Query psy8768
Match_columns 268
No_of_seqs 113 out of 157
Neff 4.1
Searched_HMMs 13730
Date Fri Aug 16 18:44:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8768.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/8768hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1g1pa_ g.3.6.1 (A:) Conotoxin 16.6 21 0.0015 21.1 0.8 14 218-231 5-18 (32)
2 d1a6bb_ g.40.1.1 (B:) Zinc fin 12.5 29 0.0021 21.7 0.7 10 82-91 18-27 (40)
3 d2axtm1 f.23.35.1 (M:1-36) Pho 11.6 36 0.0026 20.8 0.9 26 223-248 4-29 (36)
4 d1fwxa1 b.6.1.4 (A:452-581) Ni 8.1 48 0.0035 24.4 0.7 7 85-91 2-8 (132)
5 d2ahma1 a.8.9.1 (A:6-78) Nonst 5.8 26 0.0019 24.6 -2.0 17 154-170 21-37 (73)
6 d1xsza1 a.118.3.1 (A:1-197) Ra 5.7 3.9E+02 0.028 20.6 5.2 54 40-94 73-134 (197)
7 d1dsva_ g.40.1.1 (A:) Nucleic 5.7 79 0.0057 18.7 0.6 8 82-89 10-17 (31)
8 d1qnia1 b.6.1.4 (A:451-581) Ni 5.5 80 0.0058 23.1 0.7 7 86-92 3-9 (131)
9 d1cl4a_ g.40.1.1 (A:) Nucleoca 5.5 82 0.006 18.7 0.6 8 82-89 10-17 (32)
10 d1kbla3 d.142.1.5 (A:2-376) Py 5.0 1.1E+02 0.0077 24.8 1.2 10 156-165 317-326 (375)
No 1
>d1g1pa_ g.3.6.1 (A:) Conotoxin {Conus ermineus, E VIa [TaxId: 55423]}
Probab=16.62 E-value=21 Score=21.06 Aligned_cols=14 Identities=36% Similarity=0.617 Sum_probs=11.4
Q ss_pred eecccccccccccc
Q psy8768 218 TFLGYNCLPILHTT 231 (268)
Q Consensus 218 TFLGY~aLPFL~~t 231 (268)
-=+|+-+||.|+|-
T Consensus 5 kpygfcslpilkng 18 (32)
T d1g1pa_ 5 KPYGFCSLPILKNG 18 (32)
T ss_dssp CTTSBCCCSSSSCC
T ss_pred ccccceechhhcCC
Confidence 34799999999974
No 2
>d1a6bb_ g.40.1.1 (B:) Zinc finger protein ncp10 {Moloney murine leukemia virus, MoMLV [TaxId: 11801]}
Probab=12.47 E-value=29 Score=21.69 Aligned_cols=10 Identities=40% Similarity=0.753 Sum_probs=8.5
Q ss_pred ccccccCCCh
Q psy8768 82 AKSQFARDDP 91 (268)
Q Consensus 82 TKnqwARDDP 91 (268)
-|.||+||=|
T Consensus 18 e~GHW~~dCP 27 (40)
T d1a6bb_ 18 EKGHWAKDCP 27 (40)
T ss_dssp CTTCCTTSCS
T ss_pred hcCchhhhCc
Confidence 5789999977
No 3
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=11.64 E-value=36 Score=20.82 Aligned_cols=26 Identities=23% Similarity=0.456 Sum_probs=19.3
Q ss_pred cccccccccchhhhhHHHHHHHHHHH
Q psy8768 223 NCLPILHTTQVILSPLIPILIYFAIS 248 (268)
Q Consensus 223 ~aLPFL~~t~~~L~Pi~~~~l~~~~s 248 (268)
|.|-|+...-++|.|...++++|+=+
T Consensus 4 N~Lg~iAt~LFilvPt~FLliLyvqT 29 (36)
T d2axtm1 4 NQLGLIATALFVLVPSVFLIILYVQT 29 (36)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhheee
Confidence 45556666677889998888888754
No 4
>d1fwxa1 b.6.1.4 (A:452-581) Nitrous oxide reductase, C-terminal domain {Paracoccus denitrificans [TaxId: 266]}
Probab=8.12 E-value=48 Score=24.36 Aligned_cols=7 Identities=43% Similarity=0.999 Sum_probs=5.8
Q ss_pred cccCCCh
Q psy8768 85 QFARDDP 91 (268)
Q Consensus 85 qwARDDP 91 (268)
-|-||||
T Consensus 2 ~~~~~dP 8 (132)
T d1fwxa1 2 VWDRNDP 8 (132)
T ss_dssp SCCTTCG
T ss_pred ccccCCC
Confidence 3889999
No 5
>d2ahma1 a.8.9.1 (A:6-78) Nonstructural protein 7, NSP7 {SARS coronavirus [TaxId: 227859]}
Probab=5.75 E-value=26 Score=24.60 Aligned_cols=17 Identities=24% Similarity=0.501 Sum_probs=13.8
Q ss_pred CCCCCceeEeeeehhhc
Q psy8768 154 QHLGQDVEWAYCFDVHL 170 (268)
Q Consensus 154 ~~~~~~VEW~YaFDVHc 170 (268)
+-..+.=||+||-|.|-
T Consensus 21 ~veaNSk~waycV~LHN 37 (73)
T d2ahma1 21 RVESSSKLWAQCVQLHN 37 (73)
T ss_dssp TCTTSHHHHHHHHHHHH
T ss_pred cHHhhhHHHHHHHHHHH
Confidence 44567789999999994
No 6
>d1xsza1 a.118.3.1 (A:1-197) RalF, N-terminal domain {Legionella pneumophila [TaxId: 446]}
Probab=5.74 E-value=3.9e+02 Score=20.59 Aligned_cols=54 Identities=17% Similarity=0.245 Sum_probs=39.4
Q ss_pred hHHHHHhhcCCCCccHHHHHHHHHHhccchhh---hhh-----hhhhhhcccccccCCChhHH
Q psy8768 40 RYRYLRRLFKFEQMDFEFALWQMTYLFISPQK---VYK-----NFNYRKEAKSQFARDDPAFL 94 (268)
Q Consensus 40 ~~~y~rRl~k~~qMDFE~A~WqM~~L~~~P~k---VYR-----~~~YrKQTKnqwARDDPAFl 94 (268)
+..|++ .+.+..|+++.|+=+++.-+.-|.. +=| +..|.+|..+.+.-.|-+++
T Consensus 73 l~~y~~-~f~f~~~~id~ALR~~l~~f~LpgE~Q~IdRile~Fa~~y~~~Np~~~~~~d~v~~ 134 (197)
T d1xsza1 73 LKAFTS-QMNFNGQSFVEGLRTFLKTFKLPGEAQKIDRLVQSFSGAYFQQNPDVVSNADAAYL 134 (197)
T ss_dssp HHHHHH-TSCCTTSCHHHHHHHHHHTSCBCSSHHHHHHHHHHHHHHHHHHCTTTSSSHHHHHH
T ss_pred HHHHHH-hCCcCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHhCcCCCCCccHHHH
Confidence 444554 8899999999999999998888854 222 33677888777776665554
No 7
>d1dsva_ g.40.1.1 (A:) Nucleic acid binding protein p14 {Mouse mammary tumor virus [TaxId: 11757]}
Probab=5.70 E-value=79 Score=18.66 Aligned_cols=8 Identities=0% Similarity=0.148 Sum_probs=6.1
Q ss_pred ccccccCC
Q psy8768 82 AKSQFARD 89 (268)
Q Consensus 82 TKnqwARD 89 (268)
-.+|||||
T Consensus 10 kG~HWa~~ 17 (31)
T d1dsva_ 10 KGYHWKSE 17 (31)
T ss_dssp SSBSCTTT
T ss_pred CcchHHHH
Confidence 45789987
No 8
>d1qnia1 b.6.1.4 (A:451-581) Nitrous oxide reductase, C-terminal domain {Pseudomonas nautica [TaxId: 2743]}
Probab=5.53 E-value=80 Score=23.14 Aligned_cols=7 Identities=43% Similarity=1.051 Sum_probs=5.2
Q ss_pred ccCCChh
Q psy8768 86 FARDDPA 92 (268)
Q Consensus 86 wARDDPA 92 (268)
|-||||=
T Consensus 3 ~~~~~p~ 9 (131)
T d1qnia1 3 YERNDPY 9 (131)
T ss_dssp CCTTCGG
T ss_pred cccCCcc
Confidence 7777775
No 9
>d1cl4a_ g.40.1.1 (A:) Nucleocapsid protein from mason-pfizer monkey virus (MPMV) {Mason-pfizer monkey virus [TaxId: 11855]}
Probab=5.47 E-value=82 Score=18.69 Aligned_cols=8 Identities=13% Similarity=0.360 Sum_probs=6.0
Q ss_pred ccccccCC
Q psy8768 82 AKSQFARD 89 (268)
Q Consensus 82 TKnqwARD 89 (268)
..++||||
T Consensus 10 kG~HWa~~ 17 (32)
T d1cl4a_ 10 RGKHWANE 17 (32)
T ss_dssp SCSSCSTT
T ss_pred CcchHHHH
Confidence 35789987
No 10
>d1kbla3 d.142.1.5 (A:2-376) Pyruvate phosphate dikinase, N-terminal domain {Clostridium symbiosum [TaxId: 1512]}
Probab=5.04 E-value=1.1e+02 Score=24.83 Aligned_cols=10 Identities=30% Similarity=0.189 Sum_probs=8.4
Q ss_pred CCCceeEeee
Q psy8768 156 LGQDVEWAYC 165 (268)
Q Consensus 156 ~~~~VEW~Ya 165 (268)
..||+||++.
T Consensus 317 ~PqDIEWAi~ 326 (375)
T d1kbla3 317 DMQDMEFTIE 326 (375)
T ss_dssp SCEEEEEEEE
T ss_pred CcceeEEEEE
Confidence 5799999885
Done!