RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy8768
         (268 letters)



>gnl|CDD|218505 pfam05216, UNC-50, UNC-50 family.  Gmh1p from S. cerevisiae is
           located in the Golgi membrane and interacts with ARF
           exchange factors.
          Length = 232

 Score =  272 bits (698), Expect = 1e-92
 Identities = 109/231 (47%), Positives = 160/231 (69%), Gaps = 5/231 (2%)

Query: 39  KRYRYLRRLFKFEQMDFEFALWQMTYLFISPQKVYKNFNYRKEAKSQFARDDPAFLVLLA 98
           +  +YLRRLFK  QMDFE ALWQM YL ++P+KVY++  YRK+ K+Q+ARDDPAFLVLL+
Sbjct: 3   RLPKYLRRLFKPRQMDFETALWQMFYLCVNPKKVYRSTYYRKQTKNQWARDDPAFLVLLS 62

Query: 99  GWLCLSSLAFTLNFHLGFWSFVKFLLNFLFVDCIAVGLVIATFLWYLSNKYLIKN----Q 154
            +L +SS+A+ L +  GF   +K +L  +FVD + VGLVIAT  W+++N+YL  +     
Sbjct: 63  VFLVISSVAWGLAYGPGFSQIIKLILYMVFVDFLLVGLVIATVFWFVANRYLRASGGHSH 122

Query: 155 HLGQDVEWAYCFDVHLNAFCPMLVISHIVQLLMYNIFMEHDWFLPVFLGNLLWFLSLSYY 214
              Q VEW Y FDVH NAF P+ V+ +++Q  +  + +  D F+ +F+GN L+ ++L YY
Sbjct: 123 ASDQRVEWGYAFDVHCNAFFPIFVLLYVLQFFLLPL-LIRDSFISLFVGNTLYLIALGYY 181

Query: 215 VYITFLGYNCLPILHTTQVILSPLIPILIYFAISMLAGWNMSKTLLDYYHY 265
            YITFLGYN LP L  TQ +L P+  + I + +S+L G+N+++ L+ +Y Y
Sbjct: 182 FYITFLGYNALPFLKNTQFLLYPIPLLFILYLLSLLFGFNVARHLVSFYFY 232


>gnl|CDD|180565 PRK06450, PRK06450, threonine synthase; Validated.
          Length = 338

 Score = 28.2 bits (63), Expect = 5.2
 Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 14/41 (34%)

Query: 180 SHIVQ--------LLMYNIFMEHDW------FLPVFLGNLL 206
           SH++Q         L Y I  + DW      F+PV  G LL
Sbjct: 169 SHVLQPQFRDGIRTLAYEIAKDLDWKIPNYVFIPVSAGTLL 209


>gnl|CDD|223935 COG1003, GcvP, Glycine cleavage system protein P
          (pyridoxal-binding), C-terminal domain [Amino acid
          transport and metabolism].
          Length = 496

 Score = 28.0 bits (63), Expect = 6.2
 Identities = 11/53 (20%), Positives = 15/53 (28%), Gaps = 6/53 (11%)

Query: 6  SSRSLYSPPLRKDSTSSFLPPPVTHKTCMSAAVKRY---RYLRRLFKFEQMDF 55
          S        L +     +LP PV  +             R+  RL    Q D 
Sbjct: 13 SRTGRTGYSLPEQVVEEYLPHPVFRRYPPLPEHSETEMVRHYTRL---SQKDL 62


>gnl|CDD|177565 PHA03239, PHA03239, envelope glycoprotein M; Provisional.
          Length = 429

 Score = 27.3 bits (60), Expect = 9.9
 Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 25/174 (14%)

Query: 108 FTLNFHLGFWSFVKFLLNFLFVDCIA---VGLVIATFLWYLS----NKYLIKNQHLGQDV 160
           F   F          LL +  +   A   VG+ IA  L+        K    N     D+
Sbjct: 153 FLGLFSAWAEHAFLILLAYKQLGIAATAFVGIFIAFLLFMGCFAGGGKIPDNNAKFELDI 212

Query: 161 EWAYCFDVH----------LNAFCPMLVISHIVQLLMYNIFMEHDWFLPVF---LGNLLW 207
           +   C D+H          LN FC +  I H++  L+  + M   + L +     G L  
Sbjct: 213 K-EVCKDLHALIGAAKAVFLNLFCALFGIDHLILCLLGALIMALHFGLDIPKATSGALSM 271

Query: 208 FLSLSYYVYITFLGYNCLPILHTTQVILSPLIPILIYFAISMLAGWNMSKTLLD 261
           F+ L     I +L    L + H   V++ P + ++I  AI+  A    +  L D
Sbjct: 272 FIVLG----IIYLMMAELTVAHYVHVLIGPHLGMIIACAIAGTAAHAYADRLYD 321


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.332    0.143    0.474 

Gapped
Lambda     K      H
   0.267   0.0718    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,992,690
Number of extensions: 1363649
Number of successful extensions: 2179
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2155
Number of HSP's successfully gapped: 139
Length of query: 268
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 173
Effective length of database: 6,723,972
Effective search space: 1163247156
Effective search space used: 1163247156
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 58 (26.1 bits)