RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy877
         (136 letters)



>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer
           aging, hydrolase; HET: FLC; 2.00A {Sulfolobus
           acidocaldarius} PDB: 3crw_1*
          Length = 551

 Score = 70.8 bits (173), Expect = 1e-15
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 78  EKNTGALLFTIFRGKISEGIDFADN---YARSVISVGIPFPSIQDEKVKLKRSYNDTHAQ 134
             N   L+ ++ +GK++EGI+  +N       V+ VGIP+P   D    L +  +    +
Sbjct: 434 SANNKVLIGSVGKGKLAEGIELRNNDRSLISDVVIVGIPYPPPDDYLKILAQRVSLKMNR 493

Query: 135 K 135
           +
Sbjct: 494 E 494


>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
          Length = 540

 Score = 70.8 bits (173), Expect = 2e-15
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 79  KNTGALLFTIFRGKISEGIDFAD--NYARSVISVGIPFPSIQDEKVKLKRSYNDTHAQKK 136
           K    L+  + R K SEG++F +  N   S++  G+P+P++ D+ V+ +         K 
Sbjct: 426 KTGKYLVMLVMRAKESEGVEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKD 485


>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase,
           nucleotide excision repair,; 2.20A {Thermoplasma
           acidophilum} PDB: 2vsf_A*
          Length = 620

 Score = 63.6 bits (155), Expect = 5e-13
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 79  KNTGALLFTIFRGKISEGIDFADNYARSVISVGIPFPSIQDEKVKLKRSYND 130
           +     +F +  G++SEGI+F  N    +I  G+PFP       +    Y +
Sbjct: 492 RRDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFPRPDAI-NRSLFDYYE 542


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 30.4 bits (68), Expect = 0.16
 Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 2/42 (4%)

Query: 8   WLIRGSTARIPNKDSANGCEIRWSSTGLMDRIREVKSVYCEP 49
                   +IP  D+ +G ++R  S  + +RI  V  +   P
Sbjct: 448 VSFNAKDIQIPVYDTFDGSDLRVLSGSISERI--VDCIIRLP 487


>4eaz_C Transcription cofactor vestigial-like protein 1; immunoglobulin,
           beta sandwich, VGLL1; 2.80A {Mus musculus}
          Length = 60

 Score = 25.0 bits (53), Expect = 3.6
 Identities = 11/40 (27%), Positives = 25/40 (62%), Gaps = 2/40 (5%)

Query: 77  SEKNTGALLFTIFRGKISEGIDFADNYARSVISVGIPFPS 116
           +E N G+++FT F G I+  +D  ++++R++ ++G     
Sbjct: 16  TEWNAGSVIFTYFEGDINSMVD--EHFSRALRNMGSSHHH 53


>3g8z_A Protein of unknown function with cystatin-like FO; NP_639274.1,
           snoal-like polyketide cyclase; HET: MSE; 1.90A
           {Xanthomonas campestris PV}
          Length = 148

 Score = 25.0 bits (54), Expect = 8.3
 Identities = 10/60 (16%), Positives = 18/60 (30%), Gaps = 6/60 (10%)

Query: 42  VKSVYCEPRRNDELENVMLGYFTAIKQAELRSSNTSEKNTGALLFTIFRGKISEGIDFAD 101
                 +          +   F+       +++  + K  G  L  I  GKI E   F+ 
Sbjct: 84  FAISRADDYMASGDWVAITLEFSG------QANGVTLKQAGVDLLRIEDGKIVEVRLFSA 137


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.317    0.133    0.388 

Gapped
Lambda     K      H
   0.267   0.0426    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,966,162
Number of extensions: 103350
Number of successful extensions: 141
Number of sequences better than 10.0: 1
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 7
Length of query: 136
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 52
Effective length of database: 4,356,429
Effective search space: 226534308
Effective search space used: 226534308
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)