Query psy8768
Match_columns 268
No_of_seqs 113 out of 157
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 18:44:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8768.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8768hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hkr_A Calcium release-activat 30.2 22 0.00076 31.6 2.0 57 191-248 111-167 (214)
2 1g1p_A Conotoxin EVIA; three d 15.9 48 0.0016 21.1 0.8 14 218-231 5-18 (33)
3 2lon_A HIG1 domain family memb 18.9 36 0.0012 26.7 0.0 67 85-153 23-92 (99)
4 3pcv_A Leukotriene C4 synthase 13.8 5.2E+02 0.018 21.0 7.8 90 44-151 46-136 (156)
5 2lom_A HIG1 domain family memb 14.7 53 0.0018 25.4 0.0 67 84-152 21-90 (93)
6 3rvy_A ION transport protein; 10.8 1.9E+02 0.0065 24.7 3.5 23 120-142 214-236 (285)
7 4b19_A PEPA1; toxin, toxin apo 10.3 1.7E+02 0.0058 18.5 2.2 17 132-148 11-27 (30)
8 2o7a_A Lysozyme; protein foldi 9.3 95 0.0033 24.8 0.9 37 38-88 54-90 (124)
9 4e97_A Lysozyme; hydrolase, al 8.1 1.5E+02 0.0052 24.5 1.7 23 52-85 146-168 (187)
10 1r8s_E ARNO; protein transport 7.6 6.4E+02 0.022 21.6 5.6 60 40-100 77-144 (203)
No 1
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=30.23 E-value=22 Score=31.60 Aligned_cols=57 Identities=25% Similarity=0.596 Sum_probs=46.8
Q ss_pred hhcccchhHHHHHHHHHHHHhhhhheeeeccccccccccccchhhhhHHHHHHHHHHH
Q psy8768 191 FMEHDWFLPVFLGNLLWFLSLSYYVYITFLGYNCLPILHTTQVILSPLIPILIYFAIS 248 (268)
Q Consensus 191 l~~~~~~~s~~lgNtLyliA~~yY~YITFLGY~aLPFL~~t~~~L~Pi~~~~l~~~~s 248 (268)
.+...|..|+.+|=.|+++-+..-++|.|+-++.-+-.. +.++|.|+.++++.|.+-
T Consensus 111 yIE~AW~fST~lGi~LFL~evall~WVKF~~~~~~aa~~-~t~vliPv~i~F~~Fa~h 167 (214)
T 4hkr_A 111 YIETAWAFSTLLGLILFLLEIAILCWVKFYDLSRRAAWS-ATVVLIPVMIIFMAFAIH 167 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHH-HHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhheEEeecCCcHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 444588899999999999999999999999998765544 358889998888877654
No 2
>1g1p_A Conotoxin EVIA; three disulfide linkages, CIS/trans isomerism of Leu12- Pro13 peptide bond, hydroxyproline; HET: HYP; NMR {Synthetic} SCOP: g.3.6.1 PDB: 1g1z_A*
Probab=15.91 E-value=48 Score=21.06 Aligned_cols=14 Identities=36% Similarity=0.617 Sum_probs=11.4
Q ss_pred eecccccccccccc
Q psy8768 218 TFLGYNCLPILHTT 231 (268)
Q Consensus 218 TFLGY~aLPFL~~t 231 (268)
-=+|+-+||.|+|-
T Consensus 5 kpygfcslpilkng 18 (33)
T 1g1p_A 5 KPYGFCSLPILKNG 18 (33)
T ss_dssp CTTSBCCCSSSSCC
T ss_pred ccccceechhhcCC
Confidence 34799999999974
No 3
>2lon_A HIG1 domain family member 1B; membrane protein, helical bundle; NMR {Homo sapiens}
Probab=18.91 E-value=36 Score=26.68 Aligned_cols=67 Identities=16% Similarity=0.288 Sum_probs=46.3
Q ss_pred cccCCChhHHHHHHHHHHHHHHHHHH---HhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q psy8768 85 QFARDDPAFLVLLAGWLCLSSLAFTL---NFHLGFWSFVKFLLNFLFVDCIAVGLVIATFLWYLSNKYLIKN 153 (268)
Q Consensus 85 qwARDDPAFlvL~~~~L~issi~~~l---~~~~~~~~~~~~~l~~Vfvdfl~~GliiAT~~W~~~Nr~l~~~ 153 (268)
+..++||-..+-+.. +.+.+++|+ .-+.+.....+++=+-|..-++.++++++.+.+-.-+.++.++
T Consensus 23 rk~ke~PlvpIg~l~--~~~vl~~Gl~~~~~rG~~~~Sqklmr~RV~AQg~tV~al~~g~~ysm~~~~~~~~ 92 (99)
T 2lon_A 23 RKTRESPLVPIGLGG--CLVVAAYRIYRLRSRGSTKMSIHLIHTRVAAQACAVGAIMLGAVYTMYSDYVKRM 92 (99)
Confidence 457889977643332 333344443 2233445578888899999999999999999998888888654
No 4
>3pcv_A Leukotriene C4 synthase; membrane protein, helix bundle, HOMO trimer, MGST, mapeg, LY; HET: GSH LMT; 1.90A {Homo sapiens} PDB: 2pno_A* 3b29_A* 2uui_A* 2uuh_A* 3hkk_A* 3leo_A*
Probab=13.79 E-value=5.2e+02 Score=21.04 Aligned_cols=90 Identities=10% Similarity=0.026 Sum_probs=52.5
Q ss_pred HHhhcCCCCccHHHHHHHHHHhccchhhhhhhhhhhhcccccccCCChhHHHHHHHHHHHHHHHHHHHhccCh-HHHHHH
Q psy8768 44 LRRLFKFEQMDFEFALWQMTYLFISPQKVYKNFNYRKEAKSQFARDDPAFLVLLAGWLCLSSLAFTLNFHLGF-WSFVKF 122 (268)
Q Consensus 44 ~rRl~k~~qMDFE~A~WqM~~L~~~P~kVYR~~~YrKQTKnqwARDDPAFlvL~~~~L~issi~~~l~~~~~~-~~~~~~ 122 (268)
+.|..|-.|=+.|..---+.-+.+. . . .+.|...-++....+++-+.|+..|..+. +.....
T Consensus 46 f~Ra~RAH~N~lE~~P~fl~ll~l~-----~-----------l-~~~~~~a~~lg~~~~~gRily~~gY~~~~~~R~~G~ 108 (156)
T 3pcv_A 46 FERVYRAQVNCSEYFPLFLATLWVA-----G-----------I-FFHEGAAALCGLVYLFARLRYFQGYARSAQLRLAPL 108 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----H-----------H-HTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGGHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH-----H-----------H-cCCHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHH
Confidence 4566666666666654443333322 0 1 11245556677777888888888886542 223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy8768 123 LLNFLFVDCIAVGLVIATFLWYLSNKYLI 151 (268)
Q Consensus 123 ~l~~Vfvdfl~~GliiAT~~W~~~Nr~l~ 151 (268)
.+ .......+.+..+..+.+.+.++|++
T Consensus 109 ~~-t~~~~~~L~~~~~~Gi~~~~~~~~~~ 136 (156)
T 3pcv_A 109 YA-SARALWLLVALAALGLLAHFLPAALR 136 (156)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22 23455666777777778888888885
No 5
>2lom_A HIG1 domain family member 1A; membrane protein, helical bundle; NMR {Homo sapiens}
Probab=14.74 E-value=53 Score=25.41 Aligned_cols=67 Identities=15% Similarity=0.152 Sum_probs=45.5
Q ss_pred ccccCCChhHHHHHHHHHHHHHHHHHH---HhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q psy8768 84 SQFARDDPAFLVLLAGWLCLSSLAFTL---NFHLGFWSFVKFLLNFLFVDCIAVGLVIATFLWYLSNKYLIK 152 (268)
Q Consensus 84 nqwARDDPAFlvL~~~~L~issi~~~l---~~~~~~~~~~~~~l~~Vfvdfl~~GliiAT~~W~~~Nr~l~~ 152 (268)
-+..++||-..+-+.. +.+.+++|+ .-+.+.....+++=+-|..-++.++++++.+.+-.-+.++.+
T Consensus 21 ~rk~ke~PlvpIg~~~--~~~vl~~Gl~~~~~rG~~~~sqklmr~RV~aQg~tV~al~~g~~ys~~~~~~~~ 90 (93)
T 2lom_A 21 IRKAKEAPFVPVGIAG--FAAIVAYGLYKLKSRGNTKMSIHLIHMRVAAQGFVVGAMTVGMGYSMYREFWAK 90 (93)
Confidence 3457889977643322 333444443 223445557888888999999999999999888877777744
No 6
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=10.76 E-value=1.9e+02 Score=24.70 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8768 120 VKFLLNFLFVDCIAVGLVIATFL 142 (268)
Q Consensus 120 ~~~~l~~Vfvdfl~~GliiAT~~ 142 (268)
..++.+.++.-++..++.+|++.
T Consensus 214 ~~f~~~~~i~~~~~lnl~~aii~ 236 (285)
T 3rvy_A 214 VFFIPFIFVVTFVMINLVVAICV 236 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555666666666554
No 7
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=10.34 E-value=1.7e+02 Score=18.49 Aligned_cols=17 Identities=35% Similarity=0.647 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHhhh
Q psy8768 132 IAVGLVIATFLWYLSNK 148 (268)
Q Consensus 132 l~~GliiAT~~W~~~Nr 148 (268)
..+|.++|-+-.++.||
T Consensus 11 visGcivalF~hWL~~r 27 (30)
T 4b19_A 11 VISGCAIAFFSYWLSRR 27 (30)
T ss_dssp THHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 57899999888888776
No 8
>2o7a_A Lysozyme; protein folding, protein stability, circular permutant, hydrolase; HET: SME; 0.84A {Enterobacteria phage T4}
Probab=9.32 E-value=95 Score=24.81 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=27.2
Q ss_pred hhhHHHHHhhcCCCCccHHHHHHHHHHhccchhhhhhhhhhhhcccccccC
Q psy8768 38 VKRYRYLRRLFKFEQMDFEFALWQMTYLFISPQKVYKNFNYRKEAKSQFAR 88 (268)
Q Consensus 38 ~k~~~y~rRl~k~~qMDFE~A~WqM~~L~~~P~kVYR~~~YrKQTKnqwAR 88 (268)
.+.++.+|++ ++=|.+.|--|| ++..+.|||+|+-.|
T Consensus 54 ~~Fstllk~l---nagD~~~Aa~el-----------~~S~Wa~Qtp~Ra~r 90 (124)
T 2o7a_A 54 AGFTNSLRML---QQKRWDEAAVNL-----------AKSRWYNQTPNRAKR 90 (124)
T ss_dssp HTCHHHHHHH---HTTCHHHHHHHH-----------TTSHHHHHSHHHHHH
T ss_pred cchhHHHHHH---HCcCHHHHHHHH-----------HhChhhhhCcHHHHH
Confidence 3445666665 456999999999 455677899998776
No 9
>4e97_A Lysozyme; hydrolase, alkylation with 2-mercaptoethanol; 1.30A {Enterobacteria phage T4} PDB: 4ekp_A 4ekq_A* 4ekr_A 4eks_A
Probab=8.10 E-value=1.5e+02 Score=24.47 Aligned_cols=23 Identities=9% Similarity=0.163 Sum_probs=17.1
Q ss_pred CccHHHHHHHHHHhccchhhhhhhhhhhhccccc
Q psy8768 52 QMDFEFALWQMTYLFISPQKVYKNFNYRKEAKSQ 85 (268)
Q Consensus 52 qMDFE~A~WqM~~L~~~P~kVYR~~~YrKQTKnq 85 (268)
+=|++.|.-||. ...+.|||+|+
T Consensus 146 ~gd~~~Aa~Em~-----------dSrW~kQt~~R 168 (187)
T 4e97_A 146 QKRWDEAAVNLA-----------KSRWYNQCPDR 168 (187)
T ss_dssp TTCHHHHHHHHT-----------TSHHHHHSHHH
T ss_pred cCCHHHHHHHHH-----------hchhhccCcHH
Confidence 459999999984 44677788775
No 10
>1r8s_E ARNO; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Homo sapiens} SCOP: a.118.3.1 PDB: 1r8m_E* 1r8q_E* 1s9d_E* 1pbv_A 1bc9_A
Probab=7.64 E-value=6.4e+02 Score=21.55 Aligned_cols=60 Identities=20% Similarity=0.314 Sum_probs=41.6
Q ss_pred hHHHHHhhcCCCCccHHHHHHHHHHhccch---hhhhh-----hhhhhhcccccccCCChhHHHHHHHH
Q psy8768 40 RYRYLRRLFKFEQMDFEFALWQMTYLFISP---QKVYK-----NFNYRKEAKSQFARDDPAFLVLLAGW 100 (268)
Q Consensus 40 ~~~y~rRl~k~~qMDFE~A~WqM~~L~~~P---~kVYR-----~~~YrKQTKnqwARDDPAFlvL~~~~ 100 (268)
+..|+ +++.|..|+++.|+=+++.-+.-| |++=| +..|+++..+-++-.|-++++..++.
T Consensus 77 l~~y~-~~fdF~~~~ld~ALR~fL~~f~LPgEaQ~IdRile~Fa~ry~~~Np~~f~s~D~~~vLaySiI 144 (203)
T 1r8s_E 77 LHAFV-DLHEFTDLNLVQALRQFLWSFRLPGKAQKIDRMMEAFAQRYCLCNPGVFQSTDTCYVLSYSVI 144 (203)
T ss_dssp HHHHH-HTCCCTTCCHHHHHHHHHHSSCCCSSHHHHHHHHHHHHHHHHHHSTTSSSCHHHHHHHHHHHH
T ss_pred HHHHH-HhcCCCCCcHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHhCCcccCCcchHHHHHHHHH
Confidence 44454 479999999999999999888888 44433 23577777777776666665443333
Done!