BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy877
(136 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9BX63|FANCJ_HUMAN Fanconi anemia group J protein OS=Homo sapiens GN=BRIP1 PE=1 SV=1
Length = 1249
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 73/108 (67%), Gaps = 10/108 (9%)
Query: 29 RWSSTGLMDRIREVKSVYCEPRRNDE--LENVMLGYFTAIKQAELRSSNTSEKNTGALLF 86
RW STGL + VK+V EP+ ++ + ++ Y+ AIK EK+ GALL
Sbjct: 707 RWLSTGLWHNLELVKTVIVEPQGGEKTNFDELLQVYYDAIKYK-------GEKD-GALLV 758
Query: 87 TIFRGKISEGIDFADNYARSVISVGIPFPSIQDEKVKLKRSYNDTHAQ 134
+ RGK+SEG+DF+D+ AR+VI++GIPFP+++D +V+LKR YND H++
Sbjct: 759 AVCRGKVSEGLDFSDDNARAVITIGIPFPNVKDLQVELKRQYNDHHSK 806
>sp|Q5SXJ3|FANCJ_MOUSE Fanconi anemia group J protein homolog OS=Mus musculus GN=Brip1
PE=2 SV=1
Length = 1174
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/110 (43%), Positives = 73/110 (66%), Gaps = 10/110 (9%)
Query: 29 RWSSTGLMDRIREVKSVYCEPRRND--ELENVMLGYFTAIKQAELRSSNTSEKNTGALLF 86
RW TGL + VK+V EP+ + + + ++ Y+ AIK EK+ GALL
Sbjct: 710 RWIFTGLWHSLESVKTVIAEPQGGEKTDFDELLQVYYDAIK-------FKGEKD-GALLI 761
Query: 87 TIFRGKISEGIDFADNYARSVISVGIPFPSIQDEKVKLKRSYNDTHAQKK 136
+ RGK+SEG+DF+D+ AR+VI+VGIPFP+++D +V+LKR YND H++ +
Sbjct: 762 AVCRGKVSEGLDFSDDNARAVITVGIPFPNVKDLQVELKRQYNDHHSKSR 811
>sp|Q3YK19|FANCJ_CHICK Fanconi anemia group J protein homolog OS=Gallus gallus GN=BRIP1
PE=2 SV=1
Length = 1252
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 67/106 (63%), Gaps = 10/106 (9%)
Query: 29 RWSSTGLMDRIREVKSVYCEPR--RNDELENVMLGYFTAIKQAELRSSNTSEKNTGALLF 86
RW TGL + VK+V EP+ + + ++ Y+ AIK EK+ GALL
Sbjct: 717 RWIHTGLWRNLELVKTVIAEPQGGAKSDFDELLKIYYDAIK-------FKGEKD-GALLI 768
Query: 87 TIFRGKISEGIDFADNYARSVISVGIPFPSIQDEKVKLKRSYNDTH 132
+ RGK+SEG+DF D AR+VI++GIPFP+++D +V+LKR YND H
Sbjct: 769 AVCRGKVSEGLDFCDENARAVITIGIPFPNVKDLQVELKRKYNDQH 814
>sp|Q7QEI1|RTEL1_ANOGA Regulator of telomere elongation helicase 1 homolog OS=Anopheles
gambiae GN=AGAP000634 PE=3 SV=5
Length = 991
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 66/127 (51%), Gaps = 10/127 (7%)
Query: 7 CWLIRGSTA-RIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEPRRNDELENVMLGYFTA 65
C +I G P+ N C W ++G+ +I +K ++ EPR D+ M Y+
Sbjct: 551 CPIIPGGLLIFFPSYPLLNKCSEEWQASGIWGQISRLKQIFVEPRGKDQFTTTMAEYYAQ 610
Query: 66 IKQAELRSSNTSEKNTGALLFTIFRGKISEGIDFADNYARSVISVGIPFPSIQDEKVKLK 125
++ R GA+ + RGK+SEG+DFAD R+V+ G+PFP + D +V LK
Sbjct: 611 VRDPASR---------GAIFMAVCRGKVSEGLDFADANGRAVMITGLPFPPMMDARVVLK 661
Query: 126 RSYNDTH 132
+ Y DT+
Sbjct: 662 KQYLDTN 668
>sp|Q29FS3|RTEL1_DROPS Regulator of telomere elongation helicase 1 homolog OS=Drosophila
pseudoobscura pseudoobscura GN=GA17940 PE=3 SV=2
Length = 1009
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 67/125 (53%), Gaps = 11/125 (8%)
Query: 12 GSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEPRRNDELENVMLGYFTAIKQAEL 71
G P+ N C W ++GL I K ++ EPR D+ + M ++ AI+ ++
Sbjct: 557 GLLVFFPSYPMLNKCVDAWQASGLWADISCKKPIFVEPRGKDQFTSTMEEFYQAIRDSK- 615
Query: 72 RSSNTSEKNTGALLFTIFRGKISEGIDFADNYARSVISVGIPFPSIQDEKVKLKRSYNDT 131
GA+ + RGK+SEG+DFAD R+VI G+PFP ++D KV LKR Y +T
Sbjct: 616 ----------GAVFMAVCRGKVSEGLDFADRNGRAVIITGLPFPPLKDPKVILKRRYLET 665
Query: 132 HAQKK 136
+ K+
Sbjct: 666 NRTKE 670
>sp|B4GU19|RTEL1_DROPE Regulator of telomere elongation helicase 1 homolog OS=Drosophila
persimilis GN=GL14463 PE=3 SV=1
Length = 1009
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 67/125 (53%), Gaps = 11/125 (8%)
Query: 12 GSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEPRRNDELENVMLGYFTAIKQAEL 71
G P+ N C W ++GL I K ++ EPR D+ + M ++ AI+ ++
Sbjct: 557 GLLVFFPSYPMLNKCVDAWQASGLWADISCKKPIFVEPRGKDQFTSTMEEFYQAIRDSK- 615
Query: 72 RSSNTSEKNTGALLFTIFRGKISEGIDFADNYARSVISVGIPFPSIQDEKVKLKRSYNDT 131
GA+ + RGK+SEG+DFAD R+VI G+PFP ++D KV LKR Y +T
Sbjct: 616 ----------GAVFMAVCRGKVSEGLDFADRNGRAVIITGLPFPPLKDPKVILKRRYLET 665
Query: 132 HAQKK 136
+ K+
Sbjct: 666 NRTKE 670
>sp|Q16X92|RTEL1_AEDAE Regulator of telomere elongation helicase 1 homolog OS=Aedes
aegypti GN=AAEL008960 PE=3 SV=1
Length = 1010
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 63/123 (51%), Gaps = 10/123 (8%)
Query: 7 CWLIRGST-ARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEPRRNDELENVMLGYFTA 65
C +I G P+ N C+ W TG+ +I K ++ EPR D+ N M Y+
Sbjct: 558 CPIIPGGLLVFFPSYPLLNKCQEAWQETGIWAQISRTKPIFVEPRGKDQFLNTMSEYYQK 617
Query: 66 IKQAELRSSNTSEKNTGALLFTIFRGKISEGIDFADNYARSVISVGIPFPSIQDEKVKLK 125
I + GA+ + RGK+SEG+DFAD R+VI G+PFP ++D +V LK
Sbjct: 618 INDPD---------GKGAVFMAVCRGKVSEGLDFADMNGRAVIITGLPFPPLKDARVILK 668
Query: 126 RSY 128
+ Y
Sbjct: 669 KKY 671
>sp|B4JNS2|RTEL1_DROGR Regulator of telomere elongation helicase 1 homolog OS=Drosophila
grimshawi GN=GH24089 PE=3 SV=1
Length = 986
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 64/121 (52%), Gaps = 11/121 (9%)
Query: 12 GSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEPRRNDELENVMLGYFTAIKQAEL 71
G P+ N C W ++GL I K ++ EPR D+ + M ++ AI+ ++
Sbjct: 557 GLLVFFPSYPMLNQCVDAWQASGLWADISSRKPIFLEPRGKDQFTSTMEEFYQAIRDSK- 615
Query: 72 RSSNTSEKNTGALLFTIFRGKISEGIDFADNYARSVISVGIPFPSIQDEKVKLKRSYNDT 131
GA + RGK+SEG+DFAD R+VI G+PFP ++D KV LKR Y +T
Sbjct: 616 ----------GACFMAVCRGKVSEGLDFADRNGRAVIITGLPFPPLKDPKVILKRRYLET 665
Query: 132 H 132
+
Sbjct: 666 N 666
>sp|B4L1Z2|RTEL1_DROMO Regulator of telomere elongation helicase 1 homolog OS=Drosophila
mojavensis GN=GI15901 PE=3 SV=1
Length = 1014
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 65/120 (54%), Gaps = 11/120 (9%)
Query: 17 IPNKDSANGCEIRWSSTGLMDRIREVKSVYCEPRRNDELENVMLGYFTAIKQAELRSSNT 76
P+ N C W ++GL + K ++ EPR D+ + M ++ AI+ ++
Sbjct: 562 FPSYPMLNQCVDAWQASGLWADLSSRKPIFLEPRGKDQFTSTMEEFYQAIRDSK------ 615
Query: 77 SEKNTGALLFTIFRGKISEGIDFADNYARSVISVGIPFPSIQDEKVKLKRSYNDTHAQKK 136
GA + RGK+SEG+DFAD R+VI G+PFP ++D KV LKR Y +T+ K+
Sbjct: 616 -----GACFMAVCRGKVSEGLDFADRNGRAVIITGLPFPPLKDPKVILKRRYLETNRTKE 670
>sp|B4M891|RTEL1_DROVI Regulator of telomere elongation helicase 1 homolog OS=Drosophila
virilis GN=GJ16649 PE=3 SV=1
Length = 1005
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 66/125 (52%), Gaps = 11/125 (8%)
Query: 12 GSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEPRRNDELENVMLGYFTAIKQAEL 71
G P+ N C W ++GL I K ++ EPR D+ + M ++ AI+ ++
Sbjct: 556 GLLVFFPSYPMLNQCVDAWQASGLWADISCRKPIFLEPRGKDQFTSTMEEFYQAIRDSK- 614
Query: 72 RSSNTSEKNTGALLFTIFRGKISEGIDFADNYARSVISVGIPFPSIQDEKVKLKRSYNDT 131
GA + RGK+SEG+DFAD R+VI G+PFP ++D KV LKR Y +T
Sbjct: 615 ----------GACFMAVCRGKVSEGLDFADRNGRAVIITGLPFPPLKDPKVVLKRRYLET 664
Query: 132 HAQKK 136
+ K+
Sbjct: 665 NRTKE 669
>sp|B4PZB4|RTEL1_DROYA Regulator of telomere elongation helicase 1 homolog OS=Drosophila
yakuba GN=GE16425 PE=3 SV=1
Length = 985
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 62/117 (52%), Gaps = 11/117 (9%)
Query: 12 GSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEPRRNDELENVMLGYFTAIKQAEL 71
G P+ N C W ++GL I K ++ EPR D+ + M ++ AI+ ++
Sbjct: 556 GLLVFFPSYPMLNKCVDAWQASGLWADISVKKPIFLEPRSKDQFTSTMEEFYQAIRDSK- 614
Query: 72 RSSNTSEKNTGALLFTIFRGKISEGIDFADNYARSVISVGIPFPSIQDEKVKLKRSY 128
GA+ + RGK+SEG+DFAD R+VI G+PFP ++D KV LKR Y
Sbjct: 615 ----------GAVFMAVCRGKVSEGLDFADRNGRAVIITGLPFPPLKDPKVILKRRY 661
>sp|B0W9F4|RTEL1_CULQU Regulator of telomere elongation helicase 1 homolog OS=Culex
quinquefasciatus GN=CPIJ003765 PE=3 SV=1
Length = 978
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 62/123 (50%), Gaps = 10/123 (8%)
Query: 7 CWLIRGST-ARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEPRRNDELENVMLGYFTA 65
C +I G P+ N C+ W TG+ +I K ++ EPR D+ N M Y+
Sbjct: 560 CPIIPGGLLVFFPSYPLLNKCQEAWQETGIWAQISRTKPIFVEPRGKDQFLNTMTEYYAK 619
Query: 66 IKQAELRSSNTSEKNTGALLFTIFRGKISEGIDFADNYARSVISVGIPFPSIQDEKVKLK 125
I + GA+ + RGK+SEG+DFAD R+ I G+PFP ++D +V LK
Sbjct: 620 INDPD---------GKGAVFMAVCRGKVSEGLDFADMNGRACIITGLPFPPLKDARVILK 670
Query: 126 RSY 128
+ Y
Sbjct: 671 KRY 673
>sp|Q6AXC6|DDX11_MOUSE Probable ATP-dependent RNA helicase DDX11 OS=Mus musculus GN=Ddx11
PE=2 SV=1
Length = 880
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 68/117 (58%), Gaps = 4/117 (3%)
Query: 12 GSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEPRRNDELENVMLGYFTAIKQAEL 71
G +P+ + W TGL+ R+ K ++ EP+R ++E V++ Y I +
Sbjct: 674 GVVCFLPSYEYLRQVHAHWDKTGLLTRLSVRKKIFQEPKRASQVEQVLMAYSKCI----M 729
Query: 72 RSSNTSEKNTGALLFTIFRGKISEGIDFADNYARSVISVGIPFPSIQDEKVKLKRSY 128
S++ TGALL ++ GK+SEGI+F+D+ R V+ VG+P+P+I+ +++ K +Y
Sbjct: 730 SCSHSEGHLTGALLLSVVGGKMSEGINFSDDLGRCVVMVGMPYPNIKSPELQEKMAY 786
>sp|B4I0K4|RTEL1_DROSE Regulator of telomere elongation helicase 1 homolog OS=Drosophila
sechellia GN=GM12432 PE=3 SV=1
Length = 966
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 62/117 (52%), Gaps = 11/117 (9%)
Query: 12 GSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEPRRNDELENVMLGYFTAIKQAEL 71
G P+ N C W ++GL I K ++ EPR D+ + M ++ AI+ ++
Sbjct: 537 GLLVFFPSYPMLNKCVDAWQASGLWADISCKKPIFLEPRSKDQFTSTMEEFYQAIRDSK- 595
Query: 72 RSSNTSEKNTGALLFTIFRGKISEGIDFADNYARSVISVGIPFPSIQDEKVKLKRSY 128
GA+ + RGK+SEG+DFAD R+VI G+PFP ++D KV LKR Y
Sbjct: 596 ----------GAVFMAVCRGKVSEGLDFADRNGRAVIITGLPFPPLKDPKVILKRRY 642
>sp|B3NSW1|RTEL1_DROER Regulator of telomere elongation helicase 1 homolog OS=Drosophila
erecta GN=GG18780 PE=3 SV=1
Length = 985
Score = 82.4 bits (202), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 62/117 (52%), Gaps = 11/117 (9%)
Query: 12 GSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEPRRNDELENVMLGYFTAIKQAEL 71
G P+ N C W ++GL I K ++ EPR D+ + M ++ AI+ ++
Sbjct: 556 GLLVFFPSYPMLNKCVDAWQASGLWADISCKKPIFLEPRSKDQFTSTMEEFYQAIRDSK- 614
Query: 72 RSSNTSEKNTGALLFTIFRGKISEGIDFADNYARSVISVGIPFPSIQDEKVKLKRSY 128
GA+ + RGK+SEG+DFAD R+VI G+PFP ++D KV LKR Y
Sbjct: 615 ----------GAVFMAVCRGKVSEGLDFADRNGRAVIITGLPFPPLKDPKVILKRRY 661
>sp|Q9W484|RTEL1_DROME Regulator of telomere elongation helicase 1 homolog OS=Drosophila
melanogaster GN=CG4078 PE=1 SV=1
Length = 985
Score = 82.4 bits (202), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 62/117 (52%), Gaps = 11/117 (9%)
Query: 12 GSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEPRRNDELENVMLGYFTAIKQAEL 71
G P+ N C W ++GL I K ++ EPR D+ + M ++ AI+ ++
Sbjct: 556 GLLVFFPSYPMLNKCVDAWQASGLWADISCKKPIFLEPRSKDQFTSTMEEFYQAIRDSK- 614
Query: 72 RSSNTSEKNTGALLFTIFRGKISEGIDFADNYARSVISVGIPFPSIQDEKVKLKRSY 128
GA+ + RGK+SEG+DFAD R+VI G+PFP ++D KV LKR Y
Sbjct: 615 ----------GAVFMAVCRGKVSEGLDFADRNGRAVIITGLPFPPLKDPKVILKRRY 661
>sp|B3MSG8|RTEL1_DROAN Regulator of telomere elongation helicase 1 homolog OS=Drosophila
ananassae GN=GF20802 PE=3 SV=1
Length = 994
Score = 82.4 bits (202), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 64/121 (52%), Gaps = 11/121 (9%)
Query: 12 GSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEPRRNDELENVMLGYFTAIKQAEL 71
G P+ N C W ++GL I K ++ EPR D+ + M ++ AI+ ++
Sbjct: 556 GLLVFFPSYPMLNKCVDAWQASGLWADIASKKPIFLEPRGKDQFTSTMEEFYQAIRDSK- 614
Query: 72 RSSNTSEKNTGALLFTIFRGKISEGIDFADNYARSVISVGIPFPSIQDEKVKLKRSYNDT 131
GA + RGK+SEG+DFAD R+VI G+PFP ++D KV LKR Y ++
Sbjct: 615 ----------GACFMAVCRGKVSEGLDFADRNGRAVIITGLPFPPLKDPKVILKRRYLES 664
Query: 132 H 132
+
Sbjct: 665 N 665
>sp|B4NDG5|RTEL1_DROWI Regulator of telomere elongation helicase 1 homolog OS=Drosophila
willistoni GN=GK24923 PE=3 SV=1
Length = 998
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 64/125 (51%), Gaps = 11/125 (8%)
Query: 12 GSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEPRRNDELENVMLGYFTAIKQAEL 71
G P+ N C W ++GL I K ++ EPR D+ M ++ AI+ ++
Sbjct: 562 GLLVFFPSYPMLNKCVDAWQTSGLWADIAAKKPIFLEPRGKDQFTTTMEEFYQAIRDSK- 620
Query: 72 RSSNTSEKNTGALLFTIFRGKISEGIDFADNYARSVISVGIPFPSIQDEKVKLKRSYNDT 131
GA + RGK+SEG+DFAD R+VI G+P+P ++D KV LKR Y +
Sbjct: 621 ----------GACFMAVCRGKVSEGLDFADRNGRAVIITGLPYPPLKDPKVILKRRYLEA 670
Query: 132 HAQKK 136
+ K+
Sbjct: 671 NRTKE 675
>sp|P0C928|RTEL1_DANRE Regulator of telomere elongation helicase 1 OS=Danio rerio GN=rtel1
PE=3 SV=1
Length = 1177
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 53/107 (49%), Gaps = 9/107 (8%)
Query: 30 WSSTGLMDRIREVKSVYCEPRRNDELENVMLGYFTAIKQAELRSSNTSEKNTGALLFTIF 89
W + G DRI VK ++ EPR V+ GY+ + ++G F +
Sbjct: 572 WRAKGHADRIENVKPMFVEPRGKGTFTEVIDGYYGKVDDP---------NSSGGSFFAVC 622
Query: 90 RGKISEGIDFADNYARSVISVGIPFPSIQDEKVKLKRSYNDTHAQKK 136
RGK SEG+DFAD Y R V+ G+PFP D +V LK Y D + K
Sbjct: 623 RGKASEGLDFADTYGRGVVITGLPFPPRMDPRVVLKMQYLDEMCRNK 669
>sp|Q96FC9|DDX11_HUMAN Probable ATP-dependent RNA helicase DDX11 OS=Homo sapiens GN=DDX11
PE=1 SV=1
Length = 970
Score = 76.6 bits (187), Expect = 4e-14, Method: Composition-based stats.
Identities = 39/119 (32%), Positives = 63/119 (52%), Gaps = 4/119 (3%)
Query: 12 GSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEPRRNDELENVMLGYFTAIKQAEL 71
G P+ + W GL+ R+ K ++ EP+ ++E V+L Y I+
Sbjct: 702 GVVCFFPSYEYLRQVHAHWEKGGLLGRLAARKKIFQEPKSAHQVEQVLLAYSRCIQACGQ 761
Query: 72 RSSNTSEKNTGALLFTIFRGKISEGIDFADNYARSVISVGIPFPSIQDEKVKLKRSYND 130
TGALL ++ GK+SEGI+F+DN R V+ VG+PFP+I+ +++ K +Y D
Sbjct: 762 ERGQV----TGALLLSVVGGKMSEGINFSDNLGRCVVMVGMPFPNIRSAELQEKMAYLD 816
>sp|Q92771|DDX12_HUMAN Putative ATP-dependent RNA helicase DDX12 OS=Homo sapiens GN=DDX12P
PE=5 SV=3
Length = 950
Score = 74.7 bits (182), Expect = 1e-13, Method: Composition-based stats.
Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 4/119 (3%)
Query: 12 GSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEPRRNDELENVMLGYFTAIKQAEL 71
G P+ + W GL+ R+ K ++ EP+ ++E V+L Y ++
Sbjct: 721 GVVCFFPSYEYLRQVHAHWEKGGLLGRLAARKKIFQEPKSAHQVEQVLLAYSRCLQACGQ 780
Query: 72 RSSNTSEKNTGALLFTIFRGKISEGIDFADNYARSVISVGIPFPSIQDEKVKLKRSYND 130
TGALL ++ GK+SEGI+F+DN R V+ VG+PFP+I+ +++ K +Y D
Sbjct: 781 ERGPV----TGALLLSVVGGKMSEGINFSDNLGRCVVMVGMPFPNIRSAELQEKMAYLD 835
>sp|A8MPP1|D11L8_HUMAN Putative ATP-dependent RNA helicase DDX11-like protein 8 OS=Homo
sapiens GN=DDX11L8 PE=3 SV=1
Length = 907
Score = 74.7 bits (182), Expect = 2e-13, Method: Composition-based stats.
Identities = 36/101 (35%), Positives = 59/101 (58%), Gaps = 4/101 (3%)
Query: 30 WSSTGLMDRIREVKSVYCEPRRNDELENVMLGYFTAIKQAELRSSNTSEKNTGALLFTIF 89
W GL+ R+ K ++ EP+ ++E V+L Y I+ +E ALL ++
Sbjct: 721 WEKGGLLGRLAARKKIFQEPKSAHQVEQVLLAYSRCIQACGQERGQVTE----ALLLSVV 776
Query: 90 RGKISEGIDFADNYARSVISVGIPFPSIQDEKVKLKRSYND 130
GK+SEGI+F+DN R V+ VG+PFP+I+ +++ K +Y D
Sbjct: 777 GGKMSEGINFSDNLGRCVVMVGMPFPNIRSAELQEKMAYLD 817
>sp|A8WS58|RTEL1_CAEBR Regulator of telomere elongation helicase 1 homolog
OS=Caenorhabditis briggsae GN=rtel-1 PE=3 SV=1
Length = 994
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 53/94 (56%), Gaps = 11/94 (11%)
Query: 37 DRIREVKSVYCEPRRNDELENVMLGYFTAIKQAELRSSNTSEKNTGALLFTIFRGKISEG 96
+++ + K + EPR ++L V L Y + + GA L + RGK+SEG
Sbjct: 598 EKMEKTKKIAVEPRAKEQLAAVRLRYTQGVSEPH-----------GAALLAVCRGKVSEG 646
Query: 97 IDFADNYARSVISVGIPFPSIQDEKVKLKRSYND 130
IDF D +R+VI VGIP+P I DE+V LK+ Y D
Sbjct: 647 IDFCDAESRAVIIVGIPYPPIHDERVVLKKMYLD 680
>sp|A3LN13|CHL1_PICST ATP-dependent RNA helicase CHL1 OS=Scheffersomyces stipitis (strain
ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545)
GN=CHL1 PE=3 SV=2
Length = 835
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 63/122 (51%), Gaps = 10/122 (8%)
Query: 12 GSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEPRRNDELENVMLGYFTAIKQAEL 71
G P+ N W ST ++ +I K ++ EP +++ ++ Y IK
Sbjct: 630 GVVVFFPSYKYMNHILSIWKSTDVLTQIESQKKLFEEPTSASQVQTILADYANTIK---- 685
Query: 72 RSSNTSEKNTGALLFTIFRGKISEGIDFADNYARSVISVGIPFPSIQDEKVKLKRSYNDT 131
E+ GA+LF++ GK+SEGI+FAD R+V+ VG+P+P+ ++ KR + ++
Sbjct: 686 ------EEKKGAILFSVVGGKMSEGINFADELGRAVVMVGLPYPNAYSGEIIAKRKFIES 739
Query: 132 HA 133
A
Sbjct: 740 EA 741
>sp|Q6BZD9|CHL1_DEBHA ATP-dependent RNA helicase CHL1 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=CHL1 PE=3 SV=2
Length = 820
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 61/99 (61%), Gaps = 10/99 (10%)
Query: 30 WSSTGLMDRIREVKSVYCEPRRNDELENVMLGYFTAIKQAELRSSNTSEKNTGALLFTIF 89
W +++ + +VK+++ EP + ++E V+ Y S+N SEK++ ALL ++
Sbjct: 634 WRQNKIIESLTKVKAIFQEPEDSSKVEKVLNDY---------SSTNKSEKHS-ALLLSVV 683
Query: 90 RGKISEGIDFADNYARSVISVGIPFPSIQDEKVKLKRSY 128
GK+SEGI+F+D AR VI +G+PFP+I ++ KR +
Sbjct: 684 GGKMSEGINFSDELARGVIMIGLPFPNIFSAELIAKRKF 722
>sp|Q0VGM9|RTEL1_MOUSE Regulator of telomere elongation helicase 1 OS=Mus musculus
GN=Rtel1 PE=2 SV=2
Length = 1203
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 9/101 (8%)
Query: 30 WSSTGLMDRIREVKSVYCEPRRNDELENVMLGYFTAIKQAELRSSNTSEKNTGALLFTIF 89
W GL ++ +K ++ EPR V+ Y+ + S + GA +
Sbjct: 573 WQVQGLARKVEALKPLFVEPRNKGSFSEVIDAYYQQV---------ASPASNGATFLAVC 623
Query: 90 RGKISEGIDFADNYARSVISVGIPFPSIQDEKVKLKRSYND 130
RGK SEG+DF+D R VI G+P+P D +V LK + D
Sbjct: 624 RGKASEGLDFSDMNGRGVIVTGLPYPPRMDPRVVLKMQFLD 664
>sp|Q6H1L8|RTEL1_MUSSP Regulator of telomere elongation helicase 1 OS=Mus spretus GN=Rtel1
PE=2 SV=1
Length = 1203
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 9/101 (8%)
Query: 30 WSSTGLMDRIREVKSVYCEPRRNDELENVMLGYFTAIKQAELRSSNTSEKNTGALLFTIF 89
W GL ++ +K ++ EPR V+ Y+ + S + GA +
Sbjct: 573 WQVQGLARKVEALKPLFVEPRNKGSFSEVIDAYYQQV---------ASPASNGATFLAVC 623
Query: 90 RGKISEGIDFADNYARSVISVGIPFPSIQDEKVKLKRSYND 130
RGK SEG+DF+D R VI G+P+P D +V LK + D
Sbjct: 624 RGKASEGLDFSDMNGRGVIVTGLPYPPRMDPRVVLKMQFLD 664
>sp|Q5AD67|CHL1_CANAL ATP-dependent RNA helicase CHL1 OS=Candida albicans (strain SC5314
/ ATCC MYA-2876) GN=CHL1 PE=3 SV=1
Length = 842
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 59/102 (57%), Gaps = 10/102 (9%)
Query: 30 WSSTGLMDRIREVKSVYCEPRRNDELENVMLGYFTAIKQAELRSSNTSEKNTGALLFTIF 89
W T ++ I K+++ EP+ +E V+ Y I Q E + GA+LF++
Sbjct: 655 WRDTKILTSIESEKTIFREPKDPSNVEKVLNEYGYLI-QTERK---------GAILFSVV 704
Query: 90 RGKISEGIDFADNYARSVISVGIPFPSIQDEKVKLKRSYNDT 131
GK+SEGI+F+D+ AR+VI VG+P+P+ ++ KR Y +T
Sbjct: 705 GGKMSEGINFSDDLARAVIMVGLPYPNAYSGEMVTKRKYIET 746
>sp|Q5RJZ1|RTEL1_RAT Regulator of telomere elongation helicase 1 OS=Rattus norvegicus
GN=Rtel1 PE=2 SV=2
Length = 1274
Score = 63.9 bits (154), Expect = 3e-10, Method: Composition-based stats.
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 9/101 (8%)
Query: 30 WSSTGLMDRIREVKSVYCEPRRNDELENVMLGYFTAIKQAELRSSNTSEKNTGALLFTIF 89
W + G+ ++ +K ++ EPR V+ Y+ + S + GA +
Sbjct: 573 WQAQGMSKKVEALKPLFVEPRNKGSFSEVIDAYYQQV---------ASPGSNGATFLAVC 623
Query: 90 RGKISEGIDFADNYARSVISVGIPFPSIQDEKVKLKRSYND 130
RGK SEG+DF+D R VI G+P+P D +V LK + D
Sbjct: 624 RGKASEGLDFSDMNGRGVIVTGLPYPPRMDPRVILKMQFLD 664
>sp|Q5RE34|RTEL1_PONAB Regulator of telomere elongation helicase 1 OS=Pongo abelii
GN=RTEL1 PE=2 SV=1
Length = 1302
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 9/101 (8%)
Query: 30 WSSTGLMDRIREVKSVYCEPRRNDELENVMLGYFTAIKQAELRSSNTSEKNTGALLFTIF 89
W + L ++ +K ++ EPR + Y+ + + +TGA +
Sbjct: 574 WRARDLARKMEALKPLFVEPRSKGSFSETISAYYARV---------AAPGSTGATFLAVC 624
Query: 90 RGKISEGIDFADNYARSVISVGIPFPSIQDEKVKLKRSYND 130
RGK SEG+DF+D R VI G+P+P D +V LK + D
Sbjct: 625 RGKASEGLDFSDTNGRGVIVTGLPYPPRMDPRVVLKMQFLD 665
>sp|Q9NZ71|RTEL1_HUMAN Regulator of telomere elongation helicase 1 OS=Homo sapiens
GN=RTEL1 PE=1 SV=2
Length = 1219
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 9/101 (8%)
Query: 30 WSSTGLMDRIREVKSVYCEPRRNDELENVMLGYFTAIKQAELRSSNTSEKNTGALLFTIF 89
W + L ++ +K ++ EPR + Y+ + + +TGA +
Sbjct: 573 WRARDLARKMEALKPLFVEPRSKGSFSETISAYYARV---------AAPGSTGATFLAVC 623
Query: 90 RGKISEGIDFADNYARSVISVGIPFPSIQDEKVKLKRSYND 130
RGK SEG+DF+D R VI G+P+P D +V LK + D
Sbjct: 624 RGKASEGLDFSDTNGRGVIVTGLPYPPRMDPRVVLKMQFLD 664
>sp|A4K436|RTEL1_BOVIN Regulator of telomere elongation helicase 1 OS=Bos taurus GN=RTEL1
PE=2 SV=1
Length = 1216
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 9/101 (8%)
Query: 30 WSSTGLMDRIREVKSVYCEPRRNDELENVMLGYFTAIKQAELRSSNTSEKNTGALLFTIF 89
W + ++ K ++ EPR VM ++ + E ++GA+ +
Sbjct: 571 WRARDFTRKLEVRKPLFVEPRSKGGFSEVMEAFYARVAAPE---------SSGAIFLAVC 621
Query: 90 RGKISEGIDFADNYARSVISVGIPFPSIQDEKVKLKRSYND 130
RGK SEG+DFAD R VI G+P+P D +V LK + D
Sbjct: 622 RGKASEGLDFADVNGRGVIVTGLPYPPRMDPRVLLKMQFLD 662
>sp|A5DUW8|CHL1_LODEL ATP-dependent RNA helicase CHL1 OS=Lodderomyces elongisporus
(strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 /
NRRL YB-4239) GN=CHL1 PE=3 SV=1
Length = 892
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 56/99 (56%), Gaps = 10/99 (10%)
Query: 30 WSSTGLMDRIREVKSVYCEPRRNDELENVMLGYFTAIKQAELRSSNTSEKNTGALLFTIF 89
W T + R+ +K V+ E N +L +++ Y I NT K GA+L +
Sbjct: 705 WRETTIYSRLNLLKQVFEESVENTKLTSLLSEYSYVI--------NTQCK--GAILLAVV 754
Query: 90 RGKISEGIDFADNYARSVISVGIPFPSIQDEKVKLKRSY 128
GK+SEGI+F+DN AR+VI VG+P+P+ ++ KR++
Sbjct: 755 GGKMSEGINFSDNLARAVIMVGMPYPNAFSGEIVAKRNF 793
>sp|A5DNW6|CHL1_PICGU ATP-dependent RNA helicase CHL1 OS=Meyerozyma guilliermondii
(strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC
10279 / NRRL Y-324) GN=CHL1 PE=3 SV=2
Length = 825
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 55/99 (55%), Gaps = 12/99 (12%)
Query: 30 WSSTGLMDRIREVKSVYCEPRRNDELENVMLGYFTAIKQAELRSSNTSEKNTGALLFTIF 89
W G + +I +K V+ E + +E++ LR + + +GA+LF++
Sbjct: 641 WRKDGNLAKISTLKQVFLESSDSTSIESI------------LRDYGAAARGSGAILFSVV 688
Query: 90 RGKISEGIDFADNYARSVISVGIPFPSIQDEKVKLKRSY 128
GK+SEG++F+D AR+VI +G+P+P+ ++ KR +
Sbjct: 689 GGKMSEGVNFSDELARAVIMLGLPYPNAFSGELIAKRKF 727
>sp|Q6CIF0|CHL1_KLULA ATP-dependent RNA helicase CHL1 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=CHL1 PE=3 SV=1
Length = 807
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 40/56 (71%)
Query: 73 SSNTSEKNTGALLFTIFRGKISEGIDFADNYARSVISVGIPFPSIQDEKVKLKRSY 128
SS +K GA LF++ GK+SEGI+F DN AR+V+ VG+P+P++ ++ +K+ +
Sbjct: 659 SSTILDKKKGAFLFSVVGGKLSEGINFQDNLARAVVMVGLPYPNLYSSELLVKKRH 714
>sp|A7TTL0|CHL1_VANPO ATP-dependent RNA helicase CHL1 OS=Vanderwaltozyma polyspora
(strain ATCC 22028 / DSM 70294) GN=CHL1 PE=3 SV=1
Length = 829
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 60/107 (56%), Gaps = 16/107 (14%)
Query: 30 WSSTGLMDRIREVKSVYCEPRR-NDELENVMLGYFTAIKQAELRSSNTSEKNTGALLFTI 88
W S GL D++ +++ ++ E + +D L+ IK E R+ A+LF +
Sbjct: 649 WRSNGLFDKLNKIREIFYESKNGSDPLDEY-------IKVIEARNP--------AILFAV 693
Query: 89 FRGKISEGIDFADNYARSVISVGIPFPSIQDEKVKLKRSYNDTHAQK 135
GK+SEGI+F D+ R+V+ G+P+P++ ++ +K+++ +T K
Sbjct: 694 VGGKLSEGINFQDDLCRAVVMTGLPYPNVMSGELLIKKNHIETKILK 740
>sp|O14147|CHL1_SCHPO ATP-dependent RNA helicase chl1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=chl1 PE=3 SV=1
Length = 844
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 58/107 (54%), Gaps = 10/107 (9%)
Query: 30 WSSTGLMDRIREVKSVYCEPRRNDELENVMLGYFTAIKQAELRSSNTSEKNTGALLFTIF 89
W G+ +R+ K ++ E + + + L F KQ+ + +LF++
Sbjct: 663 WEMNGITNRLNAKKPLFIESK---DFGDNPLDTFEHYKQS-------VDAGLSGMLFSVI 712
Query: 90 RGKISEGIDFADNYARSVISVGIPFPSIQDEKVKLKRSYNDTHAQKK 136
G++SEGI+F+D R+V+ VG+PFP+ QD + + K SY + A++K
Sbjct: 713 GGRLSEGINFSDKLGRAVMVVGMPFPNSQDVEWQAKVSYVEEKAKEK 759
>sp|Q750G3|CHL1_ASHGO ATP-dependent RNA helicase CHL1 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=CHL1
PE=3 SV=1
Length = 801
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 57/99 (57%), Gaps = 13/99 (13%)
Query: 30 WSSTGLMDRIREVKSVYCEPRRNDELENVMLGYFTAIKQAELRSSNTSEKNTGALLFTIF 89
W+ GL+ R+ +K +Y E + +V+ GY I+ SEK GA+L +
Sbjct: 622 WTDRGLLSRLDAIKRIYHE---TSDGADVLKGYSETIQ---------SEKK-GAILLAVV 668
Query: 90 RGKISEGIDFADNYARSVISVGIPFPSIQDEKVKLKRSY 128
G++SEGI+F + AR+V+ VG+PFP++ ++ +K+ +
Sbjct: 669 GGRLSEGINFENELARAVVLVGLPFPNMFSGEMIVKQQH 707
>sp|A7ERG1|CHL1_SCLS1 ATP-dependent RNA helicase CHL1 OS=Sclerotinia sclerotiorum (strain
ATCC 18683 / 1980 / Ss-1) GN=CHL1 PE=3 SV=1
Length = 902
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 55/97 (56%), Gaps = 13/97 (13%)
Query: 22 SANGCEIRWSSTGLMDRIREVKSVYCEPRRNDELENVMLGYFTAIKQAELRSSNTSEKNT 81
+A G E + +++R+ E K ++ E + + +E ++ Y +I + +
Sbjct: 670 TATGTE-KGKGKTILERLSEKKPIFQE-SKEESVETILAAYAKSIAEGK----------- 716
Query: 82 GALLFTIFRGKISEGIDFADNYARSVISVGIPFPSIQ 118
GALLF++ GK+SEGI+F+D R V+ VG+PFP++
Sbjct: 717 GALLFSVVGGKLSEGINFSDALGRCVMIVGLPFPNMH 753
>sp|Q93575|RTEL1_CAEEL Regulator of telomere elongation helicase 1 homolog
OS=Caenorhabditis elegans GN=rtel-1 PE=3 SV=3
Length = 994
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 60/105 (57%), Gaps = 14/105 (13%)
Query: 29 RWSSTG---LMDRIREVKSVYCEPRRNDELENVMLGYFTAIKQAELRSSNTSEKNTGALL 85
+WSS +++ + K V EPR +EL + L Y + SE++ GA L
Sbjct: 588 KWSSNSNESFWEKMEKTKRVVVEPRAKEELAAIRLRY----------TQGVSEQH-GAAL 636
Query: 86 FTIFRGKISEGIDFADNYARSVISVGIPFPSIQDEKVKLKRSYND 130
+ RGK+SEGIDF D +R+VI +GIP+P I DE+V LK+ Y D
Sbjct: 637 LAVCRGKVSEGIDFCDAESRAVIIIGIPYPPIHDERVVLKKMYLD 681
>sp|O08811|ERCC2_MOUSE TFIIH basal transcription factor complex helicase XPD subunit
OS=Mus musculus GN=Ercc2 PE=2 SV=2
Length = 760
Score = 55.8 bits (133), Expect = 7e-08, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 11/99 (11%)
Query: 30 WSSTGLMDRIREVKSVYCEPRRNDELENVMLGYFTAIKQAELRSSNTSEKNTGALLFTIF 89
W G+++ I+ K ++ E + E + Y A E GA+L ++
Sbjct: 552 WYEQGILENIQRNKLLFIETQDGAETSVALEKYQEA-----------CENGRGAILLSVA 600
Query: 90 RGKISEGIDFADNYARSVISVGIPFPSIQDEKVKLKRSY 128
RGK+SEGIDF +Y R+VI G+P+ Q +K + Y
Sbjct: 601 RGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEY 639
>sp|P18074|ERCC2_HUMAN TFIIH basal transcription factor complex helicase XPD subunit
OS=Homo sapiens GN=ERCC2 PE=1 SV=1
Length = 760
Score = 55.8 bits (133), Expect = 7e-08, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 11/99 (11%)
Query: 30 WSSTGLMDRIREVKSVYCEPRRNDELENVMLGYFTAIKQAELRSSNTSEKNTGALLFTIF 89
W G+++ I+ K ++ E + E + Y A E GA+L ++
Sbjct: 552 WYEQGILENIQRNKLLFIETQDGAETSVALEKYQEA-----------CENGRGAILLSVA 600
Query: 90 RGKISEGIDFADNYARSVISVGIPFPSIQDEKVKLKRSY 128
RGK+SEGIDF +Y R+VI G+P+ Q +K + Y
Sbjct: 601 RGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEY 639
>sp|Q60452|ERCC2_CRIGR TFIIH basal transcription factor complex helicase XPD subunit
OS=Cricetulus griseus GN=ERCC2 PE=1 SV=1
Length = 760
Score = 55.8 bits (133), Expect = 7e-08, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 11/99 (11%)
Query: 30 WSSTGLMDRIREVKSVYCEPRRNDELENVMLGYFTAIKQAELRSSNTSEKNTGALLFTIF 89
W G+++ I+ K ++ E + E + Y A E GA+L ++
Sbjct: 552 WYEQGILENIQRNKLLFIETQDGAETSVALEKYQEA-----------CENGRGAILLSVA 600
Query: 90 RGKISEGIDFADNYARSVISVGIPFPSIQDEKVKLKRSY 128
RGK+SEGIDF +Y R+VI G+P+ Q +K + Y
Sbjct: 601 RGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEY 639
>sp|A2QY22|CHL1_ASPNC ATP-dependent RNA helicase chl1 OS=Aspergillus niger (strain CBS
513.88 / FGSC A1513) GN=chl1 PE=3 SV=1
Length = 874
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 74 SNTSEKNTGALLFTIFRGKISEGIDFADNYARSVISVGIPFPSIQDEKVKLKRSY--NDT 131
+NT + GALL ++ GK+SEGI+F+D R V+ VG+PFP+I+ + K Y T
Sbjct: 718 ANTVDSGRGALLLSVVGGKLSEGINFSDKLGRGVLIVGLPFPNIRSAVWQAKIQYIEQKT 777
Query: 132 HAQ 134
H Q
Sbjct: 778 HQQ 780
>sp|A6QLJ0|ERCC2_BOVIN TFIIH basal transcription factor complex helicase XPD subunit
OS=Bos taurus GN=ERCC2 PE=2 SV=1
Length = 760
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 11/99 (11%)
Query: 30 WSSTGLMDRIREVKSVYCEPRRNDELENVMLGYFTAIKQAELRSSNTSEKNTGALLFTIF 89
W G+++ I+ K ++ E + E + Y E GA+L ++
Sbjct: 552 WYEQGILENIQRNKLLFIETQDGAETSVALEKY-----------QEACENGRGAILLSVA 600
Query: 90 RGKISEGIDFADNYARSVISVGIPFPSIQDEKVKLKRSY 128
RGK+SEGIDF +Y R+VI G+P+ Q +K + Y
Sbjct: 601 RGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEY 639
>sp|Q6CAX3|CHL1_YARLI ATP-dependent RNA helicase CHL1 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=CHL1 PE=3 SV=1
Length = 803
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 39/64 (60%)
Query: 73 SSNTSEKNTGALLFTIFRGKISEGIDFADNYARSVISVGIPFPSIQDEKVKLKRSYNDTH 132
S E GA+L ++ GK+SEGI+F+D AR+V +G+PFP++ ++ KR Y +
Sbjct: 646 SEYAEEVPKGAILLSVVGGKMSEGINFSDGLARAVFMIGLPFPNLMSAEIIAKRKYIEQS 705
Query: 133 AQKK 136
+K
Sbjct: 706 VSEK 709
>sp|P22516|CHL1_YEAST ATP-dependent RNA helicase CHL1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=CHL1 PE=1 SV=1
Length = 861
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 14/99 (14%)
Query: 30 WSSTGLMDRIREVKSVYCEPRRNDELENVMLGYFTAIKQAELRSSNTSEKNTGALLFTIF 89
W + V+ ++ E + D+ ++ GY S++ + G+LL I
Sbjct: 680 WKQNDRFATLNNVRKIFYEAKDGDD---ILSGY-----------SDSVAEGRGSLLLAIV 725
Query: 90 RGKISEGIDFADNYARSVISVGIPFPSIQDEKVKLKRSY 128
GK+SEGI+F D+ R+V+ VG+PFP+I ++ +KR +
Sbjct: 726 GGKLSEGINFQDDLCRAVVMVGLPFPNIFSGELIVKRKH 764
>sp|A6ZWN8|CHL1_YEAS7 ATP-dependent RNA helicase CHL1 OS=Saccharomyces cerevisiae (strain
YJM789) GN=CHL1 PE=3 SV=1
Length = 861
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 14/99 (14%)
Query: 30 WSSTGLMDRIREVKSVYCEPRRNDELENVMLGYFTAIKQAELRSSNTSEKNTGALLFTIF 89
W + V+ ++ E + D+ ++ GY S++ + G+LL I
Sbjct: 680 WKQNDRFATLNNVRKIFYEAKDGDD---ILSGY-----------SDSVAEGRGSLLLAIV 725
Query: 90 RGKISEGIDFADNYARSVISVGIPFPSIQDEKVKLKRSY 128
GK+SEGI+F D+ R+V+ VG+PFP+I ++ +KR +
Sbjct: 726 GGKLSEGINFQDDLCRAVVMVGLPFPNIFSGELIVKRKH 764
>sp|A1CJ34|CHL1_ASPCL ATP-dependent RNA helicase chl1 OS=Aspergillus clavatus (strain
ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1)
GN=chl1 PE=3 SV=1
Length = 731
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 38/60 (63%)
Query: 74 SNTSEKNTGALLFTIFRGKISEGIDFADNYARSVISVGIPFPSIQDEKVKLKRSYNDTHA 133
+ T + +GALL ++ GK+SEGI+F+D R V+ +G+PFP+I+ + K Y + A
Sbjct: 573 TRTIDSGSGALLLSVIGGKLSEGINFSDRLGRGVLIIGLPFPNIRSAVWQAKLQYVEQKA 632
>sp|P26659|RAD15_SCHPO DNA repair helicase rad15 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rad15 PE=1 SV=2
Length = 772
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 12/122 (9%)
Query: 12 GSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEPRRNDELENVMLGYFTAIKQAEL 71
G A P+ W S G++D + + K + E E + Y A
Sbjct: 533 GLVAFFPSYLYLESIVSSWQSMGILDEVWKYKLILVETPDPHETTLALETYRAACSNGR- 591
Query: 72 RSSNTSEKNTGALLFTIFRGKISEGIDFADNYARSVISVGIPFPSIQDEKVKLKRSY-ND 130
GA+L ++ RGK+SEG+DF +Y R+VI GIP+ + +K + + D
Sbjct: 592 ----------GAVLLSVARGKVSEGVDFDHHYGRAVIMFGIPYQYTESRVLKARLEFLRD 641
Query: 131 TH 132
T+
Sbjct: 642 TY 643
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,286,327
Number of Sequences: 539616
Number of extensions: 1777275
Number of successful extensions: 3645
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 3554
Number of HSP's gapped (non-prelim): 71
length of query: 136
length of database: 191,569,459
effective HSP length: 101
effective length of query: 35
effective length of database: 137,068,243
effective search space: 4797388505
effective search space used: 4797388505
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)