BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8771
(904 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DLH|A Chain A, Solution Structure Of The Second Fn3 Domain Of Human
Receptor-Type Tyrosine-Protein Phosphatase Delta
Length = 121
Score = 116 bits (291), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 55/115 (47%), Positives = 79/115 (68%)
Query: 464 GEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQ 523
G ++ P+ +T + P +APRDVQ R LSS+T+++QW EPE PNGQI GY+VYYT D
Sbjct: 1 GSSGSSGPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEPEEPNGQIQGYRVYYTMDP 60
Query: 524 SLPMSAWETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQG 578
+ ++ W V ++Q+TTI +L P Y+++V AFTS+G GPLS+ + V TQ G
Sbjct: 61 TQHVNNWMKHNVADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVITQTG 115
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 58/124 (46%), Gaps = 20/124 (16%)
Query: 277 GRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITA--------- 327
G S P + T E P +APRDVQ R LSS+T+++QW EPE PNGQI
Sbjct: 1 GSSGSSGPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEPEEPNGQIQGYRVYYTMDP 60
Query: 328 --------KHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYGKT 379
KH+ + + ++ L P Y + + A + G+G + I V T Q G
Sbjct: 61 TQHVNNWMKHN--VADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVIT-QTGSG 117
Query: 380 PGFG 383
P G
Sbjct: 118 PSSG 121
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/32 (68%), Positives = 27/32 (84%)
Query: 33 PGTAPRDVQVRPLSSSTMVIQWDEPETPNGQI 64
P +APRDVQ R LSS+T+++QW EPE PNGQI
Sbjct: 18 PSSAPRDVQARMLSSTTILVQWKEPEEPNGQI 49
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 59/123 (47%), Gaps = 19/123 (15%)
Query: 699 GEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHI----VYYKL 754
G ++ P+ +T + P + P++V LSST+I + W+ P E NG I VYY +
Sbjct: 1 GSSGSSGPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEP--EEPNGQIQGYRVYYTM 58
Query: 755 ---QFVET--GRSDSEASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITI 809
Q V + +++ I T+ N L Y + VLA TSIGDGP S I +
Sbjct: 59 DPTQHVNNWMKHNVADSQITTIGN--------LVPQKTYSVKVLAFTSIGDGPLSSDIQV 110
Query: 810 RTH 812
T
Sbjct: 111 ITQ 113
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 568 SAPVLVKTQQGVP-SQPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYW 617
S PVL +T + P S PRD++A + T + + W +P I Y +Y+
Sbjct: 6 SGPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEPEEPNGQIQGYRVYY 56
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 12/103 (11%)
Query: 203 APLDVKISEVTATSVRLDWTYPSE-------TLLYYVIQYKPKAANTPYSEISGIITTYY 255
AP DV+ +++T++ + W P E +YY + N ++ T
Sbjct: 21 APRDVQARMLSSTTILVQWKEPEEPNGQIQGYRVYYTMDPTQHVNNWMKHNVADSQIT-- 78
Query: 256 TVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAP 298
T+ NL P Y ++A ++G GP SS + T+ G+ P
Sbjct: 79 TIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVI---TQTGSGP 118
Score = 29.3 bits (64), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 7/96 (7%)
Query: 622 AKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKH-----HRRIGLVET 676
+ PRD++A + T + + W +P I Y +Y+ T +H + +
Sbjct: 20 SAPRDVQARMLSSTTILVQWKEPEEPNGQIQGYRVYY--TMDPTQHVNNWMKHNVADSQI 77
Query: 677 YSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTK 712
++ L P Y + + A + G+G + I V T+
Sbjct: 78 TTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVITQ 113
>pdb|2EDX|A Chain A, Solution Structures Of The Fn3 Domain Of Human Receptor-
Type Tyrosine-Protein Phosphatase F
Length = 134
Score = 96.7 bits (239), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 68/121 (56%), Gaps = 2/121 (1%)
Query: 699 GEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVE 758
G ++ I RT Q P APPQ V C + ST++R+SW PPP + NG I Y + +
Sbjct: 1 GSSGSSGTIEARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEA 60
Query: 759 TGRSDSEASIVT--LKNQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDP 816
D +V + +S+ L L+KWTEYR+WV A T +G GP S P+ +RT ED P
Sbjct: 61 VDGEDRGRHVVDGISREHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTDEDVP 120
Query: 817 S 817
S
Sbjct: 121 S 121
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 62/126 (49%), Gaps = 9/126 (7%)
Query: 464 GEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEP--ETPNGQITGYKVYYTQ 521
G ++ I RT Q P P+ V + S+T+ + W P ++ NG IT Y V Y
Sbjct: 1 GSSGSSGTIEARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAY-- 58
Query: 522 DQSLPMSAWETQVVDN----NQLTTISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQ 577
+++ VVD + + L T Y + V+A T VGPGP S+PVLV+T +
Sbjct: 59 -EAVDGEDRGRHVVDGISREHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTDE 117
Query: 578 GVPSQP 583
VPS P
Sbjct: 118 DVPSGP 123
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 6/114 (5%)
Query: 622 AKPRDLRAVDIQETAVTLAWSKPTHSGEN--IISYELYWNDTYAKAKHHRRIGLVE---- 675
A P+ + V + T V ++W P N I Y + + + + + +
Sbjct: 20 APPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGEDRGRHVVDGISREHS 79
Query: 676 TYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQNVSCEPLS 729
++ L GL T Y +W+ A + G G + P+ VRT + VP PP+ V P S
Sbjct: 80 SWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTDEDVPSGPPRKVESGPSS 133
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 8/112 (7%)
Query: 204 PLDVKISEVTATSVRLDWTYP-----SETLLYYVIQYKP-KAANTPYSEISGIITTY--Y 255
P V + +T+VR+ W P + + Y + Y+ + + GI + +
Sbjct: 22 PQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGEDRGRHVVDGISREHSSW 81
Query: 256 TVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLS 307
+ L +TEY ++ A ++G GP SSP ++ T E P PR V+ P S
Sbjct: 82 DLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTDEDVPSGPPRKVESGPSS 133
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 18/105 (17%)
Query: 289 TGETEPGTAPRDVQVRPLSSSTMVIQWDEP--ETPNGQITA-------------KHHRRI 333
T ++ P P+ V + S+T+ + W P ++ NG IT H
Sbjct: 13 TAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGEDRGRHVVD 72
Query: 334 GLVETYS---LTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQ 375
G+ +S L GL T Y +W+ A + G G + P+ VRT +
Sbjct: 73 GISREHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTDE 117
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 451 TLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLS 494
T Y +W+ A + G G + P+ VRT + P PR V+ P S
Sbjct: 90 TEYRVWVRAHTDVGPGPESSPVLVRTDEDVPSGPPRKVESGPSS 133
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/92 (53%), Positives = 65/92 (70%), Gaps = 2/92 (2%)
Query: 100 VRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRNV 159
V+ V P+FSI P + E+M +N++CVAVGSPMP+VKW +G +LTP+D +PVGRNV
Sbjct: 201 VQNVAPRFSILPMSH-EIMPGGNVNITCVAVGSPMPYVKWMQGAE-DLTPEDDMPVGRNV 258
Query: 160 LTLDRVTESENYTCIAASVLGVIETSTIVKVQ 191
L L V +S NYTC+A S LGVIE + V+
Sbjct: 259 LELTDVKDSANYTCVAMSSLGVIEAVAQITVK 290
>pdb|2DJU|A Chain A, Solution Structures Of The Fn3 Domain Of Human Receptor-
Type Tyrosine-Protein Phosphatase F
Length = 106
Score = 87.0 bits (214), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 60/92 (65%), Gaps = 1/92 (1%)
Query: 201 PVAPLDVKISEVTATSVRLDW-TYPSETLLYYVIQYKPKAANTPYSEISGIITTYYTVRN 259
P P+D+ ++E TATSV L W + SE + YY IQY+ P+ E+ G+ TT Y++
Sbjct: 8 PKPPIDLVVTETTATSVTLTWDSGNSEPVTYYGIQYRAAGTEGPFQEVDGVATTRYSIGG 67
Query: 260 LSPYTEYEFYIIAVNNLGRGPPSSPAVITTGE 291
LSP++EY F ++AVN++GRGPPS TGE
Sbjct: 68 LSPFSEYAFRVLAVNSIGRGPPSEAVRARTGE 99
Score = 36.6 bits (83), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 719 PPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFV 778
PP ++ ++TS+ ++W+ E + YY +Q+ G ++ V T +
Sbjct: 10 PPIDLVVTETTATSVTLTWDSGNSE----PVTYYGIQYRAAG-TEGPFQEVDGVATTRYS 64
Query: 779 LDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHE 813
+ L ++EY VLA SIG GP S + RT E
Sbjct: 65 IGGLSPFSEYAFRVLAVNSIGRGPPSEAVRARTGE 99
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 16/99 (16%)
Query: 485 PRDVQVRPLSSSTMVIQWD----EPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQL 540
P D+ V +++++ + WD EP T YY + Q VD
Sbjct: 11 PIDLVVTETTATSVTLTWDSGNSEPVT----------YYGIQYRAAGTEGPFQEVDGVAT 60
Query: 541 T--TISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQ 577
T +I L+P + Y RV A S+G GP S V +T +
Sbjct: 61 TRYSIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRARTGE 99
>pdb|2EDE|A Chain A, Solution Structure Of The Sixth Fibronectin Type Iii
Domain Of Human Netrin Receptor Dcc
Length = 114
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 59/100 (59%), Gaps = 3/100 (3%)
Query: 481 PGTAPRDVQV--RPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNN 538
P +AP+D+ V R +++ W P NG+IT Y ++YT D+++P+ W + + +
Sbjct: 8 PTSAPKDLTVITREGKPRAVIVSWQPPLEANGKITAYILFYTLDKNIPIDDWIMETISGD 67
Query: 539 QLT-TISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQ 577
+LT I DL T+Y R+QA S G GPLS P+L +T +
Sbjct: 68 RLTHQIMDLNLDTMYYFRIQARNSKGVGPLSDPILFRTLK 107
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 18/98 (18%)
Query: 294 PGTAPRDVQV--RPLSSSTMVIQWDEPETPNGQITA-----KHHRRI-----------GL 335
P +AP+D+ V R +++ W P NG+ITA + I G
Sbjct: 8 PTSAPKDLTVITREGKPRAVIVSWQPPLEANGKITAYILFYTLDKNIPIDDWIMETISGD 67
Query: 336 VETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRT 373
T+ + L +T+YY + A++ +G G + PI RT
Sbjct: 68 RLTHQIMDLNLDTMYYFRIQARNSKGVGPLSDPILFRT 105
>pdb|1X5H|A Chain A, The Solution Structure Of The Third Fibronectin Type Iii
Domain Of Human Neogenin
Length = 132
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 60/120 (50%)
Query: 699 GEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVE 758
G ++ + VRT VP A PQN+S E +S SI I W+PP NG I YK+++ +
Sbjct: 1 GSSGSSGDVAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRK 60
Query: 759 TGRSDSEASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDPSE 818
R + Q S +++ L + TEY V A T G GP++ ++ T E D E
Sbjct: 61 ASRKSDVTETLVSGTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDWLSAETFESDLDE 120
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 464 GEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWD--EPETPNGQITGYKVYYTQ 521
G ++ + VRT P AP+++ + +S +++I W P T NGQITGYK+ Y +
Sbjct: 1 GSSGSSGDVAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRY-R 59
Query: 522 DQSLPMSAWETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVGPGP 566
S ET V I L T Y RV A T G GP
Sbjct: 60 KASRKSDVTETLVSGTQLSQLIEGLDRGTEYNFRVAALTINGTGP 104
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 16/89 (17%)
Query: 294 PGTAPRDVQVRPLSSSTMVIQWD--EPETPNGQITA------KHHRRIGLVETYS----- 340
P AP+++ + +S +++I W P T NGQIT K R+ + ET
Sbjct: 18 PSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTETLVSGTQL 77
Query: 341 ---LTGLYPNTLYYIWLAAQSPRGEGATT 366
+ GL T Y +AA + G G T
Sbjct: 78 SQLIEGLDRGTEYNFRVAALTINGTGPAT 106
>pdb|1VA9|A Chain A, Solution Structure Of The Second Fniii Domain Of Dscaml1
Protein
Length = 122
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 62/111 (55%), Gaps = 4/111 (3%)
Query: 711 TKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETG-RSDSEASIV 769
T++ P PP +V+ +P++S SI+++W+ P E NG I Y++ + E S+ + SIV
Sbjct: 10 TEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIV 69
Query: 770 TLK---NQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDPS 817
+K + + LD LKK+ +Y + V A G GPSS I T E PS
Sbjct: 70 EMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATTLESGPS 120
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 57/111 (51%), Gaps = 5/111 (4%)
Query: 476 TKQYEPGTAPRDVQVRPLSSSTMVIQWDEP--ETPNGQITGYKVYYTQDQ---SLPMSAW 530
T++ P P DV ++P++S ++ + W P E NG I GY++ Y ++ + S
Sbjct: 10 TEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIV 69
Query: 531 ETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPS 581
E + ++++ T+ +L Y + VQAF G GP S+ + T + PS
Sbjct: 70 EMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATTLESGPS 120
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 10/104 (9%)
Query: 204 PLDVKISEVTATSVRLDWTYPSETLLY-----YVIQYKPKA--ANTPYSEISGIIT---T 253
P+DV + VT+ S+++ W P + L Y I Y+ + +N YS + T
Sbjct: 19 PMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMKATGDSE 78
Query: 254 YYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTA 297
YT+ NL + +Y + A N G GP SS TT E+ P +
Sbjct: 79 VYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATTLESGPSSG 122
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 20/113 (17%)
Query: 289 TGETEPGTAPRDVQVRPLSSSTMVIQWDEPET--------------------PNGQITAK 328
T E P P DV ++P++S ++ + W P+ NGQ +
Sbjct: 10 TEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIV 69
Query: 329 HHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYGKTPG 381
+ G E Y+L L Y + + A + G G ++ I T + G + G
Sbjct: 70 EMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATTLESGPSSG 122
>pdb|2ED9|A Chain A, Solution Structure Of The Third Fibronectin Type Iii
Domain Of Human Netrin Receptor Dcc
Length = 124
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 63/117 (53%), Gaps = 4/117 (3%)
Query: 699 GEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVE 758
G G +T I V T VP APPQNVS E ++S SI++SW PPP NG I YK++ +
Sbjct: 11 GPGVSTDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFITGYKIRHRK 70
Query: 759 TGRSDSEASIVTLK-NQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHED 814
T R + TL+ N ++ L+K ++Y V A T G GP S T T E+
Sbjct: 71 TTR---RGEMETLEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNWYTAETPEN 124
Score = 36.2 bits (82), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 7/106 (6%)
Query: 464 GEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEP--ETPNGQITGYKVYYTQ 521
G G +T I V T P P++V + ++S ++ + W P T NG ITGYK+ + +
Sbjct: 11 GPGVSTDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFITGYKIRHRK 70
Query: 522 DQSLPMSAWETQVVD-NNQLTTISDLTPHTIYTIRVQAFTSVGPGP 566
E + ++ NN + L + Y+ +V A T G GP
Sbjct: 71 T----TRRGEMETLEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGP 112
>pdb|3P4L|A Chain A, Crystal Structure Of A Hemojuvelin-Binding Fragment Of
Neogenin
Length = 211
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 69/135 (51%), Gaps = 7/135 (5%)
Query: 446 ALYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYE--PGTAPRDVQV--RPLSSSTMVIQ 501
L PNTLY + +G ++T + +E P + P+DV V + T+++
Sbjct: 70 GLKPNTLYE--FSVMVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVVSKEGKPKTIIVN 127
Query: 502 WDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLT-TISDLTPHTIYTIRVQAFT 560
W P NG+ITGY +YY+ D + + W + V N+LT I +LT T Y ++QA
Sbjct: 128 WQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTLDTPYYFKIQARN 187
Query: 561 SVGPGPLSAPVLVKT 575
S G GP+S V +T
Sbjct: 188 SKGMGPMSEAVQFRT 202
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 85/196 (43%), Gaps = 27/196 (13%)
Query: 204 PLDVKISEVTATSVRLDW---TYPSETLL----YYVIQYKPKA-ANTPYSEISGIITTYY 255
P+ V+ S ++ ++R+ W + P + YY +++K ANT Y + T Y
Sbjct: 8 PVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANAT-TLSY 66
Query: 256 TVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQV--RPLSSSTMVI 313
V L P T YEF ++ S A TT E P + P+DV V + T+++
Sbjct: 67 LVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVVSKEGKPKTIIV 126
Query: 314 QWDEPETPNGQIT-----------AKHHR-----RIGLVETYSLTGLYPNTLYYIWLAAQ 357
W P NG+IT A+ H +G T+ + L +T YY + A+
Sbjct: 127 NWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTLDTPYYFKIQAR 186
Query: 358 SPRGEGATTPPIPVRT 373
+ +G G + + RT
Sbjct: 187 NSKGMGPMSEAVQFRT 202
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 67/153 (43%), Gaps = 6/153 (3%)
Query: 663 AKAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQN 722
A K+ +Y +TGL PNTLY + R + T + VP +PP++
Sbjct: 52 ANTKYKNANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELVPTSPPKD 111
Query: 723 VSC--EPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIV--TLKNQTSFV 778
V+ + +I ++W+PP +NG I Y + + ++ ++ + N+ +
Sbjct: 112 VTVVSKEGKPKTIIVNWQPP--SEANGKITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQ 169
Query: 779 LDELKKWTEYRIWVLAGTSIGDGPSSYPITIRT 811
+ EL T Y + A S G GP S + RT
Sbjct: 170 IQELTLDTPYYFKIQARNSKGMGPMSEAVQFRT 202
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 60/159 (37%), Gaps = 20/159 (12%)
Query: 481 PGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQV-----V 535
P P VQ LS T+ I W + P Q YYT W+T +
Sbjct: 4 PMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYT-------VRWKTNIPANTKY 56
Query: 536 DNNQLTTIS----DLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVP-SQPRDLRAVD 590
N TT+S L P+T+Y V S T + VP S P+D+ V
Sbjct: 57 KNANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVVS 116
Query: 591 IQE--TAVTLAWSKPTHSGENIISYELYWN-DTYAKPRD 626
+ + + W P+ + I Y +Y++ D A+ D
Sbjct: 117 KEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHD 155
>pdb|1X5Z|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of
Human Protein Tyrosine Phosphatase, Receptor Type, D
Isoform 4 Variant
Length = 115
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Query: 622 AKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVETYSLTG 681
+P + +A ET++ L+W+ P + I +YEL + D + I +Y L G
Sbjct: 19 GQPLNFKAEPESETSILLSWTPPRS--DTIANYELVYKDGEHGEEQRITIEPGTSYRLQG 76
Query: 682 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQ 713
L PN+LYY LAA+SP+G GA+T I RT Q
Sbjct: 77 LKPNSLYYFRLAARSPQGLGASTAEISARTMQ 108
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 10/88 (11%)
Query: 298 PRDVQVRPLSSSTMVIQWDEPET----------PNGQITAKHHRRIGLVETYSLTGLYPN 347
P + + P S +++++ W P + +G+ + I +Y L GL PN
Sbjct: 21 PLNFKAEPESETSILLSWTPPRSDTIANYELVYKDGEHGEEQRITIEPGTSYRLQGLKPN 80
Query: 348 TLYYIWLAAQSPRGEGATTPPIPVRTKQ 375
+LYY LAA+SP+G GA+T I RT Q
Sbjct: 81 SLYYFRLAARSPQGLGASTAEISARTMQ 108
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 31/53 (58%)
Query: 383 GEQAAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQ 435
GE + I +Y L GL PN+LYY LAA+SP+G GA+T I RT Q
Sbjct: 56 GEHGEEQRITIEPGTSYRLQGLKPNSLYYFRLAARSPQGLGASTAEISARTMQ 108
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 7/115 (6%)
Query: 699 GEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVE 758
G ++ I V T+ VPG P N EP S TSI +SW PP RS+ I Y+L + +
Sbjct: 1 GSSGSSGDIQVITQTGVPGQP-LNFKAEPESETSILLSWTPP---RSD-TIANYELVYKD 55
Query: 759 TGRSDSEASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHE 813
E +T++ TS+ L LK + Y + A + G G S+ I+ RT +
Sbjct: 56 G--EHGEEQRITIEPGTSYRLQGLKPNSLYYFRLAARSPQGLGASTAEISARTMQ 108
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 24/34 (70%)
Query: 445 QALYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQ 478
Q L PN+LYY LAA+SP+G GA+T I RT Q
Sbjct: 75 QGLKPNSLYYFRLAARSPQGLGASTAEISARTMQ 108
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 200 LPVAPLDVKISEVTATSVRLDWTYP-SETLLYYVIQYKPKAANTPYSEISGIITTYYTVR 258
+P PL+ K + TS+ L WT P S+T+ Y + YK + I+ T Y ++
Sbjct: 17 VPGQPLNFKAEPESETSILLSWTPPRSDTIANYELVYK-DGEHGEEQRITIEPGTSYRLQ 75
Query: 259 NLSPYTEYEFYIIAVNNLGRG 279
L P + Y F + A + G G
Sbjct: 76 GLKPNSLYYFRLAARSPQGLG 96
>pdb|1X5K|A Chain A, The Solution Structure Of The Sixth Fibronectin Type Iii
Domain Of Human Neogenin
Length = 124
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 54/98 (55%), Gaps = 3/98 (3%)
Query: 481 PGTAPRDVQV--RPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNN 538
P + P+DV V + T+++ W P NG+ITGY +YY+ D + + W + V N
Sbjct: 18 PTSPPKDVTVVSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPVVGN 77
Query: 539 QLT-TISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKT 575
+LT I +LT T Y ++QA S G GP+S V +T
Sbjct: 78 RLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRT 115
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Query: 711 TKQYVPGAPPQNVSC--EPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASI 768
T + VP +PP++V+ + +I ++W+PP +NG I Y + + ++ +
Sbjct: 13 TFELVPTSPPKDVTVVSKEGKPKTIIVNWQPP--SEANGKITGYIIYYSTDVNAEIHDWV 70
Query: 769 V--TLKNQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRT 811
+ + N+ + + EL T Y + A S G GP S + RT
Sbjct: 71 IEPVVGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRT 115
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 18/115 (15%)
Query: 277 GRGPPSSPAVITTGETEPGTAPRDVQV--RPLSSSTMVIQWDEPETPNGQIT-------- 326
G S A TT E P + P+DV V + T+++ W P NG+IT
Sbjct: 1 GSSGSSGTAHGTTFELVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEANGKITGYIIYYST 60
Query: 327 ---AKHHR-----RIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRT 373
A+ H +G T+ + L +T YY + A++ +G G + + RT
Sbjct: 61 DVNAEIHDWVIEPVVGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRT 115
>pdb|3F7P|C Chain C, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
pdb|3F7P|D Chain D, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
pdb|3F7P|E Chain E, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
Length = 248
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 80/191 (41%), Gaps = 14/191 (7%)
Query: 438 KTPGFGEQALYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSST 497
K P LYP Y + + A +GEG + + RT Q P + P + +SS+
Sbjct: 55 KVPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVP-SEPGRLAFNVVSSTV 113
Query: 498 MVIQWDEPETPNGQITGYKVYY--TQDQSLPMSAWETQVVDN--NQLTTISDLTPHTIYT 553
+ W EP NG+IT Y+V Y D + P+ + +VDN N++ I +L Y
Sbjct: 114 TQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYR 173
Query: 554 IRVQAFTSVGPGPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLAWSKPTHSGENIISY 613
V+A G GP ++ Q P +P + + SGE+ S+
Sbjct: 174 YTVKARNGAGWGPEREAIINLATQ--PKRP-------MSIPIIPDIPIVDAQSGEDYDSF 224
Query: 614 ELYWNDTYAKP 624
+Y +D P
Sbjct: 225 LMYSDDVLRSP 235
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 69/136 (50%), Gaps = 9/136 (6%)
Query: 484 APRDVQVRPLSSSTMVIQWDEPETPNGQITGYKV-YYTQDQSLPMSAWETQVVDNNQLTT 542
AP++ + S + W P+G+ GY+V Y+ Q S E ++D+ +
Sbjct: 7 APQNPNAKAAGSRKIHFNW---LPPSGKPMGYRVKYWIQGDS----ESEAHLLDSKVPSV 59
Query: 543 -ISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLAWS 601
+++L P+ Y ++V A+ + G GP S+ V +T Q VPS+P L + T L+W+
Sbjct: 60 ELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSEPGRLAFNVVSSTVTQLSWA 119
Query: 602 KPTHSGENIISYELYW 617
+P + I +YE+ +
Sbjct: 120 EPAETNGEITAYEVCY 135
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 53/99 (53%), Gaps = 6/99 (6%)
Query: 720 PQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFVL 779
PQN + + S I +W PP +G + Y++++ G S+SEA ++ K S L
Sbjct: 8 PQNPNAKAAGSRKIHFNWLPP-----SGKPMGYRVKYWIQGDSESEAHLLDSK-VPSVEL 61
Query: 780 DELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDPSE 818
L + +Y + V A + G+GP S ++ RTH++ PSE
Sbjct: 62 TNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSE 100
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 67/151 (44%), Gaps = 8/151 (5%)
Query: 657 YWNDTYAKAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVP 716
YW ++++ H V + LT LYP Y + + A +GEG + + RT Q VP
Sbjct: 39 YWIQGDSESEAHLLDSKVPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVP 98
Query: 717 GAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDS-----EASIVTL 771
P + ++ +SST ++SW P +NG I Y++ + + + +V
Sbjct: 99 SEPGR-LAFNVVSSTVTQLSWAEP--AETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDN 155
Query: 772 KNQTSFVLDELKKWTEYRIWVLAGTSIGDGP 802
+++ L++ YR V A G GP
Sbjct: 156 PKNRMLLIENLRESQPYRYTVKARNGAGWGP 186
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 1/125 (0%)
Query: 203 APLDVKISEVTATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEISGIITTYYTVRNLSP 262
AP + + + +W PS + Y ++Y + + + + + NL P
Sbjct: 7 APQNPNAKAAGSRKIHFNWLPPSGKPMGYRVKYWIQGDSESEAHLLDSKVPSVELTNLYP 66
Query: 263 YTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEPETPN 322
Y +YE + A G GP SS T + P + P + +SS+ + W EP N
Sbjct: 67 YCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVP-SEPGRLAFNVVSSTVTQLSWAEPAETN 125
Query: 323 GQITA 327
G+ITA
Sbjct: 126 GEITA 130
>pdb|3F7R|A Chain A, First Pair Of Fibronectin Type Iii Domains And Part Of The
Connecting Segment Of The Integrin Beta4
Length = 249
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 80/191 (41%), Gaps = 14/191 (7%)
Query: 438 KTPGFGEQALYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSST 497
K P LYP Y + + A +GEG + + RT Q P + P + +SS+
Sbjct: 56 KVPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVP-SEPGRLAFNVVSSTV 114
Query: 498 MVIQWDEPETPNGQITGYKVYY--TQDQSLPMSAWETQVVDN--NQLTTISDLTPHTIYT 553
+ W EP NG+IT Y+V Y D + P+ + +VDN N++ I +L Y
Sbjct: 115 TQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYR 174
Query: 554 IRVQAFTSVGPGPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLAWSKPTHSGENIISY 613
V+A G GP ++ Q P +P + + SGE+ S+
Sbjct: 175 YTVKARNGAGWGPEREAIINLATQ--PKRP-------MSIPIIPDIPIVDAQSGEDYDSF 225
Query: 614 ELYWNDTYAKP 624
+Y +D P
Sbjct: 226 LMYSDDVLRSP 236
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 69/136 (50%), Gaps = 9/136 (6%)
Query: 484 APRDVQVRPLSSSTMVIQWDEPETPNGQITGYKV-YYTQDQSLPMSAWETQVVDNNQLTT 542
AP++ + S + W P+G+ GY+V Y+ Q S E ++D+ +
Sbjct: 8 APQNPNAKAAGSRKIHFNW---LPPSGKPMGYRVKYWIQGDS----ESEAHLLDSKVPSV 60
Query: 543 -ISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLAWS 601
+++L P+ Y ++V A+ + G GP S+ V +T Q VPS+P L + T L+W+
Sbjct: 61 ELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSEPGRLAFNVVSSTVTQLSWA 120
Query: 602 KPTHSGENIISYELYW 617
+P + I +YE+ +
Sbjct: 121 EPAETNGEITAYEVCY 136
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 53/99 (53%), Gaps = 6/99 (6%)
Query: 720 PQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFVL 779
PQN + + S I +W PP +G + Y++++ G S+SEA ++ K S L
Sbjct: 9 PQNPNAKAAGSRKIHFNWLPP-----SGKPMGYRVKYWIQGDSESEAHLLDSK-VPSVEL 62
Query: 780 DELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDPSE 818
L + +Y + V A + G+GP S ++ RTH++ PSE
Sbjct: 63 TNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSE 101
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 67/151 (44%), Gaps = 8/151 (5%)
Query: 657 YWNDTYAKAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVP 716
YW ++++ H V + LT LYP Y + + A +GEG + + RT Q VP
Sbjct: 40 YWIQGDSESEAHLLDSKVPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVP 99
Query: 717 GAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDS-----EASIVTL 771
P + ++ +SST ++SW P +NG I Y++ + + + +V
Sbjct: 100 SEPGR-LAFNVVSSTVTQLSWAEP--AETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDN 156
Query: 772 KNQTSFVLDELKKWTEYRIWVLAGTSIGDGP 802
+++ L++ YR V A G GP
Sbjct: 157 PKNRMLLIENLRESQPYRYTVKARNGAGWGP 187
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 1/125 (0%)
Query: 203 APLDVKISEVTATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEISGIITTYYTVRNLSP 262
AP + + + +W PS + Y ++Y + + + + + NL P
Sbjct: 8 APQNPNAKAAGSRKIHFNWLPPSGKPMGYRVKYWIQGDSESEAHLLDSKVPSVELTNLYP 67
Query: 263 YTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEPETPN 322
Y +YE + A G GP SS T + P + P + +SS+ + W EP N
Sbjct: 68 YCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVP-SEPGRLAFNVVSSTVTQLSWAEPAETN 126
Query: 323 GQITA 327
G+ITA
Sbjct: 127 GEITA 131
>pdb|3F7Q|A Chain A, First Pair Of Fibronectin Type Iii Domains And Part Of The
Connecting Segment Of The Integrin Beta4
pdb|3F7Q|B Chain B, First Pair Of Fibronectin Type Iii Domains And Part Of The
Connecting Segment Of The Integrin Beta4
Length = 234
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 79/187 (42%), Gaps = 14/187 (7%)
Query: 438 KTPGFGEQALYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSST 497
K P LYP Y + + A +GEG + + RT Q P + P + +SS+
Sbjct: 56 KVPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVP-SEPGRLAFNVVSSTV 114
Query: 498 MVIQWDEPETPNGQITGYKVYY--TQDQSLPMSAWETQVVDN--NQLTTISDLTPHTIYT 553
+ W EP NG+IT Y+V Y D + P+ + +VDN N++ I +L Y
Sbjct: 115 TQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYR 174
Query: 554 IRVQAFTSVGPGPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLAWSKPTHSGENIISY 613
V+A G GP ++ Q P +P + + SGE+ S+
Sbjct: 175 YTVKARNGAGWGPEREAIINLATQ--PKRP-------MSIPIIPDIPIVDAQSGEDYDSF 225
Query: 614 ELYWNDT 620
+Y +D
Sbjct: 226 LMYSDDV 232
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 69/136 (50%), Gaps = 9/136 (6%)
Query: 484 APRDVQVRPLSSSTMVIQWDEPETPNGQITGYKV-YYTQDQSLPMSAWETQVVDNNQLTT 542
AP++ + S + W P+G+ GY+V Y+ Q S E ++D+ +
Sbjct: 8 APQNPNAKAAGSRKIHFNW---LPPSGKPMGYRVKYWIQGDSES----EAHLLDSKVPSV 60
Query: 543 -ISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLAWS 601
+++L P+ Y ++V A+ + G GP S+ V +T Q VPS+P L + T L+W+
Sbjct: 61 ELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSEPGRLAFNVVSSTVTQLSWA 120
Query: 602 KPTHSGENIISYELYW 617
+P + I +YE+ +
Sbjct: 121 EPAETNGEITAYEVCY 136
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 53/99 (53%), Gaps = 6/99 (6%)
Query: 720 PQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFVL 779
PQN + + S I +W PP +G + Y++++ G S+SEA ++ K S L
Sbjct: 9 PQNPNAKAAGSRKIHFNWLPP-----SGKPMGYRVKYWIQGDSESEAHLLDSK-VPSVEL 62
Query: 780 DELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDPSE 818
L + +Y + V A + G+GP S ++ RTH++ PSE
Sbjct: 63 TNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSE 101
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 68/156 (43%), Gaps = 8/156 (5%)
Query: 657 YWNDTYAKAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVP 716
YW ++++ H V + LT LYP Y + + A +GEG + + RT Q VP
Sbjct: 40 YWIQGDSESEAHLLDSKVPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVP 99
Query: 717 GAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDS-----EASIVTL 771
P + ++ +SST ++SW P +NG I Y++ + + + +V
Sbjct: 100 SEPGR-LAFNVVSSTVTQLSWAEPA--ETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDN 156
Query: 772 KNQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPI 807
+++ L++ YR V A G GP I
Sbjct: 157 PKNRMLLIENLRESQPYRYTVKARNGAGWGPEREAI 192
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 1/125 (0%)
Query: 203 APLDVKISEVTATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEISGIITTYYTVRNLSP 262
AP + + + +W PS + Y ++Y + + + + + NL P
Sbjct: 8 APQNPNAKAAGSRKIHFNWLPPSGKPMGYRVKYWIQGDSESEAHLLDSKVPSVELTNLYP 67
Query: 263 YTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEPETPN 322
Y +YE + A G GP SS T + P + P + +SS+ + W EP N
Sbjct: 68 YCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVP-SEPGRLAFNVVSSTVTQLSWAEPAETN 126
Query: 323 GQITA 327
G+ITA
Sbjct: 127 GEITA 131
>pdb|1QG3|A Chain A, Crystal Structure Of A Tandem Pair Of Fibronectin Type Iii
Domains From The Cytoplasmic Tail Of Integrin Alpha6
Beta4
pdb|1QG3|B Chain B, Crystal Structure Of A Tandem Pair Of Fibronectin Type Iii
Domains From The Cytoplasmic Tail Of Integrin Alpha6
Beta4
Length = 195
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 69/136 (50%), Gaps = 9/136 (6%)
Query: 484 APRDVQVRPLSSSTMVIQWDEPETPNGQITGYKV-YYTQDQSLPMSAWETQVVDNNQLTT 542
AP++ + S + W P+G+ GY+V Y+ Q S E ++D+ +
Sbjct: 4 APQNPNAKAAGSRKIHFNW---LPPSGKPMGYRVKYWIQGDSES----EAHLLDSKVPSV 56
Query: 543 -ISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLAWS 601
+++L P+ Y ++V A+ + G GP S+ V +T Q VPS+P L + T L+W+
Sbjct: 57 ELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSEPGRLAFNVVSSTVTQLSWA 116
Query: 602 KPTHSGENIISYELYW 617
+P + I +YE+ +
Sbjct: 117 EPAETNGEITAYEVCY 132
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 61/133 (45%), Gaps = 5/133 (3%)
Query: 438 KTPGFGEQALYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSST 497
K P LYP Y + + A +GEG + + RT Q P + P + +SS+
Sbjct: 52 KVPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVP-SEPGRLAFNVVSSTV 110
Query: 498 MVIQWDEPETPNGQITGYKVYY--TQDQSLPMSAWETQVVDN--NQLTTISDLTPHTIYT 553
+ W EP NG+IT Y+V Y D + P+ + +VDN N++ I +L Y
Sbjct: 111 TQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYR 170
Query: 554 IRVQAFTSVGPGP 566
V+A G GP
Sbjct: 171 YTVKARNGAGWGP 183
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 53/99 (53%), Gaps = 6/99 (6%)
Query: 720 PQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFVL 779
PQN + + S I +W PP +G + Y++++ G S+SEA ++ K S L
Sbjct: 5 PQNPNAKAAGSRKIHFNWLPP-----SGKPMGYRVKYWIQGDSESEAHLLDSK-VPSVEL 58
Query: 780 DELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDPSE 818
L + +Y + V A + G+GP S ++ RTH++ PSE
Sbjct: 59 TNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSE 97
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 68/156 (43%), Gaps = 8/156 (5%)
Query: 657 YWNDTYAKAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVP 716
YW ++++ H V + LT LYP Y + + A +GEG + + RT Q VP
Sbjct: 36 YWIQGDSESEAHLLDSKVPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVP 95
Query: 717 GAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDS-----EASIVTL 771
P + ++ +SST ++SW P +NG I Y++ + + + +V
Sbjct: 96 SEPGR-LAFNVVSSTVTQLSWAEP--AETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDN 152
Query: 772 KNQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPI 807
+++ L++ YR V A G GP I
Sbjct: 153 PKNRMLLIENLRESQPYRYTVKARNGAGWGPEREAI 188
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 1/125 (0%)
Query: 203 APLDVKISEVTATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEISGIITTYYTVRNLSP 262
AP + + + +W PS + Y ++Y + + + + + NL P
Sbjct: 4 APQNPNAKAAGSRKIHFNWLPPSGKPMGYRVKYWIQGDSESEAHLLDSKVPSVELTNLYP 63
Query: 263 YTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEPETPN 322
Y +YE + A G GP SS T + P + P + +SS+ + W EP N
Sbjct: 64 YCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVP-SEPGRLAFNVVSSTVTQLSWAEPAETN 122
Query: 323 GQITA 327
G+ITA
Sbjct: 123 GEITA 127
>pdb|1FNF|A Chain A, Fragment Of Human Fibronectin Encompassing Type-Iii
Repeats 7 Through 10
Length = 368
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 88/193 (45%), Gaps = 40/193 (20%)
Query: 203 APLDVKISEVTATSVRLDWTYPSETLLYYVIQY-------KPKAANTPYSEISGIITTYY 255
+P + S++TA S + W P T+ Y I++ +P+ P+S S
Sbjct: 188 SPTGIDFSDITANSFTVHWIAPRATITGYRIRHHPEHFSGRPREDRVPHSRNS------I 241
Query: 256 TVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQW 315
T+ NL+P TEY I+A+N G SP +I T PRD++V + ++++I W
Sbjct: 242 TLTNLTPGTEYVVSIVALN----GREESPLLIGQQSTV-SDVPRDLEVVAATPTSLLISW 296
Query: 316 DEPETPNGQITAKHHRRI----------------GLVETYSLTGLYPNTLYYIWLAAQSP 359
D P +T +++R G T +++GL P Y I + A +
Sbjct: 297 DAP-----AVTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTG 351
Query: 360 RGEG-ATTPPIPV 371
RG+ A++ PI +
Sbjct: 352 RGDSPASSKPISI 364
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 63/136 (46%), Gaps = 9/136 (6%)
Query: 150 DDKLPVGRNVLTLDRVTESENYTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKI 209
+D++P RN +TL +T Y ++ G E+ ++ Q T+ P D+++
Sbjct: 231 EDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLLIGQQS------TVSDVPRDLEV 284
Query: 210 SEVTATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEIS--GIITTYYTVRNLSPYTEYE 267
T TS+ + W P+ T+ YY I Y N+P E + G +T T+ L P +Y
Sbjct: 285 VAATPTSLLISWDAPAVTVRYYRITYGETGGNSPVQEFTVPGSKST-ATISGLKPGVDYT 343
Query: 268 FYIIAVNNLGRGPPSS 283
+ AV G P SS
Sbjct: 344 ITVYAVTGRGDSPASS 359
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 70/157 (44%), Gaps = 13/157 (8%)
Query: 447 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPE 506
L P T Y + +++ + E P+R +Q +P + +++++ + W P
Sbjct: 156 LLPGTEYVVSVSSVYEQHEST-----PLRGRQKTGLDSPTGIDFSDITANSFTVHWIAPR 210
Query: 507 TPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVGPGP 566
ITGY++ + + E +V + T+++LTP T Y + + A G
Sbjct: 211 ---ATITGYRIRH-HPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALN----GR 262
Query: 567 LSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLAWSKP 603
+P+L+ Q V PRDL V T++ ++W P
Sbjct: 263 EESPLLIGQQSTVSDVPRDLEVVAATPTSLLISWDAP 299
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 78/365 (21%), Positives = 137/365 (37%), Gaps = 72/365 (19%)
Query: 498 MVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLTTISDLTPHTIYTIRVQ 557
+ + W+ TP+ ITGY++ T ++ E V + T +L+P Y + V
Sbjct: 19 LTVSWERSTTPD--ITGYRITTTPTNGQQGNSLEEVVHADQSSCTFDNLSPGLEYNVSVY 76
Query: 558 AFTSVGPGPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLAWS--------------KP 603
+V S P+ VP P DLR +I + + W+ P
Sbjct: 77 ---TVKDDKESVPISDTIIPAVP-PPTDLRFTNIGPDTMRVTWAPPPSIDLTNFLVRYSP 132
Query: 604 THSGENIISYELYWNDTYA------------------------------------KPRDL 627
+ E++ + +D P +
Sbjct: 133 VKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQKTGLDSPTGI 192
Query: 628 RAVDIQETAVTLAWSKP--THSGENIISYELYWNDTYAKAKHHRRIGLVETYSLTGLYPN 685
DI + T+ W P T +G I + +++ + + R + +LT L P
Sbjct: 193 DFSDITANSFTVHWIAPRATITGYRIRHHPEHFS---GRPREDRVPHSRNSITLTNLTPG 249
Query: 686 TLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERS 745
T Y + + A + R E P+ + + V P +++ + TS+ ISW+ P V
Sbjct: 250 TEYVVSIVALNGREES----PLLIGQQSTVSDVP-RDLEVVAATPTSLLISWDAPAVT-- 302
Query: 746 NGHIVYYKLQFVETGRSDSEASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDGP-SS 804
+ YY++ + ETG + ++++ + LK +Y I V A T GD P SS
Sbjct: 303 ---VRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGRGDSPASS 359
Query: 805 YPITI 809
PI+I
Sbjct: 360 KPISI 364
Score = 36.2 bits (82), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 9/123 (7%)
Query: 447 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPE 506
L P T Y + + A + R E P+ + +Q PRD++V + ++++I WD P
Sbjct: 246 LTPGTEYVVSIVALNGREES----PLLIG-QQSTVSDVPRDLEVVAATPTSLLISWDAPA 300
Query: 507 TPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVGPGP 566
+ Y++ Y + E V + TIS L P YTI V A T G P
Sbjct: 301 V---TVRYYRITYGETGG-NSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGRGDSP 356
Query: 567 LSA 569
S+
Sbjct: 357 ASS 359
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 78/168 (46%), Gaps = 24/168 (14%)
Query: 131 GSPMPFVKWRKGQN-IELTPDDKLPVGRNVLTL------DRVTESENYTCIAASVLGVIE 183
G P P + W+KGQ+ I+ ++ V R+ +L +R ++ Y A + G+ +
Sbjct: 130 GKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVER-KDAGFYVVCAKNRFGIDQ 188
Query: 184 TSTIVKVQCKYAPLLTLPVAPLDVKISEVTATSVRLDWTYPSE----TLLYYVIQYKPKA 239
+ + V +P P VK+S+V+ SV L WT P+ + Y+++ K
Sbjct: 189 KTVELDVA-------DVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVE---KC 238
Query: 240 ANTP--YSEISGIITTYYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPA 285
A T + + T YTV NL T Y+F +IA N G PS P+
Sbjct: 239 ATTAERWLRVGQARETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPS 286
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 28/61 (45%)
Query: 579 VPSQPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKPRDLRAVDIQETAVT 638
VP PR ++ D+ +V L W++P G + I+ + R LR +ET T
Sbjct: 198 VPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAERWLRVGQARETRYT 257
Query: 639 L 639
+
Sbjct: 258 V 258
>pdb|2EDY|A Chain A, Solution Structures Of The Fn3 Domain Of Human Receptor-
Type Tyrosine-Protein Phosphatase F
Length = 103
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Query: 720 PQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFVL 779
PQN+ L++++ ++W+PP + NG I+ Y + F + +S+ + + T F L
Sbjct: 12 PQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDI---NSQQELQNITTDTRFTL 68
Query: 780 DELKKWTEYRIWVLAGTSIGDGPSSYPITIRT 811
LK T Y I V A TS G GP S I RT
Sbjct: 69 TGLKPDTTYDIKVRAWTSKGSGPLSPSIQSRT 100
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 6/93 (6%)
Query: 485 PRDVQVRPLSSSTMVIQWDEPETP--NGQITGYKVYYTQDQSLPMSAWETQVVDNNQLTT 542
P+++ V L++ST + WD P NG+I Y V + S E Q + + T
Sbjct: 12 PQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDINS----QQELQNITTDTRFT 67
Query: 543 ISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKT 575
++ L P T Y I+V+A+TS G GPLS + +T
Sbjct: 68 LTGLKPDTTYDIKVRAWTSKGSGPLSPSIQSRT 100
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 624 PRDLRAVDIQETAVTLAWSKPTHSGEN--IISYELYWNDTYAKAKHHRRIGLVETYSLTG 681
P++L + + LAW P + N IISY + + D ++ + + I ++LTG
Sbjct: 12 PQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDINSQ-QELQNITTDTRFTLTG 70
Query: 682 LYPNTLYYIWLAAQSPRGEGATTPPIPVRT 711
L P+T Y I + A + +G G +P I RT
Sbjct: 71 LKPDTTYDIKVRAWTSKGSGPLSPSIQSRT 100
Score = 36.6 bits (83), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 13/89 (14%)
Query: 298 PRDVQVRPLSSSTMVIQWDEPETP--NGQITA-----------KHHRRIGLVETYSLTGL 344
P+++ V L++ST + WD P NG+I + + + I ++LTGL
Sbjct: 12 PQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDINSQQELQNITTDTRFTLTGL 71
Query: 345 YPNTLYYIWLAAQSPRGEGATTPPIPVRT 373
P+T Y I + A + +G G +P I RT
Sbjct: 72 KPDTTYDIKVRAWTSKGSGPLSPSIQSRT 100
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 857 ELNVTGLQPDTIYTIQVAALTRKGDG 882
+TGL+PDT Y I+V A T KG G
Sbjct: 65 RFTLTGLKPDTTYDIKVRAWTSKGSG 90
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 399 YSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRT 433
++LTGL P+T Y I + A + +G G +P I RT
Sbjct: 66 FTLTGLKPDTTYDIKVRAWTSKGSGPLSPSIQSRT 100
>pdb|2ED7|A Chain A, Solution Structure Of The First Fibronectin Type Iii
Domain Of Human Netrin Receptor Dcc
Length = 119
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 483 TAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLTT 542
+APRDV +SS + + W P G I + V+++++ A T + QLT
Sbjct: 19 SAPRDVVPVLVSSRFVRLSWRPPAEAKGNIQTFTVFFSREGDNRERALNTTQPGSLQLT- 77
Query: 543 ISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQ 576
+ +L P +YT RV A+ GPG S P+ V TQ
Sbjct: 78 VGNLKPEAMYTFRVVAYNEWGPGESSQPIKVATQ 111
Score = 37.4 bits (85), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 50/114 (43%), Gaps = 6/114 (5%)
Query: 705 PPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDS 764
P IP + +P AP ++V +SS +R+SW PP + G+I + + F G +
Sbjct: 9 PAIP--SSSVLPSAP-RDVVPVLVSSRFVRLSWRPP--AEAKGNIQTFTVFFSREGDNRE 63
Query: 765 EASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTH-EDDPS 817
A T + LK Y V+A G G SS PI + T E PS
Sbjct: 64 RALNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESSQPIKVATQPESGPS 117
Score = 36.2 bits (82), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Query: 200 LPVAPLDVKISEVTATSVRLDWTYPSE---TLLYYVIQYKPKAANTPYS-EISGIITTYY 255
LP AP DV V++ VRL W P+E + + + + + N + + +
Sbjct: 17 LPSAPRDVVPVLVSSRFVRLSWRPPAEAKGNIQTFTVFFSREGDNRERALNTTQPGSLQL 76
Query: 256 TVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITT 289
TV NL P Y F ++A N G G S P + T
Sbjct: 77 TVGNLKPEAMYTFRVVAYNEWGPGESSQPIKVAT 110
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 622 AKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWN---DTYAKAKHHRRIGLVETYS 678
+ PRD+ V + V L+W P + NI ++ ++++ D +A + + G ++ +
Sbjct: 19 SAPRDVVPVLVSSRFVRLSWRPPAEAKGNIQTFTVFFSREGDNRERALNTTQPGSLQ-LT 77
Query: 679 LTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTK 712
+ L P +Y + A + G G ++ PI V T+
Sbjct: 78 VGNLKPEAMYTFRVVAYNEWGPGESSQPIKVATQ 111
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 854 GALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKT 892
G+L+L V L+P+ +YT +V A G G+ S+P + T
Sbjct: 72 GSLQLTVGNLKPEAMYTFRVVAYNEWGPGESSQPIKVAT 110
>pdb|1UEY|A Chain A, Solution Structure Of The First Fibronectin Type Iii
Domain Of Human Kiaa0343 Protein
Length = 127
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 11/96 (11%)
Query: 195 APLLTLPVAPLDVKISEVTATSVRLDWTYPSET---LLYYVIQYKPKAANTP-----YSE 246
AP+ +P P D+++++ SV+L WT + + ++I+Y+ A + P +E
Sbjct: 11 APVYDVPNPPFDLELTDQLDKSVQLSWTPGDDNNSPITKFIIEYE-DAMHKPGLWHHQTE 69
Query: 247 ISGIITTYYTVRNLSPYTEYEFYIIAVNNLGRGPPS 282
+SG TT NLSPY Y F ++AVN++G+ PS
Sbjct: 70 VSGTQTT--AQLNLSPYVNYSFRVMAVNSIGKSLPS 103
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 7/100 (7%)
Query: 466 GATTP-PIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQS 524
G++ P P PV Y+ P D+++ ++ + W + N IT + + Y
Sbjct: 4 GSSGPTPAPV----YDVPNPPFDLELTDQLDKSVQLSWTPGDDNNSPITKFIIEYEDAMH 59
Query: 525 LPMSAWETQV-VDNNQLTTISDLTPHTIYTIRVQAFTSVG 563
P W Q V Q T +L+P+ Y+ RV A S+G
Sbjct: 60 KP-GLWHHQTEVSGTQTTAQLNLSPYVNYSFRVMAVNSIG 98
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 77/181 (42%), Gaps = 20/181 (11%)
Query: 121 SPLNLSCVAVGSPMPFVKWRKGQNI----ELTPDDKLPVGRNVLTLDRVTESEN----YT 172
+P+N+SC +P + WR+ + + T GR ++ L+ S+N Y
Sbjct: 116 NPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMI-LEIAPTSDNDFGRYN 174
Query: 173 CIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISEVTATSVRLDWTYPSET----L 228
C A + +G + Q L +P +P VKI E++ T+ ++ + P +
Sbjct: 175 CTATNHIGT-------RFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPI 227
Query: 229 LYYVIQYKPKAANTPYSEISGIITTYYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVIT 288
+Y + K A+ S + T + NL P T YE + AVN G+G S +
Sbjct: 228 HHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQ 287
Query: 289 T 289
T
Sbjct: 288 T 288
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 86/198 (43%), Gaps = 5/198 (2%)
Query: 604 THSGENIISYELYWNDTYAKPRDLRAVDIQETAVTLAWSKP-THSGENIISYELYWNDTY 662
H G Y L D + P ++ +++ +T ++++KP +H G I Y++ +
Sbjct: 179 NHIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVA 238
Query: 663 AKA-KHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQ 721
++ K R G+ L L PNT Y I +AA + +G+G + +T +PP
Sbjct: 239 SEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPP- 297
Query: 722 NVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFVLDE 781
++ +P S S ++S + I+ Y +++ + D N+ +L+
Sbjct: 298 SIHGQPSSGKSFKLSITKQ--DDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEH 355
Query: 782 LKKWTEYRIWVLAGTSIG 799
L+ Y + + A +G
Sbjct: 356 LQWTMGYEVQITAANRLG 373
Score = 36.2 bits (82), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 64/284 (22%), Positives = 108/284 (38%), Gaps = 66/284 (23%)
Query: 123 LNLSCVAVGSPMPFVKWRKG-QNIELTPDDKLPVGR---------NVLTLD--RVTESEN 170
+ L C A G P+P + W++ T DK GR + L + ++++S
Sbjct: 18 VTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGR 77
Query: 171 YTCIAASVLGVIETSTIVKVQCKYAPLL--------TLPVAPLDVKISEVTATSVRLDWT 222
Y C AAS +G + S + ++ YAP + P+++ + + W
Sbjct: 78 YDCEAASRIGGHQKSMYLDIE--YAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWR 135
Query: 223 YPSETLLYYVIQYKPKAANTPYSEISGIITTYYTVRNLSPYTEYEFYIIAVNNLGRGPPS 282
L A NT + TY T R + E + N+ GR +
Sbjct: 136 RDKLVL---------PAKNTTN------LKTYSTGRKMI----LEIAPTSDNDFGRYNCT 176
Query: 283 SPAVITTGETEPGTA-------PRDVQVRPLSSSTMVIQWDEPETPNGQITAKHHRRIGL 335
+ I T E A P V++ LS +T + +++P++ G HH ++ +
Sbjct: 177 ATNHIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGG--VPIHHYQVDV 234
Query: 336 VETYS----------------LTGLYPNTLYYIWLAAQSPRGEG 363
E S L L PNT Y I +AA + +G+G
Sbjct: 235 KEVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQG 278
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 860 VTGLQPDTIYTIQVAALTRKGDGDRSKPETIKT 892
+ L+P+T Y I+VAA+ KG GD SK E +T
Sbjct: 256 LNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQT 288
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 483 TAPRDVQVRPLSSSTMVIQWDEPETPNGQ-ITGYKVYYTQDQSLPMSAWETQVVDNNQ-L 540
++P V++ LS +T + +++P++ G I Y+V + + W+ Q +
Sbjct: 197 SSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQV---DVKEVASEIWKIVRSHGVQTM 253
Query: 541 TTISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKT 575
+++L P+T Y IRV A G G S + +T
Sbjct: 254 VVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQT 288
>pdb|1MFN|A Chain A, Solution Nmr Structure Of Linked Cell Attachment Modules
Of Mouse Fibronectin Containing The Rgd And Synergy
Regions, 20 Structures
pdb|2MFN|A Chain A, Solution Nmr Structure Of Linked Cell Attachment Modules
Of Mouse Fibronectin Containing The Rgd And Synergy
Regions, 10 Structures
Length = 184
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 9/138 (6%)
Query: 151 DKLPVGRNVLTLDRVTESENYTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKIS 210
D++P RN +TL + Y +V G E+ ++ Q + + P D+++
Sbjct: 48 DRVPPSRNSITLTNLNPGTEYVVSIIAVNGREESPPLIGQQATVSDI------PRDLEVI 101
Query: 211 EVTATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEIS--GIITTYYTVRNLSPYTEYEF 268
T TS+ + W P+ ++ YY I Y N+P E + G +T T+ N+ P +Y
Sbjct: 102 ASTPTSLLISWEPPAVSVRYYRITYGETGGNSPVQEFTVPGSKST-ATINNIKPGADYTI 160
Query: 269 YIIAVNNLGRGPPSSPAV 286
+ AV G P SS V
Sbjct: 161 TLYAVTGRGDSPASSKPV 178
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 81/188 (43%), Gaps = 12/188 (6%)
Query: 623 KPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVETYSLTGL 682
P + DI + T+ W P I + + + + R + +LT L
Sbjct: 4 SPTGFDSSDITANSFTVHWVAPRAPITGYI-IRHHAEHSVGRPRQDRVPPSRNSITLTNL 62
Query: 683 YPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPPV 742
P T Y + + A + R E P+ +Q P+++ + TS+ ISWEPP V
Sbjct: 63 NPGTEYVVSIIAVNGREESP-----PLIGQQATVSDIPRDLEVIASTPTSLLISWEPPAV 117
Query: 743 ERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDGP 802
+ YY++ + ETG + ++++ ++ +K +Y I + A T GD P
Sbjct: 118 S-----VRYYRITYGETGGNSPVQEFTVPGSKSTATINNIKPGADYTITLYAVTGRGDSP 172
Query: 803 -SSYPITI 809
SS P++I
Sbjct: 173 ASSKPVSI 180
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 79/191 (41%), Gaps = 30/191 (15%)
Query: 203 APLDVKISEVTATSVRLDWTYPSETLLYYVIQY-------KPKAANTPYSEISGIITTYY 255
+P S++TA S + W P + Y+I++ +P+ P S S
Sbjct: 4 SPTGFDSSDITANSFTVHWVAPRAPITGYIIRHHAEHSVGRPRQDRVPPSRNS------I 57
Query: 256 TVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQW 315
T+ NL+P TEY IIAVN PP + + PRD++V + ++++I W
Sbjct: 58 TLTNLNPGTEYVVSIIAVNGREESPP-----LIGQQATVSDIPRDLEVIASTPTSLLISW 112
Query: 316 DEPETP-----------NGQITAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEG- 363
+ P G + G T ++ + P Y I L A + RG+
Sbjct: 113 EPPAVSVRYYRITYGETGGNSPVQEFTVPGSKSTATINNIKPGADYTITLYAVTGRGDSP 172
Query: 364 ATTPPIPVRTK 374
A++ P+ + K
Sbjct: 173 ASSKPVSINYK 183
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 52/114 (45%), Gaps = 8/114 (7%)
Query: 493 LSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLTTISDLTPHTIY 552
+++++ + W P P ITGY + + + S+ + N +T +++L P T Y
Sbjct: 13 ITANSFTVHWVAPRAP---ITGYIIRHHAEHSVGRPRQDRVPPSRNSIT-LTNLNPGTEY 68
Query: 553 TIRVQAFTSVGPGPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLAWSKPTHS 606
+ + A G +P L+ Q V PRDL + T++ ++W P S
Sbjct: 69 VVSIIAVN----GREESPPLIGQQATVSDIPRDLEVIASTPTSLLISWEPPAVS 118
Score = 33.1 bits (74), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 11/124 (8%)
Query: 447 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPE 506
L P T Y + + A + R E P+ +Q PRD++V + ++++I W+ P
Sbjct: 62 LNPGTEYVVSIIAVNGREESP-----PLIGQQATVSDIPRDLEVIASTPTSLLISWEPPA 116
Query: 507 TPNGQITGYKVYYTQ-DQSLPMSAWETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVGPG 565
+ Y++ Y + + P+ E V + TI+++ P YTI + A T G
Sbjct: 117 V---SVRYYRITYGETGGNSPVQ--EFTVPGSKSTATINNIKPGADYTITLYAVTGRGDS 171
Query: 566 PLSA 569
P S+
Sbjct: 172 PASS 175
>pdb|1X5F|A Chain A, The Solution Structure Of The First Fibronectin Type Iii
Domain Of Human Neogenin
Length = 120
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 53/111 (47%), Gaps = 11/111 (9%)
Query: 467 ATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPET-PNGQITGYKVYYTQDQSL 525
ATT P+P +APRDV +S+ + + W P + P+G Y V+YT++ +
Sbjct: 12 ATTGPLP---------SAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKE-GI 61
Query: 526 PMSAWETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQ 576
E TI +L P T+Y RV A G G SAP+ V+TQ
Sbjct: 62 ARERVENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSAPLRVETQ 112
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 52/113 (46%), Gaps = 10/113 (8%)
Query: 193 KYAPLLT--LPVAPLDVKISEVTATSVRLDWTYPS-----ETLLYYVIQYKPKAANTPYS 245
++AP T LP AP DV S V+ ++L W P+ + L Y V K A
Sbjct: 8 EHAPATTGPLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVE 67
Query: 246 EISGIITTYYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAP 298
S T++NL P T Y F ++A N G G S+P + ET+P + P
Sbjct: 68 NTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSAPLRV---ETQPESGP 117
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 3/94 (3%)
Query: 622 AKPRDLRAVDIQETAVTLAWSKPTHS--GENIISYELYWNDTYAKAKHHRRIGLVET-YS 678
+ PRD+ A + + L W P G+N+ Y + A+ + E +
Sbjct: 19 SAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHPGEMQVT 78
Query: 679 LTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTK 712
+ L P T+Y + AQ+ G G ++ P+ V T+
Sbjct: 79 IQNLMPATVYIFRVMAQNKHGSGESSAPLRVETQ 112
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 849 DVSDGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKT 892
+ S G +++ + L P T+Y +V A + G G+ S P ++T
Sbjct: 68 NTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSAPLRVET 111
>pdb|1X5G|A Chain A, The Solution Structure Of The Second Fibronectin Type Iii
Domain Of Human Neogenin
Length = 116
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 53/100 (53%), Gaps = 6/100 (6%)
Query: 715 VPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQ 774
+PG P N+ S TSI ++WE P NG I YKL ++E G +D E + +
Sbjct: 17 LPGPAP-NLRAYAASPTSITVTWETP--VSGNGEIQNYKLYYMEKG-TDKEQDVDVSSH- 71
Query: 775 TSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHED 814
S+ ++ LKK+TEY V+A G G S+ + +RT D
Sbjct: 72 -SYTINGLKKYTEYSFRVVAYNKHGPGVSTPDVAVRTLSD 110
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 5/95 (5%)
Query: 481 PGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQL 540
PG AP +++ S +++ + W+ P + NG+I YK+YY + + E V ++
Sbjct: 18 PGPAP-NLRAYAASPTSITVTWETPVSGNGEIQNYKLYYMEKG----TDKEQDVDVSSHS 72
Query: 541 TTISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKT 575
TI+ L +T Y+ RV A+ GPG + V V+T
Sbjct: 73 YTINGLKKYTEYSFRVVAYNKHGPGVSTPDVAVRT 107
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 626 DLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVETYSLTGLYPN 685
+LRA T++T+ W P I +Y+LY+ + + + +Y++ GL
Sbjct: 23 NLRAYAASPTSITVTWETPVSGNGEIQNYKLYYMEKGTDKEQDVDVS-SHSYTINGLKKY 81
Query: 686 TLYYIWLAAQSPRGEGATTPPIPVRT 711
T Y + A + G G +TP + VRT
Sbjct: 82 TEYSFRVVAYNKHGPGVSTPDVAVRT 107
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 47/121 (38%), Gaps = 29/121 (23%)
Query: 196 PLLTLPVAPLDVKISEVTATSVRLDWTYP-------SETLLYYVIQYKPKAANTPYSEIS 248
P + LP +++ + TS+ + W P LYY+ + K + S S
Sbjct: 13 PEVQLPGPAPNLRAYAASPTSITVTWETPVSGNGEIQNYKLYYMEKGTDKEQDVDVSSHS 72
Query: 249 GIITTYYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLSS 308
YT+ L YTEY F ++A N G PG + DV VR LS
Sbjct: 73 ------YTINGLKKYTEYSFRVVAYNKHG----------------PGVSTPDVAVRTLSD 110
Query: 309 S 309
S
Sbjct: 111 S 111
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 12/91 (13%)
Query: 294 PGTAPRDVQVRPLSSSTMVIQWDEPETPNGQI-----------TAKHHRRIGLVETYSLT 342
PG AP +++ S +++ + W+ P + NG+I T K +Y++
Sbjct: 18 PGPAP-NLRAYAASPTSITVTWETPVSGNGEIQNYKLYYMEKGTDKEQDVDVSSHSYTIN 76
Query: 343 GLYPNTLYYIWLAAQSPRGEGATTPPIPVRT 373
GL T Y + A + G G +TP + VRT
Sbjct: 77 GLKKYTEYSFRVVAYNKHGPGVSTPDVAVRT 107
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 77/181 (42%), Gaps = 20/181 (11%)
Query: 121 SPLNLSCVAVGSPMPFVKWRKGQNI----ELTPDDKLPVGRNVLTLDRVTESEN----YT 172
+P+N+SC +P + WR+ + + T GR ++ L+ S+N Y
Sbjct: 116 NPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMI-LEIAPTSDNDFGRYN 174
Query: 173 CIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISEVTATSVRLDWTYPSET----L 228
C A + +G + Q L +P +P VKI E++ T+ ++ + P +
Sbjct: 175 CTATNHIGT-------RFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPI 227
Query: 229 LYYVIQYKPKAANTPYSEISGIITTYYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVIT 288
+Y + K A+ S + T + NL P T YE + AVN G+G S +
Sbjct: 228 HHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQ 287
Query: 289 T 289
T
Sbjct: 288 T 288
Score = 36.2 bits (82), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
Query: 604 THSGENIISYELYWNDTYAKPRDLRAVDIQETAVTLAWSKP-THSGENIISYELYWNDTY 662
H G Y L D + P ++ +++ +T ++++KP +H G I Y++ +
Sbjct: 179 NHIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVA 238
Query: 663 AKA-KHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEG 701
++ K R G+ L L PNT Y I +AA + +G+G
Sbjct: 239 SEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQG 278
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 64/287 (22%), Positives = 109/287 (37%), Gaps = 66/287 (22%)
Query: 120 DSPLNLSCVAVGSPMPFVKWRKG-QNIELTPDDKLPVGR---------NVLTLD--RVTE 167
+ + L C A G P+P + W++ T DK GR + L + ++++
Sbjct: 15 NGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSD 74
Query: 168 SENYTCIAASVLGVIETSTIVKVQCKYAPLL--------TLPVAPLDVKISEVTATSVRL 219
S Y C AAS +G + S + ++ YAP + P+++ + +
Sbjct: 75 SGRYDCEAASRIGGHQKSMYLDIE--YAPKFISNQTIYYSWEGNPINISCDVKSNPPASI 132
Query: 220 DWTYPSETLLYYVIQYKPKAANTPYSEISGIITTYYTVRNLSPYTEYEFYIIAVNNLGRG 279
W L A NT + TY T R + E + N+ GR
Sbjct: 133 HWRRDKLVL---------PAKNTTN------LKTYSTGRKMI----LEIAPTSDNDFGRY 173
Query: 280 PPSSPAVITTGETEPGTA-------PRDVQVRPLSSSTMVIQWDEPETPNGQITAKHHRR 332
++ I T E A P V++ LS +T + +++P++ G HH +
Sbjct: 174 NCTATNHIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGG--VPIHHYQ 231
Query: 333 IGLVETYS----------------LTGLYPNTLYYIWLAAQSPRGEG 363
+ + E S L L PNT Y I +AA + +G+G
Sbjct: 232 VDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQG 278
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 860 VTGLQPDTIYTIQVAALTRKGDGDRSKPETIKT 892
+ L+P+T Y I+VAA+ KG GD SK E +T
Sbjct: 256 LNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQT 288
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 483 TAPRDVQVRPLSSSTMVIQWDEPETPNGQ-ITGYKVYYTQDQSLPMSAWETQVVDNNQ-L 540
++P V++ LS +T + +++P++ G I Y+V + + W+ Q +
Sbjct: 197 SSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQV---DVKEVASEIWKIVRSHGVQTM 253
Query: 541 TTISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKT 575
+++L P+T Y IRV A G G S + +T
Sbjct: 254 VVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQT 288
>pdb|3R8Q|A Chain A, Structure Of Fibronectin Domain 12-14
Length = 290
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 71/313 (22%), Positives = 121/313 (38%), Gaps = 63/313 (20%)
Query: 484 APRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYT-QDQSLPMSAWETQVVDNNQLTT 542
AP D++ ++ +++ QW P N Q+TGY+V T ++++ PM E + ++
Sbjct: 23 APTDLKFTQVTPTSLSAQWTPP---NVQLTGYRVRVTPKEKTGPMK--EINLAPDSSSVV 77
Query: 543 ISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLAWSK 602
+S L T Y + V A A +V T + V S PR R D ET +T++W
Sbjct: 78 VSGLMVATKYEVSVYALKDTLTS-RPAQGVVTTLENV-SPPRRARVTDATETTITISWRT 135
Query: 603 PTHSGENIISYELYWNDTYAKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTY 662
T E I +++
Sbjct: 136 KT--------------------------------------------ETITGFQVDAVPAN 151
Query: 663 AKAKHHRRIG-LVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQ 721
+ R I V +Y++TGL P T Y I+L + + A + P+ + + P
Sbjct: 152 GQTPIQRTIKPDVRSYTITGLQPGTDYKIYLYTLN---DNARSSPVVIDASTAIDA--PS 206
Query: 722 NVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFVLDE 781
N+ + S+ +SW+PP I Y +++ + G E T +
Sbjct: 207 NLRFLATTPNSLLVSWQPP-----RARITGYIIKYEKPGSPPREVVPRPRPGVTEATITG 261
Query: 782 LKKWTEYRIWVLA 794
L+ TEY I+V+A
Sbjct: 262 LEPGTEYTIYVIA 274
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 73/165 (44%), Gaps = 18/165 (10%)
Query: 204 PLDVKISEVTATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEISGIITTYYTVRNLSPY 263
P ++++ T T++ + W +ET+ + + P TP YT+ L P
Sbjct: 116 PRRARVTDATETTITISWRTKTETITGFQVDAVPANGQTPIQRTIKPDVRSYTITGLQPG 175
Query: 264 TEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEPETPNG 323
T+Y+ Y+ +N+ R SSP VI + AP +++ + +++++ W P
Sbjct: 176 TDYKIYLYTLNDNAR---SSPVVI--DASTAIDAPSNLRFLATTPNSLLVSWQPPRARIT 230
Query: 324 QITAKHHR------------RIGLVETYSLTGLYPNTLYYIWLAA 356
K+ + R G+ E ++TGL P T Y I++ A
Sbjct: 231 GYIIKYEKPGSPPREVVPRPRPGVTEA-TITGLEPGTEYTIYVIA 274
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 71/293 (24%), Positives = 109/293 (37%), Gaps = 68/293 (23%)
Query: 203 APLDVKISEVTATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEIS-GIITTYYTVRNLS 261
AP D+K ++VT TS+ WT P+ L Y ++ PK P EI+ ++ V L
Sbjct: 23 APTDLKFTQVTPTSLSAQWTPPNVQLTGYRVRVTPKEKTGPMKEINLAPDSSSVVVSGLM 82
Query: 262 PYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEPETP 321
T+YE + A+ + P+ V T P PR +V + +T+ I W
Sbjct: 83 VATKYEVSVYALKDTLTSRPAQGVVTTLENVSP---PRRARVTDATETTITISWR----- 134
Query: 322 NGQITAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYGKTPG 381
+T ++TG Q P
Sbjct: 135 --------------TKTETITGF------------------------------QVDAVPA 150
Query: 382 FGEQAAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYGKTP- 440
G+ + + V +Y++TGL P T Y I+L + + A + P+ + P
Sbjct: 151 NGQTPIQRTIKPD-VRSYTITGLQPGTDYKIYLYTLN---DNARSSPVVIDASTAIDAPS 206
Query: 441 GFGEQALYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYE-PGTAPRDVQVRP 492
A PN+L W Q PR I +YE PG+ PR+V RP
Sbjct: 207 NLRFLATTPNSLLVSW---QPPRAR------ITGYIIKYEKPGSPPREVVPRP 250
Score = 32.7 bits (73), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 203 APLDVKISEVTATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEIS----GIITTYYTVR 258
AP +++ T S+ + W P + Y+I+Y+ K + P + G+ T T+
Sbjct: 204 APSNLRFLATTPNSLLVSWQPPRARITGYIIKYE-KPGSPPREVVPRPRPGV--TEATIT 260
Query: 259 NLSPYTEYEFYIIAVNNLGRGPP 281
L P TEY Y+IA+ N + P
Sbjct: 261 GLEPGTEYTIYVIALKNNQKSEP 283
>pdb|1FNH|A Chain A, Crystal Structure Of Heparin And Integrin Binding Segment
Of Human Fibronectin
Length = 271
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 71/313 (22%), Positives = 121/313 (38%), Gaps = 63/313 (20%)
Query: 484 APRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYT-QDQSLPMSAWETQVVDNNQLTT 542
AP D++ ++ +++ QW P N Q+TGY+V T ++++ PM E + ++
Sbjct: 4 APTDLKFTQVTPTSLSAQWTPP---NVQLTGYRVRVTPKEKTGPMK--EINLAPDSSSVV 58
Query: 543 ISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLAWSK 602
+S L T Y + V A A +V T + V S PR R D ET +T++W
Sbjct: 59 VSGLMVATKYEVSVYALKDTLTS-RPAQGVVTTLENV-SPPRRARVTDATETTITISWRT 116
Query: 603 PTHSGENIISYELYWNDTYAKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTY 662
T E I +++
Sbjct: 117 KT--------------------------------------------ETITGFQVDAVPAN 132
Query: 663 AKAKHHRRIG-LVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQ 721
+ R I V +Y++TGL P T Y I+L + + A + P+ + + P
Sbjct: 133 GQTPIQRTIKPDVRSYTITGLQPGTDYKIYLYTLN---DNARSSPVVIDASTAIDA--PS 187
Query: 722 NVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFVLDE 781
N+ + S+ +SW+PP I Y +++ + G E T +
Sbjct: 188 NLRFLATTPNSLLVSWQPP-----RARITGYIIKYEKPGSPPREVVPRPRPGVTEATITG 242
Query: 782 LKKWTEYRIWVLA 794
L+ TEY I+V+A
Sbjct: 243 LEPGTEYTIYVIA 255
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 73/165 (44%), Gaps = 18/165 (10%)
Query: 204 PLDVKISEVTATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEISGIITTYYTVRNLSPY 263
P ++++ T T++ + W +ET+ + + P TP YT+ L P
Sbjct: 97 PRRARVTDATETTITISWRTKTETITGFQVDAVPANGQTPIQRTIKPDVRSYTITGLQPG 156
Query: 264 TEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEPETPNG 323
T+Y+ Y+ +N+ R SSP VI + AP +++ + +++++ W P
Sbjct: 157 TDYKIYLYTLNDNAR---SSPVVI--DASTAIDAPSNLRFLATTPNSLLVSWQPPRARIT 211
Query: 324 QITAKHHR------------RIGLVETYSLTGLYPNTLYYIWLAA 356
K+ + R G+ E ++TGL P T Y I++ A
Sbjct: 212 GYIIKYEKPGSPPREVVPRPRPGVTEA-TITGLEPGTEYTIYVIA 255
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 71/293 (24%), Positives = 109/293 (37%), Gaps = 68/293 (23%)
Query: 203 APLDVKISEVTATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEIS-GIITTYYTVRNLS 261
AP D+K ++VT TS+ WT P+ L Y ++ PK P EI+ ++ V L
Sbjct: 4 APTDLKFTQVTPTSLSAQWTPPNVQLTGYRVRVTPKEKTGPMKEINLAPDSSSVVVSGLM 63
Query: 262 PYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEPETP 321
T+YE + A+ + P+ V T P PR +V + +T+ I W
Sbjct: 64 VATKYEVSVYALKDTLTSRPAQGVVTTLENVSP---PRRARVTDATETTITISWR----- 115
Query: 322 NGQITAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYGKTPG 381
+T ++TG Q P
Sbjct: 116 --------------TKTETITGF------------------------------QVDAVPA 131
Query: 382 FGEQAAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYGKTP- 440
G+ + + V +Y++TGL P T Y I+L + + A + P+ + P
Sbjct: 132 NGQTPIQRTIKPD-VRSYTITGLQPGTDYKIYLYTLN---DNARSSPVVIDASTAIDAPS 187
Query: 441 GFGEQALYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYE-PGTAPRDVQVRP 492
A PN+L W Q PR I +YE PG+ PR+V RP
Sbjct: 188 NLRFLATTPNSLLVSW---QPPRAR------ITGYIIKYEKPGSPPREVVPRP 231
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 203 APLDVKISEVTATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEIS----GIITTYYTVR 258
AP +++ T S+ + W P + Y+I+Y+ K + P + G+ T T+
Sbjct: 185 APSNLRFLATTPNSLLVSWQPPRARITGYIIKYE-KPGSPPREVVPRPRPGV--TEATIT 241
Query: 259 NLSPYTEYEFYIIAVNNLGRGPP 281
L P TEY Y+IA+ N + P
Sbjct: 242 GLEPGTEYTIYVIALKNNQKSEP 264
>pdb|1X5L|A Chain A, Solution Structure Of The Second Fn3 Domain Of Eph
Receptor A8 Protein
Length = 111
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 6/89 (6%)
Query: 496 STMVIQWDEPETPNGQITGYKV-YYTQDQSLPMSAWETQVVDNNQLTTISDLTPHTIYTI 554
+++ + W EPE PNG I Y++ YY +D+ M ++ T + T+S L P T Y
Sbjct: 25 TSVSLLWQEPEQPNGIILEYEIKYYEKDKE--MQSYSTLKAVTTR-ATVSGLKPGTRYVF 81
Query: 555 RVQAFTSVGPGPLSAPVLVKTQQGVPSQP 583
+V+A TS G G S + V+T G PS P
Sbjct: 82 QVRARTSAGCGRFSQAMEVET--GKPSGP 108
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
Query: 215 TSVRLDWTYPSE---TLLYYVIQYKPKAANTPYSEISGIITTYYTVRNLSPYTEYEFYII 271
TSV L W P + +L Y I+Y K +TT TV L P T Y F +
Sbjct: 25 TSVSLLWQEPEQPNGIILEYEIKYYEKDKEMQSYSTLKAVTTRATVSGLKPGTRYVFQVR 84
Query: 272 AVNNLGRGPPSSPAVITTGE 291
A + G G S + TG+
Sbjct: 85 ARTSAGCGRFSQAMEVETGK 104
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 627 LRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVETYS-LTGLYPN 685
+R +T+V+L W +P I+ YE+ + + + + + + V T + ++GL P
Sbjct: 17 IRQERAGQTSVSLLWQEPEQPNGIILEYEIKYYEKDKEMQSYSTLKAVTTRATVSGLKPG 76
Query: 686 TLYYIWLAAQSPRGEGATTPPIPVRT 711
T Y + A++ G G + + V T
Sbjct: 77 TRYVFQVRARTSAGCGRFSQAMEVET 102
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 13/78 (16%)
Query: 309 STMVIQWDEPETPNGQITA---KHHRRIGLVETYS----------LTGLYPNTLYYIWLA 355
+++ + W EPE PNG I K++ + +++YS ++GL P T Y +
Sbjct: 25 TSVSLLWQEPEQPNGIILEYEIKYYEKDKEMQSYSTLKAVTTRATVSGLKPGTRYVFQVR 84
Query: 356 AQSPRGEGATTPPIPVRT 373
A++ G G + + V T
Sbjct: 85 ARTSAGCGRFSQAMEVET 102
>pdb|2V5Y|A Chain A, Crystal Structure Of The Receptor Protein Tyrosine
Phosphatase Mu Ectodomain
Length = 731
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 73/316 (23%), Positives = 126/316 (39%), Gaps = 65/316 (20%)
Query: 411 YIW--LAAQSPRGEGATTPPIPVRTKQYGKTPG------------FGEQALYPNTLYYIW 456
Y+W L A S G+G PI R +Y G + L P+T Y I
Sbjct: 277 YLWIQLNANSINGDG----PIVAREVEYCTASGSWNDRQPVDSTSYKIGHLDPDTEYEIS 332
Query: 457 LAAQSPRGEGATTPPIPV---RTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQIT 513
+ P GEG T P P RTK +P PR ++V + S + I+W+ +
Sbjct: 333 VLLTRP-GEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSRQITIRWEPFGYNVTRCH 391
Query: 514 GYK--VYYT-----QDQSLPMSAWETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVGPGP 566
Y V+Y Q+Q +W+T+ +++ TI++L+P+T ++++ G
Sbjct: 392 SYNLTVHYCYQVGGQEQVREEVSWDTE--NSHPQHTITNLSPYTNVSVKLILMNPEGRKE 449
Query: 567 LSAPVLVKTQQGVPSQ-PRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKPR 625
S ++V+T + +P P + E + L W +PT + I YE+ +
Sbjct: 450 -SQELIVQTDEDLPGAVPTESIQGSTFEEKIFLQWREPTQTYGVITLYEITY-------- 500
Query: 626 DLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVETYSLTGLYPN 685
+AV + + L+ ++ ++G + GLYP
Sbjct: 501 --KAVSSFDPEIDLS----------------------NQSGRVSKLGNETHFLFFGLYPG 536
Query: 686 TLYYIWLAAQSPRGEG 701
T Y + A + +G G
Sbjct: 537 TTYSFTIRASTAKGFG 552
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 50/130 (38%), Gaps = 22/130 (16%)
Query: 255 YTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQ 314
+T+ NLSPYT +I +N GR S ++ T E PG P + + +Q
Sbjct: 424 HTITNLSPYTNVSVKLILMNPEGR-KESQELIVQTDEDLPGAVPTESIQGSTFEEKIFLQ 482
Query: 315 WDEPETPNGQIT---------------------AKHHRRIGLVETYSLTGLYPNTLYYIW 353
W EP G IT + ++G + GLYP T Y
Sbjct: 483 WREPTQTYGVITLYEITYKAVSSFDPEIDLSNQSGRVSKLGNETHFLFFGLYPGTTYSFT 542
Query: 354 LAAQSPRGEG 363
+ A + +G G
Sbjct: 543 IRASTAKGFG 552
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 100/271 (36%), Gaps = 48/271 (17%)
Query: 543 ISDLTPHTIYTIRVQAFTSVGPGPLSAP---VLVKTQQGVPSQ-PRDLRAVDIQETAVTL 598
I L P T Y I V T G G +P + +T+ P + PR L V+++ +T+
Sbjct: 320 IGHLDPDTEYEISV-LLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSRQITI 378
Query: 599 AWSKPTHSGENIISYELYWNDTYAKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYW 658
W ++ SY L + Y G+ + E+ W
Sbjct: 379 RWEPFGYNVTRCHSYNLTVHYCYQV-----------------------GGQEQVREEVSW 415
Query: 659 NDTYAKAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGA 718
+ + +H ++T L P T + L +P G + I V+T + +PGA
Sbjct: 416 DTENSHPQH----------TITNLSPYTNVSVKLILMNPEGRKESQELI-VQTDEDLPGA 464
Query: 719 PPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFV-------ETGRSDSEASIVTL 771
P I + W P ++ G I Y++ + E S+ + L
Sbjct: 465 VPTESIQGSTFEEKIFLQWREP--TQTYGVITLYEITYKAVSSFDPEIDLSNQSGRVSKL 522
Query: 772 KNQTSFVLDELKKWTEYRIWVLAGTSIGDGP 802
N+T F+ L T Y + A T+ G GP
Sbjct: 523 GNETHFLFFGLYPGTTYSFTIRASTAKGFGP 553
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 75/301 (24%), Positives = 122/301 (40%), Gaps = 47/301 (15%)
Query: 447 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPE 506
L P T + L +P G + I V+T + PG P + + +QW EP
Sbjct: 429 LSPYTNVSVKLILMNPEGRKESQELI-VQTDEDLPGAVPTESIQGSTFEEKIFLQWREPT 487
Query: 507 TPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLTTISDLT-----------PHTIYTIR 555
G IT Y++ Y +S+++ ++ +NQ +S L P T Y+
Sbjct: 488 QTYGVITLYEITYKA-----VSSFDPEIDLSNQSGRVSKLGNETHFLFFGLYPGTTYSFT 542
Query: 556 VQAFTSVGPGPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTL-AWSKPTHS-GENIISY 613
++A T+ G GP A T+ PS P + +T T+ KP HS G + Y
Sbjct: 543 IRASTAKGFGP-PATNQFTTKISAPSMPAYELETPLNQTDNTVTVMLKPAHSRGAPVSVY 601
Query: 614 ELYWNDTYAKPRDLRAVDIQETAVTLAWSKPTH-SGENIISYELYWNDTY----AKAKHH 668
++ + +PR + + T + + P H ++++ + Y+ + +A
Sbjct: 602 QIVVEE--ERPRRTK----KTTEILKCYPVPIHFQNASLLNSQYYFAAEFPADSLQAAQP 655
Query: 669 RRIGLVETYS---LTGLYPNTLYYIWL-AAQSPRGE-----------GATTP-PIPVRTK 712
IG +TY+ T L P Y I+ AA GE GA TP P+P K
Sbjct: 656 FTIGDNKTYNGYWNTPLLPYKSYRIYFQAASRANGETKIDCVQVATKGAATPKPVPEPEK 715
Query: 713 Q 713
Q
Sbjct: 716 Q 716
Score = 36.6 bits (83), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 90/421 (21%), Positives = 161/421 (38%), Gaps = 53/421 (12%)
Query: 85 RRGRLA-HAVRQVADPVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVK-WRKG 142
+G LA V+ + P R P I +EV C A+G + + W +G
Sbjct: 146 HQGYLAIDEVKVLGHPCTRTPHFLRI---QNVEVNAGQFATFQCSAIGRTVAGDRLWLQG 202
Query: 143 QNIELTPDDKLPVG---RNVLTLDRVT----ESENYTCIAASVLGVIETSTIVKVQCKYA 195
++ P ++ V R + + + V ++ Y C+ + GV S ++ K
Sbjct: 203 IDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGV-GISNYAELVVKEP 261
Query: 196 PLLTLPVAPLDVKISEVTATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEISGIITTYY 255
P+ P+AP + T ++L+ + + + A+ +++ + +T Y
Sbjct: 262 PV---PIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTASGSWNDRQPVDSTSY 318
Query: 256 TVRNLSPYTEYEFYIIAV--NNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVI 313
+ +L P TEYE ++ G G P T +P PR ++V + S + I
Sbjct: 319 KIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSRQITI 378
Query: 314 QWDEPETPNG------QITAKHHRRIGLVE---------------TYSLTGLYPNTLYYI 352
+W EP N +T + ++G E +++T L P T +
Sbjct: 379 RW-EPFGYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTITNLSPYTNVSV 437
Query: 353 WLAAQSPRGEGATTPPIPVRTKQY--GKTPGFGEQAAKHHRRIGL-----VETYSLTGLY 405
L +P G + I V+T + G P Q + +I L +TY + LY
Sbjct: 438 KLILMNPEGRKESQELI-VQTDEDLPGAVPTESIQGSTFEEKIFLQWREPTQTYGVITLY 496
Query: 406 PNTLYYIWLAAQSPRGEGATTPPIPVRTKQYGKTPGFGEQALYPNTLYYIWLAAQSPRGE 465
T Y +++ P + + R + G F LYP T Y + A + +G
Sbjct: 497 EIT--YKAVSSFDPEIDLSNQSG---RVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGF 551
Query: 466 G 466
G
Sbjct: 552 G 552
Score = 35.8 bits (81), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 90/240 (37%), Gaps = 37/240 (15%)
Query: 676 TYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPV---RTKQYVPGAPPQNVSCEPLSSTS 732
+Y + L P+T Y I + P GEG T P P RTK P P+ + + S
Sbjct: 317 SYKIGHLDPDTEYEISVLLTRP-GEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSRQ 375
Query: 733 IRISWEPPPVERSNGH----IVYYKLQFVETGRSDSEASIVTLKNQTSFVLDELKKWTEY 788
I I WEP + H V+Y Q + E S T + + L +T
Sbjct: 376 ITIRWEPFGYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTITNLSPYTNV 435
Query: 789 RIWVLAGTSIGDGPSSYPITIRTHEDDPSEVCPTQN------------DFRKNKKTNGS- 835
+ ++ G S + ++T ED P V PT++ +R+ +T G
Sbjct: 436 SVKLILMNPEGR-KESQELIVQTDEDLPGAV-PTESIQGSTFEEKIFLQWREPTQTYGVI 493
Query: 836 -----NFKGGYLNDPMRFDVSD--------GGALELNVTGLQPDTIYTIQVAALTRKGDG 882
+K DP D+S+ G GL P T Y+ + A T KG G
Sbjct: 494 TLYEITYKAVSSFDP-EIDLSNQSGRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFG 552
>pdb|3LPW|A Chain A, Crystal Structure Of The Fniii-Tandem A77-A78 From The
A-Band Of Titin
pdb|3LPW|B Chain B, Crystal Structure Of The Fniii-Tandem A77-A78 From The
A-Band Of Titin
Length = 197
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 77/182 (42%), Gaps = 20/182 (10%)
Query: 198 LTLPVAPLDVKISEVTATSVRLDWTYP----SETLLYYVIQYKPKAANTPYSEIS-GIIT 252
+ P P D+K+ EVT TSV L W P + Y+++ K ++ YS ++
Sbjct: 3 MDTPGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVE-KRESTRKAYSTVATNCHK 61
Query: 253 TYYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMV 312
T + V L Y F ++A N G G P+ A P P + + ++ +++
Sbjct: 62 TSWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASERP-LPPGKITLMDVTRNSVS 120
Query: 313 IQWDEPETPNG--------QITAKHHRRIGLVETY-----SLTGLYPNTLYYIWLAAQSP 359
+ W++PE G ++ K + T ++TGL Y ++AQ+
Sbjct: 121 LSWEKPEHDGGSRILGYIVEMQTKGSDKWATCATVKVTEATITGLIQGEEYSFRVSAQNE 180
Query: 360 RG 361
+G
Sbjct: 181 KG 182
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 72/160 (45%), Gaps = 13/160 (8%)
Query: 619 DTYAKPRDLRAVDIQETAVTLAWSKP-THSGENIISYELYWNDTYAKAKHHRRIGLVET- 676
DT P+DL+ ++ +T+VTL W P G I +Y + ++ KA +T
Sbjct: 4 DTPGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNCHKTS 63
Query: 677 YSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGA----PPQNVSCEPLSSTS 732
+ + L YY + A++ G G +P T + V + PP ++ ++ S
Sbjct: 64 WKVDQLQEGCSYYFRVLAENEYGIG-----LPAETAESVKASERPLPPGKITLMDVTRNS 118
Query: 733 IRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLK 772
+ +SWE P E G + + ++T SD A+ T+K
Sbjct: 119 VSLSWEKP--EHDGGSRILGYIVEMQTKGSDKWATCATVK 156
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 60/132 (45%), Gaps = 6/132 (4%)
Query: 485 PRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLT-TI 543
P+D++V+ ++ +++ + WD P G + K Y + + A+ T + ++ + +
Sbjct: 9 PQDLKVKEVTKTSVTLTWDPPLLDGG--SKIKNYIVEKRESTRKAYSTVATNCHKTSWKV 66
Query: 544 SDLTPHTIYTIRVQAFTSVGPG-PLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLAWSK 602
L Y RV A G G P VK + P P + +D+ +V+L+W K
Sbjct: 67 DQLQEGCSYYFRVLAENEYGIGLPAETAESVKASE-RPLPPGKITLMDVTRNSVSLSWEK 125
Query: 603 PTHS-GENIISY 613
P H G I+ Y
Sbjct: 126 PEHDGGSRILGY 137
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 88/184 (47%), Gaps = 23/184 (12%)
Query: 718 APPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSF 777
PPQ++ + ++ TS+ ++W+PP ++ I Y ++ E+ R + +++ T ++TS+
Sbjct: 7 GPPQDLKVKEVTKTSVTLTWDPPLLD-GGSKIKNYIVEKRESTRK-AYSTVATNCHKTSW 64
Query: 778 VLDELKKWTEYRIWVLAGTSIGDG-PSSYPITIRTHED--DPSEVCPTQNDFRKNK---- 830
+D+L++ Y VLA G G P+ +++ E P ++ T D +N
Sbjct: 65 KVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASERPLPPGKI--TLMDVTRNSVSLS 122
Query: 831 ----KTNGSNFKGGYLNDPMRFDVSDGGA-------LELNVTGLQPDTIYTIQVAALTRK 879
+ +G + GY+ + M+ SD A E +TGL Y+ +V+A K
Sbjct: 123 WEKPEHDGGSRILGYIVE-MQTKGSDKWATCATVKVTEATITGLIQGEEYSFRVSAQNEK 181
Query: 880 GDGD 883
G D
Sbjct: 182 GISD 185
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 52/110 (47%), Gaps = 8/110 (7%)
Query: 119 LDSPLNLSCVAVGSPMPFVKW-RKGQNIELTPDDKLPVGRNVLTLDRVTESEN----YTC 173
L LSC VG P+P +KW R G+ + + K+ TL +TE + YTC
Sbjct: 21 LGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTC 80
Query: 174 IAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISEVTATSVRLDWTY 223
IA + +G +ETS+ + +Q P P PL K +++RL Y
Sbjct: 81 IATNEVGEVETSSKLLLQA--TPQFH-PGYPLKEKYYGAVGSTLRLHVMY 127
>pdb|2CK2|A Chain A, Structure Of Core-Swapped Mutant Of Fibronectin
pdb|2CK2|B Chain B, Structure Of Core-Swapped Mutant Of Fibronectin
Length = 96
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 204 PLDVKISEVTATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEIS--GIITTYYTVRNLS 261
P D+++ VT TS + W P+ T+ Y + Y N+P EI+ G +T YT+ L
Sbjct: 5 PRDIEVVAVTPTSALISWDAPAVTIRYIRLTYGETGGNSPVQEITLPGSKST-YTISGLK 63
Query: 262 PYTEYEFYIIAVNNLGRGPPSS-PAVI 287
P T+Y + +V G P SS PA I
Sbjct: 64 PGTDYTVTLYSVTGRGDSPASSKPASI 90
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 720 PQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFVL 779
P+++ ++ TS ISW+ P V I Y +L + ETG + I +++++ +
Sbjct: 5 PRDIEVVAVTPTSALISWDAPAVT-----IRYIRLTYGETGGNSPVQEITLPGSKSTYTI 59
Query: 780 DELKKWTEYRIWVLAGTSIGDGPSS 804
LK T+Y + + + T GD P+S
Sbjct: 60 SGLKPGTDYTVTLYSVTGRGDSPAS 84
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 11/76 (14%)
Query: 298 PRDVQVRPLSSSTMVIQWDEPET-----------PNGQITAKHHRRIGLVETYSLTGLYP 346
PRD++V ++ ++ +I WD P G + G TY+++GL P
Sbjct: 5 PRDIEVVAVTPTSALISWDAPAVTIRYIRLTYGETGGNSPVQEITLPGSKSTYTISGLKP 64
Query: 347 NTLYYIWLAAQSPRGE 362
T Y + L + + RG+
Sbjct: 65 GTDYTVTLYSVTGRGD 80
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 624 PRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRI--GLVETYSLTG 681
PRD+ V + T+ ++W P + I L + +T + G TY+++G
Sbjct: 5 PRDIEVVAVTPTSALISWDAPAVTIRYI---RLTYGETGGNSPVQEITLPGSKSTYTISG 61
Query: 682 LYPNTLYYIWLAAQSPRGE 700
L P T Y + L + + RG+
Sbjct: 62 LKPGTDYTVTLYSVTGRGD 80
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 485 PRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLT-TI 543
PRD++V ++ ++ +I WD P +T + T ++ S + + ++ T TI
Sbjct: 5 PRDIEVVAVTPTSALISWDAP-----AVTIRYIRLTYGETGGNSPVQEITLPGSKSTYTI 59
Query: 544 SDLTPHTIYTIRVQAFTSVGPGPLSA 569
S L P T YT+ + + T G P S+
Sbjct: 60 SGLKPGTDYTVTLYSVTGRGDSPASS 85
>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homo1
Length = 118
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 117 VMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRN-VLTL--DRVTESENYTC 173
V +D LSCVA GSP+P + WRK + T D ++ N VL + ++ ++ YTC
Sbjct: 20 VAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRYAKLGDTGRYTC 79
Query: 174 IAASVLGVIETSTIVKVQ 191
IA++ G S ++VQ
Sbjct: 80 IASTPSGEATWSAYIEVQ 97
>pdb|2VKX|A Chain A, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|B Chain B, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|C Chain C, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|D Chain D, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|E Chain E, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|F Chain F, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
Length = 209
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 48/100 (48%), Gaps = 10/100 (10%)
Query: 483 TAPRDVQVRPLSSSTMVIQWDEPETPNGQ-ITGYKVYYTQDQSLPMSAWETQVVDNNQ-- 539
++P QV P SS+ V Q+DEPE G I YK + +++ W ++ D +
Sbjct: 10 SSPSIDQVEPYSSTAQV-QFDEPEATGGVPILKYKAEW---RAVGEEVWHSKWYDAKEAS 65
Query: 540 ---LTTISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQ 576
+ TI L P T Y +R+ A G G +SA KTQ
Sbjct: 66 MEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQ 105
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 858 LNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKT 892
+ + GL+P+T Y +++AAL KG G+ S KT
Sbjct: 70 VTIVGLKPETTYAVRLAALNGKGLGEISAASEFKT 104
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 19/97 (19%)
Query: 296 TAPRDVQVRPLSSSTMVIQWDEPETPNGQITAKHH---RRIG---------------LVE 337
++P QV P SS+ V Q+DEPE G K+ R +G +
Sbjct: 10 SSPSIDQVEPYSSTAQV-QFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEG 68
Query: 338 TYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTK 374
++ GL P T Y + LAA + +G G + +T+
Sbjct: 69 IVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQ 105
>pdb|2VKW|A Chain A, Human Ncam, Fn3 Domains 1 And 2
pdb|2VKW|B Chain B, Human Ncam, Fn3 Domains 1 And 2
Length = 209
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 48/100 (48%), Gaps = 10/100 (10%)
Query: 483 TAPRDVQVRPLSSSTMVIQWDEPETPNGQ-ITGYKVYYTQDQSLPMSAWETQVVDNNQ-- 539
++P QV P SS+ V Q+DEPE G I YK + +++ W ++ D +
Sbjct: 10 SSPSIDQVEPYSSTAQV-QFDEPEATGGVPILKYKAEW---RAVGEEVWHSKWYDAKEAS 65
Query: 540 ---LTTISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQ 576
+ TI L P T Y +R+ A G G +SA KTQ
Sbjct: 66 MEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQ 105
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 858 LNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKT 892
+ + GL+P+T Y +++AAL KG G+ S KT
Sbjct: 70 VTIVGLKPETTYAVRLAALNGKGLGEISAASEFKT 104
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 19/97 (19%)
Query: 296 TAPRDVQVRPLSSSTMVIQWDEPETPNGQITAKHH---RRIG---------------LVE 337
++P QV P SS+ V Q+DEPE G K+ R +G +
Sbjct: 10 SSPSIDQVEPYSSTAQV-QFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEG 68
Query: 338 TYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTK 374
++ GL P T Y + LAA + +G G + +T+
Sbjct: 69 IVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQ 105
>pdb|3T1W|A Chain A, Structure Of The Four-Domain Fragment Fn7b89 Of Oncofetal
Fibronectin
Length = 375
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 73/295 (24%), Positives = 114/295 (38%), Gaps = 56/295 (18%)
Query: 498 MVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLTTISDLTPHTIYTIRVQ 557
+ + W+ TP+ ITGY++ T ++ E V + T +L+P Y + V
Sbjct: 20 LTVSWERSTTPD--ITGYRITTTPTNGQQGNSLEEVVHADQSSCTFDNLSPGLEYNVSVY 77
Query: 558 AFTSVGPGPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYW 617
+V S P+ VP Q DL VDI ++++ L W+ P +S II Y +
Sbjct: 78 ---TVKDDKESVPISDTIIPEVP-QLTDLSFVDITDSSIGLRWT-PLNSS-TIIGYRI-- 129
Query: 618 NDTYAKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVETY 677
T V +GE I +E + + + V Y
Sbjct: 130 -----------------TVVA--------AGEGIPIFEDFVDSS------------VGYY 152
Query: 678 SLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISW 737
++TGL P Y I + GE A P Q PP ++ + ++R++W
Sbjct: 153 TVTGLEPGIDYDISVITLINGGESA-----PTTLTQQTAVPPPTDLRFTNIGPDTMRVTW 207
Query: 738 EPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFVLDELKKWTEYRIWV 792
PPP +V Y V+ +E SI N + VL L TEY + V
Sbjct: 208 APPPSIDLTNFLVRYSP--VKNEEDVAELSISPSDN--AVVLTNLLPGTEYVVSV 258
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 13/85 (15%)
Query: 203 APLDVKISEVTATSVRLDWTYPSETLLYYVIQY-------KPKAANTPYSEISGIITTYY 255
+P + S++TA S + W P T+ Y I++ +P+ P+S S
Sbjct: 280 SPTGIDFSDITANSFTVHWIAPRATITGYRIRHHPEHFSGRPREDRVPHSRNS------I 333
Query: 256 TVRNLSPYTEYEFYIIAVNNLGRGP 280
T+ NL+P TEY I+A+N P
Sbjct: 334 TLTNLTPGTEYVVSIVALNGREESP 358
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 7/115 (6%)
Query: 206 DVKISEVTATSVRLDWT-YPSETLLYYVIQYKPKAANTP-YSEISGIITTYYTVRNLSPY 263
D+ ++T +S+ L WT S T++ Y I P + + YYTV L P
Sbjct: 101 DLSFVDITDSSIGLRWTPLNSSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPG 160
Query: 264 TEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEP 318
+Y+ +I + N G S+P +T P P D++ + TM + W P
Sbjct: 161 IDYDISVITLINGGE---SAPTTLTQQTAVP--PPTDLRFTNIGPDTMRVTWAPP 210
Score = 32.7 bits (73), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 58/133 (43%), Gaps = 13/133 (9%)
Query: 447 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPE 506
L P T Y + +++ + E P+R +Q +P + +++++ + W
Sbjct: 248 LLPGTEYVVSVSSVYEQHEST-----PLRGRQKTGLDSPTGIDFSDITANSFTVHW---I 299
Query: 507 TPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVGPGP 566
P ITGY++ + + E +V + T+++LTP T Y + + A G
Sbjct: 300 APRATITGYRIRH-HPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALN----GR 354
Query: 567 LSAPVLVKTQQGV 579
+P+L+ Q V
Sbjct: 355 EESPLLIGQQSTV 367
>pdb|2HAZ|A Chain A, Crystal Structure Of The First Fibronectin Domain Of Human
Ncam1
Length = 105
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 48/100 (48%), Gaps = 10/100 (10%)
Query: 483 TAPRDVQVRPLSSSTMVIQWDEPETPNGQ-ITGYKVYYTQDQSLPMSAWETQVVDNNQ-- 539
++P QV P SS+ V Q+DEPE G I YK + +++ W ++ D +
Sbjct: 8 SSPSIDQVEPYSSTAQV-QFDEPEATGGVPILKYKAEW---RAVGEEVWHSKWYDAKEAS 63
Query: 540 ---LTTISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQ 576
+ TI L P T Y +R+ A G G +SA KTQ
Sbjct: 64 MEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQ 103
Score = 32.7 bits (73), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 858 LNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKT 892
+ + GL+P+T Y +++AAL KG G+ S KT
Sbjct: 68 VTIVGLKPETTYAVRLAALNGKGLGEISAASEFKT 102
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 19/97 (19%)
Query: 296 TAPRDVQVRPLSSSTMVIQWDEPETPNGQITAKHH---RRIG---------------LVE 337
++P QV P SS+ V Q+DEPE G K+ R +G +
Sbjct: 8 SSPSIDQVEPYSSTAQV-QFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEG 66
Query: 338 TYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTK 374
++ GL P T Y + LAA + +G G + +T+
Sbjct: 67 IVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQ 103
>pdb|4GH7|B Chain B, Crystal Structure Of Anticalin N7a In Complex With
Oncofetal Fibronectin Fragment Fn7b8
pdb|4GH7|D Chain D, Crystal Structure Of Anticalin N7a In Complex With
Oncofetal Fibronectin Fragment Fn7b8
Length = 285
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 73/295 (24%), Positives = 114/295 (38%), Gaps = 56/295 (18%)
Query: 498 MVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLTTISDLTPHTIYTIRVQ 557
+ + W+ TP+ ITGY++ T ++ E V + T +L+P Y + V
Sbjct: 20 LTVSWERSTTPD--ITGYRITTTPTNGQQGNSLEEVVHADQSSCTFDNLSPGLEYNVSVY 77
Query: 558 AFTSVGPGPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYW 617
+V S P+ VP Q DL VDI ++++ L W+ P +S II Y +
Sbjct: 78 ---TVKDDKESVPISDTIIPEVP-QLTDLSFVDITDSSIGLRWT-PLNSS-TIIGYRI-- 129
Query: 618 NDTYAKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVETY 677
T V +GE I +E + + + V Y
Sbjct: 130 -----------------TVVA--------AGEGIPIFEDFVDSS------------VGYY 152
Query: 678 SLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISW 737
++TGL P Y I + GE A P Q PP ++ + ++R++W
Sbjct: 153 TVTGLEPGIDYDISVITLINGGESA-----PTTLTQQTAVPPPTDLRFTNIGPDTMRVTW 207
Query: 738 EPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFVLDELKKWTEYRIWV 792
PPP +V Y V+ +E SI N + VL L TEY + V
Sbjct: 208 APPPSIDLTNFLVRYSP--VKNEEDVAELSISPSDN--AVVLTNLLPGTEYVVSV 258
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 7/115 (6%)
Query: 206 DVKISEVTATSVRLDWT-YPSETLLYYVIQYKPKAANTP-YSEISGIITTYYTVRNLSPY 263
D+ ++T +S+ L WT S T++ Y I P + + YYTV L P
Sbjct: 101 DLSFVDITDSSIGLRWTPLNSSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPG 160
Query: 264 TEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEP 318
+Y+ +I + N G S+P +T P P D++ + TM + W P
Sbjct: 161 IDYDISVITLINGGE---SAPTTLTQQTAVP--PPTDLRFTNIGPDTMRVTWAPP 210
>pdb|2E3V|A Chain A, Crystal Structure Of The First Fibronectin Type Iii Domain
Of Neural Cell Adhesion Molecule Splicing Isoform From
Human Muscle Culture Lambda-4.4
pdb|2E3V|B Chain B, Crystal Structure Of The First Fibronectin Type Iii Domain
Of Neural Cell Adhesion Molecule Splicing Isoform From
Human Muscle Culture Lambda-4.4
pdb|2E3V|C Chain C, Crystal Structure Of The First Fibronectin Type Iii Domain
Of Neural Cell Adhesion Molecule Splicing Isoform From
Human Muscle Culture Lambda-4.4
Length = 122
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 489 QVRPLSSSTMVIQWDEPETPNGQ-ITGYKVYYTQDQSLPMSAWETQVVDNNQ-----LTT 542
QV P SS T +Q+DEPE G I YK + +++ W ++ D + + T
Sbjct: 15 QVEPYSS-TAQVQFDEPEATGGVPILKYKAEW---RAVGEEVWHSKWYDAKEASXEGIVT 70
Query: 543 ISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQ 576
I L P T Y +R+ A G G +SA KTQ
Sbjct: 71 IVGLKPETTYAVRLAALNGKGLGEISAASEFKTQ 104
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 858 LNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKT 892
+ + GL+P+T Y +++AAL KG G+ S KT
Sbjct: 69 VTIVGLKPETTYAVRLAALNGKGLGEISAASEFKT 103
>pdb|2ED8|A Chain A, Solution Structure Of The Second Fibronectin Type Iii
Domain Of Human Netrin Receptor Dcc
Length = 106
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 721 QNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFVLD 780
+N+ S TSI I+WEPP +NG + Y+L E + V + S+ L+
Sbjct: 12 ENLQAVSTSPTSILITWEPPAY--ANGPVQGYRLFCTEVSTGKEQNIEV---DGLSYKLE 66
Query: 781 ELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHED 814
LKK+TEY + LA G G S+ IT+ T D
Sbjct: 67 GLKKFTEYSLRFLAYNRYGPGVSTDDITVVTLSD 100
Score = 37.0 bits (84), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 486 RDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLT-TIS 544
++Q S ++++I W+ P NG + GY+++ T+ +S + Q ++ + L+ +
Sbjct: 12 ENLQAVSTSPTSILITWEPPAYANGPVQGYRLFCTE-----VSTGKEQNIEVDGLSYKLE 66
Query: 545 DLTPHTIYTIRVQAFTSVGPGPLSAPVLVKT 575
L T Y++R A+ GPG + + V T
Sbjct: 67 GLKKFTEYSLRFLAYNRYGPGVSTDDITVVT 97
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 625 RDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRI-GLVETYSLTGLY 683
+L+AV T++ + W P ++ + Y L+ + + + + GL +Y L GL
Sbjct: 12 ENLQAVSTSPTSILITWEPPAYANGPVQGYRLFCTEVSTGKEQNIEVDGL--SYKLEGLK 69
Query: 684 PNTLYYIWLAAQSPRGEGATTPPIPVRT 711
T Y + A + G G +T I V T
Sbjct: 70 KFTEYSLRFLAYNRYGPGVSTDDITVVT 97
>pdb|1BQU|A Chain A, Cytokyne-Binding Region Of Gp130
pdb|1BQU|B Chain B, Cytokyne-Binding Region Of Gp130
Length = 215
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 8/82 (9%)
Query: 205 LDVKISEVTATSVRLDWTYPS---ETLLYYVIQYKPKAANTPYSEI----SGIITTYYTV 257
L V SE ++ ++L WT PS +L Y IQY+ K A+T +S+I + + +TV
Sbjct: 110 LSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDAST-WSQIPPEDTASTRSSFTV 168
Query: 258 RNLSPYTEYEFYIIAVNNLGRG 279
++L P+TEY F I + G+G
Sbjct: 169 QDLKPFTEYVFRIRCMKEDGKG 190
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 89/207 (42%), Gaps = 17/207 (8%)
Query: 623 KPRDLRAVDIQETAVTLAWS--KPTHSGENIISYELYWNDTYAKAKHHRRIGLVETYSLT 680
KP++L + + + W + TH N + +A K R T +
Sbjct: 10 KPKNLSCIVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYS 69
Query: 681 GLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQNVSC---EPLSSTSIRISW 737
+Y + +W+ A++ G+ T+ I V PP N+S E LSS ++++W
Sbjct: 70 TVYFVNIE-VWVEAENALGK-VTSDHINFDPVYKVKPNPPHNLSVINSEELSSI-LKLTW 126
Query: 738 EPPPVERSNGHIVYYKLQFVETGRSDSEASI---VTLKNQTSFVLDELKKWTEYRIWVLA 794
P ++ + I+ Y +Q+ T + + + I T ++SF + +LK +TEY +
Sbjct: 127 TNPSIK--SVIILKYNIQY-RTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRC 183
Query: 795 GTSIGDG---PSSYPITIRTHEDDPSE 818
G G S + T+ED PS+
Sbjct: 184 MKEDGKGYWSDWSEEASGITYEDRPSK 210
>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
pdb|3MTR|B Chain B, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
Length = 215
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 48/100 (48%), Gaps = 10/100 (10%)
Query: 483 TAPRDVQVRPLSSSTMVIQWDEPETPNGQ-ITGYKVYYTQDQSLPMSAWETQVVDNNQ-- 539
++P QV P SS+ V Q+DEPE G I YK + +++ W ++ D +
Sbjct: 115 SSPSIDQVEPYSSTAQV-QFDEPEATGGVPILKYKAEW---RAVGEEVWHSKWYDAKEAS 170
Query: 540 ---LTTISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQ 576
+ TI L P T Y +R+ A G G +SA KTQ
Sbjct: 171 MEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQ 210
Score = 36.2 bits (82), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 87/202 (43%), Gaps = 30/202 (14%)
Query: 194 YAPLLTLPVAPLDVKISEVTATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEISGIITT 253
YAP L PVA + ++V T YPS T+ ++ ++N YS I T
Sbjct: 18 YAPKLQGPVAVYTWEGNQVNITCEVF--AYPSATISWFRDGQLLPSSN--YSNIKIYNTP 73
Query: 254 YYTVRNLSPYTEYEF---YIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLSSST 310
+ ++P +E +F AVN +G+ S ++ +T ++P QV P SS+
Sbjct: 74 SASYLEVTPDSENDFGNYNCTAVNRIGQ--ESLEFILVQADTP--SSPSIDQVEPYSSTA 129
Query: 311 MVIQWDEPETPNGQITAKHH---RRIG---------------LVETYSLTGLYPNTLYYI 352
V Q+DEPE G K+ R +G + ++ GL P T Y +
Sbjct: 130 QV-QFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAV 188
Query: 353 WLAAQSPRGEGATTPPIPVRTK 374
LAA + +G G + +T+
Sbjct: 189 RLAALNGKGLGEISAASEFKTQ 210
Score = 33.1 bits (74), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 858 LNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKT 892
+ + GL+P+T Y +++AAL KG G+ S KT
Sbjct: 175 VTIVGLKPETTYAVRLAALNGKGLGEISAASEFKT 209
>pdb|3L5H|A Chain A, Crystal Structure Of The Full Ectodomain Of Human Gp130:
New Insights Into The Molecular Assembly Of Receptor
Complexes
Length = 589
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 54/104 (51%), Gaps = 11/104 (10%)
Query: 205 LDVKISEVTATSVRLDWTYPS---ETLLYYVIQYKPKAANTPYSEI----SGIITTYYTV 257
L V SE ++ ++L WT PS +L Y IQY+ K A+T +S+I + + +TV
Sbjct: 205 LSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDAST-WSQIPPEDTASTRSSFTV 263
Query: 258 RNLSPYTEYEFYIIAVNNLGRG---PPSSPAVITTGETEPGTAP 298
++L P+TEY F I + G+G S A T E P AP
Sbjct: 264 QDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKAP 307
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
Query: 472 IPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDE--PETPNGQITGYKVYYTQDQSLPMSA 529
I KQ P P V+ + + + V++WD+ + NG I Y ++Y +++ +
Sbjct: 487 IKAYLKQAPPSKGPT-VRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFY---RTIIGNE 542
Query: 530 WETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVG 563
V ++ T+S LT T+Y +R+ A+T G
Sbjct: 543 TAVNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEG 576
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 95/230 (41%), Gaps = 35/230 (15%)
Query: 155 VGRNVLTLDRVTESENYTCIAASVLGVIETSTIVKVQCKYA---PLLTLPVAPLDVKISE 211
V LT++ + T +++G + + + C + P++ L P D
Sbjct: 359 VNATKLTVNLTNDRYLATLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKAFPKD----- 413
Query: 212 VTATSVRLDWTYPSETLLYYVIQYKPKAANTP----YSEISGIITTYYTVRNLSPYTEYE 267
+ ++WT P E++ Y++++ + P + + G + Y NL+ E +
Sbjct: 414 ---NMLWVEWTTPRESVKKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLA---ESK 467
Query: 268 FYIIAVNNLGRGPPSSPAVITT--GETEPGTAPRDVQVRPLSSSTMVIQWDE--PETPNG 323
Y+I V + P SP I + P P V+ + + + V++WD+ + NG
Sbjct: 468 CYLITVTPVYADGPGSPESIKAYLKQAPPSKGPT-VRTKKVGKNEAVLEWDQLPVDVQNG 526
Query: 324 QIT--AKHHRRIGLVET----------YSLTGLYPNTLYYIWLAAQSPRG 361
I +R I ET Y+L+ L +TLY + +AA + G
Sbjct: 527 FIRNYTIFYRTIIGNETAVNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEG 576
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 89/207 (42%), Gaps = 17/207 (8%)
Query: 623 KPRDLRAVDIQETAVTLAWS--KPTHSGENIISYELYWNDTYAKAKHHRRIGLVETYSLT 680
KP++L + + + W + TH N + +A K R T +
Sbjct: 105 KPKNLSCIVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYS 164
Query: 681 GLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQNVSC---EPLSSTSIRISW 737
+Y + +W+ A++ G+ T+ I V PP N+S E LSS ++++W
Sbjct: 165 TVYFVNIE-VWVEAENALGK-VTSDHINFDPVYKVKPNPPHNLSVINSEELSSI-LKLTW 221
Query: 738 EPPPVERSNGHIVYYKLQFVETGRSDSEASI---VTLKNQTSFVLDELKKWTEYRIWVLA 794
P ++ + I+ Y +Q+ T + + + I T ++SF + +LK +TEY +
Sbjct: 222 TNPSIK--SVIILKYNIQY-RTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRC 278
Query: 795 GTSIGDG---PSSYPITIRTHEDDPSE 818
G G S + T+ED PS+
Sbjct: 279 MKEDGKGYWSDWSEEASGITYEDRPSK 305
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 86/377 (22%), Positives = 125/377 (33%), Gaps = 78/377 (20%)
Query: 495 SSTMVIQWDEPETPNGQITGYKVYY-TQDQSLPMSAWETQVVDNNQLTTISDLTPHTIYT 553
SS + + W P + I Y + Y T+D S T+ DL P T Y
Sbjct: 214 SSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYV 273
Query: 554 IRVQAFTSVGPGPLSAPVLVKTQQGVPSQPRDLRA------VDIQET----AVTLAWSK- 602
R++ G G S + G+ + R +A +D T V L W
Sbjct: 274 FRIRCMKEDGKGYWSD--WSEEASGITYEDRPSKAPSFWYKIDPSHTQGYRTVQLVWKTL 331
Query: 603 -PTHSGENIISYEL---YW-------------------NDTYAKPRDLR----------- 628
P + I+ YE+ W ND Y +R
Sbjct: 332 PPFEANGKILDYEVTLTRWKSHLQNYTVNATKLTVNLTNDRYLATLTVRNLVGKSDAAVL 391
Query: 629 ---AVDIQET----------AVTLAWSKPTHSGENIISYELYWNDTYAKA----KHHRRI 671
A D Q T + W + T E++ Y L W KA +
Sbjct: 392 TIPACDFQATHPVMDLKAFPKDNMLWVEWTTPRESVKKYILEWCVLSDKAPCITDWQQED 451
Query: 672 GLVE-TYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQN---VSCEP 727
G V TY L + Y I + G G+ P K Y+ APP V +
Sbjct: 452 GTVHRTYLRGNLAESKCYLITVTPVYADGPGS-----PESIKAYLKQAPPSKGPTVRTKK 506
Query: 728 LSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFVLDELKKWTE 787
+ + W+ PV+ NG I Y + F T + E ++ + T + L L T
Sbjct: 507 VGKNEAVLEWDQLPVDVQNGFIRNYTI-FYRTIIGN-ETAVNVDSSHTEYTLSSLTSDTL 564
Query: 788 YRIWVLAGTSIG--DGP 802
Y + + A T G DGP
Sbjct: 565 YMVRMAAYTDEGGKDGP 581
>pdb|1WFN|A Chain A, The Fourth Fn3 Domain Of Human Sidekick-2
Length = 119
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 25/127 (19%)
Query: 464 GEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQ 523
G ++ P VRT + PG + + +++ + W EP NG +TGY++
Sbjct: 1 GSSGSSGPQLVRTHEDVPGPVGH-LSFSEILDTSLKVSWQEPGEKNGILTGYRI------ 53
Query: 524 SLPMSAWETQVVDNNQLT----------TISDLTPHTIYTIRVQAFTSVGPGPLSAPVLV 573
+WE N ++T ++ LT T YTI V A TS G G +SA +
Sbjct: 54 -----SWEEYNRTNTRVTHYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSASTI- 107
Query: 574 KTQQGVP 580
GVP
Sbjct: 108 --SSGVP 112
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 3/103 (2%)
Query: 699 GEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVE 758
G ++ P VRT + VPG P ++S + TS+++SW+ P NG + Y++ + E
Sbjct: 1 GSSGSSGPQLVRTHEDVPG-PVGHLSFSEILDTSLKVSWQEPG--EKNGILTGYRISWEE 57
Query: 759 TGRSDSEASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDG 801
R+++ + + + L T Y I V A TS G G
Sbjct: 58 YNRTNTRVTHYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQG 100
Score = 37.0 bits (84), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 43/103 (41%), Gaps = 16/103 (15%)
Query: 799 GDGPSSYPITIRTHEDDP--------SEVCPTQNDFRKNKKTNGSNFKGGYLNDPMRFDV 850
G SS P +RTHED P SE+ T + + GY ++
Sbjct: 1 GSSGSSGPQLVRTHEDVPGPVGHLSFSEILDTSLKVSWQEPGEKNGILTGYRISWEEYNR 60
Query: 851 SD--------GGALELNVTGLQPDTIYTIQVAALTRKGDGDRS 885
++ LE VTGL T YTI+VAA+T KG G S
Sbjct: 61 TNTRVTHYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVS 103
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 627 LRAVDIQETAVTLAWSKPTHSGENIISYELYW---NDTYAKAKHHRRIGLVETYSLTGLY 683
L +I +T++ ++W +P + Y + W N T + H+ +E Y +TGL
Sbjct: 24 LSFSEILDTSLKVSWQEPGEKNGILTGYRISWEEYNRTNTRVTHYLPNVTLE-YRVTGLT 82
Query: 684 PNTLYYIWLAAQSPRGEG 701
T Y I +AA + +G+G
Sbjct: 83 ALTTYTIEVAAMTSKGQG 100
>pdb|1PVH|A Chain A, Crystal Structure Of Leukemia Inhibitory Factor In Complex
With Gp130
pdb|1PVH|C Chain C, Crystal Structure Of Leukemia Inhibitory Factor In Complex
With Gp130
Length = 201
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 8/82 (9%)
Query: 205 LDVKISEVTATSVRLDWTYPS---ETLLYYVIQYKPKAANTPYSEI----SGIITTYYTV 257
L V SE ++ ++L WT PS +L Y IQY+ K A+T +S+I + + +TV
Sbjct: 106 LSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDAST-WSQIPPEDTASTRSSFTV 164
Query: 258 RNLSPYTEYEFYIIAVNNLGRG 279
++L P+TEY F I + G+G
Sbjct: 165 QDLKPFTEYVFRIRCMKEDGKG 186
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 80/187 (42%), Gaps = 14/187 (7%)
Query: 623 KPRDLRAVDIQETAVTLAWS--KPTHSGENIISYELYWNDTYAKAKHHRRIGLVETYSLT 680
KP++L + + + W + TH N + +A K R T +
Sbjct: 6 KPKNLSCIVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYS 65
Query: 681 GLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQNVSC---EPLSSTSIRISW 737
+Y + +W+ A++ G+ T+ I V PP N+S E LSS ++++W
Sbjct: 66 TVYFVNIE-VWVEAENALGK-VTSDHINFDPVYKVKPNPPHNLSVINSEELSSI-LKLTW 122
Query: 738 EPPPVERSNGHIVYYKLQFVETGRSDSEASI---VTLKNQTSFVLDELKKWTEYRIWVLA 794
P ++ + I+ Y +Q+ T + + + I T ++SF + +LK +TEY +
Sbjct: 123 TNPSIK--SVIILKYNIQY-RTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRC 179
Query: 795 GTSIGDG 801
G G
Sbjct: 180 MKEDGKG 186
>pdb|1BJ8|A Chain A, Third N-Terminal Domain Of Gp130, Nmr, Minimized Average
Structure
Length = 109
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 8/82 (9%)
Query: 205 LDVKISEVTATSVRLDWTYPS---ETLLYYVIQYKPKAANTPYSEI----SGIITTYYTV 257
L V SE ++ ++L WT PS +L Y IQY+ K A+T +S+I + + +TV
Sbjct: 12 LSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDAST-WSQIPPEDTASTRSSFTV 70
Query: 258 RNLSPYTEYEFYIIAVNNLGRG 279
++L P+TEY F I + G+G
Sbjct: 71 QDLKPFTEYVFRIRCMKEDGKG 92
>pdb|3TES|A Chain A, Crystal Structure Of Tencon
pdb|3TES|B Chain B, Crystal Structure Of Tencon
pdb|3TES|C Chain C, Crystal Structure Of Tencon
pdb|3TES|D Chain D, Crystal Structure Of Tencon
Length = 98
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 43/95 (45%), Gaps = 13/95 (13%)
Query: 203 APLDVKISEVTATSVRLDWTYPSETLLYYVIQYKP-----KAAN--TPYSEISGIITTYY 255
AP ++ +SEVT S+RL WT P ++IQY+ +A N P SE S Y
Sbjct: 4 APKNLVVSEVTEDSLRLSWTAPDAAFDSFMIQYQESEKVGEAINLTVPGSERS------Y 57
Query: 256 TVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTG 290
+ L P TEY I V R P S T G
Sbjct: 58 DLTGLKPGTEYTVSIYGVKGGHRSNPLSAEFTTGG 92
>pdb|1P9M|A Chain A, Crystal Structure Of The Hexameric Human Il-6/il-6 Alpha
Receptor/gp130 Complex
Length = 299
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 8/82 (9%)
Query: 205 LDVKISEVTATSVRLDWTYPS---ETLLYYVIQYKPKAANTPYSEI----SGIITTYYTV 257
L V SE ++ ++L WT PS +L Y IQY+ K A+T +S+I + + +TV
Sbjct: 206 LSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDAST-WSQIPPEDTASTRSSFTV 264
Query: 258 RNLSPYTEYEFYIIAVNNLGRG 279
++L P+TEY F I + G+G
Sbjct: 265 QDLKPFTEYVFRIRCMKEDGKG 286
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 80/187 (42%), Gaps = 14/187 (7%)
Query: 623 KPRDLRAVDIQETAVTLAWS--KPTHSGENIISYELYWNDTYAKAKHHRRIGLVETYSLT 680
KP++L + + + W + TH N + +A K R T +
Sbjct: 106 KPKNLSCIVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYS 165
Query: 681 GLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQNVSC---EPLSSTSIRISW 737
+Y + +W+ A++ G+ T+ I V PP N+S E LSS ++++W
Sbjct: 166 TVYFVNIE-VWVEAENALGK-VTSDHINFDPVYKVKPNPPHNLSVINSEELSSI-LKLTW 222
Query: 738 EPPPVERSNGHIVYYKLQFVETGRSDSEASI---VTLKNQTSFVLDELKKWTEYRIWVLA 794
P ++ + I+ Y +Q+ T + + + I T ++SF + +LK +TEY +
Sbjct: 223 TNPSIK--SVIILKYNIQY-RTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRC 279
Query: 795 GTSIGDG 801
G G
Sbjct: 280 MKEDGKG 286
>pdb|2EE2|A Chain A, Solution Structures Of The Fn3 Domain Of Human Contactin 1
Length = 119
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 464 GEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQ 523
G ++ + + Q P AP +V V+ LSSS + + W+ + Y++ Y
Sbjct: 1 GSSGSSGVAVINSAQDAPSEAPTEVGVKVLSSSEISVHWEH--VLEKIVESYQIRYWAAH 58
Query: 524 SLPMSAWETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVGPGP 566
+A QV + +L P T Y I V A S G GP
Sbjct: 59 DKEEAANRVQVTSQEYSARLENLLPDTQYFIEVGACNSAGCGP 101
Score = 37.4 bits (85), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 53/112 (47%), Gaps = 13/112 (11%)
Query: 277 GRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWD---EPETPNGQIT--AKHHR 331
G S AVI + + P AP +V V+ LSSS + + W+ E + QI A H +
Sbjct: 1 GSSGSSGVAVINSAQDAPSEAPTEVGVKVLSSSEISVHWEHVLEKIVESYQIRYWAAHDK 60
Query: 332 -----RIGLV-ETYS--LTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQ 375
R+ + + YS L L P+T Y+I + A + G G + I TK+
Sbjct: 61 EEAANRVQVTSQEYSARLENLLPDTQYFIEVGACNSAGCGPPSDMIEAFTKK 112
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 13/88 (14%)
Query: 203 APLDVKISEVTATSVRLDWTYPSETLL------YYVIQYKPKAANTPYSEISGIITTYYT 256
AP +V + ++++ + + W + E ++ Y+ K +AAN + + Y+
Sbjct: 21 APTEVGVKVLSSSEISVHWEHVLEKIVESYQIRYWAAHDKEEAANRVQ-----VTSQEYS 75
Query: 257 VR--NLSPYTEYEFYIIAVNNLGRGPPS 282
R NL P T+Y + A N+ G GPPS
Sbjct: 76 ARLENLLPDTQYFIEVGACNSAGCGPPS 103
>pdb|1I1R|A Chain A, Crystal Structure Of A CytokineRECEPTOR COMPLEX
Length = 303
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 8/82 (9%)
Query: 205 LDVKISEVTATSVRLDWTYPS---ETLLYYVIQYKPKAANTPYSEI----SGIITTYYTV 257
L V SE ++ ++L WT PS +L Y IQY+ K A+T +S+I + + +TV
Sbjct: 206 LSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDAST-WSQIPPEDTASTRSSFTV 264
Query: 258 RNLSPYTEYEFYIIAVNNLGRG 279
++L P+TEY F I + G+G
Sbjct: 265 QDLKPFTEYVFRIRCMKEDGKG 286
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 80/187 (42%), Gaps = 14/187 (7%)
Query: 623 KPRDLRAVDIQETAVTLAWS--KPTHSGENIISYELYWNDTYAKAKHHRRIGLVETYSLT 680
KP++L + + + W + TH N + +A K R T +
Sbjct: 106 KPKNLSCIVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYS 165
Query: 681 GLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQNVSC---EPLSSTSIRISW 737
+Y + +W+ A++ G+ T+ I V PP N+S E LSS ++++W
Sbjct: 166 TVYFVNIE-VWVEAENALGK-VTSDHINFDPVYKVKPNPPHNLSVINSEELSSI-LKLTW 222
Query: 738 EPPPVERSNGHIVYYKLQFVETGRSDSEASI---VTLKNQTSFVLDELKKWTEYRIWVLA 794
P ++ + I+ Y +Q+ T + + + I T ++SF + +LK +TEY +
Sbjct: 223 TNPSIK--SVIILKYNIQY-RTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRC 279
Query: 795 GTSIGDG 801
G G
Sbjct: 280 MKEDGKG 286
>pdb|2DM4|A Chain A, Solution Structure Of The Second Fn3 Domain Of Human
SorlaLR11
Length = 108
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 6/97 (6%)
Query: 484 APRDVQVR-PLSSSTMVI-QWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLT 541
APR++Q+ P + +++ W P +G I Y V Y++ S W +Q +N T
Sbjct: 10 APRNLQLSLPREAEGVIVGHWAPPIHTHGLIREYIVEYSRSGS---KMWASQRAASN-FT 65
Query: 542 TISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQG 578
I +L +T+YT+RV A TS G G S + T +G
Sbjct: 66 EIKNLLVNTLYTVRVAAVTSRGIGNWSDSKSITTIKG 102
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 860 VTGLQPDTIYTIQVAALTRKGDGDRSKPETIKTPGG 895
+ L +T+YT++VAA+T +G G+ S ++I T G
Sbjct: 67 IKNLLVNTLYTVRVAAVTSRGIGNWSDSKSITTIKG 102
>pdb|1X5I|A Chain A, The Solution Structure Of The Fourth Fibronectin Type Iii
Domain Of Human Neogenin
Length = 126
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 48/100 (48%), Gaps = 7/100 (7%)
Query: 485 PRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQ-LTTI 543
P + VRPL +S +V+ W PE N + GY + Y + +T VD Q TI
Sbjct: 31 PSSLHVRPLVTS-IVVSWTPPENQNIVVRGYAIGY----GIGSPHAQTIKVDYKQRYYTI 85
Query: 544 SDLTPHTIYTIRVQAFTSVGPG-PLSAPVLVKTQQGVPSQ 582
+L P + Y I ++AF +VG G PL + + PS
Sbjct: 86 ENLDPSSHYVITLKAFNNVGEGIPLYESAVTRPHTSGPSS 125
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 254 YYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVIT 288
YYT+ NL P + Y + A NN+G G P + +T
Sbjct: 82 YYTIENLDPSSHYVITLKAFNNVGEGIPLYESAVT 116
>pdb|1TTF|A Chain A, The Three-Dimensional Structure Of The Tenth Type Iii
Module Of Fibronectin: An Insight Into Rgd-Mediated
Interactions
pdb|1TTG|A Chain A, The Three-Dimensional Structure Of The Tenth Type Iii
Module Of Fibronectin: An Insight Into Rgd-Mediated
Interactions
Length = 94
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 204 PLDVKISEVTATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEIS--GIITTYYTVRNLS 261
P D+++ T TS+ + W P+ T+ YY I Y N+P E + G +T T+ L
Sbjct: 5 PRDLEVVAATPTSLLISWDAPAVTVRYYRITYGETGGNSPVQEFTVPGSKST-ATISGLK 63
Query: 262 PYTEYEFYIIAVNNLGRGPPSS 283
P +Y + AV G P SS
Sbjct: 64 PGVDYTITVYAVTGRGDSPASS 85
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 720 PQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFVL 779
P+++ + TS+ ISW+ P V + YY++ + ETG + ++++ +
Sbjct: 5 PRDLEVVAATPTSLLISWDAPAVT-----VRYYRITYGETGGNSPVQEFTVPGSKSTATI 59
Query: 780 DELKKWTEYRIWVLAGTSIGDGP-SSYPITI 809
LK +Y I V A T GD P SS PI+I
Sbjct: 60 SGLKPGVDYTITVYAVTGRGDSPASSKPISI 90
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 485 PRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQ-DQSLPMSAWETQVVDNNQLTTI 543
PRD++V + ++++I WD P + Y++ Y + + P+ E V + TI
Sbjct: 5 PRDLEVVAATPTSLLISWDAPAV---TVRYYRITYGETGGNSPVQ--EFTVPGSKSTATI 59
Query: 544 SDLTPHTIYTIRVQAFTSVGPGPLSA 569
S L P YTI V A T G P S+
Sbjct: 60 SGLKPGVDYTITVYAVTGRGDSPASS 85
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 22/91 (24%)
Query: 298 PRDVQVRPLSSSTMVIQWDEPETPNGQITAKHHRRI----------------GLVETYSL 341
PRD++V + ++++I WD P +T +++R G T ++
Sbjct: 5 PRDLEVVAATPTSLLISWDAP-----AVTVRYYRITYGETGGNSPVQEFTVPGSKSTATI 59
Query: 342 TGLYPNTLYYIWLAAQSPRGEG-ATTPPIPV 371
+GL P Y I + A + RG+ A++ PI +
Sbjct: 60 SGLKPGVDYTITVYAVTGRGDSPASSKPISI 90
>pdb|1UEM|A Chain A, Solution Structure Of The First Fibronectin Type Iii
Domain Of Human Kiaa1568 Protein
Length = 117
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Query: 197 LLTLPVAPLDVKISEVTATSVRLDW------TYPSETLLYYVIQYKPKAANTPYSEISGI 250
L LP P ++++VT SV L W T P+ Y + + +N+ + + +
Sbjct: 12 LSDLPGPPSKPQVTDVTKNSVTLSWQPGTPGTLPASA--YIIEAFSQSVSNSWQTVANHV 69
Query: 251 ITTYYTVRNLSPYTEYEFYIIAVNNLGRGPPS 282
TT YTVR L P T Y F + A+N G PS
Sbjct: 70 KTTLYTVRGLRPNTIYLFMVRAINPQGLSDPS 101
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 11/119 (9%)
Query: 606 SGENIISYELYWNDTYAKPRDLRAVDIQETAVTLAWSKPT-----HSGENIISYELYWND 660
SG + +Y+L +D P + D+ + +VTL+W T S I ++ ++
Sbjct: 3 SGSSGKNYDL--SDLPGPPSKPQVTDVTKNSVTLSWQPGTPGTLPASAYIIEAFSQSVSN 60
Query: 661 TYAKAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTP-PIPVRTKQYVPGA 718
++ +H + L Y++ GL PNT+Y + A +P+G +P PVRT+ P +
Sbjct: 61 SWQTVANHVKTTL---YTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQDSGPSS 116
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 48/113 (42%), Gaps = 22/113 (19%)
Query: 279 GPPSSPAVITTGETE---------PGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITAKH 329
GPPS P V + PGT P +S +I+ N T +
Sbjct: 17 GPPSKPQVTDVTKNSVTLSWQPGTPGTLP---------ASAYIIEAFSQSVSNSWQTVAN 67
Query: 330 HRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTP-PIPVRTKQYGKTPG 381
H + L Y++ GL PNT+Y + A +P+G +P PVRT+ G + G
Sbjct: 68 HVKTTL---YTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQDSGPSSG 117
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 385 QAAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTP-PIPVRTKQYGKTPG 441
Q +H + L Y++ GL PNT+Y + A +P+G +P PVRT+ G + G
Sbjct: 63 QTVANHVKTTL---YTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQDSGPSSG 117
>pdb|1TDQ|A Chain A, Structural Basis For The Interactions Between Tenascins
And The C-Type Lectin Domains From Lecticans: Evidence
For A Cross-Linking Role For Tenascins
Length = 283
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 75/176 (42%), Gaps = 29/176 (16%)
Query: 203 APLDVKISEVTATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEI---SGII-TTYYTVR 258
AP ++++ TATS+ L+W Y + Y A Y E+ GI TT T+
Sbjct: 107 APKNLRVGSRTATSLDLEWDNSEAEAQEYKVVYSTLAGE-QYHEVLVPKGIGPTTKTTLT 165
Query: 259 NLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEP 318
+L P TEY I AV N + P++ T + +PRD+ V S +++ + W +
Sbjct: 166 DLVPGTEYGVGISAVMNSKQSIPATMNARTELD-----SPRDLMVTASSETSISLIWTKA 220
Query: 319 ETP--------------NGQITAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPR 360
P + ++T R +Y+LT L P Y I + A+ R
Sbjct: 221 SGPIDHYRITFTPSSGISSEVTVPRDR-----TSYTLTDLEPGAEYIISITAERGR 271
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 77/164 (46%), Gaps = 19/164 (11%)
Query: 445 QALYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDE 504
QAL P + Y + ++A RG + T + + AP++++V +++++ ++WD
Sbjct: 73 QALRPGSRYEVSISA--VRGTNESDASSTQFTTEID---APKNLRVGSRTATSLDLEWDN 127
Query: 505 PETPNGQITGYKVYYTQDQSLPMSAWETQVVDNN----QLTTISDLTPHTIYTIRVQAFT 560
E + YKV Y+ +L + +V TT++DL P T Y + + A
Sbjct: 128 SEAEAQE---YKVVYS---TLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISA-- 179
Query: 561 SVGPGPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLAWSKPT 604
V S P + + + S PRDL ET+++L W+K +
Sbjct: 180 -VMNSKQSIPATMNARTELDS-PRDLMVTASSETSISLIWTKAS 221
Score = 36.6 bits (83), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 76/175 (43%), Gaps = 33/175 (18%)
Query: 203 APLDVKISEVTATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEISGIITTY-------- 254
P + + +V+ T ++WT P + + +++Y G TT+
Sbjct: 17 GPTQILVRDVSDTVAFVEWTPPRAKVDFILLKYGLVGGE-------GGKTTFRLQPPLSQ 69
Query: 255 YTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQ 314
Y+V+ L P + YE I AV RG S A T TE AP++++V +++++ ++
Sbjct: 70 YSVQALRPGSRYEVSISAV----RGTNESDASSTQFTTEID-APKNLRVGSRTATSLDLE 124
Query: 315 WDEPETPNGQITA--------KHH-----RRIGLVETYSLTGLYPNTLYYIWLAA 356
WD E + ++H + IG +LT L P T Y + ++A
Sbjct: 125 WDNSEAEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISA 179
>pdb|1CFB|A Chain A, Crystal Structure Of Tandem Type Iii Fibronectin Domains
From Drosophila Neuroglian At 2.0 Angstroms
Length = 205
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 228 LLYYVIQYK----PKAANTPYSEISGIITTYYTVRNLSPYTEYEFYIIAVNNLGRGPPSS 283
+L+Y IQ+ P + + Y ++ +++ V +SP+ Y F +IA N +G PPS+
Sbjct: 35 ILHYTIQFNTSFTPASWDAAYEKVPNTDSSF--VVQMSPWANYTFRVIAFNKIGASPPSA 92
Query: 284 PA-VITTGETEPGTAPRDVQVRPLSSSTMVIQW 315
+ TT P P +V + + +VI W
Sbjct: 93 HSDSCTTQPDVPFKNPDNVVGQGTEPNNLVISW 125
>pdb|1UEN|A Chain A, Solution Structure Of The Third Fibronectin Iii Domain Of
Human Kiaa0343 Protein
Length = 125
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 715 VPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVET------GRSDSEASI 768
+P P NV ++ST + W+P P++ GH+ Y++ + +T R E I
Sbjct: 13 LPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKKI 72
Query: 769 VTLK-NQTSFVLDELKKWTEYRIWVLAGTSIGDGPSS 804
+T + ++T +L L+ ++ Y + V G+GP+S
Sbjct: 73 LTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPAS 109
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 12/108 (11%)
Query: 481 PGTAPRDVQVRPLSSSTMVIQWDEP--ETPNGQITGYKVYYTQDQSLPMSAWETQVVDNN 538
P AP +V+V ++S+ + WD ++ G + GY++YY + QS S + ++
Sbjct: 14 PMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQS--SSKRNRRHIEKK 71
Query: 539 QLT--------TISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQG 578
LT + L P + YT+ V+ G GP S + T +G
Sbjct: 72 ILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNTPEG 119
>pdb|3TEU|A Chain A, Crystal Structure Of Fibcon
Length = 98
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 13/86 (15%)
Query: 203 APLDVKISEVTATSVRLDWTYPSETLLYYVIQY-------KPKAANTPYSEISGIITTYY 255
AP D++++ VT TS+ + WT PS T+ Y I Y +PK P S S
Sbjct: 4 APTDLQVTNVTDTSITVSWTPPSATITGYRITYTPSNGPGEPKELTVPPSSTS------V 57
Query: 256 TVRNLSPYTEYEFYIIAVNNLGRGPP 281
T+ L+P EY + A+ + PP
Sbjct: 58 TITGLTPGVEYVVSVYALKDNQESPP 83
Score = 36.2 bits (82), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 484 APRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLTTI 543
AP D+QV ++ +++ + W P+ ITGY++ YT P E V ++ TI
Sbjct: 4 APTDLQVTNVTDTSITVSWTP---PSATITGYRITYTPSNG-PGEPKELTVPPSSTSVTI 59
Query: 544 SDLTPHTIYTIRVQAF 559
+ LTP Y + V A
Sbjct: 60 TGLTPGVEYVVSVYAL 75
>pdb|2GEE|A Chain A, Crystal Structure Of Human Type Iii Fibronectin
Extradomain B And Domain 8
Length = 203
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 72/176 (40%), Gaps = 21/176 (11%)
Query: 623 KPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRI------GLVET 676
+P DL VDI ++++ L W+ P +S II Y + T A I V
Sbjct: 25 QPTDLSFVDITDSSIGLRWT-PLNS-STIIGYRI----TVVAAGEGIPIFEDFVDSSVGY 78
Query: 677 YSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRIS 736
Y++TGL P Y I + GE P Q PP ++ + ++R++
Sbjct: 79 YTVTGLEPGIDYDISVYTVKNGGEST-----PTTLTQQTAVPPPTDLRFTNIGPDTMRVT 133
Query: 737 WEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFVLDELKKWTEYRIWV 792
W PPP +V Y V+ +E SI N + VL L TEY + V
Sbjct: 134 WAPPPSIDLTNFLVRYSP--VKNEEDVAELSISPSDN--AVVLTNLLPGTEYVVSV 185
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 7/117 (5%)
Query: 204 PLDVKISEVTATSVRLDWT-YPSETLLYYVIQYKPKAANTP-YSEISGIITTYYTVRNLS 261
P D+ ++T +S+ L WT S T++ Y I P + + YYTV L
Sbjct: 26 PTDLSFVDITDSSIGLRWTPLNSSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLE 85
Query: 262 PYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEP 318
P +Y+ + V N G S+P +T P P D++ + TM + W P
Sbjct: 86 PGIDYDISVYTVKNGGE---STPTTLTQQTAVP--PPTDLRFTNIGPDTMRVTWAPP 137
>pdb|2DTG|E Chain E, Insulin Receptor (Ir) Ectodomain In Complex With Fab's
Length = 897
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 6/100 (6%)
Query: 427 PPIPVRTKQYGKTPGFGEQALYPNTLYYIWLA-----AQSPRGEGATTPPIPVRTKQYEP 481
PP+ + PG+ + L P T Y I++ + R GA + I V+T P
Sbjct: 536 PPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNP 595
Query: 482 GTAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQ 521
+ P D SSS ++++W P PNG IT Y V++ +
Sbjct: 596 -SVPLDPISVSNSSSQIILKWKPPSDPNGNITHYLVFWER 634
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 45/110 (40%), Gaps = 9/110 (8%)
Query: 546 LTPHTIYTIRVQAFTSVGP-----GPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLAW 600
L P T Y I V+ + G S + V+T PS P D +V + + L W
Sbjct: 556 LKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKW 615
Query: 601 SKPTHSGENIISYELYWNDTYAKPRDLRAVDIQETAVTL---AWSKPTHS 647
P+ NI Y ++W + A+ +L +D + L WS P S
Sbjct: 616 KPPSDPNGNITHYLVFW-ERQAEDSELFELDYCLKGLKLPSRTWSPPFES 664
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 255 YTVRNLSPYTEYEFYIIAVNNLGR-----GPPSSPAVITTGETEPGTAPRDVQVRPLSSS 309
+ +R L P+T+Y ++ + G S + T T P + P D SSS
Sbjct: 551 WLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNP-SVPLDPISVSNSSS 609
Query: 310 TMVIQWDEPETPNGQIT 326
++++W P PNG IT
Sbjct: 610 QIILKWKPPSDPNGNIT 626
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 46 SSSTMVIQWDEPETPNGQITH 66
SSS ++++W P PNG ITH
Sbjct: 607 SSSQIILKWKPPSDPNGNITH 627
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 53/145 (36%), Gaps = 23/145 (15%)
Query: 257 VRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLS-----SSTM 311
+ L +T Y + A N S A + T P D+ V P++ ++ +
Sbjct: 751 ISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDI-VGPVTHEIFENNVV 809
Query: 312 VIQWDEPETPNGQITAKH--HRRIGLVETY--------------SLTGLYPNTLYYIWLA 355
+ W EP+ PNG I +RR G E + L GL P Y + +
Sbjct: 810 HLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCDTRKHFALERGCRLRGLSPGN-YSVRIR 868
Query: 356 AQSPRGEGATTPPIPVRTKQYGKTP 380
A S G G+ T P Y P
Sbjct: 869 ATSLAGNGSWTEPTYFYVTDYLDVP 893
>pdb|3LOH|E Chain E, Structure Of The Insulin Receptor Ectodomain, Including Ct
P
Length = 917
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 6/100 (6%)
Query: 427 PPIPVRTKQYGKTPGFGEQALYPNTLYYIWLA-----AQSPRGEGATTPPIPVRTKQYEP 481
PP+ + PG+ + L P T Y I++ + R GA + I V+T P
Sbjct: 536 PPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNP 595
Query: 482 GTAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQ 521
+ P D SSS ++++W P PNG IT Y V++ +
Sbjct: 596 -SVPLDPISVSNSSSQIILKWKPPSDPNGNITHYLVFWER 634
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 45/110 (40%), Gaps = 9/110 (8%)
Query: 546 LTPHTIYTIRVQAFTSVGP-----GPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLAW 600
L P T Y I V+ + G S + V+T PS P D +V + + L W
Sbjct: 556 LKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKW 615
Query: 601 SKPTHSGENIISYELYWNDTYAKPRDLRAVDIQETAVTL---AWSKPTHS 647
P+ NI Y ++W + A+ +L +D + L WS P S
Sbjct: 616 KPPSDPNGNITHYLVFW-ERQAEDSELFELDYCLKGLKLPSRTWSPPFES 664
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 255 YTVRNLSPYTEYEFYIIAVNNLGR-----GPPSSPAVITTGETEPGTAPRDVQVRPLSSS 309
+ +R L P+T+Y ++ + G S + T T P + P D SSS
Sbjct: 551 WLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNP-SVPLDPISVSNSSS 609
Query: 310 TMVIQWDEPETPNGQIT 326
++++W P PNG IT
Sbjct: 610 QIILKWKPPSDPNGNIT 626
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 46 SSSTMVIQWDEPETPNGQITH 66
SSS ++++W P PNG ITH
Sbjct: 607 SSSQIILKWKPPSDPNGNITH 627
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 53/145 (36%), Gaps = 23/145 (15%)
Query: 257 VRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLS-----SSTM 311
+ L +T Y + A N S A + T P D+ V P++ ++ +
Sbjct: 770 ISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDI-VGPVTHEIFENNVV 828
Query: 312 VIQWDEPETPNGQITAKH--HRRIGLVETY--------------SLTGLYPNTLYYIWLA 355
+ W EP+ PNG I +RR G E + L GL P Y + +
Sbjct: 829 HLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCDTRKHFALERGCRLRGLSPGN-YSVRIR 887
Query: 356 AQSPRGEGATTPPIPVRTKQYGKTP 380
A S G G+ T P Y P
Sbjct: 888 ATSLAGNGSWTEPTYFYVTDYLDVP 912
>pdb|1FNA|A Chain A, Crystal Structure Of The Tenth Type Iii Cell Adhesion
Module Of Human Fibronectin
Length = 91
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 206 DVKISEVTATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEIS--GIITTYYTVRNLSPY 263
D+++ T TS+ + W P+ T+ YY I Y N+P E + G +T T+ L P
Sbjct: 2 DLEVVAATPTSLLISWDAPAVTVRYYRITYGETGGNSPVQEFTVPGSKST-ATISGLKPG 60
Query: 264 TEYEFYIIAVNNLGRGPPSS 283
+Y + AV G P SS
Sbjct: 61 VDYTITVYAVTGRGDSPASS 80
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 731 TSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFVLDELKKWTEYRI 790
TS+ ISW+ P V + YY++ + ETG + ++++ + LK +Y I
Sbjct: 11 TSLLISWDAPAVT-----VRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTI 65
Query: 791 WVLAGTSIGDGP-SSYPITI 809
V A T GD P SS PI+I
Sbjct: 66 TVYAVTGRGDSPASSKPISI 85
Score = 32.7 bits (73), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 486 RDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQ-DQSLPMSAWETQVVDNNQLTTIS 544
RD++V + ++++I WD P + Y++ Y + + P+ E V + TIS
Sbjct: 1 RDLEVVAATPTSLLISWDAPAV---TVRYYRITYGETGGNSPVQ--EFTVPGSKSTATIS 55
Query: 545 DLTPHTIYTIRVQAFTSVGPGPLSA 569
L P YTI V A T G P S+
Sbjct: 56 GLKPGVDYTITVYAVTGRGDSPASS 80
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 80/196 (40%), Gaps = 11/196 (5%)
Query: 104 PPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQ-NIELTPDDKLPVGRNV--L 160
PP F I P +E + P+ L C G+P + W K + P K+ NV L
Sbjct: 5 PPYF-IEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASL 63
Query: 161 TLDRVTESE--NYTCIAASVLGVIETSTIVKV-QCKYAPLLTLPVAPLDVKISEVTATSV 217
+++V S+ YTC A + +G + +S ++ + + K P + + + A
Sbjct: 64 VINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFEC 123
Query: 218 RLDWTYPSETLLYYVIQYKPKAANTPYSEISGIITTYYTVRNLSPYTEYEFYIIAVNNLG 277
R++ + P + Y + AN S I + T + S +Y A N LG
Sbjct: 124 RINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYN--CSASNPLG 181
Query: 278 RGPPSSPAVITTGETE 293
SS A +T E E
Sbjct: 182 TA--SSSAKLTLSEHE 195
>pdb|4GO6|B Chain B, Crystal Structure Of Hcf-1 Self-Association Sequence 1
pdb|4GO6|D Chain D, Crystal Structure Of Hcf-1 Self-Association Sequence 1
Length = 232
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 44/113 (38%), Gaps = 8/113 (7%)
Query: 510 GQITGYKVYYTQ-----DQSLPMSAWETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVGP 564
G I G V T D ++P V D NQL +L P T Y RV + G
Sbjct: 13 GVIKGTNVXVTHYFLPPDDAVPSDDDLGTVPDYNQLKK-QELQPGTAYKFRVAGINACGR 71
Query: 565 GPLSAPVLVKTQQ-GVPSQPRDLRAVDIQETAVTLAWSKPTHSGENIISYELY 616
GP S KT G P P ++ + L W P+ + II Y +Y
Sbjct: 72 GPFSEISAFKTCLPGFPGAPCAIK-ISKSPDGAHLTWEPPSVTSGKIIEYSVY 123
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 258 RNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDE 317
+ L P T Y+F + +N GRGP S + T AP +++ S + W+
Sbjct: 51 QELQPGTAYKFRVAGINACGRGPFSEISAFKTCLPGFPGAPCAIKIS-KSPDGAHLTWEP 109
Query: 318 PETPNGQI 325
P +G+I
Sbjct: 110 PSVTSGKI 117
>pdb|2DBJ|A Chain A, Solution Structures Of The Fn3 Domain Of Human Proto-
Oncogene Tyrosine-Protein Kinase Mer Precursor
Length = 124
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 3/113 (2%)
Query: 464 GEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMV-IQWDEPETP--NGQITGYKVYYT 520
G ++ I T + P AP +V V SS V I+W +P T +G++ GY++ +
Sbjct: 1 GSSGSSGWILASTTEGAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHV 60
Query: 521 QDQSLPMSAWETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVGPGPLSAPVLV 573
+ +V N IS + T+R+ A T G GP S PV +
Sbjct: 61 WQSAGISKELLEEVGQNGSRARISVQVHNATCTVRIAAVTRGGVGPFSDPVKI 113
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 51/125 (40%), Gaps = 26/125 (20%)
Query: 699 GEGATTPPIPVRTKQYVPGAPPQNVSC-EPLSSTSIRISWEPPPVERSNGHIVYYKLQFV 757
G ++ I T + P P NV+ SS ++ I W PP ++ +G +V Y++ V
Sbjct: 1 GSSGSSGWILASTTEGAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHV 60
Query: 758 ------------ETGRSDSEASI-VTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDGPSS 804
E G++ S A I V + N T V + A T G GP S
Sbjct: 61 WQSAGISKELLEEVGQNGSRARISVQVHNATCTVR------------IAAVTRGGVGPFS 108
Query: 805 YPITI 809
P+ I
Sbjct: 109 DPVKI 113
>pdb|2DJS|A Chain A, Solution Structures Of The Fn3 Domain Of Human Ephrin
Type- B Receptor 1
Length = 108
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 497 TMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLTTISDLTPHTIYTIRV 556
++ + W +PE PNG I Y++ Y + + ++ + N I L P +Y ++V
Sbjct: 23 SITLSWPQPEQPNGIILDYEIRYYEKEHNEFNSSMARSQTNT--ARIDGLRPGMVYVVQV 80
Query: 557 QAFTSVGPGPLSAPVLVKT 575
+A T G G S + +T
Sbjct: 81 RARTVAGYGKFSGKMCFQT 99
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 116 EVMLDSPLNLSCVAVGSPMPFVKW-RKGQNIELTPDDKLPVGRNVLTLDRVT--ESENYT 172
E + S L SCVA G P P V+W R GQ L +++ V L ++ +S Y
Sbjct: 305 EADIGSDLRWSCVASGKPRPAVRWLRDGQ--PLASQNRIEVSGGELRFSKLVLEDSGMYQ 362
Query: 173 CIAASVLGVIETSTIVKVQ 191
C+A + G + S + VQ
Sbjct: 363 CVAENKHGTVYASAELTVQ 381
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 72 ARSHARLAAQSVLRRGRLAHAVRQVADPVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVG 131
A SH +SV + + A+ R+ P PA + + L C A G
Sbjct: 177 ATSHIDFITKSVFSK---FSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFG 233
Query: 132 SPMPFVKWRK 141
+P+P +KWRK
Sbjct: 234 NPVPQIKWRK 243
>pdb|3D1M|C Chain C, Crystal Structure Of Sonic Hedgehog Bound To The Third
Fniii Domain Of Cdo
pdb|3D1M|D Chain D, Crystal Structure Of Sonic Hedgehog Bound To The Third
Fniii Domain Of Cdo
pdb|3N1F|C Chain C, Crystal Structure Of Ihhn Bound To Cdofn3
pdb|3N1F|D Chain D, Crystal Structure Of Ihhn Bound To Cdofn3
pdb|3N1Q|C Chain C, Crystal Structure Of Dhhn Bound To Cdofn3
pdb|3N1Q|D Chain D, Crystal Structure Of Dhhn Bound To Cdofn3
pdb|3N1Q|F Chain F, Crystal Structure Of Dhhn Bound To Cdofn3
Length = 102
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
Query: 481 PGTAPRDVQVRPLSSSTMVIQWDEPETPNGQ--ITGYKVYYTQDQSLPMSAWETQVVD-N 537
P T P +S + ++++W + N I G+ +YY S S ++ VV+ +
Sbjct: 4 PITGPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVEGS 63
Query: 538 NQLTTISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQ 576
Q I L P T Y I++Q F G S ++ +T+
Sbjct: 64 KQWHMIGHLQPETSYDIKMQCFNEGGESEFSNVMICETK 102
>pdb|1QR4|A Chain A, Two Fibronectin Type-Iii Domain Segment From Chicken
Tenascin
pdb|1QR4|B Chain B, Two Fibronectin Type-Iii Domain Segment From Chicken
Tenascin
Length = 186
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 10/118 (8%)
Query: 624 PRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVET-YSLTGL 682
P+DL D ET ++L W +P + Y L + K K+ I + T + L GL
Sbjct: 10 PKDLEVSDPTETTLSLRWRRPVAKFDR---YRLTYVSPSGK-KNEMEIPVDSTSFILRGL 65
Query: 683 YPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPP 740
T Y I L A+ R + + P ++ V P+ +S ++ S +SW PP
Sbjct: 66 DAGTEYTISLVAEKGRHK---SKPTTIKGSTVV--GSPKGISFSDITENSATVSWTPP 118
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 52/117 (44%), Gaps = 6/117 (5%)
Query: 204 PLDVKISEVTATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEISGIITTYYTVRNLSPY 263
P D+++S+ T T++ L W P Y + Y + EI + +T + +R L
Sbjct: 10 PKDLEVSDPTETTLSLRWRRPVAKFDRYRLTYVSPSGKKNEMEIP-VDSTSFILRGLDAG 68
Query: 264 TEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEPET 320
TEY ++A + P++ G T G +P+ + ++ ++ + W P +
Sbjct: 69 TEYTISLVAEKGRHKSKPTT----IKGSTVVG-SPKGISFSDITENSATVSWTPPRS 120
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 31/81 (38%)
Query: 203 APLDVKISEVTATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEISGIITTYYTVRNLSP 262
+P + S++T S + WT P + Y + Y P TP T + L P
Sbjct: 97 SPKGISFSDITENSATVSWTPPRSRVDSYRVSYVPITGGTPNVVTVDGSKTRTKLVKLVP 156
Query: 263 YTEYEFYIIAVNNLGRGPPSS 283
+Y II+V P S
Sbjct: 157 GVDYNVNIISVKGFEESEPIS 177
>pdb|1WF5|A Chain A, Solution Structure Of The First Fn3 Domain Of Sidekick-2
Protein
Length = 121
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 209 ISEVTATSVRLDWTYPSET---LLYYVIQYKPKAANTPYSEISGII---TTYYTVRNLSP 262
+S V ++ L WT P + L+ Y+++ N P++ + + T TV+ L P
Sbjct: 28 LSTVERRAINLTWTKPFDGNSPLIRYILEMSEN--NAPWTVLLASVDPKATSVTVKGLVP 85
Query: 263 YTEYEFYIIAVNNLGRG 279
Y+F + AVN++G+G
Sbjct: 86 ARSYQFRLCAVNDVGKG 102
>pdb|2DOC|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of
Human Neural Cell Adhesion Molecule 2
Length = 119
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 4/97 (4%)
Query: 197 LLTLPVAPLDVKISEVTATSVRLDWTYPSET----LLYYVIQYKPKAANTPYSEISGIIT 252
L +P +P VKI E++ T+ ++ + P + +Y + K A+ S +
Sbjct: 14 LADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQ 73
Query: 253 TYYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITT 289
T + NL P T YE + AVN G+G S + T
Sbjct: 74 TMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQT 110
Score = 36.6 bits (83), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 606 SGENIISYELYWNDTYAKPRDLRAVDIQETAVTLAWSKP-THSGENIISYELYWNDTYAK 664
SG + Y L D + P ++ +++ +T ++++KP +H G I Y++ + ++
Sbjct: 3 SGSSGQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASE 62
Query: 665 A-KHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEG 701
K R G+ L L PNT Y I +AA + +G+G
Sbjct: 63 IWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQG 100
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 863 LQPDTIYTIQVAALTRKGDGDRSKPETIKT 892
L+P+T Y I+VAA+ KG GD SK E +T
Sbjct: 81 LEPNTTYEIRVAAVNGKGQGDYSKIEIFQT 110
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 18/84 (21%)
Query: 296 TAPRDVQVRPLSSSTMVIQWDEPETPNGQITAKHHRRIGLVETYS--------------- 340
++P V++ LS +T + +++P++ G HH ++ + E S
Sbjct: 19 SSPYGVKIIELSQTTAKVSFNKPDSHGG--VPIHHYQVDVKEVASEIWKIVRSHGVQTMV 76
Query: 341 -LTGLYPNTLYYIWLAAQSPRGEG 363
L L PNT Y I +AA + +G+G
Sbjct: 77 VLNNLEPNTTYEIRVAAVNGKGQG 100
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 483 TAPRDVQVRPLSSSTMVIQWDEPETPNGQ-ITGYKVYYTQDQSLPMSAWETQVVDNNQ-L 540
++P V++ LS +T + +++P++ G I Y+V + + W+ Q +
Sbjct: 19 SSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQV---DVKEVASEIWKIVRSHGVQTM 75
Query: 541 TTISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKT 575
+++L P+T Y IRV A G G S + +T
Sbjct: 76 VVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQT 110
>pdb|2W1N|A Chain A, Cohesin And Fibronectin Type-Iii Double Module Construct
From The Clostridium Perfringens Glycoside Hydrolase
Gh84c
Length = 238
Score = 37.4 bits (85), Expect = 0.042, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 7/90 (7%)
Query: 625 RDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVET-YSLTGLY 683
RD +A +I + VT+ W++P + E + Y L Y K IG ET Y+ L
Sbjct: 155 RDFKASEINKKNVTVTWTEP-ETTEGLEGYIL-----YKDGKKVAEIGKDETSYTFKKLN 208
Query: 684 PNTLYYIWLAAQSPRGEGATTPPIPVRTKQ 713
+T+Y +AA+ GE ++ + +RT +
Sbjct: 209 RHTIYNFKIAAKYSNGEVSSKESLTLRTAR 238
Score = 34.7 bits (78), Expect = 0.24, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 15/89 (16%)
Query: 482 GTAP-------RDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQV 534
GT+P RD + ++ + + W EPET G + GY +Y + + ET
Sbjct: 144 GTSPEIVVNPVRDFKASEINKKNVTVTWTEPETTEG-LEGYILYKDGKKVAEIGKDETSY 202
Query: 535 VDNNQLTTISDLTPHTIYTIRVQAFTSVG 563
T L HTIY ++ A S G
Sbjct: 203 -------TFKKLNRHTIYNFKIAAKYSNG 224
Score = 34.3 bits (77), Expect = 0.32, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 14/95 (14%)
Query: 295 GTAP-------RDVQVRPLSSSTMVIQWDEPETP---NGQITAKHHRR---IGLVET-YS 340
GT+P RD + ++ + + W EPET G I K ++ IG ET Y+
Sbjct: 144 GTSPEIVVNPVRDFKASEINKKNVTVTWTEPETTEGLEGYILYKDGKKVAEIGKDETSYT 203
Query: 341 LTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQ 375
L +T+Y +AA+ GE ++ + +RT +
Sbjct: 204 FKKLNRHTIYNFKIAAKYSNGEVSSKESLTLRTAR 238
Score = 33.1 bits (74), Expect = 0.71, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 11/94 (11%)
Query: 719 PPQNVSCEPLSSTSIRISW-EPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSF 777
P ++ ++ ++ ++W EP E G+I+Y + G+ +E K++TS+
Sbjct: 153 PVRDFKASEINKKNVTVTWTEPETTEGLEGYILY------KDGKKVAEIG----KDETSY 202
Query: 778 VLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRT 811
+L + T Y + A S G+ S +T+RT
Sbjct: 203 TFKKLNRHTIYNFKIAAKYSNGEVSSKESLTLRT 236
Score = 29.6 bits (65), Expect = 7.2, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 206 DVKISEVTATSVRLDWTYP--SETLLYYVIQYKPKAANTPYSEISGIITTYYTVRNLSPY 263
D K SE+ +V + WT P +E L Y++ K +EI G T YT + L+ +
Sbjct: 156 DFKASEINKKNVTVTWTEPETTEGLEGYILYKDGKKV----AEI-GKDETSYTFKKLNRH 210
Query: 264 TEYEFYIIA 272
T Y F I A
Sbjct: 211 TIYNFKIAA 219
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 36.6 bits (83), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 12/114 (10%)
Query: 85 RRGRLAHAVRQVADPVRRVPPQFSIPPPALLE---VMLDSPLNLSCVAVGSPMPFVKWRK 141
R+ + H V + + RV P + LE + + +SC A G+P P + W K
Sbjct: 647 RKTKKRHCVVRQLTVLERVAPTIT----GNLENQTTSIGESIEVSCTASGNPPPQIMWFK 702
Query: 142 GQNIELTPDDKLPV--GRNVLTLDRVTESEN--YTCIAASVLGVIETSTIVKVQ 191
N L D + + G LT+ RV + + YTC A SVLG + ++
Sbjct: 703 -DNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIE 755
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 36.2 bits (82), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 72 ARSHARLAAQSVLRRGRLAHAVRQVADPVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVG 131
A SH + +SV + + A+ R P PA ++ + L C A G
Sbjct: 176 ATSHMDFSTKSVFSK---FAQLNLAAEDTRLFAPSIKARFPAETYALVGQQVTLECFAFG 232
Query: 132 SPMPFVKWRK 141
+P+P +KWRK
Sbjct: 233 NPVPRIKWRK 242
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 116 EVMLDSPLNLSCVAVGSPMPFVKW-RKGQNIELTPDDKLPVGRNVLTLDRVT--ESENYT 172
E + S L C A G P P V+W R G+ L +++ V L +++ +S Y
Sbjct: 304 EADIGSNLRWGCAAAGKPRPTVRWLRNGE--PLASQNRVEVLAGDLRFSKLSLEDSGMYQ 361
Query: 173 CIAASVLGVIETSTIVKVQ 191
C+A + G I S + VQ
Sbjct: 362 CVAENKHGTIYASAELAVQ 380
>pdb|2X10|A Chain A, Crystal Structure Of The Complete Epha2 Ectodomain
Length = 545
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 74/178 (41%), Gaps = 28/178 (15%)
Query: 214 ATSVRLDWTYPS-----ETLLYYVI---------QYKPKAANTPYSEI-SGIITTYYTVR 258
V L WT P E ++Y V + P A+ YSE G+ T TV
Sbjct: 343 GAKVELRWTPPQDSGGREDIVYSVTCEQCWPESGECGPCEASVRYSEPPHGLTRTSVTVS 402
Query: 259 NLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEP 318
+L P+ Y F + A N + G +S + T + T P V++ S++++ + W P
Sbjct: 403 DLEPHXNYTFTVEARNGV-SGLVTSRSFRTASVSINQTEPPKVRLEGRSTTSLSVSWSIP 461
Query: 319 ETPNGQITAKH--HRRIGLVETY----------SLTGLYPNTLYYIWLAAQSPRGEGA 364
++ +R+ G +Y +L L P+T Y + + A + G+GA
Sbjct: 462 PPQQSRVWKYEVTYRKKGDSNSYNVRRTEGFSVTLDDLAPDTTYLVQVQALTQEGQGA 519
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 843 NDPMRFDVSDGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKT 892
D ++V + + L PDT Y +QV ALT++G G SK +T
Sbjct: 479 GDSNSYNVRRTEGFSVTLDDLAPDTTYLVQVQALTQEGQGAGSKVHEFQT 528
Score = 33.1 bits (74), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 720 PQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFVL 779
P V E S+TS+ +SW PP ++S +K + + DS + V S L
Sbjct: 441 PPKVRLEGRSTTSLSVSWSIPPPQQSR----VWKYEVTYRKKGDSNSYNVRRTEGFSVTL 496
Query: 780 DELKKWTEYRIWVLAGTSIGDGPSS 804
D+L T Y + V A T G G S
Sbjct: 497 DDLAPDTTYLVQVQALTQEGQGAGS 521
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Query: 542 TISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLAWS 601
T+SDL PH YT V+A V S + ++P +R T+++++WS
Sbjct: 400 TVSDLEPHXNYTFTVEARNGVSGLVTSRSFRTASVSINQTEPPKVRLEGRSTTSLSVSWS 459
Query: 602 KPTHSGENIISYELYWNDTYAKPRDLRAVDIQET 635
P + YE+ TY K D + +++ T
Sbjct: 460 IPPPQQSRVWKYEV----TYRKKGDSNSYNVRRT 489
Score = 32.7 bits (73), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 483 TAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLTT 542
T P V++ S++++ + W P ++ Y+V Y + +++ + + +T
Sbjct: 439 TEPPKVRLEGRSTTSLSVSWSIPPPQQSRVWKYEVTYRKKGD--SNSYNVRRTEGFSVT- 495
Query: 543 ISDLTPHTIYTIRVQAFTSVGPG 565
+ DL P T Y ++VQA T G G
Sbjct: 496 LDDLAPDTTYLVQVQALTQEGQG 518
>pdb|2X11|A Chain A, Crystal Structure Of The Complete Epha2 Ectodomain In
Complex With Ephrin A5 Receptor Binding Domain
Length = 545
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 74/175 (42%), Gaps = 28/175 (16%)
Query: 217 VRLDWTYPS-----ETLLYYVI---------QYKPKAANTPYSEI-SGIITTYYTVRNLS 261
V L WT P E ++Y V + P A+ YSE G+ T TV +L
Sbjct: 346 VELRWTPPQDSGGREDIVYSVTCEQCWPESGECGPCEASVRYSEPPHGLTRTSVTVSDLE 405
Query: 262 PYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEPETP 321
P+ Y F + A N + G +S + T + T P V++ S++++ + W P
Sbjct: 406 PHMNYTFTVEARNGV-SGLVTSRSFRTASVSINQTEPPKVRLEGRSTTSLSVSWSIPPPQ 464
Query: 322 NGQITAKH--HRRIGLVETY----------SLTGLYPNTLYYIWLAAQSPRGEGA 364
++ +R+ G +Y +L L P+T Y + + A + G+GA
Sbjct: 465 QSRVWKYEVTYRKKGDSNSYNVRRTEGFSVTLDDLAPDTTYLVQVQALTQEGQGA 519
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 843 NDPMRFDVSDGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKT 892
D ++V + + L PDT Y +QV ALT++G G SK +T
Sbjct: 479 GDSNSYNVRRTEGFSVTLDDLAPDTTYLVQVQALTQEGQGAGSKVHEFQT 528
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 720 PQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFVL 779
P V E S+TS+ +SW PP ++S +K + + DS + V S L
Sbjct: 441 PPKVRLEGRSTTSLSVSWSIPPPQQSR----VWKYEVTYRKKGDSNSYNVRRTEGFSVTL 496
Query: 780 DELKKWTEYRIWVLAGTSIGDGPSS 804
D+L T Y + V A T G G S
Sbjct: 497 DDLAPDTTYLVQVQALTQEGQGAGS 521
Score = 32.7 bits (73), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Query: 542 TISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLAWS 601
T+SDL PH YT V+A V S + ++P +R T+++++WS
Sbjct: 400 TVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTASVSINQTEPPKVRLEGRSTTSLSVSWS 459
Query: 602 KPTHSGENIISYELYWNDTYAKPRDLRAVDIQET 635
P + YE+ TY K D + +++ T
Sbjct: 460 IPPPQQSRVWKYEV----TYRKKGDSNSYNVRRT 489
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 483 TAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLTT 542
T P V++ S++++ + W P ++ Y+V Y + +++ + + +T
Sbjct: 439 TEPPKVRLEGRSTTSLSVSWSIPPPQQSRVWKYEVTYRKKGD--SNSYNVRRTEGFSVT- 495
Query: 543 ISDLTPHTIYTIRVQAFTSVGPG 565
+ DL P T Y ++VQA T G G
Sbjct: 496 LDDLAPDTTYLVQVQALTQEGQG 518
>pdb|3L5J|A Chain A, Crystal Structure Of Fniii Domains Of Human Gp130 (Domains
4
pdb|3L5J|B Chain B, Crystal Structure Of Fniii Domains Of Human Gp130 (Domains
4
Length = 288
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 95/230 (41%), Gaps = 35/230 (15%)
Query: 155 VGRNVLTLDRVTESENYTCIAASVLGVIETSTIVKVQCKYA---PLLTLPVAPLDVKISE 211
V LT++ + T +++G + + + C + P++ L P D
Sbjct: 60 VNATKLTVNLTNDRYLATLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKAFPKD----- 114
Query: 212 VTATSVRLDWTYPSETLLYYVIQYKPKAANTP----YSEISGIITTYYTVRNLSPYTEYE 267
+ ++WT P E++ Y++++ + P + + G + Y NL+ E +
Sbjct: 115 ---NMLWVEWTTPRESVKKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLA---ESK 168
Query: 268 FYIIAVNNLGRGPPSSPAVITT--GETEPGTAPRDVQVRPLSSSTMVIQWDE--PETPNG 323
Y+I V + P SP I + P P V+ + + + V++WD+ + NG
Sbjct: 169 CYLITVTPVYADGPGSPESIKAYLKQAPPSKGPT-VRTKKVGKNEAVLEWDQLPVDVQNG 227
Query: 324 QIT--AKHHRRIGLVET----------YSLTGLYPNTLYYIWLAAQSPRG 361
I +R I ET Y+L+ L +TLY + +AA + G
Sbjct: 228 FIRNYTIFYRTIIGNETAVNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEG 277
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
Query: 472 IPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDE--PETPNGQITGYKVYYTQDQSLPMSA 529
I KQ P P V+ + + + V++WD+ + NG I Y ++Y +++ +
Sbjct: 188 IKAYLKQAPPSKGPT-VRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFY---RTIIGNE 243
Query: 530 WETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVG 563
V ++ T+S LT T+Y +R+ A+T G
Sbjct: 244 TAVNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEG 277
>pdb|3N1G|C Chain C, Crystal Structure Of Dhhn Bound To Bocfn3
pdb|3N1G|D Chain D, Crystal Structure Of Dhhn Bound To Bocfn3
pdb|3N1M|C Chain C, Crystal Structure Of Ihhn Bound To Bocfn3
pdb|3N1P|C Chain C, Crystal Structure Of Ihhn Bound To Bocfn3
Length = 111
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 493 LSSSTMVIQWDEPETPNGQ--ITGYKVYYTQDQSLPMSAWETQVVDNNQL-TTISDLTPH 549
++ +T++++W N I G+ +YY S S ++ +V+ ++ +IS L P
Sbjct: 18 VNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDKYWHSISHLQPE 77
Query: 550 TIYTIRVQAFTSVGPGPLSAPVLVKTQ 576
T Y I++Q F G S ++ +T+
Sbjct: 78 TSYDIKMQCFNEGGESEFSNVMICETK 104
>pdb|3FL7|A Chain A, Crystal Structure Of The Human Ephrin A2 Ectodomain
Length = 536
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 74/175 (42%), Gaps = 28/175 (16%)
Query: 217 VRLDWTYPS-----ETLLYYVI---------QYKPKAANTPYSEI-SGIITTYYTVRNLS 261
V L WT P E ++Y V + P A+ YSE G+ T TV +L
Sbjct: 349 VELRWTPPQDSGGREDIVYSVTCEQCWPESGECGPCEASVRYSEPPHGLTRTSVTVSDLE 408
Query: 262 PYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEPETP 321
P+ Y F + A N + G +S + T + T P V++ S++++ + W P
Sbjct: 409 PHMNYTFTVEARNGVS-GLVTSRSFRTASVSINQTEPPKVRLEGRSTTSLSVSWSIPPPQ 467
Query: 322 NGQITAKH--HRRIGLVETY----------SLTGLYPNTLYYIWLAAQSPRGEGA 364
++ +R+ G +Y +L L P+T Y + + A + G+GA
Sbjct: 468 QSRVWKYEVTYRKKGDSNSYNVRRTEGFSVTLDDLAPDTTYLVQVQALTQEGQGA 522
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 843 NDPMRFDVSDGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKT 892
D ++V + + L PDT Y +QV ALT++G G SK +T
Sbjct: 482 GDSNSYNVRRTEGFSVTLDDLAPDTTYLVQVQALTQEGQGAGSKVHEFQT 531
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 720 PQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFVL 779
P V E S+TS+ +SW PP ++S +K + + DS + V S L
Sbjct: 444 PPKVRLEGRSTTSLSVSWSIPPPQQSR----VWKYEVTYRKKGDSNSYNVRRTEGFSVTL 499
Query: 780 DELKKWTEYRIWVLAGTSIGDGPSS 804
D+L T Y + V A T G G S
Sbjct: 500 DDLAPDTTYLVQVQALTQEGQGAGS 524
Score = 32.7 bits (73), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Query: 542 TISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLAWS 601
T+SDL PH YT V+A V S + ++P +R T+++++WS
Sbjct: 403 TVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTASVSINQTEPPKVRLEGRSTTSLSVSWS 462
Query: 602 KPTHSGENIISYELYWNDTYAKPRDLRAVDIQET 635
P + YE+ TY K D + +++ T
Sbjct: 463 IPPPQQSRVWKYEV----TYRKKGDSNSYNVRRT 492
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 483 TAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLTT 542
T P V++ S++++ + W P ++ Y+V Y + +++ + + +T
Sbjct: 442 TEPPKVRLEGRSTTSLSVSWSIPPPQQSRVWKYEVTYRKKGD--SNSYNVRRTEGFSVT- 498
Query: 543 ISDLTPHTIYTIRVQAFTSVGPG 565
+ DL P T Y ++VQA T G G
Sbjct: 499 LDDLAPDTTYLVQVQALTQEGQG 521
>pdb|1X5X|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of
Human Fibronectin Type Iii Domain Containing Protein 3
Length = 109
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 7/94 (7%)
Query: 200 LPVAPLDVKISEVTATSVRLDWTYPSET----LLYYVIQYKPKAANTPYSEISGIITTYY 255
+P +P+ +++ T + L W+ PS T + Y+++ + + + + Y
Sbjct: 10 MPASPV---LTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDLAY 66
Query: 256 TVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITT 289
TV+NL T+Y+F +IA N+ G+ PS TT
Sbjct: 67 TVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTT 100
>pdb|3B83|A Chain A, Tba
pdb|3B83|B Chain B, Tba
pdb|3B83|C Chain C, Tba
pdb|3B83|D Chain D, Tba
pdb|3B83|E Chain E, Tba
pdb|3B83|F Chain F, Tba
pdb|3B83|G Chain G, Tba
pdb|3B83|H Chain H, Tba
Length = 100
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Query: 204 PLDVKISEVTATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEISGIIT---TYYTVRNL 260
P ++K++ +T T+ + W P + ++ + K N P E + +T T T+ NL
Sbjct: 5 PFNIKVTNITLTTAVVTWQPPILPIEGILVTFGRK--NDPSDETTVDLTSSITSLTLTNL 62
Query: 261 SPYTEYEFYIIAVNNLGRGPPSSPAVITTGETE 293
P T YE I+A N PP S TTG E
Sbjct: 63 EPNTTYEIRIVARNGQQYSPPVS-TTFTTGSLE 94
>pdb|1WFO|A Chain A, The Eighth Fn3 Domain Of Human Sidekick-2
Length = 130
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 52/108 (48%), Gaps = 1/108 (0%)
Query: 470 PPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSA 529
PPI RT PG P + + ++++ + W P PNG I Y++ + + + +A
Sbjct: 17 PPILERTLDDVPG-PPMGILFPEVRTTSVRLIWQPPAAPNGIILAYQITHRLNTTTANTA 75
Query: 530 WETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQ 577
+ + + T + L P ++Y R+ A T G G + ++V T++
Sbjct: 76 TVEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVTTEK 123
Score = 33.5 bits (75), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 705 PPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKL 754
PPI RT VPG PP + + +TS+R+ W+PP NG I+ Y++
Sbjct: 17 PPILERTLDDVPG-PPMGILFPEVRTTSVRLIWQPPAA--PNGIILAYQI 63
Score = 33.1 bits (74), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
Query: 200 LPVAPLDVKISEVTATSVRLDW---TYPSETLLYYVIQYK--PKAANTPYSEISGIITTY 254
+P P+ + EV TSVRL W P+ +L Y I ++ ANT E+
Sbjct: 27 VPGPPMGILFPEVRTTSVRLIWQPPAAPNGIILAYQITHRLNTTTANTATVEVLAPSARQ 86
Query: 255 YTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITT 289
YT L P + Y F I A G G + V+TT
Sbjct: 87 YTATGLKPESVYLFRITAQTRKGWGEAAEALVVTT 121
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 855 ALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKT 892
A + TGL+P+++Y ++ A TRKG G+ ++ + T
Sbjct: 84 ARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVTT 121
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 11/103 (10%)
Query: 618 NDTYAKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVET- 676
+D P + +++ T+V L W P I++Y++ T+ VE
Sbjct: 25 DDVPGPPMGILFPEVRTTSVRLIWQPPAAPNGIILAYQI----THRLNTTTANTATVEVL 80
Query: 677 ------YSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQ 713
Y+ TGL P ++Y + AQ+ +G G + V T++
Sbjct: 81 APSARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVTTEK 123
>pdb|1X4Y|A Chain A, Solution Structure Of The 3rd Fibronectin Type Iii Domain
From Mouse Biregional Cell Adhesion
Molecule-RelatedDOWN- Regulated Oncogenes (Cdon) Binding
Protein
Length = 114
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 493 LSSSTMVIQWDEPETPNGQ--ITGYKVYYTQDQSLPMSAWETQVVDNNQL-TTISDLTPH 549
++ +T++++W N I G+ +YY S S ++ +V+ ++ +IS L P
Sbjct: 20 VNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDRYWHSISHLQPE 79
Query: 550 TIYTIRVQAFTSVGPGPLSAPVLVKTQ 576
T Y I++Q F G S ++ +T+
Sbjct: 80 TSYDIKMQCFNEGGESEFSNVMICETK 106
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Query: 109 IPPPALLEVMLDS---PLNLSCVAVGSPMPFVKWR-KGQNIELTPDDKLPVGRNVLTL-- 162
+ P+ + LDS + LSC G+P P ++W+ G ++++ D + V L +
Sbjct: 9 VQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLINN 68
Query: 163 -DRVTESENYTCIAASVLGVIETSTIVKVQCKY 194
++ ++ Y CIA + G I S K+Q Y
Sbjct: 69 PNKTQDAGTYQCIATNSFGTI-VSREAKLQFAY 100
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 115 LEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDD-KLPVGRNVLTLDRVTESENYTC 173
+ V ++ + C A G P P +W K + LT D ++ G +T+ ++++ Y C
Sbjct: 305 IHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQC 364
Query: 174 IAASVLGVIETSTIVKV 190
+A + GVI +S + V
Sbjct: 365 VAENKHGVIFSSAELSV 381
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/78 (19%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Query: 105 PQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRNVLTLDR 164
P+ + P + + + L C A+G+P+P + WR+ + + +L +
Sbjct: 205 PKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPN 264
Query: 165 VTESE--NYTCIAASVLG 180
+ + +Y C+A + G
Sbjct: 265 FQQEDAGSYECVAENSRG 282
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Query: 109 IPPPALLEVMLDS---PLNLSCVAVGSPMPFVKWR-KGQNIELTPDDKLPVGRNVLTL-- 162
+ P+ + LDS + LSC G+P P ++W+ G ++++ D + V L +
Sbjct: 8 VQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLINN 67
Query: 163 -DRVTESENYTCIAASVLGVIETSTIVKVQCKY 194
++ ++ Y CIA + G I S K+Q Y
Sbjct: 68 PNKTQDAGTYQCIATNSFGTI-VSREAKLQFAY 99
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 115 LEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDD-KLPVGRNVLTLDRVTESENYTC 173
+ V ++ + C A G P P +W K + LT D ++ G +T+ ++++ Y C
Sbjct: 304 IHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQC 363
Query: 174 IAASVLGVIETSTIVKV 190
+A + GVI +S + V
Sbjct: 364 VAENKHGVIFSSAELSV 380
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/78 (19%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Query: 105 PQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRNVLTLDR 164
P+ + P + + + L C A+G+P+P + WR+ + + +L +
Sbjct: 204 PKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPN 263
Query: 165 VTESE--NYTCIAASVLG 180
+ + +Y C+A + G
Sbjct: 264 FQQEDAGSYECVAENSRG 281
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 35.0 bits (79), Expect = 0.18, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 123 LNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPV--GRNVLTLDRVTESEN--YTCIAASV 178
+ +SC A G+P P + W K N L D + + G LT+ RV + + YTC A SV
Sbjct: 28 IEVSCTASGNPPPQIMWFK-DNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSV 86
Query: 179 LG 180
LG
Sbjct: 87 LG 88
>pdb|1X5A|A Chain A, The Solution Structure Of The Second Fibronectin Type Iii
Domain Of Mouse Ephrin Type-A Receptor 1
Length = 107
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 505 PETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVGP 564
P P G ++ QD+ W V++ L ++ L P T Y +RV+ T +GP
Sbjct: 35 PRNPGGNLSYELHVLNQDEE-----WHQMVLEPRVL--LTKLQPDTTYIVRVRTLTPLGP 87
Query: 565 GPLS 568
GP S
Sbjct: 88 GPFS 91
>pdb|1BPV|A Chain A, Titin Module A71 From Human Cardiac Muscle, Nmr, 50
Structures
Length = 112
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 212 VTATSVRLDWTYPSETLLYYVIQYKPKAANTP-----YSEISGIITTYYTVRNLSPYTEY 266
+T +V L W P T + + Y + + P + S I+ +TV L+ Y
Sbjct: 22 ITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEFTVSGLTEDAAY 81
Query: 267 EFYIIAVNNLGR-GPPSSPA 285
EF +IA N G PPS P+
Sbjct: 82 EFRVIAKNAAGAISPPSEPS 101
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 8/80 (10%)
Query: 117 VMLDSPLNLSCVAVGSPMPFVKW-RKGQNIELTPDDKLPVG--RNVLTLDRVTESEN--Y 171
V+ L L C+A G P P + W +KG ++ P DK L + V+E ++ Y
Sbjct: 234 VLRGMDLLLECIASGVPTPDIAWYKKGGDL---PSDKAKFENFNKALRITNVSEEDSGEY 290
Query: 172 TCIAASVLGVIETSTIVKVQ 191
C+A++ +G I + V+V+
Sbjct: 291 FCLASNKMGSIRHTISVRVK 310
>pdb|3L5I|A Chain A, Crystal Structure Of Fniii Domains Of Human Gp130 (Domains
4-6)
Length = 290
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 472 IPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDE--PETPNGQITGYKVYYTQDQSLPMSA 529
I KQ P P V+ + + + V++WD+ + NG I Y ++Y +++ +
Sbjct: 188 IKAYLKQAPPSKGPT-VRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFY---RTIIGNE 243
Query: 530 WETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVG 563
V ++ T+S LT T+Y +R A+T G
Sbjct: 244 TAVNVDSSHTEYTLSSLTSDTLYXVRXAAYTDEG 277
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 71/163 (43%), Gaps = 24/163 (14%)
Query: 219 LDWTYPSETLLYYVIQYKPKAANTP----YSEISGIITTYYTVRNLSPYTEYEFYIIAVN 274
++WT P E++ Y++++ + P + + G + Y NL+ E + Y+I V
Sbjct: 119 VEWTTPRESVKKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLA---ESKCYLITVT 175
Query: 275 NLGRGPPSSPAVITT--GETEPGTAPRDVQVRPLSSSTMVIQWDE--PETPNGQIT--AK 328
+ P SP I + P P V+ + + + V++WD+ + NG I
Sbjct: 176 PVYADGPGSPESIKAYLKQAPPSKGPT-VRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTI 234
Query: 329 HHRRIGLVET----------YSLTGLYPNTLYYIWLAAQSPRG 361
+R I ET Y+L+ L +TLY + AA + G
Sbjct: 235 FYRTIIGNETAVNVDSSHTEYTLSSLTSDTLYXVRXAAYTDEG 277
>pdb|1ZLG|A Chain A, Solution Structure Of The Extracellular Matrix Protein
Anosmin-1
Length = 680
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 14/130 (10%)
Query: 447 LYPNTLYYIWLAAQSPRG-EGATTPPIPVRTKQYEPGTAPRDVQVRPLSSS-------TM 498
+ P+ Y +AA + G G T P R+ + +P P +R +S+ T+
Sbjct: 230 IRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSK-DPSAPPAPANLRLANSTVNSDGSVTV 288
Query: 499 VIQWDEPETPNGQITGYKVYYT---QDQSL-PMSAWETQVVDNNQLTTI-SDLTPHTIYT 553
I WD PE P+ + YKV+++ +SL P + D Q + I L P Y
Sbjct: 289 TIVWDLPEEPDIPVHHYKVFWSWMVSSKSLVPTKKKRRKTTDGFQNSVILEKLQPDCDYV 348
Query: 554 IRVQAFTSVG 563
+ +QA T G
Sbjct: 349 VELQAITYWG 358
>pdb|2FNB|A Chain A, Nmr Structure Of The Fibronectin Ed-B Domain, Nmr, 20
Structures
Length = 95
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 206 DVKISEVTATSVRLDWT-YPSETLLYYVIQYKPKAANTP-YSEISGIITTYYTVRNLSPY 263
D+ ++T +S+ L WT S T++ Y I P + + YYTV L P
Sbjct: 11 DLSFVDITDSSIGLRWTPLNSSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPG 70
Query: 264 TEYEFYIIAVNNLGRGPPSS 283
+Y+ +I + N G P++
Sbjct: 71 IDYDISVITLINGGESAPTT 90
>pdb|2OCF|D Chain D, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Estradiol And The E2#23 Fn3 Monobody
Length = 121
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 204 PLDVKISEVTATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEIS--GIITTYYTVRNLS 261
P +++ T TS+ + W P+ T+ YY I Y N+P E + G +T T+ L
Sbjct: 32 PTKLEVVAATPTSLLISWDAPAVTVRYYRITYGETGGNSPVQEFTVPGSKST-ATISGLK 90
Query: 262 PYTEYEFYIIAVNNL 276
P +Y + AV L
Sbjct: 91 PGVDYTITVYAVTGL 105
>pdb|2E7H|A Chain A, Solution Structure Of The Second Fn3 Domain From Human
Ephrin Type-B Receptor 4
Length = 109
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Query: 487 DVQVRPLSSSTMVIQWDEPETPNGQITGYKV-YYTQDQSLPMSAWETQVVDNNQLTTISD 545
D++V S S++ + W P P+G + Y+V Y+ + P S + +N +
Sbjct: 13 DIRVTRSSPSSLSLAWAVPRAPSGAVLDYEVKYHEKGAEGPSSVRFLKTSENR--AELRG 70
Query: 546 LTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQ 576
L Y ++V+A + G GP +TQ
Sbjct: 71 LKRGASYLVQVRARSEAGYGPFGQEHHSQTQ 101
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
Query: 103 VPPQFSIPPPAL-LEVMLDSPLNLSCVAVGSPMPFVKW-RKGQNIELTPDDKLPVGRNVL 160
VPP S+P + + SC A GSP P + W R G+ IE L L
Sbjct: 191 VPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTEL 250
Query: 161 TLDRVTESEN--YTCIAASVLGVIETSTIVKV 190
T+ + S+ Y C A + G E ++V
Sbjct: 251 TVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 282
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 61/151 (40%), Gaps = 33/151 (21%)
Query: 72 ARSHARLAAQSVLR--RGRLAHAVRQVADPVRRVPPQFSIPPPAL----LEVMLDSPLNL 125
R+ RL ++ L +GRL + +P+ P+ PAL LE+M+ ++L
Sbjct: 188 CRTKHRLTGETRLSATKGRLV-----ITEPISSSAPR----TPALVQKPLELMVAHTISL 238
Query: 126 SCVAVGSPMPFVKWRK-------GQNIELTPDDKLPVGRNVLTLDRVTESENYTCIAASV 178
C A G P P +W K Q + L K G ++ V +S Y C+ +
Sbjct: 239 LCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNS 298
Query: 179 LGVIETSTIVKVQCKYAPLLTLPVAPLDVKI 209
+G T++ V APL KI
Sbjct: 299 VGGESVETVLTV-----------TAPLSAKI 318
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 68/167 (40%), Gaps = 36/167 (21%)
Query: 72 ARSHARLAAQSVLR--RGRLAHAVRQVADPVRRVPPQFSIPPPAL----LEVMLDSPLNL 125
R+ RL ++ L +GRL + +P+ P+ PAL LE+M+ ++L
Sbjct: 182 CRTKHRLTGETRLSATKGRLV-----ITEPISSSAPR----TPALVQKPLELMVAHTISL 232
Query: 126 SCVAVGSPMPFVKWRK-------GQNIELTPDDKLPVGRNVLTLDRVTESENYTCIAASV 178
C A G P P +W K Q + L K G ++ V +S Y C+ +
Sbjct: 233 LCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNS 292
Query: 179 LGVIETSTIVKVQCKYAPLLTLPVAPLDVKISEVTATSVRLDWTYPS 225
+G T++ V APL KI T T +D+ P+
Sbjct: 293 VGGESVETVLTV-----------TAPLSAKIDPPTQT---VDFGRPA 325
>pdb|2Q7N|A Chain A, Crystal Structure Of Leukemia Inhibitory Factor In Complex
With Lif Receptor (Domains 1-5)
pdb|2Q7N|C Chain C, Crystal Structure Of Leukemia Inhibitory Factor In Complex
With Lif Receptor (Domains 1-5)
Length = 488
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 12/111 (10%)
Query: 167 ESENYTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISEVTATSVRLDWTYPSE 226
E N+T + LG +++ ++ V + AP P +K+ ++ +T V W P
Sbjct: 358 EIHNFTLTGRNPLGQAQSAVVINVTERVAPH-----DPTSLKVKDINSTVVTFSWYLPGN 412
Query: 227 -TLLYYVIQYKPKAANTPYSEISGII-----TTYYT-VRNLSPYTEYEFYI 270
T + + Q + AN+ + I +TY+ V L+PYT Y F +
Sbjct: 413 FTKINLLCQIEICKANSKKEVRNATIRGAEDSTYHVAVDKLNPYTAYTFRV 463
>pdb|1WJ3|A Chain A, Solution Structure Of The Fourth Fn3 Domain Of Kiaa1496
Protein
Length = 117
Score = 33.5 bits (75), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 7/112 (6%)
Query: 699 GEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVE 758
G ++ + V TK+ P PP NV + T + ++WE + + YK+ +
Sbjct: 1 GSSGSSGTVNVTTKKTPPSQPPGNVVWNA-TDTKVLLNWEQVKAMENESEVTGYKVFY-- 57
Query: 759 TGRSDSEASIVTLK-NQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITI 809
R+ S+ ++ L N+TS L L +Y I V A T GDG SS I I
Sbjct: 58 --RTSSQNNVQVLNTNKTSAEL-VLPIKEDYIIEVKATTDGGDGTSSEQIRI 106
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 10/113 (8%)
Query: 464 GEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPET--PNGQITGYKVYY-T 520
G ++ + V TK+ P P +V V + + +++ W++ + ++TGYKV+Y T
Sbjct: 1 GSSGSSGTVNVTTKKTPPSQPPGNV-VWNATDTKVLLNWEQVKAMENESEVTGYKVFYRT 59
Query: 521 QDQSLPMSAWETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVGPGPLSAPVLV 573
Q+ QV++ N+ + L Y I V+A T G G S + +
Sbjct: 60 SSQN------NVQVLNTNKTSAELVLPIKEDYIIEVKATTDGGDGTSSEQIRI 106
>pdb|2EKJ|A Chain A, Solution Structures Of The Fn3 Domain Of Human Collagen
Alpha-1(Xx) Chain
Length = 105
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 206 DVKISEVTATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEISG-IITTYYTVRNLSPYT 264
++ ++ T S+++ WT P +L+Y + Y P + P +S ++ T+ +L T
Sbjct: 13 NLALASETPDSLQVSWTPPLGRVLHYWLTYAPASGLGPEKSVSVPGARSHVTLPDLQAAT 72
Query: 265 EYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAP 298
+Y + A+ GR S AV TG+T + P
Sbjct: 73 KYRVLVSAIYAAGR----SEAVSATGQTACPSGP 102
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 732 SIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFVLDELKKWTEYRIW 791
S+++SW PP G +++Y L + E S+ ++ L +L+ T+YR+
Sbjct: 23 SLQVSWTPP-----LGRVLHYWLTYAPASGLGPEKSVSVPGARSHVTLPDLQAATKYRVL 77
Query: 792 VLA 794
V A
Sbjct: 78 VSA 80
>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains
Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 218
Score = 33.5 bits (75), Expect = 0.62, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 112 PALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDK 152
P ++M S L L CVAVGSP+P +W K + + LT + K
Sbjct: 125 PTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNE-LPLTHETK 164
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homolog 2
Length = 100
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 112 PALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRNVLTLD----RVTE 167
PA + +D L C A G P+P + W K + D + TL R+++
Sbjct: 15 PANQTLAVDGTALLKCKATGDPLPVISWLK-EGFTFPGRDPRATIQEQGTLQIKNLRISD 73
Query: 168 SENYTCIAASVLGVIETSTIVKV 190
+ YTC+A S G S ++ V
Sbjct: 74 TGTYTCVATSSSGETSWSAVLDV 96
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 33.1 bits (74), Expect = 0.63, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
Query: 103 VPPQFSIPPPAL-LEVMLDSPLNLSCVAVGSPMPFVKW-RKGQNIELTPDDKLPVGRNVL 160
VPP S+P + + SC A GSP P + W R G+ IE L L
Sbjct: 95 VPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTEL 154
Query: 161 TLDRVTESEN--YTCIAASVLGVIETSTIVKV 190
T+ + S+ Y C A + G E ++V
Sbjct: 155 TVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 186
>pdb|1ZPU|A Chain A, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|B Chain B, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|C Chain C, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|D Chain D, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|E Chain E, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|F Chain F, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
Length = 534
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 45/225 (20%), Positives = 88/225 (39%), Gaps = 24/225 (10%)
Query: 116 EVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRNVLTLDRVTESENYTCIA 175
EV D+ L V VG + W + + + D + +NV + +T ++ YT +
Sbjct: 181 EVQPDTTYLLRIVNVGGFVSQYFWIEDHEMTVVEIDGITTEKNVTDMLYITVAQRYTVLV 240
Query: 176 ASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISEVTATSVRLDWTYPSETLL------ 229
+ +T + K+ + L V P D++++ + P++ +
Sbjct: 241 HT---KNDTDKNFAIMQKFDDTM-LDVIPSDLQLNATSYMVYNKTAALPTQNYVDSIDNF 296
Query: 230 ---YYVIQYKPKAANTPYSEISGIITTYYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAV 286
+Y+ Y+ +A Y E +IT + NL Y F+ NN+ P P +
Sbjct: 297 LDDFYLQPYEKEAI---YGEPDHVITVDVVMDNLKNGVNYAFF----NNITYTAPKVPTL 349
Query: 287 ITTGETEPGTAPRDVQVRPLSSSTMVIQWDE--PETPNGQITAKH 329
+T G + ++ ++ T +++ DE N Q T H
Sbjct: 350 MTV--LSSGDQANNSEIYGSNTHTFILEKDEIVEIVLNNQDTGTH 392
>pdb|3UYO|D Chain D, Crystal Structure Of Monobody Sh13ABL1 SH2 DOMAIN COMPLEX
Length = 95
Score = 33.1 bits (74), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 204 PLDVKISEVTATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEIS--GIITTYYTVRNLS 261
P +++ T TS+ + W P+ T+ +YVI Y N+P E + G +T T+ LS
Sbjct: 7 PTKLEVVAATPTSLLISWDAPAVTVDFYVITYGETGGNSPVQEFTVPGSKST-ATISGLS 65
Query: 262 PYTEYEFYIIA 272
P +Y + A
Sbjct: 66 PGVDYTITVYA 76
>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 117
Score = 33.1 bits (74), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 13/89 (14%)
Query: 104 PPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRK-GQNIELTPDD----KLPVGRN 158
PP+ + P+ L V P L+C A G P P ++W K G+ +E DD ++ +
Sbjct: 9 PPRI-VEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSG 67
Query: 159 VLTLDRVTESEN-------YTCIAASVLG 180
L R+ Y C+A + LG
Sbjct: 68 SLFFLRIVHGRKSRPDEGVYVCVARNYLG 96
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 5/87 (5%)
Query: 103 VPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPV--GRNVL 160
VPP F + P+ L + C G P+P V W K ++ + P D + G N+
Sbjct: 311 VPPWF-LNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDV-VIPSDYFQIVGGSNLR 368
Query: 161 TLDRVTESEN-YTCIAASVLGVIETST 186
L V E Y C+A + G ++S
Sbjct: 369 ILGVVKSDEGFYQCVAENEAGNAQSSA 395
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 4/94 (4%)
Query: 58 ETPNGQITHPPTRAARSHA--RLAAQSVLRRGRLAHAVRQVADPVRRVPPQFSIPPPALL 115
+ PNG + +R H Q G + + A + P +F ++
Sbjct: 73 QLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESIT 132
Query: 116 EVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTP 149
M D+ L L C +G PMP + W+K Q +L P
Sbjct: 133 AFMGDTVL-LKCEVIGDPMPTIHWQKNQQ-DLNP 164
>pdb|2DN7|A Chain A, Solution Structures Of The 6th Fn3 Domain Of Human
Receptor- Type Tyrosine-Protein Phosphatase F
Length = 107
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 488 VQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQ-DQSLPMSAWETQVVDNNQLTTISDL 546
+ + + +T ++QW P+ G++ GY++ Y + D++ P + ++Q T++ L
Sbjct: 13 MMISTTAMNTALLQWHPPKELPGELLGYRLQYCRADEARPNT---IDFGKDDQHFTVTGL 69
Query: 547 TPHTIYTIRVQAFTSVGPG 565
T Y R+ A G G
Sbjct: 70 HKGTTYIFRLAAKNRAGLG 88
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 13/89 (14%)
Query: 104 PPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRK-GQNIELTPDD----KLPVGRN 158
PP+ + P+ L V P L+C A G P P ++W K G+ +E DD ++ +
Sbjct: 9 PPRI-VEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSG 67
Query: 159 VLTLDRVTESEN-------YTCIAASVLG 180
L R+ Y C+A + LG
Sbjct: 68 SLFFLRIVHGRKSRPDEGVYVCVARNYLG 96
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 34/78 (43%), Gaps = 14/78 (17%)
Query: 125 LSCVAVGSPMPFVKWR-KGQNIELTPDDKLPVGRNVLTLDRVTESEN-----------YT 172
L CVA G+P P + W G+ I +D+ VG+ V V N Y
Sbjct: 449 LKCVAGGNPTPEISWELDGKKI--ANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYK 506
Query: 173 CIAASVLGVIETSTIVKV 190
CIA S +GV E S + V
Sbjct: 507 CIAKSKVGVAEHSAKLNV 524
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 13/90 (14%)
Query: 104 PPQFSIPPPALLE-----VMLDSPLNLSCVAVGSPMPFVKWRK------GQNIELTPDDK 152
P +PP +LE S + C A G P P V W+K G+ +L D
Sbjct: 708 PLNVYVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDN 767
Query: 153 LPVGRNVLTLDRVTESEN--YTCIAASVLG 180
+ V L +D + ++ Y C A + +G
Sbjct: 768 IRVEEGTLHVDNIQKTNEGYYLCEAINGIG 797
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 57/148 (38%), Gaps = 26/148 (17%)
Query: 72 ARSHARLAAQSVLR--RGRLAHAVRQVADPVRR-VPPQFSIPPPALLEVMLDSPLNLSCV 128
R+ RL ++ L +GRL + +P+ VP S+ + S + L C
Sbjct: 217 CRTKHRLTGETRLSATKGRLV-----ITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCP 271
Query: 129 AVGSPMPFVKWRK-------GQNIELTPDDKLPVGRNVLTLDRVTESENYTCIAASVLGV 181
A G P+P +W K Q + L K G ++ V +S Y C+ + +G
Sbjct: 272 AQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGG 331
Query: 182 IETSTIVKVQCKYAPLLTLPVAPLDVKI 209
T++ V APL KI
Sbjct: 332 ESVETVLTV-----------TAPLSAKI 348
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 59/148 (39%), Gaps = 26/148 (17%)
Query: 72 ARSHARLAAQSVLR--RGRLAHAVRQVADPVRRVPPQFS-IPPPALLEVMLDSPLNLSCV 128
R+ RL ++ L +GRL + +PV V P+ + ++V L S +L C+
Sbjct: 184 CRTKHRLTGETRLSATKGRLV-----ITEPVGSVRPKVNPQDKHQFIDVELASSYSLLCM 238
Query: 129 AVGSPMPFVKWRK-------GQNIELTPDDKLPVGRNVLTLDRVTESENYTCIAASVLGV 181
A P P +W K Q + L K G ++ V +S Y C+ + +G
Sbjct: 239 AQSYPTPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGG 298
Query: 182 IETSTIVKVQCKYAPLLTLPVAPLDVKI 209
T++ V APL KI
Sbjct: 299 ESVETVLTV-----------TAPLSAKI 315
>pdb|1X4X|A Chain A, Solution Structure Of The 6th Fibronectin Type Iii Domain
From Human Fibronectin Type Iii Domain Containing
Protein 3
Length = 106
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
Query: 489 QVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLTTISDLTP 548
QV S++ + W+ P + +T Y++ + + + + I L+P
Sbjct: 15 QVTCRSATCAQVNWEVPLSNGTDVTEYRLEWGGVEG----SMQICYCGPGLSYEIKGLSP 70
Query: 549 HTIYTIRVQAFTSVGPGPLSAPVLVKT 575
T Y RVQA + VG GP S V T
Sbjct: 71 ATTYYCRVQALSVVGAGPFSEVVACVT 97
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Query: 635 TAVTLAWSKPTHSGENIISYELYWNDTYAKAK-HHRRIGLVETYSLTGLYPNTLYYIWLA 693
T + W P +G ++ Y L W + + GL +Y + GL P T YY +
Sbjct: 22 TCAQVNWEVPLSNGTDVTEYRLEWGGVEGSMQICYCGPGL--SYEIKGLSPATTYYCRVQ 79
Query: 694 AQSPRGEG 701
A S G G
Sbjct: 80 ALSVVGAG 87
>pdb|2EDB|A Chain A, Solution Structure Of The Fourth Fibronectin Type Iii
Domain Of Human Netrin Receptor Dcc
Length = 116
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 485 PRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQ-LTTI 543
P + VRP ++ +++ W P PN + GY + Y + ET VD+ Q +I
Sbjct: 21 PSSLHVRP-QTNCIIMSWTPPLNPNIVVRGYIIGY----GVGSPYAETVRVDSKQRYYSI 75
Query: 544 SDLTPHTIYTIRVQAFTSVGPG 565
L + Y I ++AF + G G
Sbjct: 76 ERLESSSHYVISLKAFNNAGEG 97
>pdb|3BFO|A Chain A, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
pdb|3BFO|B Chain B, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
pdb|3BFO|C Chain C, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
pdb|3BFO|D Chain D, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
Length = 91
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 112 PALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQ 143
P ++M S L L CVAVGSP+P +W K +
Sbjct: 10 PTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNE 41
>pdb|2CUM|A Chain A, The Solution Structure Of The 33rd Fibronectin Type Iii
Domain Of Human Tenascin-X
Length = 105
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 13/71 (18%)
Query: 297 APRDVQVRPLSSSTMVIQWDEP-----------ETPNGQITAKHHRRIGLVETYSLTGLY 345
APRD++ + ++ T ++ W EP TP GQ + G + ++ L GL+
Sbjct: 10 APRDLEAKEVTPRTALLTWTEPPVRPAGYLLSFHTPGGQ--TQEILLPGGITSHQLLGLF 67
Query: 346 PNTLYYIWLAA 356
P+T Y L A
Sbjct: 68 PSTSYNARLQA 78
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Query: 203 APLDVKISEVTATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEISGIITTYYTVRNLSP 262
AP D++ EVT + L WT P Y++ + T + G IT++ + L P
Sbjct: 10 APRDLEAKEVTPRTALLTWTEPPVRPAGYLLSFHTPGGQTQEILLPGGITSHQLL-GLFP 68
Query: 263 YTEYEFYIIAVNNLGRGPPSSPAVITTG 290
T Y + A+ PP S + T G
Sbjct: 69 STSYNARLQAMWGQSLLPPVSTSFTTGG 96
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Query: 484 APRDVQVRPLSSSTMVIQWDEPET-PNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLTT 542
APRD++ + ++ T ++ W EP P G + + Q Q + + + ++QL
Sbjct: 10 APRDLEAKEVTPRTALLTWTEPPVRPAGYLLSFHTPGGQTQEILLPGG----ITSHQLL- 64
Query: 543 ISDLTPHTIYTIRVQAF 559
L P T Y R+QA
Sbjct: 65 --GLFPSTSYNARLQAM 79
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 209 ISEVTATSVRLDWTYPSETLLYYVIQY---KPKAANTPYSEISGIITTYYTVRNLSPYTE 265
I + +V L W P+ V Y K +A +S + TY T+ L +
Sbjct: 18 IENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSWSPCAKSRYTYTTIEGLRAGKQ 77
Query: 266 YEFYIIAVNNLGRGPPSSP 284
YEF IIA N G+ P P
Sbjct: 78 YEFRIIAENKHGQSKPCEP 96
>pdb|2CRZ|A Chain A, Solution Structure Of The Fifth Fniii Domain Of Human
Fibronectin Type Iii Domain Containing Protein 3a
Length = 110
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 8/89 (8%)
Query: 214 ATSVRLDWTYP----SETLLYYVIQYKPKAANTPYSEISGIITTYYTVRNLSPYTEYEFY 269
A ++L W P + Y ++ P + P G TV +L P Y F
Sbjct: 23 AKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQGS-EVECTVSSLLPGKTYSFR 81
Query: 270 IIAVNNLGRGPPSSPAVITTGETEPGTAP 298
+ A N +G GP S ITT PG+ P
Sbjct: 82 LRAANKMGFGPFSEKCDITTA---PGSGP 107
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
Query: 485 PRDVQVRPLSSSTMVIQWDEPETPNGQ-ITGYKVYYTQ-DQSLPMSAWETQVVDNNQLTT 542
P +Q RP + + ++W P G I+ Y V + ++ P ++ V+ T
Sbjct: 14 PPRLQGRP-KAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQGSEVE----CT 68
Query: 543 ISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQG 578
+S L P Y+ R++A +G GP S + T G
Sbjct: 69 VSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTAPG 104
>pdb|2RB8|A Chain A, High Resolution Design Of A Protein Loop
Length = 104
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 203 APLDVKISEVTATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEISGIIT---TYYTVRN 259
AP +++ +VT T+ + W PS+ + + + Y K + P + +T Y++ N
Sbjct: 5 APSQIEVKDVTDTTALITWMPPSQPVDGFELTYGIK--DVPGDRTTIDLTEDENQYSIGN 62
Query: 260 LSPYTEYEFYIIA 272
L P TEYE +I+
Sbjct: 63 LKPDTEYEVSLIS 75
>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2
pdb|1RHF|B Chain B, Crystal Structure Of Human Tyro3-D1d2
Length = 182
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 105 PQFSIPPPALLEVMLDSPLNLSCVAVGSPMPF-VKWRKGQNIELTPDDKLPVGRNVLTLD 163
P F++ P L V ++P LSC AVG P P + W +G P +VL +
Sbjct: 99 PFFTVEPKDL-AVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPS----PSVLNVT 153
Query: 164 RVTESENYTCIAASVLGVIETST 186
VT+S ++C A ++ G+ + T
Sbjct: 154 GVTQSTXFSCEAHNLKGLASSRT 176
>pdb|3QWQ|B Chain B, Crystal Structure Of The Extracellular Domain Of The
Epidermal Growth Factor Receptor In Complex With An
Adnectin
Length = 114
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 204 PLDVKISEVTATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEIS--GIITTYYTVRNLS 261
P D+++ T TS+ + W + YY I Y N+P E + G + T T+ L
Sbjct: 7 PRDLEVVAATPTSLLISWDSGRGSYQYYRITYGETGGNSPVQEFTVPGPVHT-ATISGLK 65
Query: 262 PYTEYEFYIIAVNN 275
P +Y + AV +
Sbjct: 66 PGVDYTITVYAVTD 79
>pdb|1GM8|B Chain B, Crystal Structures Of Penicillin Acylase Enzyme-Substrate
Complexes: Structural Insights Into The Catalytic
Mechanism
pdb|1GM7|B Chain B, Crystal Structures Of Penicillin Acylase Enzyme-Substrate
Complexes: Structural Insights Into The Catalytic
Mechanism
pdb|1GKF|B Chain B, Crystal Structures Of Penicillin Acylase Enzyme-Substrate
Complexes: Structural Insights Into The Catalytic
Mechanism
Length = 557
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Query: 110 PPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDD-----KLPVGRNVL 160
P A+L V L S L + VA PMPF KW E T D + VG +L
Sbjct: 342 PGSAILNVWLTSMLKRTVVAA-VPMPFDKWYSASGYETTQDGPTGSLNISVGAKIL 396
>pdb|1FXH|B Chain B, Mutant Of Penicillin Acylase Impaired In Catalysis With
Phenylacetic Acid In The Active Site
pdb|1FXV|B Chain B, Penicillin Acylase Mutant Impaired In Catalysis With
Penicillin G In The Active Site
Length = 557
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Query: 110 PPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDD-----KLPVGRNVL 160
P A+L V L S L + VA PMPF KW E T D + VG +L
Sbjct: 342 PGSAILNVWLTSMLKRTVVAA-VPMPFDKWYSASGYETTQDGPTGSLNISVGAKIL 396
>pdb|1AI4|B Chain B, Penicillin Acylase Complexed With
3,4-Dihydroxyphenylacetic Acid
pdb|1AI5|B Chain B, Penicillin Acylase Complexed With M-Nitrophenylacetic Acid
pdb|1AI6|B Chain B, Penicillin Acylase With P-Hydroxyphenylacetic Acid
pdb|1AI7|B Chain B, Penicillin Acylase Complexed With Phenol
pdb|1AJN|B Chain B, Penicillin Acylase Complexed With P-Nitrophenylacetic Acid
pdb|1AJP|B Chain B, Penicillin Acylase Complexed With
2,5-Dihydroxyphenylacetic Acid
pdb|1AJQ|B Chain B, Penicillin Acylase Complexed With Thiopheneacetic Acid
Length = 557
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Query: 110 PPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDD-----KLPVGRNVL 160
P A+L V L S L + VA PMPF KW E T D + VG +L
Sbjct: 342 PGSAILNVWLTSMLKRTVVAA-VPMPFDKWYSASGYETTQDGPTGSLNISVGAKIL 396
>pdb|1JX9|B Chain B, Penicillin Acylase, Mutant
pdb|1K5Q|B Chain B, Penicillin Acylase, Mutant Complexed With Paa
pdb|1K5S|B Chain B, Penicillin Acylase, Mutant Complexed With Ppa
Length = 557
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Query: 110 PPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDD-----KLPVGRNVL 160
P A+L V L S L + VA PMPF KW E T D + VG +L
Sbjct: 342 PGSAILNVWLTSMLKRTVVAA-VPMPFDKWYSASGYETTQDGPTGSLNISVGAKIL 396
>pdb|1KEC|B Chain B, Penicillin Acylase Mutant With Phenyl Proprionic Acid
Length = 557
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Query: 110 PPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDD-----KLPVGRNVL 160
P A+L V L S L + VA PMPF KW E T D + VG +L
Sbjct: 342 PGSAILNVWLTSMLKRTVVAA-VPMPFDKWYSASGYETTQDGPTGSLNISVGAKIL 396
>pdb|1PNK|B Chain B, Penicillin Acylase Has A Single-amino-acid Catalytic
Centre
pdb|1PNL|B Chain B, Penicillin Acylase Has A Single-amino-acid Catalytic
Centre
pdb|1PNM|B Chain B, Penicillin Acylase Has A Single-Amino-Acid Catalytic
Centre
pdb|1GM9|B Chain B, Crystal Structures Of Penicillin Acylase Enzyme-Substrate
Complexes: Structural Insights Into The Catalytic
Mechanism
pdb|1GK9|B Chain B, Crystal Structures Of Penicillin Acylase Enzyme-Substrate
Complexes: Structural Insights Into The Catalytic
Mechanism
pdb|1K7D|B Chain B, Penicillin Acylase With Phenyl Proprionic Acid
Length = 557
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Query: 110 PPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDD-----KLPVGRNVL 160
P A+L V L S L + VA PMPF KW E T D + VG +L
Sbjct: 342 PGSAILNVWLTSMLKRTVVAA-VPMPFDKWYSASGYETTQDGPTGSLNISVGAKIL 396
>pdb|1H2G|B Chain B, Altered Substrate Specificity Mutant Of Penicillin Acylase
Length = 557
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Query: 110 PPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDD-----KLPVGRNVL 160
P A+L V L S L + VA PMPF KW E T D + VG +L
Sbjct: 342 PGSAILNVWLTSMLKRTVVAA-VPMPFDKWYSASGYETTQDGPTGSLNISVGAKIL 396
>pdb|1E3A|B Chain B, A Slow Processing Precursor Penicillin Acylase From
Escherichia Coli
Length = 560
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Query: 110 PPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDD-----KLPVGRNVL 160
P A+L V L S L + VA PMPF KW E T D + VG +L
Sbjct: 345 PGSAILNVWLTSMLKRTVVAA-VPMPFDKWYSASGYETTQDGPTGSLNISVGAKIL 399
>pdb|3QWR|D Chain D, Crystal Structure Of Il-23 In Complex With An Adnectin
Length = 109
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 47/103 (45%), Gaps = 10/103 (9%)
Query: 720 PQNVSCEPLSSTSIRISWEPP-PVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFV 778
P+++ + TS+ ISWE P R YY++ + ETG + K+ +
Sbjct: 7 PRDLEVVAATPTSLLISWEHDYPYRR------YYRITYGETGGNSPVQEFTVPKDVDTAT 60
Query: 779 LDELKKWTEYRIWVLAGTSIGDGPSSY-PITI--RTHEDDPSE 818
+ LK +Y I V A TS Y PI+I RT D PS+
Sbjct: 61 ISGLKPGVDYTITVYAVTSSYKYDMQYSPISINYRTEIDKPSQ 103
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 30.4 bits (67), Expect = 4.6, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Query: 123 LNLSCVAVGSPMPFVKW-RKGQNIELTPDDKLPVGRNVLTLDRVTESEN--YTCIAASVL 179
+ SC A GSP P + W R G+ IE L LT+ + S+ Y C A +
Sbjct: 22 MTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKA 81
Query: 180 GVIETSTIVKV 190
G E ++V
Sbjct: 82 GEDEKQAFLQV 92
>pdb|2IBG|A Chain A, Crystal Structure Of Hedgehog Bound To The Fniii Domains
Of Ihog
pdb|2IBG|B Chain B, Crystal Structure Of Hedgehog Bound To The Fniii Domains
Of Ihog
pdb|2IBG|C Chain C, Crystal Structure Of Hedgehog Bound To The Fniii Domains
Of Ihog
pdb|2IBG|D Chain D, Crystal Structure Of Hedgehog Bound To The Fniii Domains
Of Ihog
Length = 214
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 59/150 (39%), Gaps = 36/150 (24%)
Query: 489 QVRPLSSSTMVIQWDEPETPNGQITGYKVYY----------TQDQSLPMSA--WETQVVD 536
V LS +++++W P I +KV Y T + ++P W +++
Sbjct: 9 NVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSEL-G 67
Query: 537 NNQLTTISDLTPHTIYTIRVQAFTS--------------VGPGPLSAPVLVKTQQGVPSQ 582
+ +++DL P Y R+ A S + PG P+ V
Sbjct: 68 KSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPV--------- 118
Query: 583 PRDLRAVDIQETAVTLAWSKPTHSGENIIS 612
P L + ETAV L WS + + E++I+
Sbjct: 119 PELLEIEEYSETAVVLHWSLASDADEHLIT 148
>pdb|2IBB|A Chain A, Crystal Structure Of The First And Second Fniii Domains Of
Ihog
Length = 213
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 59/150 (39%), Gaps = 36/150 (24%)
Query: 489 QVRPLSSSTMVIQWDEPETPNGQITGYKVYY----------TQDQSLPMSA--WETQVVD 536
V LS +++++W P I +KV Y T + ++P W +++
Sbjct: 9 NVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSEL-G 67
Query: 537 NNQLTTISDLTPHTIYTIRVQAFTS--------------VGPGPLSAPVLVKTQQGVPSQ 582
+ +++DL P Y R+ A S + PG P+ V
Sbjct: 68 KSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPV--------- 118
Query: 583 PRDLRAVDIQETAVTLAWSKPTHSGENIIS 612
P L + ETAV L WS + + E++I+
Sbjct: 119 PELLEIEEYSETAVVLHWSLASDADEHLIT 148
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 10/68 (14%)
Query: 123 LNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRNV------LTLDRVTESE--NYTCI 174
+ C + G+P P ++W K E PD ++ G V + +D V S+ NYTCI
Sbjct: 34 VKFKCPSSGTPQPTLRWLKNGK-EFKPDHRIG-GYKVRYATWSIIMDSVVPSDKGNYTCI 91
Query: 175 AASVLGVI 182
+ G I
Sbjct: 92 VENEYGSI 99
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 10/68 (14%)
Query: 123 LNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRNV------LTLDRVTESE--NYTCI 174
+ C + G+P P ++W K E PD ++ G V + +D V S+ NYTCI
Sbjct: 35 VKFKCPSSGTPQPTLRWLKNGK-EFKPDHRIG-GYKVRYATWSIIMDSVVPSDKGNYTCI 92
Query: 175 AASVLGVI 182
+ G I
Sbjct: 93 VENEYGSI 100
>pdb|2EDD|A Chain A, Solution Structure Of The Fifth Fibronectin Type Iii
Domain Of Human Netrin Receptor Dcc
Length = 123
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 624 PRDLRAVDIQETAVTLAWSKPT----HSGENIISYELYWNDTY-AKAKHHRRIGLVETYS 678
P ++AV + AV ++W+ + + Y + W ++ A AK+ +Y+
Sbjct: 22 PVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTSFSASAKYKSEDTTSLSYT 81
Query: 679 LTGLYPNTLY 688
TGL PNT+Y
Sbjct: 82 ATGLKPNTMY 91
>pdb|3E0G|A Chain A, Structure Of The Leukemia Inhibitory Factor Receptor
(Lif-R) Domains D1-D5
Length = 483
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 12/122 (9%)
Query: 445 QALYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDE 504
Q L +Y L A +P G +T + + K Y P T P +V+ ++S+ + + W
Sbjct: 347 QMLPNQEIYNFTLNAHNPLGRSQSTILVNITEKVY-PHT-PTSFKVKDINSTAVKLSWHL 404
Query: 505 PETPNGQITGYKVYYTQDQSLPMSAWE-----TQVVDNNQ-LTTISDLTPHTIYTIRVQA 558
P G + S E Q V+N+ L + L P+T+YT R++
Sbjct: 405 P----GNFAKINFLCEIEIKKSNSVQEQRNVTIQGVENSSYLVALDKLNPYTLYTFRIRC 460
Query: 559 FT 560
T
Sbjct: 461 ST 462
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 125 LSCVAVGSPMPFVKWRKGQ-NIELT-PDDKLPVGRNVLTLDRVTESENYTCIAASVLG 180
++C A+G+P P + W K Q ++++ P L G + R + Y C+A + +G
Sbjct: 132 MTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECVAENSMG 189
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 125 LSCVAVGSPMPFVKWRKGQ-NIELT-PDDKLPVGRNVLTLDRVTESENYTCIAASVLG 180
++C A+G+P P + W K Q ++++ P L G + R + Y C+A + +G
Sbjct: 130 MTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECVAENSMG 187
>pdb|2CRM|A Chain A, Solution Structure Of The Forth Fniii Domain Of Human
Length = 120
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Query: 493 LSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLTTISDLTPHTIY 552
+ S + I WD P+ NG T K + + WE + L P Y
Sbjct: 30 IHSHSFKITWDPPKD-NGGATINKYVVEMAEGSNGNKWEMIYSGATREHLCDRLNPGCFY 88
Query: 553 TIRVQAFTSVGPGPLSAPVLVKT 575
+RV + G +S +LV+T
Sbjct: 89 RLRVYCISDGGQSAVSESLLVQT 111
>pdb|3S97|C Chain C, Ptprz Cntn1 Complex
pdb|3S97|D Chain D, Ptprz Cntn1 Complex
Length = 201
Score = 29.3 bits (64), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 118 MLDSPLNLSCVAVGSPMPFVKWRK 141
++ + L C A+G+P+P ++WRK
Sbjct: 126 LMGQNVTLECFALGNPVPDIRWRK 149
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.132 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,865,577
Number of Sequences: 62578
Number of extensions: 1323838
Number of successful extensions: 3816
Number of sequences better than 100.0: 177
Number of HSP's better than 100.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 102
Number of HSP's that attempted gapping in prelim test: 3010
Number of HSP's gapped (non-prelim): 737
length of query: 904
length of database: 14,973,337
effective HSP length: 108
effective length of query: 796
effective length of database: 8,214,913
effective search space: 6539070748
effective search space used: 6539070748
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.2 bits)