-+++..+|.=.+|
T Consensus 9 ~~l~~Ff~~~~~vY~~~t~~~~~~~E~~Gt~aL~l------s~~l~~mig~yl~~~~rr~~~rP 66 (137)
T PF12270_consen 9 YGLAVFFLVVAVVYGFWTKWSGDGGEWVGTVALVL------SGGLALMIGFYLRFTARRIGPRP 66 (137)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCcchHHHHHH------HHHHHHHHHHHHHHHHhhCCCCC
Confidence 45677888889999975542 3455666655 56788899999999988874443
No 17
>KOG4005|consensus
Probab=23.77 E-value=54 Score=31.28 Aligned_cols=48 Identities=17% Similarity=0.135 Sum_probs=24.9
Q ss_pred CCC-CCCcccCCCCCCCCCCCCCCCCccccccchhhhhhHHHHHhhcCC
Q psy8768 3 RAS-SSRSLYSPPLRKDSTSSFLPPPVTHKTCMSAAVKRYRYLRRLFKF 50 (268)
Q Consensus 3 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~k~~~y~rRl~k~ 50 (268)
.+| ++.+||.+++..|.++-.-..|...+.+..--+-=-|..||-+|=
T Consensus 29 g~p~g~s~~~~~~~~~~~~~~aas~~~rKr~RL~HLS~EEK~~RrKLKN 77 (292)
T KOG4005|consen 29 GSPTGSSSGYASSSNMDDDNMAASQPKRKRRRLDHLSWEEKVQRRKLKN 77 (292)
T ss_pred CCCCCCCccccCccccCCCcccccchHHHHHhhcccCHHHHHHHHHHHH
Confidence 345 777889888887663322223333222322233334556666654
No 18
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=23.44 E-value=67 Score=25.29 Aligned_cols=8 Identities=25% Similarity=0.642 Sum_probs=5.9
Q ss_pred cccCCChh
Q psy8768 85 QFARDDPA 92 (268)
Q Consensus 85 qwARDDPA 92 (268)
-|++|||-
T Consensus 13 ~~vAkdP~ 20 (74)
T PF15086_consen 13 EWVAKDPY 20 (74)
T ss_pred HHHHcChH
Confidence 47888884
No 19
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=23.29 E-value=3.5e+02 Score=23.10 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHhccChHHHHH
Q psy8768 94 LVLLAGWLCLSSLAFTLNFHLGFWSFVK 121 (268)
Q Consensus 94 lvL~~~~L~issi~~~l~~~~~~~~~~~ 121 (268)
.+++.+.+.+++++--..+..+....+.
T Consensus 11 ~iilgilli~~gI~~Lv~~~~~l~~~~s 38 (191)
T PF04156_consen 11 LIILGILLIASGIAALVLFISGLGALIS 38 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3445555666666664444444333333
No 20
>TIGR02808 short_TIGR02808 conserved hypothetical protein TIGR02808. This very small protein (about 46 amino acids) consists largely of a single predicted membrane-spanning region. It is found in Photobacterium profundum SS9 and in three species of Vibrio, always near periplasmic nitrate reductase genes, but far from the periplasmic nitrate reductase genes in Aeromonas hydrophila ATCC7966.
Probab=20.84 E-value=34 Score=24.20 Aligned_cols=11 Identities=36% Similarity=1.008 Sum_probs=9.0
Q ss_pred eeccccccccc
Q psy8768 218 TFLGYNCLPIL 228 (268)
Q Consensus 218 TFLGY~aLPFL 228 (268)
..|||+++|+.
T Consensus 10 HilGY~AmPvI 20 (42)
T TIGR02808 10 HVLGYGAMPFI 20 (42)
T ss_pred HHhcccccchH
Confidence 45899999974
No 21
>PF13787 HXXEE: Protein of unknown function with HXXEE motif
Probab=20.74 E-value=4.2e+02 Score=20.77 Aligned_cols=50 Identities=22% Similarity=0.159 Sum_probs=23.3
Q ss_pred cHHHHHHHHHHhccchhhhhhhhhhhhcccccc---cCCChhHHHHHHHHHHHHHHHHHH
Q psy8768 54 DFEFALWQMTYLFISPQKVYKNFNYRKEAKSQF---ARDDPAFLVLLAGWLCLSSLAFTL 110 (268)
Q Consensus 54 DFE~A~WqM~~L~~~P~kVYR~~~YrKQTKnqw---ARDDPAFlvL~~~~L~issi~~~l 110 (268)
|||+..+ -|+=.-|+....||.+.++ ...+.++.+.....+.+.....+.
T Consensus 12 ~~EE~~~-------~~~w~~~~~~~~~~~~~~~~~~~~~~f~~~v~~~~~~~~~~~~~~~ 64 (116)
T PF13787_consen 12 QFEEIIF-------FPRWANKNRFKLKQRPDRFPLNSTSAFAVNVAIEFILVLLAAFLAA 64 (116)
T ss_pred HHHHHHH-------HHHHHHHHHhhhhhccccccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888 2333334433344444332 333334444444444444444443
No 22
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=20.15 E-value=1.9e+02 Score=26.33 Aligned_cols=51 Identities=14% Similarity=0.234 Sum_probs=31.2
Q ss_pred cchhhhhhhhhhhhcccccccCCChhHHHHHHHHHHHHHHHHHHHhccChHH
Q psy8768 67 ISPQKVYKNFNYRKEAKSQFARDDPAFLVLLAGWLCLSSLAFTLNFHLGFWS 118 (268)
Q Consensus 67 ~~P~kVYR~~~YrKQTKnqwARDDPAFlvL~~~~L~issi~~~l~~~~~~~~ 118 (268)
.++++++++.. +.++...|.=.==+++.+..++.++.+....++-...+.+
T Consensus 166 ~s~~e~f~~~~-~~n~~~tW~lR~~G~llmf~G~~~~~~~l~~l~~~~P~lg 216 (248)
T PF07787_consen 166 VSAEEMFAKEH-SANNTLTWILRFIGWLLMFIGFFLLFSPLYTLVDWIPLLG 216 (248)
T ss_pred cCHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhceee
Confidence 35677777533 4445555655555667777777777777777655444433
Done!