Query psy877
Match_columns 136
No_of_seqs 124 out of 1037
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 18:47:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy877.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/877hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3crv_A XPD/RAD3 related DNA he 99.9 6.5E-26 2.2E-30 193.4 7.0 103 2-132 385-490 (551)
2 4a15_A XPD helicase, ATP-depen 99.9 1.8E-25 6.2E-30 193.9 6.8 104 2-133 440-545 (620)
3 2vl7_A XPD; helicase, unknown 99.9 5E-25 1.7E-29 187.8 9.3 106 2-134 376-483 (540)
4 2rb4_A ATP-dependent RNA helic 97.6 0.00034 1.2E-08 50.3 9.1 83 6-114 29-113 (175)
5 1fuk_A Eukaryotic initiation f 97.6 0.00026 8.8E-09 50.5 8.0 79 11-115 31-110 (165)
6 2hjv_A ATP-dependent RNA helic 97.6 0.00065 2.2E-08 48.3 9.4 78 11-114 36-114 (163)
7 1xti_A Probable ATP-dependent 97.6 0.00035 1.2E-08 55.0 8.7 78 11-114 251-329 (391)
8 3pey_A ATP-dependent RNA helic 97.5 0.00054 1.8E-08 53.7 8.6 78 11-114 244-322 (395)
9 1t5i_A C_terminal domain of A 97.4 0.00067 2.3E-08 48.9 8.2 78 11-114 32-110 (172)
10 2p6n_A ATP-dependent RNA helic 97.4 0.00052 1.8E-08 50.6 7.7 81 8-114 52-133 (191)
11 1hv8_A Putative ATP-dependent 97.3 0.0011 3.8E-08 51.3 8.2 79 10-114 238-317 (367)
12 1wp9_A ATP-dependent RNA helic 97.2 0.0021 7.1E-08 51.0 9.7 79 10-114 361-448 (494)
13 2db3_A ATP-dependent RNA helic 97.2 0.0015 5.2E-08 53.3 8.4 81 8-114 298-379 (434)
14 3fht_A ATP-dependent RNA helic 97.1 0.0026 9E-08 50.2 9.0 80 11-116 267-347 (412)
15 3eaq_A Heat resistant RNA depe 97.1 0.0032 1.1E-07 46.8 8.8 79 10-114 31-110 (212)
16 2jgn_A DBX, DDX3, ATP-dependen 97.1 0.0024 8.3E-08 46.5 7.9 78 11-114 47-125 (185)
17 2i4i_A ATP-dependent RNA helic 97.1 0.0026 8.9E-08 50.5 8.6 77 12-114 278-355 (417)
18 3sqw_A ATP-dependent RNA helic 97.0 0.0039 1.3E-07 52.6 9.8 82 11-116 289-372 (579)
19 2j0s_A ATP-dependent RNA helic 97.0 0.0052 1.8E-07 48.8 9.6 78 11-114 277-355 (410)
20 3i5x_A ATP-dependent RNA helic 96.9 0.0054 1.8E-07 51.2 9.9 82 11-116 340-423 (563)
21 2yjt_D ATP-dependent RNA helic 95.9 0.00015 5.1E-09 52.1 0.0 80 11-116 31-111 (170)
22 1s2m_A Putative ATP-dependent 96.8 0.0069 2.3E-07 47.8 8.7 78 11-114 259-337 (400)
23 2z0m_A 337AA long hypothetical 96.5 0.0046 1.6E-07 47.3 6.1 75 10-114 220-295 (337)
24 3eiq_A Eukaryotic initiation f 96.5 0.0032 1.1E-07 49.8 5.3 79 11-115 281-360 (414)
25 3i32_A Heat resistant RNA depe 96.5 0.024 8.1E-07 44.8 10.2 80 10-115 28-108 (300)
26 1oyw_A RECQ helicase, ATP-depe 96.4 0.014 4.7E-07 49.1 8.8 78 11-114 237-315 (523)
27 3oiy_A Reverse gyrase helicase 96.2 0.0099 3.4E-07 47.6 6.5 77 9-114 251-331 (414)
28 2v1x_A ATP-dependent DNA helic 96.1 0.023 7.7E-07 48.8 8.8 78 11-114 268-346 (591)
29 1fuu_A Yeast initiation factor 95.9 0.0013 4.3E-08 51.7 0.0 80 11-116 260-340 (394)
30 4gl2_A Interferon-induced heli 95.7 0.015 5E-07 49.7 5.7 85 10-114 400-493 (699)
31 3tbk_A RIG-I helicase domain; 95.5 0.041 1.4E-06 44.8 7.7 85 11-116 390-483 (555)
32 1gku_B Reverse gyrase, TOP-RG; 95.5 0.036 1.2E-06 50.6 7.8 81 5-113 270-352 (1054)
33 2d7d_A Uvrabc system protein B 95.4 0.11 3.6E-06 45.2 10.0 77 12-114 447-524 (661)
34 4a2p_A RIG-I, retinoic acid in 95.3 0.042 1.4E-06 45.0 7.0 83 11-114 391-482 (556)
35 2whx_A Serine protease/ntpase/ 95.0 0.051 1.7E-06 46.9 6.9 75 10-114 355-429 (618)
36 2z83_A Helicase/nucleoside tri 95.0 0.011 3.8E-07 48.8 2.7 72 10-111 190-261 (459)
37 2jlq_A Serine protease subunit 94.9 0.04 1.4E-06 45.3 5.8 72 10-111 188-259 (451)
38 3h1t_A Type I site-specific re 94.8 0.12 4E-06 43.5 8.6 88 11-114 440-528 (590)
39 3fmp_B ATP-dependent RNA helic 94.7 0.0054 1.9E-07 50.2 0.0 78 11-114 334-412 (479)
40 3fho_A ATP-dependent RNA helic 94.7 0.008 2.7E-07 50.1 1.0 78 11-114 358-436 (508)
41 2oca_A DAR protein, ATP-depend 94.6 0.085 2.9E-06 43.3 6.9 82 10-116 347-429 (510)
42 2v6i_A RNA helicase; membrane, 94.5 0.15 5.2E-06 41.6 8.2 64 10-100 171-234 (431)
43 1c4o_A DNA nucleotide excision 94.4 0.13 4.5E-06 44.6 8.1 77 11-113 440-517 (664)
44 1z63_A Helicase of the SNF2/RA 94.1 0.22 7.4E-06 40.7 8.3 82 12-117 343-426 (500)
45 4a2q_A RIG-I, retinoic acid in 94.0 0.12 4E-06 45.4 6.9 84 11-114 632-723 (797)
46 2fwr_A DNA repair protein RAD2 93.9 0.059 2E-06 43.8 4.5 74 11-114 350-423 (472)
47 1z5z_A Helicase of the SNF2/RA 93.6 0.55 1.9E-05 36.1 9.4 85 11-119 113-199 (271)
48 1yks_A Genome polyprotein [con 93.5 0.11 3.7E-06 42.6 5.5 72 10-111 177-248 (440)
49 2wv9_A Flavivirin protease NS2 93.5 0.13 4.3E-06 45.0 6.1 74 10-113 410-483 (673)
50 2ykg_A Probable ATP-dependent 92.9 0.15 5E-06 43.5 5.6 85 11-116 399-492 (696)
51 4a2w_A RIG-I, retinoic acid in 92.9 0.19 6.5E-06 45.2 6.5 83 11-114 632-723 (936)
52 4ddu_A Reverse gyrase; topoiso 92.7 0.14 4.9E-06 47.0 5.6 80 8-114 307-388 (1104)
53 3dmq_A RNA polymerase-associat 92.5 0.2 6.7E-06 45.3 6.1 80 11-114 504-585 (968)
54 3rc3_A ATP-dependent RNA helic 92.2 1.2 4E-05 39.0 10.5 84 7-115 317-401 (677)
55 1z3i_X Similar to RAD54-like; 92.2 0.98 3.3E-05 38.7 9.8 78 12-114 418-498 (644)
56 4a4z_A Antiviral helicase SKI2 92.0 0.34 1.2E-05 44.0 7.0 84 11-114 337-453 (997)
57 3mwy_W Chromo domain-containin 90.5 0.42 1.4E-05 42.1 5.9 80 12-114 574-654 (800)
58 2eyq_A TRCF, transcription-rep 85.6 1.4 4.8E-05 40.6 6.3 79 11-113 813-892 (1151)
59 2va8_A SSO2462, SKI2-type heli 83.9 5.1 0.00017 34.3 8.7 81 11-111 253-363 (715)
60 2zj8_A DNA helicase, putative 83.0 3.7 0.00013 35.3 7.5 75 11-102 238-339 (720)
61 2xgj_A ATP-dependent RNA helic 81.2 5.4 0.00018 36.3 8.1 82 12-113 345-459 (1010)
62 2xau_A PRE-mRNA-splicing facto 80.4 0.86 2.9E-05 40.2 2.6 88 10-113 303-397 (773)
63 2p6r_A Afuhel308 helicase; pro 80.1 5.2 0.00018 34.3 7.4 75 11-102 243-341 (702)
64 3l9o_A ATP-dependent RNA helic 78.1 3.1 0.00011 38.3 5.6 87 11-116 442-561 (1108)
65 3o8b_A HCV NS3 protease/helica 71.4 5.5 0.00019 34.8 5.2 68 11-111 397-464 (666)
66 3jux_A Protein translocase sub 63.5 13 0.00044 33.4 6.0 64 12-100 476-539 (822)
67 4f92_B U5 small nuclear ribonu 58.0 28 0.00095 33.6 7.6 29 81-114 1239-1267(1724)
68 1tf5_A Preprotein translocase 57.7 14 0.00047 33.3 5.2 64 12-100 434-497 (844)
69 1gm5_A RECG; helicase, replica 46.4 5.8 0.0002 35.2 0.9 43 53-114 626-668 (780)
70 2w00_A HSDR, R.ECOR124I; ATP-b 45.9 55 0.0019 30.0 7.2 29 81-114 649-677 (1038)
71 2fsf_A Preprotein translocase 45.7 27 0.00092 31.5 5.1 65 12-101 443-507 (853)
72 2oq3_A Mannitol-specific crypt 44.5 14 0.0005 25.0 2.6 28 85-114 81-110 (150)
73 2zc2_A DNAD-like replication p 40.0 18 0.00062 22.1 2.3 18 18-35 53-70 (78)
74 2a0j_A PTS system, nitrogen re 38.5 15 0.00051 24.8 1.9 25 91-115 81-108 (149)
75 1sn9_A BBAT, tetrameric beta-B 38.0 8.6 0.00029 19.0 0.4 16 17-32 4-19 (26)
76 1a6j_A Nitrogen regulatory IIA 36.2 17 0.00057 25.1 1.9 25 91-115 88-115 (163)
77 1nkt_A Preprotein translocase 35.8 31 0.0011 31.4 3.9 66 12-102 462-527 (922)
78 3oxp_A Phosphotransferase enzy 31.9 30 0.001 23.4 2.6 24 91-114 84-110 (150)
79 2i5u_A DNAD domain protein; st 30.7 23 0.00079 22.1 1.7 18 18-35 58-75 (83)
80 3urr_A PTS IIA-like nitrogen-r 29.8 25 0.00084 23.9 1.8 25 91-115 83-110 (153)
81 3bjv_A RMPA; alpha/beta three 26.7 19 0.00064 24.8 0.8 24 91-114 83-107 (161)
82 2oqt_A Hypothetical protein SP 25.5 20 0.0007 24.7 0.8 24 91-114 84-108 (162)
83 1a3a_A Mannitol-specific EII; 25.2 42 0.0014 22.5 2.3 27 85-113 78-107 (148)
84 3lf6_A Putative phosphotransfe 24.9 39 0.0013 23.4 2.2 25 91-115 89-120 (161)
85 1t07_A Hypothetical UPF0269 pr 23.7 28 0.00094 23.0 1.1 17 84-100 6-22 (94)
86 1xs8_A UPF0269 protein YGGX; h 22.2 28 0.00095 22.8 0.8 17 84-100 4-20 (91)
87 3t43_A HIV epitope-scaffold 4E 21.7 49 0.0017 23.1 2.2 24 91-114 64-94 (162)
88 3gon_A Phosphomevalonate kinas 20.8 1.3E+02 0.0043 22.5 4.6 30 13-49 299-328 (335)
No 1
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.92 E-value=6.5e-26 Score=193.40 Aligned_cols=103 Identities=19% Similarity=0.282 Sum_probs=88.6
Q ss_pred cccccccccCcEEEEecCHHHHHHHHHHHhcCCcchhhccceeEEEcCCCchhHHHHHHHHHHHHhhhhhhcCCccCCCC
Q psy877 2 IGEPSCWLIRGSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEPRRNDELENVMLGYFTAIKQAELRSSNTSEKNT 81 (136)
Q Consensus 2 i~~~~~~~~gg~lvFFpSY~~m~~~~~~~~~~~~~~~l~~~k~if~E~~~~~~~~~~l~~f~~~~~~~~~~~~~~~~~~~ 81 (136)
|.+++..+|||+|||||||.+|+++++. ..++||+|+++.+ .+++++.|++ .+
T Consensus 385 i~~l~~~~~g~~lvlF~Sy~~l~~v~~~-----------~~~~v~~q~~~~~-~~~~~~~~~~---------------~~ 437 (551)
T 3crv_A 385 LLKIYFQAKANVLVVFPSYEIMDRVMSR-----------ISLPKYVESEDSS-VEDLYSAISA---------------NN 437 (551)
T ss_dssp HHHHHHHCSSEEEEEESCHHHHHHHHTT-----------CCSSEEECCSSCC-HHHHHHHTTS---------------SS
T ss_pred HHHHHHhCCCCEEEEecCHHHHHHHHHh-----------cCCcEEEcCCCCC-HHHHHHHHHh---------------cC
Confidence 4456677899999999999999999862 1377999988643 4678888862 24
Q ss_pred CeEEEEeecCccccccccC---CCcceEEEEEcCCCCCCCcHHHHHHHHHHHhh
Q psy877 82 GALLFTIFRGKISEGIDFA---DNYARSVISVGIPFPSIQDEKVKLKRSYNDTH 132 (136)
Q Consensus 82 gailfaV~~Gk~SEGIDf~---d~~~r~ViivGiPyp~~~d~~~~~k~~y~d~~ 132 (136)
++|||||+||++||||||+ |+.||+|||+|+|||+| ||.+++|++|++++
T Consensus 438 ~~vl~~v~gg~~~EGiD~~d~~g~~l~~viI~~lPfp~~-dp~~~ar~~~~~~~ 490 (551)
T 3crv_A 438 KVLIGSVGKGKLAEGIELRNNDRSLISDVVIVGIPYPPP-DDYLKILAQRVSLK 490 (551)
T ss_dssp SCEEEEESSCCSCCSSCCEETTEESEEEEEEESCCCCCC-SHHHHHHHHHTTCC
T ss_pred CeEEEEEecceecccccccccCCcceeEEEEEcCCCCCC-CHHHHHHHHHHHHh
Confidence 7999999999999999999 99999999999999999 99999999999854
No 2
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.91 E-value=1.8e-25 Score=193.93 Aligned_cols=104 Identities=23% Similarity=0.315 Sum_probs=81.5
Q ss_pred cccccccccCcEEEEecCHHHHHHHHHHHhcCCcchhhccceeEEEcCCCc--hhHHHHHHHHHHHHhhhhhhcCCccCC
Q psy877 2 IGEPSCWLIRGSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEPRRN--DELENVMLGYFTAIKQAELRSSNTSEK 79 (136)
Q Consensus 2 i~~~~~~~~gg~lvFFpSY~~m~~~~~~~~~~~~~~~l~~~k~if~E~~~~--~~~~~~l~~f~~~~~~~~~~~~~~~~~ 79 (136)
|.+++..+|||+|||||||.+|+++++.|+. +. .+ |+++. .+.+.++++|+ .
T Consensus 440 i~~l~~~~~g~~lvlF~Sy~~l~~v~~~l~~------~~--~~---~~q~~~~~~~~~ll~~f~----~----------- 493 (620)
T 4a15_A 440 IEDIILKVKKNTIVYFPSYSLMDRVENRVSF------EH--MK---EYRGIDQKELYSMLKKFR----R----------- 493 (620)
T ss_dssp HHHHHHHHCSCEEEEESCHHHHHHHTSSCCS------CC--EE---CCTTCCSHHHHHHHHHHT----T-----------
T ss_pred HHHHHHhCCCCEEEEeCCHHHHHHHHHHHHh------cc--hh---ccCCCChhHHHHHHHHhc----c-----------
Confidence 4456667899999999999999999999982 11 22 66653 36889999998 1
Q ss_pred CCCeEEEEeecCccccccccCCCcceEEEEEcCCCCCCCcHHHHHHHHHHHhhc
Q psy877 80 NTGALLFTIFRGKISEGIDFADNYARSVISVGIPFPSIQDEKVKLKRSYNDTHA 133 (136)
Q Consensus 80 ~~gailfaV~~Gk~SEGIDf~d~~~r~ViivGiPyp~~~d~~~~~k~~y~d~~~ 133 (136)
+++|||||+||++||||||+|+.+|+|||+|+|||+| ||.++++++|++++.
T Consensus 494 -~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~~-~p~~~ar~~~~~~~~ 545 (620)
T 4a15_A 494 -DHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFPRP-DAINRSLFDYYERKY 545 (620)
T ss_dssp -SCCEEEEETTSCC--------CCCCEEEESSCCCCCC-CHHHHHHHHHHHHHH
T ss_pred -CCcEEEEEecCceeccccCCCCceEEEEEEcCCCCCC-CHHHHHHHHHHHHhh
Confidence 4899999999999999999999999999999999999 699999999998865
No 3
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.91 E-value=5e-25 Score=187.83 Aligned_cols=106 Identities=20% Similarity=0.281 Sum_probs=80.8
Q ss_pred cccccccccCcEEEEecCHHHHHHHHHHHhcCCcchhhccceeEEEcCCCchhHHHHHHHHHHHHhhhhhhcCCccCCCC
Q psy877 2 IGEPSCWLIRGSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEPRRNDELENVMLGYFTAIKQAELRSSNTSEKNT 81 (136)
Q Consensus 2 i~~~~~~~~gg~lvFFpSY~~m~~~~~~~~~~~~~~~l~~~k~if~E~~~~~~~~~~l~~f~~~~~~~~~~~~~~~~~~~ 81 (136)
|.+++...|||+|||||||.+|+++++.|+. +++++|+++ .+.++++++|+. +
T Consensus 376 l~~~~~~~~g~~lvff~S~~~~~~v~~~l~~----------~~~~~q~~~-~~~~~~l~~f~~----------------~ 428 (540)
T 2vl7_A 376 LKRIYENSSKSVLVFFPSYEMLESVRIHLSG----------IPVIEENKK-TRHEEVLELMKT----------------G 428 (540)
T ss_dssp HHHHHHTCSSEEEEEESCHHHHHHHHTTCTT----------SCEEESTTT-CCHHHHHHHHHT----------------S
T ss_pred HHHHHHhCCCCEEEEeCCHHHHHHHHHHhcc----------CceEecCCC-CcHHHHHHHHhc----------------C
Confidence 3455667789999999999999999998864 568999876 567899999964 3
Q ss_pred CeEEEEeecCccccccccCCC--cceEEEEEcCCCCCCCcHHHHHHHHHHHhhcc
Q psy877 82 GALLFTIFRGKISEGIDFADN--YARSVISVGIPFPSIQDEKVKLKRSYNDTHAQ 134 (136)
Q Consensus 82 gailfaV~~Gk~SEGIDf~d~--~~r~ViivGiPyp~~~d~~~~~k~~y~d~~~~ 134 (136)
++|||||++|++||||||+|+ ++|+|||+|+|||++.||.+++|++|+++++.
T Consensus 429 ~~il~~V~~~~~~EGiD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~ 483 (540)
T 2vl7_A 429 KYLVMLVMRAKESEGVEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTG 483 (540)
T ss_dssp CCEEEEEC---------------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHT
T ss_pred CeEEEEEecCceecceecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhC
Confidence 689999999999999999998 99999999999999999999999999987654
No 4
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=97.65 E-value=0.00034 Score=50.30 Aligned_cols=83 Identities=11% Similarity=0.137 Sum_probs=61.3
Q ss_pred cccccC-cEEEEecCHHHHHHHHHHHhcCCcchhhccceeEEEcCCC-chhHHHHHHHHHHHHhhhhhhcCCccCCCCCe
Q psy877 6 SCWLIR-GSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEPRR-NDELENVMLGYFTAIKQAELRSSNTSEKNTGA 83 (136)
Q Consensus 6 ~~~~~g-g~lvFFpSY~~m~~~~~~~~~~~~~~~l~~~k~if~E~~~-~~~~~~~l~~f~~~~~~~~~~~~~~~~~~~ga 83 (136)
....++ -+|||+++-...+.+.+.+...++ .-.++-+.. ..+...+++.|+. +.-.
T Consensus 29 l~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~-------~~~~~~g~~~~~~R~~~~~~f~~---------------g~~~ 86 (175)
T 2rb4_A 29 YGSITIGQAIIFCQTRRNAKWLTVEMIQDGH-------QVSLLSGELTVEQRASIIQRFRD---------------GKEK 86 (175)
T ss_dssp HTTSCCSEEEEECSCHHHHHHHHHHHHTTTC-------CEEEECSSCCHHHHHHHHHHHHT---------------TSCS
T ss_pred HHhCCCCCEEEEECCHHHHHHHHHHHHHcCC-------cEEEEeCCCCHHHHHHHHHHHHc---------------CCCe
Confidence 333444 499999999999999999987543 223333332 3467888999874 3456
Q ss_pred EEEEeecCccccccccCCCcceEEEEEcCCC
Q psy877 84 LLFTIFRGKISEGIDFADNYARSVISVGIPF 114 (136)
Q Consensus 84 ilfaV~~Gk~SEGIDf~d~~~r~ViivGiPy 114 (136)
+|+|. ..+++|+|+++ ++.||..++|.
T Consensus 87 vLvaT--~~~~~Gid~~~--~~~Vi~~d~p~ 113 (175)
T 2rb4_A 87 VLITT--NVCARGIDVKQ--VTIVVNFDLPV 113 (175)
T ss_dssp EEEEC--CSCCTTTCCTT--EEEEEESSCCC
T ss_pred EEEEe--cchhcCCCccc--CCEEEEeCCCC
Confidence 88877 89999999987 88999999884
No 5
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=97.62 E-value=0.00026 Score=50.46 Aligned_cols=79 Identities=11% Similarity=0.192 Sum_probs=59.2
Q ss_pred CcEEEEecCHHHHHHHHHHHhcCCcchhhccceeEEEcCC-CchhHHHHHHHHHHHHhhhhhhcCCccCCCCCeEEEEee
Q psy877 11 RGSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEPR-RNDELENVMLGYFTAIKQAELRSSNTSEKNTGALLFTIF 89 (136)
Q Consensus 11 gg~lvFFpSY~~m~~~~~~~~~~~~~~~l~~~k~if~E~~-~~~~~~~~l~~f~~~~~~~~~~~~~~~~~~~gailfaV~ 89 (136)
+.+|||+++-...+.+.+.+...++ .-..+-+. +..+...+++.|++ +.-.+|+|.
T Consensus 31 ~~~lVF~~~~~~~~~l~~~L~~~~~-------~~~~~~~~~~~~~r~~~~~~f~~---------------g~~~vlv~T- 87 (165)
T 1fuk_A 31 TQAVIFCNTRRKVEELTTKLRNDKF-------TVSAIYSDLPQQERDTIMKEFRS---------------GSSRILIST- 87 (165)
T ss_dssp SCEEEEESSHHHHHHHHHHHHHTTC-------CEEEECTTSCHHHHHHHHHHHHT---------------TSCSEEEEE-
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCC-------CEEEEECCCCHHHHHHHHHHHHc---------------CCCEEEEEc-
Confidence 4599999999999999999986542 22233333 23467888888874 345788777
Q ss_pred cCccccccccCCCcceEEEEEcCCCC
Q psy877 90 RGKISEGIDFADNYARSVISVGIPFP 115 (136)
Q Consensus 90 ~Gk~SEGIDf~d~~~r~ViivGiPyp 115 (136)
..+++|+|+++ +..||..++|..
T Consensus 88 -~~~~~G~d~~~--~~~Vi~~~~p~~ 110 (165)
T 1fuk_A 88 -DLLARGIDVQQ--VSLVINYDLPAN 110 (165)
T ss_dssp -GGGTTTCCCCS--CSEEEESSCCSS
T ss_pred -ChhhcCCCccc--CCEEEEeCCCCC
Confidence 89999999996 788999998864
No 6
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=97.55 E-value=0.00065 Score=48.30 Aligned_cols=78 Identities=15% Similarity=0.149 Sum_probs=59.2
Q ss_pred CcEEEEecCHHHHHHHHHHHhcCCcchhhccceeEEEcCCC-chhHHHHHHHHHHHHhhhhhhcCCccCCCCCeEEEEee
Q psy877 11 RGSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEPRR-NDELENVMLGYFTAIKQAELRSSNTSEKNTGALLFTIF 89 (136)
Q Consensus 11 gg~lvFFpSY~~m~~~~~~~~~~~~~~~l~~~k~if~E~~~-~~~~~~~l~~f~~~~~~~~~~~~~~~~~~~gailfaV~ 89 (136)
+-+|||+++-...+.+.+.+...++ .-..+-+.. ..+...++++|++ +.-.+|+|.
T Consensus 36 ~~~lVF~~~~~~~~~l~~~L~~~~~-------~~~~~hg~~~~~~r~~~~~~f~~---------------g~~~vlv~T- 92 (163)
T 2hjv_A 36 DSCIIFCRTKEHVNQLTDELDDLGY-------PCDKIHGGMIQEDRFDVMNEFKR---------------GEYRYLVAT- 92 (163)
T ss_dssp SSEEEECSSHHHHHHHHHHHHHTTC-------CEEEECTTSCHHHHHHHHHHHHT---------------TSCSEEEEC-
T ss_pred CcEEEEECCHHHHHHHHHHHHHcCC-------cEEEEeCCCCHHHHHHHHHHHHc---------------CCCeEEEEC-
Confidence 4599999999999999999987543 223333332 3467888998874 245688777
Q ss_pred cCccccccccCCCcceEEEEEcCCC
Q psy877 90 RGKISEGIDFADNYARSVISVGIPF 114 (136)
Q Consensus 90 ~Gk~SEGIDf~d~~~r~ViivGiPy 114 (136)
..+++|+|+++ ++.||..++|.
T Consensus 93 -~~~~~Gld~~~--~~~Vi~~~~p~ 114 (163)
T 2hjv_A 93 -DVAARGIDIEN--ISLVINYDLPL 114 (163)
T ss_dssp -GGGTTTCCCSC--CSEEEESSCCS
T ss_pred -ChhhcCCchhc--CCEEEEeCCCC
Confidence 89999999997 78899999886
No 7
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=97.55 E-value=0.00035 Score=55.02 Aligned_cols=78 Identities=6% Similarity=0.044 Sum_probs=60.3
Q ss_pred CcEEEEecCHHHHHHHHHHHhcCCcchhhccceeEEEcCCC-chhHHHHHHHHHHHHhhhhhhcCCccCCCCCeEEEEee
Q psy877 11 RGSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEPRR-NDELENVMLGYFTAIKQAELRSSNTSEKNTGALLFTIF 89 (136)
Q Consensus 11 gg~lvFFpSY~~m~~~~~~~~~~~~~~~l~~~k~if~E~~~-~~~~~~~l~~f~~~~~~~~~~~~~~~~~~~gailfaV~ 89 (136)
+.+|||++|....+.+.+.+...++ ...++-... ..+...++++|++ +...+|+|.
T Consensus 251 ~~~lvf~~~~~~~~~l~~~L~~~~~-------~~~~~~~~~~~~~r~~~~~~f~~---------------~~~~vlv~T- 307 (391)
T 1xti_A 251 NQVVIFVKSVQRCIALAQLLVEQNF-------PAIAIHRGMPQEERLSRYQQFKD---------------FQRRILVAT- 307 (391)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTC-------CEEEECTTSCHHHHHHHHHHHHT---------------TCCSEEEES-
T ss_pred CcEEEEeCcHHHHHHHHHHHHhCCC-------cEEEEeCCCCHHHHHHHHHHHhc---------------CCCcEEEEC-
Confidence 4599999999999999999987543 223444333 3467888888864 346788877
Q ss_pred cCccccccccCCCcceEEEEEcCCC
Q psy877 90 RGKISEGIDFADNYARSVISVGIPF 114 (136)
Q Consensus 90 ~Gk~SEGIDf~d~~~r~ViivGiPy 114 (136)
..+++|+|+++ ++.||..+.|.
T Consensus 308 -~~~~~Gidi~~--~~~Vi~~~~p~ 329 (391)
T 1xti_A 308 -NLFGRGMDIER--VNIAFNYDMPE 329 (391)
T ss_dssp -CCCSSCBCCTT--EEEEEESSCCS
T ss_pred -ChhhcCCCccc--CCEEEEeCCCC
Confidence 89999999987 88999999885
No 8
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=97.46 E-value=0.00054 Score=53.67 Aligned_cols=78 Identities=18% Similarity=0.224 Sum_probs=59.8
Q ss_pred CcEEEEecCHHHHHHHHHHHhcCCcchhhccceeEEEcCCC-chhHHHHHHHHHHHHhhhhhhcCCccCCCCCeEEEEee
Q psy877 11 RGSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEPRR-NDELENVMLGYFTAIKQAELRSSNTSEKNTGALLFTIF 89 (136)
Q Consensus 11 gg~lvFFpSY~~m~~~~~~~~~~~~~~~l~~~k~if~E~~~-~~~~~~~l~~f~~~~~~~~~~~~~~~~~~~gailfaV~ 89 (136)
+.+|||+++....+.+++.++..+. .-.++-... ..+.+.++++|++ +...+|+|.
T Consensus 244 ~~~lvf~~~~~~~~~l~~~l~~~~~-------~~~~~~~~~~~~~r~~~~~~f~~---------------g~~~vlv~T- 300 (395)
T 3pey_A 244 GSSIIFVATKKTANVLYGKLKSEGH-------EVSILHGDLQTQERDRLIDDFRE---------------GRSKVLITT- 300 (395)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTC-------CCEEECTTSCHHHHHHHHHHHHT---------------TSCCEEEEC-
T ss_pred CCEEEEeCCHHHHHHHHHHHHhcCC-------cEEEeCCCCCHHHHHHHHHHHHC---------------CCCCEEEEC-
Confidence 4599999999999999999987543 223333332 3467888998874 345688777
Q ss_pred cCccccccccCCCcceEEEEEcCCC
Q psy877 90 RGKISEGIDFADNYARSVISVGIPF 114 (136)
Q Consensus 90 ~Gk~SEGIDf~d~~~r~ViivGiPy 114 (136)
..+++|||+++ ++.||..++|.
T Consensus 301 -~~~~~Gidip~--~~~Vi~~~~p~ 322 (395)
T 3pey_A 301 -NVLARGIDIPT--VSMVVNYDLPT 322 (395)
T ss_dssp -GGGSSSCCCTT--EEEEEESSCCB
T ss_pred -ChhhcCCCccc--CCEEEEcCCCC
Confidence 89999999997 88999999885
No 9
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=97.42 E-value=0.00067 Score=48.86 Aligned_cols=78 Identities=6% Similarity=0.044 Sum_probs=59.0
Q ss_pred CcEEEEecCHHHHHHHHHHHhcCCcchhhccceeEEEcCCC-chhHHHHHHHHHHHHhhhhhhcCCccCCCCCeEEEEee
Q psy877 11 RGSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEPRR-NDELENVMLGYFTAIKQAELRSSNTSEKNTGALLFTIF 89 (136)
Q Consensus 11 gg~lvFFpSY~~m~~~~~~~~~~~~~~~l~~~k~if~E~~~-~~~~~~~l~~f~~~~~~~~~~~~~~~~~~~gailfaV~ 89 (136)
+-+|||+++-...+.+.+.+...++ .-..+-+.. ..+...+++.|+. +.-.+|+|.
T Consensus 32 ~~~lVF~~~~~~~~~l~~~L~~~~~-------~~~~~hg~~~~~~r~~~~~~f~~---------------g~~~vLvaT- 88 (172)
T 1t5i_A 32 NQVVIFVKSVQRCIALAQLLVEQNF-------PAIAIHRGMPQEERLSRYQQFKD---------------FQRRILVAT- 88 (172)
T ss_dssp SSEEEECSSHHHHHHHHHHHHHTTC-------CEEEECTTSCHHHHHHHHHHHHT---------------TSCSEEEES-
T ss_pred CcEEEEECCHHHHHHHHHHHHhcCC-------CEEEEECCCCHHHHHHHHHHHHC---------------CCCcEEEEC-
Confidence 3599999999999999999987543 223333332 3467889999874 345778777
Q ss_pred cCccccccccCCCcceEEEEEcCCC
Q psy877 90 RGKISEGIDFADNYARSVISVGIPF 114 (136)
Q Consensus 90 ~Gk~SEGIDf~d~~~r~ViivGiPy 114 (136)
..+++|+|+++ ++.||..++|.
T Consensus 89 -~~~~~Gldi~~--~~~Vi~~d~p~ 110 (172)
T 1t5i_A 89 -NLFGRGMDIER--VNIAFNYDMPE 110 (172)
T ss_dssp -SCCSTTCCGGG--CSEEEESSCCS
T ss_pred -CchhcCcchhh--CCEEEEECCCC
Confidence 89999999986 78899998885
No 10
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=97.42 E-value=0.00052 Score=50.57 Aligned_cols=81 Identities=15% Similarity=0.165 Sum_probs=60.4
Q ss_pred cccCcEEEEecCHHHHHHHHHHHhcCCcchhhccceeEEEcCCC-chhHHHHHHHHHHHHhhhhhhcCCccCCCCCeEEE
Q psy877 8 WLIRGSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEPRR-NDELENVMLGYFTAIKQAELRSSNTSEKNTGALLF 86 (136)
Q Consensus 8 ~~~gg~lvFFpSY~~m~~~~~~~~~~~~~~~l~~~k~if~E~~~-~~~~~~~l~~f~~~~~~~~~~~~~~~~~~~gailf 86 (136)
..++.+|||+++-...+.+.+.+...++ ....+-+.. ..+...++++|++ +.-.+|+
T Consensus 52 ~~~~~~lVF~~~~~~~~~l~~~L~~~g~-------~~~~lhg~~~~~~R~~~l~~F~~---------------g~~~vLv 109 (191)
T 2p6n_A 52 KTPPPVLIFAEKKADVDAIHEYLLLKGV-------EAVAIHGGKDQEERTKAIEAFRE---------------GKKDVLV 109 (191)
T ss_dssp TSCSCEEEECSCHHHHHHHHHHHHHHTC-------CEEEECTTSCHHHHHHHHHHHHH---------------TSCSEEE
T ss_pred hCCCCEEEEECCHHHHHHHHHHHHHcCC-------cEEEEeCCCCHHHHHHHHHHHhc---------------CCCEEEE
Confidence 3445699999999999999999876442 223343332 3467889999985 2456787
Q ss_pred EeecCccccccccCCCcceEEEEEcCCC
Q psy877 87 TIFRGKISEGIDFADNYARSVISVGIPF 114 (136)
Q Consensus 87 aV~~Gk~SEGIDf~d~~~r~ViivGiPy 114 (136)
|. ..+++|+|+++ ++.||..++|.
T Consensus 110 aT--~~~~~Gldi~~--v~~VI~~d~p~ 133 (191)
T 2p6n_A 110 AT--DVASKGLDFPA--IQHVINYDMPE 133 (191)
T ss_dssp EC--HHHHTTCCCCC--CSEEEESSCCS
T ss_pred Ec--CchhcCCCccc--CCEEEEeCCCC
Confidence 77 88999999987 67899988875
No 11
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=97.26 E-value=0.0011 Score=51.31 Aligned_cols=79 Identities=18% Similarity=0.135 Sum_probs=59.7
Q ss_pred cCcEEEEecCHHHHHHHHHHHhcCCcchhhccceeEEEcCCC-chhHHHHHHHHHHHHhhhhhhcCCccCCCCCeEEEEe
Q psy877 10 IRGSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEPRR-NDELENVMLGYFTAIKQAELRSSNTSEKNTGALLFTI 88 (136)
Q Consensus 10 ~gg~lvFFpSY~~m~~~~~~~~~~~~~~~l~~~k~if~E~~~-~~~~~~~l~~f~~~~~~~~~~~~~~~~~~~gailfaV 88 (136)
.+.+|||++|....+.+.+.++..+. +...+-... ..+...+++.|++ +...+|+|.
T Consensus 238 ~~~~lvf~~~~~~~~~l~~~L~~~~~-------~~~~~~~~~~~~~r~~~~~~f~~---------------~~~~vlv~T 295 (367)
T 1hv8_A 238 EFYGLVFCKTKRDTKELASMLRDIGF-------KAGAIHGDLSQSQREKVIRLFKQ---------------KKIRILIAT 295 (367)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHTTC-------CEEEECSSSCHHHHHHHHHHHHT---------------TSSSEEEEC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhcCC-------CeEEeeCCCCHHHHHHHHHHHHc---------------CCCeEEEEC
Confidence 35689999999999999999987542 223333332 3467788888864 346788887
Q ss_pred ecCccccccccCCCcceEEEEEcCCC
Q psy877 89 FRGKISEGIDFADNYARSVISVGIPF 114 (136)
Q Consensus 89 ~~Gk~SEGIDf~d~~~r~ViivGiPy 114 (136)
..+++|+|+++ ++.||..+.|.
T Consensus 296 --~~~~~Gid~~~--~~~Vi~~~~~~ 317 (367)
T 1hv8_A 296 --DVMSRGIDVND--LNCVINYHLPQ 317 (367)
T ss_dssp --TTHHHHCCCSC--CSEEEESSCCS
T ss_pred --ChhhcCCCccc--CCEEEEecCCC
Confidence 89999999998 78999998876
No 12
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=97.24 E-value=0.0021 Score=51.02 Aligned_cols=79 Identities=11% Similarity=0.027 Sum_probs=60.3
Q ss_pred cCcEEEEecCHHHHHHHHHHHhcCCcchhhccceeEEEcC--------C-CchhHHHHHHHHHHHHhhhhhhcCCccCCC
Q psy877 10 IRGSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEP--------R-RNDELENVMLGYFTAIKQAELRSSNTSEKN 80 (136)
Q Consensus 10 ~gg~lvFFpSY~~m~~~~~~~~~~~~~~~l~~~k~if~E~--------~-~~~~~~~~l~~f~~~~~~~~~~~~~~~~~~ 80 (136)
.+.+|||+++-..++.+.+.+...++ ....+-+ . ...+.+.++++|.+ +
T Consensus 361 ~~k~lVF~~~~~~~~~l~~~L~~~~~-------~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~---------------~ 418 (494)
T 1wp9_A 361 NSKIIVFTNYRETAKKIVNELVKDGI-------KAKRFVGQASKENDRGLSQREQKLILDEFAR---------------G 418 (494)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTC-------CEEEECCSSCC-------CCHHHHHHHHHHH---------------T
T ss_pred CCeEEEEEccHHHHHHHHHHHHHcCC-------CcEEEeccccccccccCCHHHHHHHHHHHhc---------------C
Confidence 34699999999999999999987643 2334433 2 23467889999985 2
Q ss_pred CCeEEEEeecCccccccccCCCcceEEEEEcCCC
Q psy877 81 TGALLFTIFRGKISEGIDFADNYARSVISVGIPF 114 (136)
Q Consensus 81 ~gailfaV~~Gk~SEGIDf~d~~~r~ViivGiPy 114 (136)
.-.||+|. ..++||||+++ ++.||..+.|.
T Consensus 419 ~~~vLv~T--~~~~~Gldl~~--~~~Vi~~d~~~ 448 (494)
T 1wp9_A 419 EFNVLVAT--SVGEEGLDVPE--VDLVVFYEPVP 448 (494)
T ss_dssp SCSEEEEC--GGGGGGGGSTT--CCEEEESSCCH
T ss_pred CceEEEEC--CccccCCCchh--CCEEEEeCCCC
Confidence 35688887 88999999998 79999998875
No 13
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=97.16 E-value=0.0015 Score=53.30 Aligned_cols=81 Identities=16% Similarity=0.197 Sum_probs=61.3
Q ss_pred cccCcEEEEecCHHHHHHHHHHHhcCCcchhhccceeEEEcCCC-chhHHHHHHHHHHHHhhhhhhcCCccCCCCCeEEE
Q psy877 8 WLIRGSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEPRR-NDELENVMLGYFTAIKQAELRSSNTSEKNTGALLF 86 (136)
Q Consensus 8 ~~~gg~lvFFpSY~~m~~~~~~~~~~~~~~~l~~~k~if~E~~~-~~~~~~~l~~f~~~~~~~~~~~~~~~~~~~gailf 86 (136)
...+++|||+++-...+.+.+.+...++ .-..+-... ..+.+.++++|++ +...||+
T Consensus 298 ~~~~~~lVF~~t~~~a~~l~~~L~~~~~-------~~~~lhg~~~~~~R~~~l~~F~~---------------g~~~vLv 355 (434)
T 2db3_A 298 EQADGTIVFVETKRGADFLASFLSEKEF-------PTTSIHGDRLQSQREQALRDFKN---------------GSMKVLI 355 (434)
T ss_dssp HCCTTEEEECSSHHHHHHHHHHHHHTTC-------CEEEESTTSCHHHHHHHHHHHHT---------------SSCSEEE
T ss_pred hCCCCEEEEEeCcHHHHHHHHHHHhCCC-------CEEEEeCCCCHHHHHHHHHHHHc---------------CCCcEEE
Confidence 3445699999999999999999987543 223333332 3467889999974 3467888
Q ss_pred EeecCccccccccCCCcceEEEEEcCCC
Q psy877 87 TIFRGKISEGIDFADNYARSVISVGIPF 114 (136)
Q Consensus 87 aV~~Gk~SEGIDf~d~~~r~ViivGiPy 114 (136)
|. ..+++|||+++ ++.||..++|.
T Consensus 356 aT--~v~~rGlDi~~--v~~VI~~d~p~ 379 (434)
T 2db3_A 356 AT--SVASRGLDIKN--IKHVINYDMPS 379 (434)
T ss_dssp EC--GGGTSSCCCTT--CCEEEESSCCS
T ss_pred Ec--hhhhCCCCccc--CCEEEEECCCC
Confidence 77 89999999998 78899988885
No 14
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=97.10 E-value=0.0026 Score=50.16 Aligned_cols=80 Identities=15% Similarity=0.174 Sum_probs=60.5
Q ss_pred CcEEEEecCHHHHHHHHHHHhcCCcchhhccceeEEEcCCC-chhHHHHHHHHHHHHhhhhhhcCCccCCCCCeEEEEee
Q psy877 11 RGSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEPRR-NDELENVMLGYFTAIKQAELRSSNTSEKNTGALLFTIF 89 (136)
Q Consensus 11 gg~lvFFpSY~~m~~~~~~~~~~~~~~~l~~~k~if~E~~~-~~~~~~~l~~f~~~~~~~~~~~~~~~~~~~gailfaV~ 89 (136)
+.+|||++|-...+.+++.+...+. .-.++-... ..+...+++.|++ +.-.+|+|.
T Consensus 267 ~~~lvf~~~~~~~~~l~~~L~~~~~-------~~~~~~~~~~~~~r~~~~~~f~~---------------g~~~vlv~T- 323 (412)
T 3fht_A 267 AQAMIFCHTRKTASWLAAELSKEGH-------QVALLSGEMMVEQRAAVIERFRE---------------GKEKVLVTT- 323 (412)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHTTC-------CCEEECTTSCHHHHHHHHHHHHT---------------TSCSEEEEC-
T ss_pred CCEEEEeCCHHHHHHHHHHHHhCCC-------eEEEecCCCCHHHHHHHHHHHHC---------------CCCcEEEEc-
Confidence 4599999999999999999987542 223333332 3467888998874 345688777
Q ss_pred cCccccccccCCCcceEEEEEcCCCCC
Q psy877 90 RGKISEGIDFADNYARSVISVGIPFPS 116 (136)
Q Consensus 90 ~Gk~SEGIDf~d~~~r~ViivGiPyp~ 116 (136)
..+++|||+++ ++.||..++|.-+
T Consensus 324 -~~~~~Gidip~--~~~Vi~~~~p~~~ 347 (412)
T 3fht_A 324 -NVCARGIDVEQ--VSVVINFDLPVDK 347 (412)
T ss_dssp -GGGTSSCCCTT--EEEEEESSCCBCS
T ss_pred -CccccCCCccC--CCEEEEECCCCCC
Confidence 89999999997 7889999988643
No 15
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=97.08 E-value=0.0032 Score=46.80 Aligned_cols=79 Identities=13% Similarity=0.087 Sum_probs=58.5
Q ss_pred cCcEEEEecCHHHHHHHHHHHhcCCcchhhccceeEEEcCCC-chhHHHHHHHHHHHHhhhhhhcCCccCCCCCeEEEEe
Q psy877 10 IRGSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEPRR-NDELENVMLGYFTAIKQAELRSSNTSEKNTGALLFTI 88 (136)
Q Consensus 10 ~gg~lvFFpSY~~m~~~~~~~~~~~~~~~l~~~k~if~E~~~-~~~~~~~l~~f~~~~~~~~~~~~~~~~~~~gailfaV 88 (136)
++.+|||+++-...+.+.+.+...++ .-..+-... ..+.+.+++.|+. +.-.||+|.
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~~~-------~~~~lhg~~~~~~r~~~~~~f~~---------------g~~~vlvaT 88 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRLGH-------PAQALHGDLSQGERERVLGAFRQ---------------GEVRVLVAT 88 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHHTC-------CEEEECSSSCHHHHHHHHHHHHS---------------SSCCEEEEC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCC-------CEEEEECCCCHHHHHHHHHHHHC---------------CCCeEEEec
Confidence 35699999999999999999876432 222332222 3467888888874 345678777
Q ss_pred ecCccccccccCCCcceEEEEEcCCC
Q psy877 89 FRGKISEGIDFADNYARSVISVGIPF 114 (136)
Q Consensus 89 ~~Gk~SEGIDf~d~~~r~ViivGiPy 114 (136)
..+++|||+++ ++.||..++|.
T Consensus 89 --~~~~~Gidi~~--v~~Vi~~~~p~ 110 (212)
T 3eaq_A 89 --DVAARGLDIPQ--VDLVVHYRLPD 110 (212)
T ss_dssp --TTTTCSSSCCC--BSEEEESSCCS
T ss_pred --ChhhcCCCCcc--CcEEEECCCCc
Confidence 99999999986 78899999876
No 16
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=97.07 E-value=0.0024 Score=46.54 Aligned_cols=78 Identities=14% Similarity=0.224 Sum_probs=49.4
Q ss_pred CcEEEEecCHHHHHHHHHHHhcCCcchhhccceeEEEcCC-CchhHHHHHHHHHHHHhhhhhhcCCccCCCCCeEEEEee
Q psy877 11 RGSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEPR-RNDELENVMLGYFTAIKQAELRSSNTSEKNTGALLFTIF 89 (136)
Q Consensus 11 gg~lvFFpSY~~m~~~~~~~~~~~~~~~l~~~k~if~E~~-~~~~~~~~l~~f~~~~~~~~~~~~~~~~~~~gailfaV~ 89 (136)
+-+|||+++-...+.+.+.+...++ .-..+-+. +..+.+.++++|++ +.-.+|+|.
T Consensus 47 ~k~lVF~~~~~~~~~l~~~L~~~g~-------~~~~lhg~~~~~~r~~~~~~f~~---------------g~~~vLvaT- 103 (185)
T 2jgn_A 47 SLTLVFVETKKGADSLEDFLYHEGY-------ACTSIHGDRSQRDREEALHQFRS---------------GKSPILVAT- 103 (185)
T ss_dssp SCEEEEESCHHHHHHHHHHHHHTTC-------CEEEEC--------CHHHHHHHH---------------TSSSEEEEE-
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCC-------ceEEEeCCCCHHHHHHHHHHHHc---------------CCCeEEEEc-
Confidence 3499999999999999999987543 22233222 22456778999875 245688877
Q ss_pred cCccccccccCCCcceEEEEEcCCC
Q psy877 90 RGKISEGIDFADNYARSVISVGIPF 114 (136)
Q Consensus 90 ~Gk~SEGIDf~d~~~r~ViivGiPy 114 (136)
..+++|+|+++ +..||..+.|.
T Consensus 104 -~~~~~Gldi~~--~~~VI~~d~p~ 125 (185)
T 2jgn_A 104 -AVAARGLDISN--VKHVINFDLPS 125 (185)
T ss_dssp -C------CCCS--BSEEEESSCCS
T ss_pred -ChhhcCCCccc--CCEEEEeCCCC
Confidence 89999999987 77899988775
No 17
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=97.05 E-value=0.0026 Score=50.46 Aligned_cols=77 Identities=16% Similarity=0.249 Sum_probs=59.1
Q ss_pred cEEEEecCHHHHHHHHHHHhcCCcchhhccceeEEEcCCC-chhHHHHHHHHHHHHhhhhhhcCCccCCCCCeEEEEeec
Q psy877 12 GSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEPRR-NDELENVMLGYFTAIKQAELRSSNTSEKNTGALLFTIFR 90 (136)
Q Consensus 12 g~lvFFpSY~~m~~~~~~~~~~~~~~~l~~~k~if~E~~~-~~~~~~~l~~f~~~~~~~~~~~~~~~~~~~gailfaV~~ 90 (136)
-+|||+++....+.+.+.+...++ .-..+-... ..+...++++|++ +...+|+|.
T Consensus 278 ~~lVf~~~~~~~~~l~~~L~~~~~-------~~~~~h~~~~~~~r~~~~~~f~~---------------g~~~vlvaT-- 333 (417)
T 2i4i_A 278 LTLVFVETKKGADSLEDFLYHEGY-------ACTSIHGDRSQRDREEALHQFRS---------------GKSPILVAT-- 333 (417)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTTC-------CEEEECTTSCHHHHHHHHHHHHH---------------TSSCEEEEC--
T ss_pred eEEEEECCHHHHHHHHHHHHHCCC-------CeeEecCCCCHHHHHHHHHHHHc---------------CCCCEEEEC--
Confidence 489999999999999999987543 223333332 3467888998874 346788888
Q ss_pred CccccccccCCCcceEEEEEcCCC
Q psy877 91 GKISEGIDFADNYARSVISVGIPF 114 (136)
Q Consensus 91 Gk~SEGIDf~d~~~r~ViivGiPy 114 (136)
..+++|||+++ ++.||..+.|.
T Consensus 334 ~~~~~Gidip~--v~~Vi~~~~p~ 355 (417)
T 2i4i_A 334 AVAARGLDISN--VKHVINFDLPS 355 (417)
T ss_dssp HHHHTTSCCCC--EEEEEESSCCS
T ss_pred ChhhcCCCccc--CCEEEEEcCCC
Confidence 79999999998 78899988875
No 18
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=97.01 E-value=0.0039 Score=52.64 Aligned_cols=82 Identities=10% Similarity=0.175 Sum_probs=60.3
Q ss_pred CcEEEEecCHHHHHHHHHHHhcCCcchhhc-cceeEEEcCCC-chhHHHHHHHHHHHHhhhhhhcCCccCCCCCeEEEEe
Q psy877 11 RGSTARIPNKDSANGCEIRWSSTGLMDRIR-EVKSVYCEPRR-NDELENVMLGYFTAIKQAELRSSNTSEKNTGALLFTI 88 (136)
Q Consensus 11 gg~lvFFpSY~~m~~~~~~~~~~~~~~~l~-~~k~if~E~~~-~~~~~~~l~~f~~~~~~~~~~~~~~~~~~~gailfaV 88 (136)
+.+|||+++....+.+++.+... +. ...-..+-... ..+...++++|++ +.-.||+|.
T Consensus 289 ~~~iVF~~t~~~~~~l~~~L~~~-----~~~~~~v~~~hg~~~~~~R~~~~~~F~~---------------g~~~vLVaT 348 (579)
T 3sqw_A 289 YKAIIFAPTVKFTSFLCSILKNE-----FKKDLPILEFHGKITQNKRTSLVKRFKK---------------DESGILVCT 348 (579)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHH-----HTTTSCEEEESTTSCHHHHHHHHHHHHH---------------CSSEEEEEC
T ss_pred CcEEEECCcHHHHHHHHHHHHHh-----hcCCCcEEEecCCCCHHHHHHHHHHhhc---------------CCCeEEEEc
Confidence 45999999999999999888753 00 01222233332 3467889999975 346788777
Q ss_pred ecCccccccccCCCcceEEEEEcCCCCC
Q psy877 89 FRGKISEGIDFADNYARSVISVGIPFPS 116 (136)
Q Consensus 89 ~~Gk~SEGIDf~d~~~r~ViivGiPyp~ 116 (136)
..+++|||+++ ++.||..++|...
T Consensus 349 --~~~~~GiDip~--v~~VI~~~~p~s~ 372 (579)
T 3sqw_A 349 --DVGARGMDFPN--VHEVLQIGVPSEL 372 (579)
T ss_dssp --GGGTSSCCCTT--CCEEEEESCCSST
T ss_pred --chhhcCCCccc--CCEEEEcCCCCCH
Confidence 89999999998 8999999999743
No 19
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=96.96 E-value=0.0052 Score=48.78 Aligned_cols=78 Identities=12% Similarity=0.161 Sum_probs=59.2
Q ss_pred CcEEEEecCHHHHHHHHHHHhcCCcchhhccceeEEEcCCC-chhHHHHHHHHHHHHhhhhhhcCCccCCCCCeEEEEee
Q psy877 11 RGSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEPRR-NDELENVMLGYFTAIKQAELRSSNTSEKNTGALLFTIF 89 (136)
Q Consensus 11 gg~lvFFpSY~~m~~~~~~~~~~~~~~~l~~~k~if~E~~~-~~~~~~~l~~f~~~~~~~~~~~~~~~~~~~gailfaV~ 89 (136)
+.+|||++|....+.+.+.+...++ .-..+-... ..+.+.+++.|++ +...+|+|.
T Consensus 277 ~~~lVf~~~~~~~~~l~~~L~~~~~-------~~~~~h~~~~~~~r~~~~~~f~~---------------g~~~vlv~T- 333 (410)
T 2j0s_A 277 TQAVIFCNTKRKVDWLTEKMREANF-------TVSSMHGDMPQKERESIMKEFRS---------------GASRVLIST- 333 (410)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHTTC-------CCEEECTTSCHHHHHHHHHHHHH---------------TSSCEEEEC-
T ss_pred CcEEEEEcCHHHHHHHHHHHHhCCC-------ceEEeeCCCCHHHHHHHHHHHHC---------------CCCCEEEEC-
Confidence 4699999999999999999987543 223333332 3467889999975 346688877
Q ss_pred cCccccccccCCCcceEEEEEcCCC
Q psy877 90 RGKISEGIDFADNYARSVISVGIPF 114 (136)
Q Consensus 90 ~Gk~SEGIDf~d~~~r~ViivGiPy 114 (136)
..+++|||+++ ++.||..+.|.
T Consensus 334 -~~~~~Gidi~~--v~~Vi~~~~p~ 355 (410)
T 2j0s_A 334 -DVWARGLDVPQ--VSLIINYDLPN 355 (410)
T ss_dssp -GGGSSSCCCTT--EEEEEESSCCS
T ss_pred -ChhhCcCCccc--CCEEEEECCCC
Confidence 89999999996 68899988775
No 20
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=96.93 E-value=0.0054 Score=51.16 Aligned_cols=82 Identities=10% Similarity=0.184 Sum_probs=59.7
Q ss_pred CcEEEEecCHHHHHHHHHHHhcCCcchhhc-cceeEEEcCC-CchhHHHHHHHHHHHHhhhhhhcCCccCCCCCeEEEEe
Q psy877 11 RGSTARIPNKDSANGCEIRWSSTGLMDRIR-EVKSVYCEPR-RNDELENVMLGYFTAIKQAELRSSNTSEKNTGALLFTI 88 (136)
Q Consensus 11 gg~lvFFpSY~~m~~~~~~~~~~~~~~~l~-~~k~if~E~~-~~~~~~~~l~~f~~~~~~~~~~~~~~~~~~~gailfaV 88 (136)
+.+|||++|....+.+.+.+... +. ...-..+-.. ...+...+++.|++ +.-.||+|.
T Consensus 340 ~~~iVF~~s~~~~~~l~~~L~~~-----~~~~~~v~~~h~~~~~~~R~~~~~~f~~---------------g~~~vLvaT 399 (563)
T 3i5x_A 340 YKAIIFAPTVKFTSFLCSILKNE-----FKKDLPILEFHGKITQNKRTSLVKRFKK---------------DESGILVCT 399 (563)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHH-----HTTTSCEEEESTTSCHHHHHHHHHHHHH---------------CSSEEEEEC
T ss_pred CcEEEEcCcHHHHHHHHHHHHHh-----ccCCceEEEecCCCCHHHHHHHHHHHhc---------------CCCCEEEEc
Confidence 45999999999999999888753 00 0121222222 23467889999975 346788777
Q ss_pred ecCccccccccCCCcceEEEEEcCCCCC
Q psy877 89 FRGKISEGIDFADNYARSVISVGIPFPS 116 (136)
Q Consensus 89 ~~Gk~SEGIDf~d~~~r~ViivGiPyp~ 116 (136)
..+++|||+++ ++.||..++|...
T Consensus 400 --~~~~~GiDip~--v~~VI~~~~p~s~ 423 (563)
T 3i5x_A 400 --DVGARGMDFPN--VHEVLQIGVPSEL 423 (563)
T ss_dssp --GGGTSSCCCTT--CCEEEEESCCSST
T ss_pred --chhhcCCCccc--CCEEEEECCCCch
Confidence 89999999998 8899999998743
No 21
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=95.94 E-value=0.00015 Score=52.07 Aligned_cols=80 Identities=14% Similarity=0.220 Sum_probs=57.1
Q ss_pred CcEEEEecCHHHHHHHHHHHhcCCcchhhccceeEEEcCC-CchhHHHHHHHHHHHHhhhhhhcCCccCCCCCeEEEEee
Q psy877 11 RGSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEPR-RNDELENVMLGYFTAIKQAELRSSNTSEKNTGALLFTIF 89 (136)
Q Consensus 11 gg~lvFFpSY~~m~~~~~~~~~~~~~~~l~~~k~if~E~~-~~~~~~~~l~~f~~~~~~~~~~~~~~~~~~~gailfaV~ 89 (136)
+-+|||+++-...+.+.+.++..++ ...++-+. ...+...++++|++ +.-.+|+|.
T Consensus 31 ~~~iVF~~~~~~~~~l~~~L~~~~~-------~~~~~~g~~~~~~r~~~~~~f~~---------------g~~~vLvaT- 87 (170)
T 2yjt_D 31 TRSIVFVRKRERVHELANWLREAGI-------NNCYLEGEMVQGKRNEAIKRLTE---------------GRVNVLVAT- 87 (170)
Confidence 3489999999999999988876532 11122221 12356778888874 234577777
Q ss_pred cCccccccccCCCcceEEEEEcCCCCC
Q psy877 90 RGKISEGIDFADNYARSVISVGIPFPS 116 (136)
Q Consensus 90 ~Gk~SEGIDf~d~~~r~ViivGiPyp~ 116 (136)
..+++|+|+++ ++.||..++|...
T Consensus 88 -~~~~~Gid~~~--~~~Vi~~~~p~~~ 111 (170)
T 2yjt_D 88 -DVAARGIDIPD--VSHVFNFDMPRSG 111 (170)
Confidence 89999999998 7889999988644
No 22
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=96.75 E-value=0.0069 Score=47.82 Aligned_cols=78 Identities=15% Similarity=0.200 Sum_probs=58.0
Q ss_pred CcEEEEecCHHHHHHHHHHHhcCCcchhhccceeEEEcCCC-chhHHHHHHHHHHHHhhhhhhcCCccCCCCCeEEEEee
Q psy877 11 RGSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEPRR-NDELENVMLGYFTAIKQAELRSSNTSEKNTGALLFTIF 89 (136)
Q Consensus 11 gg~lvFFpSY~~m~~~~~~~~~~~~~~~l~~~k~if~E~~~-~~~~~~~l~~f~~~~~~~~~~~~~~~~~~~gailfaV~ 89 (136)
+.+|||+++...++.+.+.+...++ ...++-... ..+...+++.|++ +...+|+|.
T Consensus 259 ~~~lVf~~~~~~~~~l~~~L~~~~~-------~~~~~~~~~~~~~r~~~~~~f~~---------------g~~~vLv~T- 315 (400)
T 1s2m_A 259 NQAIIFCNSTNRVELLAKKITDLGY-------SCYYSHARMKQQERNKVFHEFRQ---------------GKVRTLVCS- 315 (400)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHHTC-------CEEEECTTSCHHHHHHHHHHHHT---------------TSSSEEEES-
T ss_pred CcEEEEEecHHHHHHHHHHHHhcCC-------CeEEecCCCCHHHHHHHHHHHhc---------------CCCcEEEEc-
Confidence 4599999999999999999886432 223333332 3467788888864 345788887
Q ss_pred cCccccccccCCCcceEEEEEcCCC
Q psy877 90 RGKISEGIDFADNYARSVISVGIPF 114 (136)
Q Consensus 90 ~Gk~SEGIDf~d~~~r~ViivGiPy 114 (136)
..+++|||+++ ++.||..+.|.
T Consensus 316 -~~~~~Gidip~--~~~Vi~~~~p~ 337 (400)
T 1s2m_A 316 -DLLTRGIDIQA--VNVVINFDFPK 337 (400)
T ss_dssp -SCSSSSCCCTT--EEEEEESSCCS
T ss_pred -CccccCCCccC--CCEEEEeCCCC
Confidence 89999999996 67899888775
No 23
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=96.53 E-value=0.0046 Score=47.31 Aligned_cols=75 Identities=12% Similarity=0.131 Sum_probs=55.5
Q ss_pred cCcEEEEecCHHHHHHHHHHHhcCCcchhhccceeEEEcCC-CchhHHHHHHHHHHHHhhhhhhcCCccCCCCCeEEEEe
Q psy877 10 IRGSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEPR-RNDELENVMLGYFTAIKQAELRSSNTSEKNTGALLFTI 88 (136)
Q Consensus 10 ~gg~lvFFpSY~~m~~~~~~~~~~~~~~~l~~~k~if~E~~-~~~~~~~~l~~f~~~~~~~~~~~~~~~~~~~gailfaV 88 (136)
.+.+|||+++-...+.+.+.+.. ...+-.. ...+...++++|++ +...+|+|.
T Consensus 220 ~~~~lvf~~~~~~~~~l~~~l~~-----------~~~~~~~~~~~~r~~~~~~f~~---------------~~~~vlv~T 273 (337)
T 2z0m_A 220 DKGVIVFVRTRNRVAKLVRLFDN-----------AIELRGDLPQSVRNRNIDAFRE---------------GEYDMLITT 273 (337)
T ss_dssp CSSEEEECSCHHHHHHHHTTCTT-----------EEEECTTSCHHHHHHHHHHHHT---------------TSCSEEEEC
T ss_pred CCcEEEEEcCHHHHHHHHHHhhh-----------hhhhcCCCCHHHHHHHHHHHHc---------------CCCcEEEEc
Confidence 35699999999999988877652 1222222 23467788888864 346788887
Q ss_pred ecCccccccccCCCcceEEEEEcCCC
Q psy877 89 FRGKISEGIDFADNYARSVISVGIPF 114 (136)
Q Consensus 89 ~~Gk~SEGIDf~d~~~r~ViivGiPy 114 (136)
..+++|||+++ ++.||..+.|.
T Consensus 274 --~~~~~Gid~~~--~~~Vi~~~~~~ 295 (337)
T 2z0m_A 274 --DVASRGLDIPL--VEKVINFDAPQ 295 (337)
T ss_dssp --HHHHTTCCCCC--BSEEEESSCCS
T ss_pred --CccccCCCccC--CCEEEEecCCC
Confidence 89999999986 78999988876
No 24
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=96.53 E-value=0.0032 Score=49.77 Aligned_cols=79 Identities=14% Similarity=0.189 Sum_probs=53.1
Q ss_pred CcEEEEecCHHHHHHHHHHHhcCCcchhhccceeEEEcCCC-chhHHHHHHHHHHHHhhhhhhcCCccCCCCCeEEEEee
Q psy877 11 RGSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEPRR-NDELENVMLGYFTAIKQAELRSSNTSEKNTGALLFTIF 89 (136)
Q Consensus 11 gg~lvFFpSY~~m~~~~~~~~~~~~~~~l~~~k~if~E~~~-~~~~~~~l~~f~~~~~~~~~~~~~~~~~~~gailfaV~ 89 (136)
+.+|||+++....+.+.+.+...++ ...++-... ..+...+++.|++ +...+|+|.
T Consensus 281 ~~~lvf~~~~~~~~~l~~~l~~~~~-------~~~~~h~~~~~~~r~~~~~~f~~---------------g~~~vlv~T- 337 (414)
T 3eiq_A 281 TQAVIFINTRRKVDWLTEKMHARDF-------TVSAMHGDMDQKERDVIMREFRS---------------GSSRVLITT- 337 (414)
T ss_dssp SSCEEECSCHHHHHHHHHHHHTTTC-------CCEEC---CHHHHHHHHHHHHSC---------------C---CEEEC-
T ss_pred CcEEEEeCCHHHHHHHHHHHHhcCC-------eEEEecCCCCHHHHHHHHHHHHc---------------CCCcEEEEC-
Confidence 4599999999999999999987543 222222222 2356778888853 235677777
Q ss_pred cCccccccccCCCcceEEEEEcCCCC
Q psy877 90 RGKISEGIDFADNYARSVISVGIPFP 115 (136)
Q Consensus 90 ~Gk~SEGIDf~d~~~r~ViivGiPyp 115 (136)
..+++|||+++ ++.||..+.|..
T Consensus 338 -~~~~~Gidip~--v~~Vi~~~~p~s 360 (414)
T 3eiq_A 338 -DLLARGIDVQQ--VSLVINYDLPTN 360 (414)
T ss_dssp -SSCC--CCGGG--CSCEEESSCCSS
T ss_pred -CccccCCCccC--CCEEEEeCCCCC
Confidence 89999999986 677999888763
No 25
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=96.50 E-value=0.024 Score=44.75 Aligned_cols=80 Identities=14% Similarity=0.089 Sum_probs=59.7
Q ss_pred cCcEEEEecCHHHHHHHHHHHhcCCcchhhccceeEEEcCCC-chhHHHHHHHHHHHHhhhhhhcCCccCCCCCeEEEEe
Q psy877 10 IRGSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEPRR-NDELENVMLGYFTAIKQAELRSSNTSEKNTGALLFTI 88 (136)
Q Consensus 10 ~gg~lvFFpSY~~m~~~~~~~~~~~~~~~l~~~k~if~E~~~-~~~~~~~l~~f~~~~~~~~~~~~~~~~~~~gailfaV 88 (136)
++.+|||+++-...+.+.+.+...++ .-..+=... ..+.+.+++.|+. +.-.||+|.
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~g~-------~~~~lhg~l~~~~r~~~~~~f~~---------------g~~~vLVaT 85 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRLGH-------PAQALHGDMSQGERERVMGAFRQ---------------GEVRVLVAT 85 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTTTC-------CEEEECSCCCTHHHHHHHHHHHH---------------TSCCEEEEC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCCC-------CEEEEeCCCCHHHHHHHHHHhhc---------------CCceEEEEe
Confidence 45699999999999999999986543 222222222 3467889999875 345677777
Q ss_pred ecCccccccccCCCcceEEEEEcCCCC
Q psy877 89 FRGKISEGIDFADNYARSVISVGIPFP 115 (136)
Q Consensus 89 ~~Gk~SEGIDf~d~~~r~ViivGiPyp 115 (136)
..+++|||+++ ++.||..++|..
T Consensus 86 --~va~~Gidi~~--v~~VI~~d~p~s 108 (300)
T 3i32_A 86 --DVAARGLDIPQ--VDLVVHYRMPDR 108 (300)
T ss_dssp --STTTCSTTCCC--CSEEEESSCCSS
T ss_pred --chhhcCccccc--eeEEEEcCCCCC
Confidence 89999999986 678999998863
No 26
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=96.40 E-value=0.014 Score=49.13 Aligned_cols=78 Identities=14% Similarity=0.207 Sum_probs=59.0
Q ss_pred CcEEEEecCHHHHHHHHHHHhcCCcchhhccceeEEEcCC-CchhHHHHHHHHHHHHhhhhhhcCCccCCCCCeEEEEee
Q psy877 11 RGSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEPR-RNDELENVMLGYFTAIKQAELRSSNTSEKNTGALLFTIF 89 (136)
Q Consensus 11 gg~lvFFpSY~~m~~~~~~~~~~~~~~~l~~~k~if~E~~-~~~~~~~~l~~f~~~~~~~~~~~~~~~~~~~gailfaV~ 89 (136)
+.+|||++|-...+.+.+.+...++ .-...=.. +..+...+++.|+. +...|++|.
T Consensus 237 ~~~IVf~~sr~~~e~l~~~L~~~g~-------~~~~~h~~l~~~~R~~~~~~f~~---------------g~~~vlVaT- 293 (523)
T 1oyw_A 237 KSGIIYCNSRAKVEDTAARLQSKGI-------SAAAYHAGLENNVRADVQEKFQR---------------DDLQIVVAT- 293 (523)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHTTC-------CEEEECTTSCHHHHHHHHHHHHT---------------TSCSEEEEC-
T ss_pred CcEEEEeCCHHHHHHHHHHHHHCCC-------CEEEecCCCCHHHHHHHHHHHHc---------------CCCeEEEEe-
Confidence 3589999999999999999987543 11222222 23467888888874 346677777
Q ss_pred cCccccccccCCCcceEEEEEcCCC
Q psy877 90 RGKISEGIDFADNYARSVISVGIPF 114 (136)
Q Consensus 90 ~Gk~SEGIDf~d~~~r~ViivGiPy 114 (136)
-.+++|||+++ ++.||..++|.
T Consensus 294 -~a~~~GiD~p~--v~~VI~~~~p~ 315 (523)
T 1oyw_A 294 -VAFGMGINKPN--VRFVVHFDIPR 315 (523)
T ss_dssp -TTSCTTTCCTT--CCEEEESSCCS
T ss_pred -chhhCCCCccC--ccEEEEECCCC
Confidence 89999999998 89999999886
No 27
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=96.21 E-value=0.0099 Score=47.55 Aligned_cols=77 Identities=16% Similarity=0.148 Sum_probs=54.3
Q ss_pred ccCcEEEEecCHHHHHHHHHHHhcCCcchhhccceeEEEcCCCchhHHHHHHHHHHHHhhhhhhcCCccCCCCCeEEEE-
Q psy877 9 LIRGSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEPRRNDELENVMLGYFTAIKQAELRSSNTSEKNTGALLFT- 87 (136)
Q Consensus 9 ~~gg~lvFFpSY~~m~~~~~~~~~~~~~~~l~~~k~if~E~~~~~~~~~~l~~f~~~~~~~~~~~~~~~~~~~gailfa- 87 (136)
.++.+|||+++-...+.+.+.+...++-.. ..+- ..+ .. ++.|++ +.-.+|+|
T Consensus 251 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~------~~~h---~~~-r~-~~~f~~---------------g~~~vLvat 304 (414)
T 3oiy_A 251 FRDGILIFAQTEEEGKELYEYLKRFKFNVG------ETWS---EFE-KN-FEDFKV---------------GKINILIGV 304 (414)
T ss_dssp HCSSEEEEESSHHHHHHHHHHHHHTTCCEE------ESSS---CHH-HH-HHHHHT---------------TSCSEEEEE
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHcCCcee------hhhc---Ccc-hH-HHHHhC---------------CCCeEEEEe
Confidence 446799999999999999999987543110 0111 122 23 777764 34578887
Q ss_pred ---eecCccccccccCCCcceEEEEEcCCC
Q psy877 88 ---IFRGKISEGIDFADNYARSVISVGIPF 114 (136)
Q Consensus 88 ---V~~Gk~SEGIDf~d~~~r~ViivGiPy 114 (136)
. ..+++|||+++ .++.||..++|.
T Consensus 305 ~s~T--~~~~~GiDip~-~v~~VI~~~~p~ 331 (414)
T 3oiy_A 305 QAYY--GKLTRGVDLPE-RIKYVIFWGTPS 331 (414)
T ss_dssp CCTT--CCCCCCCCCTT-TCCEEEEESCCT
T ss_pred cCcC--chhhccCcccc-ccCEEEEECCCC
Confidence 5 88999999987 257799999993
No 28
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=96.14 E-value=0.023 Score=48.77 Aligned_cols=78 Identities=13% Similarity=0.144 Sum_probs=59.6
Q ss_pred CcEEEEecCHHHHHHHHHHHhcCCcchhhccceeEEEcCC-CchhHHHHHHHHHHHHhhhhhhcCCccCCCCCeEEEEee
Q psy877 11 RGSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEPR-RNDELENVMLGYFTAIKQAELRSSNTSEKNTGALLFTIF 89 (136)
Q Consensus 11 gg~lvFFpSY~~m~~~~~~~~~~~~~~~l~~~k~if~E~~-~~~~~~~~l~~f~~~~~~~~~~~~~~~~~~~gailfaV~ 89 (136)
+.+|||++|....+.+.+.+...++ .-...=.. +..+...+++.|.. +...|++|.
T Consensus 268 ~~~IVf~~sr~~~e~la~~L~~~g~-------~~~~~h~~l~~~~R~~~~~~F~~---------------g~~~VlVAT- 324 (591)
T 2v1x_A 268 QSGIIYCFSQKDSEQVTVSLQNLGI-------HAGAYHANLEPEDKTTVHRKWSA---------------NEIQVVVAT- 324 (591)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTC-------CEEEECTTSCHHHHHHHHHHHHT---------------TSSSEEEEC-
T ss_pred CCeEEEeCcHHHHHHHHHHHHHCCC-------CEEEecCCCCHHHHHHHHHHHHc---------------CCCeEEEEe-
Confidence 4589999999999999999987543 22222222 23467888888874 346788777
Q ss_pred cCccccccccCCCcceEEEEEcCCC
Q psy877 90 RGKISEGIDFADNYARSVISVGIPF 114 (136)
Q Consensus 90 ~Gk~SEGIDf~d~~~r~ViivGiPy 114 (136)
..+++|||+++ ++.||..++|.
T Consensus 325 -~a~~~GID~p~--V~~VI~~~~p~ 346 (591)
T 2v1x_A 325 -VAFGMGIDKPD--VRFVIHHSMSK 346 (591)
T ss_dssp -TTSCTTCCCSC--EEEEEESSCCS
T ss_pred -chhhcCCCccc--ccEEEEeCCCC
Confidence 89999999998 89999999986
No 29
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=95.93 E-value=0.0013 Score=51.72 Aligned_cols=80 Identities=11% Similarity=0.190 Sum_probs=0.0
Q ss_pred CcEEEEecCHHHHHHHHHHHhcCCcchhhccceeEEEcCC-CchhHHHHHHHHHHHHhhhhhhcCCccCCCCCeEEEEee
Q psy877 11 RGSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEPR-RNDELENVMLGYFTAIKQAELRSSNTSEKNTGALLFTIF 89 (136)
Q Consensus 11 gg~lvFFpSY~~m~~~~~~~~~~~~~~~l~~~k~if~E~~-~~~~~~~~l~~f~~~~~~~~~~~~~~~~~~~gailfaV~ 89 (136)
+.+|||++|...++.+.+.++..++ .-..+-.. ...+...+++.|++ +...+|+|.
T Consensus 260 ~~~lVf~~~~~~~~~l~~~L~~~~~-------~~~~~~~~~~~~~r~~~~~~f~~---------------~~~~vlv~T- 316 (394)
T 1fuu_A 260 TQAVIFCNTRRKVEELTTKLRNDKF-------TVSAIYSDLPQQERDTIMKEFRS---------------GSSRILIST- 316 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcEEEEECCHHHHHHHHHHHHHcCC-------eEEEeeCCCCHHHHHHHHHHHHC---------------CCCcEEEEC-
Confidence 4589999999999999988876432 11111111 12355778888864 234677776
Q ss_pred cCccccccccCCCcceEEEEEcCCCCC
Q psy877 90 RGKISEGIDFADNYARSVISVGIPFPS 116 (136)
Q Consensus 90 ~Gk~SEGIDf~d~~~r~ViivGiPyp~ 116 (136)
..+++|+|+++ ++.||..+.|...
T Consensus 317 -~~~~~Gldi~~--~~~Vi~~~~p~s~ 340 (394)
T 1fuu_A 317 -DLLARGIDVQQ--VSLVINYDLPANK 340 (394)
T ss_dssp ---------------------------
T ss_pred -ChhhcCCCccc--CCEEEEeCCCCCH
Confidence 89999999996 6788998988643
No 30
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=95.71 E-value=0.015 Score=49.73 Aligned_cols=85 Identities=18% Similarity=0.136 Sum_probs=57.3
Q ss_pred cCcEEEEecCHHHHHHHHHHHhcCCcchhhccceeEEEcCC---------CchhHHHHHHHHHHHHhhhhhhcCCccCCC
Q psy877 10 IRGSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEPR---------RNDELENVMLGYFTAIKQAELRSSNTSEKN 80 (136)
Q Consensus 10 ~gg~lvFFpSY~~m~~~~~~~~~~~~~~~l~~~k~if~E~~---------~~~~~~~~l~~f~~~~~~~~~~~~~~~~~~ 80 (136)
.+.+|||+++-...+.+.+.+.....+... ..+..++-.. +..+...++++|++ +
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~-g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~---------------g 463 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEV-GVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRT---------------G 463 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC------CEECCCSCCCTTCCCCCHHHHHHHHHHHCC----------------
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCcccccc-CcceEEEECCCCccCCCCCCHHHHHHHHHHHhc---------------C
Confidence 356999999999999999998864111000 0122233222 23467888888864 2
Q ss_pred CCeEEEEeecCccccccccCCCcceEEEEEcCCC
Q psy877 81 TGALLFTIFRGKISEGIDFADNYARSVISVGIPF 114 (136)
Q Consensus 81 ~gailfaV~~Gk~SEGIDf~d~~~r~ViivGiPy 114 (136)
.-.||+|. -.++||||++ .++.||..++|.
T Consensus 464 ~~~VLVaT--~~~~~GIDip--~v~~VI~~d~p~ 493 (699)
T 4gl2_A 464 KINLLIAT--TVAEEGLDIK--ECNIVIRYGLVT 493 (699)
T ss_dssp --CCSEEE--CSCCTTSCCC--SCCCCEEESCCC
T ss_pred CCcEEEEc--cccccCCccc--cCCEEEEeCCCC
Confidence 35677777 8999999999 488999999885
No 31
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=95.54 E-value=0.041 Score=44.84 Aligned_cols=85 Identities=12% Similarity=0.047 Sum_probs=49.3
Q ss_pred CcEEEEecCHHHHHHHHHHHhcCCcchhhccceeEEEcC---------CCchhHHHHHHHHHHHHhhhhhhcCCccCCCC
Q psy877 11 RGSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEP---------RRNDELENVMLGYFTAIKQAELRSSNTSEKNT 81 (136)
Q Consensus 11 gg~lvFFpSY~~m~~~~~~~~~~~~~~~l~~~k~if~E~---------~~~~~~~~~l~~f~~~~~~~~~~~~~~~~~~~ 81 (136)
+.+|||.++-...+.+.+.+...+....+ +..++-. -+..+...++++|++. +.
T Consensus 390 ~k~lVF~~~~~~~~~l~~~L~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~--------------g~ 452 (555)
T 3tbk_A 390 TKTILFVKTRALVDALKKWIEENPALSFL---KPGILTGRGRTNRATGMTLPAQKCVLEAFRAS--------------GD 452 (555)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHCGGGTTC---CEEECCC----------------------------------------C
T ss_pred ceEEEEeCcHHHHHHHHHHHhhCcCcCce---eeeEEEecCCcccccccCHHHHHHHHHHHhcC--------------CC
Confidence 56999999999999999999875432211 1111110 1123567788888751 12
Q ss_pred CeEEEEeecCccccccccCCCcceEEEEEcCCCCC
Q psy877 82 GALLFTIFRGKISEGIDFADNYARSVISVGIPFPS 116 (136)
Q Consensus 82 gailfaV~~Gk~SEGIDf~d~~~r~ViivGiPyp~ 116 (136)
-.||+|. ..++||||++ .++.||..++|.-+
T Consensus 453 ~~vLvaT--~~~~~GlDlp--~v~~VI~~d~p~s~ 483 (555)
T 3tbk_A 453 NNILIAT--SVADEGIDIA--ECNLVILYEYVGNV 483 (555)
T ss_dssp CSEEEEC--CCTTCCEETT--SCSEEEEESCCSSC
T ss_pred eeEEEEc--chhhcCCccc--cCCEEEEeCCCCCH
Confidence 4677777 8999999999 58999999998744
No 32
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=95.50 E-value=0.036 Score=50.57 Aligned_cols=81 Identities=14% Similarity=0.103 Sum_probs=53.6
Q ss_pred ccccccCcEEEEecCHHHHHHHHHHHhcCCcchhhccceeEEEcCCCchhHHHHHHHHHHHHhhhhhhcCCccCCCCCeE
Q psy877 5 PSCWLIRGSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEPRRNDELENVMLGYFTAIKQAELRSSNTSEKNTGAL 84 (136)
Q Consensus 5 ~~~~~~gg~lvFFpSY~~m~~~~~~~~~~~~~~~l~~~k~if~E~~~~~~~~~~l~~f~~~~~~~~~~~~~~~~~~~gai 84 (136)
+....++.+|||+++-...+.+.+.+... + +-.++-. +.+.++++|++ +...|
T Consensus 270 ll~~~~~~~LVF~~t~~~a~~l~~~L~~~-~-------~v~~lhg----~~~~~l~~F~~---------------G~~~V 322 (1054)
T 1gku_B 270 ILEKLGTGGIIYARTGEEAEEIYESLKNK-F-------RIGIVTA----TKKGDYEKFVE---------------GEIDH 322 (1054)
T ss_dssp HHTTSCSCEEEEESSHHHHHHHHHTTTTS-S-------CEEECTT----SSSHHHHHHHH---------------TSCSE
T ss_pred HHhhcCCCEEEEEcCHHHHHHHHHHHhhc-c-------CeeEEec----cHHHHHHHHHc---------------CCCcE
Confidence 34444678999999999999999888754 1 1122221 22578888875 34678
Q ss_pred EEEee--cCccccccccCCCcceEEEEEcCC
Q psy877 85 LFTIF--RGKISEGIDFADNYARSVISVGIP 113 (136)
Q Consensus 85 lfaV~--~Gk~SEGIDf~d~~~r~ViivGiP 113 (136)
|+|+. -..+++|||+++- .+.||..|+|
T Consensus 323 LVaTas~Tdv~~rGIDip~V-I~~VI~~~~P 352 (1054)
T 1gku_B 323 LIGTAHYYGTLVRGLDLPER-IRFAVFVGCP 352 (1054)
T ss_dssp EEEECC------CCSCCTTT-CCEEEEESCC
T ss_pred EEEecCCCCeeEeccccCCc-ccEEEEeCCC
Confidence 88742 3789999999972 2779999999
No 33
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=95.36 E-value=0.11 Score=45.19 Aligned_cols=77 Identities=14% Similarity=0.125 Sum_probs=57.5
Q ss_pred cEEEEecCHHHHHHHHHHHhcCCcchhhccceeEEEcCC-CchhHHHHHHHHHHHHhhhhhhcCCccCCCCCeEEEEeec
Q psy877 12 GSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEPR-RNDELENVMLGYFTAIKQAELRSSNTSEKNTGALLFTIFR 90 (136)
Q Consensus 12 g~lvFFpSY~~m~~~~~~~~~~~~~~~l~~~k~if~E~~-~~~~~~~~l~~f~~~~~~~~~~~~~~~~~~~gailfaV~~ 90 (136)
-+|||++|-...+.+.+.+...++ +..++-.. +..+...++++|+. +.-.||+|.
T Consensus 447 ~vlVf~~t~~~ae~L~~~L~~~gi-------~~~~lh~~~~~~~R~~~l~~f~~---------------g~~~VLVaT-- 502 (661)
T 2d7d_A 447 RVLVTTLTKKMSEDLTDYLKEIGI-------KVNYLHSEIKTLERIEIIRDLRL---------------GKYDVLVGI-- 502 (661)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTTC-------CEEEECTTCCHHHHHHHHHHHHH---------------TSCSEEEES--
T ss_pred eEEEEECCHHHHHHHHHHHHhcCC-------CeEEEeCCCCHHHHHHHHHHHhc---------------CCeEEEEec--
Confidence 489999999999999999987653 22223322 23467888888874 235677766
Q ss_pred CccccccccCCCcceEEEEEcCCC
Q psy877 91 GKISEGIDFADNYARSVISVGIPF 114 (136)
Q Consensus 91 Gk~SEGIDf~d~~~r~ViivGiPy 114 (136)
..+++|+|+++ ++.||+.+.+.
T Consensus 503 ~~l~~GlDip~--v~lVi~~d~d~ 524 (661)
T 2d7d_A 503 NLLREGLDIPE--VSLVAILDADK 524 (661)
T ss_dssp CCCSTTCCCTT--EEEEEETTTTC
T ss_pred chhhCCcccCC--CCEEEEeCccc
Confidence 78999999996 89999999853
No 34
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=95.30 E-value=0.042 Score=44.97 Aligned_cols=83 Identities=13% Similarity=0.085 Sum_probs=36.8
Q ss_pred CcEEEEecCHHHHHHHHHHHhcCCcchhhccceeEEEcC---------CCchhHHHHHHHHHHHHhhhhhhcCCccCCCC
Q psy877 11 RGSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEP---------RRNDELENVMLGYFTAIKQAELRSSNTSEKNT 81 (136)
Q Consensus 11 gg~lvFFpSY~~m~~~~~~~~~~~~~~~l~~~k~if~E~---------~~~~~~~~~l~~f~~~~~~~~~~~~~~~~~~~ 81 (136)
.-+|||.++-...+.+.+.+........+ +..++-. -...+...++++|++. +.
T Consensus 391 ~k~lVF~~~~~~~~~l~~~L~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~--------------g~ 453 (556)
T 4a2p_A 391 TRTLLFAKTRALVSALKKCMEENPILNYI---KPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTS--------------KD 453 (556)
T ss_dssp CCEEEEESSHHHHHHHHHHHTTCSGGGSC---CEEC--------------------------------------------
T ss_pred ceEEEEEccHHHHHHHHHHHHhCCCccee---eeeEEEccCCcccccccCHHHHHHHHHHhccc--------------Cc
Confidence 45999999999999999999765211111 1111100 1123567788888751 12
Q ss_pred CeEEEEeecCccccccccCCCcceEEEEEcCCC
Q psy877 82 GALLFTIFRGKISEGIDFADNYARSVISVGIPF 114 (136)
Q Consensus 82 gailfaV~~Gk~SEGIDf~d~~~r~ViivGiPy 114 (136)
-.||+|. --++||||+++ +..||....|.
T Consensus 454 ~~vLvaT--~~~~~GiDip~--v~~VI~~d~p~ 482 (556)
T 4a2p_A 454 NRLLIAT--SVADEGIDIVQ--CNLVVLYEYSG 482 (556)
T ss_dssp CCEEEEE--C-------------CEEEEETCCS
T ss_pred eEEEEEc--CchhcCCCchh--CCEEEEeCCCC
Confidence 4588777 88999999997 89999999875
No 35
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=95.03 E-value=0.051 Score=46.91 Aligned_cols=75 Identities=12% Similarity=0.063 Sum_probs=56.1
Q ss_pred cCcEEEEecCHHHHHHHHHHHhcCCcchhhccceeEEEcCCCchhHHHHHHHHHHHHhhhhhhcCCccCCCCCeEEEEee
Q psy877 10 IRGSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEPRRNDELENVMLGYFTAIKQAELRSSNTSEKNTGALLFTIF 89 (136)
Q Consensus 10 ~gg~lvFFpSY~~m~~~~~~~~~~~~~~~l~~~k~if~E~~~~~~~~~~l~~f~~~~~~~~~~~~~~~~~~~gailfaV~ 89 (136)
.+.+|||++|-...+.+.+.+...++ +-..+-+ .+.+.++++|++ +.-.||+|.
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~g~-------~v~~lhg---~~R~~~l~~F~~---------------g~~~VLVaT- 408 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKSGK-------RVIQLSR---KTFDTEYPKTKL---------------TDWDFVVTT- 408 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHTTC-------CEEEECT---TTHHHHTTHHHH---------------SCCSEEEEC-
T ss_pred CCCEEEEECChhHHHHHHHHHHHcCC-------cEEEECh---HHHHHHHHhhcC---------------CCcEEEEEC-
Confidence 46799999999999999999987542 2122222 356778888875 346788877
Q ss_pred cCccccccccCCCcceEEEEEcCCC
Q psy877 90 RGKISEGIDFADNYARSVISVGIPF 114 (136)
Q Consensus 90 ~Gk~SEGIDf~d~~~r~ViivGiPy 114 (136)
--+++|||+ + ++.||..|+++
T Consensus 409 -dv~~rGiDi-~--v~~VId~g~~~ 429 (618)
T 2whx_A 409 -DISEMGANF-R--AGRVIDPRRCL 429 (618)
T ss_dssp -GGGGTTCCC-C--CSEEEECCEEE
T ss_pred -cHHHcCccc-C--ceEEEECccee
Confidence 899999999 3 78998888744
No 36
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=95.03 E-value=0.011 Score=48.78 Aligned_cols=72 Identities=11% Similarity=0.080 Sum_probs=47.6
Q ss_pred cCcEEEEecCHHHHHHHHHHHhcCCcchhhccceeEEEcCCCchhHHHHHHHHHHHHhhhhhhcCCccCCCCCeEEEEee
Q psy877 10 IRGSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEPRRNDELENVMLGYFTAIKQAELRSSNTSEKNTGALLFTIF 89 (136)
Q Consensus 10 ~gg~lvFFpSY~~m~~~~~~~~~~~~~~~l~~~k~if~E~~~~~~~~~~l~~f~~~~~~~~~~~~~~~~~~~gailfaV~ 89 (136)
++.+|||++|....+.+.+.+...++ +-..+-+ .+.+.+++.|++ +.-.||+|.
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~g~-------~v~~lh~---~~R~~~~~~f~~---------------g~~~iLVaT- 243 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRAGK-------KVIQLNR---KSYDTEYPKCKN---------------GDWDFVITT- 243 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTC-------CEEEEST---TCCCCCGGGSSS---------------CCCSEEEES-
T ss_pred CCCEEEEeCChHHHHHHHHHHHhcCC-------cEEecCH---HHHHHHHhhccC---------------CCceEEEEC-
Confidence 46799999999999999999987543 1111211 122345555542 345777777
Q ss_pred cCccccccccCCCcceEEEEEc
Q psy877 90 RGKISEGIDFADNYARSVISVG 111 (136)
Q Consensus 90 ~Gk~SEGIDf~d~~~r~ViivG 111 (136)
-.+++|||+++ +.||-.|
T Consensus 244 -~v~~~GiDip~---~~VI~~G 261 (459)
T 2z83_A 244 -DISEMGANFGA---SRVIDCR 261 (459)
T ss_dssp -SCC---CCCSC---SEEEECC
T ss_pred -ChHHhCeecCC---CEEEECC
Confidence 89999999997 8888877
No 37
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=94.93 E-value=0.04 Score=45.28 Aligned_cols=72 Identities=14% Similarity=0.088 Sum_probs=52.2
Q ss_pred cCcEEEEecCHHHHHHHHHHHhcCCcchhhccceeEEEcCCCchhHHHHHHHHHHHHhhhhhhcCCccCCCCCeEEEEee
Q psy877 10 IRGSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEPRRNDELENVMLGYFTAIKQAELRSSNTSEKNTGALLFTIF 89 (136)
Q Consensus 10 ~gg~lvFFpSY~~m~~~~~~~~~~~~~~~l~~~k~if~E~~~~~~~~~~l~~f~~~~~~~~~~~~~~~~~~~gailfaV~ 89 (136)
.+.+|||++|-...+.+++.++..++ . +..-.. ...+.+++.|++ +.-.+|+|.
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~g~-------~-~~~lh~--~~~~~~~~~f~~---------------g~~~vLVaT- 241 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKSGK-------R-VIQLSR--KTFDTEYPKTKL---------------TDWDFVVTT- 241 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTTTC-------C-EEEECT--TTHHHHGGGGGS---------------SCCSEEEEC-
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHcCC-------e-EEECCH--HHHHHHHHhhcc---------------CCceEEEEC-
Confidence 46799999999999999999987542 1 222122 233567776653 346778777
Q ss_pred cCccccccccCCCcceEEEEEc
Q psy877 90 RGKISEGIDFADNYARSVISVG 111 (136)
Q Consensus 90 ~Gk~SEGIDf~d~~~r~ViivG 111 (136)
..+++|||+++ +.||-.|
T Consensus 242 -~v~~~GiDip~---~~VI~~~ 259 (451)
T 2jlq_A 242 -DISEMGANFRA---GRVIDPR 259 (451)
T ss_dssp -GGGGSSCCCCC---SEEEECC
T ss_pred -CHHHhCcCCCC---CEEEECC
Confidence 89999999998 8888766
No 38
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=94.84 E-value=0.12 Score=43.48 Aligned_cols=88 Identities=9% Similarity=0.051 Sum_probs=55.8
Q ss_pred CcEEEEecCHHHHHHHHHHHhcCCcchhhccce-eEEEcCCCchhHHHHHHHHHHHHhhhhhhcCCccCCCCCeEEEEee
Q psy877 11 RGSTARIPNKDSANGCEIRWSSTGLMDRIREVK-SVYCEPRRNDELENVMLGYFTAIKQAELRSSNTSEKNTGALLFTIF 89 (136)
Q Consensus 11 gg~lvFFpSY~~m~~~~~~~~~~~~~~~l~~~k-~if~E~~~~~~~~~~l~~f~~~~~~~~~~~~~~~~~~~gailfaV~ 89 (136)
+-+|||+.+-...+.+.+.+........-.... -..+-.....+.+.++++|++ +. ..-..|+.|+
T Consensus 440 ~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~~r~~~l~~F~~----~~--------~~~~~ilvtt- 506 (590)
T 3h1t_A 440 AKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQE----LE--------TSTPVILTTS- 506 (590)
T ss_dssp SEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHHC----TT--------CCCCCEEEES-
T ss_pred ccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChHHHHHHHHHHhC----CC--------CCCCEEEEEC-
Confidence 349999999999999999887543210000011 122222222237888888874 10 0113377776
Q ss_pred cCccccccccCCCcceEEEEEcCCC
Q psy877 90 RGKISEGIDFADNYARSVISVGIPF 114 (136)
Q Consensus 90 ~Gk~SEGIDf~d~~~r~ViivGiPy 114 (136)
..+++|||+++ +..||+...|.
T Consensus 507 -~~l~~GiDip~--v~~Vi~~~~~~ 528 (590)
T 3h1t_A 507 -QLLTTGVDAPT--CKNVVLARVVN 528 (590)
T ss_dssp -STTTTTCCCTT--EEEEEEESCCC
T ss_pred -ChhhcCccchh--eeEEEEEecCC
Confidence 89999999987 78888887765
No 39
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=94.71 E-value=0.0054 Score=50.19 Aligned_cols=78 Identities=15% Similarity=0.161 Sum_probs=0.0
Q ss_pred CcEEEEecCHHHHHHHHHHHhcCCcchhhccceeEEEcC-CCchhHHHHHHHHHHHHhhhhhhcCCccCCCCCeEEEEee
Q psy877 11 RGSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEP-RRNDELENVMLGYFTAIKQAELRSSNTSEKNTGALLFTIF 89 (136)
Q Consensus 11 gg~lvFFpSY~~m~~~~~~~~~~~~~~~l~~~k~if~E~-~~~~~~~~~l~~f~~~~~~~~~~~~~~~~~~~gailfaV~ 89 (136)
+.++||++|-...+.+.+.+...+.- -.++-. -+..+...+++.|++ +.-.||+|.
T Consensus 334 ~~~lvF~~s~~~~~~l~~~L~~~~~~-------v~~lh~~~~~~~R~~~~~~f~~---------------g~~~iLv~T- 390 (479)
T 3fmp_B 334 AQAMIFCHTRKTASWLAAELSKEGHQ-------VALLSGEMMVEQRAAVIERFRE---------------GKEKVLVTT- 390 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceEEEeCcHHHHHHHHHHHHhCCcc-------EEEecCCCCHHHHHHHHHHHHc---------------CCCcEEEEc-
Confidence 45899999999999998888764321 111111 112355778888875 235677777
Q ss_pred cCccccccccCCCcceEEEEEcCCC
Q psy877 90 RGKISEGIDFADNYARSVISVGIPF 114 (136)
Q Consensus 90 ~Gk~SEGIDf~d~~~r~ViivGiPy 114 (136)
..+++||||++ ++.||..++|.
T Consensus 391 -~~~~~GlDip~--v~~VI~~d~p~ 412 (479)
T 3fmp_B 391 -NVCARGIDVEQ--VSVVINFDLPV 412 (479)
T ss_dssp -------------------------
T ss_pred -cccccCCcccc--CCEEEEecCCC
Confidence 89999999997 67788888885
No 40
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=94.71 E-value=0.008 Score=50.12 Aligned_cols=78 Identities=21% Similarity=0.288 Sum_probs=46.8
Q ss_pred CcEEEEecCHHHHHHHHHHHhcCCcchhhccceeEEEcCC-CchhHHHHHHHHHHHHhhhhhhcCCccCCCCCeEEEEee
Q psy877 11 RGSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEPR-RNDELENVMLGYFTAIKQAELRSSNTSEKNTGALLFTIF 89 (136)
Q Consensus 11 gg~lvFFpSY~~m~~~~~~~~~~~~~~~l~~~k~if~E~~-~~~~~~~~l~~f~~~~~~~~~~~~~~~~~~~gailfaV~ 89 (136)
+.+|||+++....+.+...+...+. .-..+-.. ...+.+.+++.|++ +...||+|.
T Consensus 358 ~~~LVF~~s~~~a~~l~~~L~~~~~-------~v~~~hg~~~~~~R~~il~~f~~---------------g~~~VLVaT- 414 (508)
T 3fho_A 358 GQSIIFCKKKDTAEEIARRMTADGH-------TVACLTGNLEGAQRDAIMDSFRV---------------GTSKVLVTT- 414 (508)
T ss_dssp CCEEEBCSSTTTTTHHHHHHTTTTC-------CCCEEC-----CTTGGGTHHHHS---------------SSCCCCEEC-
T ss_pred CcEEEEECCHHHHHHHHHHHHhCCC-------cEEEEeCCCCHHHHHHHHHHHHC---------------CCCeEEEeC-
Confidence 5699999999999999998876532 11111111 12345667888853 345688887
Q ss_pred cCccccccccCCCcceEEEEEcCCC
Q psy877 90 RGKISEGIDFADNYARSVISVGIPF 114 (136)
Q Consensus 90 ~Gk~SEGIDf~d~~~r~ViivGiPy 114 (136)
..+++|||+++ ++.||..+.|.
T Consensus 415 -~~l~~GiDip~--v~~VI~~~~p~ 436 (508)
T 3fho_A 415 -NVIARGIDVSQ--VNLVVNYDMPL 436 (508)
T ss_dssp -C-----CCCTT--CCEEEC----C
T ss_pred -ChhhcCCCccC--CCEEEEECCCC
Confidence 89999999998 78899999885
No 41
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=94.57 E-value=0.085 Score=43.28 Aligned_cols=82 Identities=10% Similarity=-0.017 Sum_probs=56.7
Q ss_pred cCcEEEEecCHHHHHHHHHHHhcCCcchhhccceeEEEcCCCc-hhHHHHHHHHHHHHhhhhhhcCCccCCCCCeEEEEe
Q psy877 10 IRGSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEPRRN-DELENVMLGYFTAIKQAELRSSNTSEKNTGALLFTI 88 (136)
Q Consensus 10 ~gg~lvFFpSY~~m~~~~~~~~~~~~~~~l~~~k~if~E~~~~-~~~~~~l~~f~~~~~~~~~~~~~~~~~~~gailfaV 88 (136)
.+..+++|.+....+.+.+.+...+. +-.++-...+ .+.+.+++.|.+ +...+|+|.
T Consensus 347 ~~~~~ivf~~~~~~~~l~~~L~~~~~-------~v~~~~g~~~~~~r~~i~~~f~~---------------g~~~vLv~T 404 (510)
T 2oca_A 347 DENAFVMFKHVSHGKAIFDLIKNEYD-------KVYYVSGEVDTETRNIMKTLAEN---------------GKGIIIVAS 404 (510)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHTTCS-------SEEEESSSTTHHHHHHHHHHHHH---------------CCSCEEEEE
T ss_pred CCCeEEEEecHHHHHHHHHHHHHcCC-------CeEEEECCCCHHHHHHHHHHHhC---------------CCCCEEEEE
Confidence 35678888888888888888876431 2234444433 467888999974 223344433
Q ss_pred ecCccccccccCCCcceEEEEEcCCCCC
Q psy877 89 FRGKISEGIDFADNYARSVISVGIPFPS 116 (136)
Q Consensus 89 ~~Gk~SEGIDf~d~~~r~ViivGiPyp~ 116 (136)
...+++|||+++ ++.||+.+.|...
T Consensus 405 -~~~~~~GiDip~--v~~vi~~~~~~s~ 429 (510)
T 2oca_A 405 -YGVFSTGISVKN--LHHVVLAHGVKSK 429 (510)
T ss_dssp -HHHHHHSCCCCS--EEEEEESSCCCSC
T ss_pred -cChhhccccccc--CcEEEEeCCCCCH
Confidence 168899999998 8999999999533
No 42
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=94.49 E-value=0.15 Score=41.57 Aligned_cols=64 Identities=11% Similarity=0.063 Sum_probs=47.7
Q ss_pred cCcEEEEecCHHHHHHHHHHHhcCCcchhhccceeEEEcCCCchhHHHHHHHHHHHHhhhhhhcCCccCCCCCeEEEEee
Q psy877 10 IRGSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEPRRNDELENVMLGYFTAIKQAELRSSNTSEKNTGALLFTIF 89 (136)
Q Consensus 10 ~gg~lvFFpSY~~m~~~~~~~~~~~~~~~l~~~k~if~E~~~~~~~~~~l~~f~~~~~~~~~~~~~~~~~~~gailfaV~ 89 (136)
.+.++||+|+-...+.+++.++..++ +-..+-+ .+.+.++++|++ +.-.||+|.
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~~~-------~v~~lhg---~~r~~~~~~f~~---------------g~~~vLVaT- 224 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKAGK-------KVLYLNR---KTFESEYPKCKS---------------EKWDFVITT- 224 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHTTC-------CEEEEST---TTHHHHTTHHHH---------------SCCSEEEEC-
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCC-------eEEEeCC---ccHHHHHHhhcC---------------CCCeEEEEC-
Confidence 45699999999999999999986532 1122222 255788999875 346788877
Q ss_pred cCccccccccC
Q psy877 90 RGKISEGIDFA 100 (136)
Q Consensus 90 ~Gk~SEGIDf~ 100 (136)
--+++|||++
T Consensus 225 -~v~e~GiDip 234 (431)
T 2v6i_A 225 -DISEMGANFK 234 (431)
T ss_dssp -GGGGTSCCCC
T ss_pred -chHHcCcccC
Confidence 8999999998
No 43
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=94.41 E-value=0.13 Score=44.57 Aligned_cols=77 Identities=12% Similarity=0.109 Sum_probs=56.6
Q ss_pred CcEEEEecCHHHHHHHHHHHhcCCcchhhccceeEEEcCC-CchhHHHHHHHHHHHHhhhhhhcCCccCCCCCeEEEEee
Q psy877 11 RGSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEPR-RNDELENVMLGYFTAIKQAELRSSNTSEKNTGALLFTIF 89 (136)
Q Consensus 11 gg~lvFFpSY~~m~~~~~~~~~~~~~~~l~~~k~if~E~~-~~~~~~~~l~~f~~~~~~~~~~~~~~~~~~~gailfaV~ 89 (136)
.-+|||++|-...+.+.+.+...++ +..++-.. +..+...+++.|+. +.-.||+|.
T Consensus 440 ~~vlVf~~t~~~ae~L~~~L~~~gi-------~~~~lh~~~~~~~R~~~~~~f~~---------------g~~~VLvaT- 496 (664)
T 1c4o_A 440 ERTLVTVLTVRMAEELTSFLVEHGI-------RARYLHHELDAFKRQALIRDLRL---------------GHYDCLVGI- 496 (664)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTC-------CEEEECTTCCHHHHHHHHHHHHT---------------TSCSEEEES-
T ss_pred CEEEEEECCHHHHHHHHHHHHhcCC-------CceeecCCCCHHHHHHHHHHhhc---------------CCceEEEcc-
Confidence 3489999999999999999987653 22222222 23467788888863 234577766
Q ss_pred cCccccccccCCCcceEEEEEcCC
Q psy877 90 RGKISEGIDFADNYARSVISVGIP 113 (136)
Q Consensus 90 ~Gk~SEGIDf~d~~~r~ViivGiP 113 (136)
..+++|+|+++ ++.||+.+.+
T Consensus 497 -~~l~~GlDip~--v~lVI~~d~d 517 (664)
T 1c4o_A 497 -NLLREGLDIPE--VSLVAILDAD 517 (664)
T ss_dssp -CCCCTTCCCTT--EEEEEETTTT
T ss_pred -ChhhcCccCCC--CCEEEEeCCc
Confidence 88999999996 8999999875
No 44
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=94.09 E-value=0.22 Score=40.72 Aligned_cols=82 Identities=9% Similarity=0.037 Sum_probs=55.9
Q ss_pred cEEEEecCHHHHHHHHHHHhcC-CcchhhccceeEEEcCCC-chhHHHHHHHHHHHHhhhhhhcCCccCCCCCeEEEEee
Q psy877 12 GSTARIPNKDSANGCEIRWSST-GLMDRIREVKSVYCEPRR-NDELENVMLGYFTAIKQAELRSSNTSEKNTGALLFTIF 89 (136)
Q Consensus 12 g~lvFFpSY~~m~~~~~~~~~~-~~~~~l~~~k~if~E~~~-~~~~~~~l~~f~~~~~~~~~~~~~~~~~~~gailfaV~ 89 (136)
-++||..+-..++.+.+.+... +. ...++-... ..+.+.++++|++. + ....+|+++
T Consensus 343 k~lvF~~~~~~~~~l~~~l~~~~~~-------~~~~~~g~~~~~~R~~~~~~F~~~---~----------~~~vil~st- 401 (500)
T 1z63_A 343 KIAIFTQFVDMGKIIRNIIEKELNT-------EVPFLYGELSKKERDDIISKFQNN---P----------SVKFIVLSV- 401 (500)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHHTC-------CCCEEETTSCHHHHHHHHHHHHHC---T----------TCCCCEEEC-
T ss_pred cEEEEEehHHHHHHHHHHHHHhhCC-------CeEEEECCCCHHHHHHHHHHhcCC---C----------CCCEEEEec-
Confidence 5899999988888888887642 21 223344443 34788899999851 0 112366666
Q ss_pred cCccccccccCCCcceEEEEEcCCCCCC
Q psy877 90 RGKISEGIDFADNYARSVISVGIPFPSI 117 (136)
Q Consensus 90 ~Gk~SEGIDf~d~~~r~ViivGiPyp~~ 117 (136)
...+||+|+++ +..||+...|+-+.
T Consensus 402 -~~~~~Glnl~~--~~~vi~~d~~~~~~ 426 (500)
T 1z63_A 402 -KAGGFGINLTS--ANRVIHFDRWWNPA 426 (500)
T ss_dssp -CCC-CCCCCTT--CSEEEESSCCSCC-
T ss_pred -ccccCCCchhh--CCEEEEeCCCCCcc
Confidence 78899999986 89999999887543
No 45
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=93.99 E-value=0.12 Score=45.39 Aligned_cols=84 Identities=13% Similarity=0.124 Sum_probs=40.1
Q ss_pred CcEEEEecCHHHHHHHHHHHhcCCcchhhccceeEEEc-------C-CCchhHHHHHHHHHHHHhhhhhhcCCccCCCCC
Q psy877 11 RGSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCE-------P-RRNDELENVMLGYFTAIKQAELRSSNTSEKNTG 82 (136)
Q Consensus 11 gg~lvFFpSY~~m~~~~~~~~~~~~~~~l~~~k~if~E-------~-~~~~~~~~~l~~f~~~~~~~~~~~~~~~~~~~g 82 (136)
+-+|||.++-..++.+.+.+........+. ...|.- . -+..+...++++|++. +.-
T Consensus 632 ~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~--~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~--------------g~~ 695 (797)
T 4a2q_A 632 TRTLLFAKTRALVSALKKCMEENPILNYIK--PGVLMGRGRRDQTTGMTLPSQKGVLDAFKTS--------------KDN 695 (797)
T ss_dssp CCEEEEESSHHHHHHHHHHHHTCSTTCSCC--CEEC------------------------------------------CC
T ss_pred CeEEEEECcHHHHHHHHHHHHhCccccccc--ceEEEecCCcccCCCCCHHHHHHHHHHhhcc--------------CCc
Confidence 459999999999999999997642111111 001110 0 1123567788888751 134
Q ss_pred eEEEEeecCccccccccCCCcceEEEEEcCCC
Q psy877 83 ALLFTIFRGKISEGIDFADNYARSVISVGIPF 114 (136)
Q Consensus 83 ailfaV~~Gk~SEGIDf~d~~~r~ViivGiPy 114 (136)
.+|+|. --++||||+++ ++.||..+.|.
T Consensus 696 ~vLVaT--~~~~~GIDlp~--v~~VI~yd~p~ 723 (797)
T 4a2q_A 696 RLLIAT--SVADEGIDIVQ--CNLVVLYEYSG 723 (797)
T ss_dssp SEEEEE--CC-------CC--CSEEEEESCCS
T ss_pred eEEEEc--CchhcCCCchh--CCEEEEeCCCC
Confidence 578777 88999999997 89999999875
No 46
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=93.90 E-value=0.059 Score=43.80 Aligned_cols=74 Identities=14% Similarity=0.108 Sum_probs=54.4
Q ss_pred CcEEEEecCHHHHHHHHHHHhcCCcchhhccceeEEEcCCCchhHHHHHHHHHHHHhhhhhhcCCccCCCCCeEEEEeec
Q psy877 11 RGSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEPRRNDELENVMLGYFTAIKQAELRSSNTSEKNTGALLFTIFR 90 (136)
Q Consensus 11 gg~lvFFpSY~~m~~~~~~~~~~~~~~~l~~~k~if~E~~~~~~~~~~l~~f~~~~~~~~~~~~~~~~~~~gailfaV~~ 90 (136)
+.+|||.++-..++.+.+.+....+ --..+..+.+.++++|++ +...||+|.
T Consensus 350 ~k~lvF~~~~~~~~~l~~~l~~~~~-----------~g~~~~~~R~~~~~~F~~---------------g~~~vLv~T-- 401 (472)
T 2fwr_A 350 DKIIIFTRHNELVYRISKVFLIPAI-----------THRTSREEREEILEGFRT---------------GRFRAIVSS-- 401 (472)
T ss_dssp SCBCCBCSCHHHHHHHHHHTTCCBC-----------CSSSCSHHHHTHHHHHHH---------------SSCSBCBCS--
T ss_pred CcEEEEECCHHHHHHHHHHhCccee-----------eCCCCHHHHHHHHHHHhC---------------CCCCEEEEc--
Confidence 4589999999999999888752211 011123467889999975 245677666
Q ss_pred CccccccccCCCcceEEEEEcCCC
Q psy877 91 GKISEGIDFADNYARSVISVGIPF 114 (136)
Q Consensus 91 Gk~SEGIDf~d~~~r~ViivGiPy 114 (136)
..++||+|+++ +..||++..|.
T Consensus 402 ~~~~~Gldlp~--~~~Vi~~~~~~ 423 (472)
T 2fwr_A 402 QVLDEGIDVPD--ANVGVIMSGSG 423 (472)
T ss_dssp SCCCSSSCSCC--BSEEEEECCSS
T ss_pred CchhcCccccc--CcEEEEECCCC
Confidence 89999999987 67899999884
No 47
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=93.58 E-value=0.55 Score=36.10 Aligned_cols=85 Identities=8% Similarity=0.040 Sum_probs=58.5
Q ss_pred CcEEEEecCHHHHHHHHHHHhcC-CcchhhccceeEEEcCCC-chhHHHHHHHHHHHHhhhhhhcCCccCCCCCeEEEEe
Q psy877 11 RGSTARIPNKDSANGCEIRWSST-GLMDRIREVKSVYCEPRR-NDELENVMLGYFTAIKQAELRSSNTSEKNTGALLFTI 88 (136)
Q Consensus 11 gg~lvFFpSY~~m~~~~~~~~~~-~~~~~l~~~k~if~E~~~-~~~~~~~l~~f~~~~~~~~~~~~~~~~~~~gailfaV 88 (136)
.-+|||..+-..++.+...+... ++ ...++-+.. ..+.+.++++|.+. + ....+|++.
T Consensus 113 ~kvlIFs~~~~~~~~l~~~L~~~~g~-------~~~~l~G~~~~~~R~~~i~~F~~~---~----------~~~v~L~st 172 (271)
T 1z5z_A 113 DKIAIFTQFVDMGKIIRNIIEKELNT-------EVPFLYGELSKKERDDIISKFQNN---P----------SVKFIVLSV 172 (271)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHHHCS-------CCCEECTTSCHHHHHHHHHHHHHC---T----------TCCEEEEEC
T ss_pred CeEEEEeccHHHHHHHHHHHHHhcCC-------cEEEEECCCCHHHHHHHHHHhcCC---C----------CCCEEEEeh
Confidence 34899999888888888887652 22 223344443 34788899999851 0 112355555
Q ss_pred ecCccccccccCCCcceEEEEEcCCCCCCCc
Q psy877 89 FRGKISEGIDFADNYARSVISVGIPFPSIQD 119 (136)
Q Consensus 89 ~~Gk~SEGIDf~d~~~r~ViivGiPyp~~~d 119 (136)
...++|||+++ +..||+..+|.-+...
T Consensus 173 --~~~g~Glnl~~--a~~VI~~d~~wnp~~~ 199 (271)
T 1z5z_A 173 --KAGGFGINLTS--ANRVIHFDRWWNPAVE 199 (271)
T ss_dssp --CTTCCCCCCTT--CSEEEECSCCSCTTTC
T ss_pred --hhhcCCcCccc--CCEEEEECCCCChhHH
Confidence 77899999976 8999999999866543
No 48
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=93.51 E-value=0.11 Score=42.63 Aligned_cols=72 Identities=13% Similarity=0.122 Sum_probs=44.7
Q ss_pred cCcEEEEecCHHHHHHHHHHHhcCCcchhhccceeEEEcCCCchhHHHHHHHHHHHHhhhhhhcCCccCCCCCeEEEEee
Q psy877 10 IRGSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEPRRNDELENVMLGYFTAIKQAELRSSNTSEKNTGALLFTIF 89 (136)
Q Consensus 10 ~gg~lvFFpSY~~m~~~~~~~~~~~~~~~l~~~k~if~E~~~~~~~~~~l~~f~~~~~~~~~~~~~~~~~~~gailfaV~ 89 (136)
.+-++||+||-...+.+++.++..++ +-..+-. .+.+.++++|++ +.-.||+|.
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~~~-------~v~~lhg---~~R~~~~~~F~~---------------g~~~vLVaT- 230 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKAGK-------SVVVLNR---KTFEREYPTIKQ---------------KKPDFILAT- 230 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTC-------CEEECCS---SSCC-----------------------CCCSEEEES-
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCC-------CEEEecc---hhHHHHHhhhcC---------------CCceEEEEC-
Confidence 35699999999999999999987532 1112211 234568888874 345677777
Q ss_pred cCccccccccCCCcceEEEEEc
Q psy877 90 RGKISEGIDFADNYARSVISVG 111 (136)
Q Consensus 90 ~Gk~SEGIDf~d~~~r~ViivG 111 (136)
-.+++|||++ ++.||..|
T Consensus 231 -~v~e~GiDip---v~~VI~~g 248 (440)
T 1yks_A 231 -DIAEMGANLC---VERVLDCR 248 (440)
T ss_dssp -SSTTCCTTCC---CSEEEECC
T ss_pred -ChhheeeccC---ceEEEeCC
Confidence 8999999998 66777533
No 49
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=93.46 E-value=0.13 Score=44.96 Aligned_cols=74 Identities=11% Similarity=0.063 Sum_probs=53.9
Q ss_pred cCcEEEEecCHHHHHHHHHHHhcCCcchhhccceeEEEcCCCchhHHHHHHHHHHHHhhhhhhcCCccCCCCCeEEEEee
Q psy877 10 IRGSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEPRRNDELENVMLGYFTAIKQAELRSSNTSEKNTGALLFTIF 89 (136)
Q Consensus 10 ~gg~lvFFpSY~~m~~~~~~~~~~~~~~~l~~~k~if~E~~~~~~~~~~l~~f~~~~~~~~~~~~~~~~~~~gailfaV~ 89 (136)
.+.+|||+||-...+.+++.++..++ +-..+-. .+.+.+++.|++ +.-.||+|.
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~g~-------~v~~lHg---~eR~~v~~~F~~---------------g~~~VLVaT- 463 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRAGK-------RVIQLNR---KSYDTEYPKCKN---------------GDWDFVITT- 463 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTTTC-------CEEEECS---SSHHHHGGGGGT---------------CCCSEEEEC-
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCCC-------eEEEeCh---HHHHHHHHHHHC---------------CCceEEEEC-
Confidence 35699999999999999999987532 2122222 356778888864 345678777
Q ss_pred cCccccccccCCCcceEEEEEcCC
Q psy877 90 RGKISEGIDFADNYARSVISVGIP 113 (136)
Q Consensus 90 ~Gk~SEGIDf~d~~~r~ViivGiP 113 (136)
--+++|||++ ++.||..|.+
T Consensus 464 -dv~e~GIDip---v~~VI~~g~~ 483 (673)
T 2wv9_A 464 -DISEMGANFG---ASRVIDCRKS 483 (673)
T ss_dssp -GGGGTTCCCC---CSEEEECCEE
T ss_pred -chhhcceeeC---CcEEEECCCc
Confidence 8999999998 6788876643
No 50
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=92.92 E-value=0.15 Score=43.46 Aligned_cols=85 Identities=11% Similarity=0.029 Sum_probs=44.5
Q ss_pred CcEEEEecCHHHHHHHHHHHhcCCcchhhccceeEEEc---------CCCchhHHHHHHHHHHHHhhhhhhcCCccCCCC
Q psy877 11 RGSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCE---------PRRNDELENVMLGYFTAIKQAELRSSNTSEKNT 81 (136)
Q Consensus 11 gg~lvFFpSY~~m~~~~~~~~~~~~~~~l~~~k~if~E---------~~~~~~~~~~l~~f~~~~~~~~~~~~~~~~~~~ 81 (136)
+-+|||.++-...+.+.+.+...+....+ +..++- .-...+...++++|+.. +.
T Consensus 399 ~~~IIF~~~~~~~~~l~~~L~~~~~~~~~---~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~--------------g~ 461 (696)
T 2ykg_A 399 TITILFVKTRALVDALKNWIEGNPKLSFL---KPGILTGRGKTNQNTGMTLPAQKCILDAFKAS--------------GD 461 (696)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHCTTCCSC---CEEC-------------------------------------------C
T ss_pred CcEEEEeCcHHHHHHHHHHHHhCCCcccc---ceeEEEccCCCccccCCCHHHHHHHHHHHHhc--------------CC
Confidence 34999999999999999999876422111 111221 01123567788888641 13
Q ss_pred CeEEEEeecCccccccccCCCcceEEEEEcCCCCC
Q psy877 82 GALLFTIFRGKISEGIDFADNYARSVISVGIPFPS 116 (136)
Q Consensus 82 gailfaV~~Gk~SEGIDf~d~~~r~ViivGiPyp~ 116 (136)
-.||+|. --++||||+++ ++.||..++|...
T Consensus 462 ~~vLVaT--~v~~~GiDip~--v~~VI~~d~p~s~ 492 (696)
T 2ykg_A 462 HNILIAT--SVADEGIDIAQ--CNLVILYEYVGNV 492 (696)
T ss_dssp CSCSEEE--ESSCCC---CC--CSEEEEESCC--C
T ss_pred ccEEEEe--chhhcCCcCcc--CCEEEEeCCCCCH
Confidence 4577777 78899999997 8999999998643
No 51
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=92.92 E-value=0.19 Score=45.19 Aligned_cols=83 Identities=13% Similarity=0.092 Sum_probs=41.4
Q ss_pred CcEEEEecCHHHHHHHHHHHhcCCcchhhccceeEEEc--------C-CCchhHHHHHHHHHHHHhhhhhhcCCccCCCC
Q psy877 11 RGSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCE--------P-RRNDELENVMLGYFTAIKQAELRSSNTSEKNT 81 (136)
Q Consensus 11 gg~lvFFpSY~~m~~~~~~~~~~~~~~~l~~~k~if~E--------~-~~~~~~~~~l~~f~~~~~~~~~~~~~~~~~~~ 81 (136)
+-+|||.++-..++.+.+.+........+ +..++- . -+..+...++++|+.. +.
T Consensus 632 ~rvLIF~~t~~~ae~L~~~L~~~~~l~~i---k~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~--------------g~ 694 (936)
T 4a2w_A 632 TRTLLFAKTRALVSALKKCMEENPILNYI---KPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTS--------------KD 694 (936)
T ss_dssp CCEEEEESSHHHHHHHHHHHHHCSTTSSC---CCEEC------------------------------------------C
T ss_pred CeEEEEeCCHHHHHHHHHHHhhCcccccc---ceeEEecCCCcccCCCCCHHHHHHHHHHhhcc--------------CC
Confidence 45999999999999999999864211111 111110 0 1123567788888751 12
Q ss_pred CeEEEEeecCccccccccCCCcceEEEEEcCCC
Q psy877 82 GALLFTIFRGKISEGIDFADNYARSVISVGIPF 114 (136)
Q Consensus 82 gailfaV~~Gk~SEGIDf~d~~~r~ViivGiPy 114 (136)
-.||+|. --++||||+++ +..||..+.|.
T Consensus 695 ~~VLVaT--~~~~eGIDlp~--v~~VI~yD~p~ 723 (936)
T 4a2w_A 695 NRLLIAT--SVADEGIDIVQ--CNLVVLYEYSG 723 (936)
T ss_dssp CSEEEEE--CC------CCC--CSEEEEESCCS
T ss_pred eeEEEEe--CchhcCCcchh--CCEEEEeCCCC
Confidence 4578777 88999999997 89999999875
No 52
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=92.73 E-value=0.14 Score=47.04 Aligned_cols=80 Identities=15% Similarity=0.122 Sum_probs=56.5
Q ss_pred cccCcEEEEecCHHHHHHHHHHHhcCCcchhhccceeEEEcCCCchhHHHHHHHHHHHHhhhhhhcCCccCCCCCeEEEE
Q psy877 8 WLIRGSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEPRRNDELENVMLGYFTAIKQAELRSSNTSEKNTGALLFT 87 (136)
Q Consensus 8 ~~~gg~lvFFpSY~~m~~~~~~~~~~~~~~~l~~~k~if~E~~~~~~~~~~l~~f~~~~~~~~~~~~~~~~~~~gailfa 87 (136)
..++.+|||++|-...+.+.+.+...++- +.. .=.+ +... ++.|++ +.-.||+|
T Consensus 307 ~~~~~~LVF~~s~~~a~~l~~~L~~~g~~--------~~~-~lhg-~rr~-l~~F~~---------------G~~~VLVa 360 (1104)
T 4ddu_A 307 IFRDGILIFAQTEEEGKELYEYLKRFKFN--------VGE-TWSE-FEKN-FEDFKV---------------GKINILIG 360 (1104)
T ss_dssp HHCSSEEEEESSSHHHHHHHHHHHHTTCC--------EEE-SSSS-HHHH-HHHHHH---------------TSCSEEEE
T ss_pred hcCCCEEEEECcHHHHHHHHHHHHhCCCC--------eee-EecC-cHHH-HHHHHC---------------CCCCEEEE
Confidence 34577999999999999999999875431 110 1111 2344 888875 35678888
Q ss_pred ee--cCccccccccCCCcceEEEEEcCCC
Q psy877 88 IF--RGKISEGIDFADNYARSVISVGIPF 114 (136)
Q Consensus 88 V~--~Gk~SEGIDf~d~~~r~ViivGiPy 114 (136)
++ -..+++|||+++ .++.||-.++|-
T Consensus 361 tas~TdvlarGIDip~-~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 361 VQAYYGKLTRGVDLPE-RIKYVIFWGTPS 388 (1104)
T ss_dssp ETTTHHHHCCSCCCTT-TCCEEEEESCCE
T ss_pred ecCCCCeeEecCcCCC-CCCEEEEECCCC
Confidence 21 278999999986 257899999996
No 53
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=92.53 E-value=0.2 Score=45.32 Aligned_cols=80 Identities=15% Similarity=0.129 Sum_probs=58.4
Q ss_pred CcEEEEecCHHHHHHHHHHHhcC-CcchhhccceeEEEcCCC-chhHHHHHHHHHHHHhhhhhhcCCccCCCCCeEEEEe
Q psy877 11 RGSTARIPNKDSANGCEIRWSST-GLMDRIREVKSVYCEPRR-NDELENVMLGYFTAIKQAELRSSNTSEKNTGALLFTI 88 (136)
Q Consensus 11 gg~lvFFpSY~~m~~~~~~~~~~-~~~~~l~~~k~if~E~~~-~~~~~~~l~~f~~~~~~~~~~~~~~~~~~~gailfaV 88 (136)
+.++||..+-...+.+.+.+... ++ +-..+-+.. ..+.+.+++.|++. . ++--+|+|.
T Consensus 504 ~k~iVF~~~~~~~~~l~~~L~~~~g~-------~~~~lhG~~~~~~R~~~l~~F~~g---~----------~~~~vLvaT 563 (968)
T 3dmq_A 504 QKVLVICAKAATALQLEQVLREREGI-------RAAVFHEGMSIIERDRAAAWFAEE---D----------TGAQVLLCS 563 (968)
T ss_dssp SCCCEECSSTHHHHHHHHHHHTTTCC-------CEEEECTTSCTTHHHHHHHHHHST---T----------SSCEEEECS
T ss_pred CCEEEEeCcHHHHHHHHHHHHHHcCC-------cEEEEeCCCCHHHHHHHHHHHhCC---C----------CcccEEEec
Confidence 45899999999999999988842 32 233444432 35788999999851 0 124566655
Q ss_pred ecCccccccccCCCcceEEEEEcCCC
Q psy877 89 FRGKISEGIDFADNYARSVISVGIPF 114 (136)
Q Consensus 89 ~~Gk~SEGIDf~d~~~r~ViivGiPy 114 (136)
..+++|||+++ +..||+...|+
T Consensus 564 --~v~~~GlDl~~--~~~VI~~d~p~ 585 (968)
T 3dmq_A 564 --EIGSEGRNFQF--ASHMVMFDLPF 585 (968)
T ss_dssp --CCTTCSSCCTT--CCEEECSSCCS
T ss_pred --chhhcCCCccc--CcEEEEecCCC
Confidence 89999999997 88899999885
No 54
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=92.25 E-value=1.2 Score=38.96 Aligned_cols=84 Identities=14% Similarity=0.102 Sum_probs=59.3
Q ss_pred ccccCcEEEEecCHHHHHHHHHHHhcCCcchhhccceeEEEcCCC-chhHHHHHHHHHHHHhhhhhhcCCccCCCCCeEE
Q psy877 7 CWLIRGSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEPRR-NDELENVMLGYFTAIKQAELRSSNTSEKNTGALL 85 (136)
Q Consensus 7 ~~~~gg~lvFFpSY~~m~~~~~~~~~~~~~~~l~~~k~if~E~~~-~~~~~~~l~~f~~~~~~~~~~~~~~~~~~~gail 85 (136)
..+..|.+|||.|..-.+.+.+.+...++ .-.++=... ..+...+++.|+. +. +.-.||
T Consensus 317 ~~~~~g~iIf~~s~~~ie~la~~L~~~g~-------~v~~lHG~L~~~~R~~~~~~F~~----~~---------g~~~VL 376 (677)
T 3rc3_A 317 DNLRPGDCIVCFSKNDIYSVSRQIEIRGL-------ESAVIYGSLPPGTKLAQAKKFND----PN---------DPCKIL 376 (677)
T ss_dssp GGCCTTEEEECSSHHHHHHHHHHHHHTTC-------CCEEECTTSCHHHHHHHHHHHHC----TT---------SSCCEE
T ss_pred HhcCCCCEEEEcCHHHHHHHHHHHHhcCC-------CeeeeeccCCHHHHHHHHHHHHc----cC---------CCeEEE
Confidence 34457889999999999999999886532 222333332 2356788888874 11 235677
Q ss_pred EEeecCccccccccCCCcceEEEEEcCCCC
Q psy877 86 FTIFRGKISEGIDFADNYARSVISVGIPFP 115 (136)
Q Consensus 86 faV~~Gk~SEGIDf~d~~~r~ViivGiPyp 115 (136)
+|. ..++.|||+ + ++.||..|++-.
T Consensus 377 VAT--di~e~GlDi-~--v~~VI~~~~~k~ 401 (677)
T 3rc3_A 377 VAT--DAIGMGLNL-S--IRRIIFYSLIKP 401 (677)
T ss_dssp EEC--GGGGSSCCC-C--BSEEEESCSBC-
T ss_pred EeC--cHHHCCcCc-C--ccEEEECCcccc
Confidence 777 899999999 4 999999999754
No 55
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=92.17 E-value=0.98 Score=38.74 Aligned_cols=78 Identities=5% Similarity=0.020 Sum_probs=55.6
Q ss_pred cEEEEecCHHHHHHHHHHHhcCCcchhhccceeEEEcCCCc-hhHHHHHHHHHHHHhhhhhhcCCccCCCCC--eEEEEe
Q psy877 12 GSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEPRRN-DELENVMLGYFTAIKQAELRSSNTSEKNTG--ALLFTI 88 (136)
Q Consensus 12 g~lvFFpSY~~m~~~~~~~~~~~~~~~l~~~k~if~E~~~~-~~~~~~l~~f~~~~~~~~~~~~~~~~~~~g--ailfaV 88 (136)
-+|||..+-..++.+...+...++ .-+.+.+..+ .+.+.++++|.+ + ... .+|++.
T Consensus 418 k~lIFs~~~~~~~~l~~~l~~~g~-------~~~~l~G~~~~~~R~~~i~~F~~----~----------~~~~~v~L~st 476 (644)
T 1z3i_X 418 KVVLVSNYTQTLDLFEKLCRNRRY-------LYVRLDGTMSIKKRAKIVERFNN----P----------SSPEFIFMLSS 476 (644)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHTC-------CEEEECSSCCHHHHHHHHHHHHS----T----------TCCCCEEEEEG
T ss_pred EEEEEEccHHHHHHHHHHHHHCCC-------CEEEEeCCCCHHHHHHHHHHhcC----C----------CCCcEEEEEec
Confidence 488888888888888887775443 3355555543 478889999974 1 112 355555
Q ss_pred ecCccccccccCCCcceEEEEEcCCC
Q psy877 89 FRGKISEGIDFADNYARSVISVGIPF 114 (136)
Q Consensus 89 ~~Gk~SEGIDf~d~~~r~ViivGiPy 114 (136)
...++|||+++ +..||+...|.
T Consensus 477 --~a~g~Glnl~~--a~~Vi~~d~~w 498 (644)
T 1z3i_X 477 --KAGGCGLNLIG--ANRLVMFDPDW 498 (644)
T ss_dssp --GGSCTTCCCTT--EEEEEECSCCS
T ss_pred --ccccCCccccc--CCEEEEECCCC
Confidence 78899999986 89999999886
No 56
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=91.99 E-value=0.34 Score=44.04 Aligned_cols=84 Identities=12% Similarity=0.039 Sum_probs=55.5
Q ss_pred CcEEEEecCHHHHHHHHHHHhcCCcchh--------------------------------hccceeEEEcCC-CchhHHH
Q psy877 11 RGSTARIPNKDSANGCEIRWSSTGLMDR--------------------------------IREVKSVYCEPR-RNDELEN 57 (136)
Q Consensus 11 gg~lvFFpSY~~m~~~~~~~~~~~~~~~--------------------------------l~~~k~if~E~~-~~~~~~~ 57 (136)
+-+|||++|-...+.+...+...++-.. +....-.+.-.. ...+.+.
T Consensus 337 ~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~ 416 (997)
T 4a4z_A 337 LPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKEL 416 (997)
T ss_dssp CSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHH
T ss_pred CCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHH
Confidence 4589999999999999888876443110 000011112111 1235666
Q ss_pred HHHHHHHHHhhhhhhcCCccCCCCCeEEEEeecCccccccccCCCcceEEEEEcCCC
Q psy877 58 VMLGYFTAIKQAELRSSNTSEKNTGALLFTIFRGKISEGIDFADNYARSVISVGIPF 114 (136)
Q Consensus 58 ~l~~f~~~~~~~~~~~~~~~~~~~gailfaV~~Gk~SEGIDf~d~~~r~ViivGiPy 114 (136)
+++.|.+ +.-.||+|. -.+++|||+++ +.||+.++|-
T Consensus 417 v~~~F~~---------------G~~kVLvAT--~~~a~GIDiP~---~~VVi~~~~k 453 (997)
T 4a4z_A 417 IEILFSK---------------GFIKVLFAT--ETFAMGLNLPT---RTVIFSSIRK 453 (997)
T ss_dssp HHHHHHT---------------TCCSEEEEC--THHHHSCCCCC---SEEEESCSEE
T ss_pred HHHHHHC---------------CCCcEEEEc--hHhhCCCCCCC---ceEEEecccc
Confidence 7777763 346788888 89999999999 8888888775
No 57
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=90.50 E-value=0.42 Score=42.08 Aligned_cols=80 Identities=10% Similarity=-0.012 Sum_probs=56.8
Q ss_pred cEEEEecCHHHHHHHHHHHhcCCcchhhccceeEEEcCCCc-hhHHHHHHHHHHHHhhhhhhcCCccCCCCCeEEEEeec
Q psy877 12 GSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEPRRN-DELENVMLGYFTAIKQAELRSSNTSEKNTGALLFTIFR 90 (136)
Q Consensus 12 g~lvFFpSY~~m~~~~~~~~~~~~~~~l~~~k~if~E~~~~-~~~~~~l~~f~~~~~~~~~~~~~~~~~~~gailfaV~~ 90 (136)
-+|||...-..++.+.+.+...++ +...+-+..+ .+.+.++++|.. +. +..-.+|++.
T Consensus 574 kvLIFsq~~~~ld~L~~~L~~~g~-------~~~~i~G~~~~~eR~~~i~~F~~----~~--------~~~~v~LlSt-- 632 (800)
T 3mwy_W 574 RVLIFSQMVRMLDILGDYLSIKGI-------NFQRLDGTVPSAQRRISIDHFNS----PD--------SNDFVFLLST-- 632 (800)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHTC-------CCEEESTTSCHHHHHHHHHTTSS----TT--------CSCCCEEEEH--
T ss_pred eEEEEechHHHHHHHHHHHHhCCC-------CEEEEeCCCCHHHHHHHHHHhhC----CC--------CCceEEEEec--
Confidence 489999988889888888875443 3455555543 467888888863 10 0112466665
Q ss_pred CccccccccCCCcceEEEEEcCCC
Q psy877 91 GKISEGIDFADNYARSVISVGIPF 114 (136)
Q Consensus 91 Gk~SEGIDf~d~~~r~ViivGiPy 114 (136)
...+||||++. |..||+...|.
T Consensus 633 ~agg~GlNL~~--a~~VI~~D~~w 654 (800)
T 3mwy_W 633 RAGGLGINLMT--ADTVVIFDSDW 654 (800)
T ss_dssp HHHTTTCCCTT--CCEEEESSCCS
T ss_pred ccccCCCCccc--cceEEEecCCC
Confidence 77899999987 89999999886
No 58
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=85.63 E-value=1.4 Score=40.64 Aligned_cols=79 Identities=18% Similarity=0.144 Sum_probs=54.7
Q ss_pred CcEEEEecCHHHHHHHHHHHhcCCcchhhccceeEEEcCCCc-hhHHHHHHHHHHHHhhhhhhcCCccCCCCCeEEEEee
Q psy877 11 RGSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEPRRN-DELENVMLGYFTAIKQAELRSSNTSEKNTGALLFTIF 89 (136)
Q Consensus 11 gg~lvFFpSY~~m~~~~~~~~~~~~~~~l~~~k~if~E~~~~-~~~~~~l~~f~~~~~~~~~~~~~~~~~~~gailfaV~ 89 (136)
+-++||+++-..++.+.+.++... ...+-.++-++.. .+.+.++++|.+ +.-.||+|.
T Consensus 813 ~qvlvf~~~v~~~~~l~~~L~~~~-----p~~~v~~lhg~~~~~eR~~il~~F~~---------------g~~~VLVaT- 871 (1151)
T 2eyq_A 813 GQVYYLYNDVENIQKAAERLAELV-----PEARIAIGHGQMRERELERVMNDFHH---------------QRFNVLVCT- 871 (1151)
T ss_dssp CEEEEECCCSSCHHHHHHHHHHHC-----TTSCEEECCSSCCHHHHHHHHHHHHT---------------TSCCEEEES-
T ss_pred CeEEEEECCHHHHHHHHHHHHHhC-----CCCeEEEEeCCCCHHHHHHHHHHHHc---------------CCCcEEEEC-
Confidence 348999999888888888887531 0112223333332 467889999874 346788887
Q ss_pred cCccccccccCCCcceEEEEEcCC
Q psy877 90 RGKISEGIDFADNYARSVISVGIP 113 (136)
Q Consensus 90 ~Gk~SEGIDf~d~~~r~ViivGiP 113 (136)
..+++|||+++ ++.||+...+
T Consensus 872 -~v~e~GiDip~--v~~VIi~~~~ 892 (1151)
T 2eyq_A 872 -TIIETGIDIPT--ANTIIIERAD 892 (1151)
T ss_dssp -STTGGGSCCTT--EEEEEETTTT
T ss_pred -CcceeeecccC--CcEEEEeCCC
Confidence 89999999997 6778877663
No 59
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=83.87 E-value=5.1 Score=34.30 Aligned_cols=81 Identities=10% Similarity=0.119 Sum_probs=48.9
Q ss_pred CcEEEEecCHHHHHHHHHHHhcCCcc---h------------hh-----------c---cceeEEEcCCC-chhHHHHHH
Q psy877 11 RGSTARIPNKDSANGCEIRWSSTGLM---D------------RI-----------R---EVKSVYCEPRR-NDELENVML 60 (136)
Q Consensus 11 gg~lvFFpSY~~m~~~~~~~~~~~~~---~------------~l-----------~---~~k~if~E~~~-~~~~~~~l~ 60 (136)
+.+|||+||-...+.+...+...... . ++ . ...-.+.=... ..+...+++
T Consensus 253 ~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~ 332 (715)
T 2va8_A 253 GQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEE 332 (715)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHH
Confidence 56999999999999998888753110 0 00 0 00112222221 235566677
Q ss_pred HHHHHHhhhhhhcCCccCCCCCeEEEEeecCccccccccCCCcceEEEEEc
Q psy877 61 GYFTAIKQAELRSSNTSEKNTGALLFTIFRGKISEGIDFADNYARSVISVG 111 (136)
Q Consensus 61 ~f~~~~~~~~~~~~~~~~~~~gailfaV~~Gk~SEGIDf~d~~~r~ViivG 111 (136)
.|.+ +.-.|++|. -.+++|||+++. .|||-+
T Consensus 333 ~f~~---------------g~~~vlvaT--~~l~~Gidip~~---~~VI~~ 363 (715)
T 2va8_A 333 GFRQ---------------RKIKVIVAT--PTLAAGVNLPAR---TVIIGD 363 (715)
T ss_dssp HHHT---------------TCSCEEEEC--GGGGGSSCCCBS---EEEECC
T ss_pred HHHc---------------CCCeEEEEC--hHHhcccCCCce---EEEEeC
Confidence 6763 345677777 899999999984 445544
No 60
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=83.05 E-value=3.7 Score=35.28 Aligned_cols=75 Identities=13% Similarity=0.108 Sum_probs=46.0
Q ss_pred CcEEEEecCHHHHHHHHHHHhcCCc--c------------hhh------------ccceeEEEcCC-CchhHHHHHHHHH
Q psy877 11 RGSTARIPNKDSANGCEIRWSSTGL--M------------DRI------------REVKSVYCEPR-RNDELENVMLGYF 63 (136)
Q Consensus 11 gg~lvFFpSY~~m~~~~~~~~~~~~--~------------~~l------------~~~k~if~E~~-~~~~~~~~l~~f~ 63 (136)
+.+|||++|-...+.+...+..... . +.+ ....-.+.=.. ...+...+++.|+
T Consensus 238 ~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~ 317 (720)
T 2zj8_A 238 KGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFR 317 (720)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHH
T ss_pred CCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHH
Confidence 5699999999999998888764200 0 000 00011122122 2235667777776
Q ss_pred HHHhhhhhhcCCccCCCCCeEEEEeecCccccccccCCC
Q psy877 64 TAIKQAELRSSNTSEKNTGALLFTIFRGKISEGIDFADN 102 (136)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~gailfaV~~Gk~SEGIDf~d~ 102 (136)
+ +.-.|++|. -.+++|||+++.
T Consensus 318 ~---------------g~~~vlvaT--~~l~~Gvdip~~ 339 (720)
T 2zj8_A 318 K---------------GIIKAVVAT--PTLSAGINTPAF 339 (720)
T ss_dssp T---------------TSSCEEEEC--STTGGGCCCCBS
T ss_pred C---------------CCCeEEEEC--cHhhccCCCCce
Confidence 3 235677777 899999999984
No 61
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=81.16 E-value=5.4 Score=36.30 Aligned_cols=82 Identities=11% Similarity=0.103 Sum_probs=49.9
Q ss_pred cEEEEecCHHHHHHHHHHHhcCCcchh----------------hccc---------------eeEEE-cCCC-chhHHHH
Q psy877 12 GSTARIPNKDSANGCEIRWSSTGLMDR----------------IREV---------------KSVYC-EPRR-NDELENV 58 (136)
Q Consensus 12 g~lvFFpSY~~m~~~~~~~~~~~~~~~----------------l~~~---------------k~if~-E~~~-~~~~~~~ 58 (136)
-+|||.+|-...+.+...+...++... +... ..|.+ =... ..+.+.+
T Consensus 345 ~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~v 424 (1010)
T 2xgj_A 345 PVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVI 424 (1010)
T ss_dssp SEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHH
T ss_pred CEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHH
Confidence 499999999999999888876432110 0000 00111 1111 1245566
Q ss_pred HHHHHHHHhhhhhhcCCccCCCCCeEEEEeecCccccccccCCCcceEEEEEcCC
Q psy877 59 MLGYFTAIKQAELRSSNTSEKNTGALLFTIFRGKISEGIDFADNYARSVISVGIP 113 (136)
Q Consensus 59 l~~f~~~~~~~~~~~~~~~~~~~gailfaV~~Gk~SEGIDf~d~~~r~ViivGiP 113 (136)
++.|++ +.--||+|. -.+++|||+++ +.|||.+++
T Consensus 425 e~~F~~---------------G~ikVLVAT--~~la~GIDiP~---~~vVI~~~~ 459 (1010)
T 2xgj_A 425 EILFQE---------------GFLKVLFAT--ETFSIGLNMPA---KTVVFTSVR 459 (1010)
T ss_dssp HHHHHT---------------TCCSEEEEE--GGGGGSTTCCB---SEEEESCSE
T ss_pred HHHHhc---------------CCCcEEEEe--hHhhccCCCCC---ceEEEeCCc
Confidence 666653 345688888 89999999997 445665544
No 62
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=80.42 E-value=0.86 Score=40.24 Aligned_cols=88 Identities=10% Similarity=0.082 Sum_probs=49.9
Q ss_pred cCcEEEEecCHHHHHHHHHHHhcCCcchhh----c-cceeEEEcCCCc--hhHHHHHHHHHHHHhhhhhhcCCccCCCCC
Q psy877 10 IRGSTARIPNKDSANGCEIRWSSTGLMDRI----R-EVKSVYCEPRRN--DELENVMLGYFTAIKQAELRSSNTSEKNTG 82 (136)
Q Consensus 10 ~gg~lvFFpSY~~m~~~~~~~~~~~~~~~l----~-~~k~if~E~~~~--~~~~~~l~~f~~~~~~~~~~~~~~~~~~~g 82 (136)
++.+|||+|+....+.+.+.+.... ..+ . ..-.+..=..+. .+...+++.|... . +..+.-
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~--~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~-~---------~~~g~~ 370 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEG--DQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPES-H---------NGRPGR 370 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHH--HHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCC-S---------SSSCCE
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHH--HhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccc-c---------CCCCce
Confidence 4669999999999999988876410 000 0 011122211111 2333344443200 0 001334
Q ss_pred eEEEEeecCccccccccCCCcceEEEEEcCC
Q psy877 83 ALLFTIFRGKISEGIDFADNYARSVISVGIP 113 (136)
Q Consensus 83 ailfaV~~Gk~SEGIDf~d~~~r~ViivGiP 113 (136)
.|++|. -.++.|||+++ ++.||-.|++
T Consensus 371 kVlVAT--~iae~GidIp~--v~~VId~g~~ 397 (773)
T 2xau_A 371 KVVIST--NIAETSLTIDG--IVYVVDPGFS 397 (773)
T ss_dssp EEEEEC--THHHHTCCCTT--EEEEEECSEE
T ss_pred EEEEeC--cHHHhCcCcCC--eEEEEeCCCc
Confidence 566666 89999999985 7899998883
No 63
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=80.11 E-value=5.2 Score=34.26 Aligned_cols=75 Identities=11% Similarity=0.139 Sum_probs=44.7
Q ss_pred CcEEEEecCHHHHHHHHHHHhcCC--------cchhhc---------------cceeEEEcCC-CchhHHHHHHHHHHHH
Q psy877 11 RGSTARIPNKDSANGCEIRWSSTG--------LMDRIR---------------EVKSVYCEPR-RNDELENVMLGYFTAI 66 (136)
Q Consensus 11 gg~lvFFpSY~~m~~~~~~~~~~~--------~~~~l~---------------~~k~if~E~~-~~~~~~~~l~~f~~~~ 66 (136)
+.+|||+||-...+.+...+.... ..+.+. ...-.+.=.. ...+...+++.|.+
T Consensus 243 ~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~-- 320 (702)
T 2p6r_A 243 GGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRR-- 320 (702)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHT--
T ss_pred CCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHC--
Confidence 569999999999999888776420 000000 0001111111 12355666776763
Q ss_pred hhhhhhcCCccCCCCCeEEEEeecCccccccccCCC
Q psy877 67 KQAELRSSNTSEKNTGALLFTIFRGKISEGIDFADN 102 (136)
Q Consensus 67 ~~~~~~~~~~~~~~~gailfaV~~Gk~SEGIDf~d~ 102 (136)
+.-.|++|. -.+++|||+++.
T Consensus 321 -------------g~~~vlvaT--~~l~~Gidip~~ 341 (702)
T 2p6r_A 321 -------------GNIKVVVAT--PTLAAGVNLPAR 341 (702)
T ss_dssp -------------TSCCEEEEC--STTTSSSCCCBS
T ss_pred -------------CCCeEEEEC--cHHhccCCCCce
Confidence 345677776 899999999974
No 64
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=78.14 E-value=3.1 Score=38.26 Aligned_cols=87 Identities=9% Similarity=0.004 Sum_probs=51.8
Q ss_pred CcEEEEecCHHHHHHHHHHHhcCCcchh----------------hc----------------cceeEEEcCCC-chhHHH
Q psy877 11 RGSTARIPNKDSANGCEIRWSSTGLMDR----------------IR----------------EVKSVYCEPRR-NDELEN 57 (136)
Q Consensus 11 gg~lvFFpSY~~m~~~~~~~~~~~~~~~----------------l~----------------~~k~if~E~~~-~~~~~~ 57 (136)
+.+|||++|-...+.+...+...++-.. +. ...-.+.=... ..+.+.
T Consensus 442 ~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~ 521 (1108)
T 3l9o_A 442 NPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEV 521 (1108)
T ss_dssp CCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHH
T ss_pred CCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHH
Confidence 3599999999999999888764221100 00 00011122221 235677
Q ss_pred HHHHHHHHHhhhhhhcCCccCCCCCeEEEEeecCccccccccCCCcceEEEEEcCCCCC
Q psy877 58 VMLGYFTAIKQAELRSSNTSEKNTGALLFTIFRGKISEGIDFADNYARSVISVGIPFPS 116 (136)
Q Consensus 58 ~l~~f~~~~~~~~~~~~~~~~~~~gailfaV~~Gk~SEGIDf~d~~~r~ViivGiPyp~ 116 (136)
+++.|.+ +.-.||+|. -.+++|||+++ ++.||-...||-.
T Consensus 522 v~~~F~~---------------G~ikVLVAT--~vla~GIDiP~--v~~VI~~~~~~d~ 561 (1108)
T 3l9o_A 522 IEILFQE---------------GFLKVLFAT--ETFSIGLNMPA--KTVVFTSVRKWDG 561 (1108)
T ss_dssp HHHHHHH---------------TCCCEEEEE--SCCCSCCCC----CEEEESCSEEESS
T ss_pred HHHHHhC---------------CCCeEEEEC--cHHhcCCCCCC--ceEEEecCcccCc
Confidence 8888874 346788888 99999999997 3445545555543
No 65
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=71.44 E-value=5.5 Score=34.80 Aligned_cols=68 Identities=13% Similarity=0.047 Sum_probs=46.1
Q ss_pred CcEEEEecCHHHHHHHHHHHhcCCcchhhccceeEEEcCCCchhHHHHHHHHHHHHhhhhhhcCCccCCCCCeEEEEeec
Q psy877 11 RGSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEPRRNDELENVMLGYFTAIKQAELRSSNTSEKNTGALLFTIFR 90 (136)
Q Consensus 11 gg~lvFFpSY~~m~~~~~~~~~~~~~~~l~~~k~if~E~~~~~~~~~~l~~f~~~~~~~~~~~~~~~~~~~gailfaV~~ 90 (136)
+.+|||+++-+..+.+.+.++..++ +-..+-.....+ ++. + ++..||+|.
T Consensus 397 ~~vLVFv~Tr~~ae~la~~L~~~g~-------~v~~lHG~l~q~------er~----~-----------~~~~VLVAT-- 446 (666)
T 3o8b_A 397 GRHLIFCHSKKKCDELAAKLSGLGI-------NAVAYYRGLDVS------VIP----T-----------IGDVVVVAT-- 446 (666)
T ss_dssp SEEEEECSCHHHHHHHHHHHHTTTC-------CEEEECTTSCGG------GSC----S-----------SSCEEEEEC--
T ss_pred CcEEEEeCCHHHHHHHHHHHHhCCC-------cEEEecCCCCHH------HHH----h-----------CCCcEEEEC--
Confidence 4599999999999999999987543 212222221111 111 1 234788877
Q ss_pred CccccccccCCCcceEEEEEc
Q psy877 91 GKISEGIDFADNYARSVISVG 111 (136)
Q Consensus 91 Gk~SEGIDf~d~~~r~ViivG 111 (136)
--+++|||+ + .+.||-+|
T Consensus 447 dVaerGIDI-d--V~~VI~~G 464 (666)
T 3o8b_A 447 DALMTGYTG-D--FDSVIDCN 464 (666)
T ss_dssp TTHHHHCCC-C--BSEEEECC
T ss_pred ChHHccCCC-C--CcEEEecC
Confidence 899999997 3 99999777
No 66
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=63.53 E-value=13 Score=33.44 Aligned_cols=64 Identities=9% Similarity=0.118 Sum_probs=41.3
Q ss_pred cEEEEecCHHHHHHHHHHHhcCCcchhhccceeEEEcCCCchhHHHHHHHHHHHHhhhhhhcCCccCCCCCeEEEEeecC
Q psy877 12 GSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEPRRNDELENVMLGYFTAIKQAELRSSNTSEKNTGALLFTIFRG 91 (136)
Q Consensus 12 g~lvFFpSY~~m~~~~~~~~~~~~~~~l~~~k~if~E~~~~~~~~~~l~~f~~~~~~~~~~~~~~~~~~~gailfaV~~G 91 (136)
-+|||+.|-.-.+.+...+...++-.. .+-. +..+.+..+-.+ .+ ..|.|+.|. -
T Consensus 476 pVLVFt~S~e~sE~Ls~~L~~~Gi~~~-------vLhg-kq~~rE~~ii~~-----ag----------~~g~VtVAT--d 530 (822)
T 3jux_A 476 PVLVGTTSIEKSELLSSMLKKKGIPHQ-------VLNA-KYHEKEAEIVAK-----AG----------QKGMVTIAT--N 530 (822)
T ss_dssp CEEEEESSHHHHHHHHHHHHTTTCCCE-------EECS-CHHHHHHHHHHH-----HH----------STTCEEEEE--T
T ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEE-------EeeC-CchHHHHHHHHh-----CC----------CCCeEEEEc--c
Confidence 499999999999999999987665321 1111 122222222211 11 247888888 8
Q ss_pred ccccccccC
Q psy877 92 KISEGIDFA 100 (136)
Q Consensus 92 k~SEGIDf~ 100 (136)
-.+.|+|++
T Consensus 531 mAgRGtDI~ 539 (822)
T 3jux_A 531 MAGRGTDIK 539 (822)
T ss_dssp TTTTTCCCC
T ss_pred hhhCCcCcc
Confidence 999999997
No 67
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=57.99 E-value=28 Score=33.63 Aligned_cols=29 Identities=14% Similarity=0.228 Sum_probs=22.5
Q ss_pred CCeEEEEeecCccccccccCCCcceEEEEEcCCC
Q psy877 81 TGALLFTIFRGKISEGIDFADNYARSVISVGIPF 114 (136)
Q Consensus 81 ~gailfaV~~Gk~SEGIDf~d~~~r~ViivGiPy 114 (136)
.=.||+|. -.++.|||++. +.|||-|.++
T Consensus 1239 ~i~VLvaT--~tlA~GVnlPa---~~VVI~~~~~ 1267 (1724)
T 4f92_B 1239 AIQVVVAS--RSLCWGMNVAA---HLVIIMDTQY 1267 (1724)
T ss_dssp SBCEEEEE--GGGSSSCCCCB---SEEEEECSEE
T ss_pred CCeEEEEC--hHHHcCCCCCc---cEEEEecCcc
Confidence 34566666 99999999995 7889988764
No 68
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=57.66 E-value=14 Score=33.31 Aligned_cols=64 Identities=13% Similarity=0.160 Sum_probs=39.1
Q ss_pred cEEEEecCHHHHHHHHHHHhcCCcchhhccceeEEEcCCCchhHHHHHHHHHHHHhhhhhhcCCccCCCCCeEEEEeecC
Q psy877 12 GSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEPRRNDELENVMLGYFTAIKQAELRSSNTSEKNTGALLFTIFRG 91 (136)
Q Consensus 12 g~lvFFpSY~~m~~~~~~~~~~~~~~~l~~~k~if~E~~~~~~~~~~l~~f~~~~~~~~~~~~~~~~~~~gailfaV~~G 91 (136)
-+|||+.|-.-.+.+...+...++-.. .+ ..+..+.+..+-. ..+ ..|+|+.|. -
T Consensus 434 pvLVft~s~~~se~Ls~~L~~~gi~~~-------vL-hg~~~~rEr~ii~-----~ag----------~~g~VlIAT--d 488 (844)
T 1tf5_A 434 PVLVGTVAVETSELISKLLKNKGIPHQ-------VL-NAKNHEREAQIIE-----EAG----------QKGAVTIAT--N 488 (844)
T ss_dssp CEEEEESCHHHHHHHHHHHHTTTCCCE-------EE-CSSCHHHHHHHHT-----TTT----------STTCEEEEE--T
T ss_pred cEEEEECCHHHHHHHHHHHHHCCCCEE-------Ee-eCCccHHHHHHHH-----HcC----------CCCeEEEeC--C
Confidence 489999999888888888887654211 11 1112221211110 111 247888877 8
Q ss_pred ccccccccC
Q psy877 92 KISEGIDFA 100 (136)
Q Consensus 92 k~SEGIDf~ 100 (136)
-.+.|+|.+
T Consensus 489 mAgRG~DI~ 497 (844)
T 1tf5_A 489 MAGRGTDIK 497 (844)
T ss_dssp TSSTTCCCC
T ss_pred ccccCcCcc
Confidence 999999998
No 69
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=46.37 E-value=5.8 Score=35.15 Aligned_cols=43 Identities=23% Similarity=0.282 Sum_probs=33.2
Q ss_pred hhHHHHHHHHHHHHhhhhhhcCCccCCCCCeEEEEeecCccccccccCCCcceEEEEEcCCC
Q psy877 53 DELENVMLGYFTAIKQAELRSSNTSEKNTGALLFTIFRGKISEGIDFADNYARSVISVGIPF 114 (136)
Q Consensus 53 ~~~~~~l~~f~~~~~~~~~~~~~~~~~~~gailfaV~~Gk~SEGIDf~d~~~r~ViivGiPy 114 (136)
.+.+.++++|++ +.-.||+|. -.+++|||+++ ++.||+.+.|-
T Consensus 626 ~eR~~v~~~F~~---------------G~~~ILVaT--~vie~GIDiP~--v~~VIi~d~~r 668 (780)
T 1gm5_A 626 EEKDRVMLEFAE---------------GRYDILVST--TVIEVGIDVPR--ANVMVIENPER 668 (780)
T ss_dssp SCSHHHHHHHTT---------------TSSSBCCCS--SCCCSCSCCTT--CCEEEBCSCSS
T ss_pred HHHHHHHHHHHC---------------CCCeEEEEC--CCCCccccCCC--CCEEEEeCCCC
Confidence 356788888864 345677776 89999999998 78888888773
No 70
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=45.89 E-value=55 Score=29.97 Aligned_cols=29 Identities=21% Similarity=0.254 Sum_probs=23.7
Q ss_pred CCeEEEEeecCccccccccCCCcceEEEEEcCCC
Q psy877 81 TGALLFTIFRGKISEGIDFADNYARSVISVGIPF 114 (136)
Q Consensus 81 ~gailfaV~~Gk~SEGIDf~d~~~r~ViivGiPy 114 (136)
.--||++| ..+.+|+|.|.- .|+.+-.|.
T Consensus 649 ~i~ILIvv--d~lltGfDiP~l---~tlylDkpl 677 (1038)
T 2w00_A 649 DIDLLIVV--GMFLTGFDAPTL---NTLFVDKNL 677 (1038)
T ss_dssp SSSEEEES--STTSSSCCCTTE---EEEEEESCC
T ss_pred CCeEEEEc--chHHhCcCcccc---cEEEEccCC
Confidence 45788888 999999999985 577788776
No 71
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=45.75 E-value=27 Score=31.52 Aligned_cols=65 Identities=8% Similarity=0.075 Sum_probs=40.4
Q ss_pred cEEEEecCHHHHHHHHHHHhcCCcchhhccceeEEEcCCCchhHHHHHHHHHHHHhhhhhhcCCccCCCCCeEEEEeecC
Q psy877 12 GSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEPRRNDELENVMLGYFTAIKQAELRSSNTSEKNTGALLFTIFRG 91 (136)
Q Consensus 12 g~lvFFpSY~~m~~~~~~~~~~~~~~~l~~~k~if~E~~~~~~~~~~l~~f~~~~~~~~~~~~~~~~~~~gailfaV~~G 91 (136)
-+|||+.|-.--+.+...++..++-.... ..+..+.+..+- ...+ ..|+|+.|. -
T Consensus 443 pvLVft~sie~se~Ls~~L~~~gi~~~vL--------nak~~~rEa~ii-----a~ag----------r~G~VtIAT--n 497 (853)
T 2fsf_A 443 PVLVGTISIEKSELVSNELTKAGIKHNVL--------NAKFHANEAAIV-----AQAG----------YPAAVTIAT--N 497 (853)
T ss_dssp CEEEEESSHHHHHHHHHHHHHTTCCCEEC--------CTTCHHHHHHHH-----HTTT----------STTCEEEEE--S
T ss_pred CEEEEECcHHHHHHHHHHHHHCCCCEEEe--------cCChhHHHHHHH-----HhcC----------CCCeEEEec--c
Confidence 48999999999999988888766522111 111121111110 0111 247888888 8
Q ss_pred ccccccccCC
Q psy877 92 KISEGIDFAD 101 (136)
Q Consensus 92 k~SEGIDf~d 101 (136)
-.+.|+|++.
T Consensus 498 mAgRGtDI~l 507 (853)
T 2fsf_A 498 MAGRGTDIVL 507 (853)
T ss_dssp CCSSCSCCCT
T ss_pred cccCCcCccC
Confidence 8999999986
No 72
>2oq3_A Mannitol-specific cryptic phosphotransferase enzyme IIA component; solution structure; NMR {Escherichia coli}
Probab=44.52 E-value=14 Score=25.00 Aligned_cols=28 Identities=11% Similarity=0.220 Sum_probs=22.7
Q ss_pred EEEeecCccccccccCC--CcceEEEEEcCCC
Q psy877 85 LFTIFRGKISEGIDFAD--NYARSVISVGIPF 114 (136)
Q Consensus 85 lfaV~~Gk~SEGIDf~d--~~~r~ViivGiPy 114 (136)
.+++ +++.+||+|.+ ...+.|+++.+|=
T Consensus 81 ~i~i--~~l~~pi~~~~~d~~V~~if~la~~~ 110 (150)
T 2oq3_A 81 GMSL--TLLEQGVYFPGNDEPIKLLIGLSAAD 110 (150)
T ss_dssp EEEE--EEEEEEECCTTCSSCEEEEEEEECSS
T ss_pred eEEE--EEeCCCEEeCCCCceEEEEEEEeeCC
Confidence 3444 77889999977 7799999999884
No 73
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=39.96 E-value=18 Score=22.08 Aligned_cols=18 Identities=17% Similarity=0.339 Sum_probs=16.3
Q ss_pred cCHHHHHHHHHHHhcCCc
Q psy877 18 PNKDSANGCEIRWSSTGL 35 (136)
Q Consensus 18 pSY~~m~~~~~~~~~~~~ 35 (136)
+|+.|++.++..|++.++
T Consensus 53 ~s~~Yi~~Il~~W~~~gi 70 (78)
T 2zc2_A 53 TNWNYIQAILRNWRHEGI 70 (78)
T ss_dssp CCHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHcCC
Confidence 799999999999998765
No 74
>2a0j_A PTS system, nitrogen regulatory IIA protein; nitrogen regulation, structural genomics, OPPF, oxford prote production facility; 2.50A {Neisseria meningitidis}
Probab=38.45 E-value=15 Score=24.80 Aligned_cols=25 Identities=12% Similarity=0.142 Sum_probs=21.3
Q ss_pred CccccccccC---CCcceEEEEEcCCCC
Q psy877 91 GKISEGIDFA---DNYARSVISVGIPFP 115 (136)
Q Consensus 91 Gk~SEGIDf~---d~~~r~ViivGiPyp 115 (136)
+++.+||+|. ++..+.|+++.+|=.
T Consensus 81 ~~l~~pi~~~~~d~~~V~~if~l~~~~~ 108 (149)
T 2a0j_A 81 IRTREPVGFDAPDGKPVSLIFILLVPEN 108 (149)
T ss_dssp EEEEEEECCCCTTSCCEEEEEEEEEESS
T ss_pred EEeCCCcccCCCCCCeeEEEEEEEcCCc
Confidence 7788999997 567999999999864
No 75
>1sn9_A BBAT, tetrameric beta-BETA-alpha mini-protein; protein design, domain swapping, oligomerization, de novo protein; HET: DBZ; 1.20A {Synthetic} SCOP: k.14.1.1 PDB: 1sna_A* 1sne_A* 1xof_B* 1xof_A*
Probab=38.04 E-value=8.6 Score=19.01 Aligned_cols=16 Identities=25% Similarity=0.202 Sum_probs=13.3
Q ss_pred ecCHHHHHHHHHHHhc
Q psy877 17 IPNKDSANGCEIRWSS 32 (136)
Q Consensus 17 FpSY~~m~~~~~~~~~ 32 (136)
.|||.+.+++.+.+++
T Consensus 4 ipsydfadelakllrq 19 (26)
T 1sn9_A 4 IPSYDFADELAKLLRQ 19 (26)
T ss_dssp BTTBCHHHHHHHHHHH
T ss_pred CCccchHHHHHHHHHH
Confidence 5899999998888765
No 76
>1a6j_A Nitrogen regulatory IIA protein; phosphotransferase system, nitrogen regulation; 2.35A {Escherichia coli} SCOP: d.112.1.1
Probab=36.25 E-value=17 Score=25.09 Aligned_cols=25 Identities=12% Similarity=0.220 Sum_probs=21.4
Q ss_pred CccccccccC---CCcceEEEEEcCCCC
Q psy877 91 GKISEGIDFA---DNYARSVISVGIPFP 115 (136)
Q Consensus 91 Gk~SEGIDf~---d~~~r~ViivGiPyp 115 (136)
+++.+||+|. ++..+.|+++.+|=.
T Consensus 88 ~~l~~pI~~~~~d~~~V~~if~l~~~~~ 115 (163)
T 1a6j_A 88 VQLETPIAFDAIDNQPVDLLFALLVPAD 115 (163)
T ss_dssp EEEEEEECCCCTTSCCEEEEEEEEEEGG
T ss_pred EEeCCCcccCCCCCCceeEEEEEEecCC
Confidence 6788999997 567999999999873
No 77
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=35.77 E-value=31 Score=31.44 Aligned_cols=66 Identities=8% Similarity=0.131 Sum_probs=41.0
Q ss_pred cEEEEecCHHHHHHHHHHHhcCCcchhhccceeEEEcCCCchhHHHHHHHHHHHHhhhhhhcCCccCCCCCeEEEEeecC
Q psy877 12 GSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEPRRNDELENVMLGYFTAIKQAELRSSNTSEKNTGALLFTIFRG 91 (136)
Q Consensus 12 g~lvFFpSY~~m~~~~~~~~~~~~~~~l~~~k~if~E~~~~~~~~~~l~~f~~~~~~~~~~~~~~~~~~~gailfaV~~G 91 (136)
-+|||+.|-.-.+.+.+.++..++-... +-.+ ..+.+..+-. ..+ ..|+|++|. -
T Consensus 462 pvLVft~Sie~sE~Ls~~L~~~Gi~~~v-------Lnak-~~~rEa~iia-----~ag----------r~G~VtIAT--n 516 (922)
T 1nkt_A 462 PVLIGTTSVERSEYLSRQFTKRRIPHNV-------LNAK-YHEQEATIIA-----VAG----------RRGGVTVAT--N 516 (922)
T ss_dssp CEEEEESCHHHHHHHHHHHHHTTCCCEE-------ECSS-CHHHHHHHHH-----TTT----------STTCEEEEE--T
T ss_pred cEEEEECCHHHHHHHHHHHHHCCCCEEE-------ecCC-hhHHHHHHHH-----hcC----------CCCeEEEec--c
Confidence 4899999999999998888876652211 1111 1221211110 111 247888887 8
Q ss_pred ccccccccCCC
Q psy877 92 KISEGIDFADN 102 (136)
Q Consensus 92 k~SEGIDf~d~ 102 (136)
-.++|+|.+..
T Consensus 517 mAgRGtDI~l~ 527 (922)
T 1nkt_A 517 MAGRGTDIVLG 527 (922)
T ss_dssp TCSTTCCCCTT
T ss_pred hhhcCccccCC
Confidence 88999999863
No 78
>3oxp_A Phosphotransferase enzyme II, A component; structural genomics, center for structural genomics of infec diseases, csgid, pestis CO92; HET: GOL; 1.20A {Yersinia pestis}
Probab=31.94 E-value=30 Score=23.40 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=20.1
Q ss_pred CccccccccCC---CcceEEEEEcCCC
Q psy877 91 GKISEGIDFAD---NYARSVISVGIPF 114 (136)
Q Consensus 91 Gk~SEGIDf~d---~~~r~ViivGiPy 114 (136)
+++.+||+|.+ +..+.|+++.+|=
T Consensus 84 ~~l~~pI~~~~~d~~~V~lvf~la~~~ 110 (150)
T 3oxp_A 84 TVITEGVTFNAEGNDPVKLLIVLAATD 110 (150)
T ss_dssp EEEEEEECCSCGGGCSEEEEEEEECSS
T ss_pred EEeCCCeEecCCCCCeeEEEEEEecCC
Confidence 67889999964 5899999999874
No 79
>2i5u_A DNAD domain protein; structural genomics, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG, U function; HET: MSE; 1.50A {Enterococcus faecalis} SCOP: a.275.1.1
Probab=30.69 E-value=23 Score=22.10 Aligned_cols=18 Identities=22% Similarity=0.396 Sum_probs=16.0
Q ss_pred cCHHHHHHHHHHHhcCCc
Q psy877 18 PNKDSANGCEIRWSSTGL 35 (136)
Q Consensus 18 pSY~~m~~~~~~~~~~~~ 35 (136)
+|+.|++.++..|++.++
T Consensus 58 ~~~~Yi~~IL~~W~~~gi 75 (83)
T 2i5u_A 58 RNYNYINAILKDWEQRGF 75 (83)
T ss_dssp CSHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHcCC
Confidence 799999999999997654
No 80
>3urr_A PTS IIA-like nitrogen-regulatory protein PTSN; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.40A {Burkholderia thailandensis} SCOP: d.112.1.0
Probab=29.80 E-value=25 Score=23.91 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=20.6
Q ss_pred CccccccccC---CCcceEEEEEcCCCC
Q psy877 91 GKISEGIDFA---DNYARSVISVGIPFP 115 (136)
Q Consensus 91 Gk~SEGIDf~---d~~~r~ViivGiPyp 115 (136)
+++.+||+|. ++..+.|+++.+|=.
T Consensus 83 ~~l~~pI~~~~~d~~~V~~if~l~~~~~ 110 (153)
T 3urr_A 83 VRLAEPIPFEAPDGQPVSLLIFLLVPEQ 110 (153)
T ss_dssp EEEEEEECCCCTTCCCEEEEEEEEEESS
T ss_pred EEcCCCccccCCCCCceeEEEEEEccCC
Confidence 7889999996 567899999988754
No 81
>3bjv_A RMPA; alpha/beta three layer sandwich, transferase; 2.40A {Streptococcus mutans}
Probab=26.71 E-value=19 Score=24.81 Aligned_cols=24 Identities=13% Similarity=0.303 Sum_probs=19.6
Q ss_pred CccccccccCC-CcceEEEEEcCCC
Q psy877 91 GKISEGIDFAD-NYARSVISVGIPF 114 (136)
Q Consensus 91 Gk~SEGIDf~d-~~~r~ViivGiPy 114 (136)
+++.+||+|.| ...+.|+++.+|=
T Consensus 83 ~~l~~pI~~~d~~~V~~if~la~~~ 107 (161)
T 3bjv_A 83 VTLTEPVTFTDGKEVQVLLALAATS 107 (161)
T ss_dssp EEEEEEEECTTSCEEEEECCEECSS
T ss_pred EEeCCCEEcCCCCeEEEEEEEecCC
Confidence 77889999975 5688888888774
No 82
>2oqt_A Hypothetical protein SPY0176; APC29699, putative PTS IIA domain, streptococcus pyogenes M1 GAS, structural genomics, PSI-2; 2.41A {Streptococcus pyogenes serotype M1}
Probab=25.48 E-value=20 Score=24.69 Aligned_cols=24 Identities=8% Similarity=0.218 Sum_probs=19.8
Q ss_pred CccccccccCC-CcceEEEEEcCCC
Q psy877 91 GKISEGIDFAD-NYARSVISVGIPF 114 (136)
Q Consensus 91 Gk~SEGIDf~d-~~~r~ViivGiPy 114 (136)
+++.+||+|.| ...+.|+++.+|=
T Consensus 84 ~~l~~pI~~~d~~~V~~if~la~~~ 108 (162)
T 2oqt_A 84 ITLTKPVTFSDGKEVSVLLTLAATD 108 (162)
T ss_dssp EEEEEEEECTTSCEEEEECCEECSS
T ss_pred EEeCCCEECCCCCeEEEEEEEeeCC
Confidence 77889999974 5688999988884
No 83
>1a3a_A Mannitol-specific EII; phosphoenolpyruvate dependent phosphotransferase system, IIA histidine phosphorylation, phosphotransferase; 1.80A {Escherichia coli} SCOP: d.112.1.1 PDB: 1j6t_A 2few_A*
Probab=25.18 E-value=42 Score=22.45 Aligned_cols=27 Identities=30% Similarity=0.455 Sum_probs=20.3
Q ss_pred EEEeecCcccccccc---CCCcceEEEEEcCC
Q psy877 85 LFTIFRGKISEGIDF---ADNYARSVISVGIP 113 (136)
Q Consensus 85 lfaV~~Gk~SEGIDf---~d~~~r~ViivGiP 113 (136)
.+++ +++.+||+| .++..+.|+++..|
T Consensus 78 ~i~v--~~l~~pi~~~~~~~~~V~~if~la~~ 107 (148)
T 1a3a_A 78 GVVF--CQYPEGVRFGEEEDDIARLVIGIAAR 107 (148)
T ss_dssp EEEE--EEEEEEEECSSSTTCEEEEEEEEECS
T ss_pred eEEE--EEeCCCEEecCCCCCeEEEEEEEecC
Confidence 3444 778999999 45678888888864
No 84
>3lf6_A Putative phosphotransferase system; epitope-scaffold, immune system; 1.90A {Artificial gene} SCOP: d.112.1.1 PDB: 1xiz_A
Probab=24.89 E-value=39 Score=23.38 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=20.7
Q ss_pred CccccccccC---CC----cceEEEEEcCCCC
Q psy877 91 GKISEGIDFA---DN----YARSVISVGIPFP 115 (136)
Q Consensus 91 Gk~SEGIDf~---d~----~~r~ViivGiPyp 115 (136)
+++.+||+|. ++ ..+.|+++.+|-.
T Consensus 89 ~~l~~pI~~~~~d~~~~~~~V~lif~la~~~~ 120 (161)
T 3lf6_A 89 GILAEPVNFEDAGGEPDPVPVRVVFMLALGNW 120 (161)
T ss_dssp EEEEEEEEECBTTCCSSCEEEEEEEEEECSCG
T ss_pred EEeCCCeEeecCCCCCCCCcccEEEEEEeCCc
Confidence 7788999997 44 7999999998864
No 85
>1t07_A Hypothetical UPF0269 protein PA5148; structural genomics, APC5047, conserved hypothetical protein, PSI, protein structure initiative; HET: MSE; 1.80A {Pseudomonas aeruginosa} SCOP: d.279.1.1
Probab=23.74 E-value=28 Score=22.98 Aligned_cols=17 Identities=12% Similarity=-0.001 Sum_probs=14.7
Q ss_pred EEEEeecCccccccccC
Q psy877 84 LLFTIFRGKISEGIDFA 100 (136)
Q Consensus 84 ilfaV~~Gk~SEGIDf~ 100 (136)
..||+-=++-.||+||+
T Consensus 6 ~V~C~kl~kE~eGLd~~ 22 (94)
T 1t07_A 6 TVMCRKYHEELPGLDRP 22 (94)
T ss_dssp EEEETTTTEEEEBCSSC
T ss_pred eeehHhhCCcccCCCCC
Confidence 57888889999999986
No 86
>1xs8_A UPF0269 protein YGGX; helix-turn-helix, metal transport; NMR {Salmonella typhimurium} SCOP: d.279.1.1 PDB: 1yhd_A
Probab=22.24 E-value=28 Score=22.84 Aligned_cols=17 Identities=29% Similarity=0.571 Sum_probs=14.2
Q ss_pred EEEEeecCccccccccC
Q psy877 84 LLFTIFRGKISEGIDFA 100 (136)
Q Consensus 84 ilfaV~~Gk~SEGIDf~ 100 (136)
..||+-=|+-.||+||+
T Consensus 4 ~V~C~kl~ke~eGLd~~ 20 (91)
T 1xs8_A 4 TIFCTYLQRDAEGQDFQ 20 (91)
T ss_dssp EEECTTTSSEEEBCCCC
T ss_pred eeehHhhCCcCCCCCCC
Confidence 46788889999999985
No 87
>3t43_A HIV epitope-scaffold 4E10_1XIZA_S0_006_C; putative phosphotransferase system, transferase; 1.95A {Artificial gene}
Probab=21.73 E-value=49 Score=23.11 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=19.8
Q ss_pred CccccccccCC---C----cceEEEEEcCCC
Q psy877 91 GKISEGIDFAD---N----YARSVISVGIPF 114 (136)
Q Consensus 91 Gk~SEGIDf~d---~----~~r~ViivGiPy 114 (136)
+++.+||+|.+ + ..+.|+++.+|-
T Consensus 64 ~~lk~pI~f~~~d~~~~~~~V~lvflLa~~~ 94 (162)
T 3t43_A 64 GILAEPVNFEDAGGEPDPVPVRVVFMLALGN 94 (162)
T ss_dssp EEEEEEEEECBTTCCSSCEEEEEEEEEECSS
T ss_pred EEeCCCeEecCCCCCCCCCcccEEEEEEcCC
Confidence 67889999963 3 689999999885
No 88
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A
Probab=20.82 E-value=1.3e+02 Score=22.46 Aligned_cols=30 Identities=23% Similarity=0.380 Sum_probs=24.8
Q ss_pred EEEEecCHHHHHHHHHHHhcCCcchhhccceeEEEcC
Q psy877 13 STARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEP 49 (136)
Q Consensus 13 ~lvFFpSY~~m~~~~~~~~~~~~~~~l~~~k~if~E~ 49 (136)
++++.++-...+.+.+.|++.++ +.+|.|.
T Consensus 299 ~ial~~~~~~~~~i~~~~~~~Gi-------~~~y~~~ 328 (335)
T 3gon_A 299 GIALSFDAQSTKTLKNRWADLGI-------ELLYQER 328 (335)
T ss_dssp EEEEECSHHHHHHHHHHHHHTTC-------EEEEEEE
T ss_pred EEEEECCHHHHHHHHHHHHHCCC-------cEEeehh
Confidence 68888899999999999998875 5677764
Done!