RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy8768
         (268 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 33.3 bits (75), Expect = 0.080
 Identities = 42/337 (12%), Positives = 81/337 (24%), Gaps = 119/337 (35%)

Query: 9   SLYSPPLRKD----STSSFLPPPVTHKTC-----MSAAVKRYRYLRRLF----------- 48
           S++      +             ++ +          AV       RLF           
Sbjct: 23  SVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG---TLRLFWTLLSKQEEMV 79

Query: 49  -KF----EQMDFEFALWQMTYLFISPQKVYKNFNY------------------RKEAKSQ 85
            KF     +++++F +  +      P  + + +                    R +   +
Sbjct: 80  QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK 139

Query: 86  F----ARDDPAFLVLLAG-------WL---CLSSLAFTLNFHLG-FWSFVKFLLNFLFVD 130
                    PA  VL+ G       W+      S           FW      LN    +
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW------LNLKNCN 193

Query: 131 CIAVGLVIATFLWYLSNKYLIKN----QHLGQDVEWAY--------------CF----DV 168
                L +   L Y  +           ++   +                  C     +V
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253

Query: 169 ----HLNAF---CPMLVIS-------HIVQLLMYNIFMEHDWFLPVFLGNLLWFLSLSYY 214
                 NAF   C +L+ +        +      +I ++H          L      S  
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH------HSMTLTPDEVKSLL 307

Query: 215 VYITFLGYNCLPILHTTQVILSPLIPILIYFAISMLA 251
           +         LP    T    +P         +S++A
Sbjct: 308 LKYLDCRPQDLPREVLT---TNPR-------RLSIIA 334



 Score = 31.4 bits (70), Expect = 0.32
 Identities = 28/194 (14%), Positives = 60/194 (30%), Gaps = 47/194 (24%)

Query: 101 LCLSSLAFTLNFHLGFWSFVKFLLNFLFVDCIAVGLVIATFLWY-------------LSN 147
             L+ L       + F     F  +        + L +   +W+             L  
Sbjct: 361 SSLNVLEPAEYRKM-FDRLSVFPPS---AHIPTILLSL---IWFDVIKSDVMVVVNKLHK 413

Query: 148 KYLIKNQHLGQDVEWAYCF-DVHLNAFCPM--LVISHIVQLLMYNIFMEHDW--FLPVFL 202
             L++     Q  E       ++L     +      H   +  YNI    D    +P +L
Sbjct: 414 YSLVE----KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL 469

Query: 203 GNLLWFLSLSYYVYITFLGYNCLPILHTTQVILSPLIPI--------LIYFAISMLAGWN 254
                      Y Y + +G++   I H  ++ L  ++ +        + + + +  A  +
Sbjct: 470 DQ---------YFY-SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGS 519

Query: 255 MSKTLLDYYHYRAF 268
           +  TL     Y+ +
Sbjct: 520 ILNTLQQLKFYKPY 533



 Score = 27.5 bits (60), Expect = 6.8
 Identities = 30/193 (15%), Positives = 57/193 (29%), Gaps = 43/193 (22%)

Query: 94  LVLLAGWL-----CLSSLAFTLN-FHLG-FWSFVKFLL----NFLFVDCIAVGLVIATFL 142
             LL  +L      L     T N   L      ++  L    N+  V+C  +  +I + L
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363

Query: 143 WYLSNKYLIKNQHLGQDVEWAYCF--DVHLNAFCPMLVISHIVQLLMYN-IFMEHDWFLP 199
             L        + +   +     F    H+    P +++S    L+ ++ I  +    + 
Sbjct: 364 NVLEPAEY---RKMFDRLS---VFPPSAHI----PTILLS----LIWFDVIKSDVMVVVN 409

Query: 200 VFLGNLL---WFLSLSYYVYITFLGYNC----LPILHTTQVILSPLIPILIYFAISMLAG 252
                 L        +  +   +L           LH  + I+        Y        
Sbjct: 410 KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH--RSIVDH------YNIPKTFDS 461

Query: 253 WNMSKTLLDYYHY 265
            ++    LD Y Y
Sbjct: 462 DDLIPPYLDQYFY 474


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 30.7 bits (68), Expect = 0.31
 Identities = 7/39 (17%), Positives = 15/39 (38%), Gaps = 13/39 (33%)

Query: 1  MSRASSSRSLYSPPLRKDSTSSFLPPPVTHKTCMSAAVK 39
          + +  +S  LY+     DS      P +     + A ++
Sbjct: 22 LKKLQASLKLYAD----DSA-----PALA----IKATME 47


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 27.7 bits (61), Expect = 5.8
 Identities = 37/244 (15%), Positives = 64/244 (26%), Gaps = 92/244 (37%)

Query: 92  AFLVLLAG-W---LCLSSLAFTLNFHLGFWS---FVKFLLNFLFV-DCIAVG-------L 136
           A  +     W         A T+ F +G      +    L    + D +          L
Sbjct: 280 AVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPML 339

Query: 137 VIATFLWYLSNKYLIK-----NQHLGQDVEWAYCFDVHL---NAFCP-MLVIS-HIVQLL 186
            I+     L+ + +       N HL           V +   N      LV+S     L 
Sbjct: 340 SISN----LTQEQVQDYVNKTNSHLPAG------KQVEISLVNG--AKNLVVSGPPQSLY 387

Query: 187 MYNIFME----------------------HDWFLPVFL--------------------GN 204
             N+ +                        + FLPV                       N
Sbjct: 388 GLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNN 447

Query: 205 LLWFLS-LSYYVYITFLGYNCLPILHTTQVILSPLIPILIYFAISMLAGW----NMSKT- 258
           + +    +   VY TF G +        +V+   +   ++   I +   W        T 
Sbjct: 448 VSFNAKDIQIPVYDTFDGSD-------LRVLSGSISERIVDCIIRLPVKWETTTQFKATH 500

Query: 259 LLDY 262
           +LD+
Sbjct: 501 ILDF 504


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.332    0.143    0.474 

Gapped
Lambda     K      H
   0.267   0.0558    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,162,796
Number of extensions: 233326
Number of successful extensions: 398
Number of sequences better than 10.0: 1
Number of HSP's gapped: 398
Number of HSP's successfully gapped: 16
Length of query: 268
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 176
Effective length of database: 4,133,061
Effective search space: 727418736
Effective search space used: 727418736
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 56 (25.7 bits)