Query psy8771
Match_columns 904
No_of_seqs 408 out of 3902
Neff 10.9
Searched_HMMs 46136
Date Fri Aug 16 18:50:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8771.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8771hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4221|consensus 100.0 2.2E-61 4.8E-66 522.3 70.5 818 2-895 115-1021(1381)
2 KOG4221|consensus 100.0 2.5E-56 5.4E-61 483.3 61.2 746 2-814 207-1021(1381)
3 KOG3513|consensus 100.0 2.3E-54 5E-59 472.9 70.5 739 2-891 207-1013(1051)
4 KOG3513|consensus 100.0 1.7E-50 3.6E-55 442.7 60.8 662 2-810 308-1013(1051)
5 KOG4222|consensus 100.0 7.7E-34 1.7E-38 307.5 38.1 730 20-811 30-843 (1281)
6 KOG4222|consensus 100.0 2.8E-30 6E-35 280.1 41.2 730 102-892 29-843 (1281)
7 KOG0196|consensus 99.7 1.2E-15 2.7E-20 161.5 22.4 192 480-714 330-537 (996)
8 KOG0196|consensus 99.7 4E-15 8.6E-20 157.7 20.8 189 620-814 331-537 (996)
9 cd05762 Ig8_MLCK Eighth immuno 99.6 7.4E-15 1.6E-19 122.1 11.7 91 105-204 1-97 (98)
10 cd05851 Ig3_Contactin-1 Third 99.6 6.9E-15 1.5E-19 119.8 11.2 86 104-191 1-88 (88)
11 KOG4258|consensus 99.6 9.4E-14 2E-18 147.9 18.8 317 486-809 492-920 (1025)
12 KOG4194|consensus 99.6 1.5E-13 3.2E-18 141.1 19.0 170 101-278 609-786 (873)
13 cd04968 Ig3_Contactin_like Thi 99.5 6.6E-13 1.4E-17 108.9 11.2 86 104-191 1-88 (88)
14 cd05728 Ig4_Contactin-2-like F 99.5 5.1E-13 1.1E-17 108.3 10.1 82 107-190 2-85 (85)
15 cd05852 Ig5_Contactin-1 Fifth 99.4 3.9E-13 8.5E-18 104.5 8.4 70 120-190 1-73 (73)
16 cd05739 Ig3_RPTP_IIa_LAR_like 99.4 5.5E-13 1.2E-17 102.4 9.1 68 120-188 1-68 (69)
17 cd05747 Ig5_Titin_like M5, fif 99.4 1.5E-12 3.2E-17 107.7 10.8 84 103-188 2-91 (92)
18 cd05745 Ig3_Peroxidasin Third 99.4 1.4E-12 3E-17 102.7 8.9 71 119-190 1-74 (74)
19 cd05749 Ig2_Tyro3_like Second 99.4 2.3E-12 4.9E-17 101.9 9.1 74 107-184 1-75 (81)
20 cd05735 Ig8_DSCAM Eight immuno 99.4 4.3E-12 9.4E-17 103.2 10.6 77 120-204 1-88 (88)
21 cd05893 Ig_Palladin_C C-termin 99.4 2.3E-12 4.9E-17 100.7 8.4 67 123-190 1-75 (75)
22 cd05894 Ig_C5_MyBP-C C5 immuno 99.4 5.5E-12 1.2E-16 102.0 10.5 76 114-190 4-86 (86)
23 cd05892 Ig_Myotilin_C C-termin 99.4 4E-12 8.7E-17 99.1 8.7 67 123-190 1-75 (75)
24 cd05867 Ig4_L1-CAM_like Fourth 99.3 5.2E-12 1.1E-16 100.0 9.4 70 120-190 1-75 (76)
25 cd05870 Ig5_NCAM-2 Fifth immun 99.3 8.7E-12 1.9E-16 104.4 10.8 86 103-190 1-98 (98)
26 cd04972 Ig_TrkABC_d4 Fourth do 99.3 1E-11 2.2E-16 102.1 10.9 81 108-190 4-90 (90)
27 cd05723 Ig4_Neogenin Fourth im 99.3 6.3E-12 1.4E-16 97.8 9.1 68 122-190 1-71 (71)
28 cd05868 Ig4_NrCAM Fourth immun 99.3 7E-12 1.5E-16 98.9 9.3 70 120-190 1-75 (76)
29 cd05737 Ig_Myomesin_like_C C-t 99.3 9.7E-12 2.1E-16 102.7 10.3 75 115-190 11-92 (92)
30 cd05869 Ig5_NCAM-1 Fifth immun 99.3 1.3E-11 2.8E-16 103.1 10.7 85 104-190 2-97 (97)
31 cd05849 Ig1_Contactin-1 First 99.3 1.2E-11 2.6E-16 101.6 10.2 83 104-188 1-91 (93)
32 cd05730 Ig3_NCAM-1_like Third 99.3 1.6E-11 3.4E-16 102.5 11.0 86 104-191 1-93 (95)
33 PF07679 I-set: Immunoglobulin 99.3 1.1E-11 2.4E-16 102.7 9.6 84 105-190 1-90 (90)
34 cd04975 Ig4_SCFR_like Fourth i 99.3 2.6E-11 5.6E-16 100.7 11.7 76 115-191 13-100 (101)
35 cd05865 Ig1_NCAM-1 First immun 99.3 2.7E-11 5.9E-16 99.8 11.2 81 109-190 5-95 (96)
36 PHA02785 IL-beta-binding prote 99.3 5.8E-10 1.3E-14 115.8 23.1 219 46-277 57-316 (326)
37 cd05848 Ig1_Contactin-5 First 99.3 2.6E-11 5.7E-16 100.1 10.2 78 105-184 2-87 (94)
38 cd05876 Ig3_L1-CAM Third immun 99.3 1.8E-11 3.9E-16 95.2 8.6 67 123-190 1-70 (71)
39 cd05850 Ig1_Contactin-2 First 99.3 3.9E-11 8.5E-16 99.1 10.9 82 105-188 2-92 (94)
40 cd04969 Ig5_Contactin_like Fif 99.3 2.2E-11 4.9E-16 95.5 8.9 70 120-190 1-73 (73)
41 cd05773 Ig8_hNephrin_like Eigh 99.3 3.9E-11 8.4E-16 102.1 10.9 89 102-191 2-105 (109)
42 cd05866 Ig1_NCAM-2 First immun 99.3 4E-11 8.6E-16 97.6 10.1 80 109-190 5-91 (92)
43 cd05863 Ig2_VEGFR-3 Second imm 99.3 3.1E-11 6.7E-16 91.1 8.5 64 123-191 1-66 (67)
44 cd07693 Ig1_Robo First immunog 99.3 4.9E-11 1.1E-15 101.3 10.7 85 104-190 1-99 (100)
45 cd04976 Ig2_VEGFR Second immun 99.2 3.5E-11 7.5E-16 93.3 8.9 68 123-191 1-70 (71)
46 cd05859 Ig4_PDGFR-alpha Fourth 99.2 7.5E-11 1.6E-15 98.2 11.4 76 115-191 13-100 (101)
47 cd05744 Ig_Myotilin_C_like Imm 99.2 3.2E-11 7E-16 94.7 8.7 67 123-190 1-75 (75)
48 cd04973 Ig1_FGFR First immunog 99.2 4.8E-11 1E-15 95.1 9.8 74 115-190 4-79 (79)
49 cd04978 Ig4_L1-NrCAM_like Four 99.2 3.4E-11 7.4E-16 95.8 9.0 70 120-190 1-75 (76)
50 cd05746 Ig4_Peroxidasin Fourth 99.2 2.7E-11 5.9E-16 93.6 7.5 65 123-188 1-68 (69)
51 cd05732 Ig5_NCAM-1_like Fifth 99.2 6.5E-11 1.4E-15 99.2 10.4 84 104-190 2-96 (96)
52 KOG4258|consensus 99.2 3.9E-10 8.5E-15 120.9 18.6 360 206-575 493-922 (1025)
53 cd05740 Ig_CEACAM_D4 Fourth im 99.2 8.4E-11 1.8E-15 96.1 10.4 73 115-190 13-90 (91)
54 cd05725 Ig3_Robo Third immunog 99.2 4.8E-11 1.1E-15 92.5 8.6 67 123-190 1-69 (69)
55 cd05854 Ig6_Contactin-2 Sixth 99.2 8.7E-11 1.9E-15 94.7 10.3 70 121-191 1-82 (85)
56 cd05864 Ig2_VEGFR-2 Second imm 99.2 6.1E-11 1.3E-15 90.9 8.4 67 123-191 1-69 (70)
57 cd05748 Ig_Titin_like Immunogl 99.2 7.9E-11 1.7E-15 92.9 9.2 68 122-190 1-74 (74)
58 cd05857 Ig2_FGFR Second immuno 99.2 8.8E-11 1.9E-15 95.8 9.5 75 115-190 4-85 (85)
59 cd05853 Ig6_Contactin-4 Sixth 99.2 1.3E-10 2.7E-15 92.3 9.7 70 121-191 1-82 (85)
60 cd05743 Ig_Perlecan_D2_like Im 99.2 8.9E-11 1.9E-15 93.4 8.8 70 120-190 1-76 (78)
61 cd05764 Ig_2 Subgroup of the i 99.2 1.2E-10 2.6E-15 91.8 9.4 71 120-190 1-74 (74)
62 cd05891 Ig_M-protein_C C-termi 99.2 1.6E-10 3.5E-15 95.0 10.1 75 115-190 11-92 (92)
63 cd05722 Ig1_Neogenin First imm 99.2 1.9E-10 4.1E-15 95.8 10.5 81 107-189 2-94 (95)
64 cd05763 Ig_1 Subgroup of the i 99.2 1.7E-10 3.6E-15 91.2 9.3 68 123-190 1-74 (75)
65 cd05758 Ig5_KIRREL3-like Fifth 99.2 2.3E-10 4.9E-15 95.8 10.3 82 104-188 2-97 (98)
66 cd05726 Ig4_Robo Fhird immunog 99.2 2E-10 4.4E-15 94.4 9.7 72 120-191 1-82 (90)
67 cd05760 Ig2_PTK7 Second immuno 99.2 1.8E-10 3.8E-15 91.2 8.7 68 123-191 1-73 (77)
68 cd05738 Ig2_RPTP_IIa_LAR_like 99.1 1.6E-10 3.5E-15 90.7 8.1 67 123-190 1-73 (74)
69 cd05855 Ig_TrkB_d5 Fifth domai 99.1 1.7E-10 3.8E-15 90.0 7.8 65 124-189 2-77 (79)
70 cd05731 Ig3_L1-CAM_like Third 99.1 1.8E-10 3.8E-15 90.3 8.0 67 123-190 1-70 (71)
71 cd05724 Ig2_Robo Second immuno 99.1 4.5E-10 9.7E-15 91.9 10.8 77 111-189 3-85 (86)
72 cd04974 Ig3_FGFR Third immunog 99.1 1.7E-10 3.7E-15 94.6 8.2 72 120-191 1-90 (90)
73 cd07702 Ig2_VEGFR-1 Second imm 99.1 3.6E-10 7.9E-15 86.6 8.5 62 123-185 1-65 (72)
74 cd04970 Ig6_Contactin_like Six 99.1 4.2E-10 9.1E-15 91.4 9.4 70 121-191 1-82 (85)
75 cd05756 Ig1_IL1R_like First im 99.1 2.9E-10 6.4E-15 93.3 8.4 75 115-190 9-94 (94)
76 cd04971 Ig_TrKABC_d5 Fifth dom 99.1 3.4E-10 7.3E-15 89.9 8.4 65 124-189 2-79 (81)
77 cd05856 Ig2_FGFRL1-like Second 99.1 4.3E-10 9.2E-15 91.2 9.1 75 115-190 4-82 (82)
78 cd05858 Ig3_FGFR-2 Third immun 99.1 4.7E-10 1E-14 92.1 8.8 71 120-190 1-89 (90)
79 KOG4194|consensus 99.1 3.4E-09 7.5E-14 109.7 16.8 181 2-191 588-796 (873)
80 cd04967 Ig1_Contactin First Ig 99.1 8.4E-10 1.8E-14 91.0 10.2 78 105-184 2-87 (91)
81 cd04977 Ig1_NCAM-1_like First 99.1 1E-09 2.2E-14 90.3 10.2 80 109-190 5-92 (92)
82 PHA02785 IL-beta-binding prote 99.1 1.2E-08 2.7E-13 105.9 20.5 156 115-279 36-203 (326)
83 PF00041 fn3: Fibronectin type 99.0 9E-10 2E-14 90.1 8.9 83 484-568 2-85 (85)
84 PF00041 fn3: Fibronectin type 99.0 7.7E-10 1.7E-14 90.5 8.1 83 622-704 1-85 (85)
85 cd05736 Ig2_Follistatin_like S 99.0 1.9E-09 4.2E-14 85.4 8.3 68 123-191 1-74 (76)
86 cd05874 Ig6_NrCAM Sixth immuno 99.0 2E-09 4.4E-14 84.8 8.1 61 123-184 1-71 (77)
87 cd05765 Ig_3 Subgroup of the i 99.0 2.2E-09 4.8E-14 86.6 8.5 71 120-190 1-81 (81)
88 cd05754 Ig3_Perlecan_like Thir 99.0 4.1E-09 8.9E-14 85.6 9.8 76 109-188 6-84 (85)
89 cd05734 Ig7_DSCAM Seventh immu 99.0 2.2E-09 4.8E-14 85.7 8.0 67 123-189 1-78 (79)
90 cd05873 Ig_Sema4D_like Immunog 99.0 5.8E-09 1.3E-13 83.1 9.8 66 111-179 3-71 (87)
91 PHA02826 IL-1 receptor-like pr 99.0 1.3E-08 2.7E-13 98.6 13.9 148 115-276 32-211 (227)
92 cd05875 Ig6_hNeurofascin_like 98.9 3.1E-09 6.8E-14 83.8 8.0 62 123-185 1-72 (77)
93 cd05733 Ig6_L1-CAM_like Sixth 98.9 2.5E-09 5.3E-14 84.7 7.0 61 123-184 1-71 (77)
94 cd05882 Ig1_Necl-1 First (N-te 98.9 5.6E-09 1.2E-13 85.6 9.2 75 115-190 7-95 (95)
95 PHA02826 IL-1 receptor-like pr 98.9 3.6E-08 7.8E-13 95.5 15.9 105 64-181 100-213 (227)
96 cd05752 Ig1_FcgammaR_like Frst 98.9 5.7E-09 1.2E-13 82.1 7.7 66 105-178 1-68 (78)
97 cd05750 Ig_Pro_neuregulin Immu 98.9 5.2E-09 1.1E-13 82.9 7.5 64 123-187 1-74 (75)
98 cd05898 Ig5_KIRREL3 Fifth immu 98.9 2.3E-08 4.9E-13 81.7 11.0 82 104-188 2-97 (98)
99 cd07701 Ig1_Necl-3 First (N-te 98.9 1.4E-08 3E-13 83.8 9.5 77 112-190 5-95 (95)
100 cd05845 Ig2_L1-CAM_like Second 98.9 1.1E-08 2.5E-13 82.4 8.4 76 105-180 3-83 (95)
101 cd05742 Ig1_VEGFR_like First i 98.8 1.5E-08 3.2E-13 82.1 8.8 70 120-190 1-83 (84)
102 cd04979 Ig_Semaphorin_C Immuno 98.8 2.2E-08 4.8E-13 82.1 9.6 75 115-191 6-87 (89)
103 cd05757 Ig2_IL1R_like Second i 98.8 2.2E-08 4.7E-13 81.6 9.1 76 115-191 5-87 (92)
104 cd05729 Ig2_FGFR_like Second i 98.8 3.7E-08 8E-13 80.4 10.2 75 115-190 4-85 (85)
105 cd05871 Ig_Semaphorin_classIII 98.8 4.3E-08 9.3E-13 79.9 10.1 76 115-191 6-89 (91)
106 PF10179 DUF2369: Uncharacteri 98.8 6.6E-06 1.4E-10 81.0 25.6 134 672-812 125-297 (300)
107 cd05895 Ig_Pro_neuregulin-1 Im 98.7 6.2E-08 1.3E-12 76.7 7.4 64 123-187 1-75 (76)
108 cd05717 Ig1_Necl-1-3_like Firs 98.6 2.4E-07 5.1E-12 77.1 9.9 75 115-190 7-95 (95)
109 cd05861 Ig1_PDGFR-alphabeta Fr 98.6 2.9E-07 6.3E-12 74.1 9.9 72 120-191 1-83 (84)
110 cd05727 Ig2_Contactin-2-like S 98.6 1.5E-07 3.3E-12 76.1 7.9 69 112-181 10-85 (96)
111 KOG4802|consensus 98.6 6.5E-07 1.4E-11 88.3 12.9 125 674-802 208-341 (516)
112 smart00408 IGc2 Immunoglobulin 98.6 2.3E-07 5E-12 70.5 7.8 61 119-180 1-63 (63)
113 PF10179 DUF2369: Uncharacteri 98.6 7.1E-05 1.5E-09 73.8 26.0 258 436-711 11-296 (300)
114 KOG4802|consensus 98.6 1.9E-06 4.2E-11 85.1 15.0 178 484-703 147-342 (516)
115 cd07690 Ig1_CD4 First immunogl 98.6 2.6E-07 5.7E-12 75.1 7.6 69 115-183 2-92 (94)
116 cd05753 Ig2_FcgammaR_like Seco 98.5 5.2E-07 1.1E-11 72.3 7.5 63 115-182 9-74 (83)
117 COG3401 Fibronectin type 3 dom 98.5 1.8E-05 4E-10 77.2 18.6 313 511-882 4-332 (343)
118 cd00063 FN3 Fibronectin type 3 98.4 4.1E-06 8.9E-11 69.5 11.5 85 483-570 2-88 (93)
119 smart00409 IG Immunoglobulin. 98.4 5.3E-06 1.1E-10 67.6 11.7 76 115-190 4-85 (86)
120 smart00410 IG_like Immunoglobu 98.4 5.3E-06 1.1E-10 67.6 11.7 76 115-190 4-85 (86)
121 cd00063 FN3 Fibronectin type 3 98.4 4.4E-06 9.6E-11 69.3 11.0 87 622-708 2-90 (93)
122 cd05862 Ig1_VEGFR First immuno 98.4 2.2E-06 4.8E-11 69.2 8.5 72 120-191 1-85 (86)
123 cd05896 Ig1_IL1RAPL-1_like Fir 98.3 4.7E-06 1E-10 67.7 8.8 75 115-190 10-104 (104)
124 PF13895 Ig_2: Immunoglobulin 98.3 3.5E-06 7.5E-11 67.7 8.1 75 105-189 2-79 (80)
125 cd05860 Ig4_SCFR Fourth immuno 98.3 1.9E-05 4E-10 64.0 11.9 77 114-191 12-100 (101)
126 cd05872 Ig_Sema4B_like Immunog 98.2 1.1E-05 2.4E-10 63.9 9.0 70 115-187 6-77 (85)
127 cd05897 Ig2_IL1R2_like Second 98.2 1E-05 2.2E-10 65.7 8.9 69 115-184 5-83 (95)
128 cd05885 Ig2_Necl-4 Second immu 98.2 1.5E-05 3.2E-10 62.2 9.1 58 123-181 2-68 (80)
129 cd05881 Ig1_Necl-2 First (N-te 98.1 3.8E-05 8.1E-10 62.5 10.6 63 115-177 7-83 (95)
130 KOG3632|consensus 98.1 1.9E-05 4.1E-10 86.8 11.3 262 484-806 580-861 (1335)
131 PF00047 ig: Immunoglobulin do 98.1 4.6E-06 9.9E-11 63.4 5.0 55 120-175 1-64 (64)
132 PF13927 Ig_3: Immunoglobulin 98.0 3.3E-06 7.1E-11 66.8 3.1 72 104-177 1-75 (75)
133 cd05774 Ig_CEACAM_D1 First imm 98.0 3.1E-05 6.7E-10 64.6 9.0 75 115-189 8-104 (105)
134 COG3401 Fibronectin type 3 dom 98.0 0.00083 1.8E-08 66.0 18.9 298 439-801 30-332 (343)
135 cd05759 Ig2_KIRREL3-like Secon 98.0 4.1E-05 8.9E-10 61.5 8.5 59 122-181 1-71 (82)
136 smart00060 FN3 Fibronectin typ 97.9 0.00012 2.7E-09 58.7 10.3 78 484-563 3-81 (83)
137 cd05751 Ig1_LILRB1_like First 97.9 6.1E-05 1.3E-09 61.7 7.6 70 105-178 3-75 (91)
138 KOG4228|consensus 97.8 0.00012 2.6E-09 83.2 12.0 138 170-318 1-138 (1087)
139 cd05877 Ig_LP_like Immunoglobu 97.8 0.00017 3.8E-09 61.3 9.8 73 119-191 1-103 (106)
140 cd05900 Ig_Aggrecan Immunoglob 97.8 0.00019 4.2E-09 60.7 9.8 73 119-191 1-109 (112)
141 cd04983 IgV_TCR_alpha_like Imm 97.8 0.00012 2.5E-09 62.9 8.7 69 110-179 4-93 (109)
142 smart00060 FN3 Fibronectin typ 97.8 0.00022 4.8E-09 57.1 9.7 76 623-700 3-82 (83)
143 cd05879 Ig_P0 Immunoglobulin ( 97.7 0.00023 5E-09 60.7 9.7 67 115-181 8-105 (116)
144 cd05714 Ig_CSPGs_LP Immunoglob 97.7 0.00021 4.5E-09 60.8 9.4 73 119-191 1-103 (106)
145 cd05713 Ig_MOG_like Immunoglob 97.7 0.00025 5.5E-09 59.5 9.7 71 120-190 1-99 (100)
146 cd05741 Ig_CEACAM_D1_like Firs 97.7 0.0002 4.2E-09 59.2 8.4 62 120-181 1-82 (92)
147 TIGR00864 PCC polycystin catio 97.7 0.4 8.7E-06 61.8 58.9 288 41-366 1449-1772(2740)
148 cd05771 IgC_Tapasin_R Tapasin- 97.7 0.00076 1.6E-08 60.7 12.2 105 68-178 7-130 (139)
149 cd05899 IgV_TCR_beta Immunoglo 97.6 0.00023 5.1E-09 60.9 8.1 68 110-179 4-95 (110)
150 cd05878 Ig_Aggrecan_like Immun 97.6 0.00052 1.1E-08 58.4 9.8 73 119-191 1-107 (110)
151 cd05718 Ig1_PVR_like First imm 97.6 0.00047 1E-08 57.7 9.2 70 121-190 1-97 (98)
152 KOG3515|consensus 97.6 0.0081 1.8E-07 67.1 20.4 166 102-274 398-576 (741)
153 PHA02987 Ig domain OX-2-like p 97.5 0.0012 2.6E-08 59.6 11.1 77 115-191 25-122 (189)
154 cd00099 IgV Immunoglobulin var 97.5 0.00039 8.4E-09 59.2 7.7 66 115-180 1-91 (105)
155 cd04980 IgV_L_kappa Immunoglob 97.5 0.00054 1.2E-08 58.2 8.3 70 108-178 4-93 (106)
156 cd05880 Ig_EVA1 Immunoglobulin 97.5 0.00092 2E-08 57.5 9.3 67 115-181 8-104 (115)
157 cd05886 Ig1_Nectin-1_like Firs 97.4 0.0017 3.7E-08 53.6 9.9 69 122-190 2-98 (99)
158 cd04982 IgV_TCR_gamma Immunogl 97.4 0.00078 1.7E-08 58.4 8.4 63 115-177 8-98 (116)
159 cd05883 Ig2_Necl-2 Second immu 97.4 0.0016 3.5E-08 51.0 9.0 68 123-191 2-80 (82)
160 cd05887 Ig1_Nectin-3_like Firs 97.4 0.0017 3.7E-08 53.0 9.5 70 121-190 1-95 (96)
161 cd05775 Ig_SLAM-CD84_like_N N- 97.4 0.0005 1.1E-08 57.0 6.5 73 118-190 2-96 (97)
162 cd05715 Ig_P0-like Immunoglobu 97.3 0.0019 4E-08 55.9 9.9 67 115-181 8-105 (116)
163 KOG4367|consensus 97.3 0.00019 4.1E-09 71.5 3.8 81 633-713 451-531 (699)
164 cd05888 Ig1_Nectin-4_like Frst 97.3 0.0019 4E-08 54.0 8.9 69 122-190 2-99 (100)
165 KOG0613|consensus 97.2 0.067 1.5E-06 62.8 23.5 380 453-886 204-615 (1205)
166 KOG4367|consensus 97.2 0.00048 1E-08 68.8 5.0 82 493-577 450-531 (699)
167 cd05761 Ig2_Necl-1-4_like Seco 97.2 0.0027 5.8E-08 50.7 8.5 58 123-181 2-70 (82)
168 cd05901 Ig_Versican Immunoglob 97.1 0.0053 1.1E-07 51.9 10.0 36 156-191 77-114 (117)
169 cd05902 Ig_Neurocan Immunoglob 97.1 0.0037 7.9E-08 52.8 9.1 72 120-191 2-107 (110)
170 PF07686 V-set: Immunoglobulin 97.1 0.0019 4.1E-08 55.9 7.6 64 115-178 11-101 (114)
171 cd07706 IgV_TCR_delta Immunogl 97.1 0.0024 5.2E-08 55.3 8.1 68 109-177 4-93 (116)
172 cd05755 Ig2_ICAM-1_like Second 97.1 0.0035 7.6E-08 51.4 8.3 66 115-181 11-87 (100)
173 cd04984 IgV_L_lambda Immunoglo 97.1 0.002 4.3E-08 53.8 7.2 62 116-177 2-84 (98)
174 KOG3632|consensus 97.1 0.0038 8.3E-08 69.5 11.0 260 204-569 581-860 (1335)
175 cd05846 Ig1_MRC-OX-2_like Firs 97.0 0.0053 1.1E-07 51.0 9.4 71 120-190 1-96 (97)
176 cd00098 IgC Immunoglobulin Con 97.0 0.0023 5E-08 53.1 7.1 62 118-180 11-86 (95)
177 KOG4152|consensus 97.0 0.0033 7.1E-08 64.8 9.1 74 542-616 650-725 (830)
178 cd07705 Ig2_Necl-1 Second immu 97.0 0.0066 1.4E-07 48.5 9.1 57 123-180 2-70 (83)
179 cd05711 Ig_FcalphaRI Immunoglo 97.0 0.0039 8.4E-08 51.3 7.8 69 105-177 2-76 (94)
180 cd07694 Ig2_CD4 Second immunog 96.9 0.0095 2.1E-07 46.6 8.9 74 115-191 9-86 (88)
181 KOG0613|consensus 96.9 0.099 2.1E-06 61.5 20.9 346 448-800 299-711 (1205)
182 KOG3515|consensus 96.9 0.2 4.4E-06 56.4 22.5 60 542-604 657-716 (741)
183 KOG4228|consensus 96.8 0.0098 2.1E-07 68.4 11.3 277 484-877 27-312 (1087)
184 cd05884 Ig2_Necl-3 Second immu 96.7 0.0077 1.7E-07 48.0 7.6 57 123-180 2-70 (83)
185 cd05716 Ig_pIgR Immunoglobulin 96.7 0.0098 2.1E-07 49.6 8.3 65 115-179 2-87 (98)
186 cd07698 IgC_MHC_I_alpha3 Class 96.6 0.011 2.3E-07 48.6 7.9 59 120-179 14-83 (93)
187 cd05771 IgC_Tapasin_R Tapasin- 96.6 0.034 7.4E-07 49.9 11.6 33 159-191 2-36 (139)
188 cd05712 Ig_Siglec_N Immunoglob 96.5 0.013 2.8E-07 50.9 8.3 66 111-177 6-101 (119)
189 KOG4806|consensus 96.5 0.16 3.6E-06 50.1 16.2 258 435-711 165-446 (454)
190 KOG4152|consensus 96.5 0.014 3E-07 60.4 9.3 124 443-567 650-788 (830)
191 PF09294 Interfer-bind: Interf 96.5 0.0067 1.5E-07 51.5 6.2 88 483-575 4-105 (106)
192 PF09294 Interfer-bind: Interf 96.5 0.013 2.8E-07 49.8 7.9 88 719-811 5-105 (106)
193 cd07700 IgV_CD8_beta Immunoglo 96.4 0.013 2.9E-07 49.6 7.5 63 115-177 1-93 (107)
194 TIGR00864 PCC polycystin catio 96.3 6.5 0.00014 51.6 62.6 264 73-375 1841-2128(2740)
195 COG4733 Phage-related protein, 96.3 0.041 8.8E-07 61.1 11.8 145 513-704 637-786 (952)
196 cd07699 IgC_L Immunoglobulin C 96.2 0.015 3.1E-07 48.5 6.6 63 115-178 12-88 (100)
197 cd05889 Ig1_DNAM-1_like First 96.2 0.042 9E-07 45.0 9.1 67 121-187 1-92 (96)
198 cd00096 Ig Immunoglobulin doma 96.2 0.023 5E-07 43.5 7.6 56 123-179 1-66 (74)
199 cd05735 Ig8_DSCAM Eight immuno 96.2 0.033 7.2E-07 45.1 8.5 73 207-288 6-82 (88)
200 PHA03376 BARF1; Provisional 96.1 0.064 1.4E-06 48.3 10.1 66 115-180 21-111 (221)
201 cd05767 IgC_MHC_II_alpha Class 96.0 0.04 8.7E-07 45.0 7.8 58 119-177 14-82 (94)
202 PF01108 Tissue_fac: Tissue fa 96.0 0.034 7.4E-07 47.1 7.7 79 481-564 21-104 (107)
203 PF08205 C2-set_2: CD80-like C 95.9 0.019 4.2E-07 46.8 5.9 64 116-180 10-85 (89)
204 cd05720 Ig_CD8_alpha Immunoglo 95.9 0.027 5.9E-07 47.4 6.9 62 116-177 2-90 (104)
205 KOG4806|consensus 95.9 0.42 9.1E-06 47.4 15.4 128 677-811 286-446 (454)
206 cd05766 IgC_MHC_II_beta Class 95.9 0.047 1E-06 44.7 8.0 59 119-178 13-82 (94)
207 PF01108 Tissue_fac: Tissue fa 95.9 0.027 5.9E-07 47.6 6.7 77 718-799 23-103 (107)
208 cd05770 IgC_beta2m Class I maj 95.8 0.042 9.2E-07 44.7 7.3 57 119-177 14-81 (93)
209 cd05719 Ig2_PVR_like Second im 95.7 0.072 1.6E-06 43.7 8.3 60 120-180 15-83 (95)
210 cd05772 IgC_SIRP Signal-regula 95.6 0.1 2.2E-06 44.2 9.0 64 115-179 16-92 (111)
211 cd05762 Ig8_MLCK Eighth immuno 95.6 0.085 1.9E-06 43.7 8.4 39 250-288 53-91 (98)
212 cd07692 Ig_CD3_epsilon Immunog 95.4 0.06 1.3E-06 39.5 5.8 51 117-177 4-55 (65)
213 cd04981 IgV_H Immunoglobulin ( 95.3 0.09 1.9E-06 45.3 8.0 63 115-177 7-97 (117)
214 smart00407 IGc1 Immunoglobulin 95.2 0.098 2.1E-06 40.8 7.2 56 122-178 1-70 (75)
215 cd07703 Ig2_Nectin-2_like Seco 95.1 0.12 2.5E-06 42.3 7.6 61 120-181 15-84 (95)
216 cd05847 IgC_CH2_IgE CH2 domain 94.8 0.19 4.1E-06 41.1 8.1 60 119-179 13-86 (94)
217 cd07696 IgC_CH3 CH3 domain (th 94.8 0.12 2.5E-06 42.5 6.9 63 116-178 10-85 (96)
218 cd05851 Ig3_Contactin-1 Third 94.6 0.14 3E-06 41.5 7.0 28 253-280 53-80 (88)
219 cd07704 Ig2_Nectin-3-4_like Se 94.6 0.35 7.7E-06 39.4 8.9 63 115-178 11-83 (97)
220 cd05748 Ig_Titin_like Immunogl 94.5 0.11 2.3E-06 40.5 5.7 63 207-279 4-66 (74)
221 cd05894 Ig_C5_MyBP-C C5 immuno 94.4 0.12 2.5E-06 41.7 5.9 67 204-279 12-78 (86)
222 cd05769 IgC_TCR_beta T cell re 94.3 0.22 4.7E-06 42.4 7.6 66 115-181 13-94 (115)
223 cd05768 IgC_CH4 CH4 domain (fo 94.2 0.13 2.9E-06 42.8 6.0 60 117-177 13-89 (102)
224 cd07691 Ig_CD3_gamma_delta Imm 94.2 0.13 2.9E-06 37.9 5.1 47 120-177 6-54 (69)
225 PF07654 C1-set: Immunoglobuli 94.1 0.2 4.4E-06 40.0 6.8 60 119-179 7-77 (83)
226 cd04986 IgC_CH2 CH2 domain (se 94.1 0.21 4.5E-06 41.0 6.8 63 117-179 16-89 (99)
227 cd05747 Ig5_Titin_like M5, fif 94.0 0.47 1E-05 38.8 8.9 29 251-279 57-85 (92)
228 cd04972 Ig_TrkABC_d4 Fourth do 93.9 0.3 6.6E-06 39.7 7.7 29 252-280 55-83 (90)
229 cd05893 Ig_Palladin_C C-termin 93.9 0.1 2.2E-06 40.6 4.6 28 253-280 41-68 (75)
230 smart00406 IGv Immunoglobulin 93.9 0.17 3.6E-06 40.1 6.0 53 122-174 1-80 (81)
231 COG4733 Phage-related protein, 93.9 0.25 5.4E-06 55.2 8.8 144 654-804 639-786 (952)
232 cd05854 Ig6_Contactin-2 Sixth 93.8 0.23 5.1E-06 39.8 6.6 36 252-287 46-81 (85)
233 cd04968 Ig3_Contactin_like Thi 93.8 0.27 5.9E-06 39.8 7.1 30 251-280 51-80 (88)
234 cd05743 Ig_Perlecan_D2_like Im 93.8 0.38 8.3E-06 37.8 7.7 30 252-281 41-70 (78)
235 cd05892 Ig_Myotilin_C C-termin 93.7 0.17 3.6E-06 39.4 5.4 65 207-280 3-68 (75)
236 cd05866 Ig1_NCAM-2 First immun 93.5 0.24 5.3E-06 40.3 6.2 28 252-279 55-82 (92)
237 cd07697 IgC_TCR_gamma T cell r 93.4 0.28 6.1E-06 40.1 6.4 57 119-177 15-83 (96)
238 cd05870 Ig5_NCAM-2 Fifth immun 93.3 0.52 1.1E-05 39.1 8.2 29 252-280 63-91 (98)
239 cd05730 Ig3_NCAM-1_like Third 93.2 0.42 9.1E-06 39.4 7.4 28 253-280 58-85 (95)
240 cd05853 Ig6_Contactin-4 Sixth 92.9 0.28 6E-06 39.2 5.6 68 214-288 14-82 (85)
241 cd05760 Ig2_PTK7 Second immuno 92.9 0.44 9.5E-06 37.4 6.7 28 253-280 38-65 (77)
242 cd05773 Ig8_hNephrin_like Eigh 92.8 0.55 1.2E-05 39.8 7.7 28 253-280 69-97 (109)
243 cd05744 Ig_Myotilin_C_like Imm 92.8 0.28 6.2E-06 38.2 5.4 28 253-280 41-68 (75)
244 cd05852 Ig5_Contactin-1 Fifth 92.7 0.29 6.4E-06 37.8 5.3 28 253-280 39-66 (73)
245 cd05742 Ig1_VEGFR_like First i 92.5 0.42 9.1E-06 38.3 6.3 70 207-281 6-77 (84)
246 cd05725 Ig3_Robo Third immunog 92.5 0.28 6E-06 37.5 5.0 27 253-279 35-61 (69)
247 cd05876 Ig3_L1-CAM Third immun 92.3 0.27 5.8E-06 37.8 4.7 29 252-280 35-63 (71)
248 TIGR00868 hCaCC calcium-activa 92.2 30 0.00065 41.0 25.2 84 720-804 759-859 (863)
249 cd04971 Ig_TrKABC_d5 Fifth dom 92.0 0.61 1.3E-05 36.9 6.5 29 252-280 45-73 (81)
250 cd05736 Ig2_Follistatin_like S 91.9 0.72 1.6E-05 36.0 6.9 30 253-282 39-68 (76)
251 cd05867 Ig4_L1-CAM_like Fourth 91.8 0.35 7.5E-06 37.8 4.9 27 253-279 41-67 (76)
252 cd05868 Ig4_NrCAM Fourth immun 91.8 0.29 6.4E-06 38.2 4.4 30 253-282 41-70 (76)
253 cd04985 IgC_CH1 CH1 domain (fi 91.7 0.97 2.1E-05 37.1 7.5 58 119-178 15-86 (95)
254 cd05750 Ig_Pro_neuregulin Immu 91.6 0.74 1.6E-05 35.7 6.7 28 252-279 42-69 (75)
255 cd05737 Ig_Myomesin_like_C C-t 91.6 0.93 2E-05 37.0 7.5 28 252-279 57-84 (92)
256 cd04970 Ig6_Contactin_like Six 91.5 0.51 1.1E-05 37.9 5.7 31 252-282 46-76 (85)
257 cd05863 Ig2_VEGFR-3 Second imm 91.4 0.34 7.3E-06 36.6 4.2 27 253-279 31-57 (67)
258 cd05763 Ig_1 Subgroup of the i 91.3 0.64 1.4E-05 36.1 6.0 28 253-280 40-67 (75)
259 cd05732 Ig5_NCAM-1_like Fifth 91.3 0.41 8.9E-06 39.5 5.2 29 252-280 61-89 (96)
260 cd05721 IgV_CTLA-4 Immunoglobu 91.3 1.3 2.8E-05 37.3 7.8 62 115-176 8-94 (115)
261 cd05723 Ig4_Neogenin Fourth im 91.2 0.44 9.6E-06 36.6 4.9 28 253-280 37-64 (71)
262 cd04973 Ig1_FGFR First immunog 91.2 0.84 1.8E-05 35.9 6.6 27 253-279 45-71 (79)
263 cd05745 Ig3_Peroxidasin Third 91.1 0.45 9.7E-06 36.9 4.8 28 253-280 40-67 (74)
264 cd05891 Ig_M-protein_C C-termi 90.9 0.92 2E-05 37.0 6.7 28 253-280 58-85 (92)
265 cd05726 Ig4_Robo Fhird immunog 90.7 1.3 2.8E-05 36.0 7.4 35 253-287 47-81 (90)
266 cd04978 Ig4_L1-NrCAM_like Four 90.6 0.46 9.9E-06 37.1 4.6 29 252-280 40-68 (76)
267 cd05865 Ig1_NCAM-1 First immun 90.6 0.94 2E-05 37.3 6.5 28 253-280 60-88 (96)
268 cd05869 Ig5_NCAM-1 Fifth immun 90.5 0.78 1.7E-05 37.9 6.1 29 252-280 62-90 (97)
269 PF07495 Y_Y_Y: Y_Y_Y domain; 90.5 1.2 2.5E-05 33.6 6.6 45 836-882 9-54 (66)
270 PF07354 Sp38: Zona-pellucida- 90.3 0.46 9.9E-06 45.7 4.9 46 134-179 12-60 (271)
271 cd05740 Ig_CEACAM_D4 Fourth im 90.3 1.1 2.4E-05 36.5 6.6 27 253-279 55-81 (91)
272 cd05895 Ig_Pro_neuregulin-1 Im 90.2 0.99 2.2E-05 35.2 6.1 29 251-279 42-70 (76)
273 PF09067 EpoR_lig-bind: Erythr 90.1 0.91 2E-05 37.7 5.9 79 481-564 7-95 (104)
274 PF09067 EpoR_lig-bind: Erythr 90.0 1.4 3.1E-05 36.6 7.0 78 199-278 6-95 (104)
275 cd05731 Ig3_L1-CAM_like Third 89.9 0.41 9E-06 36.7 3.7 27 253-279 36-62 (71)
276 cd05746 Ig4_Peroxidasin Fourth 89.3 0.71 1.5E-05 35.2 4.5 28 253-280 36-63 (69)
277 cd04975 Ig4_SCFR_like Fourth i 89.2 1.1 2.3E-05 37.4 5.8 28 252-279 64-91 (101)
278 cd05855 Ig_TrkB_d5 Fifth domai 89.1 2.5 5.5E-05 33.1 7.5 29 252-280 43-71 (79)
279 cd05738 Ig2_RPTP_IIa_LAR_like 89.0 1.2 2.7E-05 34.4 5.8 27 253-279 38-64 (74)
280 cd05857 Ig2_FGFR Second immuno 88.9 0.9 1.9E-05 36.4 5.1 27 253-279 51-77 (85)
281 cd05850 Ig1_Contactin-2 First 88.7 2.1 4.5E-05 35.1 7.2 27 253-279 58-85 (94)
282 cd04969 Ig5_Contactin_like Fif 88.7 0.95 2.1E-05 34.9 5.0 28 253-280 39-66 (73)
283 PF07679 I-set: Immunoglobulin 88.6 0.3 6.5E-06 39.7 2.2 30 250-279 53-82 (90)
284 cd05728 Ig4_Contactin-2-like F 88.5 0.62 1.3E-05 37.4 3.9 27 253-279 51-77 (85)
285 cd05858 Ig3_FGFR-2 Third immun 88.4 2.4 5.3E-05 34.3 7.4 30 253-282 55-84 (90)
286 cd07689 Ig2_VCAM-1 Second immu 88.0 2.2 4.7E-05 34.7 6.4 62 118-180 13-87 (99)
287 cd05764 Ig_2 Subgroup of the i 87.9 1 2.2E-05 34.9 4.6 27 253-279 40-66 (74)
288 cd04974 Ig3_FGFR Third immunog 87.8 3.4 7.4E-05 33.5 7.9 31 253-283 55-85 (90)
289 PHA02633 hypothetical protein; 87.8 1.5 3.3E-05 31.7 4.8 36 156-191 16-53 (63)
290 cd05862 Ig1_VEGFR First immuno 87.8 2.4 5.3E-05 34.0 6.9 31 252-282 49-79 (86)
291 KOG4597|consensus 87.8 0.87 1.9E-05 47.5 5.1 85 106-191 198-292 (560)
292 cd05864 Ig2_VEGFR-2 Second imm 87.7 1.4 3.1E-05 33.6 5.2 28 253-280 34-61 (70)
293 cd05848 Ig1_Contactin-5 First 87.6 2.7 5.8E-05 34.5 7.2 27 253-279 58-85 (94)
294 cd05856 Ig2_FGFRL1-like Second 87.6 1.4 3E-05 34.9 5.4 28 252-279 47-74 (82)
295 cd05733 Ig6_L1-CAM_like Sixth 87.3 2.1 4.6E-05 33.4 6.1 28 252-279 38-69 (77)
296 PF08204 V-set_CD47: CD47 immu 87.1 0.71 1.5E-05 39.7 3.5 73 119-191 26-120 (130)
297 cd05861 Ig1_PDGFR-alphabeta Fr 86.9 4.9 0.00011 32.0 8.2 26 252-277 45-70 (84)
298 KOG1948|consensus 86.8 43 0.00092 38.6 17.3 49 648-696 918-967 (1165)
299 cd05859 Ig4_PDGFR-alpha Fourth 86.8 1.1 2.5E-05 37.2 4.5 28 253-280 65-92 (101)
300 cd05751 Ig1_LILRB1_like First 86.6 4.8 0.0001 32.7 8.1 72 213-287 15-88 (91)
301 cd04977 Ig1_NCAM-1_like First 86.5 2.6 5.6E-05 34.4 6.5 28 251-278 55-82 (92)
302 cd05765 Ig_3 Subgroup of the i 86.4 2.1 4.6E-05 33.7 5.9 29 252-280 46-74 (81)
303 cd04976 Ig2_VEGFR Second immun 86.2 0.77 1.7E-05 35.3 3.0 27 253-279 35-61 (71)
304 cd05724 Ig2_Robo Second immuno 86.2 4.6 0.0001 32.2 7.9 29 252-280 50-78 (86)
305 cd05754 Ig3_Perlecan_like Thir 86.1 2.2 4.8E-05 34.1 5.8 64 214-280 16-79 (85)
306 cd05849 Ig1_Contactin-1 First 85.2 4.1 9E-05 33.2 7.1 27 253-279 57-84 (93)
307 PLN02533 probable purple acid 85.0 6.3 0.00014 43.0 10.3 81 622-713 42-135 (427)
308 TIGR00868 hCaCC calcium-activa 84.6 96 0.0021 37.0 25.7 84 480-564 754-854 (863)
309 PF07495 Y_Y_Y: Y_Y_Y domain; 84.5 5 0.00011 30.1 6.8 35 768-803 21-56 (66)
310 PF09240 IL6Ra-bind: Interleuk 84.2 7.5 0.00016 32.2 8.3 76 203-279 1-87 (99)
311 PF09240 IL6Ra-bind: Interleuk 84.0 12 0.00025 31.1 9.3 79 485-564 2-86 (99)
312 KOG1225|consensus 83.6 3 6.4E-05 45.6 6.9 154 622-792 367-524 (525)
313 cd05739 Ig3_RPTP_IIa_LAR_like 83.6 4.1 8.9E-05 31.0 6.0 25 253-279 38-62 (69)
314 cd05734 Ig7_DSCAM Seventh immu 83.5 3.8 8.3E-05 32.1 6.0 27 253-279 44-70 (79)
315 PLN02533 probable purple acid 82.9 10 0.00022 41.4 10.8 84 718-814 42-136 (427)
316 KOG1480|consensus 82.7 0.74 1.6E-05 51.1 2.1 74 107-182 132-209 (909)
317 PHA02865 MHC-like TNF binding 81.5 6.8 0.00015 40.1 8.1 38 100-142 199-238 (338)
318 cd05874 Ig6_NrCAM Sixth immuno 81.4 9.7 0.00021 29.7 7.5 27 253-279 39-69 (77)
319 cd05758 Ig5_KIRREL3-like Fifth 81.4 12 0.00026 30.8 8.5 28 253-280 64-92 (98)
320 PHA02982 hypothetical protein; 81.3 4.5 9.9E-05 37.4 6.1 68 115-182 34-126 (251)
321 cd05749 Ig2_Tyro3_like Second 80.9 7.9 0.00017 30.6 6.9 25 253-279 49-73 (81)
322 PHA03042 CD47-like protein; Pr 80.8 6.3 0.00014 38.4 7.2 69 120-191 31-105 (286)
323 cd04967 Ig1_Contactin First Ig 80.2 6.7 0.00015 31.8 6.5 27 253-279 58-85 (91)
324 PHA03052 Hypothetical protein; 79.9 9.2 0.0002 28.2 6.0 33 114-147 6-41 (69)
325 PF06328 Lep_receptor_Ig: Ig-l 78.3 12 0.00026 30.2 7.1 60 115-175 13-81 (89)
326 cd05898 Ig5_KIRREL3 Fifth immu 78.1 26 0.00057 28.8 9.2 30 250-279 61-91 (98)
327 cd05711 Ig_FcalphaRI Immunoglo 77.3 20 0.00043 29.3 8.4 72 213-287 14-92 (94)
328 cd05875 Ig6_hNeurofascin_like 76.4 9.7 0.00021 29.7 6.1 27 253-279 39-69 (77)
329 smart00408 IGc2 Immunoglobulin 75.3 11 0.00023 27.3 6.0 26 252-277 38-63 (63)
330 cd05727 Ig2_Contactin-2-like S 75.2 12 0.00027 30.6 6.5 64 213-278 17-85 (96)
331 PF00047 ig: Immunoglobulin do 75.1 13 0.00028 27.4 6.4 19 254-272 46-64 (64)
332 PHA03376 BARF1; Provisional 75.0 72 0.0016 29.6 12.1 43 120-162 139-185 (221)
333 cd05756 Ig1_IL1R_like First im 74.8 10 0.00023 30.9 6.1 27 253-279 60-86 (94)
334 PF08329 ChitinaseA_N: Chitina 74.5 16 0.00034 31.8 7.2 90 728-829 35-125 (133)
335 cd05729 Ig2_FGFR_like Second i 73.7 6.1 0.00013 31.3 4.5 27 253-279 51-77 (85)
336 cd05882 Ig1_Necl-1 First (N-te 72.6 31 0.00067 28.3 8.4 24 252-275 61-84 (95)
337 cd05753 Ig2_FcgammaR_like Seco 72.4 22 0.00048 28.2 7.3 35 252-287 47-81 (83)
338 cd07702 Ig2_VEGFR-1 Second imm 71.6 12 0.00027 28.6 5.4 24 253-276 36-59 (72)
339 KOG1225|consensus 71.3 7.1 0.00015 42.8 5.4 114 150-270 410-524 (525)
340 cd05757 Ig2_IL1R_like Second i 71.1 8.2 0.00018 31.4 4.6 28 252-279 51-78 (92)
341 PF13750 Big_3_3: Bacterial Ig 71.1 51 0.0011 30.1 10.2 23 860-882 116-138 (158)
342 cd04979 Ig_Semaphorin_C Immuno 70.7 19 0.00041 28.9 6.8 25 253-277 51-75 (89)
343 PF06832 BiPBP_C: Penicillin-B 69.1 59 0.0013 26.2 9.8 75 102-183 8-85 (89)
344 KOG1948|consensus 67.6 1.4E+02 0.0031 34.7 14.2 24 538-561 945-968 (1165)
345 cd07693 Ig1_Robo First immunog 67.6 35 0.00077 27.8 8.1 21 260-280 71-91 (100)
346 cd05880 Ig_EVA1 Immunoglobulin 67.3 62 0.0013 27.6 9.5 28 251-278 77-104 (115)
347 PF13754 Big_3_4: Bacterial Ig 66.2 18 0.0004 25.8 5.0 41 856-897 14-54 (54)
348 cd07701 Ig1_Necl-3 First (N-te 65.9 32 0.0007 28.1 7.2 26 251-276 60-85 (95)
349 cd05717 Ig1_Necl-1-3_like Firs 65.5 42 0.00091 27.3 8.0 25 252-276 61-85 (95)
350 cd05871 Ig_Semaphorin_classIII 63.6 53 0.0011 26.6 8.0 25 253-277 53-78 (91)
351 cd07690 Ig1_CD4 First immunogl 63.0 31 0.00067 28.2 6.4 28 251-278 63-90 (94)
352 cd05752 Ig1_FcgammaR_like Frst 62.8 66 0.0014 25.1 8.1 55 213-275 14-68 (78)
353 cd05774 Ig_CEACAM_D1 First imm 59.5 79 0.0017 26.5 8.4 71 207-277 18-94 (105)
354 cd05722 Ig1_Neogenin First imm 58.1 56 0.0012 26.5 7.4 26 254-279 55-86 (95)
355 PF13754 Big_3_4: Bacterial Ig 57.9 38 0.00082 24.2 5.4 36 776-812 15-50 (54)
356 cd05886 Ig1_Nectin-1_like Firs 57.6 56 0.0012 27.0 7.2 27 251-277 61-88 (99)
357 cd05890 Ig2_Nectin-1_like Seco 56.8 37 0.00079 27.4 5.4 59 122-181 22-89 (98)
358 PF13927 Ig_3: Immunoglobulin 56.2 18 0.00039 27.4 4.0 25 250-274 51-75 (75)
359 cd05873 Ig_Sema4D_like Immunog 56.2 31 0.00067 27.7 5.2 24 253-276 48-71 (87)
360 PF14292 SusE: SusE outer memb 53.4 1.5E+02 0.0032 25.6 10.0 71 488-558 37-120 (122)
361 PF03921 ICAM_N: Intercellular 52.6 1.2E+02 0.0027 24.5 9.9 76 110-191 9-86 (91)
362 smart00409 IG Immunoglobulin. 52.2 1E+02 0.0023 23.5 8.4 27 252-278 50-76 (86)
363 smart00410 IG_like Immunoglobu 52.2 1E+02 0.0023 23.5 8.4 27 252-278 50-76 (86)
364 PF14292 SusE: SusE outer memb 52.2 1.6E+02 0.0034 25.5 10.8 70 723-794 37-120 (122)
365 PF13753 SWM_repeat: Putative 51.9 1.5E+02 0.0033 30.9 11.2 124 779-904 5-148 (317)
366 cd05881 Ig1_Necl-2 First (N-te 51.7 1.3E+02 0.0029 24.6 8.5 26 250-275 59-84 (95)
367 cd05845 Ig2_L1-CAM_like Second 50.7 46 0.00099 27.2 5.4 26 252-277 57-83 (95)
368 PHA02579 7 baseplate wedge sub 50.4 52 0.0011 37.3 7.3 74 484-561 7-87 (1030)
369 PF11465 Receptor_2B4: Natural 50.0 53 0.0012 27.2 5.5 60 123-183 28-98 (108)
370 cd02848 Chitinase_N_term Chiti 49.9 1.5E+02 0.0033 24.7 8.1 75 490-573 28-102 (106)
371 PF13750 Big_3_3: Bacterial Ig 49.2 2.1E+02 0.0046 26.1 11.8 23 679-701 116-138 (158)
372 cd05741 Ig_CEACAM_D1_like Firs 48.8 1.4E+02 0.003 23.9 8.8 26 253-278 57-82 (92)
373 PHA02914 Immunoglobulin-like d 48.8 1.1E+02 0.0024 31.9 8.8 68 111-179 270-369 (500)
374 cd05759 Ig2_KIRREL3-like Secon 47.8 92 0.002 24.3 6.9 68 206-278 3-71 (82)
375 cd05897 Ig2_IL1R2_like Second 47.5 32 0.0007 28.1 4.1 26 253-278 55-80 (95)
376 cd05888 Ig1_Nectin-4_like Frst 47.2 76 0.0017 26.2 6.5 28 250-277 61-89 (100)
377 PF07353 Uroplakin_II: Uroplak 45.8 94 0.002 27.7 6.7 26 853-878 99-124 (184)
378 PHA03189 UL14 tegument protein 45.1 1.4E+02 0.003 29.9 8.5 23 115-137 62-86 (348)
379 TIGR03000 plancto_dom_1 Planct 43.0 54 0.0012 25.1 4.3 30 851-880 24-54 (75)
380 cd05878 Ig_Aggrecan_like Immun 42.4 73 0.0016 26.9 5.8 28 251-278 70-97 (110)
381 cd04983 IgV_TCR_alpha_like Imm 41.8 2E+02 0.0044 23.8 8.8 26 251-276 68-93 (109)
382 cd05715 Ig_P0-like Immunoglobu 41.5 2.2E+02 0.0048 24.1 9.4 27 252-278 79-105 (116)
383 PF10342 GPI-anchored: Ser-Thr 40.8 1.9E+02 0.0041 23.2 7.9 59 214-272 12-78 (93)
384 cd05899 IgV_TCR_beta Immunoglo 39.9 1.5E+02 0.0034 24.8 7.5 26 251-276 70-95 (110)
385 cd00099 IgV Immunoglobulin var 38.6 2.1E+02 0.0046 23.4 8.1 27 251-277 65-91 (105)
386 cd05879 Ig_P0 Immunoglobulin ( 38.6 2.5E+02 0.0055 24.0 10.1 29 250-278 77-105 (116)
387 PF11344 DUF3146: Protein of u 38.3 21 0.00045 27.0 1.5 17 860-876 64-80 (80)
388 cd05714 Ig_CSPGs_LP Immunoglob 38.0 29 0.00062 29.0 2.7 29 250-278 65-93 (106)
389 PF02010 REJ: REJ domain; Int 37.0 44 0.00095 37.0 4.7 26 253-278 148-175 (440)
390 cd05887 Ig1_Nectin-3_like Firs 37.0 1.7E+02 0.0036 24.1 6.8 29 250-278 57-86 (96)
391 PHA02579 7 baseplate wedge sub 36.9 1E+02 0.0022 35.2 6.9 70 720-796 8-86 (1030)
392 cd05846 Ig1_MRC-OX-2_like Firs 36.0 1.7E+02 0.0036 23.9 6.9 25 250-274 58-82 (97)
393 cd05860 Ig4_SCFR Fourth immuno 35.8 1.5E+02 0.0032 24.7 6.2 28 252-279 64-91 (101)
394 cd04984 IgV_L_lambda Immunoglo 34.7 2.5E+02 0.0054 22.8 7.9 25 250-274 60-84 (98)
395 PF11344 DUF3146: Protein of u 33.5 29 0.00063 26.3 1.6 15 781-795 66-80 (80)
396 KOG3834|consensus 33.3 72 0.0016 33.7 4.9 70 487-556 67-137 (462)
397 cd05877 Ig_LP_like Immunoglobu 33.2 36 0.00077 28.5 2.5 27 252-278 67-93 (106)
398 PF02010 REJ: REJ domain; Int 32.9 14 0.00031 40.8 0.0 42 773-816 258-301 (440)
399 smart00089 PKD Repeats in poly 32.1 2.4E+02 0.0051 21.7 7.5 62 119-189 13-77 (79)
400 PF08329 ChitinaseA_N: Chitina 32.1 1.5E+02 0.0033 26.0 6.0 72 211-288 34-106 (133)
401 PF10342 GPI-anchored: Ser-Thr 32.1 2.7E+02 0.0058 22.3 8.5 59 496-557 13-77 (93)
402 cd05872 Ig_Sema4B_like Immunog 32.0 1.7E+02 0.0036 23.4 5.9 22 253-274 47-68 (85)
403 cd05713 Ig_MOG_like Immunoglob 32.0 47 0.001 27.3 3.0 26 252-277 64-89 (100)
404 cd05900 Ig_Aggrecan Immunoglob 30.7 57 0.0012 27.7 3.2 28 251-278 72-99 (112)
405 PF05790 C2-set: Immunoglobuli 29.6 2.8E+02 0.0061 21.8 9.5 50 134-190 26-78 (80)
406 cd07694 Ig2_CD4 Second immunog 29.5 2.4E+02 0.0052 22.7 6.1 60 214-275 14-73 (88)
407 PF09423 PhoD: PhoD-like phosp 27.9 2E+02 0.0042 32.0 7.8 35 675-712 64-98 (453)
408 PHA03282 envelope glycoprotein 27.3 1.7E+02 0.0038 31.3 6.5 27 150-176 116-144 (540)
409 PF09423 PhoD: PhoD-like phosp 27.0 72 0.0016 35.4 4.2 37 854-893 62-98 (453)
410 PF00801 PKD: PKD domain; Int 25.6 1.9E+02 0.0041 21.7 5.1 59 115-182 6-67 (69)
411 cd05775 Ig_SLAM-CD84_like_N N- 24.0 86 0.0019 25.7 3.1 28 251-278 59-86 (97)
412 cd02848 Chitinase_N_term Chiti 23.6 4.4E+02 0.0095 22.1 6.9 27 863-890 76-102 (106)
413 cd05901 Ig_Versican Immunoglob 23.2 87 0.0019 26.8 3.0 28 252-279 78-105 (117)
414 cd05712 Ig_Siglec_N Immunoglob 23.2 4.7E+02 0.01 22.3 8.9 26 250-275 77-102 (119)
415 cd04980 IgV_L_kappa Immunoglob 22.6 4E+02 0.0088 22.0 7.1 25 251-275 69-93 (106)
416 PF12245 Big_3_2: Bacterial Ig 22.5 1.5E+02 0.0033 21.7 3.8 23 867-889 23-45 (60)
417 COG3979 Uncharacterized protei 20.8 1.9E+02 0.0041 27.1 5.0 87 620-712 4-91 (181)
418 PHA03240 envelope glycoprotein 20.0 2.1E+02 0.0045 27.0 4.8 67 115-181 33-130 (258)
No 1
>KOG4221|consensus
Probab=100.00 E-value=2.2e-61 Score=522.32 Aligned_cols=818 Identities=22% Similarity=0.298 Sum_probs=593.7
Q ss_pred CcceeeeccceEEEEe--------cCCCCCcceeeEeeCCCCCCCCcEEEeccCCceEEEEeCCCC-----------CCC
Q psy8771 2 DTRCYVESPEEVFIIL--------CPLPPLIPGYILVTEPGTAPRDVQVRPLSSSTMVIQWDEPET-----------PNG 62 (904)
Q Consensus 2 ~~~~~~~~~~~~~~~~--------~~~~p~~~~~~~~~~p~~~p~~l~~~~~~~~s~~v~W~~~~~-----------~~g 62 (904)
.|||.+... ++-.|+ ..+++--++.+..+.-.+.+.-+.|..-.++...|.|.+... ++|
T Consensus 115 ~Yqc~atv~-~~gsi~Sr~a~v~~a~~~~f~~~~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~~r~i~lpsG 193 (1381)
T KOG4221|consen 115 VYQCLATVE-DVGSILSRTAKVALAGLADFALQPESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLPLDSRVIVLPSG 193 (1381)
T ss_pred eEEEEEEcc-ccceeecceEEEEecccCccccCccceeEecCCcEEEEEEEcCccCceeEEecccccccCCCcEEEcCCC
Confidence 489999887 333333 335555556555555555788888888888888999987754 266
Q ss_pred ceecccccccccc-eEEEEeeeccCCeeeeeeeecc-CCCCCCCCeEEcCCCCceEEecCCCeEEEEEEccCCCCeEEEe
Q psy8771 63 QITHPPTRAARSH-ARLAAQSVLRRGRLAHAVRQVA-DPVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWR 140 (904)
Q Consensus 63 ~i~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~v~-~~~~~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~ 140 (904)
.+....+.+.+.+ .++++..+...+...++.+.+. ++....--.|...|.+ .++.+|+++.|+|.+.|.|+|.|.|.
T Consensus 194 ~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~-~~v~~g~~v~leCvvs~~p~p~v~Wl 272 (1381)
T KOG4221|consen 194 ALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSN-AVVVEGDDVVLECVVSGVPKPSVKWL 272 (1381)
T ss_pred cEEecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCc-cccccCCcEEEEEEecCCCCCceEEe
Confidence 6666666666433 3444444444444445555554 3323333337888888 99999999999999999999999999
Q ss_pred eCCccccC-CCCceee-cceEEEEeee--cCCeEEEEEEEecCcceEEEEEEEEEeecCCCCCCCCCCcceEEEeecCCe
Q psy8771 141 KGQNIELT-PDDKLPV-GRNVLTLDRV--TESENYTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISEVTATS 216 (904)
Q Consensus 141 k~~~~~~~-~~~~~~~-~~~~l~i~~l--~d~g~Y~c~a~n~~g~~~~~~~l~v~~~~~~~~~~P~~p~~l~~~~~~~~s 216 (904)
|| +..+. ++.|+.. ..++|.|.++ .|+|.|+|+|.|......+++.|.|+.+ ...+..|.++...+ +
T Consensus 273 rn-g~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~----P~~~~~p~~l~A~e----~ 343 (1381)
T KOG4221|consen 273 RN-GEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAP----PGFTKAPTTLVAHE----S 343 (1381)
T ss_pred eC-CeeeeecceEEEEecccceEEeccccccCceEEEEecCCCcccccceEEEEEcC----CCCCCCCcceeeee----c
Confidence 99 66554 3445543 6889999999 5899999999998888899999999922 23344666665433 6
Q ss_pred EEEEEeCC--CccceEEEEEEEeCC-CCCCeEEeecceeceEEEcCCCCCCeEEEEEEEEcCCCCCCCCCCeEEecCCC-
Q psy8771 217 VRLDWTYP--SETLLYYVIQYKPKA-ANTPYSEISGIITTYYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGET- 292 (904)
Q Consensus 217 v~l~W~~~--~~~~~~y~v~~~~~~-~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~s~~s~~~~~~t~~~- 292 (904)
..++|+.+ +.++..|++....+- ....+..+.+.. . +.|.++-..++..|+|.|.|+.|....+..+.+...+.
T Consensus 344 ~die~ec~~~g~p~p~v~w~kNgd~~ipsdy~ki~~~~-~-lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~~ 421 (1381)
T KOG4221|consen 344 MDIEFECPVSGKPIPTVRWYKNGDRIIPSDYFKIVGGG-N-LRILGIVKSDEGFYQCVAENDAGSAQAAAQLEVVPQPAS 421 (1381)
T ss_pred cceeEeCCCCCCCcceEEEEecCcccCcccceEecCCC-C-cEEEEEecccchhhhhhhccCcccccchhhheeccCCcc
Confidence 67888877 555665554433210 012333343332 2 78888888888888999999999876665554443322
Q ss_pred ----CCCCCCCceEecccCCCeeEEEecCCCCCCceeeEEEEEeec-------------eeEEEEEcCCCCCcEEEEEEE
Q psy8771 293 ----EPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITAKHHRRIG-------------LVETYSLTGLYPNTLYYIWLA 355 (904)
Q Consensus 293 ----~p~~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~~~~~~~~~~-------------~~~~~~~~~L~~~~~Y~v~v~ 355 (904)
.-+..|..+.+...+.+.+.++|.+|...++.+..|.+.... ......+..|.+.+.|.|+|.
T Consensus 422 ~~s~~~~sap~~lv~~~~~srfi~~tw~~p~~~~g~i~~~~v~~~~~~~~rer~~~tss~g~~~tv~nl~p~t~Y~~rv~ 501 (1381)
T KOG4221|consen 422 ASSDLLPSAPRDLVANLVSSRFIQLTWRPPAQISGNISTYTVFYKVEGDVRERLQNTSSPGIQVTVQNLSPLTMYFFRVR 501 (1381)
T ss_pred cccCccccCCcceecccccceeEEEeecCccccCCCcceEEEEEecCCchhhhheeccCCceEEEeeecccceeEEEEEe
Confidence 224678899999999999999999888777777776543321 114678899999999999999
Q ss_pred EEcCCCCCCCCCCcceeeccCCCCCCCCcccccccccceeeeEEEEecc------ccCcEEEEEEeeecCCCCCCCCCCc
Q psy8771 356 AQSPRGEGATTPPIPVRTKQYGKTPGFGEQAAKHHRRIGLVETYSLTGL------YPNTLYYIWLAAQSPRGEGATTPPI 429 (904)
Q Consensus 356 a~~~~g~~~~s~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~y~~~~~~~~~~g~~~~~~~~ 429 (904)
|.|..|.+.++.++.+.+...++.. +.... .......+.+- .+...|.+.+.-.+.
T Consensus 502 A~n~~g~g~sS~pLkV~t~pEgp~~-~~a~a-------ts~~ti~v~WepP~~~n~~I~~yk~~ys~~~~---------- 563 (1381)
T KOG4221|consen 502 AKNEAGSGESSAPLKVTTQPEGPVQ-LQAYA-------TSPTTILVTWEPPPFGNGPITGYKLFYSEDDT---------- 563 (1381)
T ss_pred ccCcccCCccCCceEEecCCCCCcc-ccccc-------cCcceEEEEecCCCCCCCCceEEEEEEEcCCC----------
Confidence 9999999999999999987653222 11000 00111111111 233455555443211
Q ss_pred ceEeeccCCCCceeeeeccCCeEEEEEEEEeeCCCCCCCCCCceeeecCCCCCCCCCCeEEEecCCceEEEEecCCC--C
Q psy8771 430 PVRTKQYGKTPGFGEQALYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPE--T 507 (904)
Q Consensus 430 ~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~~~~g~~~~s~~~~~~t~~~~p~~~p~~l~v~~~~~~~~~l~W~~p~--~ 507 (904)
...........+++|.||++.|+|.|+|.|+|..|.|..|..+.+.|..+.|..||.||++...++++|+|+|.+|. .
T Consensus 564 ~~~~~~~~n~~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~~i~V~Tlsd~PsaPP~Nl~lev~sStsVrVsW~pP~~~t 643 (1381)
T KOG4221|consen 564 GKELRVENNATEYTINGLEKYTEYSIRVVAYNSAGSGVSSADITVRTLSDVPSAPPQNLSLEVVSSTSVRVSWLPPPSET 643 (1381)
T ss_pred CceEEEecCccEEEeecCCCccceEEEEEEecCCCCCCCCCceEEEeccCCCCCCCcceEEEecCCCeEEEEccCCCccc
Confidence 11333445678899999999999999999999999999999999999999999999999999999999999999964 3
Q ss_pred CCCceeeEEEEEEeCCCCCCcceEEEeecCceEEEEcCCCCCCeEEEEEEEEeCCCCCCCCCcEEEecCCCC-----CCC
Q psy8771 508 PNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGV-----PSQ 582 (904)
Q Consensus 508 ~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~~V~a~~~~g~~~~S~~~~~~t~~~~-----p~~ 582 (904)
.+|.+.+|+|+|+.........|. ...++.+.+.+.+|+|++.|.|+|.|.+..|.|+.|++..+.|+... |.+
T Consensus 644 ~ng~itgYkIRy~~~~~~~~~~~t-~v~~n~~~~l~~~Lep~T~Y~vrIsa~t~nGtGpaS~w~~aeT~~~d~~e~vp~~ 722 (1381)
T KOG4221|consen 644 QNGQITGYKIRYRKLSREDEVNET-VVKGNTTQYLFNGLEPNTQYRVRISAMTVNGTGPASEWVSAETPESDLDERVPGK 722 (1381)
T ss_pred ccceEEEEEEEecccCccccccee-ecccchhhhHhhcCCCCceEEEEEEEeccCCCCCcccceeccCccccccccCCCC
Confidence 568999999999977644333332 22247788999999999999999999999999999999999987643 334
Q ss_pred CCCceEEecCCCeEEEEEeCCCCCCCCceEEEEEeccCCCCCcceEEEeeccceEEEeccCCCCCCCceeeEEEEEEeCC
Q psy8771 583 PRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTY 662 (904)
Q Consensus 583 p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~p~~l~~~~~~~~~~~l~w~~~~~~~~~~~~y~v~~~~~~ 662 (904)
|..|.+.. ..++|.++|.++.+ .+-.+.+|+|.|+...
T Consensus 723 ps~l~~~~-g~~si~vsW~Pp~~-----------------------------------------~~~~vrgY~ig~r~g~ 760 (1381)
T KOG4221|consen 723 PSELHVHP-GSNSIVVSWTPPPH-----------------------------------------PNIVVRGYKIGYRPGS 760 (1381)
T ss_pred Cceeeecc-CceeEEEEeCCCCC-----------------------------------------hhhhhcceEEeeeccc
Confidence 55555544 67789999999876 4456778888885443
Q ss_pred ccc--cceEEecccceEEEeCCCCCcEEEEEEEEEcCCCCCCCCC-CeeEEecCC------CCCCCCCCcEEEecCCCEE
Q psy8771 663 AKA--KHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTP-PIPVRTKQY------VPGAPPQNVSCEPLSSTSI 733 (904)
Q Consensus 663 ~~~--~~~~~~~~~~~~~l~~L~p~t~Y~v~V~a~~~~G~~~~s~-~~~~~t~~~------~p~~~P~~l~~~~~~~~~v 733 (904)
+.. ...........|.|..|.++..|.|+++|+|..|.|.+.. .+.+++... .|..+|..+++...+.++|
T Consensus 761 ~~p~~~tIrl~~~~s~y~l~~Le~~~~YvVkL~AfNn~gdG~p~y~~~~tR~~~~~~~~v~tp~~ppvgv~A~~~S~tsI 840 (1381)
T KOG4221|consen 761 GIPDTGTIRLDEKVSYYNLEQLEPNRDYVVKLRAFNNHGDGNPIYESVKTRSATDPTSPVDTPMLPPVGVRANALSSTSI 840 (1381)
T ss_pred CCCCCccEEecceeeEEEEEecccCceEEEEEEEeccCCCCcceeeeeeeccCCCcCCcCCCCCCCcccccccccccceE
Confidence 332 2445556678999999999999999999999999997642 233332111 2555778888888999999
Q ss_pred EEEecCCCCCCCCccEEEEEEEEEEccCCCCccEEEEecCcceEEecCCCCCceEEEEEEEee-CCCCCCCCCcEEeecC
Q psy8771 734 RISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFVLDELKKWTEYRIWVLAGT-SIGDGPSSYPITIRTH 812 (904)
Q Consensus 734 ~l~W~~~~~~~~~g~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~-~~g~g~~s~~~~~~t~ 812 (904)
.+.|..-. +. -.....|.|.|...+-.....-+.......++.+.+|+|.+.|+|.|.++- ....|.+|..+..+|.
T Consensus 841 ~v~w~~~~-~~-t~~~~~yTVr~~~~gi~~~~~~~~~~~t~ls~~v~glkpnt~yEfav~~~~~~~r~stwsmsv~~~tl 918 (1381)
T KOG4221|consen 841 RVTWADNK-DQ-TTDNRIYTVRWSLTGIRNGTLYRYDNSTDLSYLVGGLKPNTPYEFAVMVVKRNRRESTWSMSVENRTL 918 (1381)
T ss_pred EEEEecCC-Cc-cccceEEEEEEeecccccceeEEEecccccceeccCcCcCChhhhhhhhhhccCcCCcccceeeeeec
Confidence 99999731 12 335788999998544222222233333888999999999999999999887 4557888999999998
Q ss_pred CCCCCC------------CccCCcceeeCCCCCceeeeeeeecCC--------ceEEecCCCeeEEEEcCCCCCcEEEEE
Q psy8771 813 EDDPSE------------VCPTQNDFRKNKKTNGSNFKGGYLNDP--------MRFDVSDGGALELNVTGLQPDTIYTIQ 872 (904)
Q Consensus 813 ~~~P~~------------v~~~~~~W~~p~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~i~~L~p~t~Y~~~ 872 (904)
+..|.. ...+.+.|.+|...||.|..|.+.+.. .......+....+.+.+|.+++.|.|+
T Consensus 919 e~~P~sPP~d~tv~p~e~P~~v~v~WqPp~e~nG~I~~Yii~Ys~~~n~~~~dWt~~t~~g~~L~~~v~~l~p~t~yffk 998 (1381)
T KOG4221|consen 919 ELVPSSPPRDLTVQPDEKPTTVIVHWQPPTEPNGEITEYIIYYSTDGNTPEHDWTIETTAGAELSHQVPNLDPDTGYFFK 998 (1381)
T ss_pred ccCCCCCChhceecccCCCCccccccCCCcCCCCceeeEEEEEecCCCCchhhceeeecccchhhhccCCCCCCCceEEE
Confidence 876632 122334999999999998876654321 112235677889999999999999999
Q ss_pred EEEEecCCCCCCCCceEEecCCC
Q psy8771 873 VAALTRKGDGDRSKPETIKTPGG 895 (904)
Q Consensus 873 v~a~n~~G~g~~s~~~~~~t~~~ 895 (904)
|+|.|..|.|+.|..+.+.|...
T Consensus 999 iQAr~~kG~gp~s~~v~y~t~~~ 1021 (1381)
T KOG4221|consen 999 IQARNEKGPGPFSSPVLYETSKA 1021 (1381)
T ss_pred EEeeccCCCCccccceeeecccc
Confidence 99999999999999999888765
No 2
>KOG4221|consensus
Probab=100.00 E-value=2.5e-56 Score=483.26 Aligned_cols=746 Identities=23% Similarity=0.356 Sum_probs=543.9
Q ss_pred Ccceeeecc------ceEEEEecCCCCCcceeeEeeCCC------CCCCCcEEEeccCCceEEEEeCCCCC---------
Q psy8771 2 DTRCYVESP------EEVFIILCPLPPLIPGYILVTEPG------TAPRDVQVRPLSSSTMVIQWDEPETP--------- 60 (904)
Q Consensus 2 ~~~~~~~~~------~~~~~~~~~~~p~~~~~~~~~~p~------~~p~~l~~~~~~~~s~~v~W~~~~~~--------- 60 (904)
-|||+|++. ++....+-..+=..+..+-...|. +.+..|.|..-+-+.+.|.|.+....
T Consensus 207 ~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~riv 286 (1381)
T KOG4221|consen 207 EYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDSYRIV 286 (1381)
T ss_pred eEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecceEEE
Confidence 379999875 333333333222223322223332 45677888888999999999986322
Q ss_pred ---CCceecccccccccceEEEEeeeccCCeeeeeeeeccCCCCCCCCeEEcCCCCceEEecCCCeEEEEEEccCCCCeE
Q psy8771 61 ---NGQITHPPTRAARSHARLAAQSVLRRGRLAHAVRQVADPVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFV 137 (904)
Q Consensus 61 ---~g~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~~~~~~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i 137 (904)
++.++....+..+.....|..++......+.+.+.| ..||.|+..|.+ +.+.++.++.|+|.+.|.|.|.+
T Consensus 287 l~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V-----~a~P~~~~~p~~-l~A~e~~die~ec~~~g~p~p~v 360 (1381)
T KOG4221|consen 287 LVGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTV-----LAPPGFTKAPTT-LVAHESMDIEFECPVSGKPIPTV 360 (1381)
T ss_pred EecccceEEeccccccCceEEEEecCCCcccccceEEEE-----EcCCCCCCCCcc-eeeeeccceeEeCCCCCCCcceE
Confidence 223444445555555555655553333344445554 678999999999 99999999999999999999999
Q ss_pred EEeeCCccccCCCCceee-cceEEEEeee--cCCeEEEEEEEecCcceEEEEEEEEEeecCC--CCCCCCCCcceEEEee
Q psy8771 138 KWRKGQNIELTPDDKLPV-GRNVLTLDRV--TESENYTCIAASVLGVIETSTIVKVQCKYAP--LLTLPVAPLDVKISEV 212 (904)
Q Consensus 138 ~W~k~~~~~~~~~~~~~~-~~~~l~i~~l--~d~g~Y~c~a~n~~g~~~~~~~l~v~~~~~~--~~~~P~~p~~l~~~~~ 212 (904)
.|+|+ |..+..++++++ .++.|+|..+ .|.|.|+|.++|..|...+.+.|.+..+.+. ..-.|.+|..+.+...
T Consensus 361 ~w~kN-gd~~ipsdy~ki~~~~~lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~~~~s~~~~sap~~lv~~~~ 439 (1381)
T KOG4221|consen 361 RWYKN-GDRIIPSDYFKIVGGGNLRILGIVKSDEGFYQCVAENDAGSAQAAAQLEVVPQPASASSDLLPSAPRDLVANLV 439 (1381)
T ss_pred EEEec-CcccCcccceEecCCCCcEEEEEecccchhhhhhhccCcccccchhhheeccCCcccccCccccCCcceecccc
Confidence 99999 555555777776 4445888887 7999999999999999999999976622211 1134668888988889
Q ss_pred cCCeEEEEEeCC---CccceEEEEEEEeCCCCCCeEEeecceeceEEEcCCCCCCeEEEEEEEEcCCCCCCCCCCeEEec
Q psy8771 213 TATSVRLDWTYP---SETLLYYVIQYKPKAANTPYSEISGIITTYYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITT 289 (904)
Q Consensus 213 ~~~sv~l~W~~~---~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~s~~s~~~~~~t 289 (904)
+...+.|+|..| ++++..|.+.|........-...........++.+|+|.+.|.|+|.|.|..|.+.++.++.+.+
T Consensus 440 ~srfi~~tw~~p~~~~g~i~~~~v~~~~~~~~rer~~~tss~g~~~tv~nl~p~t~Y~~rv~A~n~~g~g~sS~pLkV~t 519 (1381)
T KOG4221|consen 440 SSRFIQLTWRPPAQISGNISTYTVFYKVEGDVRERLQNTSSPGIQVTVQNLSPLTMYFFRVRAKNEAGSGESSAPLKVTT 519 (1381)
T ss_pred cceeEEEeecCccccCCCcceEEEEEecCCchhhhheeccCCceEEEeeecccceeEEEEEeccCcccCCccCCceEEec
Confidence 999999999987 78899999999876433222222222227889999999999999999999999999999999887
Q ss_pred CCCCCCCCCCceEecccCCCeeEEEecCCCCCCceeeEEEEEee-----------ceeEEEEEcCCCCCcEEEEEEEEEc
Q psy8771 290 GETEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITAKHHRRI-----------GLVETYSLTGLYPNTLYYIWLAAQS 358 (904)
Q Consensus 290 ~~~~p~~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~~~~~~~~~-----------~~~~~~~~~~L~~~~~Y~v~v~a~~ 358 (904)
.+. +|..+++...+..++.+.|++|...++.+++|..... .+...|+|.+|.+.+.|.|+|.|.|
T Consensus 520 ~pE----gp~~~~a~ats~~ti~v~WepP~~~n~~I~~yk~~ys~~~~~~~~~~~~n~~e~ti~gL~k~TeY~~~vvA~N 595 (1381)
T KOG4221|consen 520 QPE----GPVQLQAYATSPTTILVTWEPPPFGNGPITGYKLFYSEDDTGKELRVENNATEYTINGLEKYTEYSIRVVAYN 595 (1381)
T ss_pred CCC----CCccccccccCcceEEEEecCCCCCCCCceEEEEEEEcCCCCceEEEecCccEEEeecCCCccceEEEEEEec
Confidence 654 3444999999999999999999999999998754332 2345799999999999999999999
Q ss_pred CCCCCCCCCCcceeeccCCCCCCCCcccccccccceeeeEEEEeccccC--------cEEEEEEeeecCCCCCCCCCCcc
Q psy8771 359 PRGEGATTPPIPVRTKQYGKTPGFGEQAAKHHRRIGLVETYSLTGLYPN--------TLYYIWLAAQSPRGEGATTPPIP 430 (904)
Q Consensus 359 ~~g~~~~s~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~y~~~~~~~~~~g~~~~~~~~~ 430 (904)
..|.+..|..+.|+|....+......... ......+..+....+. ..|.++.......+...
T Consensus 596 ~~G~g~sS~~i~V~Tlsd~PsaPP~Nl~l----ev~sStsVrVsW~pP~~~t~ng~itgYkIRy~~~~~~~~~~------ 665 (1381)
T KOG4221|consen 596 SAGSGVSSADITVRTLSDVPSAPPQNLSL----EVVSSTSVRVSWLPPPSETQNGQITGYKIRYRKLSREDEVN------ 665 (1381)
T ss_pred CCCCCCCCCceEEEeccCCCCCCCcceEE----EecCCCeEEEEccCCCcccccceEEEEEEEecccCcccccc------
Confidence 99999999999999986544333321111 1111122233333222 24555555433332211
Q ss_pred eEeeccCCCCceeeeeccCCeEEEEEEEEeeCCCCCCCCCCceeeecCCCCC----CCCCCeEEEecCCceEEEEecCCC
Q psy8771 431 VRTKQYGKTPGFGEQALYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPG----TAPRDVQVRPLSSSTMVIQWDEPE 506 (904)
Q Consensus 431 ~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~~~~g~~~~s~~~~~~t~~~~p~----~~p~~l~v~~~~~~~~~l~W~~p~ 506 (904)
..-..+....+.+.+|+|++.|.|+|.|.+..|.|+.|.+..+.|....+. .+|..|.+. ...++|.++|.||.
T Consensus 666 -~t~v~~n~~~~l~~~Lep~T~Y~vrIsa~t~nGtGpaS~w~~aeT~~~d~~e~vp~~ps~l~~~-~g~~si~vsW~Pp~ 743 (1381)
T KOG4221|consen 666 -ETVVKGNTTQYLFNGLEPNTQYRVRISAMTVNGTGPASEWVSAETPESDLDERVPGKPSELHVH-PGSNSIVVSWTPPP 743 (1381)
T ss_pred -eeecccchhhhHhhcCCCCceEEEEEEEeccCCCCCcccceeccCccccccccCCCCCceeeec-cCceeEEEEeCCCC
Confidence 112223566678899999999999999999999999999999888654332 355555543 45689999999998
Q ss_pred CCCCceeeEEEEEEeCCCCCCcceEEEeecCceEEEEcCCCCCCeEEEEEEEEeCCCCCCCCCc-EEEecCCC-------
Q psy8771 507 TPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVGPGPLSAP-VLVKTQQG------- 578 (904)
Q Consensus 507 ~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~~V~a~~~~g~~~~S~~-~~~~t~~~------- 578 (904)
+.+-.+.+|+|.|+.....+. .-........+.|.|..|+++..|.++++|+|..|.|..... ..++....
T Consensus 744 ~~~~~vrgY~ig~r~g~~~p~-~~tIrl~~~~s~y~l~~Le~~~~YvVkL~AfNn~gdG~p~y~~~~tR~~~~~~~~v~t 822 (1381)
T KOG4221|consen 744 HPNIVVRGYKIGYRPGSGIPD-TGTIRLDEKVSYYNLEQLEPNRDYVVKLRAFNNHGDGNPIYESVKTRSATDPTSPVDT 822 (1381)
T ss_pred ChhhhhcceEEeeecccCCCC-CccEEecceeeEEEEEecccCceEEEEEEEeccCCCCcceeeeeeeccCCCcCCcCCC
Confidence 877789999999976544331 122344466788999999999999999999999999865432 33332211
Q ss_pred CCCCCCCceEEecCCCeEEEEEeCCCCCCCCceEEEEEeccCCCCCcceEEEeeccceEEEeccCCCCCCCceeeEEEEE
Q psy8771 579 VPSQPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYW 658 (904)
Q Consensus 579 ~p~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~p~~l~~~~~~~~~~~l~w~~~~~~~~~~~~y~v~~ 658 (904)
+..+|..++....+.++|.+.|..-.+ .-.....|.|+|
T Consensus 823 p~~ppvgv~A~~~S~tsI~v~w~~~~~-----------------------------------------~t~~~~~yTVr~ 861 (1381)
T KOG4221|consen 823 PMLPPVGVRANALSSTSIRVTWADNKD-----------------------------------------QTTDNRIYTVRW 861 (1381)
T ss_pred CCCCcccccccccccceEEEEEecCCC-----------------------------------------ccccceEEEEEE
Confidence 223556677777777888888876321 112456777777
Q ss_pred EeCCcc--ccceEEecccceEEEeCCCCCcEEEEEEEEEc-CCCCCCCCCCeeEEecCCCCCCCCCCcEEEecC-CCEEE
Q psy8771 659 NDTYAK--AKHHRRIGLVETYSLTGLYPNTLYYIWLAAQS-PRGEGATTPPIPVRTKQYVPGAPPQNVSCEPLS-STSIR 734 (904)
Q Consensus 659 ~~~~~~--~~~~~~~~~~~~~~l~~L~p~t~Y~v~V~a~~-~~G~~~~s~~~~~~t~~~~p~~~P~~l~~~~~~-~~~v~ 734 (904)
...+-. ...........++.+.+|+|++.|+|-|.++- ..-.|.+|..+..+|.+.+|..||.++.+.... ++++.
T Consensus 862 ~~~gi~~~~~~~~~~~t~ls~~v~glkpnt~yEfav~~~~~~~r~stwsmsv~~~tle~~P~sPP~d~tv~p~e~P~~v~ 941 (1381)
T KOG4221|consen 862 SLTGIRNGTLYRYDNSTDLSYLVGGLKPNTPYEFAVMVVKRNRRESTWSMSVENRTLELVPSSPPRDLTVQPDEKPTTVI 941 (1381)
T ss_pred eecccccceeEEEecccccceeccCcCcCChhhhhhhhhhccCcCCcccceeeeeecccCCCCCChhceecccCCCCccc
Confidence 633222 22223344567899999999999999999988 444577888899999999999999999997554 79999
Q ss_pred EEecCCCCCCCCccEEEEEEEEEEccCCC-CccEEEEec-CcceEEecCCCCCceEEEEEEEeeCCCCCCCCCcEEeecC
Q psy8771 735 ISWEPPPVERSNGHIVYYKLQFVETGRSD-SEASIVTLK-NQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTH 812 (904)
Q Consensus 735 l~W~~~~~~~~~g~~~~Y~v~~~~~~~~~-~~~~~~~~~-~~~~~~i~~L~p~t~Y~~~V~a~~~~g~g~~s~~~~~~t~ 812 (904)
+.|.+| .+.||.|+.|.|+|....... ..+...... +...+.+.+|.+++.|.|+|+|.+..|.|++|.++.++|.
T Consensus 942 v~WqPp--~e~nG~I~~Yii~Ys~~~n~~~~dWt~~t~~g~~L~~~v~~l~p~t~yffkiQAr~~kG~gp~s~~v~y~t~ 1019 (1381)
T KOG4221|consen 942 VHWQPP--TEPNGEITEYIIYYSTDGNTPEHDWTIETTAGAELSHQVPNLDPDTGYFFKIQARNEKGPGPFSSPVLYETS 1019 (1381)
T ss_pred cccCCC--cCCCCceeeEEEEEecCCCCchhhceeeecccchhhhccCCCCCCCceEEEEEeeccCCCCccccceeeecc
Confidence 999999 689999999999999876432 233444454 8888999999999999999999999999999999988876
Q ss_pred CC
Q psy8771 813 ED 814 (904)
Q Consensus 813 ~~ 814 (904)
..
T Consensus 1020 ~~ 1021 (1381)
T KOG4221|consen 1020 KA 1021 (1381)
T ss_pred cc
Confidence 44
No 3
>KOG3513|consensus
Probab=100.00 E-value=2.3e-54 Score=472.89 Aligned_cols=739 Identities=22% Similarity=0.310 Sum_probs=507.9
Q ss_pred CcceeeeccceEEEEecCCCCCcc--------------eeeE--eeCCCCCCCCcEEEeccCCceEEEEeCCCCC-----
Q psy8771 2 DTRCYVESPEEVFIILCPLPPLIP--------------GYIL--VTEPGTAPRDVQVRPLSSSTMVIQWDEPETP----- 60 (904)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~p~~~--------------~~~~--~~~p~~~p~~l~~~~~~~~s~~v~W~~~~~~----- 60 (904)
+|.|.+.++.+..+++-+.-|.+. .... ..+-.+....|.|-..+.+.++|.|.+....
T Consensus 207 ~Y~C~a~~~~~~~~v~~~~~~L~~~~~~~~~~~~P~i~~~~p~~~~a~~G~~v~LECfA~G~P~P~i~W~k~~g~~~~~r 286 (1051)
T KOG3513|consen 207 NYICSATFPSTQTIVQGPPFPLIVRSNNVMREYAPKILVPFPETETALKGQSVKLECFALGNPTPQIKWRKVDGKPPPRR 286 (1051)
T ss_pred ceEEEEEchhhcccccCCceeEEEcccccccccCCccccCCCCcccccCCCeEEEEEEecCCCCCcEEEEeCCCCCCCcc
Confidence 789999999998888777444331 1111 1111246677889999999999999988652
Q ss_pred -----CCceec-ccccccccceEEEEeeeccCCeeeeeeeeccCCCCCCCCeEEcCCCCceEEecCCCeEEEEEEccCCC
Q psy8771 61 -----NGQITH-PPTRAARSHARLAAQSVLRRGRLAHAVRQVADPVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPM 134 (904)
Q Consensus 61 -----~g~i~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~~~~~~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~ 134 (904)
-|.++. -.....|.....|...+..+-......+.+ ..+|.|+..+++ ..+..|+++.|+|.|.|.|.
T Consensus 287 ~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v-----~a~P~w~~~~~d-~~~~~gs~v~~eC~a~g~P~ 360 (1051)
T KOG3513|consen 287 ATYSNYGKVLKIPNVQYEDAGEYECIAENSRGSATHSGHVTV-----YAPPYWLQKPQD-TEADTGSNVTLECKASGKPN 360 (1051)
T ss_pred eeeeccccEEEecccCcCCCeEEEEEEecccccceeeEEEEE-----ecCchhhcccce-eEecCCCCeEEEEEecCCCC
Confidence 122221 112222444444555554443333444443 789999999999 99999999999999999999
Q ss_pred CeEEEeeCCccccCCCCc---eeecceEEEEeee--cCCeEEEEEEEecCcceEEEEEEEEEeecCCCCCCCCCCcceEE
Q psy8771 135 PFVKWRKGQNIELTPDDK---LPVGRNVLTLDRV--TESENYTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKI 209 (904)
Q Consensus 135 p~i~W~k~~~~~~~~~~~---~~~~~~~l~i~~l--~d~g~Y~c~a~n~~g~~~~~~~l~v~~~~~~~~~~P~~p~~l~~ 209 (904)
|.|+|+|| |..+....| +.+.++.|.|.+| +|+|+|+|.|.|.+|...+++.|.|.. ..+..+..|.+-.+
T Consensus 361 p~v~WlkN-g~pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a---~~P~f~~~p~~~~~ 436 (1051)
T KOG3513|consen 361 PTVKWLKN-GEPLEPAERDPRYKIDDGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLA---SAPVFPLNPVERKV 436 (1051)
T ss_pred CceEEeeC-CeecCccCCCcceEEeCCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEc---cCCCCCCCccceEE
Confidence 99999999 888877666 8899999999999 699999999999999999999999992 12233334444445
Q ss_pred EeecCCeEEEEEeCCCccceEEEEEEEeCCCC-CCeEEeecceeceEEEcCCCCCCeEEEEEEEEcCCCCCCCCCCeEEe
Q psy8771 210 SEVTATSVRLDWTYPSETLLYYVIQYKPKAAN-TPYSEISGIITTYYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVIT 288 (904)
Q Consensus 210 ~~~~~~sv~l~W~~~~~~~~~y~v~~~~~~~~-~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~s~~s~~~~~~ 288 (904)
..+-...+.|.+++.+++-. .+.|...+.. ..-.......+..|.|.+++..+.+.|+|.|.|..|.......+.+.
T Consensus 437 ~a~~g~~v~i~C~~~asP~p--~~~W~k~~~~~~~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vk 514 (1051)
T KOG3513|consen 437 MAVVGGTVTIDCKPFASPKP--KVSWLKGGEKLLQSGRIRILEDGTLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVK 514 (1051)
T ss_pred EEEeCCeEEEeeccCCCCcc--eEEEEcCCcccccCceEEECCCCcEEecccCcccCcEEEEEEEcccCccceEEEEEEe
Confidence 55667788888887755544 4556554331 01111222345789999999999999999999999987644444443
Q ss_pred cCCCCCCCCCCceEecccCCCeeEEEecCCCCCCceeeEEEEEeeceeEEEEEcCCCCCcEEEEEEEEEcCCCCCCCCCC
Q psy8771 289 TGETEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPP 368 (904)
Q Consensus 289 t~~~~p~~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~Y~v~v~a~~~~g~~~~s~~ 368 (904)
-... ...+|.+..+.. ..++.|.++...++.-.+...- ...+ ..+.-...+..|..
T Consensus 515 d~tr-i~~~P~~~~v~~--g~~v~l~Ce~shD~~ld~~f~W-~~nG----~~id~~~~~~~~~~---------------- 570 (1051)
T KOG3513|consen 515 DATR-ITLAPSNTDVKV--GESVTLTCEASHDPSLDITFTW-KKNG----RPIDFNPDGDHFEI---------------- 570 (1051)
T ss_pred cCce-EEeccchhhhcc--CceEEEEeecccCCCcceEEEE-EECC----EEhhccCCCCceEE----------------
Confidence 2211 112333333222 3456666665433322221100 0000 00000011111110
Q ss_pred cceeeccCCCCCCCCcccccccccceeeeEEEEeccccCcEEEEEEeeecCCCCCCCCCCcceEeeccCCCCceeeeecc
Q psy8771 369 IPVRTKQYGKTPGFGEQAAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYGKTPGFGEQALY 448 (904)
Q Consensus 369 ~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~ 448 (904)
.+... .......-..|+
T Consensus 571 ---------------------------------~~~~~------------------------------~g~L~i~nv~l~ 587 (1051)
T KOG3513|consen 571 ---------------------------------NDGSD------------------------------SGRLTIANVSLE 587 (1051)
T ss_pred ---------------------------------eCCcC------------------------------ccceEEEeeccc
Confidence 00000 000111224577
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCceeeecCCCCCCCCCCeEEEecCCceEEEEecCCCCCCCceeeEEEEEEeCCCCCCc
Q psy8771 449 PNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMS 528 (904)
Q Consensus 449 p~~~Y~~~v~a~~~~g~~~~s~~~~~~t~~~~p~~~p~~l~v~~~~~~~~~l~W~~p~~~~~~i~~Y~v~~~~~~~~~~~ 528 (904)
....|.+.+.+..+.-.+ ...+.++ .||.||.+|.+...+.++++|+|.+..+++++|..|.|+.+..-. .
T Consensus 588 ~~G~Y~C~aqT~~Ds~s~--~A~l~V~----gpPgpP~~v~~~~i~~t~~~lsW~~g~dn~SpI~~Y~iq~rt~~~---~ 658 (1051)
T KOG3513|consen 588 DSGKYTCVAQTALDSASA--RADLLVR----GPPGPPPDVHVDDISDTTARLSWSPGSDNNSPIEKYTIQFRTPFP---G 658 (1051)
T ss_pred cCceEEEEEEEeecchhc--ccceEEe----cCCCCCCceeEeeeccceEEEEeecCCCCCCCceEEeEEecCCCC---C
Confidence 888999998884432221 1123333 456788899999999999999999988888999999999998743 5
Q ss_pred ceEEEee--cCc---eEEEEcCCCCCCeEEEEEEEEeCCCCCCCCCcE-EEecCCCCCC-CCCCceEEecCCCeEEEEEe
Q psy8771 529 AWETQVV--DNN---QLTTISDLTPHTIYTIRVQAFTSVGPGPLSAPV-LVKTQQGVPS-QPRDLRAVDIQETAVTLAWS 601 (904)
Q Consensus 529 ~~~~~~~--~~~---~~~~~~~L~p~t~Y~~~V~a~~~~g~~~~S~~~-~~~t~~~~p~-~p~~~~~~~~~~~~~~l~W~ 601 (904)
.|+.+.. ... .+.++.+|.|...|+|||+|+|..|.|++|.+. ..+|.+++|. +|.++.......+.+.|.|+
T Consensus 659 ~W~~v~~vp~~~~~~~sa~vv~L~Pwv~YeFRV~AvN~iG~gePS~pS~~~rT~ea~P~~~P~nv~g~g~~~~eLvItW~ 738 (1051)
T KOG3513|consen 659 KWKAVTTVPGNITGDESATVVNLSPWVEYEFRVVAVNSIGIGEPSPPSEKVRTPEAAPSVNPSNVKGGGGSPTELVITWE 738 (1051)
T ss_pred cceEeeECCCcccCccceeEEccCCCcceEEEEEEEcccccCCCCCCccceecCCCCCccCCccccccCCCCceEEEEec
Confidence 5665543 111 357899999999999999999999999998875 6788888885 89999999988999999999
Q ss_pred CCCCCCCCceEEEEEeccCCCCCcceEEEeeccceEEEeccCCCCCCCceeeEEEEEEeCCcc-ccceEEecc--cceEE
Q psy8771 602 KPTHSGENIISYELYWNDTYAKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAK-AKHHRRIGL--VETYS 678 (904)
Q Consensus 602 ~~~~~~~~~~~y~v~~~~~~~~p~~l~~~~~~~~~~~l~w~~~~~~~~~~~~y~v~~~~~~~~-~~~~~~~~~--~~~~~ 678 (904)
+... ...+|+-.+|+|.|+..+.. .|......+ ...+.
T Consensus 739 Pl~~---------------------------------------~~qNG~gfgY~Vswr~~g~~~~W~~~~v~~~d~~~~V 779 (1051)
T KOG3513|consen 739 PLPE---------------------------------------EEQNGPGFGYRVSWRPQGADKEWKEVIVSNQDQPRYV 779 (1051)
T ss_pred cCCH---------------------------------------HHccCCCceEEEEEEeCCCCcccceeEecccCCceEE
Confidence 8742 23578899999999999988 665444433 23444
Q ss_pred E--eCCCCCcEEEEEEEEEcCCCCCCCCCCeeEEecCCCCCCCCCCcEEEecCCCEEEEEecCCCCCCCCccEEEEEEEE
Q psy8771 679 L--TGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQF 756 (904)
Q Consensus 679 l--~~L~p~t~Y~v~V~a~~~~G~~~~s~~~~~~t~~~~p~~~P~~l~~~~~~~~~v~l~W~~~~~~~~~g~~~~Y~v~~ 756 (904)
+ ....|.+.|+|+|+|+|..|+|+.|..+.+.+.++.|..+|..+.+...+.+.+.|+|++|. ..||.+++|.|+|
T Consensus 780 ~~~~st~~~tpyevKVqa~N~~GeGp~s~~~v~~S~Ed~P~~ap~~~~~~~~s~s~~~v~W~~~~--~~nG~l~gY~v~Y 857 (1051)
T KOG3513|consen 780 VSNESTEPFTPYEVKVQAINDQGEGPESQVTVGYSGEDEPPVAPTKLSAKPLSSSEVNLSWKPPL--WDNGKLTGYEVKY 857 (1051)
T ss_pred EcCCCCCCcceeEEEEEEecCCCCCCCCceEEEEcCCCCCCCCCccceeecccCceEEEEecCcC--ccCCccceeEEEE
Confidence 4 44667999999999999999999999999999999999999999999999999999999994 6779999999999
Q ss_pred EEccCCCCccEEEEec-CcceEEecCCCCCceEEEEEEEeeCCCCCCCCCcEEeecCCCCCCCC------------ccCC
Q psy8771 757 VETGRSDSEASIVTLK-NQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDPSEV------------CPTQ 823 (904)
Q Consensus 757 ~~~~~~~~~~~~~~~~-~~~~~~i~~L~p~t~Y~~~V~a~~~~g~g~~s~~~~~~t~~~~P~~v------------~~~~ 823 (904)
+.............+. +.++..|.||++.+.|.|.|+|+|++|.|+.|.....+|...+|+.+ ....
T Consensus 858 ~~~~~~~~~~~~~~i~~~~~~~~ltgL~~~T~Y~~~vrA~nsaG~Gp~s~~~~~tt~k~pPs~~~~~p~g~~~~~~~~~~ 937 (1051)
T KOG3513|consen 858 WKINEKEGSLSRVQIAGNRTSWRLTGLEPNTKYRFYVRAYTSAGGGPASSEENVTTKKAPPSQVDIAPPGNFIWKFSASI 937 (1051)
T ss_pred EEcCCCcccccceeecCCcceEeeeCCCCCceEEEEEEEecCCCCCCCccceeccccCCCCcccccCCCcceEEeeeeeE
Confidence 9986543322333444 99999999999999999999999999999999999999999998741 1111
Q ss_pred --cceeeC--C----CCCceeeeeeeecCC--ceEEecCCCeeEEEEcCCCCCcEEEEEEEEEecCCCCCCCCceEEe
Q psy8771 824 --NDFRKN--K----KTNGSNFKGGYLNDP--MRFDVSDGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIK 891 (904)
Q Consensus 824 --~~W~~p--~----~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~a~n~~G~g~~s~~~~~~ 891 (904)
+.|..- . ...||.+.+...... ............-....+ +-.|.++|++....|.|..+......
T Consensus 938 ~~l~w~~v~~~~nes~v~gYkV~~~~~~~~~~~~~~t~~~~~~~~~p~~~--~~~y~i~v~~~~~ggdg~~s~~~~~~ 1013 (1051)
T KOG3513|consen 938 LLLLWLLVSAFENESEVGGYKVLYREDLQNDIEIILTMKLDAEFPEPSDL--DGKYDIKVRGYSPGGDGTISEEISID 1013 (1051)
T ss_pred EEEEEeeEEEEeecccCcceEEEEeecccCCceeEecccccccccCcccc--CCcceeEeccccCCCCCCcCCccccc
Confidence 167621 1 223343333222111 111111111111122333 27999999999999998776665433
No 4
>KOG3513|consensus
Probab=100.00 E-value=1.7e-50 Score=442.70 Aligned_cols=662 Identities=22% Similarity=0.330 Sum_probs=486.4
Q ss_pred CcceeeeccceEEE----EecCCCCCcceeeE-eeCCCCCCCCcEEEeccCCceEEEEeCCCCC-------------CCc
Q psy8771 2 DTRCYVESPEEVFI----ILCPLPPLIPGYIL-VTEPGTAPRDVQVRPLSSSTMVIQWDEPETP-------------NGQ 63 (904)
Q Consensus 2 ~~~~~~~~~~~~~~----~~~~~~p~~~~~~~-~~~p~~~p~~l~~~~~~~~s~~v~W~~~~~~-------------~g~ 63 (904)
.|+|+|++..+... +.-..+|.....+. ..........+.|+..+.+..+++|.+...+ +|.
T Consensus 308 ~Y~C~AeN~~G~~~~~~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g~ 387 (1051)
T KOG3513|consen 308 EYECIAENSRGSATHSGHVTVYAPPYWLQKPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDDGT 387 (1051)
T ss_pred EEEEEEecccccceeeEEEEEecCchhhcccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEeCCE
Confidence 48999999988432 22225665543333 2222347888889999999999999887422 566
Q ss_pred eecccccccccceEEEEeeeccCCeeeeeeeeccCCCCCCCCeEEcCCCC-ceEEecCCCeEEEEEEccCCCCeEEEeeC
Q psy8771 64 ITHPPTRAARSHARLAAQSVLRRGRLAHAVRQVADPVRRVPPQFSIPPPA-LLEVMLDSPLNLSCVAVGSPMPFVKWRKG 142 (904)
Q Consensus 64 i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~~~~~~~~P~~~~~~~~-~~~~~~g~~~~l~C~~~g~p~p~i~W~k~ 142 (904)
|+...+...+.....|...+..+-..+.+.|.|. ..+|.|...|.+ .+.+..|..+.|.|.+.+.|.|.++|.|+
T Consensus 388 L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~----a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~ 463 (1051)
T KOG3513|consen 388 LIISNVQESDSGVYQCIAENKYGTIYANAELKVL----ASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKG 463 (1051)
T ss_pred EEEEecccccCeEEEeeeecccceEeeeeEEEEE----ccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcC
Confidence 6666667777777777777777777788888886 567777777764 37889999999999999999999999999
Q ss_pred CccccCCCCceee-cceEEEEeee--cCCeEEEEEEEecCcceEEEEEEEEEeecCCCCCCCCCCcceEEEeecCCeEEE
Q psy8771 143 QNIELTPDDKLPV-GRNVLTLDRV--TESENYTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISEVTATSVRL 219 (904)
Q Consensus 143 ~~~~~~~~~~~~~-~~~~l~i~~l--~d~g~Y~c~a~n~~g~~~~~~~l~v~~~~~~~~~~P~~p~~l~~~~~~~~sv~l 219 (904)
++ .+..+.|+.+ .+|+|.|.++ +|+|.|+|.|.|.+|.+++.+.|.|.. ++.+.. +|.+..+. ...+++|
T Consensus 464 ~~-~~~~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd--~tri~~--~P~~~~v~--~g~~v~l 536 (1051)
T KOG3513|consen 464 GE-KLLQSGRIRILEDGTLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKD--ATRITL--APSNTDVK--VGESVTL 536 (1051)
T ss_pred Cc-ccccCceEEECCCCcEEecccCcccCcEEEEEEEcccCccceEEEEEEec--CceEEe--ccchhhhc--cCceEEE
Confidence 44 6777788876 8999999999 699999999999999999999999982 222222 45544332 2345555
Q ss_pred EEeCCCccceEEEEEEEeCCC-------CCCeEEeecceeceEEEcCCCCCCeEEEEEEEEcCCCCCCCCCCeEEecCCC
Q psy8771 220 DWTYPSETLLYYVIQYKPKAA-------NTPYSEISGIITTYYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGET 292 (904)
Q Consensus 220 ~W~~~~~~~~~y~v~~~~~~~-------~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~s~~s~~~~~~t~~~ 292 (904)
.++....+...-.+.|..++. +..+....+.+...++|.+++..+.+.|.|+|............+.++.
T Consensus 537 ~Ce~shD~~ld~~f~W~~nG~~id~~~~~~~~~~~~~~~~g~L~i~nv~l~~~G~Y~C~aqT~~Ds~s~~A~l~V~g--- 613 (1051)
T KOG3513|consen 537 TCEASHDPSLDITFTWKKNGRPIDFNPDGDHFEINDGSDSGRLTIANVSLEDSGKYTCVAQTALDSASARADLLVRG--- 613 (1051)
T ss_pred EeecccCCCcceEEEEEECCEEhhccCCCCceEEeCCcCccceEEEeeccccCceEEEEEEEeecchhcccceEEec---
Confidence 555542222222233333221 2233333333336799999999999999999988655443334444443
Q ss_pred CCCCCCCceEecccCCCeeEEEecCCCCCCceeeEEEEEeeceeEEEEEcCCCCCcEEEEEEEEEcCCCCCCCCCCccee
Q psy8771 293 EPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVR 372 (904)
Q Consensus 293 ~p~~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~Y~v~v~a~~~~g~~~~s~~~~~~ 372 (904)
||.||.++.+...+.+++.|+|.+..+.+..|..| .++.+.....+
T Consensus 614 -pPgpP~~v~~~~i~~t~~~lsW~~g~dn~SpI~~Y----------------------~iq~rt~~~~~----------- 659 (1051)
T KOG3513|consen 614 -PPGPPPDVHVDDISDTTARLSWSPGSDNNSPIEKY----------------------TIQFRTPFPGK----------- 659 (1051)
T ss_pred -CCCCCCceeEeeeccceEEEEeecCCCCCCCceEE----------------------eEEecCCCCCc-----------
Confidence 35677799999999999999999988877665543 33222210000
Q ss_pred eccCCCCCCCCcccccccccceeeeEEEEeccccCcEEEEEEeeecCCCCCCCCCCcceEeeccCCCCceeeeeccCCeE
Q psy8771 373 TKQYGKTPGFGEQAAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYGKTPGFGEQALYPNTL 452 (904)
Q Consensus 373 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~ 452 (904)
...+. .+.....+. ...++.+|.|..+
T Consensus 660 ------------------------------------W~~v~----------------~vp~~~~~~-~sa~vv~L~Pwv~ 686 (1051)
T KOG3513|consen 660 ------------------------------------WKAVT----------------TVPGNITGD-ESATVVNLSPWVE 686 (1051)
T ss_pred ------------------------------------ceEee----------------ECCCcccCc-cceeEEccCCCcc
Confidence 00000 001111122 2356889999999
Q ss_pred EEEEEEEeeCCCCCCCCCC-ceeeecCCCCCCCCCCeEEEecCCceEEEEecC--CCCCCCceeeEEEEEEeCCCCCCcc
Q psy8771 453 YYIWLAAQSPRGEGATTPP-IPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDE--PETPNGQITGYKVYYTQDQSLPMSA 529 (904)
Q Consensus 453 Y~~~v~a~~~~g~~~~s~~-~~~~t~~~~p~~~p~~l~v~~~~~~~~~l~W~~--p~~~~~~i~~Y~v~~~~~~~~~~~~ 529 (904)
|+|||+|.|..|.+..|.+ ..++|.+++|...|.++.......+.|.|+|++ +...+|+-.+|+|.|+..+.. ..
T Consensus 687 YeFRV~AvN~iG~gePS~pS~~~rT~ea~P~~~P~nv~g~g~~~~eLvItW~Pl~~~~qNG~gfgY~Vswr~~g~~--~~ 764 (1051)
T KOG3513|consen 687 YEFRVVAVNSIGIGEPSPPSEKVRTPEAAPSVNPSNVKGGGGSPTELVITWEPLPEEEQNGPGFGYRVSWRPQGAD--KE 764 (1051)
T ss_pred eEEEEEEEcccccCCCCCCccceecCCCCCccCCccccccCCCCceEEEEeccCCHHHccCCCceEEEEEEeCCCC--cc
Confidence 9999999999999998877 678899999999999999999999999999999 345678899999999998754 36
Q ss_pred eEEEeecC--ceEEEEc--CCCCCCeEEEEEEEEeCCCCCCCCCcEEEecCCCCC-CCCCCceEEecCCCeEEEEEeCCC
Q psy8771 530 WETQVVDN--NQLTTIS--DLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVP-SQPRDLRAVDIQETAVTLAWSKPT 604 (904)
Q Consensus 530 ~~~~~~~~--~~~~~~~--~L~p~t~Y~~~V~a~~~~g~~~~S~~~~~~t~~~~p-~~p~~~~~~~~~~~~~~l~W~~~~ 604 (904)
|......+ ...+.+. -..|.+.|.++|+|+|..|.|+.|..+.+....+.| .+|..+.+...+.+.+.|+|+++.
T Consensus 765 W~~~~v~~~d~~~~V~~~~st~~~tpyevKVqa~N~~GeGp~s~~~v~~S~Ed~P~~ap~~~~~~~~s~s~~~v~W~~~~ 844 (1051)
T KOG3513|consen 765 WKEVIVSNQDQPRYVVSNESTEPFTPYEVKVQAINDQGEGPESQVTVGYSGEDEPPVAPTKLSAKPLSSSEVNLSWKPPL 844 (1051)
T ss_pred cceeEecccCCceEEEcCCCCCCcceeEEEEEEecCCCCCCCCceEEEEcCCCCCCCCCccceeecccCceEEEEecCcC
Confidence 77766644 2445554 456799999999999999999999999998888777 489999999999999999999987
Q ss_pred CCCCCceEEEEEeccCCCCCcceEEEeeccceEEEeccCCCCCCCceeeEEEEEEeCCcccc---ceEEecccceEEEeC
Q psy8771 605 HSGENIISYELYWNDTYAKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAK---HHRRIGLVETYSLTG 681 (904)
Q Consensus 605 ~~~~~~~~y~v~~~~~~~~p~~l~~~~~~~~~~~l~w~~~~~~~~~~~~y~v~~~~~~~~~~---~~~~~~~~~~~~l~~ 681 (904)
. .+|.+.+|.|+|+..+.... .....++.++..|.|
T Consensus 845 ~-----------------------------------------~nG~l~gY~v~Y~~~~~~~~~~~~~~i~~~~~~~~ltg 883 (1051)
T KOG3513|consen 845 W-----------------------------------------DNGKLTGYEVKYWKINEKEGSLSRVQIAGNRTSWRLTG 883 (1051)
T ss_pred c-----------------------------------------cCCccceeEEEEEEcCCCcccccceeecCCcceEeeeC
Confidence 5 56788999999998876632 333446778999999
Q ss_pred CCCCcEEEEEEEEEcCCCCCCCCCCeeEEecCCCCCC----CCCCcEEEecCCCEEEEEecCCCCCCCCccEEEEEEEEE
Q psy8771 682 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGA----PPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFV 757 (904)
Q Consensus 682 L~p~t~Y~v~V~a~~~~G~~~~s~~~~~~t~~~~p~~----~P~~l~~~~~~~~~v~l~W~~~~~~~~~g~~~~Y~v~~~ 757 (904)
|++.+.|.|.|+|+|.+|.|+.|.....+|...+|.. +|. ..+.......+.|.|....+-.....+.+|.|.++
T Consensus 884 L~~~T~Y~~~vrA~nsaG~Gp~s~~~~~tt~k~pPs~~~~~p~g-~~~~~~~~~~~~l~w~~v~~~~nes~v~gYkV~~~ 962 (1051)
T KOG3513|consen 884 LEPNTKYRFYVRAYTSAGGGPASSEENVTTKKAPPSQVDIAPPG-NFIWKFSASILLLLWLLVSAFENESEVGGYKVLYR 962 (1051)
T ss_pred CCCCceEEEEEEEecCCCCCCCccceeccccCCCCcccccCCCc-ceEEeeeeeEEEEEEeeEEEEeecccCcceEEEEe
Confidence 9999999999999999999999999999999988886 444 45556678899999998866555556899999999
Q ss_pred EccCCCCccEEEEecCcceEEecCCCCCceEEEEEEEeeCCCCCCCCCcEEee
Q psy8771 758 ETGRSDSEASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIR 810 (904)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~g~~s~~~~~~ 810 (904)
...................-...++ +..|.++|++....|.|..++.+...
T Consensus 963 ~~~~~~~~~~~t~~~~~~~~~p~~~--~~~y~i~v~~~~~ggdg~~s~~~~~~ 1013 (1051)
T KOG3513|consen 963 EDLQNDIEIILTMKLDAEFPEPSDL--DGKYDIKVRGYSPGGDGTISEEISID 1013 (1051)
T ss_pred ecccCCceeEecccccccccCcccc--CCcceeEeccccCCCCCCcCCccccc
Confidence 8875433111111112222222333 27999999999999999877766543
No 5
>KOG4222|consensus
Probab=100.00 E-value=7.7e-34 Score=307.47 Aligned_cols=730 Identities=20% Similarity=0.267 Sum_probs=437.8
Q ss_pred CCCCcce---eeEeeCCCCCCCCcEEEeccCCceEEEEeCCCC--------------CCCceecccc---ccc--ccceE
Q psy8771 20 LPPLIPG---YILVTEPGTAPRDVQVRPLSSSTMVIQWDEPET--------------PNGQITHPPT---RAA--RSHAR 77 (904)
Q Consensus 20 ~~p~~~~---~~~~~~p~~~p~~l~~~~~~~~s~~v~W~~~~~--------------~~g~i~~~~~---~~~--~~~~~ 77 (904)
.+|.|.. .+.+.. ++|..|.|+.-+.+..+|+|.+... +.|++..+.+ +.. +.+.+
T Consensus 30 ~~p~iiehp~d~vvs~--~~patlnc~asG~ppPti~w~k~G~~~~~~e~~shR~~lp~gsLf~l~~ahg~~a~~d~G~y 107 (1281)
T KOG4222|consen 30 QPPRIIEHPHDLVVSK--GEPATLNCKASGDPPPTIEWYKDGENVFKGEPGSHRFLLPDGSLFLLRLAHGKKAGHDHGVY 107 (1281)
T ss_pred CCCceEecchhhhccC--CCCceeecCCCCCCCCceecccCCcccCCCCCCCcceecCCccEEEEecccCCcccCCCcee
Confidence 5555522 233333 3799999999999999999987641 1455322211 111 44555
Q ss_pred EEEeee-ccCCeeeeeeeeccCCCCCCCCeEEcCCCCceEEecCCCeEEEEEE-ccCCCCeEEEeeCCccccCC-C--Cc
Q psy8771 78 LAAQSV-LRRGRLAHAVRQVADPVRRVPPQFSIPPPALLEVMLDSPLNLSCVA-VGSPMPFVKWRKGQNIELTP-D--DK 152 (904)
Q Consensus 78 ~~~~~~-~~~g~~~~~~~~v~~~~~~~~P~~~~~~~~~~~~~~g~~~~l~C~~-~g~p~p~i~W~k~~~~~~~~-~--~~ 152 (904)
.|+..+ ++.+....+.+.++ -.+-.|...|.+ +.+..|+.+.|+|.- .|.|.|.|.|.|+ |..+.. . .+
T Consensus 108 ~cvasn~~g~avSr~a~L~va----vlrddfrv~prd-~~~a~ge~avlEcgpP~ghpeptvSw~Kd-g~pl~~~~~~~~ 181 (1281)
T KOG4222|consen 108 SCVASNRLGEAVSRGASLIVA----VLRDDFRVSPRD-VQAAVGEEAVLECGPPRGHPEPTVSWVKD-GKPLDHYDVPII 181 (1281)
T ss_pred EeeecCccceeeecCceEEEE----EechhcccCccc-ccccccceeEEeccCCCCCCCCcceeecC-CCccccccceeE
Confidence 655544 44444445555543 223346667777 889999999999965 5999999999999 655542 2 23
Q ss_pred eeecceEEEEeee--cCCeEEEEEEEecCcce-EEEEEEEEEeecCCCCCCC---CCCcceEEEeecCCeEEEEEeCCCc
Q psy8771 153 LPVGRNVLTLDRV--TESENYTCIAASVLGVI-ETSTIVKVQCKYAPLLTLP---VAPLDVKISEVTATSVRLDWTYPSE 226 (904)
Q Consensus 153 ~~~~~~~l~i~~l--~d~g~Y~c~a~n~~g~~-~~~~~l~v~~~~~~~~~~P---~~p~~l~~~~~~~~sv~l~W~~~~~ 226 (904)
..+++|.|.|.++ +|.|.|.|.+.|..|.. +..++|+|+ ..| ..|.++.+....+ +.+.+...+.
T Consensus 182 ~lisgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~-------e~P~f~~rp~~~~v~~g~~--~~f~c~v~Gd 252 (1281)
T KOG4222|consen 182 ALISGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQ-------EKPWFWKRPKDLAVLVGAA--AEFDCRVGGD 252 (1281)
T ss_pred EEecCCcEEEeccccCCCceeeeeecccccccccccceeeec-------cCCccccccccceeecccc--cccccccCCC
Confidence 3468999999999 69999999999999994 457888888 333 2455554332222 3333333332
Q ss_pred cceEEEEEEEeCCCCCCeEEe-ecceeceEEEcCCCCCCeEEEEEEEEcCCCCCCCCCCeEEecCCCCCCCCCCc-----
Q psy8771 227 TLLYYVIQYKPKAANTPYSEI-SGIITTYYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRD----- 300 (904)
Q Consensus 227 ~~~~y~v~~~~~~~~~~~~~~-~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~s~~s~~~~~~t~~~~p~~~p~~----- 300 (904)
+.. .|.|+..+........ ....+.++.|....|.++..|.|.|.|..|.-.++....+...+. ....|.+
T Consensus 253 P~P--~Vrwkk~~~~~P~~ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~-f~kkp~dq~v~l 329 (1281)
T KOG4222|consen 253 PQP--TVRWKKDDPSLPRSRYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPS-FGKKPRDQKVAL 329 (1281)
T ss_pred CCC--ceeeeccCCCCCccceeeeeccccccccccCCCcccceeeeccccccccccccceEEecCcc-cccccCcccccc
Confidence 222 2333332222111111 111225688899999999999999999999877676666654321 1111111
Q ss_pred -----eEecccCCCeeEEEecC-----------CCCCCceeeEEEEEeeceeEEEEEcCCCCCcEEEEEEEEEcCCCCCC
Q psy8771 301 -----VQVRPLSSSTMVIQWDE-----------PETPNGQITAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGA 364 (904)
Q Consensus 301 -----l~~~~~~~~~v~l~W~~-----------p~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~Y~v~v~a~~~~g~~~ 364 (904)
+.+...+.-.-.+.|.+ |...++.-. +....+..++++.....-.+.+.+.+..|.+.
T Consensus 330 g~~vt~pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~r~s------vs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~ 403 (1281)
T KOG4222|consen 330 GGTVTFPCETLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGS------VSPTGTLTITNVRQSDEGYYVCQTQTSAGSSL 403 (1281)
T ss_pred CceEEeeeecCCCCCcceEEeccCcceecccCCCCCcCccce------ecCCCCcccccccccccceEeecccccccccc
Confidence 11111222222233332 222221111 01111445555555444444444444444332
Q ss_pred CCCCcceeeccC--CCCCCCCcccccccccceeeeEEEEeccccCcEEEEEEeeecCCCCCCCCCCcceEeeccCCCCce
Q psy8771 365 TTPPIPVRTKQY--GKTPGFGEQAAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYGKTPGF 442 (904)
Q Consensus 365 ~s~~~~~~t~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 442 (904)
......+..... .+++.......+.....+....+.-.-....+.-.-|+.+ |.+..... ...........
T Consensus 404 ~~a~~~qt~~~~~~rPpp~i~~g~~nQtl~v~s~a~l~c~atg~P~p~i~wl~d----g~~v~~~d---~~~s~~~~~~l 476 (1281)
T KOG4222|consen 404 TKAYLEQTDVLTDSRPPPIIEQGPANQTLPVGSTASLPCSATGAPTPNISWLKD----GCNVMNPD---SRISQQEIGSL 476 (1281)
T ss_pred cceeEEEEeeeccCCCCceeeecccccccccCcccccChhhhCCCCCCchhhhc----ccccccCC---cccceeeecee
Confidence 221111111111 1111111111111111111110000000000000000000 00000000 00000012345
Q ss_pred eeeeccCCeEEEEEEEEeeCCCCCCCCCCceeeec-----------CCCCCCCCCCeEEEecCCceEEEEecCCCCCC-C
Q psy8771 443 GEQALYPNTLYYIWLAAQSPRGEGATTPPIPVRTK-----------QYEPGTAPRDVQVRPLSSSTMVIQWDEPETPN-G 510 (904)
Q Consensus 443 ~~~~L~p~~~Y~~~v~a~~~~g~~~~s~~~~~~t~-----------~~~p~~~p~~l~v~~~~~~~~~l~W~~p~~~~-~ 510 (904)
++.+|+-...|.|++.|.+..|++.++..+.+.-. ...-+++|....+..++.++++|+|.+....+ +
T Consensus 477 ~i~dl~~~DtG~YTc~as~~~ges~wSatl~v~~~~~s~q~~r~~D~S~~pS~p~~p~v~~v~~~~v~LsW~~~s~sg~v 556 (1281)
T KOG4222|consen 477 RIRDLKGPDTGRYTCIASDESGESTWSATLTVEKAGSSQQFCRCEDPSALPSPPGTPGVVNVSRTSVTLSWQPTSPSGAV 556 (1281)
T ss_pred eeeeeecCCCcceeeeccCcccccccceeeEhhhcCcccccccCCChhhCCCCCCCCccccCCCceEEecccCCCCCCcc
Confidence 78889999999999999999999988876554321 11234667777888899999999999976533 4
Q ss_pred ceeeEEEEEEeCCCCCCcceEEEee-cCceEEEEcCCCCCCeEEEEEEEEeCCCCCCCCCcE-EEecCCCCCCCC-CCce
Q psy8771 511 QITGYKVYYTQDQSLPMSAWETQVV-DNNQLTTISDLTPHTIYTIRVQAFTSVGPGPLSAPV-LVKTQQGVPSQP-RDLR 587 (904)
Q Consensus 511 ~i~~Y~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~p~t~Y~~~V~a~~~~g~~~~S~~~-~~~t~~~~p~~p-~~~~ 587 (904)
++.+|.+++...+.. ..|..... -..+.+.|.+|+|++.|.|.|+|.|..|.+..|... .++|....+..- .+-.
T Consensus 557 P~s~yiieafs~~~~--etw~~ta~~v~~t~~~I~gL~P~~sylf~vRa~n~~Gis~Ps~~S~~vrta~a~~~~a~ad~~ 634 (1281)
T KOG4222|consen 557 PASGYIIEAFSPDLG--ETWQTTAGRVKTTTYAIRGLKPNLSYLFLVRAENEQGISDPSTSSDPVRTAPADAAAAGADHQ 634 (1281)
T ss_pred ccchhHHHHhhhhhc--ccccccccccccceeeecCcCccceeeeeeeccccccccCCcccCCccccCCCChhhhhhhHH
Confidence 889999998776533 44555443 456778999999999999999999999987655432 233322221110 0000
Q ss_pred EEecCCCeEEEEEeCCCCCCCCceEEEEEeccCCCCCcceEEEeeccceEEEeccCCCC-CCCceeeEEEEEEeCCcccc
Q psy8771 588 AVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKPRDLRAVDIQETAVTLAWSKPTH-SGENIISYELYWNDTYAKAK 666 (904)
Q Consensus 588 ~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~p~~l~~~~~~~~~~~l~w~~~~~-~~~~~~~y~v~~~~~~~~~~ 666 (904)
-.........|.|..+. ..+.+++.+.|+.+.. +...+.+|+|.|+.......
T Consensus 635 k~~~~ls~~l~~l~~~~--------------------------~L~asslr~~w~~~kq~~~~~i~g~~I~~r~~~~~~a 688 (1281)
T KOG4222|consen 635 KVQRELSNELLRLSNPN--------------------------VLNASSLRLGWTKDKQHGSQYIQGYRISYRSLGSQLA 688 (1281)
T ss_pred HHHHhhcccceeecccc--------------------------ccchhheeeeeeeecccCcccccceEEEeccCccccc
Confidence 00001112445666553 2567777777877654 46789999999998876221
Q ss_pred ----ceEEecccceEEEeCCCCCcEEEEEEEEEcCCCC---CCCCCCeeEEecCCCCCCCCCCcE---EEecCCCEEEEE
Q psy8771 667 ----HHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGE---GATTPPIPVRTKQYVPGAPPQNVS---CEPLSSTSIRIS 736 (904)
Q Consensus 667 ----~~~~~~~~~~~~l~~L~p~t~Y~v~V~a~~~~G~---~~~s~~~~~~t~~~~p~~~P~~l~---~~~~~~~~v~l~ 736 (904)
..........+.+.+|.|++.|+|.+..+...|. |.++....+.|.+.+|..+|.++. .-..+.++..|+
T Consensus 689 ~~s~~~v~~~t~~s~v~~nl~p~t~ye~f~~Pf~~~~~s~~g~pS~sk~alt~e~~PSapp~~~~~~s~~~~n~Ta~~Vs 768 (1281)
T KOG4222|consen 689 QWSNAGVTVPTPESVVVPNLKPGTNYEFFVRPFFPHGYSIQGAPSNSKTALTLEEPPSAPPQGVQHVSKGSYNGTAGSVS 768 (1281)
T ss_pred cccccceeccCCcceeccccCCCccceeeccCccCCCcceecCCcccccccccccCCCCCCCCccccccccCCCceeeEE
Confidence 2334445678999999999999999999999664 677888999999999999999854 444567899999
Q ss_pred ecCCCCCCCCccEEEEEEEEEEccCCCCccEEEEec-CcceEEecCCCCCceEEEEEEEeeCCCCCCCCCcEEeec
Q psy8771 737 WEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLK-NQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRT 811 (904)
Q Consensus 737 W~~~~~~~~~g~~~~Y~v~~~~~~~~~~~~~~~~~~-~~~~~~i~~L~p~t~Y~~~V~a~~~~g~g~~s~~~~~~t 811 (904)
|.+++.+..||.+.+|.|........ ......... ...+.+|.+|.+|..|.|+|.|.+.+|.|..+.+..+.+
T Consensus 769 w~~pp~d~~ng~~qg~ki~~~~~e~t-r~h~n~t~~a~~~sv~i~~l~~g~ay~vtv~a~T~aGvG~~s~p~~~~~ 843 (1281)
T KOG4222|consen 769 WAPPPADVQNGILQGYKIECSGGEKT-RIHINKTTNARTGSVTIGNLVTGIAYSVTVAARTGAGVGVKSPPQPIVF 843 (1281)
T ss_pred ecCCcccccCCcccceeEEeecCccc-cccccccccCCCCceEeccccccceEEEEEeeecCCccCCCCCCeeeec
Confidence 99999999999999999998765521 111223333 778899999999999999999999999999887666433
No 6
>KOG4222|consensus
Probab=100.00 E-value=2.8e-30 Score=280.10 Aligned_cols=730 Identities=19% Similarity=0.212 Sum_probs=420.6
Q ss_pred CCCCeEEcCCCCceEEecCCCeEEEEEEccCCCCeEEEeeCCccccC---CCCceeecceEEEEeee-------cCCeEE
Q psy8771 102 RVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELT---PDDKLPVGRNVLTLDRV-------TESENY 171 (904)
Q Consensus 102 ~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~k~~~~~~~---~~~~~~~~~~~l~i~~l-------~d~g~Y 171 (904)
..+|.|+..|.+ +.+..|++++|.|.+.|+|.|+|+|+|+|...+. ...|+...+++|.+-.+ .|.|.|
T Consensus 29 d~~p~iiehp~d-~vvs~~~patlnc~asG~ppPti~w~k~G~~~~~~e~~shR~~lp~gsLf~l~~ahg~~a~~d~G~y 107 (1281)
T KOG4222|consen 29 DQPPRIIEHPHD-LVVSKGEPATLNCKASGDPPPTIEWYKDGENVFKGEPGSHRFLLPDGSLFLLRLAHGKKAGHDHGVY 107 (1281)
T ss_pred cCCCceEecchh-hhccCCCCceeecCCCCCCCCceecccCCcccCCCCCCCcceecCCccEEEEecccCCcccCCCcee
Confidence 689999999999 9999999999999999999999999999434443 35678888888888766 388999
Q ss_pred EEEEEecCcc-eEEEEEEEEEeecCCCCCCCCCCcceEEEeecCCeEEEEEeCCCccceEEEEEEEeCCCCCCeE---Ee
Q psy8771 172 TCIAASVLGV-IETSTIVKVQCKYAPLLTLPVAPLDVKISEVTATSVRLDWTYPSETLLYYVIQYKPKAANTPYS---EI 247 (904)
Q Consensus 172 ~c~a~n~~g~-~~~~~~l~v~~~~~~~~~~P~~p~~l~~~~~~~~sv~l~W~~~~~~~~~y~v~~~~~~~~~~~~---~~ 247 (904)
.|.|.|..|. .+..+.|.+..... ..-..|..+++ .....+.+++.+|.+ ..--.|.|.+++....+. ..
T Consensus 108 ~cvasn~~g~avSr~a~L~vavlrd---dfrv~prd~~~--a~ge~avlEcgpP~g-hpeptvSw~Kdg~pl~~~~~~~~ 181 (1281)
T KOG4222|consen 108 SCVASNRLGEAVSRGASLIVAVLRD---DFRVSPRDVQA--AVGEEAVLECGPPRG-HPEPTVSWVKDGKPLDHYDVPII 181 (1281)
T ss_pred EeeecCccceeeecCceEEEEEech---hcccCcccccc--cccceeEEeccCCCC-CCCCcceeecCCCccccccceeE
Confidence 9999999998 44556666552211 22235555433 344556666665521 111124444443322211 11
Q ss_pred ecceeceEEEcCCCCCCeEEEEEEEEcCCCCCCCCCCeEEecCCCCCCCCCCceEecccCCCeeEEEecCCCCCCceeeE
Q psy8771 248 SGIITTYYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITA 327 (904)
Q Consensus 248 ~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~s~~s~~~~~~t~~~~p~~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~~~ 327 (904)
.-.....+.|.+++..+++.|.|.|.|..|.-...............-..|.++.+....+ +.+.+..+.++...+.+
T Consensus 182 ~lisgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~--~~f~c~v~GdP~P~Vrw 259 (1281)
T KOG4222|consen 182 ALISGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFWKRPKDLAVLVGAA--AEFDCRVGGDPQPTVRW 259 (1281)
T ss_pred EEecCCcEEEeccccCCCceeeeeecccccccccccceeeeccCCccccccccceeecccc--cccccccCCCCCCceee
Confidence 2233467999999999999999999999998653322111111111223444444433221 22223222222222222
Q ss_pred EE---------EEeeceeEEEEEcCCCCCcEEEEEEEEEcCCCCCCCCCCcceeeccCCCCCCCCcccccccccceeeeE
Q psy8771 328 KH---------HRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYGKTPGFGEQAAKHHRRIGLVET 398 (904)
Q Consensus 328 ~~---------~~~~~~~~~~~~~~L~~~~~Y~v~v~a~~~~g~~~~s~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (904)
.. ........+..+....|..+-.+.+.+.+..|.-..+....|... +.++..........+....
T Consensus 260 kk~~~~~P~~ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~ap-----P~f~kkp~dq~v~lg~~vt 334 (1281)
T KOG4222|consen 260 KKDDPSLPRSRYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAP-----PSFGKKPRDQKVALGGTVT 334 (1281)
T ss_pred eccCCCCCccceeeeeccccccccccCCCcccceeeeccccccccccccceEEecC-----cccccccCccccccCceEE
Confidence 11 111111234455566666777777778877776666554444432 2222222222222222222
Q ss_pred EEEeccccCcEEEEEEeeecCCCCCCCCCCcceEeeccCCCCceeeeeccCCeEEEEEEEEeeCCCCCCCCCCceeeecC
Q psy8771 399 YSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYGKTPGFGEQALYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQ 478 (904)
Q Consensus 399 ~~~~~~~~~~~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~~~v~a~~~~g~~~~s~~~~~~t~~ 478 (904)
+.-.-+.....-.||..-....-.+...+.-+-........-..+++++.....-.|-+.+.+..|.+..-.........
T Consensus 335 ~pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~ 414 (1281)
T KOG4222|consen 335 FPCETLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVL 414 (1281)
T ss_pred eeeecCCCCCcceEEeccCcceecccCCCCCcCccceecCCCCcccccccccccceEeecccccccccccceeEEEEeee
Confidence 22222211112222221100000000000000000001112267888888888777888888888776544433332221
Q ss_pred CCCCCCCCCeEEEecCC----ceEEEEecCCCCCCCceeeEEEEEEeCCCCCCcceEEE-eecCceEEEEcCCCCCCeEE
Q psy8771 479 YEPGTAPRDVQVRPLSS----STMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQ-VVDNNQLTTISDLTPHTIYT 553 (904)
Q Consensus 479 ~~p~~~p~~l~v~~~~~----~~~~l~W~~p~~~~~~i~~Y~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~p~t~Y~ 553 (904)
.. ..||-.+.....+. .+..+-|.... +. -.|.+.|..++-. ...|... ..-......+.+|.-.-.|.
T Consensus 415 ~~-~rPpp~i~~g~~nQtl~v~s~a~l~c~at---g~-P~p~i~wl~dg~~-v~~~d~~~s~~~~~~l~i~dl~~~DtG~ 488 (1281)
T KOG4222|consen 415 TD-SRPPPIIEQGPANQTLPVGSTASLPCSAT---GA-PTPNISWLKDGCN-VMNPDSRISQQEIGSLRIRDLKGPDTGR 488 (1281)
T ss_pred cc-CCCCceeeecccccccccCcccccChhhh---CC-CCCCchhhhcccc-cccCCcccceeeeceeeeeeeecCCCcc
Confidence 11 12222222222111 12223332211 10 1234444443311 1111111 11122345677777777888
Q ss_pred EEEEEEeCCCCCCCCCcEEEecCC------------CCCCCCCCceEEecCCCeEEEEEeCCCCCCCCceEEEEEeccCC
Q psy8771 554 IRVQAFTSVGPGPLSAPVLVKTQQ------------GVPSQPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTY 621 (904)
Q Consensus 554 ~~V~a~~~~g~~~~S~~~~~~t~~------------~~p~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~ 621 (904)
+++.|.+..|...||..+.+.-.. ..|++|..-.+..++.++++|+|.+...
T Consensus 489 YTc~as~~~ges~wSatl~v~~~~~s~q~~r~~D~S~~pS~p~~p~v~~v~~~~v~LsW~~~s~---------------- 552 (1281)
T KOG4222|consen 489 YTCIASDESGESTWSATLTVEKAGSSQQFCRCEDPSALPSPPGTPGVVNVSRTSVTLSWQPTSP---------------- 552 (1281)
T ss_pred eeeeccCcccccccceeeEhhhcCcccccccCCChhhCCCCCCCCccccCCCceEEecccCCCC----------------
Confidence 899999999988888765543221 2344555556666666677777766532
Q ss_pred CCCcceEEEeeccceEEEeccCCCCCCCceeeEEEEEEeCCccccceEE--ecccceEEEeCCCCCcEEEEEEEEEcCCC
Q psy8771 622 AKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRR--IGLVETYSLTGLYPNTLYYIWLAAQSPRG 699 (904)
Q Consensus 622 ~~p~~l~~~~~~~~~~~l~w~~~~~~~~~~~~y~v~~~~~~~~~~~~~~--~~~~~~~~l~~L~p~t~Y~v~V~a~~~~G 699 (904)
.+..++.+|.+++...+-.+..... ....+.+.|.+|+|++.|.|.|+|.|..|
T Consensus 553 ------------------------sg~vP~s~yiieafs~~~~etw~~ta~~v~~t~~~I~gL~P~~sylf~vRa~n~~G 608 (1281)
T KOG4222|consen 553 ------------------------SGAVPASGYIIEAFSPDLGETWQTTAGRVKTTTYAIRGLKPNLSYLFLVRAENEQG 608 (1281)
T ss_pred ------------------------CCccccchhHHHHhhhhhcccccccccccccceeeecCcCccceeeeeeecccccc
Confidence 1456888899998776655443222 23457899999999999999999999999
Q ss_pred CCCCCCCe-eEEecCCCCCCC---------------CCCcEEEecCCCEEEEEecCCCCCCCCccEEEEEEEEEEccCCC
Q psy8771 700 EGATTPPI-PVRTKQYVPGAP---------------PQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSD 763 (904)
Q Consensus 700 ~~~~s~~~-~~~t~~~~p~~~---------------P~~l~~~~~~~~~v~l~W~~~~~~~~~g~~~~Y~v~~~~~~~~~ 763 (904)
.+.++..- .++|.+..+... -..-.....++.+|.+.|..... +....+.+|.|.|+......
T Consensus 609 is~Ps~~S~~vrta~a~~~~a~ad~~k~~~~ls~~l~~l~~~~~L~asslr~~w~~~kq-~~~~~i~g~~I~~r~~~~~~ 687 (1281)
T KOG4222|consen 609 ISDPSTSSDPVRTAPADAAAAGADHQKVQRELSNELLRLSNPNVLNASSLRLGWTKDKQ-HGSQYIQGYRISYRSLGSQL 687 (1281)
T ss_pred ccCCcccCCccccCCCChhhhhhhHHHHHHhhcccceeeccccccchhheeeeeeeecc-cCcccccceEEEeccCcccc
Confidence 98776432 234433211110 00112244567899999998742 33567999999999987522
Q ss_pred CccEEEEec--CcceEEecCCCCCceEEEEEEEeeCCC---CCCCCCcEEeecCCCCCCC----C----------ccCCc
Q psy8771 764 SEASIVTLK--NQTSFVLDELKKWTEYRIWVLAGTSIG---DGPSSYPITIRTHEDDPSE----V----------CPTQN 824 (904)
Q Consensus 764 ~~~~~~~~~--~~~~~~i~~L~p~t~Y~~~V~a~~~~g---~g~~s~~~~~~t~~~~P~~----v----------~~~~~ 824 (904)
.......+. ....+.+.+|+|++.|+|.++.+...| .|..+.+..+.|.+.+|+. + ++..+
T Consensus 688 a~~s~~~v~~~t~~s~v~~nl~p~t~ye~f~~Pf~~~~~s~~g~pS~sk~alt~e~~PSapp~~~~~~s~~~~n~Ta~~V 767 (1281)
T KOG4222|consen 688 AQWSNAGVTVPTPESVVVPNLKPGTNYEFFVRPFFPHGYSIQGAPSNSKTALTLEEPPSAPPQGVQHVSKGSYNGTAGSV 767 (1281)
T ss_pred ccccccceeccCCcceeccccCCCccceeeccCccCCCcceecCCcccccccccccCCCCCCCCccccccccCCCceeeE
Confidence 222333333 778899999999999999999998855 4677888889998888854 2 22233
Q ss_pred ceeeCC--CCCceeeeeee--ecCC-ce---EEecCCCeeEEEEcCCCCCcEEEEEEEEEecCCCCCCCCceEEec
Q psy8771 825 DFRKNK--KTNGSNFKGGY--LNDP-MR---FDVSDGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKT 892 (904)
Q Consensus 825 ~W~~p~--~~~~~~~~~~~--~~~~-~~---~~~~~~~~~~~~i~~L~p~t~Y~~~v~a~n~~G~g~~s~~~~~~t 892 (904)
.|.+|. ..||.+..|.+ .+.. .. ...++....+..|.+|.+|..|.|+|.|.+.+|.|..+.+..+.+
T Consensus 768 sw~~pp~d~~ng~~qg~ki~~~~~e~tr~h~n~t~~a~~~sv~i~~l~~g~ay~vtv~a~T~aGvG~~s~p~~~~~ 843 (1281)
T KOG4222|consen 768 SWAPPPADVQNGILQGYKIECSGGEKTRIHINKTTNARTGSVTIGNLVTGIAYSVTVAARTGAGVGVKSPPQPIVF 843 (1281)
T ss_pred EecCCcccccCCcccceeEEeecCccccccccccccCCCCceEeccccccceEEEEEeeecCCccCCCCCCeeeec
Confidence 898553 45666554433 2222 11 113457778999999999999999999999999998777765444
No 7
>KOG0196|consensus
Probab=99.71 E-value=1.2e-15 Score=161.48 Aligned_cols=192 Identities=26% Similarity=0.406 Sum_probs=152.4
Q ss_pred CCCCCCCCeEEEecCCceEEEEecCCCCCCC-ceeeEEEEEEeCCCCCCcceE-----EEee-----cCceEEEEcCCCC
Q psy8771 480 EPGTAPRDVQVRPLSSSTMVIQWDEPETPNG-QITGYKVYYTQDQSLPMSAWE-----TQVV-----DNNQLTTISDLTP 548 (904)
Q Consensus 480 ~p~~~p~~l~v~~~~~~~~~l~W~~p~~~~~-~i~~Y~v~~~~~~~~~~~~~~-----~~~~-----~~~~~~~~~~L~p 548 (904)
.||++|.+|... ++.+++.|.|.+|.+.+| ....|.|.++...... ..+. .... -..+...+.+|.|
T Consensus 330 ~PPSaP~nlis~-vn~Ts~~L~W~~P~d~GGR~Di~y~v~Ck~c~~~~-~~C~~Cg~~V~f~P~q~gLt~~~V~v~~L~a 407 (996)
T KOG0196|consen 330 RPPSAPRNLISN-VNGTSLILEWSPPADTGGREDITYNVICKKCGGGR-GACEPCGDNVRFTPRQRGLTETSVTVSDLLA 407 (996)
T ss_pred CCCCccceeeee-cccceEEEEecCCcccCCCcceEEEEEeeccCCCC-CccccCCCCceECCCCCCcccceEEEecccc
Confidence 578999999755 899999999999998887 6677888887765221 1111 1111 2356789999999
Q ss_pred CCeEEEEEEEEeCCCC-C---CCCCcEEEecCCCCCCCCCCceEEecCCCeEEEEEeCCCCCCCCceEEEEEeccCCCCC
Q psy8771 549 HTIYTIRVQAFTSVGP-G---PLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKP 624 (904)
Q Consensus 549 ~t~Y~~~V~a~~~~g~-~---~~S~~~~~~t~~~~p~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~p 624 (904)
.+.|+|.|.|+|+... + .....+.++|....|+++..++....+.++++|+|..|..
T Consensus 408 h~~YTFeV~AvNgVS~lsp~~~~~a~vnItt~qa~ps~V~~~r~~~~~~~sitlsW~~p~~------------------- 468 (996)
T KOG0196|consen 408 HTNYTFEVEAVNGVSDLSPFPRQFASVNITTNQAAPSPVSVLRQVSRTSDSITLSWSEPDQ------------------- 468 (996)
T ss_pred ccccEEEEEEeecccccCCCCCcceeEEeeccccCCCccceEEEeeeccCceEEecCCCCC-------------------
Confidence 9999999999998542 1 2334567888888888889999999899999999998876
Q ss_pred cceEEEeeccceEEEeccCCCCCCCceeeEEEEEEeCCcccc-ceEEecccceEEEeCCCCCcEEEEEEEEEcCCCCCCC
Q psy8771 625 RDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAK-HHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGAT 703 (904)
Q Consensus 625 ~~l~~~~~~~~~~~l~w~~~~~~~~~~~~y~v~~~~~~~~~~-~~~~~~~~~~~~l~~L~p~t~Y~v~V~a~~~~G~~~~ 703 (904)
.++.+..|+|+|.+.+..+. ........+..+|.+|+|++.|.|+|+|.+..|.|..
T Consensus 469 ----------------------png~ildYEvky~ek~~~e~~~~~~~t~~~~~ti~gL~p~t~YvfqVRarT~aG~G~~ 526 (996)
T KOG0196|consen 469 ----------------------PNGVILDYEVKYYEKDEDERSYSTLKTKTTTATITGLKPGTVYVFQVRARTAAGYGPY 526 (996)
T ss_pred ----------------------CCCcceeEEEEEeeccccccceeEEecccceEEeeccCCCcEEEEEEEEecccCCCCC
Confidence 67778999999998875444 3444556679999999999999999999999999999
Q ss_pred CCCeeEEecCC
Q psy8771 704 TPPIPVRTKQY 714 (904)
Q Consensus 704 s~~~~~~t~~~ 714 (904)
|....+.|.+.
T Consensus 527 S~~~~fqT~~~ 537 (996)
T KOG0196|consen 527 SGKHEFQTLPS 537 (996)
T ss_pred CCceeeeecCc
Confidence 99999999865
No 8
>KOG0196|consensus
Probab=99.67 E-value=4e-15 Score=157.73 Aligned_cols=189 Identities=25% Similarity=0.365 Sum_probs=151.5
Q ss_pred CCCCCcceEEEeeccceEEEeccCCCCCC-CceeeEEEEEEeCCcccc-------ceEEec-----ccceEEEeCCCCCc
Q psy8771 620 TYAKPRDLRAVDIQETAVTLAWSKPTHSG-ENIISYELYWNDTYAKAK-------HHRRIG-----LVETYSLTGLYPNT 686 (904)
Q Consensus 620 ~~~~p~~l~~~~~~~~~~~l~w~~~~~~~-~~~~~y~v~~~~~~~~~~-------~~~~~~-----~~~~~~l~~L~p~t 686 (904)
+|++|.+|... ++.+++.|.|++|.+.+ .....|.|.+..-..... .....+ ....+.+.+|.|.+
T Consensus 331 PPSaP~nlis~-vn~Ts~~L~W~~P~d~GGR~Di~y~v~Ck~c~~~~~~C~~Cg~~V~f~P~q~gLt~~~V~v~~L~ah~ 409 (996)
T KOG0196|consen 331 PPSAPRNLISN-VNGTSLILEWSPPADTGGREDITYNVICKKCGGGRGACEPCGDNVRFTPRQRGLTETSVTVSDLLAHT 409 (996)
T ss_pred CCCccceeeee-cccceEEEEecCCcccCCCcceEEEEEeeccCCCCCccccCCCCceECCCCCCcccceEEEecccccc
Confidence 57888998776 99999999999997744 466788888876553221 112211 35689999999999
Q ss_pred EEEEEEEEEcCCCC-C---CCCCCeeEEecCCCCCCCCCCcEEEecCCCEEEEEecCCCCCCCCccEEEEEEEEEEccCC
Q psy8771 687 LYYIWLAAQSPRGE-G---ATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRS 762 (904)
Q Consensus 687 ~Y~v~V~a~~~~G~-~---~~s~~~~~~t~~~~p~~~P~~l~~~~~~~~~v~l~W~~~~~~~~~g~~~~Y~v~~~~~~~~ 762 (904)
.|+|.|.|+|+.-. + .....+.++|....|+ +...++......+++.|+|..| +.+||.+..|+|.|.+.+.+
T Consensus 410 ~YTFeV~AvNgVS~lsp~~~~~a~vnItt~qa~ps-~V~~~r~~~~~~~sitlsW~~p--~~png~ildYEvky~ek~~~ 486 (996)
T KOG0196|consen 410 NYTFEVEAVNGVSDLSPFPRQFASVNITTNQAAPS-PVSVLRQVSRTSDSITLSWSEP--DQPNGVILDYEVKYYEKDED 486 (996)
T ss_pred ccEEEEEEeecccccCCCCCcceeEEeeccccCCC-ccceEEEeeeccCceEEecCCC--CCCCCcceeEEEEEeecccc
Confidence 99999999997532 2 2234578889888887 4577899999999999999999 68999999999999998642
Q ss_pred CCccEEEEec-CcceEEecCCCCCceEEEEEEEeeCCCCCCCCCcEEeecCCC
Q psy8771 763 DSEASIVTLK-NQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHED 814 (904)
Q Consensus 763 ~~~~~~~~~~-~~~~~~i~~L~p~t~Y~~~V~a~~~~g~g~~s~~~~~~t~~~ 814 (904)
. .....+. ..+..+|.+|+|++.|.|+|+|.+..|.|.+|....|.|.+.
T Consensus 487 e--~~~~~~~t~~~~~ti~gL~p~t~YvfqVRarT~aG~G~~S~~~~fqT~~~ 537 (996)
T KOG0196|consen 487 E--RSYSTLKTKTTTATITGLKPGTVYVFQVRARTAAGYGPYSGKHEFQTLPS 537 (996)
T ss_pred c--cceeEEecccceEEeeccCCCcEEEEEEEEecccCCCCCCCceeeeecCc
Confidence 2 2334444 788999999999999999999999999999999999999875
No 9
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.61 E-value=7.4e-15 Score=122.05 Aligned_cols=91 Identities=20% Similarity=0.296 Sum_probs=80.9
Q ss_pred CeEEcCCCCceEEecCCCeEEEEEEccCCCCeEEEeeCCccccCCCCceee----cceEEEEeee--cCCeEEEEEEEec
Q psy8771 105 PQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPV----GRNVLTLDRV--TESENYTCIAASV 178 (904)
Q Consensus 105 P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~----~~~~l~i~~l--~d~g~Y~c~a~n~ 178 (904)
|.|+..|.+ +.+..|+.+.|.|.+.|.|.|.|.|+|+ +..+..+.++.+ ....|.|.++ +|+|.|+|.|.|.
T Consensus 1 p~~~~~p~~-~~v~~G~~v~l~C~~~G~p~p~v~W~kd-g~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~ 78 (98)
T cd05762 1 PQIIQFPED-MKVRAGESVELFCKVTGTQPITCTWMKF-RKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENK 78 (98)
T ss_pred CceEECCcC-EEEECCCEEEEEEEEcccCCCceEEEEC-CEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcC
Confidence 668888888 9999999999999999999999999999 777766666654 3568999999 6999999999999
Q ss_pred CcceEEEEEEEEEeecCCCCCCCCCC
Q psy8771 179 LGVIETSTIVKVQCKYAPLLTLPVAP 204 (904)
Q Consensus 179 ~g~~~~~~~l~v~~~~~~~~~~P~~p 204 (904)
.|...+++.|.|. ..|.+|
T Consensus 79 ~G~~~~~~~l~V~-------~~P~pP 97 (98)
T cd05762 79 LGSRQAQVNLTVV-------DKPDPP 97 (98)
T ss_pred CCceeEEEEEEEe-------cCCCCC
Confidence 9999999999999 788877
No 10
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.60 E-value=6.9e-15 Score=119.80 Aligned_cols=86 Identities=22% Similarity=0.454 Sum_probs=77.4
Q ss_pred CCeEEcCCCCceEEecCCCeEEEEEEccCCCCeEEEeeCCccccCCCCceeecceEEEEeee--cCCeEEEEEEEecCcc
Q psy8771 104 PPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRNVLTLDRV--TESENYTCIAASVLGV 181 (904)
Q Consensus 104 ~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~l~i~~l--~d~g~Y~c~a~n~~g~ 181 (904)
||.|...+.+ ..+.+|+.+.|+|.+.|.|.|.|+|+|+ +..+....++...++.|.|.++ +|+|.|+|.|.|..|.
T Consensus 1 ~p~i~~~~~~-~~~~~G~~v~l~C~~~G~P~P~v~W~k~-~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 78 (88)
T cd05851 1 PADINVKFKD-TYALKGQNVTLECFALGNPVPVIRWRKI-LEPMPATAEISMSGAVLKIFNIQPEDEGTYECEAENIKGK 78 (88)
T ss_pred CCceEEcccc-EEEeCCCcEEEEEEecccCCCEEEEEEC-CcCCCCCCEEecCCCEEEECcCChhhCEEEEEEEEcCCCc
Confidence 6889999998 9999999999999999999999999999 6677666677677789999999 6999999999999999
Q ss_pred eEEEEEEEEE
Q psy8771 182 IETSTIVKVQ 191 (904)
Q Consensus 182 ~~~~~~l~v~ 191 (904)
.+..+.|.|+
T Consensus 79 ~~~~~~l~V~ 88 (88)
T cd05851 79 DKHQARVYVQ 88 (88)
T ss_pred eEEEEEEEEC
Confidence 9999988874
No 11
>KOG4258|consensus
Probab=99.57 E-value=9.4e-14 Score=147.90 Aligned_cols=317 Identities=20% Similarity=0.336 Sum_probs=204.4
Q ss_pred CCeEEEecCCceEEEEecCCCCCC-CceeeEEEEEEeCCC-----------CCCcceEEEeecC---------ceEEEEc
Q psy8771 486 RDVQVRPLSSSTMVIQWDEPETPN-GQITGYKVYYTQDQS-----------LPMSAWETQVVDN---------NQLTTIS 544 (904)
Q Consensus 486 ~~l~v~~~~~~~~~l~W~~p~~~~-~~i~~Y~v~~~~~~~-----------~~~~~~~~~~~~~---------~~~~~~~ 544 (904)
.++.....+.+++.|+|..-...+ .+..+|.++|+...- -....|....... ..-+.+.
T Consensus 492 l~~~~~~~~~dsi~lrW~~~~~~d~r~llg~~~~yKEaP~qNvT~~dg~~aCg~~~W~~~~v~~~~~~p~~~~~~~~~l~ 571 (1025)
T KOG4258|consen 492 LQFSSTVTSADSILLRWERYQPPDMRDLLGFLLHYKEAPFQNVTEEDGRDACGSNSWNVVDVDPPDLIPNDGTHPGFLLD 571 (1025)
T ss_pred eeeeeEEeecceeEEEecccCCcchhhhheeeEeeccCCccccceecCccccccCcceEEeccCCcCCCccccccceehh
Confidence 355666678889999998833222 367899999986531 1124566554411 2246899
Q ss_pred CCCCCCeEEEEEEEEeCCCC----CCCCCcEEEecCCCCCCCCCCceEEecCCCeEEEEEeCCCCCCCCceEEEEEeccC
Q psy8771 545 DLTPHTIYTIRVQAFTSVGP----GPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDT 620 (904)
Q Consensus 545 ~L~p~t~Y~~~V~a~~~~g~----~~~S~~~~~~t~~~~p~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~ 620 (904)
+|+|.|.|.+.|++....-. -..|+...++|....|++|..+-....+++.+.|+|.+|..+||.++.|.|.|..-
T Consensus 572 ~LkP~TqYAvfVkT~t~t~~~~~~~A~S~I~YvqT~~~~PspPl~~ls~snsSsqi~l~W~pP~~pNG~lt~Ylv~wer~ 651 (1025)
T KOG4258|consen 572 GLKPWTQYAVFVKTLTVTEAHEAYEAKSKIGYVQTLPDIPSPPLDVLSKSNSSSQILLKWKPPSQPNGNLTHYLVVWERQ 651 (1025)
T ss_pred cCCccceeEEEEeeeehhhhccccccccceEEEEecCCCCCCcchhhhccCcchheeEEecCCCCCCCceeEEEEEEEec
Confidence 99999999999999843221 14688889999999999998887777778899999999999999999999998551
Q ss_pred C-------------C--------CCcceEEEeec---------------------------------------cceEEEe
Q psy8771 621 Y-------------A--------KPRDLRAVDIQ---------------------------------------ETAVTLA 640 (904)
Q Consensus 621 ~-------------~--------~p~~l~~~~~~---------------------------------------~~~~~l~ 640 (904)
. + .| .+...+.. .+.+.+.
T Consensus 652 ~~~~yl~~~nYC~~~~k~p~~~~~p-~~~~ed~d~~~e~e~~~~~Cc~c~~~~~~~~~e~eea~~~~~FEd~L~n~i~vp 730 (1025)
T KOG4258|consen 652 AEDGYLEQRNYCHKGLKLPIRADLP-SFDSEDMDPLLEMEGHTGPCCSCPPTESYPQYEDEEASEQKTFEDFLHNAIFVP 730 (1025)
T ss_pred cCCchHHHhccccccccccccccCC-CCchhhcchhhhhccCCCCCCCCCcccccCchhhHHHHHHHHHhhhccceeeec
Confidence 0 0 00 00000000 0122222
Q ss_pred ----ccCCCCCCCceeeEEEEEEeCCcc--------------ccc-eEEecccceEEEeCCCCCcEEEEEEEEEcCCCC-
Q psy8771 641 ----WSKPTHSGENIISYELYWNDTYAK--------------AKH-HRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGE- 700 (904)
Q Consensus 641 ----w~~~~~~~~~~~~y~v~~~~~~~~--------------~~~-~~~~~~~~~~~l~~L~p~t~Y~v~V~a~~~~G~- 700 (904)
|...... ....+.......... +.. .....+..++.+.+|++.+.|.+.+.|+|..+.
T Consensus 731 r~~~~krk~l~--~~~n~t~~~~~~~~~~p~t~~~t~p~ei~e~~p~~~n~n~~~~vi~~Lrh~tlY~i~l~aCnh~~~~ 808 (1025)
T KOG4258|consen 731 RRPDRKRKSLD--DVENCTRLAPTRKAEEPTTPPTTAPTEIEEPKPRLENGNKESYVISGLRHFTLYRIDLQACNHATPK 808 (1025)
T ss_pred ccCcccccccc--cccceeeccccccccCCCCCCCCCCccccccCcccccccchhhhhhccccchhhhhhHhhhcccccc
Confidence 2111100 111111111110000 000 001244568899999999999999999998875
Q ss_pred ---CCCCCCeeEEecCCCCCCC-CCCcEEEec-CCCEEEEEecCCCCCCCCccEEEEEEEEEEccCCCCccEEEEec--C
Q psy8771 701 ---GATTPPIPVRTKQYVPGAP-PQNVSCEPL-SSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLK--N 773 (904)
Q Consensus 701 ---~~~s~~~~~~t~~~~p~~~-P~~l~~~~~-~~~~v~l~W~~~~~~~~~g~~~~Y~v~~~~~~~~~~~~~~~~~~--~ 773 (904)
|.. ..+..+|.+..-... |..+...-. ..+++.|+|.+| .+.||.+..|.|.|+..+............ .
T Consensus 809 ~~cS~a-~~v~~RT~~~~~aD~i~g~v~we~~~~~~~v~l~w~EP--~~pNGli~~Y~Vk~r~~~~et~v~cvsR~~~~k 885 (1025)
T KOG4258|consen 809 CGCSHA-AFVFARTMPTMGADDIPGPVTWECHIEMNSVILRWLEP--KEPNGLILNYEVKYRRNGDETHVECVSRMDYAK 885 (1025)
T ss_pred cccchh-hhhhhccccccccccCCCceeEecccCcceEEEecCCC--CCCCccEEEEEEEEeeccCcchhhhhhhhhhhh
Confidence 322 234555655443332 222222222 779999999999 579999999999999776543322111222 6
Q ss_pred cceEEecCCCCCceEEEEEEEeeCCCCCCCCCcEEe
Q psy8771 774 QTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITI 809 (904)
Q Consensus 774 ~~~~~i~~L~p~t~Y~~~V~a~~~~g~g~~s~~~~~ 809 (904)
...+.+.+|.+| .|.++|+|.+-+|.|.+.++..+
T Consensus 886 ~~gv~l~~l~~G-~y~~~vratSlaGng~~t~~~~~ 920 (1025)
T KOG4258|consen 886 AGGVYLKRLNPG-NYSVRVRATSLAGNGSWTESVIF 920 (1025)
T ss_pred cCceEEEecCCC-cEEEEEEEEeeccCCCCcCCcce
Confidence 678889999996 99999999999999998776654
No 12
>KOG4194|consensus
Probab=99.56 E-value=1.5e-13 Score=141.10 Aligned_cols=170 Identities=19% Similarity=0.289 Sum_probs=123.1
Q ss_pred CCCCCeEEcCCCCceEEecCCCeEEEEEEccCCCCeEEEeeCCccccCC--CCceee--cceEEEEeee--cCCeEEEEE
Q psy8771 101 RRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTP--DDKLPV--GRNVLTLDRV--TESENYTCI 174 (904)
Q Consensus 101 ~~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~k~~~~~~~~--~~~~~~--~~~~l~i~~l--~d~g~Y~c~ 174 (904)
+...|+|+..|.+ ++...|+.+.|.|.|.|.|.|+|.|.|+||..++. ..|+.+ ++..+.|.|+ +|.|.|+|+
T Consensus 609 V~~~PsFtktP~d-ltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~ 687 (873)
T KOG4194|consen 609 VNQAPSFTKTPED-LTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLHVMPEDDVFFITNVKIEDQGIYTCT 687 (873)
T ss_pred eeccCccccCccc-ceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhheeeecCCCCEEEEecccccccceeEEe
Confidence 4788999999999 99999999999999999999999999997776764 345554 7889999999 799999999
Q ss_pred EEecCcceEEEEEEEEEeecCCCCCCCCCCcceEEEeecCCeEEEEEeCCCccceEEEEEEEeCCCCCCeEE--eeccee
Q psy8771 175 AASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISEVTATSVRLDWTYPSETLLYYVIQYKPKAANTPYSE--ISGIIT 252 (904)
Q Consensus 175 a~n~~g~~~~~~~l~v~~~~~~~~~~P~~p~~l~~~~~~~~sv~l~W~~~~~~~~~y~v~~~~~~~~~~~~~--~~~~~~ 252 (904)
|.|..|+.++++.|.|... |.+..|..++ ...+ ...+.+++...+.+.+ -++.|......--+.. .....+
T Consensus 688 A~n~AG~isanAtL~V~e~--p~f~~PL~~~---~V~~-get~vlqC~a~~~~a~-pr~~W~k~d~pil~t~rh~f~d~d 760 (873)
T KOG4194|consen 688 AQNVAGQISANATLTVLET--PSFSIPLEDQ---LVVV-GETLVLQCLAEGAPAD-PRLEWFKEDKPILITERHTFPDGD 760 (873)
T ss_pred eeccccceeeceEEEEecC--Ccccccccce---EEEe-cceEEEEEecCCCCCC-ccccccCCCCceEEeecccCCCCC
Confidence 9999999999999999932 2223333332 2223 3456667766544443 2344444322211111 122333
Q ss_pred ceEEEcCCCCCCeEEEEEEEEcCCCC
Q psy8771 253 TYYTVRNLSPYTEYEFYIIAVNNLGR 278 (904)
Q Consensus 253 ~~~~i~~L~p~~~Y~~~v~a~n~~g~ 278 (904)
.-+++.+..-.+.+.|+|.-.|..|.
T Consensus 761 Qllvv~~~~~~daG~yTcem~~~~~~ 786 (873)
T KOG4194|consen 761 QLLVVKENLVEDAGIYTCEMSNTLGT 786 (873)
T ss_pred eEEEEEehhhhhcceEEEEEEeeccc
Confidence 55677777788889999999998775
No 13
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.46 E-value=6.6e-13 Score=108.87 Aligned_cols=86 Identities=23% Similarity=0.484 Sum_probs=72.9
Q ss_pred CCeEEcCCCCceEEecCCCeEEEEEEccCCCCeEEEeeCCccccCCCCceeecceEEEEeee--cCCeEEEEEEEecCcc
Q psy8771 104 PPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRNVLTLDRV--TESENYTCIAASVLGV 181 (904)
Q Consensus 104 ~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~l~i~~l--~d~g~Y~c~a~n~~g~ 181 (904)
||.|...|.+ ..+.+|+.+.|.|.+.|.|.|.|+|+|+ +..+....+....++.|.|.++ +|+|.|+|.|.|..|.
T Consensus 1 p~~~~~~p~~-~~~~~g~~v~l~C~~~g~P~p~v~W~k~-~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~ 78 (88)
T cd04968 1 PSIIVVFPKD-TYALKGQNVTLECFALGNPVPQIKWRKV-DGSMPSSAEISMSGAVLKIPNIQFEDEGTYECEAENIKGK 78 (88)
T ss_pred CCcEEECCCc-eEEeCCCcEEEEEEeeEeCCCEEEEEEC-CCcCCCccEEEEeCCEEEECCCCcccCEEEEEEEEECCCc
Confidence 4567777777 8899999999999999999999999998 4444444444567789999999 6999999999999999
Q ss_pred eEEEEEEEEE
Q psy8771 182 IETSTIVKVQ 191 (904)
Q Consensus 182 ~~~~~~l~v~ 191 (904)
..+.+.|.|.
T Consensus 79 ~~~~~~l~V~ 88 (88)
T cd04968 79 DTHQGRIYVQ 88 (88)
T ss_pred EEEEEEEEEC
Confidence 9999988773
No 14
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.45 E-value=5.1e-13 Score=108.32 Aligned_cols=82 Identities=26% Similarity=0.462 Sum_probs=73.2
Q ss_pred EEcCCCCceEEecCCCeEEEEEEccCCCCeEEEeeCCccccCCCCceeecceEEEEeee--cCCeEEEEEEEecCcceEE
Q psy8771 107 FSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRNVLTLDRV--TESENYTCIAASVLGVIET 184 (904)
Q Consensus 107 ~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~l~i~~l--~d~g~Y~c~a~n~~g~~~~ 184 (904)
|...|.+ ..+..|+++.|.|.+.|.|.|.+.|+|+ +..+....++...++.|.|.++ +|+|.|+|.|.|..|...+
T Consensus 2 ~~~~p~~-~~~~~G~~~~l~C~~~g~p~p~v~W~k~-g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~ 79 (85)
T cd05728 2 WLKVISD-TEADIGSSLRWECKASGNPRPAYRWLKN-GQPLASENRIEVEAGDLRITKLSLSDSGMYQCVAENKHGTIYA 79 (85)
T ss_pred ccccCCc-cEEcCCCcEEEEEEeeEeCCCEEEEEEC-CEECCCCCeEEEeCCEEEEeeCCHHHCEEEEEEEECCCCeEEE
Confidence 4566777 9999999999999999999999999999 7777777778888889999999 6999999999999999998
Q ss_pred EEEEEE
Q psy8771 185 STIVKV 190 (904)
Q Consensus 185 ~~~l~v 190 (904)
++.|.|
T Consensus 80 ~~~l~V 85 (85)
T cd05728 80 SAELAV 85 (85)
T ss_pred EEEEEC
Confidence 888765
No 15
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.44 E-value=3.9e-13 Score=104.48 Aligned_cols=70 Identities=20% Similarity=0.477 Sum_probs=62.4
Q ss_pred CCCeEEEEEEccCCCCeEEEeeCCccccCCCCceee-cceEEEEeee--cCCeEEEEEEEecCcceEEEEEEEE
Q psy8771 120 DSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPV-GRNVLTLDRV--TESENYTCIAASVLGVIETSTIVKV 190 (904)
Q Consensus 120 g~~~~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~-~~~~l~i~~l--~d~g~Y~c~a~n~~g~~~~~~~l~v 190 (904)
|+++.|+|.+.|.|.|+|+|+|+ +..+..+.|+.+ .+++|.|.++ +|+|.|+|.|.|..|...+++.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~-~~~l~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKG-TELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeC-CEecccCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 68899999999999999999999 666666677776 6789999999 6999999999999999999988865
No 16
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.44 E-value=5.5e-13 Score=102.41 Aligned_cols=68 Identities=59% Similarity=1.042 Sum_probs=60.4
Q ss_pred CCCeEEEEEEccCCCCeEEEeeCCccccCCCCceeecceEEEEeeecCCeEEEEEEEecCcceEEEEEE
Q psy8771 120 DSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRNVLTLDRVTESENYTCIAASVLGVIETSTIV 188 (904)
Q Consensus 120 g~~~~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~l~i~~l~d~g~Y~c~a~n~~g~~~~~~~l 188 (904)
|+.++|+|.+.|.|.|.|+|+|+ +..+....++......|.|.+++|+|.|+|.|.|..|..++++.|
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~-g~~l~~~~~~~~~~~~L~i~~~~d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKG-GEELTKEDEMPVGRNVLELTNIYESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEEC-CEECCCccceecCccEEEEeccccCeeEEEEEEeCCCEEEEEEEE
Confidence 67899999999999999999999 666766666766777899999999999999999999998888766
No 17
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.42 E-value=1.5e-12 Score=107.66 Aligned_cols=84 Identities=20% Similarity=0.416 Sum_probs=73.0
Q ss_pred CCCeEEcCCCCceEEecCCCeEEEEEEccCCCCeEEEeeCCccccCCCCceee----cceEEEEeee--cCCeEEEEEEE
Q psy8771 103 VPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPV----GRNVLTLDRV--TESENYTCIAA 176 (904)
Q Consensus 103 ~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~----~~~~l~i~~l--~d~g~Y~c~a~ 176 (904)
.||+|+..|.+ +.+.+|+.+.|.|.+.|.|.|.+.|+|+ +..+..+.++.+ ..++|.|.++ +|+|.|+|.|.
T Consensus 2 ~~~~~~~~p~~-~~~~~G~~~~L~C~~~g~P~p~v~W~k~-g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~ 79 (92)
T cd05747 2 LPATILTKPRS-LTVSEGESARFSCDVDGEPAPTVTWMRE-GQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVE 79 (92)
T ss_pred CCCcccccCcc-EEEeCCCcEEEEEEEeecCCCEEEEEEC-CEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEE
Confidence 47899999988 9999999999999999999999999999 666666666554 2468999999 69999999999
Q ss_pred ecCcceEEEEEE
Q psy8771 177 SVLGVIETSTIV 188 (904)
Q Consensus 177 n~~g~~~~~~~l 188 (904)
|..|..+....|
T Consensus 80 N~~G~~~~~~~l 91 (92)
T cd05747 80 NSEGKQEAQFTL 91 (92)
T ss_pred cCCCCEeEEEEe
Confidence 999998887665
No 18
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.40 E-value=1.4e-12 Score=102.66 Aligned_cols=71 Identities=27% Similarity=0.563 Sum_probs=61.6
Q ss_pred cCCCeEEEEEEccCCCCeEEEeeCCccccCCCCcee-ecceEEEEeee--cCCeEEEEEEEecCcceEEEEEEEE
Q psy8771 119 LDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLP-VGRNVLTLDRV--TESENYTCIAASVLGVIETSTIVKV 190 (904)
Q Consensus 119 ~g~~~~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~-~~~~~l~i~~l--~d~g~Y~c~a~n~~g~~~~~~~l~v 190 (904)
+|+.+.|.|.+.|.|.|.|+|+|+ +..+....++. ..++.|.|.++ +|+|.|+|.|.|..|..+..+.|.|
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~-g~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKG-GSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEEC-CEECCCCCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 589999999999999999999999 66666555544 36779999999 6999999999999999999888865
No 19
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.38 E-value=2.3e-12 Score=101.95 Aligned_cols=74 Identities=31% Similarity=0.629 Sum_probs=61.9
Q ss_pred EEcCCCCceEEecCCCeEEEEEEccCCCC-eEEEeeCCccccCCCCceeecceEEEEeeecCCeEEEEEEEecCcceEE
Q psy8771 107 FSIPPPALLEVMLDSPLNLSCVAVGSPMP-FVKWRKGQNIELTPDDKLPVGRNVLTLDRVTESENYTCIAASVLGVIET 184 (904)
Q Consensus 107 ~~~~~~~~~~~~~g~~~~l~C~~~g~p~p-~i~W~k~~~~~~~~~~~~~~~~~~l~i~~l~d~g~Y~c~a~n~~g~~~~ 184 (904)
|...|.+ +.+.+|+++.|.|.+.|.|.| +|+|+|+ +..+.. +.....+.|.|.++.|.|.|+|.|.|..|...+
T Consensus 1 f~~~P~~-~~v~~G~~v~l~C~a~G~P~P~~I~W~k~-g~~l~~--~~~~~~s~L~i~~~~d~g~Y~C~A~N~~G~~~s 75 (81)
T cd05749 1 FTVEPED-LSVTANTPFNLTCQAVGPPEPVEILWWQG-GSPLGD--PPAPSPSVLNVPGLNETSKFSCEAHNAKGVTTS 75 (81)
T ss_pred CcCCCCc-eEEcCCCCEEEEEEeeeecCCeEEEEEEC-CEECCC--CCCCCCCEEEEccccCCeEEEEEEEeccCcEEe
Confidence 3456677 999999999999999999999 7999999 666643 233456789999999999999999999997554
No 20
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.37 E-value=4.3e-12 Score=103.23 Aligned_cols=77 Identities=23% Similarity=0.395 Sum_probs=64.3
Q ss_pred CCCeEEEEEEccCCCCeEEEeeCCccccCCC-Cceeec-----c---eEEEEeee--cCCeEEEEEEEecCcceEEEEEE
Q psy8771 120 DSPLNLSCVAVGSPMPFVKWRKGQNIELTPD-DKLPVG-----R---NVLTLDRV--TESENYTCIAASVLGVIETSTIV 188 (904)
Q Consensus 120 g~~~~l~C~~~g~p~p~i~W~k~~~~~~~~~-~~~~~~-----~---~~l~i~~l--~d~g~Y~c~a~n~~g~~~~~~~l 188 (904)
|+.++|.|.+.|.|.+.|.|+|+ +..+... .|+.+. . ..|.|.++ +|.|.|+|.|.|..|..++.+.|
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~-~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L 79 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKE-DRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQL 79 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeC-CEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEE
Confidence 78999999999999999999999 6556432 354431 1 57889888 69999999999999999999999
Q ss_pred EEEeecCCCCCCCCCC
Q psy8771 189 KVQCKYAPLLTLPVAP 204 (904)
Q Consensus 189 ~v~~~~~~~~~~P~~p 204 (904)
.|. .+|.+|
T Consensus 80 ~V~-------~~P~~P 88 (88)
T cd05735 80 TVQ-------EPPDPP 88 (88)
T ss_pred EEe-------CCCCCC
Confidence 999 777776
No 21
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.37 E-value=2.3e-12 Score=100.72 Aligned_cols=67 Identities=25% Similarity=0.491 Sum_probs=55.7
Q ss_pred eEEEEEEccCCCCeEEEeeCCccccCC-CCceeec-c--e--EEEEeee--cCCeEEEEEEEecCcceEEEEEEEE
Q psy8771 123 LNLSCVAVGSPMPFVKWRKGQNIELTP-DDKLPVG-R--N--VLTLDRV--TESENYTCIAASVLGVIETSTIVKV 190 (904)
Q Consensus 123 ~~l~C~~~g~p~p~i~W~k~~~~~~~~-~~~~~~~-~--~--~l~i~~l--~d~g~Y~c~a~n~~g~~~~~~~l~v 190 (904)
+.|+|.+.|.|.|.|+|+|+ +..+.. ..|+.+. + + .|.|.++ +|+|.|+|.|.|..|+.++++.|.|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~-~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKE-NESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEeEecCCEEEEEEC-CEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 57999999999999999999 555543 4566552 2 2 6999999 6999999999999999999998875
No 22
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.36 E-value=5.5e-12 Score=101.97 Aligned_cols=76 Identities=24% Similarity=0.427 Sum_probs=64.7
Q ss_pred ceEEecCCCeEEEEEEccCCCCeEEEeeCCccccCC-CCceee----cceEEEEeee--cCCeEEEEEEEecCcceEEEE
Q psy8771 114 LLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTP-DDKLPV----GRNVLTLDRV--TESENYTCIAASVLGVIETST 186 (904)
Q Consensus 114 ~~~~~~g~~~~l~C~~~g~p~p~i~W~k~~~~~~~~-~~~~~~----~~~~l~i~~l--~d~g~Y~c~a~n~~g~~~~~~ 186 (904)
.+.+.+|+.+.|.|.+.|.|.|.|.|+|+ +..+.. ..|+.+ ....|.|.++ +|+|.|+|.|.|..|+..+.+
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~-~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~ 82 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPTVTWSRG-DKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASL 82 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCeEEEEEC-CEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEE
Confidence 48899999999999999999999999999 666654 345554 2468999999 699999999999999988888
Q ss_pred EEEE
Q psy8771 187 IVKV 190 (904)
Q Consensus 187 ~l~v 190 (904)
.|.|
T Consensus 83 ~l~V 86 (86)
T cd05894 83 FVKV 86 (86)
T ss_pred EEEC
Confidence 7764
No 23
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.35 E-value=4e-12 Score=99.06 Aligned_cols=67 Identities=22% Similarity=0.429 Sum_probs=56.2
Q ss_pred eEEEEEEccCCCCeEEEeeCCccccC-CCCceee--c-ce--EEEEeee--cCCeEEEEEEEecCcceEEEEEEEE
Q psy8771 123 LNLSCVAVGSPMPFVKWRKGQNIELT-PDDKLPV--G-RN--VLTLDRV--TESENYTCIAASVLGVIETSTIVKV 190 (904)
Q Consensus 123 ~~l~C~~~g~p~p~i~W~k~~~~~~~-~~~~~~~--~-~~--~l~i~~l--~d~g~Y~c~a~n~~g~~~~~~~l~v 190 (904)
+.|+|.+.|.|.|.|+|+|+ +..+. ...|+.+ + .+ +|.|.++ +|+|.|+|.|.|..|.....+.|.|
T Consensus 1 v~l~C~v~G~P~P~i~W~k~-~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRN-NEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEEEecCCCeEEEEEC-CEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 57999999999999999999 66665 3456654 2 22 7999999 6999999999999999999998875
No 24
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.35 E-value=5.2e-12 Score=99.99 Aligned_cols=70 Identities=23% Similarity=0.421 Sum_probs=61.1
Q ss_pred CCCeEEEEEEccCCCCeEEEeeCCccccCCC---CceeecceEEEEeee--cCCeEEEEEEEecCcceEEEEEEEE
Q psy8771 120 DSPLNLSCVAVGSPMPFVKWRKGQNIELTPD---DKLPVGRNVLTLDRV--TESENYTCIAASVLGVIETSTIVKV 190 (904)
Q Consensus 120 g~~~~l~C~~~g~p~p~i~W~k~~~~~~~~~---~~~~~~~~~l~i~~l--~d~g~Y~c~a~n~~g~~~~~~~l~v 190 (904)
|+.+.|.|.+.|.|.|.|+|+|+ +..+... .++...++.|.|.++ +|+|.|+|.|.|..|...+.+.|.|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~-g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSIN-GAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEEC-CEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 68899999999999999999999 6665432 356667889999999 6999999999999999999988876
No 25
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.34 E-value=8.7e-12 Score=104.40 Aligned_cols=86 Identities=27% Similarity=0.526 Sum_probs=68.8
Q ss_pred CCCeEEcCCCCceEEecCCCeEEEEEEccCCCCeEEEeeCC-ccccCC-----CCceee----cceEEEEeee--cCCeE
Q psy8771 103 VPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQ-NIELTP-----DDKLPV----GRNVLTLDRV--TESEN 170 (904)
Q Consensus 103 ~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~k~~-~~~~~~-----~~~~~~----~~~~l~i~~l--~d~g~ 170 (904)
++|+|.. +.+ +.+.+|+.++|.|.+.|.|.|.|.|+|+. +..+.. +.|+.+ ...+|.|.++ +|+|.
T Consensus 1 ~~p~i~~-~~~-~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~ 78 (98)
T cd05870 1 VQPHIIQ-LKN-ETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGR 78 (98)
T ss_pred CCCEEEe-ecc-EEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEE
Confidence 3678865 556 99999999999999999999999999952 333321 235554 2458999999 69999
Q ss_pred EEEEEEecCcceEEEEEEEE
Q psy8771 171 YTCIAASVLGVIETSTIVKV 190 (904)
Q Consensus 171 Y~c~a~n~~g~~~~~~~l~v 190 (904)
|+|.|.|..|....++.|.|
T Consensus 79 Y~C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 79 YDCEAASRIGGHQKSMYLDI 98 (98)
T ss_pred EEEEEeccCCcceeEEEEeC
Confidence 99999999999888888764
No 26
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.34 E-value=1e-11 Score=102.12 Aligned_cols=81 Identities=26% Similarity=0.363 Sum_probs=66.2
Q ss_pred EcCCCCceEEecCCCeEEEEEEccCCCCeEEEeeCCccccCCCCcee----ecceEEEEeee--cCCeEEEEEEEecCcc
Q psy8771 108 SIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLP----VGRNVLTLDRV--TESENYTCIAASVLGV 181 (904)
Q Consensus 108 ~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~----~~~~~l~i~~l--~d~g~Y~c~a~n~~g~ 181 (904)
..+|.+ ..+.+|+.+.|.|.+.|.|.|.|+|+++ +..+....+.. .....|.|.++ +|.|.|+|.|.|..|.
T Consensus 4 v~~p~~-~~v~~G~~v~l~C~~~G~P~p~v~W~~~-g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~ 81 (90)
T cd04972 4 VDGPNA-TVVYEGGTATIRCTAEGSPLPKVEWIIA-GLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQ 81 (90)
T ss_pred ccCCcC-EEEcCCCcEEEEEEEEEcCCCeEEEEEC-CEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCc
Confidence 445566 7799999999999999999999999999 65554443322 23458999999 6899999999999999
Q ss_pred eEEEEEEEE
Q psy8771 182 IETSTIVKV 190 (904)
Q Consensus 182 ~~~~~~l~v 190 (904)
..+.+.|.|
T Consensus 82 ~~~~~~L~v 90 (90)
T cd04972 82 ANVSVQVTV 90 (90)
T ss_pred eeEEEEEeC
Confidence 999888764
No 27
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.34 E-value=6.3e-12 Score=97.79 Aligned_cols=68 Identities=25% Similarity=0.506 Sum_probs=57.7
Q ss_pred CeEEEEEEccCCCCeEEEeeCCccccCCCCceee-cceEEEEeee--cCCeEEEEEEEecCcceEEEEEEEE
Q psy8771 122 PLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPV-GRNVLTLDRV--TESENYTCIAASVLGVIETSTIVKV 190 (904)
Q Consensus 122 ~~~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~-~~~~l~i~~l--~d~g~Y~c~a~n~~g~~~~~~~l~v 190 (904)
++.|+|.+.|.|.|.|+|+|+ +..+....++.+ .++.|.|.++ +|+|.|+|.|.|..|+.++++.|.|
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~-g~~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKN-GDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEEC-CeECCCCCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 478999999999999999999 555655555554 5677899898 6999999999999999999988865
No 28
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.33 E-value=7e-12 Score=98.89 Aligned_cols=70 Identities=23% Similarity=0.439 Sum_probs=59.5
Q ss_pred CCCeEEEEEEccCCCCeEEEeeCCccccCCC---CceeecceEEEEeee--cCCeEEEEEEEecCcceEEEEEEEE
Q psy8771 120 DSPLNLSCVAVGSPMPFVKWRKGQNIELTPD---DKLPVGRNVLTLDRV--TESENYTCIAASVLGVIETSTIVKV 190 (904)
Q Consensus 120 g~~~~l~C~~~g~p~p~i~W~k~~~~~~~~~---~~~~~~~~~l~i~~l--~d~g~Y~c~a~n~~g~~~~~~~l~v 190 (904)
|+++.|.|.+.|.|.|+|+|+|+ +..+... .....+++.|.|.++ +|+|.|+|.|.|..|...+++.|.|
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~-g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 75 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTN-GVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV 75 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEEC-CEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence 68999999999999999999999 7666432 223345668999998 6999999999999999999999887
No 29
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.33 E-value=9.7e-12 Score=102.67 Aligned_cols=75 Identities=29% Similarity=0.468 Sum_probs=63.7
Q ss_pred eEEecCCCeEEEEEEccCCCCeEEEeeCCccccCCCCceee--c---ceEEEEeee--cCCeEEEEEEEecCcceEEEEE
Q psy8771 115 LEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPV--G---RNVLTLDRV--TESENYTCIAASVLGVIETSTI 187 (904)
Q Consensus 115 ~~~~~g~~~~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~--~---~~~l~i~~l--~d~g~Y~c~a~n~~g~~~~~~~ 187 (904)
+++.+|+.+.|.|.+.|.|.|.|.|+|+ +..+....++.+ . ..+|.|.++ +|+|.|+|.|.|..|.......
T Consensus 11 v~v~~G~~v~L~C~v~G~P~p~v~W~k~-g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 89 (92)
T cd05737 11 VTIMEGKTLNLTCTVFGDPDPEVSWLKN-DQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDVT 89 (92)
T ss_pred EEEeCCCcEEEEEEEEecCCCeEEEEEC-CEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEEEE
Confidence 8999999999999999999999999999 767766555443 2 347999999 6999999999999999888776
Q ss_pred EEE
Q psy8771 188 VKV 190 (904)
Q Consensus 188 l~v 190 (904)
|.|
T Consensus 90 v~v 92 (92)
T cd05737 90 VSV 92 (92)
T ss_pred EeC
Confidence 654
No 30
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.32 E-value=1.3e-11 Score=103.13 Aligned_cols=85 Identities=25% Similarity=0.537 Sum_probs=68.2
Q ss_pred CCeEEcCCCCceEEecCCCeEEEEEEccCCCCeEEEeeCCccccCCC-----Cceee----cceEEEEeee--cCCeEEE
Q psy8771 104 PPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPD-----DKLPV----GRNVLTLDRV--TESENYT 172 (904)
Q Consensus 104 ~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~k~~~~~~~~~-----~~~~~----~~~~l~i~~l--~d~g~Y~ 172 (904)
.|+|...+.. ..+..|+.++|.|.+.|.|.|.|+|+++ +..+... .++.+ ..+.|.|.++ +|+|.|+
T Consensus 2 ~p~i~~~~~~-~~~~~g~~v~l~C~~~G~P~P~v~W~~~-~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~ 79 (97)
T cd05869 2 KPKITYVENQ-TAMELEEQITLTCEASGDPIPSITWRTS-TRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYL 79 (97)
T ss_pred CceEEEccCc-eEEEcCCCEEEEEEeeEeCCCEEEEEEC-CccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEE
Confidence 5778777776 6666789999999999999999999998 5544322 23332 2358999998 6999999
Q ss_pred EEEEecCcceEEEEEEEE
Q psy8771 173 CIAASVLGVIETSTIVKV 190 (904)
Q Consensus 173 c~a~n~~g~~~~~~~l~v 190 (904)
|.|.|..|..++++.|.|
T Consensus 80 C~A~N~~G~~~~~~~l~v 97 (97)
T cd05869 80 CTASNTIGQDSQSMYLEV 97 (97)
T ss_pred EEEecCCCCeeEEEEEEC
Confidence 999999999999888875
No 31
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.32 E-value=1.2e-11 Score=101.57 Aligned_cols=83 Identities=22% Similarity=0.538 Sum_probs=65.5
Q ss_pred CCeEEcCCCCceEEecC---CCeEEEEEEccCCCCeEEEeeCCccccC-CCCceeecceEEEEeee---cCCeEEEEEEE
Q psy8771 104 PPQFSIPPPALLEVMLD---SPLNLSCVAVGSPMPFVKWRKGQNIELT-PDDKLPVGRNVLTLDRV---TESENYTCIAA 176 (904)
Q Consensus 104 ~P~~~~~~~~~~~~~~g---~~~~l~C~~~g~p~p~i~W~k~~~~~~~-~~~~~~~~~~~l~i~~l---~d~g~Y~c~a~ 176 (904)
+|.|...|.+ +.+.++ ..+.|.|.+.|.|.|.|+|+|+ +..+. ...++.+.++.|.|.++ +|+|.|+|.|.
T Consensus 1 ~P~f~~~P~~-~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~-~~~i~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~ 78 (93)
T cd05849 1 GPVFEEQPID-TIYPEESTEGKVSVNCRARANPFPIYKWRKN-NLDIDLTNDRYSMVGGNLVINNPDKYKDAGRYVCIVS 78 (93)
T ss_pred CCEEEECCCC-EEecCCccCCeEEEeCcCccCCCCEEEEEEC-CEEccCCCCeEEEECCEEEECcCCcCCCCEEEEEEEE
Confidence 4778888887 655544 4899999999999999999999 55553 34567677889999886 59999999999
Q ss_pred ecCcceEE-EEEE
Q psy8771 177 SVLGVIET-STIV 188 (904)
Q Consensus 177 n~~g~~~~-~~~l 188 (904)
|..|...+ .+.|
T Consensus 79 N~~G~~~s~~a~l 91 (93)
T cd05849 79 NIYGKVRSREATL 91 (93)
T ss_pred eCcceEEEccEEE
Confidence 99998644 4443
No 32
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.32 E-value=1.6e-11 Score=102.50 Aligned_cols=86 Identities=27% Similarity=0.450 Sum_probs=69.9
Q ss_pred CCeEEcCCC--CceEEecCCCeEEEEEEccCCCCeEEEeeCCccccCCC-Cceee--cceEEEEeee--cCCeEEEEEEE
Q psy8771 104 PPQFSIPPP--ALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPD-DKLPV--GRNVLTLDRV--TESENYTCIAA 176 (904)
Q Consensus 104 ~P~~~~~~~--~~~~~~~g~~~~l~C~~~g~p~p~i~W~k~~~~~~~~~-~~~~~--~~~~l~i~~l--~d~g~Y~c~a~ 176 (904)
||.|...+. + +.+..|+.+.|.|.+.|.|.|.|.|+|+ +..+... .++.. ....|.|.++ +|+|.|+|.|.
T Consensus 1 pp~i~~~~~~~~-~~~~~G~~v~L~C~~~g~P~p~v~W~k~-g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 78 (95)
T cd05730 1 PPTIRARQSEVN-ATANLGQSVTLACDADGFPEPTMTWTKD-GEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAE 78 (95)
T ss_pred CCccccCCcccc-eEEeCCCCEEEEEeccEeCCCEEEEEEC-CEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEE
Confidence 455554432 3 6889999999999999999999999999 6666543 44443 3457999999 69999999999
Q ss_pred ecCcceEEEEEEEEE
Q psy8771 177 SVLGVIETSTIVKVQ 191 (904)
Q Consensus 177 n~~g~~~~~~~l~v~ 191 (904)
|..|..+..+.|.|.
T Consensus 79 N~~G~~~~~~~L~V~ 93 (95)
T cd05730 79 NKAGEQEAEIHLKVF 93 (95)
T ss_pred cCCCeEEEEEEEEEE
Confidence 999999999999886
No 33
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.31 E-value=1.1e-11 Score=102.69 Aligned_cols=84 Identities=30% Similarity=0.568 Sum_probs=74.0
Q ss_pred CeEEcCCCCceEEecCCCeEEEEEEccCCCCeEEEeeCCccccCCCCceee----cceEEEEeee--cCCeEEEEEEEec
Q psy8771 105 PQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPV----GRNVLTLDRV--TESENYTCIAASV 178 (904)
Q Consensus 105 P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~----~~~~l~i~~l--~d~g~Y~c~a~n~ 178 (904)
|.|...+.+ +.+.+|+++.|.|.+.|.|.|.|.|+++ +..+..+.++.+ ....|.|.++ +|+|.|+|.|.|.
T Consensus 1 P~~~~~~~~-~~v~~G~~~~l~c~~~~~p~~~v~W~~~-~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~ 78 (90)
T PF07679_consen 1 PVFTKKPKD-VTVKEGESVTLECEVSGNPPPTVTWYKN-GRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNS 78 (90)
T ss_dssp EEEEEESSE-EEEETTSEEEEEEEEEESSSSEEEEEET-TEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEET
T ss_pred CEEEEecCC-EEEeCCCEEEEEEEEEeCCCCccccccc-ccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEEC
Confidence 678888877 9999999999999999999999999999 777776666654 4668999999 6999999999999
Q ss_pred CcceEEEEEEEE
Q psy8771 179 LGVIETSTIVKV 190 (904)
Q Consensus 179 ~g~~~~~~~l~v 190 (904)
.|..+..+.|.|
T Consensus 79 ~g~~~~~~~l~V 90 (90)
T PF07679_consen 79 SGEATASVNLTV 90 (90)
T ss_dssp TEEEEEEEEEEE
T ss_pred CCEEEEEEEEEC
Confidence 999998888875
No 34
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.31 E-value=2.6e-11 Score=100.70 Aligned_cols=76 Identities=25% Similarity=0.267 Sum_probs=65.4
Q ss_pred eEEecCCCeEEEEEEcc-CCCCeEEEeeCCccccCCCCcee-e-c-------ceEEEEeee--cCCeEEEEEEEecCcce
Q psy8771 115 LEVMLDSPLNLSCVAVG-SPMPFVKWRKGQNIELTPDDKLP-V-G-------RNVLTLDRV--TESENYTCIAASVLGVI 182 (904)
Q Consensus 115 ~~~~~g~~~~l~C~~~g-~p~p~i~W~k~~~~~~~~~~~~~-~-~-------~~~l~i~~l--~d~g~Y~c~a~n~~g~~ 182 (904)
+.+.+|+++.|+|.+.| .|.|.|.|+|| |..+....+.. . . ...|.|.++ +|+|.|+|.|.|..|..
T Consensus 13 ~~v~~G~~v~L~c~v~g~~P~p~v~W~Kd-g~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~ 91 (101)
T cd04975 13 IFVNLGENLNLVVEVEAYPPPPHINWTYD-NRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASK 91 (101)
T ss_pred EEEECCCCEEEEEEEEecCCCCccEEEeC-CeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccE
Confidence 89999999999999999 99999999999 77776543322 1 2 367999999 69999999999999999
Q ss_pred EEEEEEEEE
Q psy8771 183 ETSTIVKVQ 191 (904)
Q Consensus 183 ~~~~~l~v~ 191 (904)
+..+.|.|.
T Consensus 92 ~~t~~L~V~ 100 (101)
T cd04975 92 SLTFELYVN 100 (101)
T ss_pred EEEEEEEEE
Confidence 999888876
No 35
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.30 E-value=2.7e-11 Score=99.75 Aligned_cols=81 Identities=22% Similarity=0.408 Sum_probs=64.2
Q ss_pred cCCCCceEEecCCCeEEEEEEccCCC-CeEEEeeCCccccCC-CCceee--c---ceEEEEeee--cCCeEEEEEEEecC
Q psy8771 109 IPPPALLEVMLDSPLNLSCVAVGSPM-PFVKWRKGQNIELTP-DDKLPV--G---RNVLTLDRV--TESENYTCIAASVL 179 (904)
Q Consensus 109 ~~~~~~~~~~~g~~~~l~C~~~g~p~-p~i~W~k~~~~~~~~-~~~~~~--~---~~~l~i~~l--~d~g~Y~c~a~n~~ 179 (904)
..|.+ ..+..|+.++|.|.+.|.|. |.|+|+++++..+.. +.|+.+ + .+.|.|.++ +|+|.|+|.|.|..
T Consensus 5 ~~p~~-~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~ 83 (96)
T cd05865 5 IVPSQ-GEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNED 83 (96)
T ss_pred EeCCc-cEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCC
Confidence 34555 78899999999999999995 799999832655544 445443 2 258999999 69999999999997
Q ss_pred -cceEEEEEEEE
Q psy8771 180 -GVIETSTIVKV 190 (904)
Q Consensus 180 -g~~~~~~~l~v 190 (904)
|..++++.|.|
T Consensus 84 ~g~~~~s~~l~v 95 (96)
T cd05865 84 EGESEATVNVKI 95 (96)
T ss_pred CCcEEEEEEEEE
Confidence 88888888876
No 36
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.29 E-value=5.8e-10 Score=115.80 Aligned_cols=219 Identities=12% Similarity=0.141 Sum_probs=128.7
Q ss_pred cCCceEEEEeCCCCC--------CCc-eecccccccccceEEEEeeeccCCeeeeeeeeccCCCCCCCCeEEcCCCCceE
Q psy8771 46 SSSTMVIQWDEPETP--------NGQ-ITHPPTRAARSHARLAAQSVLRRGRLAHAVRQVADPVRRVPPQFSIPPPALLE 116 (904)
Q Consensus 46 ~~~s~~v~W~~~~~~--------~g~-i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~~~~~~~~P~~~~~~~~~~~ 116 (904)
+.+.++|.|.+...+ +|. +........|.+...|...+........+.+.|.. ..+|.|...+.. ..
T Consensus 57 g~p~~~i~W~K~g~~~~~~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~L~V~~---~~~~~~~~~~~~-~~ 132 (326)
T PHA02785 57 GYNILDILWEKRGADNDRIIPIDNGSNMLILNPTQSDSGIYICITKNETYCDMMSLNLTIVS---VSESNIDLISYP-QI 132 (326)
T ss_pred CCCCceEEEEECCCccceEEEccCCceEEEcccCcccCeEEEEEEECCCcceEEEEEEEEEe---cCCCccceeecc-ce
Confidence 556788999886432 343 44333444566666677766554444455555542 222333323334 56
Q ss_pred EecCCCeEEEEE-----EccCCCCeEEEeeCCccccCCCCceee-cceEEEEeee--cCCeEEEEEEEecCcceEEE---
Q psy8771 117 VMLDSPLNLSCV-----AVGSPMPFVKWRKGQNIELTPDDKLPV-GRNVLTLDRV--TESENYTCIAASVLGVIETS--- 185 (904)
Q Consensus 117 ~~~g~~~~l~C~-----~~g~p~p~i~W~k~~~~~~~~~~~~~~-~~~~l~i~~l--~d~g~Y~c~a~n~~g~~~~~--- 185 (904)
+.+|..+.|.|. ..+.|.+.|+|+|+ .. + .+.|+.. .++.|.|.++ +|+|.|+|.|.|..|.....
T Consensus 133 ~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~-~~-~-~~~r~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~ 209 (326)
T PHA02785 133 VNERSTGEMVCPNINAFIASNVNADIIWSGH-RR-L-RNKRLKQRTPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTR 209 (326)
T ss_pred ecccCcEEEECCChhhcccCCCCceEEEccC-Cc-c-CCcceEecCCCeEEEeecChhhCeEEEEEEEeccCCEEEeEEE
Confidence 779999999997 34789999999987 42 2 3345443 4678999999 69999999999998875433
Q ss_pred -EEEEEEeecCCCCCCC--CCCcceEEEeecCCeEEEEEeCCCccce-EEEEEEEeCCCC---------CCeEEeec---
Q psy8771 186 -TIVKVQCKYAPLLTLP--VAPLDVKISEVTATSVRLDWTYPSETLL-YYVIQYKPKAAN---------TPYSEISG--- 249 (904)
Q Consensus 186 -~~l~v~~~~~~~~~~P--~~p~~l~~~~~~~~sv~l~W~~~~~~~~-~y~v~~~~~~~~---------~~~~~~~~--- 249 (904)
+.|.|.... .+| ..|..+.+. ....++|.+...+.+.. .-.+.|..++.. ..+.....
T Consensus 210 ~v~l~V~~~~----~pp~~~~p~~~~~~--~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~ 283 (326)
T PHA02785 210 IVKLEVRDRI----IPPTMQLPEGVVTS--IGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYT 283 (326)
T ss_pred EEEEEEeccC----CCceecCCCcEEec--CCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccc
Confidence 344444111 111 123333332 23446666665422211 013444433210 01111000
Q ss_pred -----ceeceEEEcCCCCCCeEEEEEEEEcCCC
Q psy8771 250 -----IITTYYTVRNLSPYTEYEFYIIAVNNLG 277 (904)
Q Consensus 250 -----~~~~~~~i~~L~p~~~Y~~~v~a~n~~g 277 (904)
.....|+|.+++..+.+.|+|.|.|..|
T Consensus 284 ~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~ 316 (326)
T PHA02785 284 TDKRRVITSRLNINPVKEEDATTFTCMAFTIPS 316 (326)
T ss_pred cccceeeeEEEEECCcchhcCeeeEEEEEeccC
Confidence 1135799999999999999999999874
No 37
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.28 E-value=2.6e-11 Score=100.08 Aligned_cols=78 Identities=24% Similarity=0.485 Sum_probs=63.6
Q ss_pred CeEEcCCCCceEEe---cCCCeEEEEEEccCCCCeEEEeeCCccccCC--CCceeecceEEEEeee---cCCeEEEEEEE
Q psy8771 105 PQFSIPPPALLEVM---LDSPLNLSCVAVGSPMPFVKWRKGQNIELTP--DDKLPVGRNVLTLDRV---TESENYTCIAA 176 (904)
Q Consensus 105 P~~~~~~~~~~~~~---~g~~~~l~C~~~g~p~p~i~W~k~~~~~~~~--~~~~~~~~~~l~i~~l---~d~g~Y~c~a~ 176 (904)
|.|+..|.+ +.+. +|++++|.|.+.|.|.|.|+|+|+ +..+.. ..++...+++|.|.++ +|+|.|+|.|.
T Consensus 2 P~f~~~p~~-~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~-g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~ 79 (94)
T cd05848 2 PVFVQEPDD-AIFPTDSDEKKVILNCEARGNPVPTYRWLRN-GTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLAT 79 (94)
T ss_pred CeeEECCCc-EEccCCCCCCEEEEEEEeeecCCCEEEEEEC-CeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEE
Confidence 677888887 6554 478999999999999999999999 666643 2355567789999886 59999999999
Q ss_pred ecCcceEE
Q psy8771 177 SVLGVIET 184 (904)
Q Consensus 177 n~~g~~~~ 184 (904)
|..|...+
T Consensus 80 N~~G~~~S 87 (94)
T cd05848 80 NSIGSILS 87 (94)
T ss_pred cCCCeEEe
Confidence 99998644
No 38
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.28 E-value=1.8e-11 Score=95.22 Aligned_cols=67 Identities=33% Similarity=0.555 Sum_probs=55.5
Q ss_pred eEEEEEEccCCCCeEEEeeCCccccCCC-CceeecceEEEEeee--cCCeEEEEEEEecCcceEEEEEEEE
Q psy8771 123 LNLSCVAVGSPMPFVKWRKGQNIELTPD-DKLPVGRNVLTLDRV--TESENYTCIAASVLGVIETSTIVKV 190 (904)
Q Consensus 123 ~~l~C~~~g~p~p~i~W~k~~~~~~~~~-~~~~~~~~~l~i~~l--~d~g~Y~c~a~n~~g~~~~~~~l~v 190 (904)
+.|+|.+.|.|.|.|.|+|+ +..+... .+.....+.|.|.++ +|.|.|+|.|.|..|..+..+.|.|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~-~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRI-DGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEEC-CcCCCCCceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 47999999999999999999 4444433 233346789999999 6999999999999999988888876
No 39
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.27 E-value=3.9e-11 Score=99.13 Aligned_cols=82 Identities=21% Similarity=0.459 Sum_probs=65.4
Q ss_pred CeEEcCCCCceEEecC---CCeEEEEEEccCCCCeEEEeeCCccccC--CCCceeecceEEEEeee---cCCeEEEEEEE
Q psy8771 105 PQFSIPPPALLEVMLD---SPLNLSCVAVGSPMPFVKWRKGQNIELT--PDDKLPVGRNVLTLDRV---TESENYTCIAA 176 (904)
Q Consensus 105 P~~~~~~~~~~~~~~g---~~~~l~C~~~g~p~p~i~W~k~~~~~~~--~~~~~~~~~~~l~i~~l---~d~g~Y~c~a~ 176 (904)
|.|...|.+ +.+.+| +.++|.|.+.|.|.|.|+|+++ +..+. ...++.+.++.|.|.++ +|+|.|+|.|.
T Consensus 2 P~f~~~P~~-~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~-g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~ 79 (94)
T cd05850 2 PVFEEQPSS-LLFPEGSPEEKVTLGCRARASPPATYRWKMN-GTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAI 79 (94)
T ss_pred CeeEECCCC-EEecCCCCCCeEEEEeEceeCCCCEEEEEEC-CEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEE
Confidence 667788887 766565 5799999999999999999999 66664 23466667789999875 59999999999
Q ss_pred ecCcceEE-EEEE
Q psy8771 177 SVLGVIET-STIV 188 (904)
Q Consensus 177 n~~g~~~~-~~~l 188 (904)
|..|...+ .+.|
T Consensus 80 N~~G~~~s~~a~l 92 (94)
T cd05850 80 NRCGTVVSREANL 92 (94)
T ss_pred cCcCcEEEEEEEE
Confidence 99998654 4443
No 40
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.27 E-value=2.2e-11 Score=95.54 Aligned_cols=70 Identities=23% Similarity=0.498 Sum_probs=61.1
Q ss_pred CCCeEEEEEEccCCCCeEEEeeCCccccCCCCceee-cceEEEEeee--cCCeEEEEEEEecCcceEEEEEEEE
Q psy8771 120 DSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPV-GRNVLTLDRV--TESENYTCIAASVLGVIETSTIVKV 190 (904)
Q Consensus 120 g~~~~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~-~~~~l~i~~l--~d~g~Y~c~a~n~~g~~~~~~~l~v 190 (904)
|+.+.|.|.+.|.|.|.++|+|+ +..+....++.. .+++|.|.++ +|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~-~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKG-TELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEEC-CEEcccCCCEEECCCCeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 68899999999999999999999 666666666664 5678999999 6999999999999999999888765
No 41
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.27 E-value=3.9e-11 Score=102.06 Aligned_cols=89 Identities=24% Similarity=0.329 Sum_probs=69.8
Q ss_pred CCCCeEEcCCCCceEEe---cCCCeEEEEEEccCCCCeEEEeeCCccccCC-CCceee--------cceEEEEeee---c
Q psy8771 102 RVPPQFSIPPPALLEVM---LDSPLNLSCVAVGSPMPFVKWRKGQNIELTP-DDKLPV--------GRNVLTLDRV---T 166 (904)
Q Consensus 102 ~~~P~~~~~~~~~~~~~---~g~~~~l~C~~~g~p~p~i~W~k~~~~~~~~-~~~~~~--------~~~~l~i~~l---~ 166 (904)
..+|.|..+|.-...+. .|..++|.|.+.|.|.|.++|+|+ +..+.. +.++.. ..+.|.|.++ +
T Consensus 2 ~~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~-g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~ 80 (109)
T cd05773 2 RFAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKN-GVPLDLGNPRYEETTEHTGTVHTSILTIINVSAAL 80 (109)
T ss_pred ccccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEEC-CEECCCCCCeEEEEeeccCccceeEEEECcCCccC
Confidence 45788877777323333 558999999999999999999999 666643 334431 1357999887 5
Q ss_pred CCeEEEEEEEecCcceEEEEEEEEE
Q psy8771 167 ESENYTCIAASVLGVIETSTIVKVQ 191 (904)
Q Consensus 167 d~g~Y~c~a~n~~g~~~~~~~l~v~ 191 (904)
|.|.|+|.|.|..|.....+.|.+.
T Consensus 81 D~G~Y~C~A~N~~G~~~~~i~L~~~ 105 (109)
T cd05773 81 DYALFTCTAHNSLGEDSLDIQLVST 105 (109)
T ss_pred CCEEEEEEEEeCCccCcEEEEEEec
Confidence 9999999999999999999999988
No 42
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.26 E-value=4e-11 Score=97.59 Aligned_cols=80 Identities=20% Similarity=0.441 Sum_probs=63.8
Q ss_pred cCCCCceEEecCCCeEEEEEEccCCCCeEEEeeCCccccCCCCceee-cce---EEEEeee--cCCeEEEEEEEecCcce
Q psy8771 109 IPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPV-GRN---VLTLDRV--TESENYTCIAASVLGVI 182 (904)
Q Consensus 109 ~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~-~~~---~l~i~~l--~d~g~Y~c~a~n~~g~~ 182 (904)
..|.+ +.+.+|+.+.|.|.+.|.|. .++|+++++..+..+.|+.+ .++ .|.|.++ +|+|.|+|.|.|..|..
T Consensus 5 ~~~~~-~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~ 82 (92)
T cd05866 5 ISLSK-VELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQT 82 (92)
T ss_pred EEecc-eEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcE
Confidence 34556 88999999999999999998 89999864666666666664 233 8999999 69999999999999985
Q ss_pred -EEEEEEEE
Q psy8771 183 -ETSTIVKV 190 (904)
Q Consensus 183 -~~~~~l~v 190 (904)
+++..|.+
T Consensus 83 ~~~~i~l~~ 91 (92)
T cd05866 83 QEATVVLEI 91 (92)
T ss_pred EEEEEEEEE
Confidence 45555543
No 43
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.25 E-value=3.1e-11 Score=91.08 Aligned_cols=64 Identities=16% Similarity=0.267 Sum_probs=54.2
Q ss_pred eEEEEEEccCCCCeEEEeeCCccccCCCCceeecceEEEEeee--cCCeEEEEEEEecCcceEEEEEEEEE
Q psy8771 123 LNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRNVLTLDRV--TESENYTCIAASVLGVIETSTIVKVQ 191 (904)
Q Consensus 123 ~~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~l~i~~l--~d~g~Y~c~a~n~~g~~~~~~~l~v~ 191 (904)
++|.|.+.|.|.|.++|+|+ |..+... ...+.|.|.++ +|+|.|+|.|.|..|..+.+..+.+.
T Consensus 1 ~~l~c~v~g~P~P~v~W~kd-g~~l~~~----~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKD-GKLISGK----HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred CEEEEEEEEeCCCEEEEEEC-CEECccc----CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence 47999999999999999999 7766432 24569999999 69999999999999988887777654
No 44
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.25 E-value=4.9e-11 Score=101.29 Aligned_cols=85 Identities=27% Similarity=0.528 Sum_probs=65.5
Q ss_pred CCeEEcCCCCceEEecCCCeEEEEEEccCCCCeEEEeeCCccccCC-----C-CceeecceEEEEee-------ecCCeE
Q psy8771 104 PPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTP-----D-DKLPVGRNVLTLDR-------VTESEN 170 (904)
Q Consensus 104 ~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~k~~~~~~~~-----~-~~~~~~~~~l~i~~-------l~d~g~ 170 (904)
||.|...|.+ +.+.+|+++.|.|.+.|.|.|.|.|+|+ +..+.. . .+....++.+.+.. .+|+|.
T Consensus 1 ~P~i~~~p~~-~~v~~G~~~~l~C~~~g~P~p~i~W~k~-g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~ 78 (100)
T cd07693 1 PPRIVEHPSD-LIVSKGDPATLNCKAEGRPTPTIQWLKN-GQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGV 78 (100)
T ss_pred CCeEEecCce-eEEcCCCeEEEEeeCCcCCCCEEEEEEC-CEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEE
Confidence 6889999988 9999999999999999999999999999 665543 1 12223344332222 269999
Q ss_pred EEEEEEecCcc-eEEEEEEEE
Q psy8771 171 YTCIAASVLGV-IETSTIVKV 190 (904)
Q Consensus 171 Y~c~a~n~~g~-~~~~~~l~v 190 (904)
|+|.|.|..|. .+..+.|.|
T Consensus 79 Y~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 79 YVCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEEEccccceecceEEEEe
Confidence 99999999999 666776665
No 45
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.25 E-value=3.5e-11 Score=93.35 Aligned_cols=68 Identities=18% Similarity=0.323 Sum_probs=59.4
Q ss_pred eEEEEEEccCCCCeEEEeeCCccccCCCCceeecceEEEEeee--cCCeEEEEEEEecCcceEEEEEEEEE
Q psy8771 123 LNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRNVLTLDRV--TESENYTCIAASVLGVIETSTIVKVQ 191 (904)
Q Consensus 123 ~~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~l~i~~l--~d~g~Y~c~a~n~~g~~~~~~~l~v~ 191 (904)
+.|.|.+.|.|.|.+.|+|+ +..+....++....+.|.|.++ +|+|.|+|.|.|..|..+.+..+.+.
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~-g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKN-GKLISEKNRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred CEEEeEEEEeCCCEEEEEEC-CEECCCCCEEEcCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence 47999999999999999999 7777777777778889999999 69999999999999988777776653
No 46
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.25 E-value=7.5e-11 Score=98.21 Aligned_cols=76 Identities=21% Similarity=0.173 Sum_probs=65.1
Q ss_pred eEEecCCCeEEEEEEccCCCCeEEEeeCCccccCCCCceee----------cceEEEEeee--cCCeEEEEEEEecCcce
Q psy8771 115 LEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPV----------GRNVLTLDRV--TESENYTCIAASVLGVI 182 (904)
Q Consensus 115 ~~~~~g~~~~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~----------~~~~l~i~~l--~d~g~Y~c~a~n~~g~~ 182 (904)
..+..|+.+.|.|.+.|.|.|.|.|+|+ +.++..+.+... ....|.|.++ +|+|.|+|.|.|..|..
T Consensus 13 ~~~~~~~~~~l~~~v~g~P~P~v~W~kd-g~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~ 91 (101)
T cd05859 13 EFANLHEVKEFVVEVEAYPPPQIRWLKD-NRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK 91 (101)
T ss_pred EEEecCCcEEEEEEEEEeCCCceEEEEC-CEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence 8888999999999999999999999999 777765543321 1357999999 69999999999999999
Q ss_pred EEEEEEEEE
Q psy8771 183 ETSTIVKVQ 191 (904)
Q Consensus 183 ~~~~~l~v~ 191 (904)
+.++.|.|.
T Consensus 92 ~~t~~l~V~ 100 (101)
T cd05859 92 SYTFALQIQ 100 (101)
T ss_pred EEEEEEEEE
Confidence 999888875
No 47
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.25 E-value=3.2e-11 Score=94.71 Aligned_cols=67 Identities=27% Similarity=0.466 Sum_probs=55.5
Q ss_pred eEEEEEEccCCCCeEEEeeCCccccCC-CCceee--c---ceEEEEeee--cCCeEEEEEEEecCcceEEEEEEEE
Q psy8771 123 LNLSCVAVGSPMPFVKWRKGQNIELTP-DDKLPV--G---RNVLTLDRV--TESENYTCIAASVLGVIETSTIVKV 190 (904)
Q Consensus 123 ~~l~C~~~g~p~p~i~W~k~~~~~~~~-~~~~~~--~---~~~l~i~~l--~d~g~Y~c~a~n~~g~~~~~~~l~v 190 (904)
++|+|.+.|.|.|.|.|+|+ +..+.. ..|+.+ . ..+|.|.++ +|+|.|+|.|.|..|+..+.+.|.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~-~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKN-NEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEeecCCCeEEEEEC-CEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 57999999999999999999 666653 355543 1 126999999 6999999999999999999988865
No 48
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.25 E-value=4.8e-11 Score=95.05 Aligned_cols=74 Identities=19% Similarity=0.350 Sum_probs=63.9
Q ss_pred eEEecCCCeEEEEEEccCCCCeEEEeeCCccccCCCCceeecceEEEEeee--cCCeEEEEEEEecCcceEEEEEEEE
Q psy8771 115 LEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRNVLTLDRV--TESENYTCIAASVLGVIETSTIVKV 190 (904)
Q Consensus 115 ~~~~~g~~~~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~l~i~~l--~d~g~Y~c~a~n~~g~~~~~~~l~v 190 (904)
+.+.+|+.+.|.|.+.|. .+.|.|+|+ |..+....++.+..+.|.|.++ +|+|.|+|.|.|..|.....+.|.|
T Consensus 4 ~~~~~G~~v~l~C~~~~~-~~~v~W~k~-g~~l~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v~V 79 (79)
T cd04973 4 YSAHPGDLLQLRCRLRDD-VQSINWTKD-GVQLGENNRTRITGEEVQIKDAVPRDSGLYACVTSSPSGSDTTYFSVNV 79 (79)
T ss_pred EEecCCCCEEEEEEecCC-CceEEEeeC-CcCCCCCceEEEeCCEEEECCCChhhCEEEEEEEeCCCCcccEEEEEeC
Confidence 788999999999999997 568999999 8888777778777789999998 7999999999999998776665543
No 49
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.25 E-value=3.4e-11 Score=95.78 Aligned_cols=70 Identities=27% Similarity=0.494 Sum_probs=60.0
Q ss_pred CCCeEEEEEEccCCCCeEEEeeCCccccCCCC---ceeecceEEEEeee--cCCeEEEEEEEecCcceEEEEEEEE
Q psy8771 120 DSPLNLSCVAVGSPMPFVKWRKGQNIELTPDD---KLPVGRNVLTLDRV--TESENYTCIAASVLGVIETSTIVKV 190 (904)
Q Consensus 120 g~~~~l~C~~~g~p~p~i~W~k~~~~~~~~~~---~~~~~~~~l~i~~l--~d~g~Y~c~a~n~~g~~~~~~~l~v 190 (904)
|+.+.|.|.+.|.|.|.|.|+++ +..+.... +....++.|.|.++ +|+|.|+|.|.|..|...+.+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~-g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLN-GVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEEC-CEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 68899999999999999999999 66554432 34456789999999 6999999999999999999988876
No 50
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.23 E-value=2.7e-11 Score=93.65 Aligned_cols=65 Identities=25% Similarity=0.634 Sum_probs=56.6
Q ss_pred eEEEEEEccCCCCeEEEeeCCccccCCCCceee-cceEEEEeee--cCCeEEEEEEEecCcceEEEEEE
Q psy8771 123 LNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPV-GRNVLTLDRV--TESENYTCIAASVLGVIETSTIV 188 (904)
Q Consensus 123 ~~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~-~~~~l~i~~l--~d~g~Y~c~a~n~~g~~~~~~~l 188 (904)
+.|.|.+.|.|.|.|+|+|+ +..+....++.+ .++.|.|.++ +|+|.|+|.|.|..|..+.++.|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~-g~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKD-GVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEEC-CEECCCCCCEEECCCCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 57999999999999999999 777766666665 5779999999 69999999999999998887766
No 51
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.23 E-value=6.5e-11 Score=99.18 Aligned_cols=84 Identities=25% Similarity=0.486 Sum_probs=67.3
Q ss_pred CCeEEcCCCCceEEecCCCeEEEEEEccCCCCeEEEeeCCccccCCC-----Cceee----cceEEEEeee--cCCeEEE
Q psy8771 104 PPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPD-----DKLPV----GRNVLTLDRV--TESENYT 172 (904)
Q Consensus 104 ~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~k~~~~~~~~~-----~~~~~----~~~~l~i~~l--~d~g~Y~ 172 (904)
+|+|.. +.+ ..+.+|+++.|.|.+.|.|.|.|.|+++ +..+... .++.+ ....|.|.++ +|+|.|+
T Consensus 2 ~P~i~~-~~~-~~~~~g~~v~l~C~~~g~p~p~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 78 (96)
T cd05732 2 QPKITY-LEN-QTAVELEQITLTCEAEGDPIPEITWRRA-TRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYD 78 (96)
T ss_pred Ccccee-cCc-eeEecCCcEEEEEEEeEcCCCcEEEEEC-CcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeE
Confidence 577753 445 8899999999999999999999999998 5444332 23333 2358999999 6999999
Q ss_pred EEEEecCcceEEEEEEEE
Q psy8771 173 CIAASVLGVIETSTIVKV 190 (904)
Q Consensus 173 c~a~n~~g~~~~~~~l~v 190 (904)
|.|.|..|..+.++.|.|
T Consensus 79 C~a~N~~G~~~~s~~l~v 96 (96)
T cd05732 79 CEASNRIGGDQQSMYLEV 96 (96)
T ss_pred EEEEeCCCCcEEEEEEeC
Confidence 999999999988888764
No 52
>KOG4258|consensus
Probab=99.23 E-value=3.9e-10 Score=120.91 Aligned_cols=360 Identities=19% Similarity=0.271 Sum_probs=192.9
Q ss_pred ceEEEeecCCeEEEEEeCCC----ccceEEEEEEEeCCC-------------CCCeEEee--c-------ceeceEEEcC
Q psy8771 206 DVKISEVTATSVRLDWTYPS----ETLLYYVIQYKPKAA-------------NTPYSEIS--G-------IITTYYTVRN 259 (904)
Q Consensus 206 ~l~~~~~~~~sv~l~W~~~~----~~~~~y~v~~~~~~~-------------~~~~~~~~--~-------~~~~~~~i~~ 259 (904)
++.....+.+++.++|..-. ....+|.+.|...-. ...|..+. . ....-+.+.+
T Consensus 493 ~~~~~~~~~dsi~lrW~~~~~~d~r~llg~~~~yKEaP~qNvT~~dg~~aCg~~~W~~~~v~~~~~~p~~~~~~~~~l~~ 572 (1025)
T KOG4258|consen 493 QFSSTVTSADSILLRWERYQPPDMRDLLGFLLHYKEAPFQNVTEEDGRDACGSNSWNVVDVDPPDLIPNDGTHPGFLLDG 572 (1025)
T ss_pred eeeeEEeecceeEEEecccCCcchhhhheeeEeeccCCccccceecCccccccCcceEEeccCCcCCCccccccceehhc
Confidence 34455567789999998763 337889998875421 12233221 1 1223578899
Q ss_pred CCCCCeEEEEEEEEcCC--CCC--CCCCCeEEecCCCCCCCCCCceEecccCCCeeEEEecCCCCCCceeeEEEEEeece
Q psy8771 260 LSPYTEYEFYIIAVNNL--GRG--PPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITAKHHRRIGL 335 (904)
Q Consensus 260 L~p~~~Y~~~v~a~n~~--g~s--~~s~~~~~~t~~~~p~~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~~~~~~~~~~~ 335 (904)
|+|.|.|-|-|++.... +.. ..|....++|.+..| .+|........+++.+.|+|.+|..+||.+.+|.+.....
T Consensus 573 LkP~TqYAvfVkT~t~t~~~~~~~A~S~I~YvqT~~~~P-spPl~~ls~snsSsqi~l~W~pP~~pNG~lt~Ylv~wer~ 651 (1025)
T KOG4258|consen 573 LKPWTQYAVFVKTLTVTEAHEAYEAKSKIGYVQTLPDIP-SPPLDVLSKSNSSSQILLKWKPPSQPNGNLTHYLVVWERQ 651 (1025)
T ss_pred CCccceeEEEEeeeehhhhccccccccceEEEEecCCCC-CCcchhhhccCcchheeEEecCCCCCCCceeEEEEEEEec
Confidence 99999999999997321 211 346667788887766 7787777777778899999999999999999987655332
Q ss_pred e-------EEEEEcCCCCCcE-EEEEEEEEc---------CCCCCCCCCCcceeeccCCCCCCCCcccccccccceee--
Q psy8771 336 V-------ETYSLTGLYPNTL-YYIWLAAQS---------PRGEGATTPPIPVRTKQYGKTPGFGEQAAKHHRRIGLV-- 396 (904)
Q Consensus 336 ~-------~~~~~~~L~~~~~-Y~v~v~a~~---------~~g~~~~s~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~-- 396 (904)
. ..|-..+++--.. +.=.+.+.+ ..|....-++....... ........+...+.
T Consensus 652 ~~~~yl~~~nYC~~~~k~p~~~~~p~~~~ed~d~~~e~e~~~~~Cc~c~~~~~~~~~-------e~eea~~~~~FEd~L~ 724 (1025)
T KOG4258|consen 652 AEDGYLEQRNYCHKGLKLPIRADLPSFDSEDMDPLLEMEGHTGPCCSCPPTESYPQY-------EDEEASEQKTFEDFLH 724 (1025)
T ss_pred cCCchHHHhccccccccccccccCCCCchhhcchhhhhccCCCCCCCCCcccccCch-------hhHHHHHHHHHhhhcc
Confidence 1 1233332211000 000000000 00000000000000000 00000000000000
Q ss_pred --------eEEEEeccccCcEEEEEEeeecCC--CCCCCCCCcceE----eeccCCCCceeeeeccCCeEEEEEEEEeeC
Q psy8771 397 --------ETYSLTGLYPNTLYYIWLAAQSPR--GEGATTPPIPVR----TKQYGKTPGFGEQALYPNTLYYIWLAAQSP 462 (904)
Q Consensus 397 --------~~~~~~~~~~~~~y~~~~~~~~~~--g~~~~~~~~~~~----~~~~~~~~~~~~~~L~p~~~Y~~~v~a~~~ 462 (904)
....-..+.+...+..-....... .....+.+.++. ....+...++.+.+|+..+.|.+.+.|.|.
T Consensus 725 n~i~vpr~~~~krk~l~~~~n~t~~~~~~~~~~p~t~~~t~p~ei~e~~p~~~n~n~~~~vi~~Lrh~tlY~i~l~aCnh 804 (1025)
T KOG4258|consen 725 NAIFVPRRPDRKRKSLDDVENCTRLAPTRKAEEPTTPPTTAPTEIEEPKPRLENGNKESYVISGLRHFTLYRIDLQACNH 804 (1025)
T ss_pred ceeeecccCcccccccccccceeeccccccccCCCCCCCCCCccccccCcccccccchhhhhhccccchhhhhhHhhhcc
Confidence 000000011111111111100000 000000111110 111256677899999999999999999998
Q ss_pred CCC----CCCCCCceeeecCCCC-CCCCCCeEEEec-CCceEEEEecCCCCCCCceeeEEEEEEeCCCCCCcceEEE-ee
Q psy8771 463 RGE----GATTPPIPVRTKQYEP-GTAPRDVQVRPL-SSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQ-VV 535 (904)
Q Consensus 463 ~g~----~~~s~~~~~~t~~~~p-~~~p~~l~v~~~-~~~~~~l~W~~p~~~~~~i~~Y~v~~~~~~~~~~~~~~~~-~~ 535 (904)
.+. |..+ .+..+|...+- ...|..+.-... ..+++.|+|.+|.+++|-+..|.|.|+............. ..
T Consensus 805 ~~~~~~cS~a~-~v~~RT~~~~~aD~i~g~v~we~~~~~~~v~l~w~EP~~pNGli~~Y~Vk~r~~~~et~v~cvsR~~~ 883 (1025)
T KOG4258|consen 805 ATPKCGCSHAA-FVFARTMPTMGADDIPGPVTWECHIEMNSVILRWLEPKEPNGLILNYEVKYRRNGDETHVECVSRMDY 883 (1025)
T ss_pred cccccccchhh-hhhhccccccccccCCCceeEecccCcceEEEecCCCCCCCccEEEEEEEEeeccCcchhhhhhhhhh
Confidence 765 2211 12223322211 122322322223 7789999999999999999999999997664322211111 11
Q ss_pred cCceEEEEcCCCCCCeEEEEEEEEeCCCCCCCCCcEEEec
Q psy8771 536 DNNQLTTISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKT 575 (904)
Q Consensus 536 ~~~~~~~~~~L~p~t~Y~~~V~a~~~~g~~~~S~~~~~~t 575 (904)
.......+..|.+| .|.++|+|..-.|.|.|.+...+..
T Consensus 884 ~k~~gv~l~~l~~G-~y~~~vratSlaGng~~t~~~~~~v 922 (1025)
T KOG4258|consen 884 AKAGGVYLKRLNPG-NYSVRVRATSLAGNGSWTESVIFYV 922 (1025)
T ss_pred hhcCceEEEecCCC-cEEEEEEEEeeccCCCCcCCcceEE
Confidence 33345678889888 8999999999999998877665443
No 53
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.23 E-value=8.4e-11 Score=96.06 Aligned_cols=73 Identities=23% Similarity=0.503 Sum_probs=59.6
Q ss_pred eEEecCCCeEEEEEEccCCCCeEEEeeCCccccCCCCceee--cceEEEEeee--cCCeEEEEEEEecCcceEE-EEEEE
Q psy8771 115 LEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPV--GRNVLTLDRV--TESENYTCIAASVLGVIET-STIVK 189 (904)
Q Consensus 115 ~~~~~g~~~~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~--~~~~l~i~~l--~d~g~Y~c~a~n~~g~~~~-~~~l~ 189 (904)
+.+.+|++++|.|.+.|. .|.|.|+|+ +..+... ++.+ +.+.|.|.++ +|+|.|+|.|.|..|...+ .+.|.
T Consensus 13 ~~v~~g~~v~l~C~a~g~-~p~i~W~kn-g~~l~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L~ 89 (91)
T cd05740 13 QPPEDNQPVTLTCEAEGQ-ATYIWWVNN-GSLLVPP-RLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYILN 89 (91)
T ss_pred cccccCCcEEEEEEeCCC-CCEEEEEEC-CEECCCC-CEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEEE
Confidence 899999999999999999 999999999 5555433 3433 5568999999 6999999999999998544 55555
Q ss_pred E
Q psy8771 190 V 190 (904)
Q Consensus 190 v 190 (904)
|
T Consensus 90 V 90 (91)
T cd05740 90 V 90 (91)
T ss_pred e
Confidence 4
No 54
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.23 E-value=4.8e-11 Score=92.48 Aligned_cols=67 Identities=31% Similarity=0.564 Sum_probs=55.4
Q ss_pred eEEEEEEccCCCCeEEEeeCCccccCCCCceeecceEEEEeee--cCCeEEEEEEEecCcceEEEEEEEE
Q psy8771 123 LNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRNVLTLDRV--TESENYTCIAASVLGVIETSTIVKV 190 (904)
Q Consensus 123 ~~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~l~i~~l--~d~g~Y~c~a~n~~g~~~~~~~l~v 190 (904)
++|+|.+.|.|.|.+.|+|+ +..+.........++.|.|.++ +|+|.|+|.|.|..|..+..+.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~-~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKE-DGELPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECccCCCCEEEEEEC-CccCCCCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 57999999999999999999 5555443322336778999999 6999999999999999988888764
No 55
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.22 E-value=8.7e-11 Score=94.72 Aligned_cols=70 Identities=21% Similarity=0.376 Sum_probs=57.9
Q ss_pred CCeEEEEEEccCCCC--eEEEeeCCccccCC---CCcee---e--cceEEEEeee--cCCeEEEEEEEecCcceEEEEEE
Q psy8771 121 SPLNLSCVAVGSPMP--FVKWRKGQNIELTP---DDKLP---V--GRNVLTLDRV--TESENYTCIAASVLGVIETSTIV 188 (904)
Q Consensus 121 ~~~~l~C~~~g~p~p--~i~W~k~~~~~~~~---~~~~~---~--~~~~l~i~~l--~d~g~Y~c~a~n~~g~~~~~~~l 188 (904)
+.++|.|.+.|+|.| .|+|+|+ +..+.. ..++. . ..++|.|.++ +|+|.|+|.|.|..|+.++++.|
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~-g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L 79 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLD-DFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATL 79 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEEC-CeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEE
Confidence 468999999999998 5799999 665543 22332 1 4578999999 69999999999999999999999
Q ss_pred EEE
Q psy8771 189 KVQ 191 (904)
Q Consensus 189 ~v~ 191 (904)
.|.
T Consensus 80 ~V~ 82 (85)
T cd05854 80 VVR 82 (85)
T ss_pred EEE
Confidence 998
No 56
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.21 E-value=6.1e-11 Score=90.87 Aligned_cols=67 Identities=21% Similarity=0.309 Sum_probs=55.4
Q ss_pred eEEEEEEccCCCCeEEEeeCCccccCCCCceeecceEEEEeee--cCCeEEEEEEEecCcceEEEEEEEEE
Q psy8771 123 LNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRNVLTLDRV--TESENYTCIAASVLGVIETSTIVKVQ 191 (904)
Q Consensus 123 ~~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~l~i~~l--~d~g~Y~c~a~n~~g~~~~~~~l~v~ 191 (904)
+.|.|.+.|.|.|.++|+|+ +..+....++. .+..|.|.++ +|+|.|+|.|.|..|..+....+.+.
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~-g~~l~~~~~~~-~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~ 69 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKN-GQLIVLNHTFK-RGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLV 69 (70)
T ss_pred CEEEeEEEEeCCCEEEEEEC-CEECCCCCEEc-cCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEE
Confidence 47999999999999999999 77776554443 4558999999 69999999999999987777666653
No 57
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.21 E-value=7.9e-11 Score=92.86 Aligned_cols=68 Identities=24% Similarity=0.394 Sum_probs=57.5
Q ss_pred CeEEEEEEccCCCCeEEEeeCCccccCCCCceee----cceEEEEeee--cCCeEEEEEEEecCcceEEEEEEEE
Q psy8771 122 PLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPV----GRNVLTLDRV--TESENYTCIAASVLGVIETSTIVKV 190 (904)
Q Consensus 122 ~~~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~----~~~~l~i~~l--~d~g~Y~c~a~n~~g~~~~~~~l~v 190 (904)
.+.|.|.+.|.|.|.+.|+|+ +..+....++.+ ....|.|.++ +|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~-g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKD-GKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEEC-CEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 478999999999999999999 667765566554 3568999999 6999999999999999888887764
No 58
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.20 E-value=8.8e-11 Score=95.76 Aligned_cols=75 Identities=24% Similarity=0.516 Sum_probs=62.6
Q ss_pred eEEecCCCeEEEEEEccCCCCeEEEeeCCccccCCCCce-----eecceEEEEeee--cCCeEEEEEEEecCcceEEEEE
Q psy8771 115 LEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKL-----PVGRNVLTLDRV--TESENYTCIAASVLGVIETSTI 187 (904)
Q Consensus 115 ~~~~~g~~~~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~-----~~~~~~l~i~~l--~d~g~Y~c~a~n~~g~~~~~~~ 187 (904)
..+.+|+.+.|.|.+.|.|.|.|+|+|+ +..+....+. ......|.|.++ +|+|.|+|.|.|..|..+..+.
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~-g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 82 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKN-GKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH 82 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEEC-CEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEE
Confidence 5678999999999999999999999999 6666544332 224567999888 6999999999999999999888
Q ss_pred EEE
Q psy8771 188 VKV 190 (904)
Q Consensus 188 l~v 190 (904)
|.|
T Consensus 83 l~v 85 (85)
T cd05857 83 LDV 85 (85)
T ss_pred EEC
Confidence 765
No 59
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.20 E-value=1.3e-10 Score=92.28 Aligned_cols=70 Identities=11% Similarity=0.274 Sum_probs=58.7
Q ss_pred CCeEEEEEEccCC--CCeEEEeeCCccccC---CCCceee-----cceEEEEeee--cCCeEEEEEEEecCcceEEEEEE
Q psy8771 121 SPLNLSCVAVGSP--MPFVKWRKGQNIELT---PDDKLPV-----GRNVLTLDRV--TESENYTCIAASVLGVIETSTIV 188 (904)
Q Consensus 121 ~~~~l~C~~~g~p--~p~i~W~k~~~~~~~---~~~~~~~-----~~~~l~i~~l--~d~g~Y~c~a~n~~g~~~~~~~l 188 (904)
+++.|+|.+.++| .+.|.|+|| |..+. ...++.. ..+.|.|.++ +|+|.|+|.|.|..++.++++.|
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~d-g~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L 79 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFN-GHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADL 79 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEEC-CEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEE
Confidence 4689999999855 678999999 77664 2335544 4568999999 69999999999999999999999
Q ss_pred EEE
Q psy8771 189 KVQ 191 (904)
Q Consensus 189 ~v~ 191 (904)
.|+
T Consensus 80 ~V~ 82 (85)
T cd05853 80 IVR 82 (85)
T ss_pred EEe
Confidence 999
No 60
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.19 E-value=8.9e-11 Score=93.39 Aligned_cols=70 Identities=24% Similarity=0.501 Sum_probs=58.1
Q ss_pred CCCeEEEEEEccCCCCeEEEeeCCccccCCCCceee----cceEEEEeee--cCCeEEEEEEEecCcceEEEEEEEE
Q psy8771 120 DSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPV----GRNVLTLDRV--TESENYTCIAASVLGVIETSTIVKV 190 (904)
Q Consensus 120 g~~~~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~----~~~~l~i~~l--~d~g~Y~c~a~n~~g~~~~~~~l~v 190 (904)
|+++.|.|.+.|.|.|.|.|+++ +..+....++.+ +.+.|.|.++ +|+|.|+|.|.|..|...+.+.+.+
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~-~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~~ 76 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLN-WGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGIL 76 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEEC-CeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEEE
Confidence 68899999999999999999999 556655555543 3468999999 6999999999999999877766654
No 61
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.19 E-value=1.2e-10 Score=91.84 Aligned_cols=71 Identities=18% Similarity=0.397 Sum_probs=59.0
Q ss_pred CCCeEEEEEEccCCCCeEEEeeCCccccCCCCcee-ecceEEEEeee--cCCeEEEEEEEecCcceEEEEEEEE
Q psy8771 120 DSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLP-VGRNVLTLDRV--TESENYTCIAASVLGVIETSTIVKV 190 (904)
Q Consensus 120 g~~~~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~-~~~~~l~i~~l--~d~g~Y~c~a~n~~g~~~~~~~l~v 190 (904)
|+.+.|.|.+.|.|.|.|.|+++++..+....+.. ..+++|.|.++ +|.|.|+|.|.|..|..++.+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 68899999999999999999985466665555443 36778999988 6999999999999999888877764
No 62
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.18 E-value=1.6e-10 Score=95.03 Aligned_cols=75 Identities=27% Similarity=0.441 Sum_probs=62.7
Q ss_pred eEEecCCCeEEEEEEccCCCCeEEEeeCCccccCCCCceee--c---ceEEEEeee--cCCeEEEEEEEecCcceEEEEE
Q psy8771 115 LEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPV--G---RNVLTLDRV--TESENYTCIAASVLGVIETSTI 187 (904)
Q Consensus 115 ~~~~~g~~~~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~--~---~~~l~i~~l--~d~g~Y~c~a~n~~g~~~~~~~ 187 (904)
+++.+|+.+.|.|.+.|.|.|.+.|+|+ +..+....++.. . ..+|.|.++ +|+|.|+|.|.|..|...++..
T Consensus 11 v~v~eG~~v~L~C~v~g~P~p~i~W~k~-~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 89 (92)
T cd05891 11 VTIMEGKTLNLTCTVFGNPDPEVIWFKN-DQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVDVT 89 (92)
T ss_pred EEEcCCCEEEEEEEEEEeCCCeEEEEEC-CEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeEEE
Confidence 8999999999999999999999999999 555655554432 2 247999998 7999999999999999888777
Q ss_pred EEE
Q psy8771 188 VKV 190 (904)
Q Consensus 188 l~v 190 (904)
|.|
T Consensus 90 v~~ 92 (92)
T cd05891 90 VSV 92 (92)
T ss_pred EEC
Confidence 654
No 63
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.18 E-value=1.9e-10 Score=95.82 Aligned_cols=81 Identities=25% Similarity=0.491 Sum_probs=63.3
Q ss_pred EEcCCCCceEEecCCCeEEEEEEccCCCCeEEEeeCCccccCCCCc--e-eecceEEEEeee-------cCCeEEEEEEE
Q psy8771 107 FSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDK--L-PVGRNVLTLDRV-------TESENYTCIAA 176 (904)
Q Consensus 107 ~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~k~~~~~~~~~~~--~-~~~~~~l~i~~l-------~d~g~Y~c~a~ 176 (904)
|...|.+ ..+.+|+++.|.|.+.|.|.|.|+|+|+ +..+....+ . ...+++|.|.++ +|.|.|+|.|.
T Consensus 2 f~~~P~~-~~~~~g~~v~l~C~v~g~P~p~i~W~k~-g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~ 79 (95)
T cd05722 2 FLSEPSD-IVAVRGGPVVLNCSAEGEPPPKIEWKKD-GVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQ 79 (95)
T ss_pred cEECCCC-eEEcCCCCEEEeeecccCCCCEEEEEEC-CeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEE
Confidence 4556777 8888999999999999999999999999 666654322 2 235677888776 48999999999
Q ss_pred ec-Ccce-EEEEEEE
Q psy8771 177 SV-LGVI-ETSTIVK 189 (904)
Q Consensus 177 n~-~g~~-~~~~~l~ 189 (904)
|. .|.. +..+.|.
T Consensus 80 N~~~G~~~s~~~~l~ 94 (95)
T cd05722 80 NDSLGSIVSRTARLT 94 (95)
T ss_pred CCccCcEEEeeeEEe
Confidence 99 9986 4455554
No 64
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.17 E-value=1.7e-10 Score=91.23 Aligned_cols=68 Identities=25% Similarity=0.576 Sum_probs=55.1
Q ss_pred eEEEEEEccCCCCeEEEeeCCccccC--CCCceee--cceEEEEeee--cCCeEEEEEEEecCcceEEEEEEEE
Q psy8771 123 LNLSCVAVGSPMPFVKWRKGQNIELT--PDDKLPV--GRNVLTLDRV--TESENYTCIAASVLGVIETSTIVKV 190 (904)
Q Consensus 123 ~~l~C~~~g~p~p~i~W~k~~~~~~~--~~~~~~~--~~~~l~i~~l--~d~g~Y~c~a~n~~g~~~~~~~l~v 190 (904)
++|.|.+.|.|.|.|+|+|+++..+. ...++.. .++.|.|.++ +|+|.|+|.|.|..|.....+.|.|
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 47999999999999999998443232 2234433 4568999999 6999999999999999999988877
No 65
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.16 E-value=2.3e-10 Score=95.81 Aligned_cols=82 Identities=20% Similarity=0.381 Sum_probs=64.8
Q ss_pred CCeEEcCCCCceEEecCCCeEEEEEEccCCCC-eEEEeeCCccccCC--CCceeecc--------eEEEEeeec--C-Ce
Q psy8771 104 PPQFSIPPPALLEVMLDSPLNLSCVAVGSPMP-FVKWRKGQNIELTP--DDKLPVGR--------NVLTLDRVT--E-SE 169 (904)
Q Consensus 104 ~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p-~i~W~k~~~~~~~~--~~~~~~~~--------~~l~i~~l~--d-~g 169 (904)
||.|.. +.. ..+.+|+.+.|.|.+.|.|.| .|.|+++ +..+.. ..|+.+.. ..|.|.+++ | .|
T Consensus 2 pp~i~~-~~~-~~~~~G~~v~L~C~~~g~P~P~~v~W~~~-~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G 78 (98)
T cd05758 2 PPIITS-EAT-QYAILGDKGRVECFIFSTPPPDRIVWTWK-ENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQT 78 (98)
T ss_pred CCeEcC-CCc-EEEeCCCcEEEEEEEcccCCCCEeEEEEC-CEEccCCCCCCEEEEEecCCCceEEEEEECCccccccce
Confidence 677754 445 788999999999999999999 6999999 655543 24555421 379999993 5 79
Q ss_pred EEEEEEEecCcceEEEEEE
Q psy8771 170 NYTCIAASVLGVIETSTIV 188 (904)
Q Consensus 170 ~Y~c~a~n~~g~~~~~~~l 188 (904)
.|+|.|.|..|...+.+.|
T Consensus 79 ~Y~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 79 SYNCTAWNSFGSGTAIISL 97 (98)
T ss_pred eEEEEEEcCCCcccEEEEe
Confidence 9999999999998887765
No 66
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.16 E-value=2e-10 Score=94.42 Aligned_cols=72 Identities=26% Similarity=0.519 Sum_probs=60.7
Q ss_pred CCCeEEEEEEccCCCCeEEEeeCCcccc-------CCCCceee-cceEEEEeee--cCCeEEEEEEEecCcceEEEEEEE
Q psy8771 120 DSPLNLSCVAVGSPMPFVKWRKGQNIEL-------TPDDKLPV-GRNVLTLDRV--TESENYTCIAASVLGVIETSTIVK 189 (904)
Q Consensus 120 g~~~~l~C~~~g~p~p~i~W~k~~~~~~-------~~~~~~~~-~~~~l~i~~l--~d~g~Y~c~a~n~~g~~~~~~~l~ 189 (904)
|+.+.|.|.+.|.|.|.|.|+|+++..+ ....|+.+ .++.|.|.++ +|+|.|+|.|.|..|...+.+.|.
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 80 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSILTKAYLE 80 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCceEEEEEEE
Confidence 6889999999999999999999844321 23445654 4678999999 699999999999999999999999
Q ss_pred EE
Q psy8771 190 VQ 191 (904)
Q Consensus 190 v~ 191 (904)
|.
T Consensus 81 V~ 82 (90)
T cd05726 81 VT 82 (90)
T ss_pred Ee
Confidence 98
No 67
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.15 E-value=1.8e-10 Score=91.24 Aligned_cols=68 Identities=25% Similarity=0.462 Sum_probs=53.7
Q ss_pred eEEEEEEccCCCCeEEEeeCCccccCCCC-ceee--cceEEEEeee--cCCeEEEEEEEecCcceEEEEEEEEE
Q psy8771 123 LNLSCVAVGSPMPFVKWRKGQNIELTPDD-KLPV--GRNVLTLDRV--TESENYTCIAASVLGVIETSTIVKVQ 191 (904)
Q Consensus 123 ~~l~C~~~g~p~p~i~W~k~~~~~~~~~~-~~~~--~~~~l~i~~l--~d~g~Y~c~a~n~~g~~~~~~~l~v~ 191 (904)
++|.|.+.|.|.|.|+|+|+ |..+.... ++.. .++.|.|.++ +|+|.|+|.|.|..|...+++.+.+.
T Consensus 1 v~L~C~~~g~P~p~v~W~k~-g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~ 73 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRD-GTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLS 73 (77)
T ss_pred CEEEEEeeecCCCcEEEEEC-CEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEE
Confidence 57999999999999999999 66665432 3333 4568999999 69999999999999987655555443
No 68
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.14 E-value=1.6e-10 Score=90.70 Aligned_cols=67 Identities=19% Similarity=0.488 Sum_probs=55.0
Q ss_pred eEEEEEEccCCCCeEEEeeCCccccC--CCCceee-cceEEEEeee--cCCeEEEEEEEecCcc-eEEEEEEEE
Q psy8771 123 LNLSCVAVGSPMPFVKWRKGQNIELT--PDDKLPV-GRNVLTLDRV--TESENYTCIAASVLGV-IETSTIVKV 190 (904)
Q Consensus 123 ~~l~C~~~g~p~p~i~W~k~~~~~~~--~~~~~~~-~~~~l~i~~l--~d~g~Y~c~a~n~~g~-~~~~~~l~v 190 (904)
++|.|.+.|.|.|.|+|+|+ +..+. ...++.. .++.|.|.++ +|+|.|+|.|.|..|. .+..+.|.|
T Consensus 1 a~l~C~~~G~P~p~v~W~k~-~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKD-FLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEEeEecCCEEEEEEC-CEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 57999999999999999999 66665 3455554 5678999998 6999999999999998 466777766
No 69
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.14 E-value=1.7e-10 Score=89.98 Aligned_cols=65 Identities=20% Similarity=0.290 Sum_probs=52.7
Q ss_pred EEEEEEccCCCCeEEEeeCCccccCCCCceee---------cceEEEEeee--cCCeEEEEEEEecCcceEEEEEEE
Q psy8771 124 NLSCVAVGSPMPFVKWRKGQNIELTPDDKLPV---------GRNVLTLDRV--TESENYTCIAASVLGVIETSTIVK 189 (904)
Q Consensus 124 ~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~---------~~~~l~i~~l--~d~g~Y~c~a~n~~g~~~~~~~l~ 189 (904)
-|.|.+.|.|.|+|+|+|+ |..+..+.+... ..+.|.|.++ +|+|.|+|.|.|..|+.+++..+.
T Consensus 2 ~i~~~v~G~P~Pti~W~kn-g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 2 CIPFTVKGNPKPTLQWFHE-GAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred eEEEEEeEeCCCceEEEEC-CEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 3789999999999999999 878876654321 2357999998 699999999999999887766543
No 70
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.14 E-value=1.8e-10 Score=90.27 Aligned_cols=67 Identities=34% Similarity=0.555 Sum_probs=54.2
Q ss_pred eEEEEEEccCCCCeEEEeeCCccccCCC-CceeecceEEEEeee--cCCeEEEEEEEecCcceEEEEEEEE
Q psy8771 123 LNLSCVAVGSPMPFVKWRKGQNIELTPD-DKLPVGRNVLTLDRV--TESENYTCIAASVLGVIETSTIVKV 190 (904)
Q Consensus 123 ~~l~C~~~g~p~p~i~W~k~~~~~~~~~-~~~~~~~~~l~i~~l--~d~g~Y~c~a~n~~g~~~~~~~l~v 190 (904)
+.|.|.+.|.|.|.+.|+|+ +..+... .+.....+.|.|.++ +|+|.|+|.|.|..|..+..+.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~-~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKI-GGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEEC-CeECCCCceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 47999999999999999999 4444332 222334568999999 6999999999999999888888776
No 71
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.14 E-value=4.5e-10 Score=91.92 Aligned_cols=77 Identities=23% Similarity=0.522 Sum_probs=61.6
Q ss_pred CCCceEEecCCCeEEEEEE-ccCCCCeEEEeeCCccccCC-CCceee-cceEEEEeee--cCCeEEEEEEEecCcceE-E
Q psy8771 111 PPALLEVMLDSPLNLSCVA-VGSPMPFVKWRKGQNIELTP-DDKLPV-GRNVLTLDRV--TESENYTCIAASVLGVIE-T 184 (904)
Q Consensus 111 ~~~~~~~~~g~~~~l~C~~-~g~p~p~i~W~k~~~~~~~~-~~~~~~-~~~~l~i~~l--~d~g~Y~c~a~n~~g~~~-~ 184 (904)
|.+ +.+.+|+++.|.|.+ .|.|.|.|.|+|+ +..+.. ..++.. .++.|.|.++ +|+|.|+|.|.|..|... .
T Consensus 3 p~~-~~~~~G~~v~l~C~~~~g~p~p~i~W~k~-g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~ 80 (86)
T cd05724 3 PSD-TQVAVGEMAVLECSPPRGHPEPTVSWRKD-GQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESA 80 (86)
T ss_pred Ccc-EEEeCCCCEEEEEECCCCCCCCEEEEEEC-CEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceeee
Confidence 445 889999999999998 7999999999999 555544 444443 5679999999 699999999999999854 4
Q ss_pred EEEEE
Q psy8771 185 STIVK 189 (904)
Q Consensus 185 ~~~l~ 189 (904)
.+.|.
T Consensus 81 ~~~l~ 85 (86)
T cd05724 81 AARLS 85 (86)
T ss_pred eEEEE
Confidence 44443
No 72
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.13 E-value=1.7e-10 Score=94.58 Aligned_cols=72 Identities=24% Similarity=0.444 Sum_probs=55.3
Q ss_pred CCCeEEEEEEccCCCCeEEEeeCC---ccccCC-CCc-ee-----------ecceEEEEeee--cCCeEEEEEEEecCcc
Q psy8771 120 DSPLNLSCVAVGSPMPFVKWRKGQ---NIELTP-DDK-LP-----------VGRNVLTLDRV--TESENYTCIAASVLGV 181 (904)
Q Consensus 120 g~~~~l~C~~~g~p~p~i~W~k~~---~~~~~~-~~~-~~-----------~~~~~l~i~~l--~d~g~Y~c~a~n~~g~ 181 (904)
|+.++|+|.+.|.|.|.|+|+|++ +..+.. +.. .. .....|.|.++ +|+|.|+|.|.|..|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 678999999999999999999962 222211 111 00 12357999988 7999999999999999
Q ss_pred eEEEEEEEEE
Q psy8771 182 IETSTIVKVQ 191 (904)
Q Consensus 182 ~~~~~~l~v~ 191 (904)
..+++.|.|.
T Consensus 81 ~~~sa~L~V~ 90 (90)
T cd04974 81 SHHSAWLTVL 90 (90)
T ss_pred ccCCEEEEeC
Confidence 9999999873
No 73
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.11 E-value=3.6e-10 Score=86.59 Aligned_cols=62 Identities=18% Similarity=0.211 Sum_probs=51.1
Q ss_pred eEEEEEEccCCCCeEEEeeCCccccCCC-CceeecceEEEEeee--cCCeEEEEEEEecCcceEEE
Q psy8771 123 LNLSCVAVGSPMPFVKWRKGQNIELTPD-DKLPVGRNVLTLDRV--TESENYTCIAASVLGVIETS 185 (904)
Q Consensus 123 ~~l~C~~~g~p~p~i~W~k~~~~~~~~~-~~~~~~~~~l~i~~l--~d~g~Y~c~a~n~~g~~~~~ 185 (904)
+.|.|.+.|.|.|++.|+|+ +..+... .++..++.+|.|.++ +|+|.|+|.|.|........
T Consensus 1 ~~l~c~v~g~P~P~v~W~kd-g~~l~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~ 65 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKD-GLPAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLGIKQYNLFKN 65 (72)
T ss_pred CeEEeeEEEcCCCeEEEEEC-CEECCCCCcEEEeCCCEEEECcCCHHHCEEEEEEEEccccceEee
Confidence 47999999999999999999 6676554 556666779999999 69999999999986654443
No 74
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.11 E-value=4.2e-10 Score=91.41 Aligned_cols=70 Identities=20% Similarity=0.369 Sum_probs=57.5
Q ss_pred CCeEEEEEEccCCCC--eEEEeeCCccccCCC---Cce---e--ecceEEEEeee--cCCeEEEEEEEecCcceEEEEEE
Q psy8771 121 SPLNLSCVAVGSPMP--FVKWRKGQNIELTPD---DKL---P--VGRNVLTLDRV--TESENYTCIAASVLGVIETSTIV 188 (904)
Q Consensus 121 ~~~~l~C~~~g~p~p--~i~W~k~~~~~~~~~---~~~---~--~~~~~l~i~~l--~d~g~Y~c~a~n~~g~~~~~~~l 188 (904)
+++.|.|.+.|.|.| .+.|+|+ +..+... .++ . ...+.|.|.++ +|+|.|+|.|.|..|..++++.|
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~-g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l 79 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFN-GVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADL 79 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEEC-CeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEE
Confidence 468999999999988 5689999 6665432 111 1 24678999999 69999999999999999999999
Q ss_pred EEE
Q psy8771 189 KVQ 191 (904)
Q Consensus 189 ~v~ 191 (904)
.|.
T Consensus 80 ~V~ 82 (85)
T cd04970 80 IVR 82 (85)
T ss_pred EEE
Confidence 998
No 75
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.11 E-value=2.9e-10 Score=93.30 Aligned_cols=75 Identities=19% Similarity=0.290 Sum_probs=62.9
Q ss_pred eEEecCCCeEEEEEEcc-----CCCCeEEEeeCCccccC----CCCceeecceEEEEeee--cCCeEEEEEEEecCcceE
Q psy8771 115 LEVMLDSPLNLSCVAVG-----SPMPFVKWRKGQNIELT----PDDKLPVGRNVLTLDRV--TESENYTCIAASVLGVIE 183 (904)
Q Consensus 115 ~~~~~g~~~~l~C~~~g-----~p~p~i~W~k~~~~~~~----~~~~~~~~~~~l~i~~l--~d~g~Y~c~a~n~~g~~~ 183 (904)
..+.+|+++.|.|.+.| .|.|.|.|+|+ +..+. ...|+...++.|.|.++ +|+|.|+|.+.|..|..+
T Consensus 9 ~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~-~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~~ 87 (94)
T cd05756 9 SYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKS-DGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNSTYCMK 87 (94)
T ss_pred EEEecCCCeEEECCCCCcccccCCCceEEEEEc-CCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcCCCccEE
Confidence 78889999999999999 78999999999 44332 23555556789999998 799999999999999988
Q ss_pred EEEEEEE
Q psy8771 184 TSTIVKV 190 (904)
Q Consensus 184 ~~~~l~v 190 (904)
..+.|.|
T Consensus 88 ~~~~L~v 94 (94)
T cd05756 88 VSISLTV 94 (94)
T ss_pred EEEEEEC
Confidence 8887765
No 76
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.11 E-value=3.4e-10 Score=89.94 Aligned_cols=65 Identities=22% Similarity=0.346 Sum_probs=52.2
Q ss_pred EEEEEEccCCCCeEEEeeCCccccCCCCceee-----------cceEEEEeee--cCCeEEEEEEEecCcceEEEEEEE
Q psy8771 124 NLSCVAVGSPMPFVKWRKGQNIELTPDDKLPV-----------GRNVLTLDRV--TESENYTCIAASVLGVIETSTIVK 189 (904)
Q Consensus 124 ~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~-----------~~~~l~i~~l--~d~g~Y~c~a~n~~g~~~~~~~l~ 189 (904)
.|.|.+.|.|.|+|+|+|+ |..+..+.++.. ..+.|.|.++ +|+|.|+|.|.|..|..++...+.
T Consensus 2 ~i~~~v~G~P~P~v~W~k~-g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 2 CIPFTVRGNPKPTLTWYHN-GAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred eEEEEeEeeCCCcEEEEEC-CEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 4789999999999999999 777765543321 1447999999 699999999999999988766553
No 77
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.10 E-value=4.3e-10 Score=91.19 Aligned_cols=75 Identities=32% Similarity=0.526 Sum_probs=60.2
Q ss_pred eEEecCCCeEEEEEEccCCCCeEEEeeCCccccCCCCcee--ecceEEEEeee--cCCeEEEEEEEecCcceEEEEEEEE
Q psy8771 115 LEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLP--VGRNVLTLDRV--TESENYTCIAASVLGVIETSTIVKV 190 (904)
Q Consensus 115 ~~~~~g~~~~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~--~~~~~l~i~~l--~d~g~Y~c~a~n~~g~~~~~~~l~v 190 (904)
+.+..|+++.|.|.+.|.|.|.|.|+|+ +..+....... .....|.|.++ +|+|.|+|.|.|..|..+....|.|
T Consensus 4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~-~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v 82 (82)
T cd05856 4 IARPVGSSVRLKCVASGNPRPDITWLKD-NKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVDV 82 (82)
T ss_pred eeccCCCeEEEEEEeeEeCCCcEEEEEC-CcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEeC
Confidence 5677899999999999999999999999 55554332222 24468999999 6999999999999998877766653
No 78
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.09 E-value=4.7e-10 Score=92.13 Aligned_cols=71 Identities=27% Similarity=0.533 Sum_probs=55.3
Q ss_pred CCCeEEEEEEccCCCCeEEEeeCC---ccccCCCCc--eee-----------cceEEEEeee--cCCeEEEEEEEecCcc
Q psy8771 120 DSPLNLSCVAVGSPMPFVKWRKGQ---NIELTPDDK--LPV-----------GRNVLTLDRV--TESENYTCIAASVLGV 181 (904)
Q Consensus 120 g~~~~l~C~~~g~p~p~i~W~k~~---~~~~~~~~~--~~~-----------~~~~l~i~~l--~d~g~Y~c~a~n~~g~ 181 (904)
|+.++|+|.+.|.|.|.|+|+|+. +..+..+.+ ..+ ....|.|.++ +|+|.|+|.|.|..|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 688999999999999999999841 332322111 111 1247999999 6999999999999999
Q ss_pred eEEEEEEEE
Q psy8771 182 IETSTIVKV 190 (904)
Q Consensus 182 ~~~~~~l~v 190 (904)
..+++.|.|
T Consensus 81 ~~~~a~L~V 89 (90)
T cd05858 81 SHHSAWLTV 89 (90)
T ss_pred ccceEEEEE
Confidence 999999887
No 79
>KOG4194|consensus
Probab=99.09 E-value=3.4e-09 Score=109.68 Aligned_cols=181 Identities=19% Similarity=0.283 Sum_probs=129.5
Q ss_pred Ccceeeeccc-----eEEEEecCCCCCc---ceeeEeeCCCCCCCCcEEEeccCCceEEEEeCCCCC-------------
Q psy8771 2 DTRCYVESPE-----EVFIILCPLPPLI---PGYILVTEPGTAPRDVQVRPLSSSTMVIQWDEPETP------------- 60 (904)
Q Consensus 2 ~~~~~~~~~~-----~~~~~~~~~~p~~---~~~~~~~~p~~~p~~l~~~~~~~~s~~v~W~~~~~~------------- 60 (904)
.|||||.+-= +.+.+-....|.. |..+... .+.-..+.|...+.+.++|.|.+....
T Consensus 588 rYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~--tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~Vm 665 (873)
T KOG4194|consen 588 RYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLR--TGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLHVM 665 (873)
T ss_pred eEEEEEecccCcchhheeEEEeeccCccccCcccceee--cccceeeeeeccCCCCcceeehhcCCCCCchhhhheeeec
Confidence 4899998743 2333333333322 3333322 235667889999999999999877433
Q ss_pred --CCceecccccccccceEEEEeeeccCCeeeeeeeeccCCCCCCCCeEEcCCCCceEEecCCCeEEEEEEccCCC-CeE
Q psy8771 61 --NGQITHPPTRAARSHARLAAQSVLRRGRLAHAVRQVADPVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPM-PFV 137 (904)
Q Consensus 61 --~g~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~~~~~~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~-p~i 137 (904)
+..+-.......|.+.+.|...+.+++..+.+.+.| ...|.+..+..+ ..+..|+.+.|+|.+.|.|. |.+
T Consensus 666 pedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V-----~e~p~f~~PL~~-~~V~~get~vlqC~a~~~~a~pr~ 739 (873)
T KOG4194|consen 666 PEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTV-----LETPSFSIPLED-QLVVVGETLVLQCLAEGAPADPRL 739 (873)
T ss_pred CCCCEEEEecccccccceeEEeeeccccceeeceEEEE-----ecCCcccccccc-eEEEecceEEEEEecCCCCCCccc
Confidence 222233334555667777888888888888888887 456777777888 99999999999999999998 999
Q ss_pred EEeeCCcccc--CCCCceeecceEEEEeee--cCCeEEEEEEEecCcceEEEEEEEEE
Q psy8771 138 KWRKGQNIEL--TPDDKLPVGRNVLTLDRV--TESENYTCIAASVLGVIETSTIVKVQ 191 (904)
Q Consensus 138 ~W~k~~~~~~--~~~~~~~~~~~~l~i~~l--~d~g~Y~c~a~n~~g~~~~~~~l~v~ 191 (904)
.|+|+ ..++ .+...+..++.-|.+.+. +|+|.|+|...|..|.......+.+.
T Consensus 740 ~W~k~-d~pil~t~rh~f~d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~ 796 (873)
T KOG4194|consen 740 EWFKE-DKPILITERHTFPDGDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVY 796 (873)
T ss_pred cccCC-CCceEEeecccCCCCCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEEe
Confidence 99998 4443 333344456677777775 89999999999999987777777666
No 80
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.08 E-value=8.4e-10 Score=90.96 Aligned_cols=78 Identities=24% Similarity=0.542 Sum_probs=61.9
Q ss_pred CeEEcCCCCceEEecC---CCeEEEEEEccCCCCeEEEeeCCccccC--CCCceeecceEEEEeee---cCCeEEEEEEE
Q psy8771 105 PQFSIPPPALLEVMLD---SPLNLSCVAVGSPMPFVKWRKGQNIELT--PDDKLPVGRNVLTLDRV---TESENYTCIAA 176 (904)
Q Consensus 105 P~~~~~~~~~~~~~~g---~~~~l~C~~~g~p~p~i~W~k~~~~~~~--~~~~~~~~~~~l~i~~l---~d~g~Y~c~a~ 176 (904)
|.|...|.+ +.+.++ +.+.|.|.+.|+|.|.|+|+|+ +..+. ...++...++.|.|.++ +|+|.|+|.|.
T Consensus 2 P~f~~~p~~-~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~-~~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~ 79 (91)
T cd04967 2 PVFEEQPDD-TIFPEESDEGKVSLNCRARGSPPPTYRWLMN-GTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLAS 79 (91)
T ss_pred CeeEeCCCC-EEccCCCCCCEEEEEEeeeEcCCCEEEEEEC-CEECCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEE
Confidence 567777777 655443 5799999999999999999999 66553 24556667788999876 59999999999
Q ss_pred ecCcceEE
Q psy8771 177 SVLGVIET 184 (904)
Q Consensus 177 n~~g~~~~ 184 (904)
|..|...+
T Consensus 80 N~~G~~~S 87 (91)
T cd04967 80 NIVGTVLS 87 (91)
T ss_pred cCCCEEEe
Confidence 99997554
No 81
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.07 E-value=1e-09 Score=90.32 Aligned_cols=80 Identities=23% Similarity=0.439 Sum_probs=60.2
Q ss_pred cCCCCceEEecCCCeEEEEEEccCCCCeEEEeeCCccccCCCCceee-----cceEEEEeee--cCCeEEEEEEEecCcc
Q psy8771 109 IPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPV-----GRNVLTLDRV--TESENYTCIAASVLGV 181 (904)
Q Consensus 109 ~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~-----~~~~l~i~~l--~d~g~Y~c~a~n~~g~ 181 (904)
..|.+ ..+..|+.+.|.|.+.|.|. .|+|+++++..+....++.. ....|+|.++ +|+|.|+|.|.|..|.
T Consensus 5 v~p~~-~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~ 82 (92)
T cd04977 5 IVPSQ-GEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGT 82 (92)
T ss_pred EecCc-EEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCC
Confidence 34556 88999999999999999985 89999853655544334332 2348999999 6999999999998754
Q ss_pred -eEEEEEEEE
Q psy8771 182 -IETSTIVKV 190 (904)
Q Consensus 182 -~~~~~~l~v 190 (904)
.++++.|.|
T Consensus 83 ~~~~sv~l~~ 92 (92)
T cd04977 83 ESEATVNLKI 92 (92)
T ss_pred cceeEEEEEC
Confidence 566666543
No 82
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.07 E-value=1.2e-08 Score=105.92 Aligned_cols=156 Identities=11% Similarity=0.125 Sum_probs=94.3
Q ss_pred eEEecCCCeEEEEEE-----ccCCCCeEEEeeCCccccCCCCceeecce-EEEEeee--cCCeEEEEEEEecCcceEEEE
Q psy8771 115 LEVMLDSPLNLSCVA-----VGSPMPFVKWRKGQNIELTPDDKLPVGRN-VLTLDRV--TESENYTCIAASVLGVIETST 186 (904)
Q Consensus 115 ~~~~~g~~~~l~C~~-----~g~p~p~i~W~k~~~~~~~~~~~~~~~~~-~l~i~~l--~d~g~Y~c~a~n~~g~~~~~~ 186 (904)
..+.+|+++.|.|.+ .|.|.++|+|+|+ +.... .++...++ .|.|.++ +|+|.|+|.|.|..|....++
T Consensus 36 ~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~-g~~~~--~~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~ 112 (326)
T PHA02785 36 FMELENEPVILPCPQINTLSSGYNILDILWEKR-GADND--RIIPIDNGSNMLILNPTQSDSGIYICITKNETYCDMMSL 112 (326)
T ss_pred hhhhcCCCEEEECCCccccccCCCCceEEEEEC-CCccc--eEEEccCCceEEEcccCcccCeEEEEEEECCCcceEEEE
Confidence 566789999999997 6999999999999 43221 23333333 4888877 699999999999999888888
Q ss_pred EEEEEeecCCCCCCCCCCcceEEEeecCCeEEEE----EeCCCccceEEEEEEEeCCCCCCeEEeecceeceEEEcCCCC
Q psy8771 187 IVKVQCKYAPLLTLPVAPLDVKISEVTATSVRLD----WTYPSETLLYYVIQYKPKAANTPYSEISGIITTYYTVRNLSP 262 (904)
Q Consensus 187 ~l~v~~~~~~~~~~P~~p~~l~~~~~~~~sv~l~----W~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p 262 (904)
.|.|.....+.+.. .+....+.......+.|. |...+ ..-.|.|...... ............+.|.+++.
T Consensus 113 ~L~V~~~~~~~~~~--~~~~~~~~~g~~~~i~C~~~~~~~~~~---~~~~i~W~k~~~~-~~~r~~~~~~~~L~i~~v~~ 186 (326)
T PHA02785 113 NLTIVSVSESNIDL--ISYPQIVNERSTGEMVCPNINAFIASN---VNADIIWSGHRRL-RNKRLKQRTPGIITIEDVRK 186 (326)
T ss_pred EEEEEecCCCccce--eeccceecccCcEEEECCChhhcccCC---CCceEEEccCCcc-CCcceEecCCCeEEEeecCh
Confidence 88887322111111 111112222222223331 11111 1112333221110 00111111235799999999
Q ss_pred CCeEEEEEEEEcCCCCC
Q psy8771 263 YTEYEFYIIAVNNLGRG 279 (904)
Q Consensus 263 ~~~Y~~~v~a~n~~g~s 279 (904)
.+.+.|+|.|.|..|..
T Consensus 187 ~d~G~Y~C~~~n~~g~~ 203 (326)
T PHA02785 187 NDAGYYTCVLKYIYGDK 203 (326)
T ss_pred hhCeEEEEEEEeccCCE
Confidence 99999999999987753
No 83
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=99.05 E-value=9e-10 Score=90.12 Aligned_cols=83 Identities=39% Similarity=0.694 Sum_probs=69.2
Q ss_pred CCCCeEEEecCCceEEEEecCCCCCCCceeeEEEEEEeCCCCCCcceEEEee-cCceEEEEcCCCCCCeEEEEEEEEeCC
Q psy8771 484 APRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVV-DNNQLTTISDLTPHTIYTIRVQAFTSV 562 (904)
Q Consensus 484 ~p~~l~v~~~~~~~~~l~W~~p~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~p~t~Y~~~V~a~~~~ 562 (904)
+|.++++..++.+++.|+|+++...++.+.+|.|+|+...+.. .+..... .....+.+.+|.|++.|.|+|+|++..
T Consensus 2 ~P~~l~v~~~~~~sv~v~W~~~~~~~~~~~~y~v~~~~~~~~~--~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~a~~~~ 79 (85)
T PF00041_consen 2 APENLSVSNISPTSVTVSWKPPSSGNGPITGYRVEYRSVNSTS--DWQEVTVPGNETSYTITGLQPGTTYEFRVRAVNSD 79 (85)
T ss_dssp SSEEEEEEEECSSEEEEEEEESSSTSSSESEEEEEEEETTSSS--EEEEEEEETTSSEEEEESCCTTSEEEEEEEEEETT
T ss_pred cCcCeEEEECCCCEEEEEEECCCCCCCCeeEEEEEEEecccce--eeeeeeeeeeeeeeeeccCCCCCEEEEEEEEEeCC
Confidence 6889999999999999999998766789999999999887543 2333333 555689999999999999999999999
Q ss_pred CCCCCC
Q psy8771 563 GPGPLS 568 (904)
Q Consensus 563 g~~~~S 568 (904)
|.|++|
T Consensus 80 g~g~~S 85 (85)
T PF00041_consen 80 GEGPPS 85 (85)
T ss_dssp EEEEEE
T ss_pred cCcCCC
Confidence 877654
No 84
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=99.04 E-value=7.7e-10 Score=90.53 Aligned_cols=83 Identities=27% Similarity=0.498 Sum_probs=70.8
Q ss_pred CCCcceEEEeeccceEEEeccCCCCCCCceeeEEEEEEeCCccc-cc-eEEecccceEEEeCCCCCcEEEEEEEEEcCCC
Q psy8771 622 AKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKA-KH-HRRIGLVETYSLTGLYPNTLYYIWLAAQSPRG 699 (904)
Q Consensus 622 ~~p~~l~~~~~~~~~~~l~w~~~~~~~~~~~~y~v~~~~~~~~~-~~-~~~~~~~~~~~l~~L~p~t~Y~v~V~a~~~~G 699 (904)
++|.+|++..++.+++.|+|.++...++.+.+|.|+|+...... .. .........+.|.+|.|++.|.|+|+|++..|
T Consensus 1 s~P~~l~v~~~~~~sv~v~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~a~~~~g 80 (85)
T PF00041_consen 1 SAPENLSVSNISPTSVTVSWKPPSSGNGPITGYRVEYRSVNSTSDWQEVTVPGNETSYTITGLQPGTTYEFRVRAVNSDG 80 (85)
T ss_dssp SSSEEEEEEEECSSEEEEEEEESSSTSSSESEEEEEEEETTSSSEEEEEEEETTSSEEEEESCCTTSEEEEEEEEEETTE
T ss_pred CcCcCeEEEECCCCEEEEEEECCCCCCCCeeEEEEEEEecccceeeeeeeeeeeeeeeeeccCCCCCEEEEEEEEEeCCc
Confidence 47899999999999999999998777889999999999987776 32 33344455999999999999999999999998
Q ss_pred CCCCC
Q psy8771 700 EGATT 704 (904)
Q Consensus 700 ~~~~s 704 (904)
.|++|
T Consensus 81 ~g~~S 85 (85)
T PF00041_consen 81 EGPPS 85 (85)
T ss_dssp EEEEE
T ss_pred CcCCC
Confidence 87653
No 85
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=98.99 E-value=1.9e-09 Score=85.40 Aligned_cols=68 Identities=32% Similarity=0.621 Sum_probs=55.9
Q ss_pred eEEEEEEccCCCCeEEEeeCCccccCCC--Cceee--cceEEEEeee--cCCeEEEEEEEecCcceEEEEEEEEE
Q psy8771 123 LNLSCVAVGSPMPFVKWRKGQNIELTPD--DKLPV--GRNVLTLDRV--TESENYTCIAASVLGVIETSTIVKVQ 191 (904)
Q Consensus 123 ~~l~C~~~g~p~p~i~W~k~~~~~~~~~--~~~~~--~~~~l~i~~l--~d~g~Y~c~a~n~~g~~~~~~~l~v~ 191 (904)
+.|.|.+.|.|.|.|.|+|+ +..+... .++.. +...|.|.++ +|.|.|+|.|.|..|..+..+.|.|.
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~-~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKN-GMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred CEeEeEeeecCCCEEEEEEC-CEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 47999999999999999999 5555443 23332 3347999999 69999999999999999999999886
No 86
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.98 E-value=2e-09 Score=84.82 Aligned_cols=61 Identities=21% Similarity=0.475 Sum_probs=48.3
Q ss_pred eEEEEEEccCCCCeEEEeeCCccccC--CCCceee--cceEEEEeeec------CCeEEEEEEEecCcceEE
Q psy8771 123 LNLSCVAVGSPMPFVKWRKGQNIELT--PDDKLPV--GRNVLTLDRVT------ESENYTCIAASVLGVIET 184 (904)
Q Consensus 123 ~~l~C~~~g~p~p~i~W~k~~~~~~~--~~~~~~~--~~~~l~i~~l~------d~g~Y~c~a~n~~g~~~~ 184 (904)
+.|.|.+.|.|.|+|+|+|+ +..+. ...++.. .+++|.|..+. |.|.|+|.|.|..|...+
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~-g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRN-GTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEEC-CeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence 47999999999999999999 66552 2333433 57889998773 689999999999998655
No 87
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.98 E-value=2.2e-09 Score=86.57 Aligned_cols=71 Identities=20% Similarity=0.426 Sum_probs=55.2
Q ss_pred CCCeEEEEEEccCCCCeEEEeeCCc--cc--cCCC---Ccee-ecceEEEEeee--cCCeEEEEEEEecCcceEEEEEEE
Q psy8771 120 DSPLNLSCVAVGSPMPFVKWRKGQN--IE--LTPD---DKLP-VGRNVLTLDRV--TESENYTCIAASVLGVIETSTIVK 189 (904)
Q Consensus 120 g~~~~l~C~~~g~p~p~i~W~k~~~--~~--~~~~---~~~~-~~~~~l~i~~l--~d~g~Y~c~a~n~~g~~~~~~~l~ 189 (904)
|+.+.|.|.+.|.|.|.|+|+|+.. .. +... .++. .+.+.|.|.++ +|+|.|+|.|.|..|...+.+.|.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 80 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLS 80 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEEe
Confidence 7899999999999999999999721 11 1111 1122 24568999999 699999999999999988888876
Q ss_pred E
Q psy8771 190 V 190 (904)
Q Consensus 190 v 190 (904)
|
T Consensus 81 v 81 (81)
T cd05765 81 V 81 (81)
T ss_pred C
Confidence 5
No 88
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=98.97 E-value=4.1e-09 Score=85.63 Aligned_cols=76 Identities=21% Similarity=0.352 Sum_probs=61.9
Q ss_pred cCCCCceEEecCCCeEEEEEEcc-CCCCeEEEeeCCccccCCCCceeecceEEEEeee--cCCeEEEEEEEecCcceEEE
Q psy8771 109 IPPPALLEVMLDSPLNLSCVAVG-SPMPFVKWRKGQNIELTPDDKLPVGRNVLTLDRV--TESENYTCIAASVLGVIETS 185 (904)
Q Consensus 109 ~~~~~~~~~~~g~~~~l~C~~~g-~p~p~i~W~k~~~~~~~~~~~~~~~~~~l~i~~l--~d~g~Y~c~a~n~~g~~~~~ 185 (904)
..|.. +.+.+|+.++|.|.+.+ .|.+.|.|+++ +..+.. +....++.|.|.++ +|+|.|.|.|.|..|..++.
T Consensus 6 ~~p~~-~~v~~G~~v~L~C~~~~~~~~~~i~W~~~-~~~~~~--~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~ 81 (85)
T cd05754 6 EEPRS-QEVRPGADVSFICRAKSKSPAYTLVWTRV-GGGLPS--RAMDFNGILTIRNVQLSDAGTYVCTGSNMLDTDEAT 81 (85)
T ss_pred cCCCc-eEEcCCCCEEEEEEcCCCCCCcEEEEEEC-CCcCCC--cccccCCEEEECCCCHHHCEEEEEEEeccCCeEeEE
Confidence 44555 89999999999999975 78899999998 444433 22335678999999 69999999999999999888
Q ss_pred EEE
Q psy8771 186 TIV 188 (904)
Q Consensus 186 ~~l 188 (904)
+.|
T Consensus 82 ~~l 84 (85)
T cd05754 82 ATL 84 (85)
T ss_pred EEE
Confidence 776
No 89
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.97 E-value=2.2e-09 Score=85.73 Aligned_cols=67 Identities=21% Similarity=0.467 Sum_probs=51.3
Q ss_pred eEEEEEEccCCCCeEEEeeCCccccC-------CCCceee-cceEEEEeee--cCCeEEEEEEEecCcce-EEEEEEE
Q psy8771 123 LNLSCVAVGSPMPFVKWRKGQNIELT-------PDDKLPV-GRNVLTLDRV--TESENYTCIAASVLGVI-ETSTIVK 189 (904)
Q Consensus 123 ~~l~C~~~g~p~p~i~W~k~~~~~~~-------~~~~~~~-~~~~l~i~~l--~d~g~Y~c~a~n~~g~~-~~~~~l~ 189 (904)
++|.|.+.|.|.|.|+|+|+++.... ...|+.. .+++|.|.++ +|.|.|+|.|.|..|.. +..+.|.
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~ 78 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLT 78 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEe
Confidence 57999999999999999996332211 2345443 5689999999 69999999999999985 4555554
No 90
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=98.96 E-value=5.8e-09 Score=83.12 Aligned_cols=66 Identities=21% Similarity=0.380 Sum_probs=55.6
Q ss_pred CCCceEEecCCCeEEEEEEccCCCCeEEEeeCCccccCCC-CceeecceEEEEeee--cCCeEEEEEEEecC
Q psy8771 111 PPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPD-DKLPVGRNVLTLDRV--TESENYTCIAASVL 179 (904)
Q Consensus 111 ~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~k~~~~~~~~~-~~~~~~~~~l~i~~l--~d~g~Y~c~a~n~~ 179 (904)
|.+ +.+..|+++.|.|.+.+ |.+.|+|+++ |..+..+ .++.+.++.|.|.++ +|+|.|+|.|.+..
T Consensus 3 P~~-~~v~~G~~v~L~C~~~~-~~~~i~W~~n-g~~i~~~~~r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 3 PRQ-RTFKLGNNAELKCSPKS-NLARVVWKFD-GKVLTPESAKYLLYRDGLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred cce-EEEECCCCEEEEEECCC-CCCeEEEEEC-CEECCCCCceEEEECCcEEEeCCCHHHCEEEEEEEEecc
Confidence 556 89999999999999854 7789999999 7666554 577778889999999 69999999998753
No 91
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=98.95 E-value=1.3e-08 Score=98.60 Aligned_cols=148 Identities=10% Similarity=0.122 Sum_probs=97.1
Q ss_pred eEEecCCCeEEEEEEccCCC-----------CeEEEeeCCccccC--CCCc----------eeecceEEEEeee--cCCe
Q psy8771 115 LEVMLDSPLNLSCVAVGSPM-----------PFVKWRKGQNIELT--PDDK----------LPVGRNVLTLDRV--TESE 169 (904)
Q Consensus 115 ~~~~~g~~~~l~C~~~g~p~-----------p~i~W~k~~~~~~~--~~~~----------~~~~~~~l~i~~l--~d~g 169 (904)
+.+.+|+++.|.|.+.+.|+ +.|.|+|++...+. .+.| +...+++|.|.++ +|+|
T Consensus 32 ~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~DsG 111 (227)
T PHA02826 32 VYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINIDEG 111 (227)
T ss_pred EEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHHCE
Confidence 88899999999999988653 48999998432111 1111 1223579999999 6999
Q ss_pred EEEEEEEecCcceEEEEEEEEEeecCCCCCCCCCCcceEEEeecCCeEEEEEeCCCcc---ceEEEEEEEeCCCC----C
Q psy8771 170 NYTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISEVTATSVRLDWTYPSET---LLYYVIQYKPKAAN----T 242 (904)
Q Consensus 170 ~Y~c~a~n~~g~~~~~~~l~v~~~~~~~~~~P~~p~~l~~~~~~~~sv~l~W~~~~~~---~~~y~v~~~~~~~~----~ 242 (904)
.|+|.|.|..|..+....|.|. .. +.++.+. ....+.|.+...++. .....|.|..++.. .
T Consensus 112 ~Y~C~a~N~~~~~~~~i~L~V~-------~~---~~~~~~~--~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~ 179 (227)
T PHA02826 112 IYICTISSGNICEESTIRLTFD-------SG---TINYQFN--SGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTD 179 (227)
T ss_pred EEEEEEEECCcceEEEEEEEEe-------cC---CccceEe--cCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCC
Confidence 9999999988888888888876 21 2233332 234566666543211 11234555544321 1
Q ss_pred CeEEeecceeceEEEcCCCCCCeEEEEEEEEcCC
Q psy8771 243 PYSEISGIITTYYTVRNLSPYTEYEFYIIAVNNL 276 (904)
Q Consensus 243 ~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~ 276 (904)
.+. +. .....+.|.+++..+.+.|+|.|....
T Consensus 180 r~~-~~-~~~~~L~I~~V~~~DsG~YtC~a~~~~ 211 (227)
T PHA02826 180 RIQ-LR-NNNSTLVIKSATHDDSGIYTCNLRFNK 211 (227)
T ss_pred CEE-Ee-CCCCEEEECcCCHHhCEEEEEEEEEeE
Confidence 111 11 223579999999999999999998864
No 92
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=98.95 E-value=3.1e-09 Score=83.76 Aligned_cols=62 Identities=23% Similarity=0.513 Sum_probs=48.9
Q ss_pred eEEEEEEccCCCCeEEEeeCCcccc--CCCCceee--cceEEEEeee-----c-CCeEEEEEEEecCcceEEE
Q psy8771 123 LNLSCVAVGSPMPFVKWRKGQNIEL--TPDDKLPV--GRNVLTLDRV-----T-ESENYTCIAASVLGVIETS 185 (904)
Q Consensus 123 ~~l~C~~~g~p~p~i~W~k~~~~~~--~~~~~~~~--~~~~l~i~~l-----~-d~g~Y~c~a~n~~g~~~~~ 185 (904)
+.|+|.+.|.|.|.|+|+|+ +..+ ..+.++.+ .+++|.|.++ + |+|.|+|.|.|..|...+.
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~-g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRN-GKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN 72 (77)
T ss_pred CEEEEeccccCCCEEEEEEC-CEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence 47999999999999999999 6544 33444443 5789999875 2 5899999999999986543
No 93
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=98.93 E-value=2.5e-09 Score=84.69 Aligned_cols=61 Identities=25% Similarity=0.603 Sum_probs=48.7
Q ss_pred eEEEEEEccCCCCeEEEeeCCccccCC--CCceee--cceEEEEeee------cCCeEEEEEEEecCcceEE
Q psy8771 123 LNLSCVAVGSPMPFVKWRKGQNIELTP--DDKLPV--GRNVLTLDRV------TESENYTCIAASVLGVIET 184 (904)
Q Consensus 123 ~~l~C~~~g~p~p~i~W~k~~~~~~~~--~~~~~~--~~~~l~i~~l------~d~g~Y~c~a~n~~g~~~~ 184 (904)
+.|.|.+.|.|.|.|+|+|+ +..+.. ..++.. .++.|.|.++ +|+|.|+|.|.|..|...+
T Consensus 1 i~l~C~~~G~P~P~v~W~k~-g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRN-GTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEEC-CeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 47999999999999999999 666542 234433 5689999886 3789999999999998544
No 94
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=98.93 E-value=5.6e-09 Score=85.64 Aligned_cols=75 Identities=17% Similarity=0.372 Sum_probs=56.6
Q ss_pred eEEecCCCeEEEEEEccCCCCeEEEeeCCcccc-------CCCCceee-----cceEEEEeee--cCCeEEEEEEEecCc
Q psy8771 115 LEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIEL-------TPDDKLPV-----GRNVLTLDRV--TESENYTCIAASVLG 180 (904)
Q Consensus 115 ~~~~~g~~~~l~C~~~g~p~p~i~W~k~~~~~~-------~~~~~~~~-----~~~~l~i~~l--~d~g~Y~c~a~n~~g 180 (904)
+++.+|+++.|.|.+.|.|.|.|.|+|+++..+ ....|+.+ .+.+|.|.++ +|+|.|+|.+.. .-
T Consensus 7 ~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t-~~ 85 (95)
T cd05882 7 ETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT-MP 85 (95)
T ss_pred EEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe-ec
Confidence 899999999999999999999999999843221 12244442 2468999999 799999999987 33
Q ss_pred ceEEEEEEEE
Q psy8771 181 VIETSTIVKV 190 (904)
Q Consensus 181 ~~~~~~~l~v 190 (904)
..++.+.|.|
T Consensus 86 ~~~~~~~~~v 95 (95)
T cd05882 86 VRTAKATVTV 95 (95)
T ss_pred cccEEEEEEC
Confidence 4555555543
No 95
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=98.92 E-value=3.6e-08 Score=95.45 Aligned_cols=105 Identities=10% Similarity=0.039 Sum_probs=72.2
Q ss_pred eecccccccccceEEEEeeeccCCeeeeeeeeccCCCCCCCCeEEcCCCCceEEecCCCeEEEEEEcc-----CCCCeEE
Q psy8771 64 ITHPPTRAARSHARLAAQSVLRRGRLAHAVRQVADPVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVG-----SPMPFVK 138 (904)
Q Consensus 64 i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~~~~~~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g-----~p~p~i~ 138 (904)
+........|.+...|.+.+........+.+.|.+ .+.+ ..+.+|+.+.|.|.+.+ .|.|+|+
T Consensus 100 L~I~~v~~~DsG~Y~C~a~N~~~~~~~~i~L~V~~-----------~~~~-~~~~~G~~v~L~C~~~~~~~~~~p~p~I~ 167 (227)
T PHA02826 100 LWIGNVINIDEGIYICTISSGNICEESTIRLTFDS-----------GTIN-YQFNSGKDSKLHCYGTDGISSTFKDYTLT 167 (227)
T ss_pred EEECCCChHHCEEEEEEEEECCcceEEEEEEEEec-----------CCcc-ceEecCCCEEEEeeCCCCccccCCCceEE
Confidence 33333444466666677666443334444444421 1123 67789999999999873 4679999
Q ss_pred EeeCCccccCCCCceee--cceEEEEeee--cCCeEEEEEEEecCcc
Q psy8771 139 WRKGQNIELTPDDKLPV--GRNVLTLDRV--TESENYTCIAASVLGV 181 (904)
Q Consensus 139 W~k~~~~~~~~~~~~~~--~~~~l~i~~l--~d~g~Y~c~a~n~~g~ 181 (904)
|+|+ +..+..+.++.+ +++.|.|.++ +|+|.|+|.|....+.
T Consensus 168 WyKn-g~~l~~~~r~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~~~g 213 (227)
T PHA02826 168 WYKN-GNIVLYTDRIQLRNNNSTLVIKSATHDDSGIYTCNLRFNKNS 213 (227)
T ss_pred EEEC-CEECCCCCCEEEeCCCCEEEECcCCHHhCEEEEEEEEEeECC
Confidence 9999 777766666664 4568999999 6999999999886544
No 96
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.90 E-value=5.7e-09 Score=82.09 Aligned_cols=66 Identities=20% Similarity=0.398 Sum_probs=53.5
Q ss_pred CeEEcCCCCceEEecCCCeEEEEEEccCCC-CeEEEeeCCccccCCCCceeecceEEEEeee-cCCeEEEEEEEec
Q psy8771 105 PQFSIPPPALLEVMLDSPLNLSCVAVGSPM-PFVKWRKGQNIELTPDDKLPVGRNVLTLDRV-TESENYTCIAASV 178 (904)
Q Consensus 105 P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~-p~i~W~k~~~~~~~~~~~~~~~~~~l~i~~l-~d~g~Y~c~a~n~ 178 (904)
|.+...|.. ..+.+|++++|.|.+.|.|. +.+.|+|+ +..+. ...+.|.|.++ +|+|.|+|.|.|.
T Consensus 1 ~vv~~~P~~-~~v~~G~~V~L~C~~~~~p~~~~~~W~kn-g~~l~------~~~~~l~i~~~~~dsG~Y~C~a~~~ 68 (78)
T cd05752 1 AVVSLDPPW-TTIFQGEKVTLTCNGFNSPEQNSTQWYHN-GKLLE------TTTNSYRIRAANNDSGEYRCQTQGS 68 (78)
T ss_pred CeEEeCCCC-eEeeCCCCEEEEEeCCCCCCCccEEEEEC-CEEee------ccCCeEEEeecccCCEEeEEECCCC
Confidence 345666666 89999999999999999987 46999999 65542 24567888886 8999999999874
No 97
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=98.89 E-value=5.2e-09 Score=82.90 Aligned_cols=64 Identities=28% Similarity=0.493 Sum_probs=51.0
Q ss_pred eEEEEEEcc-CCCCeEEEeeCCccccCCCCcee---e----cceEEEEeee--cCCeEEEEEEEecCcceEEEEE
Q psy8771 123 LNLSCVAVG-SPMPFVKWRKGQNIELTPDDKLP---V----GRNVLTLDRV--TESENYTCIAASVLGVIETSTI 187 (904)
Q Consensus 123 ~~l~C~~~g-~p~p~i~W~k~~~~~~~~~~~~~---~----~~~~l~i~~l--~d~g~Y~c~a~n~~g~~~~~~~ 187 (904)
+.|.|.+.| .|.|.+.|+|+ +..+....+.. + ....|.|.++ +|.|.|+|.|.|..|....++.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~-g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKD-GKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CEEEEEccCCCCCceEEEEcC-CeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 469999999 99999999999 66665443321 2 3468999998 6999999999999998776653
No 98
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=98.88 E-value=2.3e-08 Score=81.74 Aligned_cols=82 Identities=18% Similarity=0.333 Sum_probs=62.9
Q ss_pred CCeEEcCCCCceEEecCCCeEEEEEEccCCCC-eEEEeeCCccccCC--CCceee--------cceEEEEeee--cC-Ce
Q psy8771 104 PPQFSIPPPALLEVMLDSPLNLSCVAVGSPMP-FVKWRKGQNIELTP--DDKLPV--------GRNVLTLDRV--TE-SE 169 (904)
Q Consensus 104 ~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p-~i~W~k~~~~~~~~--~~~~~~--------~~~~l~i~~l--~d-~g 169 (904)
||.|.. ... ..+.+|+.++|.|.+.+.|.| .|.|..+ +..+.. ..|+.+ ....|.|.++ +| .|
T Consensus 2 pP~i~~-~~s-~~~~~G~~~~L~C~~~s~P~P~~i~W~w~-~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g 78 (98)
T cd05898 2 PPIISS-EQV-QYAVRGERGKVKCFIGSTPPPDRIAWAWK-ENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQT 78 (98)
T ss_pred CCEEec-Cce-EEEeCCCcEEEEEEEccCCCCcEEEEEEc-cccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCc
Confidence 677743 333 899999999999999999987 5788887 445543 356654 2347999999 35 79
Q ss_pred EEEEEEEecCcceEEEEEE
Q psy8771 170 NYTCIAASVLGVIETSTIV 188 (904)
Q Consensus 170 ~Y~c~a~n~~g~~~~~~~l 188 (904)
.|.|.|.|.+|.....+.|
T Consensus 79 ~Y~C~a~N~~G~d~~~i~L 97 (98)
T cd05898 79 HYNCTAWNSFGSGTAIIQL 97 (98)
T ss_pred EEEEEEEeCCccceEEEEe
Confidence 9999999999998877665
No 99
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=98.87 E-value=1.4e-08 Score=83.76 Aligned_cols=77 Identities=16% Similarity=0.329 Sum_probs=58.4
Q ss_pred CCceEEecCCCeEEEEEEccCCCCeEEEeeCCcc-------ccCCCCceee-----cceEEEEeee--cCCeEEEEEEEe
Q psy8771 112 PALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNI-------ELTPDDKLPV-----GRNVLTLDRV--TESENYTCIAAS 177 (904)
Q Consensus 112 ~~~~~~~~g~~~~l~C~~~g~p~p~i~W~k~~~~-------~~~~~~~~~~-----~~~~l~i~~l--~d~g~Y~c~a~n 177 (904)
++ +.+.+|++++|+|.+.|.|.+.|.|++.++. ....+.|+.. ...+|.|.++ +|+|.|.|.+.+
T Consensus 5 ~~-v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t 83 (95)
T cd07701 5 QN-VTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFT 83 (95)
T ss_pred ce-EEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEe
Confidence 45 9999999999999999999999999874221 1122345543 3468999999 799999999998
Q ss_pred cCcceEEEEEEEE
Q psy8771 178 VLGVIETSTIVKV 190 (904)
Q Consensus 178 ~~g~~~~~~~l~v 190 (904)
. ....+.+.|.|
T Consensus 84 ~-~~~~~~~~l~v 95 (95)
T cd07701 84 M-PVKTSKAYLTV 95 (95)
T ss_pred e-cCccEEEEEEC
Confidence 4 44477777764
No 100
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.86 E-value=1.1e-08 Score=82.43 Aligned_cols=76 Identities=18% Similarity=0.287 Sum_probs=61.1
Q ss_pred CeEEcCCCCceEEecCCCeEEEEE-EccCCCCeEEEeeCCccccCCCCceee-cceEEEEeee--cCCe-EEEEEEEecC
Q psy8771 105 PQFSIPPPALLEVMLDSPLNLSCV-AVGSPMPFVKWRKGQNIELTPDDKLPV-GRNVLTLDRV--TESE-NYTCIAASVL 179 (904)
Q Consensus 105 P~~~~~~~~~~~~~~g~~~~l~C~-~~g~p~p~i~W~k~~~~~~~~~~~~~~-~~~~l~i~~l--~d~g-~Y~c~a~n~~ 179 (904)
|+|.......+.+.+|+.+.|.|. ..|.|.|.|.|.+++...+..+.|+.+ .+|.|.|.++ +|+| .|.|.|.|..
T Consensus 3 ~~~~~~~~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~ 82 (95)
T cd05845 3 PKWPKEKIRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPG 82 (95)
T ss_pred CcCCccccceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCCceEEEEEEehhhCCCCeEEEEEccc
Confidence 344444333499999999999997 799999999999985555666777776 5799999999 6998 7999999876
Q ss_pred c
Q psy8771 180 G 180 (904)
Q Consensus 180 g 180 (904)
.
T Consensus 83 ~ 83 (95)
T cd05845 83 L 83 (95)
T ss_pred c
Confidence 4
No 101
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=98.85 E-value=1.5e-08 Score=82.07 Aligned_cols=70 Identities=21% Similarity=0.243 Sum_probs=54.6
Q ss_pred CCCeEEEEEEccC--CCCeEEEeeCCccccCCCC----c-e----eecceEEEEeee--cCCeEEEEEEEecCcceEEEE
Q psy8771 120 DSPLNLSCVAVGS--PMPFVKWRKGQNIELTPDD----K-L----PVGRNVLTLDRV--TESENYTCIAASVLGVIETST 186 (904)
Q Consensus 120 g~~~~l~C~~~g~--p~p~i~W~k~~~~~~~~~~----~-~----~~~~~~l~i~~l--~d~g~Y~c~a~n~~g~~~~~~ 186 (904)
|+.+.|.|.+.|. |.|.|.|.++ +..+.... + . ......|.|.++ +|+|.|+|.|.|..|..++++
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~-~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~ 79 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYP-GKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKEST 79 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecC-CcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEE
Confidence 7899999999999 8899999987 43322111 1 1 113458999998 699999999999999998888
Q ss_pred EEEE
Q psy8771 187 IVKV 190 (904)
Q Consensus 187 ~l~v 190 (904)
.|.|
T Consensus 80 ~v~v 83 (84)
T cd05742 80 KVNI 83 (84)
T ss_pred EEEE
Confidence 8776
No 102
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=98.83 E-value=2.2e-08 Score=82.08 Aligned_cols=75 Identities=19% Similarity=0.249 Sum_probs=58.9
Q ss_pred eEEecCCCeEEEEEEccCCCCeEEEeeCCccccCCC----CceeecceEEEEeee--cCCeEEEEEEEecC-cceEEEEE
Q psy8771 115 LEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPD----DKLPVGRNVLTLDRV--TESENYTCIAASVL-GVIETSTI 187 (904)
Q Consensus 115 ~~~~~g~~~~l~C~~~g~p~p~i~W~k~~~~~~~~~----~~~~~~~~~l~i~~l--~d~g~Y~c~a~n~~-g~~~~~~~ 187 (904)
+.+.+|+++.|+|.+.+ |.+.+.|+|+ +..+... .++....+.|.|.++ +|+|.|.|.|.+.. +...++..
T Consensus 6 ~~v~~g~~v~L~C~~~~-p~~~i~W~k~-~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~~ 83 (89)
T cd04979 6 VTVVEGNSVFLECSPKS-NLASVVWLFQ-GGPLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQSVEHGFKQTLATYS 83 (89)
T ss_pred EEEECCCcEEEEEeCCC-CCceEEEEEC-CcccccccCcCceEEEcCCCEEEccCCHHHCEEEEEEEecCccceeEeEEE
Confidence 88899999999999988 8889999999 5444332 456566667999998 69999999998754 44566666
Q ss_pred EEEE
Q psy8771 188 VKVQ 191 (904)
Q Consensus 188 l~v~ 191 (904)
|.|.
T Consensus 84 l~V~ 87 (89)
T cd04979 84 LNVL 87 (89)
T ss_pred EEEe
Confidence 6665
No 103
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=98.83 E-value=2.2e-08 Score=81.58 Aligned_cols=76 Identities=20% Similarity=0.257 Sum_probs=61.8
Q ss_pred eEEecCCCeEEEEEEccC-----CCCeEEEeeCCccccCCCCceeecceEEEEeee--cCCeEEEEEEEecCcceEEEEE
Q psy8771 115 LEVMLDSPLNLSCVAVGS-----PMPFVKWRKGQNIELTPDDKLPVGRNVLTLDRV--TESENYTCIAASVLGVIETSTI 187 (904)
Q Consensus 115 ~~~~~g~~~~l~C~~~g~-----p~p~i~W~k~~~~~~~~~~~~~~~~~~l~i~~l--~d~g~Y~c~a~n~~g~~~~~~~ 187 (904)
..+.+|+++.|.|...+. |.|.|.|+|+ +..+....+....++.|.|.++ +|+|.|+|.|.|..|.......
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~-~~~i~~~~~~~~~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~~~t 83 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKD-CKLLEGDRKRFVKGSKLLIQNVTEEDAGNYTCKLTFTHNGKQYNVT 83 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCCcEEEeEC-CEECCCCccEEecCCEEEEeeCChhhCEEEEEEEEecCCCEEEEEE
Confidence 778899999999988753 5789999999 7777655444447889999999 6999999999999988776665
Q ss_pred EEEE
Q psy8771 188 VKVQ 191 (904)
Q Consensus 188 l~v~ 191 (904)
+.+.
T Consensus 84 ~t~~ 87 (92)
T cd05757 84 RTIS 87 (92)
T ss_pred EEEE
Confidence 5554
No 104
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=98.81 E-value=3.7e-08 Score=80.43 Aligned_cols=75 Identities=29% Similarity=0.515 Sum_probs=59.9
Q ss_pred eEEecCCCeEEEEEEccCCCCeEEEeeCCccccCCCCceee-----cceEEEEeee--cCCeEEEEEEEecCcceEEEEE
Q psy8771 115 LEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPV-----GRNVLTLDRV--TESENYTCIAASVLGVIETSTI 187 (904)
Q Consensus 115 ~~~~~g~~~~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~-----~~~~l~i~~l--~d~g~Y~c~a~n~~g~~~~~~~ 187 (904)
+.+..|+.+.|.|.+.|.|.+.|.|+|+ +..+....+... ....|.|.++ +|.|.|.|.+.|..|..+.+..
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~ 82 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRPTITWLKD-GKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYK 82 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCCeEEEEEC-CEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEE
Confidence 5677899999999999999999999999 655544333221 2347899998 6999999999999999877776
Q ss_pred EEE
Q psy8771 188 VKV 190 (904)
Q Consensus 188 l~v 190 (904)
|.|
T Consensus 83 l~v 85 (85)
T cd05729 83 VDV 85 (85)
T ss_pred EeC
Confidence 653
No 105
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.80 E-value=4.3e-08 Score=79.93 Aligned_cols=76 Identities=20% Similarity=0.304 Sum_probs=59.7
Q ss_pred eEEecCCCeEEEEEEccCCCCeEEEeeCC-ccc----cCCCCceeecceEEEEeee--cCCeEEEEEEE-ecCcceEEEE
Q psy8771 115 LEVMLDSPLNLSCVAVGSPMPFVKWRKGQ-NIE----LTPDDKLPVGRNVLTLDRV--TESENYTCIAA-SVLGVIETST 186 (904)
Q Consensus 115 ~~~~~g~~~~l~C~~~g~p~p~i~W~k~~-~~~----~~~~~~~~~~~~~l~i~~l--~d~g~Y~c~a~-n~~g~~~~~~ 186 (904)
+.+.+|+.+.|+|.. +.|.|.|.|+|.+ +.. +....++...+++|.|.++ +|+|.|+|.|. |..+.....+
T Consensus 6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~~ 84 (91)
T cd05871 6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRSDAGVYTCTAVEHSFSQTLAKY 84 (91)
T ss_pred EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEecCeEEEeeCChhHCEEEEEEEEccCCeEEEEEE
Confidence 778999999999996 6899999999842 211 2234566667788999999 69999999997 5767677788
Q ss_pred EEEEE
Q psy8771 187 IVKVQ 191 (904)
Q Consensus 187 ~l~v~ 191 (904)
+|.|.
T Consensus 85 ~l~v~ 89 (91)
T cd05871 85 TLHVI 89 (91)
T ss_pred EEEEe
Confidence 88775
No 106
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=98.76 E-value=6.6e-06 Score=80.96 Aligned_cols=134 Identities=19% Similarity=0.259 Sum_probs=85.5
Q ss_pred cccceEEEeCCCCCcEEEEEEEEEcCCCCCCCCCCee-EEecCC---CCCCCCCCcEEEecC----CCEEEEEecCCCCC
Q psy8771 672 GLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIP-VRTKQY---VPGAPPQNVSCEPLS----STSIRISWEPPPVE 743 (904)
Q Consensus 672 ~~~~~~~l~~L~p~t~Y~v~V~a~~~~G~~~~s~~~~-~~t~~~---~p~~~P~~l~~~~~~----~~~v~l~W~~~~~~ 743 (904)
..-..+.+.|+.||..|.+++.+.+... +....-+. .+|.+. .|. .|.++.+...+ -++++|.|.+.+.
T Consensus 125 ~~~~~f~l~~~~~g~~Yliri~~~~~~e-~~~~~kV~aast~~~~~~~P~-LP~d~~Ik~f~~lrtC~SvTIAW~~s~d- 201 (300)
T PF10179_consen 125 EGLRHFRLSGVKPGERYLIRIQISNSDE-GPSTFKVQAASTNPSKQPYPQ-LPDDTSIKEFNKLRTCNSVTIAWLGSPD- 201 (300)
T ss_pred cceEEEEECCCCCCCeEEEEEEccCCCC-CceEEEEEEecCCcccCCCCC-CCCCCceeEEcCCcccceEEEEEecCCC-
Confidence 3446889999999999999998877532 22222233 333332 222 46777775544 3899999998742
Q ss_pred CCCccEEEEEEEEEEccCC----------------CC---c--cEEE--E-------ec-CcceEEecCCCCCceEEEEE
Q psy8771 744 RSNGHIVYYKLQFVETGRS----------------DS---E--ASIV--T-------LK-NQTSFVLDELKKWTEYRIWV 792 (904)
Q Consensus 744 ~~~g~~~~Y~v~~~~~~~~----------------~~---~--~~~~--~-------~~-~~~~~~i~~L~p~t~Y~~~V 792 (904)
. . ..|.|+.+..... .. . ..+. . .. .....+|.||+||+.|.|.|
T Consensus 202 -~--~-~kYCvy~~~~~~~~~~~~~~~~~n~C~~~~sr~k~e~v~Ck~~~~~n~~~~~~~~v~tetI~~L~PG~~Yl~dV 277 (300)
T PF10179_consen 202 -R--S-IKYCVYRREEHSNYQERSVSRMPNQCLGPESRKKSEKVLCKYFHSPNSSEDPQRAVTTETIKGLKPGTTYLFDV 277 (300)
T ss_pred -C--C-ceEEEEEEEecCchhhhhhcccCccCCCCCccccceEEEEEEEcCCccccccccccceeecccCCCCcEEEEEE
Confidence 1 1 4799988865432 00 0 0010 0 11 33456899999999999999
Q ss_pred EEeeCCCCCCCCCcEEeecC
Q psy8771 793 LAGTSIGDGPSSYPITIRTH 812 (904)
Q Consensus 793 ~a~~~~g~g~~s~~~~~~t~ 812 (904)
.+.-..|..-.=....++|.
T Consensus 278 ~~~~~~G~sl~Y~s~~VkTr 297 (300)
T PF10179_consen 278 YVNGPSGQSLPYRSKWVKTR 297 (300)
T ss_pred EEecCCCceeecceEEEEec
Confidence 99877776655555556664
No 107
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=98.68 E-value=6.2e-08 Score=76.67 Aligned_cols=64 Identities=25% Similarity=0.476 Sum_probs=49.1
Q ss_pred eEEEEEEcc-CCCCeEEEeeCCccccCCC----Cceee----cceEEEEeee--cCCeEEEEEEEecCcceEEEEE
Q psy8771 123 LNLSCVAVG-SPMPFVKWRKGQNIELTPD----DKLPV----GRNVLTLDRV--TESENYTCIAASVLGVIETSTI 187 (904)
Q Consensus 123 ~~l~C~~~g-~p~p~i~W~k~~~~~~~~~----~~~~~----~~~~l~i~~l--~d~g~Y~c~a~n~~g~~~~~~~ 187 (904)
+.|.|.+.+ .|.+.++|+|+ +..+... .++.. ..++|.|.++ +|+|.|+|.|.|..|..+.++.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~-g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKN-GKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CEEEEecccCCCCCceEEEEC-CcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 479999885 68899999998 6666432 22222 3468999998 6999999999999998777654
No 108
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.64 E-value=2.4e-07 Score=77.10 Aligned_cols=75 Identities=16% Similarity=0.336 Sum_probs=56.1
Q ss_pred eEEecCCCeEEEEEEccCCCCeEEEeeCCcccc-------CCCCceee-----cceEEEEeee--cCCeEEEEEEEecCc
Q psy8771 115 LEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIEL-------TPDDKLPV-----GRNVLTLDRV--TESENYTCIAASVLG 180 (904)
Q Consensus 115 ~~~~~g~~~~l~C~~~g~p~p~i~W~k~~~~~~-------~~~~~~~~-----~~~~l~i~~l--~d~g~Y~c~a~n~~g 180 (904)
+.+.+|++++|.|.+.+.+.+.+.|++.++..+ ....|+.+ ...+|.|.++ +|+|.|.|.+.+...
T Consensus 7 ~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~ 86 (95)
T cd05717 7 VTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTMPV 86 (95)
T ss_pred EEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecCCC
Confidence 889999999999999999999999987423211 12245543 3457999999 699999999987653
Q ss_pred ceEEEEEEEE
Q psy8771 181 VIETSTIVKV 190 (904)
Q Consensus 181 ~~~~~~~l~v 190 (904)
.++.+.|.|
T Consensus 87 -~~~~~~~~v 95 (95)
T cd05717 87 -QTAKATVTV 95 (95)
T ss_pred -ceEEEEEEC
Confidence 466666654
No 109
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=98.63 E-value=2.9e-07 Score=74.08 Aligned_cols=72 Identities=17% Similarity=0.296 Sum_probs=52.1
Q ss_pred CCCeEEEEEEccCCCCeEEEeeCCccc---cCCCCceee----cceEEEEeee--cCCeEEEEEEEecCc--ceEEEEEE
Q psy8771 120 DSPLNLSCVAVGSPMPFVKWRKGQNIE---LTPDDKLPV----GRNVLTLDRV--TESENYTCIAASVLG--VIETSTIV 188 (904)
Q Consensus 120 g~~~~l~C~~~g~p~p~i~W~k~~~~~---~~~~~~~~~----~~~~l~i~~l--~d~g~Y~c~a~n~~g--~~~~~~~l 188 (904)
|++++|.|.+.|.|.+.+.|.++++.. +....+... ....|.|.++ +|+|.|.|.|.|..+ ..+.+..|
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i 80 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI 80 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence 789999999999999999999873321 111111211 2457999998 799999999999876 45566666
Q ss_pred EEE
Q psy8771 189 KVQ 191 (904)
Q Consensus 189 ~v~ 191 (904)
.|.
T Consensus 81 ~V~ 83 (84)
T cd05861 81 TVH 83 (84)
T ss_pred EEe
Confidence 654
No 110
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.62 E-value=1.5e-07 Score=76.12 Aligned_cols=69 Identities=17% Similarity=0.248 Sum_probs=53.9
Q ss_pred CCceEEecCCCeEEEEEEc-cCCCCeEEEeeCCcccc--CCCCc-eee-cceEEEEeee--cCCeEEEEEEEecCcc
Q psy8771 112 PALLEVMLDSPLNLSCVAV-GSPMPFVKWRKGQNIEL--TPDDK-LPV-GRNVLTLDRV--TESENYTCIAASVLGV 181 (904)
Q Consensus 112 ~~~~~~~~g~~~~l~C~~~-g~p~p~i~W~k~~~~~~--~~~~~-~~~-~~~~l~i~~l--~d~g~Y~c~a~n~~g~ 181 (904)
.+...+.+|+.+.|.|... |.|.+.+.|+|+ +..+ ..+.| +.. .+|.|.|.++ +|.|.|+|.|.|....
T Consensus 10 ~~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~-~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~ 85 (96)
T cd05727 10 RDEVKVKEGWGVVLFCDPPPHYPDLSYRWLLN-EFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSST 85 (96)
T ss_pred cCceeeeeCCcEEEeeCCCCCCCCCEEEEEEC-CcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccC
Confidence 3448889999999999655 889999999999 5433 22333 333 4799999999 6999999999997754
No 111
>KOG4802|consensus
Probab=98.59 E-value=6.5e-07 Score=88.32 Aligned_cols=125 Identities=20% Similarity=0.319 Sum_probs=88.1
Q ss_pred cceEEEeCCCCCcEEEEEEEEEcCCCC---CCCCCCeeEEecCCCCCCCCCCcEEEecC---CCEEEEEecCCCCCCCCc
Q psy8771 674 VETYSLTGLYPNTLYYIWLAAQSPRGE---GATTPPIPVRTKQYVPGAPPQNVSCEPLS---STSIRISWEPPPVERSNG 747 (904)
Q Consensus 674 ~~~~~l~~L~p~t~Y~v~V~a~~~~G~---~~~s~~~~~~t~~~~p~~~P~~l~~~~~~---~~~v~l~W~~~~~~~~~g 747 (904)
.+.+.+.++.||.-|+|+|.|+|..|. +.+|......-.+.+|+ +|.+++...+. .-...|.|.+++ .+=
T Consensus 208 e~~~~~t~~rPgRwyefrvaavn~~G~rGFs~PSkpf~ssk~pkaPp-~P~dl~l~~v~~dG~~~~~v~w~P~~---sdl 283 (516)
T KOG4802|consen 208 ENTYIFTDMRPGRWYEFRVAAVNAYGFRGFSEPSKPFPSSKNPKAPP-SPNDLKLIGVQFDGRYMLKVVWCPSK---SDL 283 (516)
T ss_pred CceeeeeecCcceeEEEEEeeeecccccccCCCCCCCCCCCCCCCCc-CcccceeeeeeecceEEEEEEeCCCC---CCC
Confidence 348889999999999999999998765 45565555544444444 67888875443 234668888875 456
Q ss_pred cEEEEEEEEEEccCCCCcc--EEEEec-CcceEEecCCCCCceEEEEEEEeeCCCCCC
Q psy8771 748 HIVYYKLQFVETGRSDSEA--SIVTLK-NQTSFVLDELKKWTEYRIWVLAGTSIGDGP 802 (904)
Q Consensus 748 ~~~~Y~v~~~~~~~~~~~~--~~~~~~-~~~~~~i~~L~p~t~Y~~~V~a~~~~g~g~ 802 (904)
++..|.|.|.......... ...... +...+.|.+|.|+..|.|.|.|....|.+.
T Consensus 284 Pv~~Yki~Ws~~v~s~k~~m~tks~~~k~thq~si~~L~Pns~Y~VevqAi~y~g~~r 341 (516)
T KOG4802|consen 284 PVEKYKITWSLYVNSAKASMITKSSYVKDTHQFSIKELLPNSSYYVEVQAISYLGSRR 341 (516)
T ss_pred cceeeEEEeehhhhhhhhhcccccceeeccchhhhhhcCCCCeEEEEEEEEEeccCcc
Confidence 7999999998754221111 111111 445566999999999999999999888764
No 112
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.58 E-value=2.3e-07 Score=70.51 Aligned_cols=61 Identities=31% Similarity=0.641 Sum_probs=49.9
Q ss_pred cCCCeEEEEEEccCCCCeEEEeeCCccccCCCCceeecceEEEEeee--cCCeEEEEEEEecCc
Q psy8771 119 LDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRNVLTLDRV--TESENYTCIAASVLG 180 (904)
Q Consensus 119 ~g~~~~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~l~i~~l--~d~g~Y~c~a~n~~g 180 (904)
+|+.+.|.|.+.+.|.+.+.|+++ +..+....+.......|.|.++ +|+|.|+|.+.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~-~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKD-GKPLPESNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEEC-CEECCCCCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 478999999999999999999998 6555533334446778999999 699999999998765
No 113
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=98.56 E-value=7.1e-05 Score=73.84 Aligned_cols=258 Identities=19% Similarity=0.234 Sum_probs=128.0
Q ss_pred cCCCCceeeeeccCCeEEEEEEEEeeCC-CCCCCCCCceeeecCCCCCCCCCCe-----EEEecC-Cc-eEEEEecCCC-
Q psy8771 436 YGKTPGFGEQALYPNTLYYIWLAAQSPR-GEGATTPPIPVRTKQYEPGTAPRDV-----QVRPLS-SS-TMVIQWDEPE- 506 (904)
Q Consensus 436 ~~~~~~~~~~~L~p~~~Y~~~v~a~~~~-g~~~~s~~~~~~t~~~~p~~~p~~l-----~v~~~~-~~-~~~l~W~~p~- 506 (904)
.|..+.+++.+|.|++.|.|.|.+.|.. +.+..-......+.+... ..|..| ...... .. .-.++...|.
T Consensus 11 vg~~t~~t~~~L~p~t~YyfdVF~vn~~~n~ssay~gt~~~t~~~~r-~~~~~Lkdg~l~~~~l~~~~g~~~f~f~vP~~ 89 (300)
T PF10179_consen 11 VGQKTNQTLSGLKPDTTYYFDVFVVNQLTNNSSAYLGTFARTREENR-SKPTRLKDGKLTQVKLKGKGGFKFFSFKVPKR 89 (300)
T ss_pred cCCCceEEeccCCCCCeEEEEEEEEECCCCceeeeeEEEEEEccccC-CCcEEcccCcEEEEEECCcCceeEEEEcCCcC
Confidence 3566778999999999999999999974 443322223333421111 222222 111111 11 2344555441
Q ss_pred -CCCCceee--------EEEEEEeCCCCCCcceEEEeecCceEEEEcCCCCCCeEEEEEEEEeCCCCCCCCCcEE-EecC
Q psy8771 507 -TPNGQITG--------YKVYYTQDQSLPMSAWETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVGPGPLSAPVL-VKTQ 576 (904)
Q Consensus 507 -~~~~~i~~--------Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~~V~a~~~~g~~~~S~~~~-~~t~ 576 (904)
..+..+.. -+|+....+. .........+-..+.+.++.||..|.+++.+.+... +.....+. ..+.
T Consensus 90 ~~~~~~~~l~v~~C~G~V~v~i~r~gk---~l~~~~~v~~~~~f~l~~~~~g~~Yliri~~~~~~e-~~~~~kV~aast~ 165 (300)
T PF10179_consen 90 SSTHQSLWLFVQSCSGSVRVEISRNGK---ILLSQKNVEGLRHFRLSGVKPGERYLIRIQISNSDE-GPSTFKVQAASTN 165 (300)
T ss_pred CCCCccEEEEEEeCCCeEEEEEEECCe---EEeeeecccceEEEEECCCCCCCeEEEEEEccCCCC-CceEEEEEEecCC
Confidence 11111111 1222222220 011111234556789999999999999998877543 22222222 2222
Q ss_pred C---CCCCCCCCceEEec----CCCeEEEEEeCCCCCCCCceEEEEEeccCCCCCcceEEEeeccceEEEeccCCCCC-C
Q psy8771 577 Q---GVPSQPRDLRAVDI----QETAVTLAWSKPTHSGENIISYELYWNDTYAKPRDLRAVDIQETAVTLAWSKPTHS-G 648 (904)
Q Consensus 577 ~---~~p~~p~~~~~~~~----~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~p~~l~~~~~~~~~~~l~w~~~~~~-~ 648 (904)
. ..|.-|.++.+... +-++++|.|.+..+. . ..|.|+.++...-= ....+.-.++...+. .
T Consensus 166 ~~~~~~P~LP~d~~Ik~f~~lrtC~SvTIAW~~s~d~--~-~kYCvy~~~~~~~~--------~~~~~~~~~n~C~~~~s 234 (300)
T PF10179_consen 166 PSKQPYPQLPDDTSIKEFNKLRTCNSVTIAWLGSPDR--S-IKYCVYRREEHSNY--------QERSVSRMPNQCLGPES 234 (300)
T ss_pred cccCCCCCCCCCCceeEEcCCcccceEEEEEecCCCC--C-ceEEEEEEEecCch--------hhhhhcccCccCCCCCc
Confidence 2 24566788777554 347999999987542 2 57877765421100 000001111111100 0
Q ss_pred CceeeEEEE-EEeCCccccceEEecccceEEEeCCCCCcEEEEEEEEEcCCCCCCCCCCeeEEe
Q psy8771 649 ENIISYELY-WNDTYAKAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRT 711 (904)
Q Consensus 649 ~~~~~y~v~-~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~v~V~a~~~~G~~~~s~~~~~~t 711 (904)
.......+. |... .+............+|.||+||+.|.|.|.+.-..|.+-+=....+.|
T Consensus 235 r~k~e~v~Ck~~~~--~n~~~~~~~~v~tetI~~L~PG~~Yl~dV~~~~~~G~sl~Y~s~~VkT 296 (300)
T PF10179_consen 235 RKKSEKVLCKYFHS--PNSSEDPQRAVTTETIKGLKPGTTYLFDVYVNGPSGQSLPYRSKWVKT 296 (300)
T ss_pred cccceEEEEEEEcC--CccccccccccceeecccCCCCcEEEEEEEEecCCCceeecceEEEEe
Confidence 011111111 1111 000001112234668999999999999999998777654333444444
No 114
>KOG4802|consensus
Probab=98.56 E-value=1.9e-06 Score=85.09 Aligned_cols=178 Identities=20% Similarity=0.316 Sum_probs=110.1
Q ss_pred CCCCe-EEEecCCceEEEEecCCCCCCCceeeEE--EEEEe---CCCCCCcceEEEeecCce-EEEEcCCCCCCeEEEEE
Q psy8771 484 APRDV-QVRPLSSSTMVIQWDEPETPNGQITGYK--VYYTQ---DQSLPMSAWETQVVDNNQ-LTTISDLTPHTIYTIRV 556 (904)
Q Consensus 484 ~p~~l-~v~~~~~~~~~l~W~~p~~~~~~i~~Y~--v~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~L~p~t~Y~~~V 556 (904)
+|++. .......+++.+.|..-....-.-..+. ..|.- .++.....|+.+...... .+.+.++.||.-|+|+|
T Consensus 147 ~Pr~k~~y~r~~~g~~av~w~~~~~~~v~~~~~~vr~~w~~g~hase~~~thwQtv~~t~~e~~~~~t~~rPgRwyefrv 226 (516)
T KOG4802|consen 147 PPRPKILYFRRSRGSHAVDWKIESSLLVYYVHVEVRSHWGRGFHASELGPTHWQTVEKTMEENTYIFTDMRPGRWYEFRV 226 (516)
T ss_pred CCcchhhhhhhccCceeeeeeeccccceeeeehhhhhhhcccccccccccccceeeeecCCCceeeeeecCcceeEEEEE
Confidence 44433 3345566789999987332110011111 11111 122334668877775444 78899999999999999
Q ss_pred EEEeCCCCCC---CCCcEEEecCCCCCCCCCCceEEecCCC---eEEEEEeCCCCCCCCceEEEEEeccCCCCCcceEEE
Q psy8771 557 QAFTSVGPGP---LSAPVLVKTQQGVPSQPRDLRAVDIQET---AVTLAWSKPTHSGENIISYELYWNDTYAKPRDLRAV 630 (904)
Q Consensus 557 ~a~~~~g~~~---~S~~~~~~t~~~~p~~p~~~~~~~~~~~---~~~l~W~~~~~~~~~~~~y~v~~~~~~~~p~~l~~~ 630 (904)
.|+|..|.-. +|.+....-.+.+|++|.++++..+..+ ...|.|.++.
T Consensus 227 aavn~~G~rGFs~PSkpf~ssk~pkaPp~P~dl~l~~v~~dG~~~~~v~w~P~~-------------------------- 280 (516)
T KOG4802|consen 227 AAVNAYGFRGFSEPSKPFPSSKNPKAPPSPNDLKLIGVQFDGRYMLKVVWCPSK-------------------------- 280 (516)
T ss_pred eeeecccccccCCCCCCCCCCCCCCCCcCcccceeeeeeecceEEEEEEeCCCC--------------------------
Confidence 9999987543 4444444455566778888877665322 3566777664
Q ss_pred eeccceEEEeccCCCCCCCceeeEEEEEEeCCcccc-----ceEEecccceEEEeCCCCCcEEEEEEEEEcCCCCCCC
Q psy8771 631 DIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAK-----HHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGAT 703 (904)
Q Consensus 631 ~~~~~~~~l~w~~~~~~~~~~~~y~v~~~~~~~~~~-----~~~~~~~~~~~~l~~L~p~t~Y~v~V~a~~~~G~~~~ 703 (904)
.+-++..|.|.|.-.-.... ..........+.|.+|.|+..|.|.|.|....|.+..
T Consensus 281 ----------------sdlPv~~Yki~Ws~~v~s~k~~m~tks~~~k~thq~si~~L~Pns~Y~VevqAi~y~g~~rL 342 (516)
T KOG4802|consen 281 ----------------SDLPVEKYKITWSLYVNSAKASMITKSSYVKDTHQFSIKELLPNSSYYVEVQAISYLGSRRL 342 (516)
T ss_pred ----------------CCCcceeeEEEeehhhhhhhhhcccccceeeccchhhhhhcCCCCeEEEEEEEEEeccCccc
Confidence 45567788887765532111 0111111224449999999999999999999887653
No 115
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.55 E-value=2.6e-07 Score=75.15 Aligned_cols=69 Identities=17% Similarity=0.331 Sum_probs=51.6
Q ss_pred eEEecCCCeEEEEEEccCCCCeEEEeeCCccccC-------------CCCceee-------cceEEEEeee--cCCeEEE
Q psy8771 115 LEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELT-------------PDDKLPV-------GRNVLTLDRV--TESENYT 172 (904)
Q Consensus 115 ~~~~~g~~~~l~C~~~g~p~p~i~W~k~~~~~~~-------------~~~~~~~-------~~~~l~i~~l--~d~g~Y~ 172 (904)
+.+.+|+.++|.|.+.+.+.+.|.|++++..... ...|+.. ++.+|+|.+| +|+|.|.
T Consensus 2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~ 81 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI 81 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence 5678999999999999999999999966222111 1122221 2346999999 6999999
Q ss_pred EEEEecCcceE
Q psy8771 173 CIAASVLGVIE 183 (904)
Q Consensus 173 c~a~n~~g~~~ 183 (904)
|.+.|..++.+
T Consensus 82 C~v~~~~~~~~ 92 (94)
T cd07690 82 CEVEDKKEEVE 92 (94)
T ss_pred EEECCccceEE
Confidence 99999887654
No 116
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.48 E-value=5.2e-07 Score=72.29 Aligned_cols=63 Identities=17% Similarity=0.212 Sum_probs=50.5
Q ss_pred eEEecCCCeEEEEEEc-cCCCCeEEEeeCCccccCCCCceeecceEEEEeee--cCCeEEEEEEEecCcce
Q psy8771 115 LEVMLDSPLNLSCVAV-GSPMPFVKWRKGQNIELTPDDKLPVGRNVLTLDRV--TESENYTCIAASVLGVI 182 (904)
Q Consensus 115 ~~~~~g~~~~l~C~~~-g~p~p~i~W~k~~~~~~~~~~~~~~~~~~l~i~~l--~d~g~Y~c~a~n~~g~~ 182 (904)
..+.+|++++|.|.+. +.+.+.+.|+|+ +..+.. ......|.|.++ +|+|.|+|.+.+..|..
T Consensus 9 ~~V~~G~~vtL~C~~~~~~~~~~~~w~k~-g~~~~~----~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~ 74 (83)
T cd05753 9 RVVFEGEPLVLRCHGWKNKPVYKVTYYRD-GKAKKY----SHSNSNLSIPQATLSDSGSYHCSGIIGSYDY 74 (83)
T ss_pred ceecCCCCEEEEeeCCCCCcceEEEEEEC-CeEccc----cCCCceEEECccCHHHCEEEEEEEEeCCcee
Confidence 5788999999999986 466778999999 544432 224568999988 79999999999988853
No 117
>COG3401 Fibronectin type 3 domain-containing protein [General function prediction only]
Probab=98.46 E-value=1.8e-05 Score=77.20 Aligned_cols=313 Identities=15% Similarity=0.069 Sum_probs=179.3
Q ss_pred ceeeEEEEEEeCCCCCCcceEEEeecCceEEEEcCCCCCCeEEEEEEEEeCCCCCCCCCcEEEecCCCCCCCCCCceEEe
Q psy8771 511 QITGYKVYYTQDQSLPMSAWETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPSQPRDLRAVD 590 (904)
Q Consensus 511 ~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~~V~a~~~~g~~~~S~~~~~~t~~~~p~~p~~~~~~~ 590 (904)
.+.+|.+.....+.. ............+++...+|.++..|.+..-..+..-.+..|+...+.+..- .+.......-
T Consensus 4 ~~~~~~~~~t~~~~~-~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~i--~~~~~~~~~~ 80 (343)
T COG3401 4 DIDGFVLYRTKKDLK-LKRIGTIKNKYQTHYYDEGLEGEESYPYQEGTTKVDKISYDSERILVKTSFI--ERVRSVFASL 80 (343)
T ss_pred cceeEEEEEEcccch-hhhhhccccchhhhhhhccccccCcceeeecccccceeeecCcceEEEeeec--cccccccchh
Confidence 457777776665532 2222222224567788999999999998887766654444556655555411 1112222222
Q ss_pred cCCCeEEEEEeCCCCCCCCceEEEEEeccCCCCCcceEEEeeccceEEEeccCCCCCCCceeeEEEEEEeCCccccceE-
Q psy8771 591 IQETAVTLAWSKPTHSGENIISYELYWNDTYAKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHR- 669 (904)
Q Consensus 591 ~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~p~~l~~~~~~~~~~~l~w~~~~~~~~~~~~y~v~~~~~~~~~~~~~- 669 (904)
.-+..+.+.|.+.. +-....|.|+....+..-...-
T Consensus 81 ~~~~~~~~~w~~~~-------------------------------------------d~~~~~Y~i~~~~gD~~f~r~~~ 117 (343)
T COG3401 81 ERPKSVKVFWSPHP-------------------------------------------DVSVGKYIIQRQNGDGKFLRTGL 117 (343)
T ss_pred cCcceeeecccccC-------------------------------------------CCCCCeEEEEEecCchhhhhhhH
Confidence 23455888898863 3457789998877665521111
Q ss_pred -EecccceEEEeCCCCCcEEEEEEEEEcCCCCCCCCCCeeEEecCCCCCCCC---CCcEEEecCCCEEEEEecCCCCCCC
Q psy8771 670 -RIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPP---QNVSCEPLSSTSIRISWEPPPVERS 745 (904)
Q Consensus 670 -~~~~~~~~~l~~L~p~t~Y~v~V~a~~~~G~~~~s~~~~~~t~~~~p~~~P---~~l~~~~~~~~~v~l~W~~~~~~~~ 745 (904)
...-...+.-.+|.++..|...|.|.+..+.-..+ +.-.+..|...| .++++.....+.+.|+|+.++.
T Consensus 118 ~~n~l~~~~i~s~~~~~~~~~~~Iia~~f~~~~sfs----f~gVE~~~~~~P~ei~~~~~~~d~~~~i~ls~dg~~~--- 190 (343)
T COG3401 118 VKNRLFVEFIDSDLGHNEKYMELIIAADFQMGKSFS----FTGVEATPKAEPKEITNVRVSFDLGNNIELSEDGSEA--- 190 (343)
T ss_pred HHhccchhheecccccccceeeeEEeecccccceee----eeeeecccccCCceeeeeeeecCCCCcceeeccCccc---
Confidence 11112344556899999999999999876543222 222222233333 3444556678899999999854
Q ss_pred CccEEEEEEEEEEccCCCCccEEEEec-CcceEEecCCCCCceEEEEEEEeeCCC-CCCCCCcEE-eecCCCCCCC----
Q psy8771 746 NGHIVYYKLQFVETGRSDSEASIVTLK-NQTSFVLDELKKWTEYRIWVLAGTSIG-DGPSSYPIT-IRTHEDDPSE---- 818 (904)
Q Consensus 746 ~g~~~~Y~v~~~~~~~~~~~~~~~~~~-~~~~~~i~~L~p~t~Y~~~V~a~~~~g-~g~~s~~~~-~~t~~~~P~~---- 818 (904)
..+|.|+-.+.+.... ....... +.......+| |..|...|.+.+..| ++..+.... -.|...++.+
T Consensus 191 ---~~yy~IY~~~~g~e~~-~~ia~t~~n~y~d~~egl--ga~~~y~VTtVd~~~~es~lp~~~t~~~~~g~~e~pt~~g 264 (343)
T COG3401 191 ---EDYYRIYASDSGNEEY-GFIAQTTENSYYDVKEGL--GAVEYYKVTTVDNTGFESDLPNEPTVGETGGRYEVPTIPG 264 (343)
T ss_pred ---cceEEEeccCCccccc-cceeeccccchhhhhhcc--CceeEEEEEEEcCCcceeccCCccccccccCCcccccCCC
Confidence 3388887766553322 1111111 3333344555 678888888887544 555555333 3444444433
Q ss_pred ----CccCCcceeeCCCCCceeeeeeeecCCceEEecCCCeeEEEEcCCCCCcEEEEEEEEEecCCCC
Q psy8771 819 ----VCPTQNDFRKNKKTNGSNFKGGYLNDPMRFDVSDGGALELNVTGLQPDTIYTIQVAALTRKGDG 882 (904)
Q Consensus 819 ----v~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~a~n~~G~g 882 (904)
...+.+.|+......+.........+.............+.+..+..+-.|.+.|.+.+..|.+
T Consensus 265 ~t~~~s~i~V~~E~~~~~~av~ytvyr~~~g~~~~~f~it~~d~~d~~~ltg~~~~y~v~~v~~~gls 332 (343)
T COG3401 265 ETTEASFIGVAAEQNQLRQAVTYTVYRVEDGTPTKFFTITETDGQDNDMLTGVEYRYEVVAVDKAGLS 332 (343)
T ss_pred ceeeeeeeeEEecccccceeeEEeeeeccCCCcceeeeeeeccccchhhccccceeEEEEEecccccc
Confidence 2222347764433333322222222222222344566778888999999999999999988864
No 118
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=98.40 E-value=4.1e-06 Score=69.47 Aligned_cols=85 Identities=31% Similarity=0.595 Sum_probs=67.0
Q ss_pred CCCCCeEEEecCCceEEEEecCCCCCCCceeeEEEEEEeCCCCCCcceEEEeec--CceEEEEcCCCCCCeEEEEEEEEe
Q psy8771 483 TAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVD--NNQLTTISDLTPHTIYTIRVQAFT 560 (904)
Q Consensus 483 ~~p~~l~v~~~~~~~~~l~W~~p~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~L~p~t~Y~~~V~a~~ 560 (904)
.+|.++.+.....+++.|+|.++....+.+..|.|.+.... ...|...... ....+.+.+|.|++.|.|+|++.+
T Consensus 2 ~~p~~~~~~~~~~~~~~v~W~~~~~~~~~~~~y~v~~~~~~---~~~~~~~~~~~~~~~~~~i~~l~p~~~Y~~~v~a~~ 78 (93)
T cd00063 2 SPPTNLRVTDVTSTSVTLSWTPPEDDGGPITGYVVEYREKG---SGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVN 78 (93)
T ss_pred cCCCCcEEEEecCCEEEEEECCCCCCCCcceeEEEEEeeCC---CCCCEEeeccCCcccEEEEccccCCCEEEEEEEEEC
Confidence 35667888877889999999997655467789999998865 2345555443 677899999999999999999999
Q ss_pred CCCCCCCCCc
Q psy8771 561 SVGPGPLSAP 570 (904)
Q Consensus 561 ~~g~~~~S~~ 570 (904)
..|.|.++..
T Consensus 79 ~~~~~~~s~~ 88 (93)
T cd00063 79 GGGESPPSES 88 (93)
T ss_pred CCccCCCccc
Confidence 8887766653
No 119
>smart00409 IG Immunoglobulin.
Probab=98.38 E-value=5.3e-06 Score=67.65 Aligned_cols=76 Identities=32% Similarity=0.522 Sum_probs=59.9
Q ss_pred eEEecCCCeEEEEEEccCCCCeEEEeeCCccccCCCCceee--c--ceEEEEeee--cCCeEEEEEEEecCcceEEEEEE
Q psy8771 115 LEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPV--G--RNVLTLDRV--TESENYTCIAASVLGVIETSTIV 188 (904)
Q Consensus 115 ~~~~~g~~~~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~--~--~~~l~i~~l--~d~g~Y~c~a~n~~g~~~~~~~l 188 (904)
+.+..|+++.|.|.+.+.+.+.+.|+++++..+....++.. . ...|.|.++ +|+|.|.|.+.+..+.......|
T Consensus 4 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l 83 (86)
T smart00409 4 VTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTL 83 (86)
T ss_pred EEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEE
Confidence 77889999999999999988999999973444543444443 2 368999999 69999999999888877666666
Q ss_pred EE
Q psy8771 189 KV 190 (904)
Q Consensus 189 ~v 190 (904)
.|
T Consensus 84 ~V 85 (86)
T smart00409 84 TV 85 (86)
T ss_pred EE
Confidence 54
No 120
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.38 E-value=5.3e-06 Score=67.65 Aligned_cols=76 Identities=32% Similarity=0.522 Sum_probs=59.9
Q ss_pred eEEecCCCeEEEEEEccCCCCeEEEeeCCccccCCCCceee--c--ceEEEEeee--cCCeEEEEEEEecCcceEEEEEE
Q psy8771 115 LEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPV--G--RNVLTLDRV--TESENYTCIAASVLGVIETSTIV 188 (904)
Q Consensus 115 ~~~~~g~~~~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~--~--~~~l~i~~l--~d~g~Y~c~a~n~~g~~~~~~~l 188 (904)
+.+..|+++.|.|.+.+.+.+.+.|+++++..+....++.. . ...|.|.++ +|+|.|.|.+.+..+.......|
T Consensus 4 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l 83 (86)
T smart00410 4 VTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTL 83 (86)
T ss_pred EEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEE
Confidence 77889999999999999988999999973444543444443 2 368999999 69999999999888877666666
Q ss_pred EE
Q psy8771 189 KV 190 (904)
Q Consensus 189 ~v 190 (904)
.|
T Consensus 84 ~V 85 (86)
T smart00410 84 TV 85 (86)
T ss_pred EE
Confidence 54
No 121
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=98.37 E-value=4.4e-06 Score=69.26 Aligned_cols=87 Identities=28% Similarity=0.497 Sum_probs=67.9
Q ss_pred CCCcceEEEeeccceEEEeccCCCCCCCceeeEEEEEEeCCccccceEEec--ccceEEEeCCCCCcEEEEEEEEEcCCC
Q psy8771 622 AKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIG--LVETYSLTGLYPNTLYYIWLAAQSPRG 699 (904)
Q Consensus 622 ~~p~~l~~~~~~~~~~~l~w~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~--~~~~~~l~~L~p~t~Y~v~V~a~~~~G 699 (904)
.+|.++++......++.|+|..+....+.+..|.|.+.......+...... ....+.+.+|.|++.|.|+|+|.+..|
T Consensus 2 ~~p~~~~~~~~~~~~~~v~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~p~~~Y~~~v~a~~~~~ 81 (93)
T cd00063 2 SPPTNLRVTDVTSTSVTLSWTPPEDDGGPITGYVVEYREKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNGGG 81 (93)
T ss_pred cCCCCcEEEEecCCEEEEEECCCCCCCCcceeEEEEEeeCCCCCCEEeeccCCcccEEEEccccCCCEEEEEEEEECCCc
Confidence 467778888888999999999986655678899999998763333333332 567899999999999999999999888
Q ss_pred CCCCCCCee
Q psy8771 700 EGATTPPIP 708 (904)
Q Consensus 700 ~~~~s~~~~ 708 (904)
.|.++....
T Consensus 82 ~~~~s~~~~ 90 (93)
T cd00063 82 ESPPSESVT 90 (93)
T ss_pred cCCCccccc
Confidence 877665343
No 122
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.36 E-value=2.2e-06 Score=69.17 Aligned_cols=72 Identities=26% Similarity=0.340 Sum_probs=53.3
Q ss_pred CCCeEEEEEEccCCCC--eEEEeeCCcccc--C--CCCcee-----ecceEEEEeee--cCCeEEEEEEEecCcceEEEE
Q psy8771 120 DSPLNLSCVAVGSPMP--FVKWRKGQNIEL--T--PDDKLP-----VGRNVLTLDRV--TESENYTCIAASVLGVIETST 186 (904)
Q Consensus 120 g~~~~l~C~~~g~p~p--~i~W~k~~~~~~--~--~~~~~~-----~~~~~l~i~~l--~d~g~Y~c~a~n~~g~~~~~~ 186 (904)
|+++.|.|.+.|++.+ .+.|..++.... . ...+.. .....|.|.++ +|+|.|+|.|.|..|...+++
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t 80 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST 80 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence 7899999999987754 679988733221 1 110111 12457999998 699999999999999888888
Q ss_pred EEEEE
Q psy8771 187 IVKVQ 191 (904)
Q Consensus 187 ~l~v~ 191 (904)
.|.|.
T Consensus 81 ~~~V~ 85 (86)
T cd05862 81 IVIVH 85 (86)
T ss_pred EEEEe
Confidence 88876
No 123
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.29 E-value=4.7e-06 Score=67.65 Aligned_cols=75 Identities=16% Similarity=0.267 Sum_probs=56.5
Q ss_pred eEEecCCCeEEEEEEc-----------cCCCCeEEEeeCCccccCC-------CCceeecceEEEEeee--cCCeEEEEE
Q psy8771 115 LEVMLDSPLNLSCVAV-----------GSPMPFVKWRKGQNIELTP-------DDKLPVGRNVLTLDRV--TESENYTCI 174 (904)
Q Consensus 115 ~~~~~g~~~~l~C~~~-----------g~p~p~i~W~k~~~~~~~~-------~~~~~~~~~~l~i~~l--~d~g~Y~c~ 174 (904)
+.+.+|+++.|.|... .+....|.|+|+ +..+.. ..|+...+..|.|..+ +|+|.|+|+
T Consensus 10 ~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~-~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~ 88 (104)
T cd05896 10 YMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKS-SGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCV 88 (104)
T ss_pred EEEcCCCeEEEECCCccccccccccccccCCceEEEEEC-CCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEE
Confidence 8889999999999862 222347999999 322222 1377778999999998 799999999
Q ss_pred EEecCcceEEEEEEEE
Q psy8771 175 AASVLGVIETSTIVKV 190 (904)
Q Consensus 175 a~n~~g~~~~~~~l~v 190 (904)
+.|.......+..|.|
T Consensus 89 ~rN~t~C~~~~i~l~V 104 (104)
T cd05896 89 LRNSTYCMKVSMSLTV 104 (104)
T ss_pred ECCCCcceEEEEEEEC
Confidence 9998876666655543
No 124
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.28 E-value=3.5e-06 Score=67.71 Aligned_cols=75 Identities=33% Similarity=0.531 Sum_probs=53.3
Q ss_pred CeEEcCCCCceEEecCCCeEEEEEEccCCCCeEEEeeCCccccCCCCceeecceEEEEeee--cCCeEEEEEEEecCcc-
Q psy8771 105 PQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRNVLTLDRV--TESENYTCIAASVLGV- 181 (904)
Q Consensus 105 P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~l~i~~l--~d~g~Y~c~a~n~~g~- 181 (904)
|.|...+ ..+.+|++++|.|.+.|.|.+.+.|+++ +..+.. ..+.+.|.++ +++|.|+|.+.+..+.
T Consensus 2 P~l~~~~---~~v~~g~~~~l~C~~~~~p~~~~~w~~~-~~~~~~------~~~~~~~~~~~~~~~g~y~C~~~~~~~~~ 71 (80)
T PF13895_consen 2 PVLSSSP---QSVEEGDSVTLTCSVSGNPPPQVQWYKN-GSPINS------SQNGLFIPNVSPEDSGNYTCRASNGSGSN 71 (80)
T ss_dssp -EEEEES---SEEETTSEEEEEEEEESSSSSEEEEEET-TEEEEE------ESSEEEESSEEGGGTEEEEEEEEETTEEE
T ss_pred cEEEccc---eEEeCCCcEEEEEEEEcccceeeeeeee-eeeeee------eeeeeeeeeeccccCEEEEEEEEeCCCCe
Confidence 4454433 5578999999999999999999999998 544431 2222666666 7999999999996653
Q ss_pred eEEEEEEE
Q psy8771 182 IETSTIVK 189 (904)
Q Consensus 182 ~~~~~~l~ 189 (904)
.+....|.
T Consensus 72 ~s~~~~v~ 79 (80)
T PF13895_consen 72 TSTSVNVT 79 (80)
T ss_dssp EEEEEEEE
T ss_pred EeeeEEee
Confidence 33444443
No 125
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.28 E-value=1.9e-05 Score=64.04 Aligned_cols=77 Identities=23% Similarity=0.189 Sum_probs=61.0
Q ss_pred ceEEecCCCeEEEEEEccCCCCe-EEEeeCCccccCCCC--ceee-------cceEEEEeee--cCCeEEEEEEEecCcc
Q psy8771 114 LLEVMLDSPLNLSCVAVGSPMPF-VKWRKGQNIELTPDD--KLPV-------GRNVLTLDRV--TESENYTCIAASVLGV 181 (904)
Q Consensus 114 ~~~~~~g~~~~l~C~~~g~p~p~-i~W~k~~~~~~~~~~--~~~~-------~~~~l~i~~l--~d~g~Y~c~a~n~~g~ 181 (904)
.+.|.+|+++.|.|.+...|+|+ +.|.++ +..+.... .+.. -...|.|..| +++|.|+|.|.|..+.
T Consensus 12 ~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~-~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~ 90 (101)
T cd05860 12 TIFVNAGENLDLIVEYEAYPKPEHQQWIYM-NRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDAS 90 (101)
T ss_pred eEEEECCCCEEEEEEEEeCCCCeeeEEEcC-CcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCe
Confidence 38899999999999999999998 999998 54342221 1221 1247899998 6999999999999998
Q ss_pred eEEEEEEEEE
Q psy8771 182 IETSTIVKVQ 191 (904)
Q Consensus 182 ~~~~~~l~v~ 191 (904)
.+.+..|.|.
T Consensus 91 ~s~tF~l~v~ 100 (101)
T cd05860 91 ASVTFNVYVN 100 (101)
T ss_pred EEEEEEEEEe
Confidence 8888887765
No 126
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.20 E-value=1.1e-05 Score=63.86 Aligned_cols=70 Identities=17% Similarity=0.214 Sum_probs=56.0
Q ss_pred eEEecCCCeEEEEEEccCCCCeEEEeeCCccccCCCCceeecceEEEEeee--cCCeEEEEEEEecCcceEEEEE
Q psy8771 115 LEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRNVLTLDRV--TESENYTCIAASVLGVIETSTI 187 (904)
Q Consensus 115 ~~~~~g~~~~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~l~i~~l--~d~g~Y~c~a~n~~g~~~~~~~ 187 (904)
+++..|+++.|+|...+. .+.+.|+++ +..+..+.++......|.|.++ +|+|.|.|.+. ..|-....+.
T Consensus 6 ~tv~~g~~v~L~C~~~s~-~A~v~W~~n-g~~l~~~~r~~~~~~GLlI~~~~~~dsG~Y~C~s~-E~gf~~~~~~ 77 (85)
T cd05872 6 RTVAPGADVVLPCQLRSN-LASPVWLFN-GTPLNAQFSYRVGTDGLLILVTSPEHSGTYRCYSE-EEGFQQLVAS 77 (85)
T ss_pred EEEecCCCEEEECCCCCC-CccEEEEEC-CcccCCCcceEEeCCCCEEEECCHhhCEEEEEEEe-cCCCeEEEEE
Confidence 889999999999999987 558999999 7777777788877777888888 69999999876 4454443333
No 127
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.20 E-value=1e-05 Score=65.70 Aligned_cols=69 Identities=20% Similarity=0.259 Sum_probs=52.7
Q ss_pred eEEecCCCeEEEEEE-c----cCCCCeEEEeeCCccccCCC-Cceee--cceEEEEeee--cCCeEEEEEEEecCcceEE
Q psy8771 115 LEVMLDSPLNLSCVA-V----GSPMPFVKWRKGQNIELTPD-DKLPV--GRNVLTLDRV--TESENYTCIAASVLGVIET 184 (904)
Q Consensus 115 ~~~~~g~~~~l~C~~-~----g~p~p~i~W~k~~~~~~~~~-~~~~~--~~~~l~i~~l--~d~g~Y~c~a~n~~g~~~~ 184 (904)
+.+..|.+..|.|.- . ..+.++|+|+|| +.++... .++.. +...|.|.++ +|+|.|+|.|.+..|....
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd-~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~y 83 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKD-SVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGKKY 83 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCCcEEEccC-CEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCCEEE
Confidence 567789999999973 2 346679999999 7766543 34443 4568999999 6999999999998876543
No 128
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.18 E-value=1.5e-05 Score=62.16 Aligned_cols=58 Identities=17% Similarity=0.290 Sum_probs=42.4
Q ss_pred eEEEEEEc-cCCCCeEEEeeCCccccCCCCcee------ecceEEEEeee--cCCeEEEEEEEecCcc
Q psy8771 123 LNLSCVAV-GSPMPFVKWRKGQNIELTPDDKLP------VGRNVLTLDRV--TESENYTCIAASVLGV 181 (904)
Q Consensus 123 ~~l~C~~~-g~p~p~i~W~k~~~~~~~~~~~~~------~~~~~l~i~~l--~d~g~Y~c~a~n~~g~ 181 (904)
++|.|... |.|.++|+|+|+ +.++....... ...+.|.|.-. +|++.|.|.|.|..+.
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~-~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~ 68 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRD-RKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALV 68 (80)
T ss_pred EEEEEeCCCccCCCeEEEEEC-CEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhC
Confidence 68999988 578999999999 77775432111 12335666555 6899999999998875
No 129
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.11 E-value=3.8e-05 Score=62.53 Aligned_cols=63 Identities=13% Similarity=0.246 Sum_probs=49.3
Q ss_pred eEEecCCCeEEEEEEccCCCCeEEEeeCCcccc-------CCCCceee-----cceEEEEeee--cCCeEEEEEEEe
Q psy8771 115 LEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIEL-------TPDDKLPV-----GRNVLTLDRV--TESENYTCIAAS 177 (904)
Q Consensus 115 ~~~~~g~~~~l~C~~~g~p~p~i~W~k~~~~~~-------~~~~~~~~-----~~~~l~i~~l--~d~g~Y~c~a~n 177 (904)
+++.+|++++|.|.+.+.....+.|++.+...+ ..+.|+.. +.-+|.|.++ +|+|.|.|.+..
T Consensus 7 vtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t 83 (95)
T cd05881 7 VTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYT 83 (95)
T ss_pred eEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence 899999999999999999888889998732221 34456653 2346999999 699999999874
No 130
>KOG3632|consensus
Probab=98.11 E-value=1.9e-05 Score=86.82 Aligned_cols=262 Identities=19% Similarity=0.270 Sum_probs=169.7
Q ss_pred CCCCeEEEecCCceEEEEecCCCCCC--CceeeEEEEEEeCCCCCCcceEEEeecCceEEEEcCCC-CCCeEEEEEEEEe
Q psy8771 484 APRDVQVRPLSSSTMVIQWDEPETPN--GQITGYKVYYTQDQSLPMSAWETQVVDNNQLTTISDLT-PHTIYTIRVQAFT 560 (904)
Q Consensus 484 ~p~~l~v~~~~~~~~~l~W~~p~~~~--~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-p~t~Y~~~V~a~~ 560 (904)
-|+.+.+......++.|-|++|..+. +....|.+.....- ......++.+...+..|. .+..|.+.|.+..
T Consensus 580 ypr~~~~vkqla~sv~vawepps~pP~~~~~~~~~~~v~~el------rq~l~~gs~tka~~E~ld~~a~s~~isvq~lt 653 (1335)
T KOG3632|consen 580 YPRTGAAVKQLAGSVHVAWEPPSSPPFTAPARMIGATVLMEL------RQTLYAGSLTKAMQESLDNSAHSGYISVQRLT 653 (1335)
T ss_pred cccchhhhhhhccceeeeccCCCCCCccccceeeeeecchhh------hhhcccccchHHHHhhccccCCceeeehhhhh
Confidence 45666666777889999999975433 24555555443221 112233444444455544 4557889999999
Q ss_pred CCCCCCCCCcEEEecCCCCCCCCCCceEEecCCCeEEEEEeCCCCCCCCceEEEEEeccCCCCCcceEEEeeccceEEEe
Q psy8771 561 SVGPGPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKPRDLRAVDIQETAVTLA 640 (904)
Q Consensus 561 ~~g~~~~S~~~~~~t~~~~p~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~p~~l~~~~~~~~~~~l~ 640 (904)
..|....... ...+....+..|.++++..++..+..++|-+-..
T Consensus 654 SrGsqd~lrc-~Llvgg~a~vvpsqlrv~n~tqtSa~itwvp~ns----------------------------------- 697 (1335)
T KOG3632|consen 654 SRGSQDQLRC-ILLVGGAAPVVPSQLRVWNATQTSAMITWVPFNS----------------------------------- 697 (1335)
T ss_pred ccCCCCccee-eEeccccccccchhhhhhhhhchhhheeeeecCC-----------------------------------
Confidence 8887654432 3344555678899999999999999999987642
Q ss_pred ccCCCCCCCceeeEEEEEEeCCccccceEEecccceEEEeCCCCCcEEEEEEEEEcC-CC--------CCCCCCCeeEEe
Q psy8771 641 WSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSP-RG--------EGATTPPIPVRT 711 (904)
Q Consensus 641 w~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~v~V~a~~~-~G--------~~~~s~~~~~~t 711 (904)
.. -.+.|...+ ...........+++.+|.|++.|.++|-|.-. .+ .+.....+.|+|
T Consensus 698 ---------n~--~Hviyln~e---E~~ps~a~~y~ytf~~lrpgt~y~a~vea~~p~q~pwdl~~v~~etr~atv~f~t 763 (1335)
T KOG3632|consen 698 ---------NF--LHVIYLNAE---EPRPSVAEMYNYTFMRLRPGTDYWASVEAALPRQEPWDLRMVPMETRQATVLFRT 763 (1335)
T ss_pred ---------Cc--ceeeecCCc---cCCCchhhhhHHHHhccCCCCccceecccccCcCCCcccccchhhhhccceeeec
Confidence 11 123333222 11223344567889999999999999998765 11 123356788999
Q ss_pred cCCCCCCCCCCcEEE-ecCCCEEEEEecCCCCCCC---Cc-cEEEEEEEEEEccCCCCccEEEEec--CcceEEecCCCC
Q psy8771 712 KQYVPGAPPQNVSCE-PLSSTSIRISWEPPPVERS---NG-HIVYYKLQFVETGRSDSEASIVTLK--NQTSFVLDELKK 784 (904)
Q Consensus 712 ~~~~p~~~P~~l~~~-~~~~~~v~l~W~~~~~~~~---~g-~~~~Y~v~~~~~~~~~~~~~~~~~~--~~~~~~i~~L~p 784 (904)
...-|..||.++++. ..+...+.++|.++..+.. || .+++|.|+..... ...+... ..+.+.+..|+-
T Consensus 764 LpAGppappldV~vE~g~spg~l~vswrPptldsag~sngv~vtgYavyadgqk-----v~Evafptagst~VelsQlq~ 838 (1335)
T KOG3632|consen 764 LPAGPPAPPLDVKVETGGSPGRLEVSWRPPTLDSAGCSNGVAVTGYAVYADGQK-----VEEVAFPTAGSTKVELSQLQD 838 (1335)
T ss_pred ccCCCCCCchheeeecCCCCceeeeeccCceeccccccCceeeeeeeeeeCCce-----eeeeecccCCceEEEeeeehh
Confidence 999999999999885 4567899999999976442 23 6899999886321 1111122 555566666766
Q ss_pred C-ceEEEEEEEeeCCCCCCCCCc
Q psy8771 785 W-TEYRIWVLAGTSIGDGPSSYP 806 (904)
Q Consensus 785 ~-t~Y~~~V~a~~~~g~g~~s~~ 806 (904)
+ ..=.|.|+.....|++..|.+
T Consensus 839 ~l~~~~V~vRtms~~gesvdsip 861 (1335)
T KOG3632|consen 839 GLYHGAVGVRTMSVPGESVDSIP 861 (1335)
T ss_pred hheecceeEEecccCcccccccc
Confidence 3 233677887777787655543
No 131
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.11 E-value=4.6e-06 Score=63.39 Aligned_cols=55 Identities=29% Similarity=0.541 Sum_probs=40.8
Q ss_pred CCCeEEEEEE-ccCCCCeEEEeeCCccccCCCCceee--cce----EEEEeee--cCCeEEEEEE
Q psy8771 120 DSPLNLSCVA-VGSPMPFVKWRKGQNIELTPDDKLPV--GRN----VLTLDRV--TESENYTCIA 175 (904)
Q Consensus 120 g~~~~l~C~~-~g~p~p~i~W~k~~~~~~~~~~~~~~--~~~----~l~i~~l--~d~g~Y~c~a 175 (904)
|+.++|.|.+ .+.+...+.|.++ +..+........ ... .|.|.++ +|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKN-GQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEET-TTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEEC-CccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7889999999 7888899999999 444433322221 111 2999999 6999999986
No 132
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.04 E-value=3.3e-06 Score=66.80 Aligned_cols=72 Identities=31% Similarity=0.584 Sum_probs=49.1
Q ss_pred CCeEEcCCCCceEEecCCCeEEEEEEccCC-CCeEEEeeCCccccCCCCceeecceEEEEeee--cCCeEEEEEEEe
Q psy8771 104 PPQFSIPPPALLEVMLDSPLNLSCVAVGSP-MPFVKWRKGQNIELTPDDKLPVGRNVLTLDRV--TESENYTCIAAS 177 (904)
Q Consensus 104 ~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p-~p~i~W~k~~~~~~~~~~~~~~~~~~l~i~~l--~d~g~Y~c~a~n 177 (904)
+|.|...+.. .....+. ++|.|.+.+.| .+.++|+...................|.|.++ +|.|.|+|.|.|
T Consensus 1 kP~I~~~~~~-~~~~~~~-~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 1 KPQISVPPPP-VVTSGGS-VTLTCSAEGGPPPPSISWYDSNPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp ESEEEEESTS-EEETTEE-EEEEEEESSEESSEEEEEETEEEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred CCEEEEcCCC-cEeecee-EEEEEEEccccCCeEEEEEecCCceeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 4667766665 5544445 99999999998 78999992101111111122235678999988 699999999987
No 133
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.04 E-value=3.1e-05 Score=64.62 Aligned_cols=75 Identities=13% Similarity=0.175 Sum_probs=51.4
Q ss_pred eEEecCCCeEEEEEEccCCCCeEEEeeCCccc----c--------------CCCCceee-cceEEEEeee--cCCeEEEE
Q psy8771 115 LEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIE----L--------------TPDDKLPV-GRNVLTLDRV--TESENYTC 173 (904)
Q Consensus 115 ~~~~~g~~~~l~C~~~g~p~p~i~W~k~~~~~----~--------------~~~~~~~~-~~~~l~i~~l--~d~g~Y~c 173 (904)
..+.+|+++.|.|...-.+...++|+|+.... + ....|..+ .+++|.|.++ +|+|.|+|
T Consensus 8 ~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G~Y~~ 87 (105)
T cd05774 8 PQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTGFYTL 87 (105)
T ss_pred CcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCEEEEE
Confidence 55679999999986654444489999973211 0 01234333 5789999999 69999999
Q ss_pred EEEecCc-ceEEEEEEE
Q psy8771 174 IAASVLG-VIETSTIVK 189 (904)
Q Consensus 174 ~a~n~~g-~~~~~~~l~ 189 (904)
.+.+... ..++...|.
T Consensus 88 ~v~~~~~~~~~~~v~l~ 104 (105)
T cd05774 88 QTITTNFQVEQATVHLQ 104 (105)
T ss_pred EEEeCCccEEEEEEEEE
Confidence 9998774 344554443
No 134
>COG3401 Fibronectin type 3 domain-containing protein [General function prediction only]
Probab=97.99 E-value=0.00083 Score=65.99 Aligned_cols=298 Identities=15% Similarity=0.087 Sum_probs=169.5
Q ss_pred CCceeeeeccCCeEEEEEEEEeeCCCCCCCCCCceeeecCCCCCCCCCCeEEEecCCceEEEEecCCCCCCCceeeEEEE
Q psy8771 439 TPGFGEQALYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVY 518 (904)
Q Consensus 439 ~~~~~~~~L~p~~~Y~~~v~a~~~~g~~~~s~~~~~~t~~~~p~~~p~~l~v~~~~~~~~~l~W~~p~~~~~~i~~Y~v~ 518 (904)
..++...+|.++..|.|.--..+....+..++...+.+..- .+.+.+...-.-+..+.+-|.+..+ -.+..|.|+
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~i---~~~~~~~~~~~~~~~~~~~w~~~~d--~~~~~Y~i~ 104 (343)
T COG3401 30 QTHYYDEGLEGEESYPYQEGTTKVDKISYDSERILVKTSFI---ERVRSVFASLERPKSVKVFWSPHPD--VSVGKYIIQ 104 (343)
T ss_pred hhhhhhccccccCcceeeecccccceeeecCcceEEEeeec---cccccccchhcCcceeeecccccCC--CCCCeEEEE
Confidence 45567888999999988877666554444555555554311 1111122222334569999998432 346789999
Q ss_pred EEeCCCCCCcceEEEeecCceEEEEcCCCCCCeEEEEEEEEeCCCCCCCCCcEEEecCCCCCCCCCCceEEecCCCeEEE
Q psy8771 519 YTQDQSLPMSAWETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTL 598 (904)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~~V~a~~~~g~~~~S~~~~~~t~~~~p~~p~~~~~~~~~~~~~~l 598 (904)
....+.. ..........-...+.-..|.++..|...|.+.+..+.-..|-...-.+....|....++++.....+.+.|
T Consensus 105 ~~~gD~~-f~r~~~~~n~l~~~~i~s~~~~~~~~~~~Iia~~f~~~~sfsf~gVE~~~~~~P~ei~~~~~~~d~~~~i~l 183 (343)
T COG3401 105 RQNGDGK-FLRTGLVKNRLFVEFIDSDLGHNEKYMELIIAADFQMGKSFSFTGVEATPKAEPKEITNVRVSFDLGNNIEL 183 (343)
T ss_pred EecCchh-hhhhhHHHhccchhheecccccccceeeeEEeecccccceeeeeeeecccccCCceeeeeeeecCCCCccee
Confidence 8876643 111001111112234566899999999999999887654344222222333344445566666777888999
Q ss_pred EEeCCCCCCCCceEEEEEeccCCCCCcceEEEeeccceEEEeccCCCCCCCceeeEEEEEEeCCccccceEEecccceE-
Q psy8771 599 AWSKPTHSGENIISYELYWNDTYAKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVETY- 677 (904)
Q Consensus 599 ~W~~~~~~~~~~~~y~v~~~~~~~~p~~l~~~~~~~~~~~l~w~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~- 677 (904)
+|+.++. ...|+|+-...+......+.....+.+
T Consensus 184 s~dg~~~---------------------------------------------~~yy~IY~~~~g~e~~~~ia~t~~n~y~ 218 (343)
T COG3401 184 SEDGSEA---------------------------------------------EDYYRIYASDSGNEEYGFIAQTTENSYY 218 (343)
T ss_pred eccCccc---------------------------------------------cceEEEeccCCccccccceeeccccchh
Confidence 9998764 337777666555444444443333333
Q ss_pred -EEeCCCCCcEEEEEEEEEcCCC-CCCCCCCeeE-EecCCCCCC-CCCCcEEEecCCCEEEEEecCCCCCCCCccEEEEE
Q psy8771 678 -SLTGLYPNTLYYIWLAAQSPRG-EGATTPPIPV-RTKQYVPGA-PPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYK 753 (904)
Q Consensus 678 -~l~~L~p~t~Y~v~V~a~~~~G-~~~~s~~~~~-~t~~~~p~~-~P~~l~~~~~~~~~v~l~W~~~~~~~~~g~~~~Y~ 753 (904)
...+| |..|...|.+++..| ++..+....+ .|....+.. +|.... ....+.|.|+.... -....|.
T Consensus 219 d~~egl--ga~~~y~VTtVd~~~~es~lp~~~t~~~~~g~~e~pt~~g~t~----~~s~i~V~~E~~~~----~~av~yt 288 (343)
T COG3401 219 DVKEGL--GAVEYYKVTTVDNTGFESDLPNEPTVGETGGRYEVPTIPGETT----EASFIGVAAEQNQL----RQAVTYT 288 (343)
T ss_pred hhhhcc--CceeEEEEEEEcCCcceeccCCccccccccCCcccccCCCcee----eeeeeeEEeccccc----ceeeEEe
Confidence 34455 778888888888654 4444443322 233332221 122111 23345677776522 1234455
Q ss_pred EEEEEccCCCCccEEEEecCcceEEecCCCCCceEEEEEEEeeCCCCC
Q psy8771 754 LQFVETGRSDSEASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDG 801 (904)
Q Consensus 754 v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~g 801 (904)
++--..+.. .....+ ..+......+..+..|.+.|.+.+..|.+
T Consensus 289 vyr~~~g~~---~~~f~i-t~~d~~d~~~ltg~~~~y~v~~v~~~gls 332 (343)
T COG3401 289 VYRVEDGTP---TKFFTI-TETDGQDNDMLTGVEYRYEVVAVDKAGLS 332 (343)
T ss_pred eeeccCCCc---ceeeee-eeccccchhhccccceeEEEEEecccccc
Confidence 543333211 111111 56667778888999999999999988864
No 135
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=97.98 E-value=4.1e-05 Score=61.48 Aligned_cols=59 Identities=22% Similarity=0.350 Sum_probs=40.5
Q ss_pred CeEEEEEEcc-CCCCeEEEeeCCccccCCCCcee--e-c------ceEEEEeee--cCCeEEEEEEEecCcc
Q psy8771 122 PLNLSCVAVG-SPMPFVKWRKGQNIELTPDDKLP--V-G------RNVLTLDRV--TESENYTCIAASVLGV 181 (904)
Q Consensus 122 ~~~l~C~~~g-~p~p~i~W~k~~~~~~~~~~~~~--~-~------~~~l~i~~l--~d~g~Y~c~a~n~~g~ 181 (904)
+++|.|.+.| .|.+.|+|+|+ +..+....... . + ...|.|... ++++.|+|.|.|..-.
T Consensus 1 ~~~L~C~v~g~~P~~~v~W~~~-g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~ 71 (82)
T cd05759 1 PYNLTCRARGAKPAAEIIWFRD-GEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALP 71 (82)
T ss_pred CEEEEEEEeCccCCCEEEEEEC-CEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCC
Confidence 4689999997 68899999999 66664432111 1 1 124555544 4788999999986644
No 136
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=97.91 E-value=0.00012 Score=58.67 Aligned_cols=78 Identities=28% Similarity=0.520 Sum_probs=54.8
Q ss_pred CCCCeEEEecCCceEEEEecCCCCCCCceeeEEEEEEeCCCCCCcceEEEeecC-ceEEEEcCCCCCCeEEEEEEEEeCC
Q psy8771 484 APRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDN-NQLTTISDLTPHTIYTIRVQAFTSV 562 (904)
Q Consensus 484 ~p~~l~v~~~~~~~~~l~W~~p~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~p~t~Y~~~V~a~~~~ 562 (904)
+|.++.+.....+++.|+|+++...+. .+|.+.|..........|....... ...+.+.+|.|++.|.|+|+|.+..
T Consensus 3 ~p~~~~~~~~~~~~~~v~W~~~~~~~~--~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~v~v~a~~~~ 80 (83)
T smart00060 3 PPSNLRVTDVTSTSVTLSWEPPPDDGI--TGYIVGYRVEYREEGSSWKEVNVTPSSTSYTLTGLKPGTEYEFRVRAVNGA 80 (83)
T ss_pred CCCcEEEEEEeCCEEEEEECCCCCCCC--CccEEEEEEEEecCCCccEEEEecCCccEEEEeCcCCCCEEEEEEEEEccc
Confidence 344577777777799999998654432 6787777765432112344444333 4679999999999999999999975
Q ss_pred C
Q psy8771 563 G 563 (904)
Q Consensus 563 g 563 (904)
|
T Consensus 81 g 81 (83)
T smart00060 81 G 81 (83)
T ss_pred C
Confidence 5
No 137
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=97.86 E-value=6.1e-05 Score=61.72 Aligned_cols=70 Identities=16% Similarity=0.237 Sum_probs=51.1
Q ss_pred CeEEcCCCCceEEecCCCeEEEEEEccCCCCeEEEeeCCccccCCC-CceeecceEEEEeee--cCCeEEEEEEEec
Q psy8771 105 PQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPD-DKLPVGRNVLTLDRV--TESENYTCIAASV 178 (904)
Q Consensus 105 P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~k~~~~~~~~~-~~~~~~~~~l~i~~l--~d~g~Y~c~a~n~ 178 (904)
|.|...|. ..+..|++++|.|... .+...+.|+|+ |...... .........|.|.++ +|+|.|+|+..+.
T Consensus 3 P~L~a~p~--~vV~~G~~VtL~C~~~-~~~~~f~l~k~-g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 3 PSLWAEPS--SVVPLGKPVTLRCQGP-YGAVEYRLYRE-GSTFAVKKPPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred CEEEecCC--CccCCCCcEEEEEecC-CCCCEEEEEEC-CCCccccccCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 55666664 6788999999999885 66778999999 5443221 111234567999999 6999999999875
No 138
>KOG4228|consensus
Probab=97.85 E-value=0.00012 Score=83.24 Aligned_cols=138 Identities=34% Similarity=0.399 Sum_probs=98.8
Q ss_pred EEEEEEEecCcceEEEEEEEEEeecCCCCCCCCCCcceEEEeecCCeEEEEEeCCCccceEEEEEEEeCCCCCCeEEeec
Q psy8771 170 NYTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISEVTATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEISG 249 (904)
Q Consensus 170 ~Y~c~a~n~~g~~~~~~~l~v~~~~~~~~~~P~~p~~l~~~~~~~~sv~l~W~~~~~~~~~y~v~~~~~~~~~~~~~~~~ 249 (904)
.|.|.+....|-....+.+.|. .-|..|....+......+....|.........|.+.++....+ +..+..
T Consensus 1 ~Y~~~~~~~~~~~~~~~~v~v~-------~~p~~~~~~~vt~~~~~~~~~~~~~~~t~~~~y~v~~~~~~s~--~~~~~~ 71 (1087)
T KOG4228|consen 1 NYTCLARSGLGPGELITYVRVN-------GGPPGPSTPNVTGSTATSWVQAELLGSTWPNYYQVIFKALSSG--YGYIDV 71 (1087)
T ss_pred CeeeeecccCCCccceEEEEec-------CCCCCCCCcccccccccceeehhhccCCChhhhheeeeEeccC--cceeec
Confidence 4999999999998888888888 6666676777888888899999998866778888888876554 444444
Q ss_pred ceeceEEEcCCCCCCeEEEEEEEEcCCCCCCCCCCeEEecCCCCCCCCCCceEecccCCCeeEEEecCC
Q psy8771 250 IITTYYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEP 318 (904)
Q Consensus 250 ~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~s~~s~~~~~~t~~~~p~~~p~~l~~~~~~~~~v~l~W~~p 318 (904)
.....+....+.+-+.+.+ .+.|..|.+..+.+..-++....+...+....+.......+.+.|..+
T Consensus 72 ~~~~~~s~~~~~~~~~~~~--~evnt~~~a~~~~~~~~rt~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 138 (1087)
T KOG4228|consen 72 DLTTRLSYPCLSPPSFLEL--VEVNTIGRAPFQCPVAPRTGEQATLSLQRDVQALMLSAATAHVNWRRF 138 (1087)
T ss_pred cceeecccCCCCCcchhhh--hhcccccccccccccCCccccccccccccchhhhhhhhhhhccCcccc
Confidence 4445677788888888887 888888887766666555555444445555444444455555555543
No 139
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=97.80 E-value=0.00017 Score=61.31 Aligned_cols=73 Identities=16% Similarity=0.228 Sum_probs=53.5
Q ss_pred cCCCeEEEEEEccCC------CCeEEEeeCCcc--c----c-C----------CCCceee-----cceEEEEeee--cCC
Q psy8771 119 LDSPLNLSCVAVGSP------MPFVKWRKGQNI--E----L-T----------PDDKLPV-----GRNVLTLDRV--TES 168 (904)
Q Consensus 119 ~g~~~~l~C~~~g~p------~p~i~W~k~~~~--~----~-~----------~~~~~~~-----~~~~l~i~~l--~d~ 168 (904)
.|++++|.|.....| ...|.|+|.... . + . ...|+.. ++.+|.|.++ +|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 489999999988764 357999995211 0 1 0 1134433 2458999999 699
Q ss_pred eEEEEEEEecCcceEEEEEEEEE
Q psy8771 169 ENYTCIAASVLGVIETSTIVKVQ 191 (904)
Q Consensus 169 g~Y~c~a~n~~g~~~~~~~l~v~ 191 (904)
|.|.|.+.+..+..+....|.|.
T Consensus 81 G~Y~C~v~~~~~~~~~~~~l~v~ 103 (106)
T cd05877 81 GRYRCEVIDGLEDESVVVALRLR 103 (106)
T ss_pred EEEEEEEEecccceEEEEEEEEE
Confidence 99999999988888888888876
No 140
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=97.80 E-value=0.00019 Score=60.72 Aligned_cols=73 Identities=21% Similarity=0.292 Sum_probs=52.0
Q ss_pred cCCCeEEEEEEccCC------------CCeEEEeeCC-cc---cc-----------CCCCceee-------cceEEEEee
Q psy8771 119 LDSPLNLSCVAVGSP------------MPFVKWRKGQ-NI---EL-----------TPDDKLPV-------GRNVLTLDR 164 (904)
Q Consensus 119 ~g~~~~l~C~~~g~p------------~p~i~W~k~~-~~---~~-----------~~~~~~~~-------~~~~l~i~~ 164 (904)
.|++++|.|...... .+.|.|+|-. +. .+ ....|+.+ ++.+|+|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 489999999998653 4689999841 11 01 11124443 467999999
Q ss_pred e--cCCeEEEEEEEecCcceEEEEEEEEE
Q psy8771 165 V--TESENYTCIAASVLGVIETSTIVKVQ 191 (904)
Q Consensus 165 l--~d~g~Y~c~a~n~~g~~~~~~~l~v~ 191 (904)
| +|+|.|.|.+.+..+.......|.|.
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~ 109 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVK 109 (112)
T ss_pred cccccCEEEEEEEecCCCCceeEEEEEEE
Confidence 9 79999999999766666677677665
No 141
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.79 E-value=0.00012 Score=62.89 Aligned_cols=69 Identities=16% Similarity=0.283 Sum_probs=51.3
Q ss_pred CCCCceEEecCCCeEEEEEEccCCCCeEEEeeCCcc-cc------------CCCCceee------cceEEEEeee--cCC
Q psy8771 110 PPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNI-EL------------TPDDKLPV------GRNVLTLDRV--TES 168 (904)
Q Consensus 110 ~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~k~~~~-~~------------~~~~~~~~------~~~~l~i~~l--~d~ 168 (904)
.|.. +.+.+|++++|.|.+.+.+...+.|+|.... .. ....|+.+ ...+|.|.++ +|+
T Consensus 4 ~~~~-v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Ds 82 (109)
T cd04983 4 SPQS-LSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDS 82 (109)
T ss_pred cCCc-eEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHC
Confidence 4455 8999999999999999988889999984211 00 12344433 2458999999 699
Q ss_pred eEEEEEEEecC
Q psy8771 169 ENYTCIAASVL 179 (904)
Q Consensus 169 g~Y~c~a~n~~ 179 (904)
|.|.|.+.+..
T Consensus 83 G~Y~C~~~~~~ 93 (109)
T cd04983 83 AVYFCALSESG 93 (109)
T ss_pred EEEEEEEecCC
Confidence 99999998754
No 142
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=97.76 E-value=0.00022 Score=57.10 Aligned_cols=76 Identities=32% Similarity=0.537 Sum_probs=54.0
Q ss_pred CCcceEEEeeccceEEEeccCCCCCCCceeeEEEEEEeCCccc---cceEEe-cccceEEEeCCCCCcEEEEEEEEEcCC
Q psy8771 623 KPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKA---KHHRRI-GLVETYSLTGLYPNTLYYIWLAAQSPR 698 (904)
Q Consensus 623 ~p~~l~~~~~~~~~~~l~w~~~~~~~~~~~~y~v~~~~~~~~~---~~~~~~-~~~~~~~l~~L~p~t~Y~v~V~a~~~~ 698 (904)
+|.++.+......++.|+|.++..... .+|.+.|....... +..... .....+.+.+|.|++.|.|+|+|++..
T Consensus 3 ~p~~~~~~~~~~~~~~v~W~~~~~~~~--~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~v~v~a~~~~ 80 (83)
T smart00060 3 PPSNLRVTDVTSTSVTLSWEPPPDDGI--TGYIVGYRVEYREEGSSWKEVNVTPSSTSYTLTGLKPGTEYEFRVRAVNGA 80 (83)
T ss_pred CCCcEEEEEEeCCEEEEEECCCCCCCC--CccEEEEEEEEecCCCccEEEEecCCccEEEEeCcCCCCEEEEEEEEEccc
Confidence 456677877778899999997654432 67777776554332 222222 224689999999999999999999975
Q ss_pred CC
Q psy8771 699 GE 700 (904)
Q Consensus 699 G~ 700 (904)
|.
T Consensus 81 g~ 82 (83)
T smart00060 81 GE 82 (83)
T ss_pred CC
Confidence 53
No 143
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=97.75 E-value=0.00023 Score=60.74 Aligned_cols=67 Identities=13% Similarity=0.243 Sum_probs=47.8
Q ss_pred eEEecCCCeEEEEEEccCC----CCeEEEee-CC-------------ccccC-C----CCcee------ecceEEEEeee
Q psy8771 115 LEVMLDSPLNLSCVAVGSP----MPFVKWRK-GQ-------------NIELT-P----DDKLP------VGRNVLTLDRV 165 (904)
Q Consensus 115 ~~~~~g~~~~l~C~~~g~p----~p~i~W~k-~~-------------~~~~~-~----~~~~~------~~~~~l~i~~l 165 (904)
+.+..|+.++|.|...... ...|+|.+ .. |.... . ..|+. .++.+|.|.+|
T Consensus 8 v~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~nv 87 (116)
T cd05879 8 VYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIHNL 87 (116)
T ss_pred EEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEccC
Confidence 8899999999999998643 35899933 11 22211 1 12443 25678999999
Q ss_pred --cCCeEEEEEEEecCcc
Q psy8771 166 --TESENYTCIAASVLGV 181 (904)
Q Consensus 166 --~d~g~Y~c~a~n~~g~ 181 (904)
+|.|.|+|.+.|.-+.
T Consensus 88 ~~sD~G~Y~C~v~n~p~~ 105 (116)
T cd05879 88 DYTDNGTFTCDVKNPPDI 105 (116)
T ss_pred CcccCEEEEEEEEcCCCc
Confidence 7999999999986654
No 144
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=97.74 E-value=0.00021 Score=60.77 Aligned_cols=73 Identities=22% Similarity=0.383 Sum_probs=53.3
Q ss_pred cCCCeEEEEEEccCC------CCeEEEeeCC---c-c--ccC-CC----------Cceee-----cceEEEEeee--cCC
Q psy8771 119 LDSPLNLSCVAVGSP------MPFVKWRKGQ---N-I--ELT-PD----------DKLPV-----GRNVLTLDRV--TES 168 (904)
Q Consensus 119 ~g~~~~l~C~~~g~p------~p~i~W~k~~---~-~--~~~-~~----------~~~~~-----~~~~l~i~~l--~d~ 168 (904)
.|++++|.|.....+ .+.|.|+|.. . . .+. .+ .|+.. ++.+|.|.++ +|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 489999999998764 4689999962 1 1 010 11 12211 4568999999 699
Q ss_pred eEEEEEEEecCcceEEEEEEEEE
Q psy8771 169 ENYTCIAASVLGVIETSTIVKVQ 191 (904)
Q Consensus 169 g~Y~c~a~n~~g~~~~~~~l~v~ 191 (904)
|.|.|.+.+..+.......|.|.
T Consensus 81 G~Y~C~v~~~~~~~~~~v~L~V~ 103 (106)
T cd05714 81 GRYRCEVIDGIEDEQDTVELEVR 103 (106)
T ss_pred EEEEEEEEcCCCceEEEEEEEEE
Confidence 99999999987878888888887
No 145
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=97.74 E-value=0.00025 Score=59.52 Aligned_cols=71 Identities=21% Similarity=0.220 Sum_probs=48.2
Q ss_pred CCCeEEEEEEccCCC---CeEEEeeCCcccc----------C------CCCceee-------cceEEEEeee--cCCeEE
Q psy8771 120 DSPLNLSCVAVGSPM---PFVKWRKGQNIEL----------T------PDDKLPV-------GRNVLTLDRV--TESENY 171 (904)
Q Consensus 120 g~~~~l~C~~~g~p~---p~i~W~k~~~~~~----------~------~~~~~~~-------~~~~l~i~~l--~d~g~Y 171 (904)
|++++|.|...+... ..|.|+|.....+ . ...|+.+ ++.+|.|.+| +|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 688999999864322 3578888532111 0 1124432 2358999999 799999
Q ss_pred EEEEEecCcceEEEEEEEE
Q psy8771 172 TCIAASVLGVIETSTIVKV 190 (904)
Q Consensus 172 ~c~a~n~~g~~~~~~~l~v 190 (904)
.|.+.|..+..++...|.|
T Consensus 81 ~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEecCCcEEEEEEEEEE
Confidence 9999998777777776665
No 146
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=97.70 E-value=0.0002 Score=59.19 Aligned_cols=62 Identities=18% Similarity=0.321 Sum_probs=45.8
Q ss_pred CCCeEEEEEEccCCCCeEEEeeCCccccC-----------------CCCceee-cceEEEEeee--cCCeEEEEEEEecC
Q psy8771 120 DSPLNLSCVAVGSPMPFVKWRKGQNIELT-----------------PDDKLPV-GRNVLTLDRV--TESENYTCIAASVL 179 (904)
Q Consensus 120 g~~~~l~C~~~g~p~p~i~W~k~~~~~~~-----------------~~~~~~~-~~~~l~i~~l--~d~g~Y~c~a~n~~ 179 (904)
|++|+|.|.........|.|+++...... ...|+.. .+++|.|.++ +|+|.|+|.+....
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~~ 80 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIISTN 80 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcCC
Confidence 78999999998877778999996322110 1123333 4689999999 69999999998876
Q ss_pred cc
Q psy8771 180 GV 181 (904)
Q Consensus 180 g~ 181 (904)
|.
T Consensus 81 ~~ 82 (92)
T cd05741 81 GV 82 (92)
T ss_pred Cc
Confidence 54
No 147
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=97.69 E-value=0.4 Score=61.78 Aligned_cols=288 Identities=15% Similarity=0.117 Sum_probs=137.4
Q ss_pred EEEecc-CCceEEEEeCCCCCC--Cc-eecccccccccceEEEEeeeccCCeeeeeeeeccCCCCCCCCeEEcCCCCceE
Q psy8771 41 QVRPLS-SSTMVIQWDEPETPN--GQ-ITHPPTRAARSHARLAAQSVLRRGRLAHAVRQVADPVRRVPPQFSIPPPALLE 116 (904)
Q Consensus 41 ~~~~~~-~~s~~v~W~~~~~~~--g~-i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~~~~~~~~P~~~~~~~~~~~ 116 (904)
.|...+ .+.+.-.|+=.+... ++ .+..-..+..|.+++.+.+..+.. .....+.|.+++. .|...+.. ..
T Consensus 1449 ~Ftd~StGt~~Sy~WdFGDGstst~qnptHtY~~~GtYtVtLTvtN~~Gss-t~T~~VtV~~pV~----~~tinas~-~~ 1522 (2740)
T TIGR00864 1449 LFSAFGRARNASYLWDFGDGGLLEGPEILHAFNSPGDFNIRLAAANEVGKN-EATLNVAVKARVR----GLTINASL-TN 1522 (2740)
T ss_pred EEeecCCCCceEEEEECCCCCccCccceEEEcCCCceEEEEEEEECCCCce-EEEEEEEEecccc----ceEEcCCC-cc
Confidence 344543 344566676543221 11 222223344566666665555442 3334444433211 12222222 34
Q ss_pred EecCCCeEEEEEE-ccCCCCeEEEeeCCccccCCCCceeecceEEEEeeecCCeEEEE--EEEecCcceEEEEEEEEEee
Q psy8771 117 VMLDSPLNLSCVA-VGSPMPFVKWRKGQNIELTPDDKLPVGRNVLTLDRVTESENYTC--IAASVLGVIETSTIVKVQCK 193 (904)
Q Consensus 117 ~~~g~~~~l~C~~-~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~l~i~~l~d~g~Y~c--~a~n~~g~~~~~~~l~v~~~ 193 (904)
+..+..+.|.-.. .|. .....|..+++..... .+ .-.+......|.|++ .|.|..|....+..+.|+.
T Consensus 1523 vpl~~sV~Fta~~s~Gs-~v~ysWdFGDg~ts~~------~n-pt~~yTY~spGtYtVtLTvtN~~Gs~~~T~~i~V~~- 1593 (2740)
T TIGR00864 1523 VPLNGSVHFEAHLDAGD-DVRFSWILCDHCTPIF------GG-NTIFYTFRSVGTFNIIVTAENDVGAAQASIFLFVLQ- 1593 (2740)
T ss_pred ccccceEEEEEEccCCC-ceeEEEEeCCCCcccc------CC-CceEEeecCCceEEEEEEEecCCCccceeEEEEEee-
Confidence 4456677777543 344 4468899874432211 11 111222346699986 6889999888887777772
Q ss_pred cCCCCCCCCCCcceEEEe------------------ecCCeEEEEEeCCCccceEEEEEEEeCCC-CCCeEEeecceece
Q psy8771 194 YAPLLTLPVAPLDVKISE------------------VTATSVRLDWTYPSETLLYYVIQYKPKAA-NTPYSEISGIITTY 254 (904)
Q Consensus 194 ~~~~~~~P~~p~~l~~~~------------------~~~~sv~l~W~~~~~~~~~y~v~~~~~~~-~~~~~~~~~~~~~~ 254 (904)
+...+++.. .+..++.+.=....+....|.+.+...+. +.... ......
T Consensus 1594 ---------~I~GlqI~~~~~~gg~~~~~~~~~~~~~t~~~v~l~~~~~~GTnvsysW~~~~~n~~dg~~~---~~tGk~ 1661 (2740)
T TIGR00864 1594 ---------EIEGLQILGETAEGGGGGVQELDGCYFETNHTVQFHAGFKDGTNLSFSWNAILDNEPDGPAF---AGSGKG 1661 (2740)
T ss_pred ---------cccceEEEeecccccCCcccccccceeccCCEEEeeeccCCCCeeEEEEEEecCCCCCCccc---cccCce
Confidence 111222211 11122222211123333344444421111 11111 111123
Q ss_pred EEEcCCCCCCeEEEEEEEEcCCCCCCCCCCeEEecC----------CCCCCCCCCceEecccCCCeeEEEecCCCCCCce
Q psy8771 255 YTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTG----------ETEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQ 324 (904)
Q Consensus 255 ~~i~~L~p~~~Y~~~v~a~n~~g~s~~s~~~~~~t~----------~~~p~~~p~~l~~~~~~~~~v~l~W~~p~~~~~~ 324 (904)
..+.-..+| .|.+++.|.|..|....+....+... .......+..+.+.....+.+..+|.-.++....
T Consensus 1662 ~~vt~~~pG-~Y~VtL~aSN~vG~~t~s~~i~v~epi~~L~L~aS~~~aavn~~V~fs~~lt~GS~vty~W~~gdG~s~~ 1740 (2740)
T TIGR00864 1662 AKLNPLEAG-PCDIFLQAANLLGQATADCTIDFLEPAGNLMLQASDNPAAVNALINLSAELAEGSGLQYRWFLEEGDDLE 1740 (2740)
T ss_pred eEEecCCCc-eEEEEEEEeecccceeeEEEEEEEEEcCceEEeccCCcccCCCeEEEEEEecCCCCcEEEEEECCCCCcc
Confidence 455556776 79999999999998754433333210 0111223334555445667788888754432110
Q ss_pred eeEEEEEeeceeEEEEEcCCCCCcEEEEEEEEEcCCCCCCCC
Q psy8771 325 ITAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATT 366 (904)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~L~~~~~Y~v~v~a~~~~g~~~~s 366 (904)
. ....+..+ ...-..|.|.+.+.|..|....+
T Consensus 1741 ~---------s~p~~tHt-f~~~G~y~VtVta~N~vss~~~s 1772 (2740)
T TIGR00864 1741 T---------SEPFMSHS-FPSAGLHLVTMKAFNELGSANAS 1772 (2740)
T ss_pred c---------CCCceEEE-ccCCceEEEEEEEEcccccccee
Confidence 0 00011111 22334799999999999866544
No 148
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=97.66 E-value=0.00076 Score=60.67 Aligned_cols=105 Identities=17% Similarity=0.259 Sum_probs=60.9
Q ss_pred cccccccceEEEEeeeccCCeeeeeeeeccCCCCCCCCeEEcCCCCceEEecCCCeEEEEEEccC-CC-CeEEEeeCCcc
Q psy8771 68 PTRAARSHARLAAQSVLRRGRLAHAVRQVADPVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGS-PM-PFVKWRKGQNI 145 (904)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~~~~~~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~-p~-p~i~W~k~~~~ 145 (904)
.+...|...+.|..............+.+ ..||.+...+.. .....|+.++|.|.+.|. |. +.|+|++++..
T Consensus 7 ~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v-----~~~P~v~~~~~~-~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~ 80 (139)
T cd05771 7 GLTVHDEGTYICSVSTPPHQAQQIIQLSV-----SEPPRVRLSLEK-LVSMIEEPQTLICHIAGYYPLDVQVEWTREPPG 80 (139)
T ss_pred CCCHHHCEEEEEEEEccCcceeeEEEEEE-----ecCCceEEeCCC-ceeecCCcEEEEEEECCCCCCCeEEEEEECCCC
Confidence 33444545555555433222333444544 467888777765 555689999999999996 54 48999998432
Q ss_pred cc-----CCCC----ceeecceEEEEeee--------cCCeEEEEEEEec
Q psy8771 146 EL-----TPDD----KLPVGRNVLTLDRV--------TESENYTCIAASV 178 (904)
Q Consensus 146 ~~-----~~~~----~~~~~~~~l~i~~l--------~d~g~Y~c~a~n~ 178 (904)
.. ..+. .....++++.+... .++..|+|.+.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~ 130 (139)
T cd05771 81 DSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHV 130 (139)
T ss_pred CccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcC
Confidence 11 1111 11123444444321 2467899999753
No 149
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.63 E-value=0.00023 Score=60.93 Aligned_cols=68 Identities=21% Similarity=0.333 Sum_probs=49.2
Q ss_pred CCCCceEEecCCCeEEEEEEccCCCCeEEEeeCCc-ccc----------------CCCCceee-----cceEEEEeee--
Q psy8771 110 PPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQN-IEL----------------TPDDKLPV-----GRNVLTLDRV-- 165 (904)
Q Consensus 110 ~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~k~~~-~~~----------------~~~~~~~~-----~~~~l~i~~l-- 165 (904)
.|.. +.+.+|++++|.|.+.+ +.+.|.|+|... ..+ ....|+.. ....|.|.++
T Consensus 4 ~p~~-~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~ 81 (110)
T cd05899 4 SPRY-LIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEP 81 (110)
T ss_pred CCCc-eEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCCh
Confidence 4445 89999999999999998 778899999522 110 01234432 2357999999
Q ss_pred cCCeEEEEEEEecC
Q psy8771 166 TESENYTCIAASVL 179 (904)
Q Consensus 166 ~d~g~Y~c~a~n~~ 179 (904)
+|+|.|.|.+.+..
T Consensus 82 ~Dsg~Y~Ca~~~~~ 95 (110)
T cd05899 82 EDSAVYLCASSLGG 95 (110)
T ss_pred hhCEEEEEEeeCCC
Confidence 69999999988643
No 150
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=97.61 E-value=0.00052 Score=58.37 Aligned_cols=73 Identities=25% Similarity=0.425 Sum_probs=53.0
Q ss_pred cCCCeEEEEEEccCC----------CCeEEEeeCC-ccc---c-----------CCCCceee-------cceEEEEeee-
Q psy8771 119 LDSPLNLSCVAVGSP----------MPFVKWRKGQ-NIE---L-----------TPDDKLPV-------GRNVLTLDRV- 165 (904)
Q Consensus 119 ~g~~~~l~C~~~g~p----------~p~i~W~k~~-~~~---~-----------~~~~~~~~-------~~~~l~i~~l- 165 (904)
.|++++|.|.....+ ...|.|+|.. +.. + ....|+.. ++.+|+|.+|
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 389999999998755 2569999842 111 0 01134433 3468999999
Q ss_pred -cCCeEEEEEEEecCcceEEEEEEEEE
Q psy8771 166 -TESENYTCIAASVLGVIETSTIVKVQ 191 (904)
Q Consensus 166 -~d~g~Y~c~a~n~~g~~~~~~~l~v~ 191 (904)
+|+|.|.|.+....+..+....|.|.
T Consensus 81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~ 107 (110)
T cd05878 81 SSDSGVYRCEVMHGIEDEQDTVPLEVT 107 (110)
T ss_pred hhhCEEEEEEEEeCCCcceEEEEEEEE
Confidence 69999999999877778888888886
No 151
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=97.58 E-value=0.00047 Score=57.67 Aligned_cols=70 Identities=19% Similarity=0.365 Sum_probs=48.8
Q ss_pred CCeEEEEEEccCC---CCeEEEeeCCcc--------------ccCC--CCceee-----cceEEEEeee--cCCeEEEEE
Q psy8771 121 SPLNLSCVAVGSP---MPFVKWRKGQNI--------------ELTP--DDKLPV-----GRNVLTLDRV--TESENYTCI 174 (904)
Q Consensus 121 ~~~~l~C~~~g~p---~p~i~W~k~~~~--------------~~~~--~~~~~~-----~~~~l~i~~l--~d~g~Y~c~ 174 (904)
++++|.|...+.+ ...|.|+|.... .+.. ..|+.. ++.+|.|.++ +|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 4789999998765 347999995321 0111 123322 3568999999 799999999
Q ss_pred EEe-cCcceEEEEEEEE
Q psy8771 175 AAS-VLGVIETSTIVKV 190 (904)
Q Consensus 175 a~n-~~g~~~~~~~l~v 190 (904)
+.+ ..|..+....|.|
T Consensus 81 v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 81 FATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEeCCCCcEEEEEEEEe
Confidence 875 5677777777766
No 152
>KOG3515|consensus
Probab=97.55 E-value=0.0081 Score=67.10 Aligned_cols=166 Identities=13% Similarity=0.064 Sum_probs=93.9
Q ss_pred CCCCeEEcCCCCceEEecCCCeEEEEEEccCCC-CeEEEeeCCccccCCCCc--ee--ecceEEEEeee--cCCeEEEEE
Q psy8771 102 RVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPM-PFVKWRKGQNIELTPDDK--LP--VGRNVLTLDRV--TESENYTCI 174 (904)
Q Consensus 102 ~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~-p~i~W~k~~~~~~~~~~~--~~--~~~~~l~i~~l--~d~g~Y~c~ 174 (904)
..+|.+.......+...+++.....-.+.|.|. +++.|.+. +..+..... +. .+.+.+.+.++ .|+|.|.|+
T Consensus 398 l~~p~~L~~~~~~v~~~e~d~~~~~~~~~~~p~~~~~~w~~~-~~~~~~~~g~~~~v~~~~~~~s~~~v~~~d~g~y~~t 476 (741)
T KOG3515|consen 398 LPSPAFLVRHKTAVVAMEQDHQAAPLPVRGAPAERTFYWTFR-LYKLSQVDGGVVRVGAGAGLGSGVNVSRSDGGSYGLT 476 (741)
T ss_pred cCCchhhhhcccceeeccCccccccCcccCCCcccchhheec-ceecccccCceEEeeccccccccceeeeccCCcceee
Confidence 445555444333266667777776666778775 68999998 555544322 22 24444556666 699999999
Q ss_pred EEecCcceEEEEEEEEEeecCCCCCCCCCCcceEEEeecCCeEEEEEeCCCccceEEEEEEEeCCCCCCeE------Eee
Q psy8771 175 AASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISEVTATSVRLDWTYPSETLLYYVIQYKPKAANTPYS------EIS 248 (904)
Q Consensus 175 a~n~~g~~~~~~~l~v~~~~~~~~~~P~~p~~l~~~~~~~~sv~l~W~~~~~~~~~y~v~~~~~~~~~~~~------~~~ 248 (904)
+.|..|.......+.+. + .++.-+.+..+.....+++.........+.+.-.+.+...+.....+ ...
T Consensus 477 atns~gg~~~~~~~~~~--~----sp~~~~~~~~~~~~~~ns~~~~~~q~~~~~~~~m~~~~r~ge~~~~~~~~~~~~~~ 550 (741)
T KOG3515|consen 477 ATNSPGGAQAYLLLGVH--T----SPHNHHLQDQVEGATGNSVDGECMQDEQPQDQQMHHEPRSGEPPSDQIDQDAPQQQ 550 (741)
T ss_pred eccCCCceeeEEeeccc--c----CCcccccccccccCCCCcccceeeccccccchhhhcccccCCCCcccccccccccc
Confidence 99999988777666665 1 12223333344445555655555444333332223332222111111 112
Q ss_pred cceeceEEEcCCCCCCeEEEEEEEEc
Q psy8771 249 GIITTYYTVRNLSPYTEYEFYIIAVN 274 (904)
Q Consensus 249 ~~~~~~~~i~~L~p~~~Y~~~v~a~n 274 (904)
......+.+.+-.-...|.+.|.+.+
T Consensus 551 ~~~~a~~~~~~~~~~~~~~~~~~~d~ 576 (741)
T KOG3515|consen 551 LMAHAQLLVSGNSSLQASETACVVDG 576 (741)
T ss_pred cCCccceeecccccccccceEEeecC
Confidence 22335567777777777888888766
No 153
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=97.53 E-value=0.0012 Score=59.58 Aligned_cols=77 Identities=16% Similarity=0.332 Sum_probs=57.3
Q ss_pred eEEecCCCeEEEEEEc-cCCCCeEEEeeCCccc---------cCC--CCceee-----cceEEEEeee--cCCeEEEEEE
Q psy8771 115 LEVMLDSPLNLSCVAV-GSPMPFVKWRKGQNIE---------LTP--DDKLPV-----GRNVLTLDRV--TESENYTCIA 175 (904)
Q Consensus 115 ~~~~~g~~~~l~C~~~-g~p~p~i~W~k~~~~~---------~~~--~~~~~~-----~~~~l~i~~l--~d~g~Y~c~a 175 (904)
++|.+|++++|.|... +...+.|+|+|..+.. +.+ .+|+.. .+..|+|.++ +|+|.|.|..
T Consensus 25 v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~F 104 (189)
T PHA02987 25 ITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCIF 104 (189)
T ss_pred EEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEEE
Confidence 8889999999999985 7677889999962211 111 135543 5678999999 7999999965
Q ss_pred Ee-cCc-ceEEEEEEEEE
Q psy8771 176 AS-VLG-VIETSTIVKVQ 191 (904)
Q Consensus 176 ~n-~~g-~~~~~~~l~v~ 191 (904)
.- ..| ..+..+.|.|.
T Consensus 105 ~tfp~G~~~~gt~CLtVt 122 (189)
T PHA02987 105 NTLLSKNNEKGVVCLNVT 122 (189)
T ss_pred EecCCCCCceeEEEEEEE
Confidence 43 445 67788888887
No 154
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.50 E-value=0.00039 Score=59.15 Aligned_cols=66 Identities=23% Similarity=0.372 Sum_probs=48.1
Q ss_pred eEEecCCCeEEEEEEccC-CCCeEEEeeCCccc----c------------CCCCceee------cceEEEEeee--cCCe
Q psy8771 115 LEVMLDSPLNLSCVAVGS-PMPFVKWRKGQNIE----L------------TPDDKLPV------GRNVLTLDRV--TESE 169 (904)
Q Consensus 115 ~~~~~g~~~~l~C~~~g~-p~p~i~W~k~~~~~----~------------~~~~~~~~------~~~~l~i~~l--~d~g 169 (904)
+++.+|+.++|.|.+.+. +...+.|+|..... + ....|+.. ...+|.|.++ +|+|
T Consensus 1 ~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G 80 (105)
T cd00099 1 LSVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSA 80 (105)
T ss_pred CeecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCE
Confidence 357899999999999987 67789999852210 1 11234432 2448999999 6999
Q ss_pred EEEEEEEecCc
Q psy8771 170 NYTCIAASVLG 180 (904)
Q Consensus 170 ~Y~c~a~n~~g 180 (904)
.|.|.+.+..+
T Consensus 81 ~Y~C~v~~~~~ 91 (105)
T cd00099 81 VYYCAVSLSGG 91 (105)
T ss_pred EEEEEEecCCC
Confidence 99999987665
No 155
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.49 E-value=0.00054 Score=58.21 Aligned_cols=70 Identities=21% Similarity=0.369 Sum_probs=49.1
Q ss_pred EcCCCCceEEecCCCeEEEEEEccCC-CCeEEEeeCCc-cc---cC---------CCCceee----cceEEEEeee--cC
Q psy8771 108 SIPPPALLEVMLDSPLNLSCVAVGSP-MPFVKWRKGQN-IE---LT---------PDDKLPV----GRNVLTLDRV--TE 167 (904)
Q Consensus 108 ~~~~~~~~~~~~g~~~~l~C~~~g~p-~p~i~W~k~~~-~~---~~---------~~~~~~~----~~~~l~i~~l--~d 167 (904)
...|.. +.+.+|++++|.|.+.+.. ...+.|+|... .. +. ...|+.. ....|.|.++ +|
T Consensus 4 ~Q~p~~-~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~D 82 (106)
T cd04980 4 TQSPAT-LSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPED 82 (106)
T ss_pred EECCCc-EEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHH
Confidence 344555 8999999999999998876 56799998421 11 00 1124443 2347999999 69
Q ss_pred CeEEEEEEEec
Q psy8771 168 SENYTCIAASV 178 (904)
Q Consensus 168 ~g~Y~c~a~n~ 178 (904)
+|.|.|.+.+.
T Consensus 83 sg~Y~Ca~~~~ 93 (106)
T cd04980 83 AAVYYCQQYGT 93 (106)
T ss_pred CEEEEEEEeCC
Confidence 99999998653
No 156
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=97.45 E-value=0.00092 Score=57.48 Aligned_cols=67 Identities=19% Similarity=0.370 Sum_probs=46.2
Q ss_pred eEEecCCCeEEEEEEccCC----CCeEEEee---CCccc--c---C------CC----Cceee------cceEEEEeee-
Q psy8771 115 LEVMLDSPLNLSCVAVGSP----MPFVKWRK---GQNIE--L---T------PD----DKLPV------GRNVLTLDRV- 165 (904)
Q Consensus 115 ~~~~~g~~~~l~C~~~g~p----~p~i~W~k---~~~~~--~---~------~~----~~~~~------~~~~l~i~~l- 165 (904)
+.+.+|++++|.|.....+ ...|.|++ +++.. + . .. .|+.. ++.+|.|.++
T Consensus 8 v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~v~ 87 (115)
T cd05880 8 VEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQLQ 87 (115)
T ss_pred EEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEeeCC
Confidence 8999999999999987544 23699974 11211 1 0 11 12221 3568999999
Q ss_pred -cCCeEEEEEEEecCcc
Q psy8771 166 -TESENYTCIAASVLGV 181 (904)
Q Consensus 166 -~d~g~Y~c~a~n~~g~ 181 (904)
+|+|.|.|.+.|..+.
T Consensus 88 ~~D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 88 PTDNGTYTCQVKNPPDV 104 (115)
T ss_pred hhhCEEEEEEEEeCCCC
Confidence 6999999999986654
No 157
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=97.40 E-value=0.0017 Score=53.64 Aligned_cols=69 Identities=20% Similarity=0.373 Sum_probs=48.1
Q ss_pred CeEEEEEEccC-CCC---eEEEeeCC--cc-cc---C----------CCCceee-----cceEEEEeee--cCCeEEEEE
Q psy8771 122 PLNLSCVAVGS-PMP---FVKWRKGQ--NI-EL---T----------PDDKLPV-----GRNVLTLDRV--TESENYTCI 174 (904)
Q Consensus 122 ~~~l~C~~~g~-p~p---~i~W~k~~--~~-~~---~----------~~~~~~~-----~~~~l~i~~l--~d~g~Y~c~ 174 (904)
+++|.|..... |.. .|+|.|-. +. .+ . ...|+.. ++.+|.|.+| +|.|.|+|.
T Consensus 2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~ 81 (99)
T cd05886 2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYICE 81 (99)
T ss_pred cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEEE
Confidence 68999998843 222 58999831 11 11 0 1133332 3589999999 799999999
Q ss_pred EEe-cCcceEEEEEEEE
Q psy8771 175 AAS-VLGVIETSTIVKV 190 (904)
Q Consensus 175 a~n-~~g~~~~~~~l~v 190 (904)
+.+ ..|..++.+.|.|
T Consensus 82 v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 82 FATFPTGNRESQLNLTV 98 (99)
T ss_pred EEeCCCCCeEEEEEEEE
Confidence 999 6788888888876
No 158
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.40 E-value=0.00078 Score=58.42 Aligned_cols=63 Identities=17% Similarity=0.430 Sum_probs=46.4
Q ss_pred eEEecCCCeEEEEEEcc--CCCCeEEEeeCC--ccc---c--C-----------CCCceee------cceEEEEeee--c
Q psy8771 115 LEVMLDSPLNLSCVAVG--SPMPFVKWRKGQ--NIE---L--T-----------PDDKLPV------GRNVLTLDRV--T 166 (904)
Q Consensus 115 ~~~~~g~~~~l~C~~~g--~p~p~i~W~k~~--~~~---~--~-----------~~~~~~~------~~~~l~i~~l--~ 166 (904)
+.+.+|+.++|.|.+.+ .+.+.+.|+|.. ..+ + . ...|+.+ ....|.|.++ +
T Consensus 8 ~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~ 87 (116)
T cd04982 8 ITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLEKE 87 (116)
T ss_pred EEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECCHH
Confidence 88899999999999988 677889999942 111 0 0 1234443 2347999999 6
Q ss_pred CCeEEEEEEEe
Q psy8771 167 ESENYTCIAAS 177 (904)
Q Consensus 167 d~g~Y~c~a~n 177 (904)
|+|.|.|.+..
T Consensus 88 Dsg~Y~C~~~~ 98 (116)
T cd04982 88 DSATYYCAYWE 98 (116)
T ss_pred HCEEEEEEEec
Confidence 99999998864
No 159
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.39 E-value=0.0016 Score=51.02 Aligned_cols=68 Identities=25% Similarity=0.448 Sum_probs=43.5
Q ss_pred eEEEEEEcc-CCCCeEEEeeCCccccCCCCce--eec-----ceEEEEeee--cCCeEEEEEEEecCc-ceEEEEEEEEE
Q psy8771 123 LNLSCVAVG-SPMPFVKWRKGQNIELTPDDKL--PVG-----RNVLTLDRV--TESENYTCIAASVLG-VIETSTIVKVQ 191 (904)
Q Consensus 123 ~~l~C~~~g-~p~p~i~W~k~~~~~~~~~~~~--~~~-----~~~l~i~~l--~d~g~Y~c~a~n~~g-~~~~~~~l~v~ 191 (904)
+.|.|.+.| .|.+.|+|+|+ +.++...... ... ..+|.|.-- .|+..|+|+|.|..- ..+.+..|.|.
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~-~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~ 80 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKG-NKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ 80 (82)
T ss_pred EEEEEEecCCCCCCEEEEEEC-CEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence 689999997 58889999999 7777554221 111 123444322 477889999988542 24555555554
No 160
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=97.37 E-value=0.0017 Score=53.02 Aligned_cols=70 Identities=23% Similarity=0.332 Sum_probs=49.5
Q ss_pred CCeEEEEEEccCCC-CeEEEeeCCcc---cc-------------CCCCceee-----cceEEEEeee--cCCeEEEEEE-
Q psy8771 121 SPLNLSCVAVGSPM-PFVKWRKGQNI---EL-------------TPDDKLPV-----GRNVLTLDRV--TESENYTCIA- 175 (904)
Q Consensus 121 ~~~~l~C~~~g~p~-p~i~W~k~~~~---~~-------------~~~~~~~~-----~~~~l~i~~l--~d~g~Y~c~a- 175 (904)
++++|.|.....+. ..|+|.|-.+. .+ ....|+.. .+.+|.|.++ +|+|.|+|.+
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~ 80 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV 80 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence 46899999886543 47899984221 11 11134443 3779999999 7999999986
Q ss_pred EecCcceEEEEEEEE
Q psy8771 176 ASVLGVIETSTIVKV 190 (904)
Q Consensus 176 ~n~~g~~~~~~~l~v 190 (904)
....|..+++..|.|
T Consensus 81 tfP~G~~~~~~~l~~ 95 (96)
T cd05887 81 TFPLGNTQSSTTVTV 95 (96)
T ss_pred eCCCCCeeEEEEEEE
Confidence 557788888888876
No 161
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=97.37 E-value=0.0005 Score=57.04 Aligned_cols=73 Identities=10% Similarity=0.274 Sum_probs=49.3
Q ss_pred ecCCCeEEEEEEcc-CCCCeEEEeeCCccccCC----------------CCceee--cceEEEEeee--cCCeEEEEEEE
Q psy8771 118 MLDSPLNLSCVAVG-SPMPFVKWRKGQNIELTP----------------DDKLPV--GRNVLTLDRV--TESENYTCIAA 176 (904)
Q Consensus 118 ~~g~~~~l~C~~~g-~p~p~i~W~k~~~~~~~~----------------~~~~~~--~~~~l~i~~l--~d~g~Y~c~a~ 176 (904)
..|++|+|.|.... .....|.|+|.....+.. ..|+.+ ++.+|.|.++ +|+|.|.|.+.
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~ 81 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN 81 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence 47999999998865 555679999863211100 123333 3579999999 69999999998
Q ss_pred ecCcce-EEEEEEEE
Q psy8771 177 SVLGVI-ETSTIVKV 190 (904)
Q Consensus 177 n~~g~~-~~~~~l~v 190 (904)
+..|.. .....|.|
T Consensus 82 ~~~~~~~~~~f~L~v 96 (97)
T cd05775 82 TKNGVTITKEFTLHI 96 (97)
T ss_pred cCCCCeEEEEEEEEe
Confidence 877653 34444443
No 162
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=97.33 E-value=0.0019 Score=55.89 Aligned_cols=67 Identities=18% Similarity=0.292 Sum_probs=45.7
Q ss_pred eEEecCCCeEEEEEEccCC----CCeEEEeeCCc--c---c-c--------C-CC----Cceee------cceEEEEeee
Q psy8771 115 LEVMLDSPLNLSCVAVGSP----MPFVKWRKGQN--I---E-L--------T-PD----DKLPV------GRNVLTLDRV 165 (904)
Q Consensus 115 ~~~~~g~~~~l~C~~~g~p----~p~i~W~k~~~--~---~-~--------~-~~----~~~~~------~~~~l~i~~l 165 (904)
+.+.+|++++|.|...... ...|.|++... . . + . .. .|+.. ++.+|+|.++
T Consensus 8 v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 87 (116)
T cd05715 8 VYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVIHNL 87 (116)
T ss_pred EEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEEeeC
Confidence 8899999999999987543 24699986311 0 0 0 0 11 12222 2467999999
Q ss_pred --cCCeEEEEEEEecCcc
Q psy8771 166 --TESENYTCIAASVLGV 181 (904)
Q Consensus 166 --~d~g~Y~c~a~n~~g~ 181 (904)
+|+|.|.|.+.|.-+.
T Consensus 88 ~~~D~G~Y~C~v~~~~~~ 105 (116)
T cd05715 88 QFTDNGTYTCDVKNPPDI 105 (116)
T ss_pred CcccCEEEEEEEEeCCCC
Confidence 7999999999986553
No 163
>KOG4367|consensus
Probab=97.31 E-value=0.00019 Score=71.52 Aligned_cols=81 Identities=20% Similarity=0.270 Sum_probs=73.7
Q ss_pred ccceEEEeccCCCCCCCceeeEEEEEEeCCccccceEEecccceEEEeCCCCCcEEEEEEEEEcCCCCCCCCCCeeEEec
Q psy8771 633 QETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTK 712 (904)
Q Consensus 633 ~~~~~~l~w~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~v~V~a~~~~G~~~~s~~~~~~t~ 712 (904)
-.++++|+|..|.....+.++|.++....+++.......+..+-+++.||..++.|.-+|.|+|..|.++.|..+...|.
T Consensus 451 ~nns~t~~wkqp~~~~~~~dg~~leld~g~~g~frevy~g~etmctvdglhfns~y~arvka~n~tg~s~ys~tl~lqts 530 (699)
T KOG4367|consen 451 HNNSATLSWKQPPLSTVPADGYILELDDGNGGQFREVYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTS 530 (699)
T ss_pred cCCceEEEeecCCCCCCCCcceEEEeecCCCCceeEEEecCceeEEecceecchhHHHHHHHhhccCCCcccceeEeeec
Confidence 35789999998888888999999999999888888899999999999999999999999999999999999988877775
Q ss_pred C
Q psy8771 713 Q 713 (904)
Q Consensus 713 ~ 713 (904)
+
T Consensus 531 ~ 531 (699)
T KOG4367|consen 531 E 531 (699)
T ss_pred c
Confidence 4
No 164
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=97.27 E-value=0.0019 Score=53.99 Aligned_cols=69 Identities=19% Similarity=0.314 Sum_probs=47.6
Q ss_pred CeEEEEEEccCC---CCeEEEeeCCcc------c-cC----------CCCceee------cceEEEEeee--cCCeEEEE
Q psy8771 122 PLNLSCVAVGSP---MPFVKWRKGQNI------E-LT----------PDDKLPV------GRNVLTLDRV--TESENYTC 173 (904)
Q Consensus 122 ~~~l~C~~~g~p---~p~i~W~k~~~~------~-~~----------~~~~~~~------~~~~l~i~~l--~d~g~Y~c 173 (904)
+++|.|.....+ ...|.|+|.... . +. ...|... ++.+|.|.++ +|+|.|.|
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C 81 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC 81 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence 689999987554 347899994211 0 00 0123332 3668999999 79999999
Q ss_pred EEEe-cCcceEEEEEEEE
Q psy8771 174 IAAS-VLGVIETSTIVKV 190 (904)
Q Consensus 174 ~a~n-~~g~~~~~~~l~v 190 (904)
.+.+ ..|..++.+.|.|
T Consensus 82 ~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 82 RVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEeCCCCCeeeEEEEEe
Confidence 9987 6677777777776
No 165
>KOG0613|consensus
Probab=97.24 E-value=0.067 Score=62.82 Aligned_cols=380 Identities=13% Similarity=0.103 Sum_probs=176.9
Q ss_pred EEEEEEEeeCCCCCCCCCCceeeecCCCCCCCCCCeEEEecCCceEEEEecCCCCCC-CceeeEEEEEEeCCCCCCcceE
Q psy8771 453 YYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPN-GQITGYKVYYTQDQSLPMSAWE 531 (904)
Q Consensus 453 Y~~~v~a~~~~g~~~~s~~~~~~t~~~~p~~~p~~l~v~~~~~~~~~l~W~~p~~~~-~~i~~Y~v~~~~~~~~~~~~~~ 531 (904)
|.++++++...|+...-....+.-....|...|............+.+.|..+..+. ..+.+|.++....-+. ..|.
T Consensus 204 ~e~~v~~v~s~gqp~~~~~~~~~g~~i~~~~~~~~s~t~e~s~~~i~~~l~~~~G~~~~~~~~~l~e~~~~~~~--~t~~ 281 (1205)
T KOG0613|consen 204 YESRVRAVVSAGQPEPLERWEILGELIAPGSAPSMSVTLEASDRKIQLTLRAPRGPYSAHILGYLIEQRKHKGG--NTKT 281 (1205)
T ss_pred cceeEEEEEecCCCccchhhhhcccccCCCCccccccccchhheeeeEEeecCCCchHHHHhcchhhhcccCCC--cccc
Confidence 566666666666544322222222222333344322223334446777777644221 1455666655542111 2222
Q ss_pred EEee--cCceEEEEcCCCCCCeEEEEEEEEeCCCCCCCCCcE---EEecCCC-CCCCCCCceEEecCCCeEEEEEeCCCC
Q psy8771 532 TQVV--DNNQLTTISDLTPHTIYTIRVQAFTSVGPGPLSAPV---LVKTQQG-VPSQPRDLRAVDIQETAVTLAWSKPTH 605 (904)
Q Consensus 532 ~~~~--~~~~~~~~~~L~p~t~Y~~~V~a~~~~g~~~~S~~~---~~~t~~~-~p~~p~~~~~~~~~~~~~~l~W~~~~~ 605 (904)
.... ....+++...-.++..|.+++...-..|.+.+-... .+..... .+..+..+.+.......+.+.|.....
T Consensus 282 i~~~~~~~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~~~~ 361 (1205)
T KOG0613|consen 282 IQNDGPEPELSWTVADKRQGCQDRFKVTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTALSGT 361 (1205)
T ss_pred ccccCCccccceeeecccCCcccceeeeEEeeccccccCchhhhhhccCCccccccccccceeccccCcceeecccccCC
Confidence 2222 334445555556777888888887776655433222 2222111 223445566666666777777766532
Q ss_pred CCCCceEEEEEeccCCCCCcceEEEeeccceEEEeccCCCCCCCceeeEEEEEEeCCcccc--ceEEecccceEEEeCCC
Q psy8771 606 SGENIISYELYWNDTYAKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAK--HHRRIGLVETYSLTGLY 683 (904)
Q Consensus 606 ~~~~~~~y~v~~~~~~~~p~~l~~~~~~~~~~~l~w~~~~~~~~~~~~y~v~~~~~~~~~~--~~~~~~~~~~~~l~~L~ 683 (904)
. -...+.+|.+.-....+..+ ..........+.+.++.
T Consensus 362 ~----------------------------------------~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~ 401 (1205)
T KOG0613|consen 362 Q----------------------------------------KPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAG 401 (1205)
T ss_pred c----------------------------------------CCchheeecccccccccccccccccccccCcchhhhhcC
Confidence 0 12224455544443333322 22223345678889999
Q ss_pred CCcEEEEEEEEEcCCCCCCCCCCeeEEecCCCCCCCCCCcEEEecCC------CEEEEEecCCCCCCCCccEEEEEEEEE
Q psy8771 684 PNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQNVSCEPLSS------TSIRISWEPPPVERSNGHIVYYKLQFV 757 (904)
Q Consensus 684 p~t~Y~v~V~a~~~~G~~~~s~~~~~~t~~~~p~~~P~~l~~~~~~~------~~v~l~W~~~~~~~~~g~~~~Y~v~~~ 757 (904)
++..|..++.|.|..|.........+.-. .+...|..+....... ..+.+.-..+. + .+-+...
T Consensus 402 ~~e~~~~~~~a~n~~g~~~~~~~~~vs~~--~~gt~~~~~kk~~~~t~~L~~~~~i~~~~~~~s----~----~~~~~~~ 471 (1205)
T KOG0613|consen 402 PGEGYFTRVPAVNKGGTEQTIAESTVSEE--MPGTQPPKFKKDVSTTDLLTVKDEITVRTPDSS----T----SMPMTTV 471 (1205)
T ss_pred cccccccccceeccCCcccccchhhcccc--cCCCCCccccccccccccccCCcccccccCCCC----c----cccceeE
Confidence 99999999999999987654432222111 1222222222211111 22223222221 0 0001111
Q ss_pred Ec-c-CCCCccEEEEec----CcceEEecCCCCCceEEEEEEEeeCCCCCCCCCcEE-eecCCCCCCC-CccCC------
Q psy8771 758 ET-G-RSDSEASIVTLK----NQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPIT-IRTHEDDPSE-VCPTQ------ 823 (904)
Q Consensus 758 ~~-~-~~~~~~~~~~~~----~~~~~~i~~L~p~t~Y~~~V~a~~~~g~g~~s~~~~-~~t~~~~P~~-v~~~~------ 823 (904)
.. . ..........+. ...-..+.++..+..|.+..+-.+..+. .+.... .-....+|+. ++.-+
T Consensus 472 tt~~~~~~~s~~s~~l~r~~~tslLlk~~~~~~~A~~~~a~~~~~~k~~--~~~~~~l~~~~s~a~~~~~~~~~~~g~p~ 549 (1205)
T KOG0613|consen 472 TTIKDGLPLSDRSVTLTRDVLTSLLLKVASLSDGAQYTRALRTLQGKPV--PSLDRKLPAAKSSAPKPIHTQENQPGTPT 549 (1205)
T ss_pred eeccCCcccccccccccccchhhheeeccCCCccchhhhhhhccCCCCC--CcccccccccccCCcccccccccCCCCcc
Confidence 10 0 000001111111 5556667888888888777665543322 111111 1111111211 11100
Q ss_pred cceeeCCCCCceee-eeeee--cCCceEEecCCCeeEEEEcCCCCCcEEEEEEEEEecCCCCCCCC
Q psy8771 824 NDFRKNKKTNGSNF-KGGYL--NDPMRFDVSDGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSK 886 (904)
Q Consensus 824 ~~W~~p~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~a~n~~G~g~~s~ 886 (904)
+.|..-....+.+. .+... ..+.+........+...+.++.|+..|.+++.+.+..|.+..+.
T Consensus 550 l~~~~~~~E~~~vs~~~~~a~~qlg~~~~~~~r~gtt~t~~~~~p~~~~~~t~~~k~~~gE~~ps~ 615 (1205)
T KOG0613|consen 550 LEWEPKPAEASKVSLHYASATRQLGVWRVPESRPGTTETIGSILPGHEYHVTIKAKNELGESRPSS 615 (1205)
T ss_pred cccCCCcccccccchhhhhhhhhccCCcccccCCCcccccccccccccceeehhhhhcccccCCCC
Confidence 13432111111111 00000 00111111233338899999999999999999999999988773
No 166
>KOG4367|consensus
Probab=97.18 E-value=0.00048 Score=68.76 Aligned_cols=82 Identities=20% Similarity=0.435 Sum_probs=70.5
Q ss_pred cCCceEEEEecCCCCCCCceeeEEEEEEeCCCCCCcceEEEeecCceEEEEcCCCCCCeEEEEEEEEeCCCCCCCCCcEE
Q psy8771 493 LSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVGPGPLSAPVL 572 (904)
Q Consensus 493 ~~~~~~~l~W~~p~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~~V~a~~~~g~~~~S~~~~ 572 (904)
...++++|+|+.|...+.+.++|.++....++ ..++.+..+..+.++++||.-++.|.-+|.++|..|.+++|+.+.
T Consensus 450 t~nns~t~~wkqp~~~~~~~dg~~leld~g~~---g~frevy~g~etmctvdglhfns~y~arvka~n~tg~s~ys~tl~ 526 (699)
T KOG4367|consen 450 THNNSATLSWKQPPLSTVPADGYILELDDGNG---GQFREVYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLV 526 (699)
T ss_pred ccCCceEEEeecCCCCCCCCcceEEEeecCCC---CceeEEEecCceeEEecceecchhHHHHHHHhhccCCCcccceeE
Confidence 45679999999776666789999999887653 566788889999999999999999999999999999999998887
Q ss_pred EecCC
Q psy8771 573 VKTQQ 577 (904)
Q Consensus 573 ~~t~~ 577 (904)
.+|..
T Consensus 527 lqts~ 531 (699)
T KOG4367|consen 527 LQTSE 531 (699)
T ss_pred eeecc
Confidence 77743
No 167
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=97.18 E-value=0.0027 Score=50.74 Aligned_cols=58 Identities=21% Similarity=0.354 Sum_probs=37.9
Q ss_pred eEEEEEEccC-CCCeEEEeeCCccccCCCCcee--ecceEEEEee------e--cCCeEEEEEEEecCcc
Q psy8771 123 LNLSCVAVGS-PMPFVKWRKGQNIELTPDDKLP--VGRNVLTLDR------V--TESENYTCIAASVLGV 181 (904)
Q Consensus 123 ~~l~C~~~g~-p~p~i~W~k~~~~~~~~~~~~~--~~~~~l~i~~------l--~d~g~Y~c~a~n~~g~ 181 (904)
+.|.|.+.|. |.+.|+|+++ +..+....... ..++.+.+.. - .++..|+|.|.+....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~-~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKG-DKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred EEEEEEecCcCcCCeEEEEEC-CEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence 6899999875 8999999999 66665332111 1233333321 1 3568999999986654
No 168
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=97.12 E-value=0.0053 Score=51.86 Aligned_cols=36 Identities=17% Similarity=0.338 Sum_probs=31.6
Q ss_pred cceEEEEeee--cCCeEEEEEEEecCcceEEEEEEEEE
Q psy8771 156 GRNVLTLDRV--TESENYTCIAASVLGVIETSTIVKVQ 191 (904)
Q Consensus 156 ~~~~l~i~~l--~d~g~Y~c~a~n~~g~~~~~~~l~v~ 191 (904)
++.+|.|.++ +|+|.|.|.+.......+....|.|.
T Consensus 77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~ 114 (117)
T cd05901 77 GDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS 114 (117)
T ss_pred CceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence 3679999999 79999999999988888888888886
No 169
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=97.12 E-value=0.0037 Score=52.75 Aligned_cols=72 Identities=22% Similarity=0.383 Sum_probs=49.5
Q ss_pred CCCeEEEEEEccCC-------CCeEEEeeCC----ccc----c----------CCCCceee-------cceEEEEeee--
Q psy8771 120 DSPLNLSCVAVGSP-------MPFVKWRKGQ----NIE----L----------TPDDKLPV-------GRNVLTLDRV-- 165 (904)
Q Consensus 120 g~~~~l~C~~~g~p-------~p~i~W~k~~----~~~----~----------~~~~~~~~-------~~~~l~i~~l-- 165 (904)
|..++|.|...-.| .+.|.|.|.. ... . ....|+.+ ++.+|.|.+|
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~ 81 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY 81 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence 67889999966433 3678999741 110 0 11123333 3568999999
Q ss_pred cCCeEEEEEEEecCcceEEEEEEEEE
Q psy8771 166 TESENYTCIAASVLGVIETSTIVKVQ 191 (904)
Q Consensus 166 ~d~g~Y~c~a~n~~g~~~~~~~l~v~ 191 (904)
+|+|.|.|.+.......+....|.|.
T Consensus 82 ~D~G~Y~C~v~~g~~~~~~~v~L~V~ 107 (110)
T cd05902 82 SDSGTYRCEVVLGINDEQDTVPLEVT 107 (110)
T ss_pred HHCEEEEEEEEECCcccEEEEEEEEE
Confidence 79999999999866667788888776
No 170
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=97.09 E-value=0.0019 Score=55.86 Aligned_cols=64 Identities=17% Similarity=0.303 Sum_probs=46.4
Q ss_pred eEEecCCCeEEEEEEc-cCCCCeEEEeeCCcc----ccC--------------CCCceee------cceEEEEeee--cC
Q psy8771 115 LEVMLDSPLNLSCVAV-GSPMPFVKWRKGQNI----ELT--------------PDDKLPV------GRNVLTLDRV--TE 167 (904)
Q Consensus 115 ~~~~~g~~~~l~C~~~-g~p~p~i~W~k~~~~----~~~--------------~~~~~~~------~~~~l~i~~l--~d 167 (904)
+.+.+|+++.|.|... ......+.|++.... .+. ...|+.. .+.+|.|.+| +|
T Consensus 11 v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~~D 90 (114)
T PF07686_consen 11 VTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQPSD 90 (114)
T ss_dssp EEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESGGG
T ss_pred EEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCcCc
Confidence 9999999999999999 556678999994220 111 0122221 1347999999 69
Q ss_pred CeEEEEEEEec
Q psy8771 168 SENYTCIAASV 178 (904)
Q Consensus 168 ~g~Y~c~a~n~ 178 (904)
+|.|.|.+...
T Consensus 91 sG~Y~C~v~~~ 101 (114)
T PF07686_consen 91 SGTYFCQVSTS 101 (114)
T ss_dssp EEEEEEEEEES
T ss_pred CEEEEEEEEEC
Confidence 99999999876
No 171
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.09 E-value=0.0024 Score=55.29 Aligned_cols=68 Identities=22% Similarity=0.388 Sum_probs=48.2
Q ss_pred cCCCCceEEecCCCeEEEEEEccC-CCCeEEEeeCC-ccc---c---------CCCCceee------cceEEEEeee--c
Q psy8771 109 IPPPALLEVMLDSPLNLSCVAVGS-PMPFVKWRKGQ-NIE---L---------TPDDKLPV------GRNVLTLDRV--T 166 (904)
Q Consensus 109 ~~~~~~~~~~~g~~~~l~C~~~g~-p~p~i~W~k~~-~~~---~---------~~~~~~~~------~~~~l~i~~l--~ 166 (904)
..|.. +.+.+|++++|.|...+. ....+.|+|.. +.. + ....|+.+ ++.+|.|.++ +
T Consensus 4 q~~~~-v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~ 82 (116)
T cd07706 4 QAQPD-VSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLE 82 (116)
T ss_pred EeCCc-eEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHH
Confidence 34445 889999999999998864 45679999831 111 0 11245543 2347999999 6
Q ss_pred CCeEEEEEEEe
Q psy8771 167 ESENYTCIAAS 177 (904)
Q Consensus 167 d~g~Y~c~a~n 177 (904)
|+|.|.|.+..
T Consensus 83 Dsg~Y~C~~~~ 93 (116)
T cd07706 83 DSAKYFCALST 93 (116)
T ss_pred HCEEEEEEEEC
Confidence 99999999875
No 172
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=97.08 E-value=0.0035 Score=51.38 Aligned_cols=66 Identities=18% Similarity=0.180 Sum_probs=43.2
Q ss_pred eEEecCCCeEEEEEEcc-CCCCe--EEEeeCCccccCCCCcee------ecceEEEEeee-c-CCeEEEEEEEecCcc
Q psy8771 115 LEVMLDSPLNLSCVAVG-SPMPF--VKWRKGQNIELTPDDKLP------VGRNVLTLDRV-T-ESENYTCIAASVLGV 181 (904)
Q Consensus 115 ~~~~~g~~~~l~C~~~g-~p~p~--i~W~k~~~~~~~~~~~~~------~~~~~l~i~~l-~-d~g~Y~c~a~n~~g~ 181 (904)
..+.+|+.++|.|.+.| .|.+. |.|+|+ +..+....... ....+|.+.-- + ++..|+|+|.+..+.
T Consensus 11 ~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG-~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~~ 87 (100)
T cd05755 11 SWQPVGKNYTLQCDVPGVAPRQNLTVVLLRG-NETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETELDLRP 87 (100)
T ss_pred CcccCCCcEEEEEEEcCcCCCCcEEEEEeeC-CEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEeccCc
Confidence 44579999999999997 67776 799999 66664321110 01223333322 3 556899999987764
No 173
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.07 E-value=0.002 Score=53.78 Aligned_cols=62 Identities=15% Similarity=0.333 Sum_probs=44.0
Q ss_pred EEecCCCeEEEEEEccC--CCCeEEEeeCCc-cccC------------CCCceee----cceEEEEeee--cCCeEEEEE
Q psy8771 116 EVMLDSPLNLSCVAVGS--PMPFVKWRKGQN-IELT------------PDDKLPV----GRNVLTLDRV--TESENYTCI 174 (904)
Q Consensus 116 ~~~~g~~~~l~C~~~g~--p~p~i~W~k~~~-~~~~------------~~~~~~~----~~~~l~i~~l--~d~g~Y~c~ 174 (904)
.+.+|++++|.|.+.+. ....+.|++... .... ...|+.. ...+|.|.++ +|+|.|.|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~ 81 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ 81 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence 57799999999999876 566799998422 1110 0124443 2347999999 699999998
Q ss_pred EEe
Q psy8771 175 AAS 177 (904)
Q Consensus 175 a~n 177 (904)
+.+
T Consensus 82 ~~~ 84 (98)
T cd04984 82 VWD 84 (98)
T ss_pred Ecc
Confidence 875
No 174
>KOG3632|consensus
Probab=97.07 E-value=0.0038 Score=69.52 Aligned_cols=260 Identities=19% Similarity=0.214 Sum_probs=148.9
Q ss_pred CcceEEEeecCCeEEEEEeCCC-----ccceEEEEEEEeCCCCCCeEEeecceeceEEEcCCC-CCCeEEEEEEEEcCCC
Q psy8771 204 PLDVKISEVTATSVRLDWTYPS-----ETLLYYVIQYKPKAANTPYSEISGIITTYYTVRNLS-PYTEYEFYIIAVNNLG 277 (904)
Q Consensus 204 p~~l~~~~~~~~sv~l~W~~~~-----~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~-p~~~Y~~~v~a~n~~g 277 (904)
|..+.+......++.+.|++|. .++..|.+.... .-...+.....+...+..|. .+..|.+.|.+....|
T Consensus 581 pr~~~~vkqla~sv~vawepps~pP~~~~~~~~~~~v~~----elrq~l~~gs~tka~~E~ld~~a~s~~isvq~ltSrG 656 (1335)
T KOG3632|consen 581 PRTGAAVKQLAGSVHVAWEPPSSPPFTAPARMIGATVLM----ELRQTLYAGSLTKAMQESLDNSAHSGYISVQRLTSRG 656 (1335)
T ss_pred ccchhhhhhhccceeeeccCCCCCCccccceeeeeecch----hhhhhcccccchHHHHhhccccCCceeeehhhhhccC
Confidence 3344444555678999999973 233444443221 11111222222333344443 2446888888888888
Q ss_pred CCCCCCCeEEecCCCCCCCCCCceEecccCCCeeEEEecCCCCCCceeeEEEEEee----ceeEEEEEcCCCCCcEEEEE
Q psy8771 278 RGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITAKHHRRI----GLVETYSLTGLYPNTLYYIW 353 (904)
Q Consensus 278 ~s~~s~~~~~~t~~~~p~~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~~~~~~~~~----~~~~~~~~~~L~~~~~Y~v~ 353 (904)
.+.........-. . .+..|.++.+.+.+.++..++|-+......+.++-..... .....|++-+|.||+.|+++
T Consensus 657 sqd~lrc~Llvgg-~-a~vvpsqlrv~n~tqtSa~itwvp~nsn~~Hviyln~eE~~ps~a~~y~ytf~~lrpgt~y~a~ 734 (1335)
T KOG3632|consen 657 SQDQLRCILLVGG-A-APVVPSQLRVWNATQTSAMITWVPFNSNFLHVIYLNAEEPRPSVAEMYNYTFMRLRPGTDYWAS 734 (1335)
T ss_pred CCCcceeeEeccc-c-ccccchhhhhhhhhchhhheeeeecCCCcceeeecCCccCCCchhhhhHHHHhccCCCCcccee
Confidence 7765544433332 2 2478999999999999999999876555444433221111 12235677888888888887
Q ss_pred EEEEcCCCCCCCCCCcceeeccCCCCCCCCcccccccccceeeeEEEEeccccCcEEEEEEeeecCCCCCCCCCCcceEe
Q psy8771 354 LAAQSPRGEGATTPPIPVRTKQYGKTPGFGEQAAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRT 433 (904)
Q Consensus 354 v~a~~~~g~~~~s~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~g~~~~~~~~~~~~ 433 (904)
|-+.-.... ++..-.
T Consensus 735 vea~~p~q~-------------------------------------------pwdl~~---------------------- 749 (1335)
T KOG3632|consen 735 VEAALPRQE-------------------------------------------PWDLRM---------------------- 749 (1335)
T ss_pred cccccCcCC-------------------------------------------Cccccc----------------------
Confidence 765421100 000000
Q ss_pred eccCCCCceeeeeccCCeEEEEEEEEeeCCCCCCCCCCceeeecCCCCCCCCCCeEEEe-cCCceEEEEecCCCC-----
Q psy8771 434 KQYGKTPGFGEQALYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRP-LSSSTMVIQWDEPET----- 507 (904)
Q Consensus 434 ~~~~~~~~~~~~~L~p~~~Y~~~v~a~~~~g~~~~s~~~~~~t~~~~p~~~p~~l~v~~-~~~~~~~l~W~~p~~----- 507 (904)
.-.+.....+.+.|..+.|+.+|.++++.. .+...+.++|.+|--
T Consensus 750 -----------------------------v~~etr~atv~f~tLpAGppappldV~vE~g~spg~l~vswrPptldsag~ 800 (1335)
T KOG3632|consen 750 -----------------------------VPMETRQATVLFRTLPAGPPAPPLDVKVETGGSPGRLEVSWRPPTLDSAGC 800 (1335)
T ss_pred -----------------------------chhhhhccceeeecccCCCCCCchheeeecCCCCceeeeeccCceeccccc
Confidence 001122345677788888999999998865 456789999999621
Q ss_pred CCC-ceeeEEEEEEeCCCCCCcceEEEee--cCceEEEEcCCCC-CCeEEEEEEEEeCCCCCCCCC
Q psy8771 508 PNG-QITGYKVYYTQDQSLPMSAWETQVV--DNNQLTTISDLTP-HTIYTIRVQAFTSVGPGPLSA 569 (904)
Q Consensus 508 ~~~-~i~~Y~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~L~p-~t~Y~~~V~a~~~~g~~~~S~ 569 (904)
.+| .+++|.|+..... ...+.. ...+...+.-|.- -..-.|.|+.....|++.-|.
T Consensus 801 sngv~vtgYavyadgqk------v~Evafptagst~VelsQlq~~l~~~~V~vRtms~~gesvdsi 860 (1335)
T KOG3632|consen 801 SNGVAVTGYAVYADGQK------VEEVAFPTAGSTKVELSQLQDGLYHGAVGVRTMSVPGESVDSI 860 (1335)
T ss_pred cCceeeeeeeeeeCCce------eeeeecccCCceEEEeeeehhhheecceeEEecccCccccccc
Confidence 223 7899999877321 112222 2333344444444 334457777777777664443
No 175
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=97.04 E-value=0.0053 Score=51.00 Aligned_cols=71 Identities=20% Similarity=0.237 Sum_probs=47.6
Q ss_pred CCCeEEEEEEccCCC-CeEEEeeCCcc---cc----C-C--------CCceee-----cceEEEEeee--cCCeEEEEEE
Q psy8771 120 DSPLNLSCVAVGSPM-PFVKWRKGQNI---EL----T-P--------DDKLPV-----GRNVLTLDRV--TESENYTCIA 175 (904)
Q Consensus 120 g~~~~l~C~~~g~p~-p~i~W~k~~~~---~~----~-~--------~~~~~~-----~~~~l~i~~l--~d~g~Y~c~a 175 (904)
|++++|.|....... -.|.|+|..+. .+ . . ..|... .+.+|.|.++ +|+|.|.|..
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 789999998765543 36999985221 10 0 0 112221 3568999999 7999999986
Q ss_pred E-ecCcceEEEEEEEE
Q psy8771 176 A-SVLGVIETSTIVKV 190 (904)
Q Consensus 176 ~-n~~g~~~~~~~l~v 190 (904)
. ...|.....+.|+|
T Consensus 81 ~~~p~g~~~~~~~L~v 96 (97)
T cd05846 81 NTFPDGSKSGTMCLTV 96 (97)
T ss_pred EeCCCCCeeeEEEEEE
Confidence 5 46677777777776
No 176
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=97.02 E-value=0.0023 Score=53.10 Aligned_cols=62 Identities=29% Similarity=0.498 Sum_probs=43.2
Q ss_pred ecCCCeEEEEEEccC-CC-CeEEEeeCCccccCCCCc---e-eecceE------EEEeee--cCCeEEEEEEEecCc
Q psy8771 118 MLDSPLNLSCVAVGS-PM-PFVKWRKGQNIELTPDDK---L-PVGRNV------LTLDRV--TESENYTCIAASVLG 180 (904)
Q Consensus 118 ~~g~~~~l~C~~~g~-p~-p~i~W~k~~~~~~~~~~~---~-~~~~~~------l~i~~l--~d~g~Y~c~a~n~~g 180 (904)
..|+.++|.|.+.|. |. +.|+|+++ |..+..... . ...++. |.|... .+++.|+|.|.+...
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~-g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~ 86 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKN-GKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL 86 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEEC-CEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence 468999999999998 64 68999999 666654432 1 123333 333333 389999999988654
No 177
>KOG4152|consensus
Probab=97.00 E-value=0.0033 Score=64.83 Aligned_cols=74 Identities=34% Similarity=0.619 Sum_probs=59.5
Q ss_pred EEcCCCCCCeEEEEEEEEeCCCCCCCCCcEEEec-CCCCCCCCCCceEEecCCCeEEEEEeCCCCCC-CCceEEEEE
Q psy8771 542 TISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKT-QQGVPSQPRDLRAVDIQETAVTLAWSKPTHSG-ENIISYELY 616 (904)
Q Consensus 542 ~~~~L~p~t~Y~~~V~a~~~~g~~~~S~~~~~~t-~~~~p~~p~~~~~~~~~~~~~~l~W~~~~~~~-~~~~~y~v~ 616 (904)
.-..|.+|+.|+|+|.|+|..|.+++|....+.| .++.|.+|..+++.. +-..+.+.|.++..++ +.|..|..+
T Consensus 650 ~k~~lv~Gq~yrfrV~aIng~G~gp~s~i~~~kTc~pG~P~apS~~ri~k-~~eGi~l~weppt~p~sg~Iieys~y 725 (830)
T KOG4152|consen 650 VKTSLVTGQAYRFRVTAINGKGPGPASTILKLKTCAPGKPTAPSGARIKK-TIEGISLVWEPPTKPGSGTIIEYSPY 725 (830)
T ss_pred cccccccccceeeeeeeeeccCCCchhhheeeeeccCCCCCCcccccccc-cccceeecccCCCCCCCcceEEeehh
Confidence 4457889999999999999999999999988776 456677888887765 5667999999998874 456666655
No 178
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=97.00 E-value=0.0066 Score=48.48 Aligned_cols=57 Identities=28% Similarity=0.507 Sum_probs=38.3
Q ss_pred eEEEEEEccC-CCCeEEEeeCCccccCCCCc-ee-ecc-eEEEEee------e--cCCeEEEEEEEecCc
Q psy8771 123 LNLSCVAVGS-PMPFVKWRKGQNIELTPDDK-LP-VGR-NVLTLDR------V--TESENYTCIAASVLG 180 (904)
Q Consensus 123 ~~l~C~~~g~-p~p~i~W~k~~~~~~~~~~~-~~-~~~-~~l~i~~------l--~d~g~Y~c~a~n~~g 180 (904)
++|.|.+.|. |.+.|+|+++ |..+..... .. ..+ +.+.+.. . .++..|+|.|.+...
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~-g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l 70 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKG-DQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESL 70 (83)
T ss_pred EEEEEEecCccCCCEeEEEEC-CEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECccc
Confidence 6899999985 9999999999 666654322 11 122 3443322 2 377999999988654
No 179
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=96.96 E-value=0.0039 Score=51.27 Aligned_cols=69 Identities=17% Similarity=0.132 Sum_probs=46.6
Q ss_pred CeEEcCCCCceEEecCCCeEEEEEEccCCCCeEEEeeCCccccCCC---Cc-eeecceEEEEeee--cCCeEEEEEEEe
Q psy8771 105 PQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPD---DK-LPVGRNVLTLDRV--TESENYTCIAAS 177 (904)
Q Consensus 105 P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~k~~~~~~~~~---~~-~~~~~~~l~i~~l--~d~g~Y~c~a~n 177 (904)
|.|...|. ..+..|++++|.|.... +.-.+.|+|+ +...... .. .......+.|..+ +|+|.|.|....
T Consensus 2 P~l~a~p~--~vV~~G~~VTL~C~~~~-~~~~f~l~k~-g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~ 76 (94)
T cd05711 2 PFLSAHPS--PVVPSGENVTLQCHSDI-RFDRFILYKE-GRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSY 76 (94)
T ss_pred CEEEecCC--CccCCCCeEEEEEecCC-CCCEEEEEEC-CCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence 55555554 77889999999998765 4567899998 4322110 00 0112347888888 699999998753
No 180
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=96.92 E-value=0.0095 Score=46.59 Aligned_cols=74 Identities=20% Similarity=0.237 Sum_probs=51.9
Q ss_pred eEEecCCCeEEEEEEccCC--CCeEEEeeCCccccCCCCceeecceEEEEeee--cCCeEEEEEEEecCcceEEEEEEEE
Q psy8771 115 LEVMLDSPLNLSCVAVGSP--MPFVKWRKGQNIELTPDDKLPVGRNVLTLDRV--TESENYTCIAASVLGVIETSTIVKV 190 (904)
Q Consensus 115 ~~~~~g~~~~l~C~~~g~p--~p~i~W~k~~~~~~~~~~~~~~~~~~l~i~~l--~d~g~Y~c~a~n~~g~~~~~~~l~v 190 (904)
-.+..|++++|.|.....+ .+.|+|...++... .....+..+|.+..| .|+|..+|.+....-+.++...+.|
T Consensus 9 ~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~---~~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V~V 85 (88)
T cd07694 9 DHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSK---QILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDIKV 85 (88)
T ss_pred CeeecCCcEEEEEecCCCCCCCccEEEeCCCCccc---eeccCCccEEEeceeCcccCCEEEEEEEECceEEEEEeeEEE
Confidence 4567899999999996544 45999998744322 111236778999999 6999999999765444555555555
Q ss_pred E
Q psy8771 191 Q 191 (904)
Q Consensus 191 ~ 191 (904)
.
T Consensus 86 l 86 (88)
T cd07694 86 L 86 (88)
T ss_pred E
Confidence 4
No 181
>KOG0613|consensus
Probab=96.91 E-value=0.099 Score=61.50 Aligned_cols=346 Identities=14% Similarity=0.053 Sum_probs=166.6
Q ss_pred cCCeEEEEEEEEeeCCCCCCCCCC---ceeeecCCCCCCCCCCeEEEecCCceEEEEecCCCCCCC-ceeeEEEEEEeCC
Q psy8771 448 YPNTLYYIWLAAQSPRGEGATTPP---IPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPNG-QITGYKVYYTQDQ 523 (904)
Q Consensus 448 ~p~~~Y~~~v~a~~~~g~~~~s~~---~~~~t~~~~p~~~p~~l~v~~~~~~~~~l~W~~p~~~~~-~i~~Y~v~~~~~~ 523 (904)
.++..|.+.+...-..|.+.+... ..+......+...+.++.+.....+.+.+.|..+...-+ .+..|...-....
T Consensus 299 ~~~~q~~~~v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~ 378 (1205)
T KOG0613|consen 299 RQGCQDRFKVTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSE 378 (1205)
T ss_pred cCCcccceeeeEEeeccccccCchhhhhhccCCccccccccccceeccccCcceeecccccCCcCCchheeecccccccc
Confidence 344556666666665665443332 333334445566677888888888899999987533222 2344443332222
Q ss_pred CCCCcceEEEee--cCceEEEEcCCCCCCeEEEEEEEEeCCCCCCCCCcEEEecCC-C-C-------------CCCCCC-
Q psy8771 524 SLPMSAWETQVV--DNNQLTTISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQ-G-V-------------PSQPRD- 585 (904)
Q Consensus 524 ~~~~~~~~~~~~--~~~~~~~~~~L~p~t~Y~~~V~a~~~~g~~~~S~~~~~~t~~-~-~-------------p~~p~~- 585 (904)
+ ..|..... .....+.+.++.++..|..++.+.|..|.........+.-.. + . +.-+..
T Consensus 379 ~---~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~~~~gt~~~~~kk~~~~t~~L~~~~~i 455 (1205)
T KOG0613|consen 379 S---LGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSEEMPGTQPPKFKKDVSTTDLLTVKDEI 455 (1205)
T ss_pred c---ccccccccccccCcchhhhhcCcccccccccceeccCCcccccchhhcccccCCCCCccccccccccccccCCccc
Confidence 1 22222222 334457888999999999999999998865433322221110 0 0 000011
Q ss_pred -ceEEecCCC--eEEEEEeCCCCCC-CC--------ceEEEEEecc----------------CCCCCcceEEEeeccceE
Q psy8771 586 -LRAVDIQET--AVTLAWSKPTHSG-EN--------IISYELYWND----------------TYAKPRDLRAVDIQETAV 637 (904)
Q Consensus 586 -~~~~~~~~~--~~~l~W~~~~~~~-~~--------~~~y~v~~~~----------------~~~~p~~l~~~~~~~~~~ 637 (904)
+++...+.. ...++|.....+- +. +..--+.... .+.+..+..-.......-
T Consensus 456 ~~~~~~~s~~~~~~~~tt~~~~~~~s~~s~~l~r~~~tslLlk~~~~~~~A~~~~a~~~~~~k~~~~~~~~l~~~~s~a~ 535 (1205)
T KOG0613|consen 456 TVRTPDSSTSMPMTTVTTIKDGLPLSDRSVTLTRDVLTSLLLKVASLSDGAQYTRALRTLQGKPVPSLDRKLPAAKSSAP 535 (1205)
T ss_pred ccccCCCCccccceeEeeccCCcccccccccccccchhhheeeccCCCccchhhhhhhccCCCCCCcccccccccccCCc
Confidence 111111111 1223333221110 00 0000000000 111222222222233333
Q ss_pred EEeccCCCCCCCceeeEEEEEEeCC-------------ccccceEEecccceEEEeCCCCCcEEEEEEEEEcCCCCCCCC
Q psy8771 638 TLAWSKPTHSGENIISYELYWNDTY-------------AKAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATT 704 (904)
Q Consensus 638 ~l~w~~~~~~~~~~~~y~v~~~~~~-------------~~~~~~~~~~~~~~~~l~~L~p~t~Y~v~V~a~~~~G~~~~s 704 (904)
...|+.+...+.+...|...+.... +......... .+...+.++.|++.|.+.+.+.+..|++.++
T Consensus 536 ~~~~~~~~~~g~p~l~~~~~~~E~~~vs~~~~~a~~qlg~~~~~~~r~-gtt~t~~~~~p~~~~~~t~~~k~~~gE~~ps 614 (1205)
T KOG0613|consen 536 KPIHTQENQPGTPTLEWEPKPAEASKVSLHYASATRQLGVWRVPESRP-GTTETIGSILPGHEYHVTIKAKNELGESRPS 614 (1205)
T ss_pred ccccccccCCCCcccccCCCcccccccchhhhhhhhhccCCcccccCC-CcccccccccccccceeehhhhhcccccCCC
Confidence 3455555545555555544444332 1111111111 2778889999999999999999999998877
Q ss_pred CCeeEEecCCCCC---CCCCCcEEEecCCCEEEEEecCCCCCCCCccEEEEEEEEEEccCCCCccEEEEec-CcceEEec
Q psy8771 705 PPIPVRTKQYVPG---APPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLK-NQTSFVLD 780 (904)
Q Consensus 705 ~~~~~~t~~~~p~---~~P~~l~~~~~~~~~v~l~W~~~~~~~~~g~~~~Y~v~~~~~~~~~~~~~~~~~~-~~~~~~i~ 780 (904)
. -..+....-|. ..|..-........+..++|.....+ .-.....|.......++.-. +....-. ..-...+.
T Consensus 615 ~-~~~t~k~~D~~q~~~~~~~~~~~ks~~~~~k~s~l~~l~k-~~~~a~~~~~~~~~vd~~~K-~kv~~~~~e~d~~i~~ 691 (1205)
T KOG0613|consen 615 S-KSTTLKWQDPSQLKRRPVSEPSYKSPDSSQKPSKLVGLSK-MDLPANLESQVKPTVVSSPK-KKVKKKKQEKDLEILA 691 (1205)
T ss_pred C-CCccccccccccccccccCCccccccccccchhcccchhh-ccccccceeeeeccccCCcc-ccccccccccchhhhc
Confidence 3 11111111111 11122222333556788889887532 22234444444444332211 1111111 33445566
Q ss_pred CCCCCceEEEEEEEeeCCCC
Q psy8771 781 ELKKWTEYRIWVLAGTSIGD 800 (904)
Q Consensus 781 ~L~p~t~Y~~~V~a~~~~g~ 800 (904)
.+.+.+.|.+.+.+.+..+.
T Consensus 692 ~~~t~si~~p~k~~e~~~~~ 711 (1205)
T KOG0613|consen 692 KKGTTSIVEPEKPPESEAAT 711 (1205)
T ss_pred cCCCCcccccccCCccccCC
Confidence 67777778777777776655
No 182
>KOG3515|consensus
Probab=96.89 E-value=0.2 Score=56.41 Aligned_cols=60 Identities=15% Similarity=0.192 Sum_probs=46.7
Q ss_pred EEcCCCCCCeEEEEEEEEeCCCCCCCCCcEEEecCCCCCCCCCCceEEecCCCeEEEEEeCCC
Q psy8771 542 TISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLAWSKPT 604 (904)
Q Consensus 542 ~~~~L~p~t~Y~~~V~a~~~~g~~~~S~~~~~~t~~~~p~~p~~~~~~~~~~~~~~l~W~~~~ 604 (904)
.+-+..++..|.+.+.+.|..|.+..+..+.--+ .+..|.+|.+.......+.|.|.+..
T Consensus 657 ~~~~~~~~~~y~~~c~t~n~lg~~~v~~~~~~~t---~~~~~~n~~~~~~~~~~i~l~~~p~f 716 (741)
T KOG3515|consen 657 WILNHIDGSDYENGCTTQNLLGSDHVSGAIHSGT---ASVGPINLTYDNLTYSTISLEWMPGF 716 (741)
T ss_pred cccCCcchhhhcceeeecccCCCccccceecCCc---CCCCccceEeeeeeeeeeceeeeecc
Confidence 3445567889999999999999877666544433 45678899999999999999999875
No 183
>KOG4228|consensus
Probab=96.76 E-value=0.0098 Score=68.37 Aligned_cols=277 Identities=19% Similarity=0.202 Sum_probs=167.8
Q ss_pred CCCCeEEEecCCceEEEEecCCCCCCCceeeEEEEEEeCCCCCCcceEEEeecCceEEEEcCCCCCCeEEEEEEEEeCCC
Q psy8771 484 APRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVG 563 (904)
Q Consensus 484 ~p~~l~v~~~~~~~~~l~W~~p~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~~V~a~~~~g 563 (904)
.|..+.++.....+....|..... ....|.+.++...+. ...........+....+.+...|.+ .++|..|
T Consensus 27 ~~~~~~vt~~~~~~~~~~~~~~~t---~~~~y~v~~~~~~s~----~~~~~~~~~~~~s~~~~~~~~~~~~--~evnt~~ 97 (1087)
T KOG4228|consen 27 GPSTPNVTGSTATSWVQAELLGST---WPNYYQVIFKALSSG----YGYIDVDLTTRLSYPCLSPPSFLEL--VEVNTIG 97 (1087)
T ss_pred CCCCcccccccccceeehhhccCC---ChhhhheeeeEeccC----cceeeccceeecccCCCCCcchhhh--hhccccc
Confidence 344566677777889999988653 456777777766543 2233334444567777888888888 7788877
Q ss_pred CCCCCCcEEEecCCCCC-CCCCCceEEecCCCeEEEEEeCCCCCCCCceEEEEEeccCCCCCcceEEEeeccceEEEecc
Q psy8771 564 PGPLSAPVLVKTQQGVP-SQPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKPRDLRAVDIQETAVTLAWS 642 (904)
Q Consensus 564 ~~~~S~~~~~~t~~~~p-~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~p~~l~~~~~~~~~~~l~w~ 642 (904)
.+..+.+..-++....+ ..+....+.........++|.....
T Consensus 98 ~a~~~~~~~~rt~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~------------------------------------- 140 (1087)
T KOG4228|consen 98 RAPFQCPVAPRTGEQATLSLQRDVQALMLSAATAHVNWRRFSA------------------------------------- 140 (1087)
T ss_pred ccccccccCCccccccccccccchhhhhhhhhhhccCcccccc-------------------------------------
Confidence 77777665554443332 2233333333334444555554421
Q ss_pred CCCCCCCceeeEEEEEEeCCccccceEEecccceEEEeCCCCCcEEEEEEEEEcCCCCCCCCCCeeEEecCCCCCCCCCC
Q psy8771 643 KPTHSGENIISYELYWNDTYAKAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQN 722 (904)
Q Consensus 643 ~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~v~V~a~~~~G~~~~s~~~~~~t~~~~p~~~P~~ 722 (904)
..+ +.+....|.++++..+.+.|....|..++
T Consensus 141 ----~~~------------------------------------------~~~~~~~~~~~~~t~i~i~~~~~~p~~~~-- 172 (1087)
T KOG4228|consen 141 ----TVG------------------------------------------PLAIASPGLGPPSTYIQITTNANSPIQPG-- 172 (1087)
T ss_pred ----ccc------------------------------------------ccccCCcccCCCCceEEEeccCCCCCCCC--
Confidence 000 66777777777777788888888777654
Q ss_pred cEEEecCCCEEEEEecCCCCCCCCccEEEEEEEEEEccCCCCccEEEEecCcceEEecCCCCCceEEEEEEEeeCCCCCC
Q psy8771 723 VSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDGP 802 (904)
Q Consensus 723 l~~~~~~~~~v~l~W~~~~~~~~~g~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~g~ 802 (904)
.......++++|.++. ...+..|.+.+...+.... ..............+|.+-..|.++..+....+.+.
T Consensus 173 ---~~~~~~~it~~w~~~~----~~~~~~ykl~~~~~d~~~~--~~v~~~~~~~~~t~~~~~~~~~~~~~ae~~~~~~~~ 243 (1087)
T KOG4228|consen 173 ---EEEEYTTITGSWSPPH----AVSLDTYKLLHLDPDTGYE--ISVTLTPPGSGGTGDLGPPSISRFKCAEPDRGPLGS 243 (1087)
T ss_pred ---cceEEEEEEecCCCCC----cccchhhhhhhcCCcccce--eeeeccCCCCCcccCCCCcccccccccCccccccCC
Confidence 4456789999999884 4568889998887743221 112222455555677888889999988888777776
Q ss_pred CCCcEEeecCCCCCCC--------CccCCcceeeCCCCCceeeeeeeecCCceEEecCCCeeEEEEcCCCCCcEEEEEEE
Q psy8771 803 SSYPITIRTHEDDPSE--------VCPTQNDFRKNKKTNGSNFKGGYLNDPMRFDVSDGGALELNVTGLQPDTIYTIQVA 874 (904)
Q Consensus 803 ~s~~~~~~t~~~~P~~--------v~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~ 874 (904)
....+.+++...+-.. ....-.+|..+..... .....+... ..+.+|.|.+.|.+.|.
T Consensus 244 ~~a~i~~r~~~s~~~~~~~~~~~~~~~~~~t~~~~~~~~S-------------~~~v~~~~~-~~i~~~~p~~~~~~~it 309 (1087)
T KOG4228|consen 244 STAEIEARQLQSVSKKNFETKHVFKNLVPGTWESFSNYAS-------------TTNVSGRSF-PLIVNLNPETEYSFVIT 309 (1087)
T ss_pred CCcceEEEehhhhhccccccceeecccCCceeeeeecccc-------------cCcccCCCc-ceeccCCCcccccceee
Confidence 6667777765542111 0001115653322211 111233344 66777777777777777
Q ss_pred EEe
Q psy8771 875 ALT 877 (904)
Q Consensus 875 a~n 877 (904)
...
T Consensus 310 ~~~ 312 (1087)
T KOG4228|consen 310 VRL 312 (1087)
T ss_pred ccc
Confidence 765
No 184
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=96.75 E-value=0.0077 Score=47.99 Aligned_cols=57 Identities=19% Similarity=0.350 Sum_probs=37.0
Q ss_pred eEEEEEEcc-CCCCeEEEeeCCccccCCCCcee---ecceE------EEEeee--cCCeEEEEEEEecCc
Q psy8771 123 LNLSCVAVG-SPMPFVKWRKGQNIELTPDDKLP---VGRNV------LTLDRV--TESENYTCIAASVLG 180 (904)
Q Consensus 123 ~~l~C~~~g-~p~p~i~W~k~~~~~~~~~~~~~---~~~~~------l~i~~l--~d~g~Y~c~a~n~~g 180 (904)
++|.|.+.| .|...|+|+|+ |..+....... ..+++ |.|.-- .++..|+|.+.+..-
T Consensus 2 ~~LtC~a~gf~P~~~itW~kn-g~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l 70 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKN-DKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESL 70 (83)
T ss_pred EEEEEEeCCccCCCEEEEEEC-CEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhc
Confidence 689999998 67889999999 66665433221 12233 333221 367899999987543
No 185
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=96.69 E-value=0.0098 Score=49.59 Aligned_cols=65 Identities=14% Similarity=0.192 Sum_probs=45.8
Q ss_pred eEEecCCCeEEEEEEcc-CCCCeEEEeeCCccc----c--------CCCCceee------cceEEEEeee--cCCeEEEE
Q psy8771 115 LEVMLDSPLNLSCVAVG-SPMPFVKWRKGQNIE----L--------TPDDKLPV------GRNVLTLDRV--TESENYTC 173 (904)
Q Consensus 115 ~~~~~g~~~~l~C~~~g-~p~p~i~W~k~~~~~----~--------~~~~~~~~------~~~~l~i~~l--~d~g~Y~c 173 (904)
+.+.+|++++|.|.... .....+.|+|..... + ....|+.+ ...+|.|.++ +|+|.|.|
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 81 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC 81 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence 67889999999999876 345678999853211 1 11234433 2347999999 79999999
Q ss_pred EEEecC
Q psy8771 174 IAASVL 179 (904)
Q Consensus 174 ~a~n~~ 179 (904)
.+....
T Consensus 82 ~~~~~~ 87 (98)
T cd05716 82 GVGDDG 87 (98)
T ss_pred EcccCC
Confidence 887643
No 186
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=96.62 E-value=0.011 Score=48.65 Aligned_cols=59 Identities=29% Similarity=0.458 Sum_probs=38.1
Q ss_pred CCCeEEEEEEccC-CCC-eEEEeeCCccccCCCC---c-eeecceEEEEeee-----cCCeEEEEEEEecC
Q psy8771 120 DSPLNLSCVAVGS-PMP-FVKWRKGQNIELTPDD---K-LPVGRNVLTLDRV-----TESENYTCIAASVL 179 (904)
Q Consensus 120 g~~~~l~C~~~g~-p~p-~i~W~k~~~~~~~~~~---~-~~~~~~~l~i~~l-----~d~g~Y~c~a~n~~ 179 (904)
|+.++|.|.+.|. |.. .|+|.|+ +..+.... . ....++.+.+... .++..|+|.+....
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~-g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~ 83 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRD-GEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSG 83 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEEC-CEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCC
Confidence 7889999999995 654 8999999 53222211 1 2224455444322 48899999987643
No 187
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=96.57 E-value=0.034 Score=49.91 Aligned_cols=33 Identities=18% Similarity=0.270 Sum_probs=29.7
Q ss_pred EEEEeee--cCCeEEEEEEEecCcceEEEEEEEEE
Q psy8771 159 VLTLDRV--TESENYTCIAASVLGVIETSTIVKVQ 191 (904)
Q Consensus 159 ~l~i~~l--~d~g~Y~c~a~n~~g~~~~~~~l~v~ 191 (904)
+|.|.++ +|+|.|.|.+.+..|..+..+.|.|.
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~ 36 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVS 36 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEe
Confidence 6899999 69999999999988888888888887
No 188
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=96.54 E-value=0.013 Score=50.90 Aligned_cols=66 Identities=14% Similarity=0.185 Sum_probs=44.7
Q ss_pred CCCceEEecCCCeEEEEEEccCC------CCeEEEeeCCccc-----c---C--------CCCceee------cceEEEE
Q psy8771 111 PPALLEVMLDSPLNLSCVAVGSP------MPFVKWRKGQNIE-----L---T--------PDDKLPV------GRNVLTL 162 (904)
Q Consensus 111 ~~~~~~~~~g~~~~l~C~~~g~p------~p~i~W~k~~~~~-----~---~--------~~~~~~~------~~~~l~i 162 (904)
|.. +.+.+|+.++|.|...... ...+.|+|..... . . ...|+.. ++.+|.|
T Consensus 6 P~~-v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I 84 (119)
T cd05712 6 PKS-VSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLI 84 (119)
T ss_pred CCE-EEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEE
Confidence 344 8999999999999876332 3468999852211 0 0 0124432 2347999
Q ss_pred eee--cCCeEEEEEEEe
Q psy8771 163 DRV--TESENYTCIAAS 177 (904)
Q Consensus 163 ~~l--~d~g~Y~c~a~n 177 (904)
.++ +|+|.|.|++..
T Consensus 85 ~~l~~~Dsg~Y~C~~~~ 101 (119)
T cd05712 85 SDAQPEDSGKYFFRVEL 101 (119)
T ss_pred ccCChhhCeEEEEEEEc
Confidence 999 699999998865
No 189
>KOG4806|consensus
Probab=96.52 E-value=0.16 Score=50.14 Aligned_cols=258 Identities=16% Similarity=0.196 Sum_probs=125.6
Q ss_pred ccCCCCceeeeeccCCeEEEEEEEEeeCCCC-CCCCCCceeeecCCCCCCCCCCe--------EEEecCCceEEEEecCC
Q psy8771 435 QYGKTPGFGEQALYPNTLYYIWLAAQSPRGE-GATTPPIPVRTKQYEPGTAPRDV--------QVRPLSSSTMVIQWDEP 505 (904)
Q Consensus 435 ~~~~~~~~~~~~L~p~~~Y~~~v~a~~~~g~-~~~s~~~~~~t~~~~p~~~p~~l--------~v~~~~~~~~~l~W~~p 505 (904)
..+....+++..|.|.+.|.|.|...+.... +..-......|.+.+. .+|..| .+.. ....=.++...|
T Consensus 165 Cig~~n~~~v~~L~pdt~Y~~dvFvv~~~r~~sTay~~t~~~t~e~~k-Qk~~~Lk~g~l~qv~v~~-~kG~kf~~f~~p 242 (454)
T KOG4806|consen 165 CIGNKNIFTVSDLKPDTQYYFDVFVVNINRNMSTAYVGTFARTKEEAK-QKTVELKDGKLTQVFVKG-RKGAKFLSFKVP 242 (454)
T ss_pred EcCCccEEEhhhcCCCceEEEEEEEEecCCCcceeeeeeehhhhhhhc-CCceeeccCcEEEEEecc-cccceEEEecCc
Confidence 3456667899999999999999999885432 2221122233333221 111111 1111 112223444544
Q ss_pred CC--CCCceeeEEEEEEeCCCCCC----cceE---EEeecCceEEEEcCCCCCCeEEEEEEEEeCCCCCCCCCcEEEe--
Q psy8771 506 ET--PNGQITGYKVYYTQDQSLPM----SAWE---TQVVDNNQLTTISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVK-- 574 (904)
Q Consensus 506 ~~--~~~~i~~Y~v~~~~~~~~~~----~~~~---~~~~~~~~~~~~~~L~p~t~Y~~~V~a~~~~g~~~~S~~~~~~-- 574 (904)
+. ..+......|.-+. +.... ..|. .....+.+.+.-.++.++..|.++++..|.+..- ....+...
T Consensus 243 q~~~~l~qp~mhllh~C~-g~vrinl~R~rkel~kS~af~g~~~~~Qfvv~~~~~~~~rf~~~ndde~~-~~v~V~aSt~ 320 (454)
T KOG4806|consen 243 QTTRSLGQPFMHLLHSCL-GEVRINLLRQRKELGKSEAFYGPTYIRQFVVLPGERYLMRFEPSNDDEAL-QKVMVAASTE 320 (454)
T ss_pred chhhhcCCceeeeeeccc-ccceeehhhchhhhcccccccCceeeeEEEecCCCceEEEEEecCCchhh-heeEeeeecc
Confidence 32 12211112221111 11000 0000 1111233334455778999999999999876431 11111111
Q ss_pred -cCCCCCCCCCCceEEecC--CCeEEEEEeCCCCCCCCceEEEEEeccCCCCCcceEEEeeccceEEEeccCCCCCCCce
Q psy8771 575 -TQQGVPSQPRDLRAVDIQ--ETAVTLAWSKPTHSGENIISYELYWNDTYAKPRDLRAVDIQETAVTLAWSKPTHSGENI 651 (904)
Q Consensus 575 -t~~~~p~~p~~~~~~~~~--~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~p~~l~~~~~~~~~~~l~w~~~~~~~~~~ 651 (904)
|....|.-|.+..+..+. -++.++.|....+ .-..|.|+..+.+. ...+.+ ..+....-.. ....
T Consensus 321 ~t~~~~P~LP~dTtVk~v~r~CSsAtIaW~gs~d---~~~kyCIy~~~~~~-~e~~v~---~~~N~C~g~~-----~~~~ 388 (454)
T KOG4806|consen 321 ATFRDLPELPQDTTVKNVRRRCSSATIAWNGSPD---EELKYCIYVFNLPQ-RERSVV---DFTNYCMGFV-----PKRV 388 (454)
T ss_pred cccCcCCCCCCCceEeeeccccchheeeeccCcc---hheeEEEEEecccc-hhhhhh---hhhccccCcc-----ccce
Confidence 233456778887777664 4578999987754 35567777655443 111110 0000000000 1122
Q ss_pred eeEEEE-EEeCCccccceEEecccceEEEeCCCCCcEEEEEEEEEcCCCCCCCCCCeeEEe
Q psy8771 652 ISYELY-WNDTYAKAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRT 711 (904)
Q Consensus 652 ~~y~v~-~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~v~V~a~~~~G~~~~s~~~~~~t 711 (904)
..|... |....+. .....+..+-+|.||.||..|.+.|.|.-..|..-+-..+.+.|
T Consensus 389 s~~v~c~y~hs~~~---q~~~~~i~teTI~gL~PgssYlldv~a~~~~g~~lpyqa~~v~t 446 (454)
T KOG4806|consen 389 SQYVYCEYMHSRER---QQSPDNIETETILGLMPGSSYLLDVTANLSMGKPLPYQALTVHT 446 (454)
T ss_pred eEEEeEEEecChhh---hcchhhhhhhhhcccccCceEEEEEEEcccCCccccceeEEEEe
Confidence 333333 2222111 11122334667899999999999999988876654333333433
No 190
>KOG4152|consensus
Probab=96.50 E-value=0.014 Score=60.41 Aligned_cols=124 Identities=19% Similarity=0.323 Sum_probs=84.2
Q ss_pred eeeeccCCeEEEEEEEEeeCCCCCCCCCCceeeecCCCCCCCCCCeEEEecCCceEEEEecCCCCCC-CceeeEEEEEEe
Q psy8771 443 GEQALYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPN-GQITGYKVYYTQ 521 (904)
Q Consensus 443 ~~~~L~p~~~Y~~~v~a~~~~g~~~~s~~~~~~t~~~~p~~~p~~l~v~~~~~~~~~l~W~~p~~~~-~~i~~Y~v~~~~ 521 (904)
.-..|.+|+.|+|+|.|.|+.|.++++....+.|-...-|.+|..+++. .+-..+.+.|++|...+ |.|..|..+..-
T Consensus 650 ~k~~lv~Gq~yrfrV~aIng~G~gp~s~i~~~kTc~pG~P~apS~~ri~-k~~eGi~l~weppt~p~sg~Iieys~ylAi 728 (830)
T KOG4152|consen 650 VKTSLVTGQAYRFRVTAINGKGPGPASTILKLKTCAPGKPTAPSGARIK-KTIEGISLVWEPPTKPGSGTIIEYSPYLAI 728 (830)
T ss_pred cccccccccceeeeeeeeeccCCCchhhheeeeeccCCCCCCccccccc-ccccceeecccCCCCCCCcceEEeehhhHh
Confidence 4568899999999999999999999999999888766666778777654 34468999999987664 577777765432
Q ss_pred CC-----CCCCcceEEEeecCceEE---------EEcCCCCCCeEEEEEEEEeCCCCCCC
Q psy8771 522 DQ-----SLPMSAWETQVVDNNQLT---------TISDLTPHTIYTIRVQAFTSVGPGPL 567 (904)
Q Consensus 522 ~~-----~~~~~~~~~~~~~~~~~~---------~~~~L~p~t~Y~~~V~a~~~~g~~~~ 567 (904)
.. ......+.....+-.+.+ .+.+...+..-.|+|.|.|..|.|+.
T Consensus 729 ~tq~~~~~~sql~fmr~ycg~~t~c~vt~g~l~tA~~d~t~~paivfri~aknekGyGpa 788 (830)
T KOG4152|consen 729 ITQAGATGVSQLPFMRSYCGIITTCVVTSGKLITAVPDITTGPAIVFRIVAKNEKGYGPA 788 (830)
T ss_pred hhhhhccCccccceeeeecccceeeEEecccceeeccccccCcceEEEEEecCCCCCCcc
Confidence 11 111111222222222222 23344556778899999999887754
No 191
>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....
Probab=96.50 E-value=0.0067 Score=51.48 Aligned_cols=88 Identities=26% Similarity=0.365 Sum_probs=56.5
Q ss_pred CCCCCeEEEecCCceEEEEecCCC-----CCCC----c---eeeEEEEEEeCCCCCCcceEEEeecCceEEEEcCCCCCC
Q psy8771 483 TAPRDVQVRPLSSSTMVIQWDEPE-----TPNG----Q---ITGYKVYYTQDQSLPMSAWETQVVDNNQLTTISDLTPHT 550 (904)
Q Consensus 483 ~~p~~l~v~~~~~~~~~l~W~~p~-----~~~~----~---i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t 550 (904)
+||. +.+ ....++|.|.+.+|. .... + ...|.|.++..++. .-..........+.|.+|.|++
T Consensus 4 gPP~-v~v-~~~~~~l~V~i~~P~~~~~~~~~~~~l~~~~~~~~Y~v~~~~~~~~---~~~~~~~~~~~~~~l~~L~p~t 78 (106)
T PF09294_consen 4 GPPS-VNV-SSCGGSLHVTIKPPMTPLRAGGKNSSLRDIYPSLSYNVSYWKNGSN---EKKKEIETKNSSVTLSDLKPGT 78 (106)
T ss_dssp -SSE-EEE-EEETTEEEEEEEESEEEEECSSSEEEHHHHHGG-EEEEEEEETTTS---CEEEEEESSSEEEEEES--TTS
T ss_pred cCCE-EEE-EECCCEEEEEEECCCcccccCCCCCcHHHhCCCeEEEEEEEeCCCc---cceEEEeecCCEEEEeCCCCCC
Confidence 4565 777 456689999999986 1111 1 25699999988754 1223344666778999999999
Q ss_pred eEEEEEEEEeCC--CCCCCCCcEEEec
Q psy8771 551 IYTIRVQAFTSV--GPGPLSAPVLVKT 575 (904)
Q Consensus 551 ~Y~~~V~a~~~~--g~~~~S~~~~~~t 575 (904)
.|.|+|++.... ..|.+|.+..+.|
T Consensus 79 ~YCv~V~~~~~~~~~~s~~S~~~C~~t 105 (106)
T PF09294_consen 79 NYCVSVQAFSPSQNKNSQPSEPQCITT 105 (106)
T ss_dssp EEEEEEEEEECSSTEEEEEBSEEEEE-
T ss_pred CEEEEEEEEeccCCCcCCCCCCEeEeC
Confidence 999999994332 2356677666554
No 192
>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....
Probab=96.49 E-value=0.013 Score=49.77 Aligned_cols=88 Identities=24% Similarity=0.377 Sum_probs=57.0
Q ss_pred CCCCcEEEecCCCEEEEEecCCCCC----CCCc------cEEEEEEEEEEccCCCCccEEEEec-CcceEEecCCCCCce
Q psy8771 719 PPQNVSCEPLSSTSIRISWEPPPVE----RSNG------HIVYYKLQFVETGRSDSEASIVTLK-NQTSFVLDELKKWTE 787 (904)
Q Consensus 719 ~P~~l~~~~~~~~~v~l~W~~~~~~----~~~g------~~~~Y~v~~~~~~~~~~~~~~~~~~-~~~~~~i~~L~p~t~ 787 (904)
||. +.+ ....++|.|.+..|... ..+. .-..|.|.|+..++.. ...... ....+.|.+|.|++.
T Consensus 5 PP~-v~v-~~~~~~l~V~i~~P~~~~~~~~~~~~l~~~~~~~~Y~v~~~~~~~~~---~~~~~~~~~~~~~l~~L~p~t~ 79 (106)
T PF09294_consen 5 PPS-VNV-SSCGGSLHVTIKPPMTPLRAGGKNSSLRDIYPSLSYNVSYWKNGSNE---KKKEIETKNSSVTLSDLKPGTN 79 (106)
T ss_dssp SSE-EEE-EEETTEEEEEEEESEEEEECSSSEEEHHHHHGG-EEEEEEEETTTSC---EEEEEESSSEEEEEES--TTSE
T ss_pred CCE-EEE-EECCCEEEEEEECCCcccccCCCCCcHHHhCCCeEEEEEEEeCCCcc---ceEEEeecCCEEEEeCCCCCCC
Confidence 455 777 45789999999998410 0110 1257999999988651 223333 667779999999999
Q ss_pred EEEEEEEeeC--CCCCCCCCcEEeec
Q psy8771 788 YRIWVLAGTS--IGDGPSSYPITIRT 811 (904)
Q Consensus 788 Y~~~V~a~~~--~g~g~~s~~~~~~t 811 (904)
|-|+|+|... ...|.+|.+..+.|
T Consensus 80 YCv~V~~~~~~~~~~s~~S~~~C~~t 105 (106)
T PF09294_consen 80 YCVSVQAFSPSQNKNSQPSEPQCITT 105 (106)
T ss_dssp EEEEEEEEECSSTEEEEEBSEEEEE-
T ss_pred EEEEEEEEeccCCCcCCCCCCEeEeC
Confidence 9999999332 23567777666655
No 193
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=96.41 E-value=0.013 Score=49.62 Aligned_cols=63 Identities=24% Similarity=0.508 Sum_probs=42.6
Q ss_pred eEEecCCCeEEEEEEccCC-CCeEEEeeCCccc----c------C-----------CCCceee------cceEEEEeee-
Q psy8771 115 LEVMLDSPLNLSCVAVGSP-MPFVKWRKGQNIE----L------T-----------PDDKLPV------GRNVLTLDRV- 165 (904)
Q Consensus 115 ~~~~~g~~~~l~C~~~g~p-~p~i~W~k~~~~~----~------~-----------~~~~~~~------~~~~l~i~~l- 165 (904)
+.+.+|++++|.|.+.+.. ...+.|++-.... + . ...|+.. ....|.|.++
T Consensus 1 ~~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~ 80 (107)
T cd07700 1 ILVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVK 80 (107)
T ss_pred CEEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCC
Confidence 3578999999999998754 4579999842220 0 0 0123432 1236999999
Q ss_pred -cCCeEEEEEEEe
Q psy8771 166 -TESENYTCIAAS 177 (904)
Q Consensus 166 -~d~g~Y~c~a~n 177 (904)
+|+|.|.|...+
T Consensus 81 ~~Dsg~YyCa~~~ 93 (107)
T cd07700 81 PEDSGTYFCMTVG 93 (107)
T ss_pred HHHCEEEEEeEcC
Confidence 699999998753
No 194
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=96.27 E-value=6.5 Score=51.56 Aligned_cols=264 Identities=11% Similarity=0.077 Sum_probs=127.8
Q ss_pred ccceEEEEeeeccCCeeeeeeeeccCCCCCCCCeEEcCCCCceEEecCCCeEEEEEEccCCCCeEEEeeCCccccCCCCc
Q psy8771 73 RSHARLAAQSVLRRGRLAHAVRQVADPVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDK 152 (904)
Q Consensus 73 ~~~~~~~~~~~~~~g~~~~~~~~v~~~~~~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~k~~~~~~~~~~~ 152 (904)
.|.+.+.+.+.+ .+......+.+.++... +.....+ ..+..|+.++|++.....+...+.|..+++....
T Consensus 1841 ~ytV~L~AsN~v-s~~~~s~~~~VQe~I~~----L~L~as~-~~~~~n~~v~fsa~l~~GS~Vtf~w~fGdgs~~~---- 1910 (2740)
T TIGR00864 1841 TFAIRLNASNAV-SGKSASREFFAEEPIFG----LELKASK-KIAAIGEKVEFQILLAAGSAVNFRLQIGGAAPEV---- 1910 (2740)
T ss_pred EEEEEEEEEccc-CcceeeeeEEEEEecce----EEEeccc-ccccCCCEEEEEEEecCCCceEEEEEeCCCCcee----
Confidence 444454554444 44444444555443222 2222333 6677999999999888777888899987443221
Q ss_pred eeecceEEEEeee-cCCeEEEE--EEEecCcceEEEEEEEEEeecCCCCCCCCCCcceEEEe--------ecCCeEEEEE
Q psy8771 153 LPVGRNVLTLDRV-TESENYTC--IAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISE--------VTATSVRLDW 221 (904)
Q Consensus 153 ~~~~~~~l~i~~l-~d~g~Y~c--~a~n~~g~~~~~~~l~v~~~~~~~~~~P~~p~~l~~~~--------~~~~sv~l~W 221 (904)
...+ ..+... ..-|.|.+ .|.|..+...+...+.|.+. ...|++.. .....+...+
T Consensus 1911 --~t~~-~t~~HsY~~~G~Y~VtV~A~N~Vs~~~a~~~V~Vle~----------V~gL~I~~~c~~~~~~g~~~tF~A~v 1977 (2740)
T TIGR00864 1911 --LQPG-PRFSHSFPRVDDHMVNLRAKNEVSCAQANLHIEVLEA----------VRGLQIPDCCAAGIATGEEKNFTANV 1977 (2740)
T ss_pred --ecCC-CeEEeecCCCCcEEEEEEEEeccceeeeeEEEEEEEe----------ccceEecCCcccceecCceEEEEEEE
Confidence 1111 123333 56678865 77888888777766666522 12222211 1122233333
Q ss_pred eCCCccceEEEEEEEeCCCCCCeEEeecceeceEEEcCCCCCCeEEEEEEEEcCCCCCCCCCCeEEecCCC--------C
Q psy8771 222 TYPSETLLYYVIQYKPKAANTPYSEISGIITTYYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGET--------E 293 (904)
Q Consensus 222 ~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~s~~s~~~~~~t~~~--------~ 293 (904)
.. +. ...|.+.+......+.......+.+-.++. ..+| .|.++|+|.|..|... ....+..... .
T Consensus 1978 ~~-g~-~V~f~W~f~~~~~~g~~~~~~~G~~vty~~--~~~G-~~~I~v~A~N~l~s~n--~t~~i~VQ~~i~~~~L~~~ 2050 (2740)
T TIGR00864 1978 QR-GK-PVAFAWTFDLHHLHGDSLVIHMGKDVSYTA--EAAG-LLEIQLGAFNALGAEN--ITLQLEAQDALMDAALQAG 2050 (2740)
T ss_pred ec-CC-ceEEEEEeeecccCCCcceeecCCceEEcc--CCCc-EEEEEEEEEcccCccc--ccEEEEEEeheeeEEEeec
Confidence 21 22 223555444221111111122222233444 3455 7999999999988643 2222221110 0
Q ss_pred C----CCCCCceEecc-cCCCeeEEEecCCCCCCceeeEEEEEeeceeEEEEEcCCCCCcEEEEEEEEEcCCCCCCCCCC
Q psy8771 294 P----GTAPRDVQVRP-LSSSTMVIQWDEPETPNGQITAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPP 368 (904)
Q Consensus 294 p----~~~p~~l~~~~-~~~~~v~l~W~~p~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~Y~v~v~a~~~~g~~~~s~~ 368 (904)
| ......+.+.. .+.+.+...|+-.+...... ...........++| .|.++|.|.|..........
T Consensus 2051 p~~~~~n~~v~f~~~~~~~~~~v~~~WDFGDGt~~~~--------T~~~~~sHtY~r~G-~Y~V~V~a~N~VS~~~a~~~ 2121 (2740)
T TIGR00864 2051 PQDCFTNKMAQFEAATSPKPNFMACHWDFGDGSAGQD--------TDEPRAEHEYLHPG-DYRVQVNASNLVSFFSAHAE 2121 (2740)
T ss_pred CcceecCceEEEEEEEccCCCcEEEEEEecCCCCccc--------cCCceeEEEecCCc-cEEEEEEEEcceeeeeeEEE
Confidence 0 01111222211 12445777776543322211 11122333444554 69999999997765544444
Q ss_pred cceeecc
Q psy8771 369 IPVRTKQ 375 (904)
Q Consensus 369 ~~~~t~~ 375 (904)
+.+....
T Consensus 2122 i~V~vl~ 2128 (2740)
T TIGR00864 2122 INVQVLA 2128 (2740)
T ss_pred EEEEEec
Confidence 4444433
No 195
>COG4733 Phage-related protein, tail component [Function unknown]
Probab=96.27 E-value=0.041 Score=61.10 Aligned_cols=145 Identities=16% Similarity=0.126 Sum_probs=80.9
Q ss_pred eeEEEEEEeCCCCCCcceEEEeecCceEEEEcCCCCCCeEEEEEEEEeCCCCCC-C--CCcEEEecCCCCCCCCCCceEE
Q psy8771 513 TGYKVYYTQDQSLPMSAWETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVGPGP-L--SAPVLVKTQQGVPSQPRDLRAV 589 (904)
Q Consensus 513 ~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~~V~a~~~~g~~~-~--S~~~~~~t~~~~p~~p~~~~~~ 589 (904)
..+.+.|....+. .|..........+.+.+|-+| .|.++|+|+|..|... + |....+.-+..+|..+..+...
T Consensus 637 f~~~~a~~a~~~~---~~vta~rt~~~~~~~~gi~~G-qY~i~VrAiN~~g~~~~~a~s~~f~i~g~~~Ppp~~~t~~a~ 712 (952)
T COG4733 637 FLAAWAYEAGWDG---NWITAPRTSAAGFDVEGIPAG-QYAIRVRAINVFEPNSPDATAYEFALNGKKVPPPKAMIYDAV 712 (952)
T ss_pred HHHHHHhhcccCC---ceEecccccccceeecCcCcc-ceEEEEEEeeccCCCCCCcceeEEEecCCCCCCCcccccceE
Confidence 3344444444322 455555567778999999995 8999999999988542 2 2222222233333333333333
Q ss_pred ecCCCeEEEEEeCCCCCCCCceEEEEEeccCCCCCcceEEEeeccceEEEeccCCCCCCCceeeEEEEEEeCCccccceE
Q psy8771 590 DIQETAVTLAWSKPTHSGENIISYELYWNDTYAKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHR 669 (904)
Q Consensus 590 ~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~p~~l~~~~~~~~~~~l~w~~~~~~~~~~~~y~v~~~~~~~~~~~~~ 669 (904)
.+ .-.+.|.|-.|.. .-.+..-.+++....+.+....
T Consensus 713 ~i-t~~~~l~v~dPt~------------------------------------------~~d~~~sei~~s~~~d~~~~Ar 749 (952)
T COG4733 713 II-TLVIRLVVGDPTG------------------------------------------AVDITSTEIRSAVIADGNFQAR 749 (952)
T ss_pred EE-EeeeeEEEecCCc------------------------------------------ceEEeeeeeeeeccccchhHHh
Confidence 32 2245677766631 2223333444444433333222
Q ss_pred Eecccc--eEEEeCCCCCcEEEEEEEEEcCCCCCCCC
Q psy8771 670 RIGLVE--TYSLTGLYPNTLYYIWLAAQSPRGEGATT 704 (904)
Q Consensus 670 ~~~~~~--~~~l~~L~p~t~Y~v~V~a~~~~G~~~~s 704 (904)
..+... ...-.+|+++..|.|+++++|..|...+-
T Consensus 750 ~LG~~~~~~~~~~~i~~g~~~~F~~R~Vn~vG~~~~~ 786 (952)
T COG4733 750 SLGNLNYPGLFSVGIQAGLTFWFRNRNVDLVGNNDKW 786 (952)
T ss_pred hhhccccccccccCcCCCceEEEEeeecccccccccc
Confidence 222222 11226999999999999999999886543
No 196
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=96.25 E-value=0.015 Score=48.46 Aligned_cols=63 Identities=17% Similarity=0.326 Sum_probs=41.8
Q ss_pred eEEecCCCeEEEEEEcc-CC-CCeEEEeeCCccccCCCCc----eeecceEEEEeee--------cCCeEEEEEEEec
Q psy8771 115 LEVMLDSPLNLSCVAVG-SP-MPFVKWRKGQNIELTPDDK----LPVGRNVLTLDRV--------TESENYTCIAASV 178 (904)
Q Consensus 115 ~~~~~g~~~~l~C~~~g-~p-~p~i~W~k~~~~~~~~~~~----~~~~~~~l~i~~l--------~d~g~Y~c~a~n~ 178 (904)
.....++.++|.|.+.| .| ...|+|++| |..+..+.. ....++++.+... .++..|+|.+...
T Consensus 12 ~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~-g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~ 88 (100)
T cd07699 12 EELEKSGKATLVCLINDFYPGFATVQWKVD-GATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHE 88 (100)
T ss_pred HHHccCCCcEEEEEEEeEECCCCEEEEEEC-CEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEec
Confidence 34446788999999999 56 468999999 666543211 2223666665443 2478899998754
No 197
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=96.24 E-value=0.042 Score=45.02 Aligned_cols=67 Identities=16% Similarity=0.280 Sum_probs=43.1
Q ss_pred CCeEEEEEEccC-CCCeEEEeeCCcc---cc-------------CCCCceee-----cceEEEEeee--cCCeEEEEEEE
Q psy8771 121 SPLNLSCVAVGS-PMPFVKWRKGQNI---EL-------------TPDDKLPV-----GRNVLTLDRV--TESENYTCIAA 176 (904)
Q Consensus 121 ~~~~l~C~~~g~-p~p~i~W~k~~~~---~~-------------~~~~~~~~-----~~~~l~i~~l--~d~g~Y~c~a~ 176 (904)
+.++|.|..... ....|+|.|-.+. .+ ....|+.. .+.+|.|.|+ +|+|.|+|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~ 80 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV 80 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence 468899998743 3357889984221 11 11134443 3579999999 79999999876
Q ss_pred e-cCcceEEEEE
Q psy8771 177 S-VLGVIETSTI 187 (904)
Q Consensus 177 n-~~g~~~~~~~ 187 (904)
. ..|..++.+.
T Consensus 81 t~P~g~~~~~i~ 92 (96)
T cd05889 81 TYPQGSWEKVIE 92 (96)
T ss_pred eCCCCCeEEEEE
Confidence 5 3565555443
No 198
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=96.22 E-value=0.023 Score=43.52 Aligned_cols=56 Identities=32% Similarity=0.644 Sum_probs=41.1
Q ss_pred eEEEEEEccCCCCeEEEeeCCccccCCCC--------ceeecceEEEEeee--cCCeEEEEEEEecC
Q psy8771 123 LNLSCVAVGSPMPFVKWRKGQNIELTPDD--------KLPVGRNVLTLDRV--TESENYTCIAASVL 179 (904)
Q Consensus 123 ~~l~C~~~g~p~p~i~W~k~~~~~~~~~~--------~~~~~~~~l~i~~l--~d~g~Y~c~a~n~~ 179 (904)
+.|.|.+.+.+...+.|+++ +....... ........|.|.++ .|+|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKN-GKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCCcEEEEEC-CEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 47899999988889999998 43332221 12234567888888 59999999998765
No 199
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=96.22 E-value=0.033 Score=45.13 Aligned_cols=73 Identities=10% Similarity=0.118 Sum_probs=46.5
Q ss_pred eEEEeecCCeEEEEEeCCCccc----eEEEEEEEeCCCCCCeEEeecceeceEEEcCCCCCCeEEEEEEEEcCCCCCCCC
Q psy8771 207 VKISEVTATSVRLDWTYPSETL----LYYVIQYKPKAANTPYSEISGIITTYYTVRNLSPYTEYEFYIIAVNNLGRGPPS 282 (904)
Q Consensus 207 l~~~~~~~~sv~l~W~~~~~~~----~~y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~s~~s 282 (904)
|.+...+...+.+.|...+..+ ..|.+..... .......+.|.++...+.+.|+|.|.|..|.....
T Consensus 6 l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~---------~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~ 76 (88)
T cd05735 6 MSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEV---------GDEVISTLQILPTVREDSGFFSCHAINSYGEDRGI 76 (88)
T ss_pred EEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecC---------CCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEE
Confidence 4455555666788887764322 1233322211 01223679999999999999999999999986544
Q ss_pred CCeEEe
Q psy8771 283 SPAVIT 288 (904)
Q Consensus 283 ~~~~~~ 288 (904)
..+.+.
T Consensus 77 ~~L~V~ 82 (88)
T cd05735 77 IQLTVQ 82 (88)
T ss_pred EEEEEe
Confidence 444443
No 200
>PHA03376 BARF1; Provisional
Probab=96.11 E-value=0.064 Score=48.32 Aligned_cols=66 Identities=15% Similarity=0.143 Sum_probs=45.1
Q ss_pred eEEecCCCeEEEEEEc---cCCCCeEEEeeCCc----ccc------------CCCCceee----cceEEEEeee--cCCe
Q psy8771 115 LEVMLDSPLNLSCVAV---GSPMPFVKWRKGQN----IEL------------TPDDKLPV----GRNVLTLDRV--TESE 169 (904)
Q Consensus 115 ~~~~~g~~~~l~C~~~---g~p~p~i~W~k~~~----~~~------------~~~~~~~~----~~~~l~i~~l--~d~g 169 (904)
+++..|+++.|.|... ..+...|+|+|.+. ..+ +...++.+ ++-+|.|.++ +|+|
T Consensus 21 Vta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDdG 100 (221)
T PHA03376 21 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDG 100 (221)
T ss_pred hhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCCc
Confidence 7888999999999876 34556899999421 111 12222322 3457888888 7999
Q ss_pred EEEEEEEecCc
Q psy8771 170 NYTCIAASVLG 180 (904)
Q Consensus 170 ~Y~c~a~n~~g 180 (904)
.|+|...-...
T Consensus 101 tY~C~fQkge~ 111 (221)
T PHA03376 101 NYLCRMKLGET 111 (221)
T ss_pred eEEEEEEcCCC
Confidence 99998875443
No 201
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=95.99 E-value=0.04 Score=44.99 Aligned_cols=58 Identities=24% Similarity=0.367 Sum_probs=37.9
Q ss_pred cCCCeEEEEEEcc-CCC-CeEEEeeCCccccCCCCc----eeecceEEEEeee-----cCCeEEEEEEEe
Q psy8771 119 LDSPLNLSCVAVG-SPM-PFVKWRKGQNIELTPDDK----LPVGRNVLTLDRV-----TESENYTCIAAS 177 (904)
Q Consensus 119 ~g~~~~l~C~~~g-~p~-p~i~W~k~~~~~~~~~~~----~~~~~~~l~i~~l-----~d~g~Y~c~a~n 177 (904)
.++.++|.|.+.| .|. ..|+|.+| |..+..+.. ....++++.+... .++..|+|.+.-
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~~-g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~~~~~~~ytC~V~H 82 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLKN-GVPVTDGVSETRYYPRQDLSFQKFSYLNFTPEEGDIYSCIVEH 82 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEEC-CeEccCceEEeeeEeCCCCcEEEEEEEEEECCCCCeEEEEEEe
Confidence 4566899999999 565 57899999 666544321 1224555554322 466789998864
No 202
>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R ....
Probab=95.98 E-value=0.034 Score=47.05 Aligned_cols=79 Identities=23% Similarity=0.336 Sum_probs=57.9
Q ss_pred CCCCCCCeEEEecCCceEEEEecCCCCCCCceeeEEEEEEeCCCCCCcceEEEe---ecCceEEEEcCCC--CCCeEEEE
Q psy8771 481 PGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQV---VDNNQLTTISDLT--PHTIYTIR 555 (904)
Q Consensus 481 p~~~p~~l~v~~~~~~~~~l~W~~p~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~L~--p~t~Y~~~ 555 (904)
...+|.++++...+ -...|.|+++... ..-..|.|+|+... ...|+... ....+.+.++... +...|.++
T Consensus 21 ~lp~P~nv~~~s~n-f~~iL~W~~~~~~-~~~~~ytVq~~~~~---~~~W~~v~~C~~i~~~~Cdlt~~~~~~~~~Y~~r 95 (107)
T PF01108_consen 21 SLPAPQNVTVDSVN-FKHILRWDPGPGS-PPNVTYTVQYKKYG---SSSWKDVPGCQNITETSCDLTDETSDPSESYYAR 95 (107)
T ss_dssp SGSSCEEEEEEEET-TEEEEEEEESTTS-SSTEEEEEEEEESS---TSCEEEECCEEEESSSEEECTTCCTTTTSEEEEE
T ss_pred cCCCCCeeEEEEEC-CceEEEeCCCCCC-CCCeEEEEEEEecC---CcceeeccceecccccceeCcchhhcCcCCEEEE
Confidence 34688999998876 5689999995433 35588999999433 25677662 2455788887754 78899999
Q ss_pred EEEEeCCCC
Q psy8771 556 VQAFTSVGP 564 (904)
Q Consensus 556 V~a~~~~g~ 564 (904)
|+|..+...
T Consensus 96 V~A~~~~~~ 104 (107)
T PF01108_consen 96 VRAEVGNQT 104 (107)
T ss_dssp EEEEETTEE
T ss_pred EEEEeCCcc
Confidence 999987543
No 203
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=95.94 E-value=0.019 Score=46.77 Aligned_cols=64 Identities=19% Similarity=0.271 Sum_probs=37.5
Q ss_pred EEecCCCeEEEEEEc-cCCCCeEEEeeCCccccCCC-Cce--eecc------eEEEEeee--cCCeEEEEEEEecCc
Q psy8771 116 EVMLDSPLNLSCVAV-GSPMPFVKWRKGQNIELTPD-DKL--PVGR------NVLTLDRV--TESENYTCIAASVLG 180 (904)
Q Consensus 116 ~~~~g~~~~l~C~~~-g~p~p~i~W~k~~~~~~~~~-~~~--~~~~------~~l~i~~l--~d~g~Y~c~a~n~~g 180 (904)
....|+.+.|.|.+. |.|.|.|+|+.+ +..+... ... ...+ ..|.+.-- .++..++|.|.+..-
T Consensus 10 ~~~~~~~~~~~C~s~~~~P~~~i~W~~~-~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~ 85 (89)
T PF08205_consen 10 LEGEGEEVTLTCSSSGGYPPPQITWYLD-GGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPAL 85 (89)
T ss_dssp EESSTEEEEEEEEEEEEBS-EEEEEEET-TCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTC
T ss_pred EcccceEEEEEEEeCCeECCeEEEEEEC-CCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCcc
Confidence 333478999999666 689999999999 4433110 000 1111 12333221 267888999988654
No 204
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=95.92 E-value=0.027 Score=47.38 Aligned_cols=62 Identities=21% Similarity=0.288 Sum_probs=42.2
Q ss_pred EEecCCCeEEEEEEccCCCCeEEEeeCCcc---cc------CC------------CCceee----cceEEEEeee--cCC
Q psy8771 116 EVMLDSPLNLSCVAVGSPMPFVKWRKGQNI---EL------TP------------DDKLPV----GRNVLTLDRV--TES 168 (904)
Q Consensus 116 ~~~~g~~~~l~C~~~g~p~p~i~W~k~~~~---~~------~~------------~~~~~~----~~~~l~i~~l--~d~ 168 (904)
.+.+|++++|.|...+.-...+.|+|-... .+ .. ..|+.. ....|.|.++ +|+
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDs 81 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENE 81 (104)
T ss_pred cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHC
Confidence 357899999999987765567999984221 10 00 123332 2346999999 699
Q ss_pred eEEEEEEEe
Q psy8771 169 ENYTCIAAS 177 (904)
Q Consensus 169 g~Y~c~a~n 177 (904)
|.|.|.+.+
T Consensus 82 gtY~Ca~~~ 90 (104)
T cd05720 82 GYYFCSVAS 90 (104)
T ss_pred EEEEEEEcc
Confidence 999998764
No 205
>KOG4806|consensus
Probab=95.90 E-value=0.42 Score=47.43 Aligned_cols=128 Identities=16% Similarity=0.213 Sum_probs=77.7
Q ss_pred EEEeCCCCCcEEEEEEEEEcCCCCCCCCCCeeEEec---CCCCCCCCCCcEEEecC--CCEEEEEecCCCCCCCCccEEE
Q psy8771 677 YSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTK---QYVPGAPPQNVSCEPLS--STSIRISWEPPPVERSNGHIVY 751 (904)
Q Consensus 677 ~~l~~L~p~t~Y~v~V~a~~~~G~~~~s~~~~~~t~---~~~p~~~P~~l~~~~~~--~~~v~l~W~~~~~~~~~g~~~~ 751 (904)
+.-..+.++..|..+++..|..- +..-.-+..+|. ..-|. .|.+-.+..+. -++.++.|...+. .-..
T Consensus 286 ~~Qfvv~~~~~~~~rf~~~ndde-~~~~v~V~aSt~~t~~~~P~-LP~dTtVk~v~r~CSsAtIaW~gs~d-----~~~k 358 (454)
T KOG4806|consen 286 IRQFVVLPGERYLMRFEPSNDDE-ALQKVMVAASTEATFRDLPE-LPQDTTVKNVRRRCSSATIAWNGSPD-----EELK 358 (454)
T ss_pred eeEEEecCCCceEEEEEecCCch-hhheeEeeeecccccCcCCC-CCCCceEeeeccccchheeeeccCcc-----hhee
Confidence 33456788899999999988742 221111222222 22344 46777776554 4789999997752 1457
Q ss_pred EEEEEEEccCCCC--------------cc--E-----E------EEec-CcceEEecCCCCCceEEEEEEEeeCCCCCCC
Q psy8771 752 YKLQFVETGRSDS--------------EA--S-----I------VTLK-NQTSFVLDELKKWTEYRIWVLAGTSIGDGPS 803 (904)
Q Consensus 752 Y~v~~~~~~~~~~--------------~~--~-----~------~~~~-~~~~~~i~~L~p~t~Y~~~V~a~~~~g~g~~ 803 (904)
|.|+......... .. . + ...+ +..+-+|.||.||..|.+.|.|.-..|...+
T Consensus 359 yCIy~~~~~~~e~~v~~~~N~C~g~~~~~~s~~v~c~y~hs~~~q~~~~~i~teTI~gL~PgssYlldv~a~~~~g~~lp 438 (454)
T KOG4806|consen 359 YCIYVFNLPQRERSVVDFTNYCMGFVPKRVSQYVYCEYMHSRERQQSPDNIETETILGLMPGSSYLLDVTANLSMGKPLP 438 (454)
T ss_pred EEEEEecccchhhhhhhhhccccCccccceeEEEeEEEecChhhhcchhhhhhhhhcccccCceEEEEEEEcccCCcccc
Confidence 8887776542100 00 0 0 0111 3445678999999999999999877776655
Q ss_pred CCcEEeec
Q psy8771 804 SYPITIRT 811 (904)
Q Consensus 804 s~~~~~~t 811 (904)
-..+.++|
T Consensus 439 yqa~~v~t 446 (454)
T KOG4806|consen 439 YQALTVHT 446 (454)
T ss_pred ceeEEEEe
Confidence 55555555
No 206
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=95.90 E-value=0.047 Score=44.73 Aligned_cols=59 Identities=29% Similarity=0.487 Sum_probs=39.3
Q ss_pred cCCCeEEEEEEcc-CCCC-eEEEeeCCccccCCC----CceeecceEEEEeee-----cCCeEEEEEEEec
Q psy8771 119 LDSPLNLSCVAVG-SPMP-FVKWRKGQNIELTPD----DKLPVGRNVLTLDRV-----TESENYTCIAASV 178 (904)
Q Consensus 119 ~g~~~~l~C~~~g-~p~p-~i~W~k~~~~~~~~~----~~~~~~~~~l~i~~l-----~d~g~Y~c~a~n~ 178 (904)
.|+.++|.|.+.| .|.. .++|+++ |..+..+ .-...+++++.+... +++..|+|.+...
T Consensus 13 ~~~~~~L~C~~~gFyP~~i~v~W~~~-g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~ 82 (94)
T cd05766 13 LSHPHLLVCHVWGFYPPEITVKWFKN-GQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHS 82 (94)
T ss_pred CCCCeEEEEEEeeecCCCCEEEEEEC-CeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeC
Confidence 6789999999999 5654 7899999 6555432 112234455555332 4677899988653
No 207
>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R ....
Probab=95.88 E-value=0.027 Score=47.64 Aligned_cols=77 Identities=23% Similarity=0.335 Sum_probs=54.2
Q ss_pred CCCCCcEEEecCCCEEEEEecCCCCCCCCccEEEEEEEEEEccCCCCccE--EEEecCcceEEecCCC--CCceEEEEEE
Q psy8771 718 APPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEAS--IVTLKNQTSFVLDELK--KWTEYRIWVL 793 (904)
Q Consensus 718 ~~P~~l~~~~~~~~~v~l~W~~~~~~~~~g~~~~Y~v~~~~~~~~~~~~~--~~~~~~~~~~~i~~L~--p~t~Y~~~V~ 793 (904)
.+|.++++... .-...|+|+++. ....-..|.|+|+......+... +..+ ..+.+.+.... ....|.+||+
T Consensus 23 p~P~nv~~~s~-nf~~iL~W~~~~---~~~~~~~ytVq~~~~~~~~W~~v~~C~~i-~~~~Cdlt~~~~~~~~~Y~~rV~ 97 (107)
T PF01108_consen 23 PAPQNVTVDSV-NFKHILRWDPGP---GSPPNVTYTVQYKKYGSSSWKDVPGCQNI-TETSCDLTDETSDPSESYYARVR 97 (107)
T ss_dssp SSCEEEEEEEE-TTEEEEEEEEST---TSSSTEEEEEEEEESSTSCEEEECCEEEE-SSSEEECTTCCTTTTSEEEEEEE
T ss_pred CCCCeeEEEEE-CCceEEEeCCCC---CCCCCeEEEEEEEecCCcceeeccceecc-cccceeCcchhhcCcCCEEEEEE
Confidence 36899999875 556899999963 23456799999995554444332 2223 56777776644 6889999999
Q ss_pred EeeCCC
Q psy8771 794 AGTSIG 799 (904)
Q Consensus 794 a~~~~g 799 (904)
|.....
T Consensus 98 A~~~~~ 103 (107)
T PF01108_consen 98 AEVGNQ 103 (107)
T ss_dssp EEETTE
T ss_pred EEeCCc
Confidence 987543
No 208
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=95.83 E-value=0.042 Score=44.67 Aligned_cols=57 Identities=18% Similarity=0.279 Sum_probs=39.4
Q ss_pred cCCCeEEEEEEcc-CCC-CeEEEeeCCccccCCCCc----eeecceEEEEeee-----cCCeEEEEEEEe
Q psy8771 119 LDSPLNLSCVAVG-SPM-PFVKWRKGQNIELTPDDK----LPVGRNVLTLDRV-----TESENYTCIAAS 177 (904)
Q Consensus 119 ~g~~~~l~C~~~g-~p~-p~i~W~k~~~~~~~~~~~----~~~~~~~l~i~~l-----~d~g~Y~c~a~n 177 (904)
.|+..+|.|.|.| .|. ..|+|.|| |..+. +.. +...++++.+... .++..|.|.+.-
T Consensus 14 ~g~~~~L~C~a~gFyP~~i~v~W~~d-g~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H 81 (93)
T cd05770 14 NGKPNVLNCYVTGFHPPDIEIRLLKN-GVKIP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRH 81 (93)
T ss_pred CCCceEEEEEEEEEeCCCCEEEEEEC-CEECC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEE
Confidence 5677899999999 564 57899999 76665 322 2235666665432 477889998865
No 209
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=95.71 E-value=0.072 Score=43.65 Aligned_cols=60 Identities=15% Similarity=0.247 Sum_probs=36.1
Q ss_pred CCCeEEEEEEc-cCCCCeEEEeeCCccccCCCCceeecce------EEEEeee--cCCeEEEEEEEecCc
Q psy8771 120 DSPLNLSCVAV-GSPMPFVKWRKGQNIELTPDDKLPVGRN------VLTLDRV--TESENYTCIAASVLG 180 (904)
Q Consensus 120 g~~~~l~C~~~-g~p~p~i~W~k~~~~~~~~~~~~~~~~~------~l~i~~l--~d~g~Y~c~a~n~~g 180 (904)
.....+.|.+. |.|.+.|+|+++..... ........++ .|.+.-. .++..|+|++.+..-
T Consensus 15 ~~~~va~C~s~~gkP~a~ItW~~~~~~~~-~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l 83 (95)
T cd05719 15 EPVTVATCVSANGKPPATISWETTLGGEA-ETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTL 83 (95)
T ss_pred CccEEEEEECCCCcCCCEEEEEeCCCCcc-eeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCccc
Confidence 35667899985 89999999999722211 1111111222 2333222 467889999988653
No 210
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=95.59 E-value=0.1 Score=44.24 Aligned_cols=64 Identities=25% Similarity=0.383 Sum_probs=39.4
Q ss_pred eEEecCCCeEEEEEEcc-CCC-CeEEEeeCCccccCCCCc-ee-ecc-eEEEEee-e------cCC-eEEEEEEEecC
Q psy8771 115 LEVMLDSPLNLSCVAVG-SPM-PFVKWRKGQNIELTPDDK-LP-VGR-NVLTLDR-V------TES-ENYTCIAASVL 179 (904)
Q Consensus 115 ~~~~~g~~~~l~C~~~g-~p~-p~i~W~k~~~~~~~~~~~-~~-~~~-~~l~i~~-l------~d~-g~Y~c~a~n~~ 179 (904)
.....|+.++|.|.+.| .|. ..|+|+|| |..+..... .. ..+ +++.+.. | .|. ..|+|.+....
T Consensus 16 ~~~~~g~~~tL~C~a~gF~P~~i~v~W~kn-g~~~~~~~~~~~p~~d~~ty~~~S~L~~~~~~~d~~~~ytC~V~H~~ 92 (111)
T cd05772 16 GRANPGQSVNFTCSAHGFSPRDITVKWLKN-GNELSAEQPNITPEGDSVSYNVTSTVQVKLTEDDVHSQVTCEVQHRT 92 (111)
T ss_pred hccCCCCCEEEEEEEeeEeCCCCEEEEEEC-CEECcccccceeeCCCCCcEEEEEEEEEECccccccCceEEEEEeCC
Confidence 34457888999999998 564 68999999 666543211 11 122 2444422 1 232 35999987643
No 211
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=95.56 E-value=0.085 Score=43.75 Aligned_cols=39 Identities=10% Similarity=0.003 Sum_probs=31.7
Q ss_pred ceeceEEEcCCCCCCeEEEEEEEEcCCCCCCCCCCeEEe
Q psy8771 250 IITTYYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVIT 288 (904)
Q Consensus 250 ~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~s~~s~~~~~~ 288 (904)
...+.+.|.++...+.+.|+|.|.|..|....+..+.+.
T Consensus 53 ~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~l~V~ 91 (98)
T cd05762 53 ENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVNLTVV 91 (98)
T ss_pred CCeeEEEECCCChhhCEEEEEEEEcCCCceeEEEEEEEe
Confidence 335789999999999999999999999987655444444
No 212
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=95.37 E-value=0.06 Score=39.47 Aligned_cols=51 Identities=18% Similarity=0.363 Sum_probs=35.4
Q ss_pred EecCCCeEEEEEEccCCCCeEEEeeCCccccCCCCceeecceEEEEeee-cCCeEEEEEEEe
Q psy8771 117 VMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRNVLTLDRV-TESENYTCIAAS 177 (904)
Q Consensus 117 ~~~g~~~~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~l~i~~l-~d~g~Y~c~a~n 177 (904)
...|..|+|.|...+.. |.|.++ ...+.. .+..+.+.+. ++.|.|+|.+.+
T Consensus 4 sisGTtVtlTCP~~~~~---i~W~~n-~~~~~g------~~~~~~~~~~~e~~G~Y~C~~~~ 55 (65)
T cd07692 4 SISGTTVTVTCPLSGDD---IKWKKN-DQVSQG------SDEKYLSLNHFSSSGYYHCTADN 55 (65)
T ss_pred EEeccEEEEECCCCCCC---ceEEeC-CccCCC------CCceEEeeccCCCCceEEEEeCC
Confidence 35789999999866433 999999 544433 2234444444 789999999964
No 213
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=95.31 E-value=0.09 Score=45.34 Aligned_cols=63 Identities=21% Similarity=0.290 Sum_probs=43.6
Q ss_pred eEEecCCCeEEEEEEccCC--CCeEEEeeCC--ccc--c---C-----------CCCceeec------ceEEEEeee--c
Q psy8771 115 LEVMLDSPLNLSCVAVGSP--MPFVKWRKGQ--NIE--L---T-----------PDDKLPVG------RNVLTLDRV--T 166 (904)
Q Consensus 115 ~~~~~g~~~~l~C~~~g~p--~p~i~W~k~~--~~~--~---~-----------~~~~~~~~------~~~l~i~~l--~ 166 (904)
..+.+|++++|.|...+.- ...+.|+|-. +.+ + . ...|+... ...|.|.++ +
T Consensus 7 ~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~ 86 (117)
T cd04981 7 GLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLTPE 86 (117)
T ss_pred eEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCCHH
Confidence 8899999999999987654 4568999831 211 1 0 01344331 126899999 6
Q ss_pred CCeEEEEEEEe
Q psy8771 167 ESENYTCIAAS 177 (904)
Q Consensus 167 d~g~Y~c~a~n 177 (904)
|+|.|.|.+..
T Consensus 87 Dsa~YyCa~~~ 97 (117)
T cd04981 87 DTAVYYCARGL 97 (117)
T ss_pred HCEEEEEEEEc
Confidence 99999998764
No 214
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=95.19 E-value=0.098 Score=40.81 Aligned_cols=56 Identities=23% Similarity=0.394 Sum_probs=34.6
Q ss_pred CeEEEEEEccC-CC-CeEEEeeCCccccCCCCc----eeecceEEEEee------e--cCCeEEEEEEEec
Q psy8771 122 PLNLSCVAVGS-PM-PFVKWRKGQNIELTPDDK----LPVGRNVLTLDR------V--TESENYTCIAASV 178 (904)
Q Consensus 122 ~~~l~C~~~g~-p~-p~i~W~k~~~~~~~~~~~----~~~~~~~l~i~~------l--~d~g~Y~c~a~n~ 178 (904)
.++|.|.+.|. |. ..|+|+|+ |..+..+.. ....++.+.+.. . .++..|+|.+...
T Consensus 1 ~~~L~C~a~gf~P~~i~v~W~k~-g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~ 70 (75)
T smart00407 1 KATLVCLVSGFYPPDITVTWLRN-GQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHE 70 (75)
T ss_pred CeEEEEEEEeEeCCCCEEEEEEC-CEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEc
Confidence 46899999995 55 68999999 654333211 111344333322 1 4678899988653
No 215
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=95.12 E-value=0.12 Score=42.29 Aligned_cols=61 Identities=15% Similarity=0.169 Sum_probs=36.4
Q ss_pred CCCeEEEEEEc-cCCCCeEEEeeCCccccCCCCceeecceE------EEEeee--cCCeEEEEEEEecCcc
Q psy8771 120 DSPLNLSCVAV-GSPMPFVKWRKGQNIELTPDDKLPVGRNV------LTLDRV--TESENYTCIAASVLGV 181 (904)
Q Consensus 120 g~~~~l~C~~~-g~p~p~i~W~k~~~~~~~~~~~~~~~~~~------l~i~~l--~d~g~Y~c~a~n~~g~ 181 (904)
.....+.|.+. |.|.+.|+|+++... ..........++. |.+.-. .++..|+|++.+..-.
T Consensus 15 ~~~~va~C~s~~gkPaa~IsW~~~~~g-~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~ 84 (95)
T cd07703 15 IPVPVAKCVSANGRPPARISWSSTLGG-NANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQ 84 (95)
T ss_pred CccEEEEEEcCCCCCCcEEEEEcCCCC-CeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccC
Confidence 35678999777 789999999998222 1111111112232 333222 4678899999986543
No 216
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=94.82 E-value=0.19 Score=41.13 Aligned_cols=60 Identities=17% Similarity=0.228 Sum_probs=38.7
Q ss_pred cCCCeEEEEEEcc-CCC-CeEEEeeCCccccCCCC----ceeecceEEEEeee--------cCCeEEEEEEEecC
Q psy8771 119 LDSPLNLSCVAVG-SPM-PFVKWRKGQNIELTPDD----KLPVGRNVLTLDRV--------TESENYTCIAASVL 179 (904)
Q Consensus 119 ~g~~~~l~C~~~g-~p~-p~i~W~k~~~~~~~~~~----~~~~~~~~l~i~~l--------~d~g~Y~c~a~n~~ 179 (904)
.++.++|.|.+.| .|. ..|+|.++ |..+..+. -...+++++.+... .++..|+|.+....
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~d-g~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~ 86 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVD-GQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQG 86 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEEC-CEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECC
Confidence 4567999999999 565 67899999 65553321 11223445554332 25688999997644
No 217
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=94.81 E-value=0.12 Score=42.52 Aligned_cols=63 Identities=14% Similarity=0.408 Sum_probs=39.6
Q ss_pred EEecCCCeEEEEEEccC--CC-CeEEEeeCCccccCC--CCceeecceEEEEeee--------cCCeEEEEEEEec
Q psy8771 116 EVMLDSPLNLSCVAVGS--PM-PFVKWRKGQNIELTP--DDKLPVGRNVLTLDRV--------TESENYTCIAASV 178 (904)
Q Consensus 116 ~~~~g~~~~l~C~~~g~--p~-p~i~W~k~~~~~~~~--~~~~~~~~~~l~i~~l--------~d~g~Y~c~a~n~ 178 (904)
.+..|+.++|.|.+.|. |. ..|+|.|+++..... .......++++.+... .++-.|+|.+...
T Consensus 10 ~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~ 85 (96)
T cd07696 10 QLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHP 85 (96)
T ss_pred HhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECC
Confidence 34568999999999998 54 478999984433221 1112234555555433 1456799988653
No 218
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=94.63 E-value=0.14 Score=41.46 Aligned_cols=28 Identities=21% Similarity=0.210 Sum_probs=25.4
Q ss_pred ceEEEcCCCCCCeEEEEEEEEcCCCCCC
Q psy8771 253 TYYTVRNLSPYTEYEFYIIAVNNLGRGP 280 (904)
Q Consensus 253 ~~~~i~~L~p~~~Y~~~v~a~n~~g~s~ 280 (904)
..+.|.++++.+.+.|+|.|.|..|...
T Consensus 53 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~ 80 (88)
T cd05851 53 AVLKIFNIQPEDEGTYECEAENIKGKDK 80 (88)
T ss_pred CEEEECcCChhhCEEEEEEEEcCCCceE
Confidence 5799999999999999999999999754
No 219
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=94.58 E-value=0.35 Score=39.41 Aligned_cols=63 Identities=16% Similarity=0.202 Sum_probs=40.0
Q ss_pred eEEecCCCeEE-EEEEc-cCCCCeEEEeeCCccccCCCCceeecce------EEEEeee--cCCeEEEEEEEec
Q psy8771 115 LEVMLDSPLNL-SCVAV-GSPMPFVKWRKGQNIELTPDDKLPVGRN------VLTLDRV--TESENYTCIAASV 178 (904)
Q Consensus 115 ~~~~~g~~~~l-~C~~~-g~p~p~i~W~k~~~~~~~~~~~~~~~~~------~l~i~~l--~d~g~Y~c~a~n~ 178 (904)
+.+.+|+.+.+ .|.+. |.|.+.|+|+.+..+.. ........++ .|.+.-. .++-.++|.+...
T Consensus 11 ~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~-~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~ 83 (97)
T cd07704 11 LLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTS-ESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHP 83 (97)
T ss_pred eEeecCcceeEEEEEccCCccCCEeEEeCCCCCcc-ceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCc
Confidence 77889999999 88766 78999999998733321 1111111222 2333222 4778899998764
No 220
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=94.47 E-value=0.11 Score=40.53 Aligned_cols=63 Identities=10% Similarity=0.127 Sum_probs=40.5
Q ss_pred eEEEeecCCeEEEEEeCCCccceEEEEEEEeCCCCCCeEEeecceeceEEEcCCCCCCeEEEEEEEEcCCCCC
Q psy8771 207 VKISEVTATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEISGIITTYYTVRNLSPYTEYEFYIIAVNNLGRG 279 (904)
Q Consensus 207 l~~~~~~~~sv~l~W~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~s 279 (904)
|.+...+.....+.|...+..+. ...............+.|.++.+.+.+.|+|.|.|..|..
T Consensus 4 l~c~~~G~P~p~v~W~k~g~~l~----------~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 66 (74)
T cd05748 4 LEVPISGRPTPTVTWSKDGKPLK----------LSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEK 66 (74)
T ss_pred EEeeEeeeCCCeEEEEECCEEcC----------CCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccE
Confidence 34444455566788876543321 0111222222335779999999999999999999999864
No 221
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=94.36 E-value=0.12 Score=41.68 Aligned_cols=67 Identities=10% Similarity=0.114 Sum_probs=43.5
Q ss_pred CcceEEEeecCCeEEEEEeCCCccceEEEEEEEeCCCCCCeEEeecceeceEEEcCCCCCCeEEEEEEEEcCCCCC
Q psy8771 204 PLDVKISEVTATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEISGIITTYYTVRNLSPYTEYEFYIIAVNNLGRG 279 (904)
Q Consensus 204 p~~l~~~~~~~~sv~l~W~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~s 279 (904)
...|.+...+.....+.|...+.++.. ....+..........|.|.++.+.+.+.|+|.|.|..|..
T Consensus 12 ~v~l~c~~~G~P~P~v~W~k~~~~i~~---------~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~ 78 (86)
T cd05894 12 KLRLDVPISGEPAPTVTWSRGDKAFTE---------TEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGED 78 (86)
T ss_pred EEEEEeeEeecCCCeEEEEECCEECcc---------CCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcE
Confidence 345555556666678888766443321 0111222222234679999999999999999999999964
No 222
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=94.34 E-value=0.22 Score=42.39 Aligned_cols=66 Identities=20% Similarity=0.357 Sum_probs=40.9
Q ss_pred eEEecCCCeEEEEEEcc-CCC-CeEEEeeCCccccCCCCc---eee--cceEEEEeee------c--C-CeEEEEEEEec
Q psy8771 115 LEVMLDSPLNLSCVAVG-SPM-PFVKWRKGQNIELTPDDK---LPV--GRNVLTLDRV------T--E-SENYTCIAASV 178 (904)
Q Consensus 115 ~~~~~g~~~~l~C~~~g-~p~-p~i~W~k~~~~~~~~~~~---~~~--~~~~l~i~~l------~--d-~g~Y~c~a~n~ 178 (904)
.....++.++|.|.+.| .|. ..|+|+|| +..+..+.. ... +++++.+... + + +..|+|.+.-.
T Consensus 13 ~e~~~~~~~tL~Cla~gFyP~~I~V~W~kn-g~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~ 91 (115)
T cd05769 13 AEIRNKRKATLVCLATGFYPDHVSLSWKVN-GKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFY 91 (115)
T ss_pred HHhccCCCcEEEEEEEeEeCCCcEEEEEEC-CEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEe
Confidence 33445678999999999 565 48899999 655543321 111 2245554332 1 2 57899988765
Q ss_pred Ccc
Q psy8771 179 LGV 181 (904)
Q Consensus 179 ~g~ 181 (904)
...
T Consensus 92 g~~ 94 (115)
T cd05769 92 GGT 94 (115)
T ss_pred CCc
Confidence 443
No 223
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=94.20 E-value=0.13 Score=42.85 Aligned_cols=60 Identities=25% Similarity=0.478 Sum_probs=37.8
Q ss_pred EecCCCeEEEEEEcc-CCC-CeEEEeeCCccccCCCCc----eee---cceEEEEeee--------cCCeEEEEEEEe
Q psy8771 117 VMLDSPLNLSCVAVG-SPM-PFVKWRKGQNIELTPDDK----LPV---GRNVLTLDRV--------TESENYTCIAAS 177 (904)
Q Consensus 117 ~~~g~~~~l~C~~~g-~p~-p~i~W~k~~~~~~~~~~~----~~~---~~~~l~i~~l--------~d~g~Y~c~a~n 177 (904)
+..|+.++|.|.+.| .|. ..|+|.|+ |..+..... ... +++++.+... .++..|+|.+.-
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~i~v~W~k~-g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H 89 (102)
T cd05768 13 LSLQETATLTCLVKGFSPSDIFVKWLQN-GQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGH 89 (102)
T ss_pred hCcCCceEEEEEEeeEeCCCCEEEEEEC-CEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEe
Confidence 345788999999999 454 36799999 655543211 111 1455555432 246789998864
No 224
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=94.19 E-value=0.13 Score=37.95 Aligned_cols=47 Identities=21% Similarity=0.480 Sum_probs=33.5
Q ss_pred CCCeEEEEEEccCCCCeEEEeeCCccccCCCCceeecceEEEEeee--cCCeEEEEEEEe
Q psy8771 120 DSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRNVLTLDRV--TESENYTCIAAS 177 (904)
Q Consensus 120 g~~~~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~l~i~~l--~d~g~Y~c~a~n 177 (904)
...+.|.|.+. -.|+|+|+ ...... ....|.|..+ .+.|.|+|.+.+
T Consensus 6 ~~~V~L~C~~~----tsi~W~kG-~~~~~~------~~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 6 EGKVFLKCNGA----TNITWKKG-KEILEV------SNTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred CceEEEEecCC----CcEEEecC-cccccc------cccEEeccCcccCCCcceEecCcc
Confidence 45789999662 44999995 433321 2567777776 689999998876
No 225
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=94.14 E-value=0.2 Score=39.99 Aligned_cols=60 Identities=22% Similarity=0.460 Sum_probs=40.2
Q ss_pred cCCCeEEEEEEcc-CCCC-eEEEeeCCccccCCCCce---e-ecceEEEEeee-----cCCeEEEEEEEecC
Q psy8771 119 LDSPLNLSCVAVG-SPMP-FVKWRKGQNIELTPDDKL---P-VGRNVLTLDRV-----TESENYTCIAASVL 179 (904)
Q Consensus 119 ~g~~~~l~C~~~g-~p~p-~i~W~k~~~~~~~~~~~~---~-~~~~~l~i~~l-----~d~g~Y~c~a~n~~ 179 (904)
.++.++|.|.+.| .|.. .|+|.++ +..+...... . ..++.+.+... .++..|+|.+....
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~-~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ysC~V~H~~ 77 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKN-GKEVTEGVETTPPPPNSDGTYSVTSSLTVTWNSGDEYSCRVTHES 77 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEET-TEEETTTEEEEEEEEETTSEEEEEEEEEEETTTTGGEEEEEEETT
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEec-cceeeeeeeecccccccccceeeeEEEEecCCCCCEEEEEEEECC
Confidence 4889999999999 5654 7899999 6655543221 1 24555444332 47778999987643
No 226
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=94.11 E-value=0.21 Score=40.97 Aligned_cols=63 Identities=17% Similarity=0.361 Sum_probs=38.8
Q ss_pred EecCCCeEEEEEEcc-C-CC-CeEEEeeCCccccCCCCceeecceEEEEeee--------cCCeEEEEEEEecC
Q psy8771 117 VMLDSPLNLSCVAVG-S-PM-PFVKWRKGQNIELTPDDKLPVGRNVLTLDRV--------TESENYTCIAASVL 179 (904)
Q Consensus 117 ~~~g~~~~l~C~~~g-~-p~-p~i~W~k~~~~~~~~~~~~~~~~~~l~i~~l--------~d~g~Y~c~a~n~~ 179 (904)
...++.++|.|.+.| . |. ..|+|.++++..-.........++++.+... ..+..|+|.+....
T Consensus 16 l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~ 89 (99)
T cd04986 16 LLLGSSASLTCTLSGLRDPEGAVFTWTPSGGKEAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPE 89 (99)
T ss_pred hCcCCccEEEEEEeccCCCCCeEEEEEECCccCcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCC
Confidence 336789999999999 4 54 4789999944311111112224556666544 24566999987543
No 227
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=93.99 E-value=0.47 Score=38.80 Aligned_cols=29 Identities=10% Similarity=0.274 Sum_probs=25.9
Q ss_pred eeceEEEcCCCCCCeEEEEEEEEcCCCCC
Q psy8771 251 ITTYYTVRNLSPYTEYEFYIIAVNNLGRG 279 (904)
Q Consensus 251 ~~~~~~i~~L~p~~~Y~~~v~a~n~~g~s 279 (904)
....+.|.+++..+.+.|+|.|.|..|..
T Consensus 57 ~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~ 85 (92)
T cd05747 57 YKSTFEISKVQMSDEGNYTVVVENSEGKQ 85 (92)
T ss_pred CeeEEEECCCCcccCEeEEEEEEcCCCCE
Confidence 34689999999999999999999999864
No 228
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=93.95 E-value=0.3 Score=39.73 Aligned_cols=29 Identities=17% Similarity=0.176 Sum_probs=25.8
Q ss_pred eceEEEcCCCCCCeEEEEEEEEcCCCCCC
Q psy8771 252 TTYYTVRNLSPYTEYEFYIIAVNNLGRGP 280 (904)
Q Consensus 252 ~~~~~i~~L~p~~~Y~~~v~a~n~~g~s~ 280 (904)
...+.|.++++.+.+.|+|.|.|..|...
T Consensus 55 ~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~ 83 (90)
T cd04972 55 IYNLQLSNITSETQTTVTCTAENPVGQAN 83 (90)
T ss_pred EEEEEEecCCcccCEEEEEEEECCCCcee
Confidence 46799999999999999999999998743
No 229
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=93.93 E-value=0.1 Score=40.64 Aligned_cols=28 Identities=11% Similarity=0.018 Sum_probs=25.2
Q ss_pred ceEEEcCCCCCCeEEEEEEEEcCCCCCC
Q psy8771 253 TYYTVRNLSPYTEYEFYIIAVNNLGRGP 280 (904)
Q Consensus 253 ~~~~i~~L~p~~~Y~~~v~a~n~~g~s~ 280 (904)
..+.|.++++.+.+.|+|.|.|..|...
T Consensus 41 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~ 68 (75)
T cd05893 41 ICLLIQGATKEDAGWYTVSAKNEAGIVS 68 (75)
T ss_pred EEEEECCCCHHHCEEEEEEEEcCCCEEE
Confidence 3689999999999999999999998754
No 230
>smart00406 IGv Immunoglobulin V-Type.
Probab=93.91 E-value=0.17 Score=40.13 Aligned_cols=53 Identities=23% Similarity=0.532 Sum_probs=34.7
Q ss_pred CeEEEEEEccCCCC--eEEEeeCCc-cc---c-------------CCCCceee------cceEEEEeee--cCCeEEEEE
Q psy8771 122 PLNLSCVAVGSPMP--FVKWRKGQN-IE---L-------------TPDDKLPV------GRNVLTLDRV--TESENYTCI 174 (904)
Q Consensus 122 ~~~l~C~~~g~p~p--~i~W~k~~~-~~---~-------------~~~~~~~~------~~~~l~i~~l--~d~g~Y~c~ 174 (904)
.++|.|.+.+...+ .+.|++... .. + ....|+.. +..+|.|.++ +|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 47899998876654 789998421 10 1 01234432 2347999999 699999996
No 231
>COG4733 Phage-related protein, tail component [Function unknown]
Probab=93.90 E-value=0.25 Score=55.24 Aligned_cols=144 Identities=9% Similarity=0.034 Sum_probs=78.8
Q ss_pred EEEEEEeCCccccceEEecccceEEEeCCCCCcEEEEEEEEEcCCCCCCCCC-CeeEE-ecCCCCCCCCCCcEEEecCCC
Q psy8771 654 YELYWNDTYAKAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTP-PIPVR-TKQYVPGAPPQNVSCEPLSST 731 (904)
Q Consensus 654 y~v~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~v~V~a~~~~G~~~~s~-~~~~~-t~~~~p~~~P~~l~~~~~~~~ 731 (904)
+.+.|......++..........+.+.||-+ ..|.++|+|+|..|....-. ...+. .....|+..+..+.+..+ .-
T Consensus 639 ~~~a~~a~~~~~~vta~rt~~~~~~~~gi~~-GqY~i~VrAiN~~g~~~~~a~s~~f~i~g~~~Ppp~~~t~~a~~i-t~ 716 (952)
T COG4733 639 AAWAYEAGWDGNWITAPRTSAAGFDVEGIPA-GQYAIRVRAINVFEPNSPDATAYEFALNGKKVPPPKAMIYDAVII-TL 716 (952)
T ss_pred HHHHhhcccCCceEecccccccceeecCcCc-cceEEEEEEeeccCCCCCCcceeEEEecCCCCCCCcccccceEEE-Ee
Confidence 3444444443433333445567899999988 68999999999988653322 33332 222223322333333332 34
Q ss_pred EEEEEecCCCCCCCCccEEEEEEEEEEccCCCCccEEEEec--CcceEEecCCCCCceEEEEEEEeeCCCCCCCC
Q psy8771 732 SIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLK--NQTSFVLDELKKWTEYRIWVLAGTSIGDGPSS 804 (904)
Q Consensus 732 ~v~l~W~~~~~~~~~g~~~~Y~v~~~~~~~~~~~~~~~~~~--~~~~~~i~~L~p~t~Y~~~V~a~~~~g~g~~s 804 (904)
.+.|.|-.|.. .-.+..=.+++....... .+...+. ......-.+|++|..|.|++++.|..|...+-
T Consensus 717 ~~~l~v~dPt~---~~d~~~sei~~s~~~d~~--~~Ar~LG~~~~~~~~~~~i~~g~~~~F~~R~Vn~vG~~~~~ 786 (952)
T COG4733 717 VIRLVVGDPTG---AVDITSTEIRSAVIADGN--FQARSLGNLNYPGLFSVGIQAGLTFWFRNRNVDLVGNNDKW 786 (952)
T ss_pred eeeEEEecCCc---ceEEeeeeeeeeccccch--hHHhhhhccccccccccCcCCCceEEEEeeecccccccccc
Confidence 67788887732 111222223332222111 1111222 22222337999999999999999998876443
No 232
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=93.83 E-value=0.23 Score=39.82 Aligned_cols=36 Identities=11% Similarity=0.031 Sum_probs=29.4
Q ss_pred eceEEEcCCCCCCeEEEEEEEEcCCCCCCCCCCeEE
Q psy8771 252 TTYYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVI 287 (904)
Q Consensus 252 ~~~~~i~~L~p~~~Y~~~v~a~n~~g~s~~s~~~~~ 287 (904)
...++|.++++.+.+.|+|.|.|..|....+..+.+
T Consensus 46 ~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~V 81 (85)
T cd05854 46 IGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLVV 81 (85)
T ss_pred EeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEEE
Confidence 468999999999999999999999987654444443
No 233
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=93.78 E-value=0.27 Score=39.78 Aligned_cols=30 Identities=17% Similarity=0.071 Sum_probs=26.4
Q ss_pred eeceEEEcCCCCCCeEEEEEEEEcCCCCCC
Q psy8771 251 ITTYYTVRNLSPYTEYEFYIIAVNNLGRGP 280 (904)
Q Consensus 251 ~~~~~~i~~L~p~~~Y~~~v~a~n~~g~s~ 280 (904)
....+.|.+++..+.+.|+|.|.|..|...
T Consensus 51 ~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~ 80 (88)
T cd04968 51 SGAVLKIPNIQFEDEGTYECEAENIKGKDT 80 (88)
T ss_pred eCCEEEECCCCcccCEEEEEEEEECCCcEE
Confidence 346799999999999999999999999753
No 234
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=93.77 E-value=0.38 Score=37.81 Aligned_cols=30 Identities=17% Similarity=0.091 Sum_probs=26.4
Q ss_pred eceEEEcCCCCCCeEEEEEEEEcCCCCCCC
Q psy8771 252 TTYYTVRNLSPYTEYEFYIIAVNNLGRGPP 281 (904)
Q Consensus 252 ~~~~~i~~L~p~~~Y~~~v~a~n~~g~s~~ 281 (904)
...+.|.++++.+.+.|+|.|.|..|....
T Consensus 41 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 70 (78)
T cd05743 41 YGTLTIRDVKESDQGAYTCEAINTRGMVFG 70 (78)
T ss_pred EEEEEECCCChHHCEEEEEEEEecCCEEEe
Confidence 467999999999999999999999997543
No 235
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=93.71 E-value=0.17 Score=39.41 Aligned_cols=65 Identities=14% Similarity=0.154 Sum_probs=40.1
Q ss_pred eEEEeecCCeEEEEEeCCCccceEEEEEEEeCCCCCCeEEeec-ceeceEEEcCCCCCCeEEEEEEEEcCCCCCC
Q psy8771 207 VKISEVTATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEISG-IITTYYTVRNLSPYTEYEFYIIAVNNLGRGP 280 (904)
Q Consensus 207 l~~~~~~~~sv~l~W~~~~~~~~~y~v~~~~~~~~~~~~~~~~-~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~s~ 280 (904)
|.+...+...-++.|...+..+.. ....+..... .....|.|.++++.+.+.|+|.|.|..|...
T Consensus 3 l~C~v~G~P~P~i~W~k~~~~i~~---------~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~ 68 (75)
T cd05892 3 LECQISAIPPPKIFWKRNNEMVQY---------NTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVAT 68 (75)
T ss_pred EEEEEEecCCCeEEEEECCEECcC---------CCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEE
Confidence 344444555667888876433310 0111111111 1124799999999999999999999998643
No 236
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=93.49 E-value=0.24 Score=40.34 Aligned_cols=28 Identities=14% Similarity=0.054 Sum_probs=25.4
Q ss_pred eceEEEcCCCCCCeEEEEEEEEcCCCCC
Q psy8771 252 TTYYTVRNLSPYTEYEFYIIAVNNLGRG 279 (904)
Q Consensus 252 ~~~~~i~~L~p~~~Y~~~v~a~n~~g~s 279 (904)
...|.|.++++.+.+.|+|.|.|..|..
T Consensus 55 ~~~L~I~~v~~~D~G~Y~C~A~N~~G~~ 82 (92)
T cd05866 55 RSRLTIYNANIEDAGIYRCQATDAKGQT 82 (92)
T ss_pred eeEEEEecCChHHCEEEEEEEEcCCCcE
Confidence 4579999999999999999999998864
No 237
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=93.42 E-value=0.28 Score=40.14 Aligned_cols=57 Identities=18% Similarity=0.251 Sum_probs=36.2
Q ss_pred cCCCeEEEEEEcc-CCC-CeEEEeeCCccccCCCCc----eeecceEEEEee-e-----cCCeEEEEEEEe
Q psy8771 119 LDSPLNLSCVAVG-SPM-PFVKWRKGQNIELTPDDK----LPVGRNVLTLDR-V-----TESENYTCIAAS 177 (904)
Q Consensus 119 ~g~~~~l~C~~~g-~p~-p~i~W~k~~~~~~~~~~~----~~~~~~~l~i~~-l-----~d~g~Y~c~a~n 177 (904)
.++.++|.|.|.| .|. ..|+|.++ |..+..+.. +..++ ++.+.. | +.+..|+|.+.-
T Consensus 15 ~~~~~tL~C~a~gFyP~~I~v~W~kn-g~~~~~~~~~~~~~~~~d-ty~~~S~L~vt~~~~~~~ysC~V~H 83 (96)
T cd07697 15 KQGQGIYLCLLENFFPDVIQVHWREG-NSPSILGSQKSEKDKDND-VYSTTSWLTVTKDSLGKKFRCIYKH 83 (96)
T ss_pred cCCCEEEEEEEEEEeCCCeEEEEEEC-CEECcCCeEeccEecCCC-EEEEEEEEEECchhCCCeEEEEEEE
Confidence 4577999999999 565 47899999 665543321 11233 555432 2 234569999875
No 238
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=93.33 E-value=0.52 Score=39.09 Aligned_cols=29 Identities=7% Similarity=0.123 Sum_probs=26.0
Q ss_pred eceEEEcCCCCCCeEEEEEEEEcCCCCCC
Q psy8771 252 TTYYTVRNLSPYTEYEFYIIAVNNLGRGP 280 (904)
Q Consensus 252 ~~~~~i~~L~p~~~Y~~~v~a~n~~g~s~ 280 (904)
...|.|.++++.+.+.|.|.|.|..|...
T Consensus 63 ~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~ 91 (98)
T cd05870 63 ESSLHIKDVKLSDSGRYDCEAASRIGGHQ 91 (98)
T ss_pred eeEEEEeeCCcCCCEEEEEEEeccCCcce
Confidence 35799999999999999999999999754
No 239
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=93.22 E-value=0.42 Score=39.36 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=25.4
Q ss_pred ceEEEcCCCCCCeEEEEEEEEcCCCCCC
Q psy8771 253 TYYTVRNLSPYTEYEFYIIAVNNLGRGP 280 (904)
Q Consensus 253 ~~~~i~~L~p~~~Y~~~v~a~n~~g~s~ 280 (904)
..+.|.++...+.+.|+|.|.|..|...
T Consensus 58 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 85 (95)
T cd05730 58 SEMTILDVDKLDEAEYTCIAENKAGEQE 85 (95)
T ss_pred CEEEECCCChhhCEEEEEEEEcCCCeEE
Confidence 5699999999999999999999999754
No 240
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=92.93 E-value=0.28 Score=39.17 Aligned_cols=68 Identities=4% Similarity=0.245 Sum_probs=43.8
Q ss_pred CCeEEEEEeCCCccceEEEEEEEeCCCCCCeEEeec-ceeceEEEcCCCCCCeEEEEEEEEcCCCCCCCCCCeEEe
Q psy8771 214 ATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEISG-IITTYYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVIT 288 (904)
Q Consensus 214 ~~sv~l~W~~~~~~~~~y~v~~~~~~~~~~~~~~~~-~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~s~~s~~~~~~ 288 (904)
.-.+++.|...+..+. +.. .+..+..+.+ .....|.|.+++..+.+.|+|.|.|..+....+..+.+.
T Consensus 14 ~l~~~~~W~~dg~~i~-----~~~--~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~V~ 82 (85)
T cd05853 14 SLDIVFTWSFNGHLID-----FQK--DGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLIVR 82 (85)
T ss_pred CCCcEEEEEECCEECc-----ccC--CCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEEEe
Confidence 3467788887654442 111 1222322221 233679999999999999999999999886655555543
No 241
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=92.85 E-value=0.44 Score=37.35 Aligned_cols=28 Identities=25% Similarity=0.261 Sum_probs=25.2
Q ss_pred ceEEEcCCCCCCeEEEEEEEEcCCCCCC
Q psy8771 253 TYYTVRNLSPYTEYEFYIIAVNNLGRGP 280 (904)
Q Consensus 253 ~~~~i~~L~p~~~Y~~~v~a~n~~g~s~ 280 (904)
..+.|.++.+.+.+.|.|.|.|..|...
T Consensus 38 ~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 65 (77)
T cd05760 38 RTLTLRSAGPDDSGLYYCCAHNAFGSVC 65 (77)
T ss_pred CEEEEeeCCcccCEEEEEEEEeCCCeEe
Confidence 5799999999999999999999999643
No 242
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=92.84 E-value=0.55 Score=39.85 Aligned_cols=28 Identities=29% Similarity=0.292 Sum_probs=24.4
Q ss_pred ceEEEcCCC-CCCeEEEEEEEEcCCCCCC
Q psy8771 253 TYYTVRNLS-PYTEYEFYIIAVNNLGRGP 280 (904)
Q Consensus 253 ~~~~i~~L~-p~~~Y~~~v~a~n~~g~s~ 280 (904)
..|+|.++. ..+.+.|+|.|.|..|...
T Consensus 69 s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~ 97 (109)
T cd05773 69 SILTIINVSAALDYALFTCTAHNSLGEDS 97 (109)
T ss_pred eEEEECcCCccCCCEEEEEEEEeCCccCc
Confidence 679999997 5889999999999999753
No 243
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=92.77 E-value=0.28 Score=38.18 Aligned_cols=28 Identities=18% Similarity=0.117 Sum_probs=25.2
Q ss_pred ceEEEcCCCCCCeEEEEEEEEcCCCCCC
Q psy8771 253 TYYTVRNLSPYTEYEFYIIAVNNLGRGP 280 (904)
Q Consensus 253 ~~~~i~~L~p~~~Y~~~v~a~n~~g~s~ 280 (904)
..+.|.++++.+.+.|+|.|.|..|...
T Consensus 41 ~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 68 (75)
T cd05744 41 ICLLIQNANKEDAGWYTVSAVNEAGVVS 68 (75)
T ss_pred EEEEECCCCcccCEEEEEEEEcCCCcEE
Confidence 4699999999999999999999998653
No 244
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=92.66 E-value=0.29 Score=37.83 Aligned_cols=28 Identities=21% Similarity=0.275 Sum_probs=25.6
Q ss_pred ceEEEcCCCCCCeEEEEEEEEcCCCCCC
Q psy8771 253 TYYTVRNLSPYTEYEFYIIAVNNLGRGP 280 (904)
Q Consensus 253 ~~~~i~~L~p~~~Y~~~v~a~n~~g~s~ 280 (904)
..+.|.++++.+.+.|+|.|.|..|...
T Consensus 39 g~L~I~~v~~~D~G~Y~C~A~N~~G~~~ 66 (73)
T cd05852 39 GSLEILNITKLDEGSYTCFAENNRGKAN 66 (73)
T ss_pred CEEEECcCChhHCEEEEEEEECCCCcee
Confidence 4699999999999999999999999764
No 245
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=92.54 E-value=0.42 Score=38.26 Aligned_cols=70 Identities=13% Similarity=0.094 Sum_probs=41.8
Q ss_pred eEEEeecC--CeEEEEEeCCCccceEEEEEEEeCCCCCCeEEeecceeceEEEcCCCCCCeEEEEEEEEcCCCCCCC
Q psy8771 207 VKISEVTA--TSVRLDWTYPSETLLYYVIQYKPKAANTPYSEISGIITTYYTVRNLSPYTEYEFYIIAVNNLGRGPP 281 (904)
Q Consensus 207 l~~~~~~~--~sv~l~W~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~s~~ 281 (904)
|.+...+. ..+.+.|..++........... .............|.|.++++.+.+.|+|.|.|..|....
T Consensus 6 L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~ 77 (84)
T cd05742 6 LNCTVLTELNEGVDFQWTYPGKKRGRGKSMVT-----RQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKE 77 (84)
T ss_pred EEEEEEeCCCccEEEEEecCCcccCCceEeec-----ccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEE
Confidence 44555555 5678889876433221111000 0000011123467999999999999999999999887543
No 246
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=92.50 E-value=0.28 Score=37.46 Aligned_cols=27 Identities=22% Similarity=0.217 Sum_probs=24.8
Q ss_pred ceEEEcCCCCCCeEEEEEEEEcCCCCC
Q psy8771 253 TYYTVRNLSPYTEYEFYIIAVNNLGRG 279 (904)
Q Consensus 253 ~~~~i~~L~p~~~Y~~~v~a~n~~g~s 279 (904)
..+.|.++++.+.+.|+|.|.|..|..
T Consensus 35 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 61 (69)
T cd05725 35 KSLKIRNVTAGDEGSYTCEAENMVGKI 61 (69)
T ss_pred CEEEECcCChhHCEEEEEEEEcCCCcE
Confidence 569999999999999999999999864
No 247
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=92.30 E-value=0.27 Score=37.81 Aligned_cols=29 Identities=17% Similarity=0.166 Sum_probs=25.8
Q ss_pred eceEEEcCCCCCCeEEEEEEEEcCCCCCC
Q psy8771 252 TTYYTVRNLSPYTEYEFYIIAVNNLGRGP 280 (904)
Q Consensus 252 ~~~~~i~~L~p~~~Y~~~v~a~n~~g~s~ 280 (904)
...+.|.++.+.+.+.|+|.|.|..|...
T Consensus 35 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 63 (71)
T cd05876 35 NKTLQLDNVLESDDGEYVCTAENSEGSAR 63 (71)
T ss_pred CCEEEEcccCHHhCEEEEEEEEcCCCeEE
Confidence 36799999999999999999999999643
No 248
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=92.19 E-value=30 Score=40.96 Aligned_cols=84 Identities=15% Similarity=0.135 Sum_probs=52.7
Q ss_pred CCCcEEEecCCCEEEEEecCCCCCCCCccEEEEEEEEEEccCCC----CccEEE----Eec------CcceEEecCC--C
Q psy8771 720 PQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSD----SEASIV----TLK------NQTSFVLDEL--K 783 (904)
Q Consensus 720 P~~l~~~~~~~~~v~l~W~~~~~~~~~g~~~~Y~v~~~~~~~~~----~~~~~~----~~~------~~~~~~i~~L--~ 783 (904)
..+|++.. ....|.|+|.+|-.+...|...+|.|.+...-.+. .....+ .++ ....+...+. +
T Consensus 759 ItDL~~~~-~~~~v~LsWTAPG~d~D~G~a~~y~ir~s~~~~~l~~~f~~a~~vn~~~~~P~~ags~e~~~f~~~~~~~~ 837 (863)
T TIGR00868 759 ITDLEAGF-QGDNIILTWTAPGDVLDHGRADRYIIRISTSILDLRDDFNDATQVNTTDLIPKEANSKEVFVFKPEGIPIE 837 (863)
T ss_pred ceeeEEee-cCCEEEEEeeCCCccCCCCccceEEEEecCCHHHHHhhhccccccccCCcCCCCCCceeEEEEeCCccccc
Confidence 35666643 55669999999988778899999999997642110 000000 011 2223334443 3
Q ss_pred CCceEEEEEEEeeCCCC-CCCC
Q psy8771 784 KWTEYRIWVLAGTSIGD-GPSS 804 (904)
Q Consensus 784 p~t~Y~~~V~a~~~~g~-g~~s 804 (904)
.++.|.|-|+|++..|. |..|
T Consensus 838 ~~~~~~~ai~a~d~~~~~s~~s 859 (863)
T TIGR00868 838 NGTDLFIAVQAIDKANLTSEVS 859 (863)
T ss_pred CCeEEEEEEEEEcccccccccc
Confidence 57899999999998763 4434
No 249
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=92.01 E-value=0.61 Score=36.92 Aligned_cols=29 Identities=14% Similarity=0.241 Sum_probs=25.9
Q ss_pred eceEEEcCCCCCCeEEEEEEEEcCCCCCC
Q psy8771 252 TTYYTVRNLSPYTEYEFYIIAVNNLGRGP 280 (904)
Q Consensus 252 ~~~~~i~~L~p~~~Y~~~v~a~n~~g~s~ 280 (904)
...+.|.++.+.+.+.|+|.|.|..|...
T Consensus 45 ~~~L~I~~~~~~D~G~YtC~A~N~~G~~~ 73 (81)
T cd04971 45 HGCLQFDNPTHVNNGNYTLVASNEYGQDS 73 (81)
T ss_pred EEEEEECCCCcccCeEEEEEEEeCCCCee
Confidence 35799999999999999999999999754
No 250
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=91.95 E-value=0.72 Score=35.96 Aligned_cols=30 Identities=17% Similarity=0.101 Sum_probs=26.4
Q ss_pred ceEEEcCCCCCCeEEEEEEEEcCCCCCCCC
Q psy8771 253 TYYTVRNLSPYTEYEFYIIAVNNLGRGPPS 282 (904)
Q Consensus 253 ~~~~i~~L~p~~~Y~~~v~a~n~~g~s~~s 282 (904)
..+.|.++++.+.+.|+|.|.|..|....+
T Consensus 39 ~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~ 68 (76)
T cd05736 39 SELHISNVRYEDTGAYTCIAKNEAGVDEDI 68 (76)
T ss_pred CEEEECcCCcccCEEEEEEEEcCCCCcceE
Confidence 569999999999999999999999976533
No 251
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=91.81 E-value=0.35 Score=37.82 Aligned_cols=27 Identities=15% Similarity=0.102 Sum_probs=24.8
Q ss_pred ceEEEcCCCCCCeEEEEEEEEcCCCCC
Q psy8771 253 TYYTVRNLSPYTEYEFYIIAVNNLGRG 279 (904)
Q Consensus 253 ~~~~i~~L~p~~~Y~~~v~a~n~~g~s 279 (904)
..+.|.++++.+.+.|+|.|.|..|..
T Consensus 41 ~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 67 (76)
T cd05867 41 GALILTDVQPSDTAVYQCEARNRHGNL 67 (76)
T ss_pred CEEEECCCChhhCEEEEEEEECCCCeE
Confidence 569999999999999999999998864
No 252
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=91.79 E-value=0.29 Score=38.22 Aligned_cols=30 Identities=10% Similarity=-0.001 Sum_probs=25.7
Q ss_pred ceEEEcCCCCCCeEEEEEEEEcCCCCCCCC
Q psy8771 253 TYYTVRNLSPYTEYEFYIIAVNNLGRGPPS 282 (904)
Q Consensus 253 ~~~~i~~L~p~~~Y~~~v~a~n~~g~s~~s 282 (904)
..+.|.++++.+.+.|+|.|.|..|....+
T Consensus 41 ~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~ 70 (76)
T cd05868 41 DTIIFSKVQERSSAVYQCNASNEYGYLLAN 70 (76)
T ss_pred CEEEECCCCHhhCEEEEEEEEcCCCEEEEE
Confidence 468899999999999999999999975433
No 253
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=91.73 E-value=0.97 Score=37.06 Aligned_cols=58 Identities=19% Similarity=0.382 Sum_probs=36.0
Q ss_pred cCCCeEEEEEEcc-CCC-CeEEEeeCCccccCCCC----ceeecceEEEEee-e----c---CCeEEEEEEEec
Q psy8771 119 LDSPLNLSCVAVG-SPM-PFVKWRKGQNIELTPDD----KLPVGRNVLTLDR-V----T---ESENYTCIAASV 178 (904)
Q Consensus 119 ~g~~~~l~C~~~g-~p~-p~i~W~k~~~~~~~~~~----~~~~~~~~l~i~~-l----~---d~g~Y~c~a~n~ 178 (904)
.++.++|.|.+.| .|. ..|+|.|+ |.. ..+. ....+++.+.+.. | . .+..|+|.+...
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~-g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~ 86 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSG-SNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHP 86 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeEC-CEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeC
Confidence 4567999999999 564 57899999 554 2221 1111245544432 2 2 367799998753
No 254
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=91.64 E-value=0.74 Score=35.72 Aligned_cols=28 Identities=14% Similarity=0.158 Sum_probs=25.4
Q ss_pred eceEEEcCCCCCCeEEEEEEEEcCCCCC
Q psy8771 252 TTYYTVRNLSPYTEYEFYIIAVNNLGRG 279 (904)
Q Consensus 252 ~~~~~i~~L~p~~~Y~~~v~a~n~~g~s 279 (904)
...+.|.++++.+.+.|+|.|.|..|..
T Consensus 42 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 69 (75)
T cd05750 42 NSELQINKAKLADSGEYTCVVENILGND 69 (75)
T ss_pred eEEEEEccCCcccCeEEEEEEEEcCCce
Confidence 4679999999999999999999999864
No 255
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=91.64 E-value=0.93 Score=37.03 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=25.3
Q ss_pred eceEEEcCCCCCCeEEEEEEEEcCCCCC
Q psy8771 252 TTYYTVRNLSPYTEYEFYIIAVNNLGRG 279 (904)
Q Consensus 252 ~~~~~i~~L~p~~~Y~~~v~a~n~~g~s 279 (904)
...+.|.++.+.+.+.|+|.|.|..|..
T Consensus 57 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 84 (92)
T cd05737 57 YASLTIKGVSSEDSGKYGIVVKNKYGGE 84 (92)
T ss_pred EEEEEEccCChhhCEEEEEEEEECCCcc
Confidence 3579999999999999999999999864
No 256
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=91.53 E-value=0.51 Score=37.85 Aligned_cols=31 Identities=13% Similarity=0.003 Sum_probs=26.6
Q ss_pred eceEEEcCCCCCCeEEEEEEEEcCCCCCCCC
Q psy8771 252 TTYYTVRNLSPYTEYEFYIIAVNNLGRGPPS 282 (904)
Q Consensus 252 ~~~~~i~~L~p~~~Y~~~v~a~n~~g~s~~s 282 (904)
...+.|.+++..+.+.|+|.|.|..|....+
T Consensus 46 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~ 76 (85)
T cd04970 46 NGDLMIRNAQLKHAGKYTCTAQTVVDSLSAS 76 (85)
T ss_pred cceEEEccCCHHhCeeeEEEEecCCCcEEEE
Confidence 4679999999999999999999998865433
No 257
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=91.44 E-value=0.34 Score=36.62 Aligned_cols=27 Identities=4% Similarity=0.097 Sum_probs=24.8
Q ss_pred ceEEEcCCCCCCeEEEEEEEEcCCCCC
Q psy8771 253 TYYTVRNLSPYTEYEFYIIAVNNLGRG 279 (904)
Q Consensus 253 ~~~~i~~L~p~~~Y~~~v~a~n~~g~s 279 (904)
..+.|.++...+.+.|+|.|.|..|..
T Consensus 31 ~~L~i~~v~~~D~G~YtC~a~N~~g~~ 57 (67)
T cd05863 31 HSLQIKDVTEASAGTYTLVLWNSAAGL 57 (67)
T ss_pred CEEEECCCCHHHCEEEEEEEEECCccE
Confidence 679999999999999999999998853
No 258
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=91.35 E-value=0.64 Score=36.15 Aligned_cols=28 Identities=11% Similarity=0.044 Sum_probs=24.9
Q ss_pred ceEEEcCCCCCCeEEEEEEEEcCCCCCC
Q psy8771 253 TYYTVRNLSPYTEYEFYIIAVNNLGRGP 280 (904)
Q Consensus 253 ~~~~i~~L~p~~~Y~~~v~a~n~~g~s~ 280 (904)
..+.|.++++.+.+.|+|.|.|..|...
T Consensus 40 ~~L~I~~~~~~D~G~Y~C~A~N~~G~~~ 67 (75)
T cd05763 40 DVFFIVDVKIEDTGVYSCTAQNTAGSIS 67 (75)
T ss_pred CEEEEeeCCcccCEEEEEEEEcCCCEEE
Confidence 4689999999999999999999988643
No 259
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=91.34 E-value=0.41 Score=39.52 Aligned_cols=29 Identities=14% Similarity=0.178 Sum_probs=26.0
Q ss_pred eceEEEcCCCCCCeEEEEEEEEcCCCCCC
Q psy8771 252 TTYYTVRNLSPYTEYEFYIIAVNNLGRGP 280 (904)
Q Consensus 252 ~~~~~i~~L~p~~~Y~~~v~a~n~~g~s~ 280 (904)
...+.|.+++..+.+.|.|.|.|..|...
T Consensus 61 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 89 (96)
T cd05732 61 VSSLTLKDVQLTDAGRYDCEASNRIGGDQ 89 (96)
T ss_pred EEEEEECcCCcCcCEEeEEEEEeCCCCcE
Confidence 46799999999999999999999999753
No 260
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=91.32 E-value=1.3 Score=37.26 Aligned_cols=62 Identities=15% Similarity=0.186 Sum_probs=41.6
Q ss_pred eEEecCCCeEEEEEEccCCC---CeEEEeeCCccccC--------------CCCceee------cceEEEEeee--cCCe
Q psy8771 115 LEVMLDSPLNLSCVAVGSPM---PFVKWRKGQNIELT--------------PDDKLPV------GRNVLTLDRV--TESE 169 (904)
Q Consensus 115 ~~~~~g~~~~l~C~~~g~p~---p~i~W~k~~~~~~~--------------~~~~~~~------~~~~l~i~~l--~d~g 169 (904)
..+..|..++|.|+++|.-. -.+.|.|.....++ ...|+.. +.-.|.|.+| +|.+
T Consensus 8 ~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DTa 87 (115)
T cd05721 8 VLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQTD 87 (115)
T ss_pred eEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHCe
Confidence 77788999999999987544 35789984222210 1122221 2237999999 6999
Q ss_pred EEEEEEE
Q psy8771 170 NYTCIAA 176 (904)
Q Consensus 170 ~Y~c~a~ 176 (904)
.|.|..+
T Consensus 88 ~Y~Ca~e 94 (115)
T cd05721 88 IYFCKIE 94 (115)
T ss_pred EEEEEee
Confidence 9999763
No 261
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=91.22 E-value=0.44 Score=36.58 Aligned_cols=28 Identities=25% Similarity=0.170 Sum_probs=24.1
Q ss_pred ceEEEcCCCCCCeEEEEEEEEcCCCCCC
Q psy8771 253 TYYTVRNLSPYTEYEFYIIAVNNLGRGP 280 (904)
Q Consensus 253 ~~~~i~~L~p~~~Y~~~v~a~n~~g~s~ 280 (904)
..+.|.++++.+.+.|+|.|.|..|...
T Consensus 37 ~~l~i~~v~~~D~G~Y~C~A~N~~G~~~ 64 (71)
T cd05723 37 HNLQVLGLVKSDEGFYQCIAENDVGNVQ 64 (71)
T ss_pred CCEEEEcCCcccCEEEEEEEEcCCCEEE
Confidence 3477889999999999999999998754
No 262
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=91.22 E-value=0.84 Score=35.95 Aligned_cols=27 Identities=7% Similarity=0.126 Sum_probs=24.1
Q ss_pred ceEEEcCCCCCCeEEEEEEEEcCCCCC
Q psy8771 253 TYYTVRNLSPYTEYEFYIIAVNNLGRG 279 (904)
Q Consensus 253 ~~~~i~~L~p~~~Y~~~v~a~n~~g~s 279 (904)
..+.|.++++.+.+.|+|.|.|..|..
T Consensus 45 ~~L~I~~~~~~DsG~Y~C~a~n~~g~~ 71 (79)
T cd04973 45 EEVQIKDAVPRDSGLYACVTSSPSGSD 71 (79)
T ss_pred CEEEECCCChhhCEEEEEEEeCCCCcc
Confidence 468999999999999999999988753
No 263
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=91.09 E-value=0.45 Score=36.94 Aligned_cols=28 Identities=14% Similarity=0.125 Sum_probs=25.3
Q ss_pred ceEEEcCCCCCCeEEEEEEEEcCCCCCC
Q psy8771 253 TYYTVRNLSPYTEYEFYIIAVNNLGRGP 280 (904)
Q Consensus 253 ~~~~i~~L~p~~~Y~~~v~a~n~~g~s~ 280 (904)
..+.|.++++.+.+.|+|.|.|..|...
T Consensus 40 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~ 67 (74)
T cd05745 40 GTLRISRVALHDQGQYECQAVNIVGSQR 67 (74)
T ss_pred CeEEEeeCCHHhCEEEEEEEEeCCCcee
Confidence 5799999999999999999999998643
No 264
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=90.89 E-value=0.92 Score=37.03 Aligned_cols=28 Identities=14% Similarity=0.217 Sum_probs=25.3
Q ss_pred ceEEEcCCCCCCeEEEEEEEEcCCCCCC
Q psy8771 253 TYYTVRNLSPYTEYEFYIIAVNNLGRGP 280 (904)
Q Consensus 253 ~~~~i~~L~p~~~Y~~~v~a~n~~g~s~ 280 (904)
..+.|.++++.+.+.|+|.|.|..|...
T Consensus 58 ~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 85 (92)
T cd05891 58 ASLTIKGVTSEDSGKYSINVKNKYGGET 85 (92)
T ss_pred EEEEECCCChhhCEEEEEEEEeCCCcee
Confidence 4799999999999999999999998754
No 265
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=90.72 E-value=1.3 Score=36.00 Aligned_cols=35 Identities=11% Similarity=-0.017 Sum_probs=28.4
Q ss_pred ceEEEcCCCCCCeEEEEEEEEcCCCCCCCCCCeEE
Q psy8771 253 TYYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVI 287 (904)
Q Consensus 253 ~~~~i~~L~p~~~Y~~~v~a~n~~g~s~~s~~~~~ 287 (904)
..++|.++++.+.+.|.|.|.|..|.......+.+
T Consensus 47 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 81 (90)
T cd05726 47 GDLTITNVQRSDVGYYICQTLNVAGSILTKAYLEV 81 (90)
T ss_pred CeEEEeeCChhhCEEEEEEEEcCCCceEEEEEEEE
Confidence 46999999999999999999999997554433433
No 266
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=90.64 E-value=0.46 Score=37.08 Aligned_cols=29 Identities=17% Similarity=0.041 Sum_probs=25.7
Q ss_pred eceEEEcCCCCCCeEEEEEEEEcCCCCCC
Q psy8771 252 TTYYTVRNLSPYTEYEFYIIAVNNLGRGP 280 (904)
Q Consensus 252 ~~~~~i~~L~p~~~Y~~~v~a~n~~g~s~ 280 (904)
...+.|.++++.+.+.|+|.|.|..|...
T Consensus 40 ~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~ 68 (76)
T cd04978 40 GGTLILSNVQPNDTAVYQCNASNVHGYLL 68 (76)
T ss_pred CCEEEECCCChhhCEEEEEEEEccCCeEE
Confidence 36799999999999999999999988753
No 267
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=90.59 E-value=0.94 Score=37.30 Aligned_cols=28 Identities=14% Similarity=0.080 Sum_probs=24.6
Q ss_pred ceEEEcCCCCCCeEEEEEEEEcCC-CCCC
Q psy8771 253 TYYTVRNLSPYTEYEFYIIAVNNL-GRGP 280 (904)
Q Consensus 253 ~~~~i~~L~p~~~Y~~~v~a~n~~-g~s~ 280 (904)
..|.|.++++.+.+.|+|.|.|.. |.+.
T Consensus 60 ~~L~I~~v~~~D~G~YtC~A~N~~~g~~~ 88 (96)
T cd05865 60 STLTIYNANIDDAGIYKCVVSNEDEGESE 88 (96)
T ss_pred eEEEEeccChhhCEEEEEEEEcCCCCcEE
Confidence 679999999999999999999997 5543
No 268
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=90.54 E-value=0.78 Score=37.92 Aligned_cols=29 Identities=17% Similarity=0.269 Sum_probs=25.8
Q ss_pred eceEEEcCCCCCCeEEEEEEEEcCCCCCC
Q psy8771 252 TTYYTVRNLSPYTEYEFYIIAVNNLGRGP 280 (904)
Q Consensus 252 ~~~~~i~~L~p~~~Y~~~v~a~n~~g~s~ 280 (904)
...+.|.+++..+.+.|+|.|.|..|...
T Consensus 62 ~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~ 90 (97)
T cd05869 62 VSSLTLKYIQYTDAGEYLCTASNTIGQDS 90 (97)
T ss_pred EEEEEEecCccCcCEEEEEEEecCCCCee
Confidence 35799999999999999999999999753
No 269
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=90.51 E-value=1.2 Score=33.57 Aligned_cols=45 Identities=20% Similarity=0.266 Sum_probs=27.7
Q ss_pred eeeeeeec-CCceEEecCCCeeEEEEcCCCCCcEEEEEEEEEecCCCC
Q psy8771 836 NFKGGYLN-DPMRFDVSDGGALELNVTGLQPDTIYTIQVAALTRKGDG 882 (904)
Q Consensus 836 ~~~~~~~~-~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~a~n~~G~g 882 (904)
.+.|.+.+ +..+... ......+.+++|.|| .|+|+|+|.+..|..
T Consensus 9 ~Y~Y~l~g~d~~W~~~-~~~~~~~~~~~L~~G-~Y~l~V~a~~~~~~~ 54 (66)
T PF07495_consen 9 RYRYRLEGFDDEWITL-GSYSNSISYTNLPPG-KYTLEVRAKDNNGKW 54 (66)
T ss_dssp EEEEEEETTESSEEEE-SSTS-EEEEES--SE-EEEEEEEEEETTS-B
T ss_pred EEEEEEECCCCeEEEC-CCCcEEEEEEeCCCE-EEEEEEEEECCCCCc
Confidence 34454443 3444443 222239999999999 899999999988754
No 270
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=90.31 E-value=0.46 Score=45.72 Aligned_cols=46 Identities=17% Similarity=0.281 Sum_probs=38.6
Q ss_pred CCeEEEeeCCccccCCCCceee-cceEEEEeee--cCCeEEEEEEEecC
Q psy8771 134 MPFVKWRKGQNIELTPDDKLPV-GRNVLTLDRV--TESENYTCIAASVL 179 (904)
Q Consensus 134 ~p~i~W~k~~~~~~~~~~~~~~-~~~~l~i~~l--~d~g~Y~c~a~n~~ 179 (904)
-|...|..++|..+..+.++.+ ..|.|.+.+. +++|.|+|++....
T Consensus 12 DP~y~W~GP~g~~l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 12 DPTYLWTGPNGKPLSGNSYVNITETGKLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CCceEEECCCCcccCCCCeEEEccCceEEeeccccccCCceEEEEEEEe
Confidence 4678999987888888888887 6789999999 69999999987533
No 271
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=90.28 E-value=1.1 Score=36.49 Aligned_cols=27 Identities=15% Similarity=0.078 Sum_probs=25.0
Q ss_pred ceEEEcCCCCCCeEEEEEEEEcCCCCC
Q psy8771 253 TYYTVRNLSPYTEYEFYIIAVNNLGRG 279 (904)
Q Consensus 253 ~~~~i~~L~p~~~Y~~~v~a~n~~g~s 279 (904)
..+.|.+++..+.+.|+|.|.|..|..
T Consensus 55 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 81 (91)
T cd05740 55 RTLTFNNVTRSDTGHYQCEASNEVSNM 81 (91)
T ss_pred CEEEECcCChhhCEEEEEEEEcCCCCE
Confidence 579999999999999999999999864
No 272
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=90.18 E-value=0.99 Score=35.17 Aligned_cols=29 Identities=14% Similarity=0.176 Sum_probs=25.7
Q ss_pred eeceEEEcCCCCCCeEEEEEEEEcCCCCC
Q psy8771 251 ITTYYTVRNLSPYTEYEFYIIAVNNLGRG 279 (904)
Q Consensus 251 ~~~~~~i~~L~p~~~Y~~~v~a~n~~g~s 279 (904)
....|.|.++.+.+.+.|+|.|.|..|..
T Consensus 42 ~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~ 70 (76)
T cd05895 42 KSSELQISKASLADNGEYKCMVSSKLGND 70 (76)
T ss_pred cEEEEEECcCCcccCEEEEEEEEeCCCce
Confidence 34679999999999999999999999864
No 273
>PF09067 EpoR_lig-bind: Erythropoietin receptor, ligand binding; InterPro: IPR015152 Members of this entry include the growth hormone and erythropoietin receptors. The latter interacts with erythropoietin (EPO), with subsequent initiation of the downstream chain of events associated with binding of EPO to the receptor, including EPO-induced erythroblast proliferation and differentiation through induction of the JAK2/STAT5 signalling cascade. The domain adopts a secondary structure composed of a short amino-terminal helix, followed by two beta-sandwich regions []. ; PDB: 3NCB_B 3NCF_B 3NCE_B 3N0P_B 3NCC_B 1BP3_B 3N06_B 3MZG_B 3D48_R 1F6F_C ....
Probab=90.12 E-value=0.91 Score=37.73 Aligned_cols=79 Identities=19% Similarity=0.377 Sum_probs=55.3
Q ss_pred CCCCCCCeEEEecCCceEEEEecCCCCCCCceeeEEEEEEeCCCCCCcceEEEee---cCceE-----EEEc--CCCCCC
Q psy8771 481 PGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVV---DNNQL-----TTIS--DLTPHT 550 (904)
Q Consensus 481 p~~~p~~l~v~~~~~~~~~l~W~~p~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~---~~~~~-----~~~~--~L~p~t 550 (904)
|+..|.++.....+...++.-|++....+.. ..|.+.|.... ..|+.-.. ....+ +.+. +..-.+
T Consensus 7 ~p~~P~~~~C~S~~~etftC~W~~g~~~~l~-~~y~L~Y~~~~----~~~~eCp~~~~~~~ns~~~~~C~F~~~~t~lf~ 81 (104)
T PF09067_consen 7 PPEKPENLKCFSREMETFTCFWEPGSEGNLP-TNYTLFYKKEG----EEWKECPDYSTSGPNSTVRHICYFPKSDTSLFV 81 (104)
T ss_dssp HCCCCEEEEEEBSSSS-EEEEEEEESSSTST-CEEEEEEEETT----SEEEEESESSTTETTEEEEEEEEE-CCGCSSSS
T ss_pred CCCCCccCccCCCCCCcEEEEeeCCCCCCCC-CcEEEEEEeCC----CCCccCCCeEecCCCCceeEEEEcCCCCeEEEE
Confidence 5678899999998989999999997654433 34999999875 23333222 12223 4454 778889
Q ss_pred eEEEEEEEEeCCCC
Q psy8771 551 IYTIRVQAFTSVGP 564 (904)
Q Consensus 551 ~Y~~~V~a~~~~g~ 564 (904)
.|.|+|.+.|..|.
T Consensus 82 ~y~i~V~a~~~~~~ 95 (104)
T PF09067_consen 82 PYCIQVEATNALGS 95 (104)
T ss_dssp EEEEEEEEEETTEE
T ss_pred EEEEEEEeccCCCc
Confidence 99999999998763
No 274
>PF09067 EpoR_lig-bind: Erythropoietin receptor, ligand binding; InterPro: IPR015152 Members of this entry include the growth hormone and erythropoietin receptors. The latter interacts with erythropoietin (EPO), with subsequent initiation of the downstream chain of events associated with binding of EPO to the receptor, including EPO-induced erythroblast proliferation and differentiation through induction of the JAK2/STAT5 signalling cascade. The domain adopts a secondary structure composed of a short amino-terminal helix, followed by two beta-sandwich regions []. ; PDB: 3NCB_B 3NCF_B 3NCE_B 3N0P_B 3NCC_B 1BP3_B 3N06_B 3MZG_B 3D48_R 1F6F_C ....
Probab=90.02 E-value=1.4 Score=36.57 Aligned_cols=78 Identities=18% Similarity=0.206 Sum_probs=55.3
Q ss_pred CCCCCCcceEEEeecCCeEEEEEeCC--CccceEEEEEEEeCCCCCCeEEee---cceece-----EEEc--CCCCCCeE
Q psy8771 199 TLPVAPLDVKISEVTATSVRLDWTYP--SETLLYYVIQYKPKAANTPYSEIS---GIITTY-----YTVR--NLSPYTEY 266 (904)
Q Consensus 199 ~~P~~p~~l~~~~~~~~sv~l~W~~~--~~~~~~y~v~~~~~~~~~~~~~~~---~~~~~~-----~~i~--~L~p~~~Y 266 (904)
.+|..|.++.+.......++|-|+++ ...-..|.+.|...+ ..+..-. .....+ +.+. ++.-...|
T Consensus 6 ~~p~~P~~~~C~S~~~etftC~W~~g~~~~l~~~y~L~Y~~~~--~~~~eCp~~~~~~~ns~~~~~C~F~~~~t~lf~~y 83 (104)
T PF09067_consen 6 LPPEKPENLKCFSREMETFTCFWEPGSEGNLPTNYTLFYKKEG--EEWKECPDYSTSGPNSTVRHICYFPKSDTSLFVPY 83 (104)
T ss_dssp HHCCCCEEEEEEBSSSS-EEEEEEEESSSTSTCEEEEEEEETT--SEEEEESESSTTETTEEEEEEEEE-CCGCSSSSEE
T ss_pred cCCCCCccCccCCCCCCcEEEEeeCCCCCCCCCcEEEEEEeCC--CCCccCCCeEecCCCCceeEEEEcCCCCeEEEEEE
Confidence 36788999999999999999999987 222344999999864 4444421 111123 5554 88999999
Q ss_pred EEEEEEEcCCCC
Q psy8771 267 EFYIIAVNNLGR 278 (904)
Q Consensus 267 ~~~v~a~n~~g~ 278 (904)
.++|.|.|..|.
T Consensus 84 ~i~V~a~~~~~~ 95 (104)
T PF09067_consen 84 CIQVEATNALGS 95 (104)
T ss_dssp EEEEEEEETTEE
T ss_pred EEEEEeccCCCc
Confidence 999999998774
No 275
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=89.95 E-value=0.41 Score=36.69 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=24.6
Q ss_pred ceEEEcCCCCCCeEEEEEEEEcCCCCC
Q psy8771 253 TYYTVRNLSPYTEYEFYIIAVNNLGRG 279 (904)
Q Consensus 253 ~~~~i~~L~p~~~Y~~~v~a~n~~g~s 279 (904)
..+.|.+++..+.+.|+|.|.|..|..
T Consensus 36 ~~L~i~~v~~~D~G~Y~C~a~N~~G~~ 62 (71)
T cd05731 36 KTLKIDNVSEEDDGEYRCTASNSLGSA 62 (71)
T ss_pred CEEEECCCCHHHCEEEEEEEEeCCceE
Confidence 579999999999999999999999864
No 276
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=89.29 E-value=0.71 Score=35.16 Aligned_cols=28 Identities=18% Similarity=0.373 Sum_probs=25.4
Q ss_pred ceEEEcCCCCCCeEEEEEEEEcCCCCCC
Q psy8771 253 TYYTVRNLSPYTEYEFYIIAVNNLGRGP 280 (904)
Q Consensus 253 ~~~~i~~L~p~~~Y~~~v~a~n~~g~s~ 280 (904)
..+.|.++++.+.+.|+|.|.|..|...
T Consensus 36 ~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 63 (69)
T cd05746 36 GYLAIRDVGVADQGRYECVARNTIGYAS 63 (69)
T ss_pred CEEEECcCChhhCEEEEEEEECCCCcEE
Confidence 5799999999999999999999999753
No 277
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=89.18 E-value=1.1 Score=37.37 Aligned_cols=28 Identities=11% Similarity=0.059 Sum_probs=25.5
Q ss_pred eceEEEcCCCCCCeEEEEEEEEcCCCCC
Q psy8771 252 TTYYTVRNLSPYTEYEFYIIAVNNLGRG 279 (904)
Q Consensus 252 ~~~~~i~~L~p~~~Y~~~v~a~n~~g~s 279 (904)
...|.|..+++.+.+.|+|.|.|..|..
T Consensus 64 ~~~L~i~~v~~~D~G~Ytc~A~N~~G~~ 91 (101)
T cd04975 64 VSELKLVRLKESEAGTYTFLASNSDASK 91 (101)
T ss_pred EEEEEEeecCHhhCeeEEEEEECCCccE
Confidence 3679999999999999999999999864
No 278
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=89.08 E-value=2.5 Score=33.14 Aligned_cols=29 Identities=14% Similarity=0.201 Sum_probs=25.9
Q ss_pred eceEEEcCCCCCCeEEEEEEEEcCCCCCC
Q psy8771 252 TTYYTVRNLSPYTEYEFYIIAVNNLGRGP 280 (904)
Q Consensus 252 ~~~~~i~~L~p~~~Y~~~v~a~n~~g~s~ 280 (904)
...+.|.+..+.+.+.|+|.|.|..|...
T Consensus 43 ~~~L~i~~~~~~D~G~YtC~A~N~~G~~~ 71 (79)
T cd05855 43 HGCLQLDNPTHLNNGIYTLVAKNEYGEDE 71 (79)
T ss_pred EEEEEECCCCcccCEEEEEEEEcCCcccc
Confidence 35799999999999999999999999754
No 279
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=89.02 E-value=1.2 Score=34.44 Aligned_cols=27 Identities=15% Similarity=0.179 Sum_probs=24.3
Q ss_pred ceEEEcCCCCCCeEEEEEEEEcCCCCC
Q psy8771 253 TYYTVRNLSPYTEYEFYIIAVNNLGRG 279 (904)
Q Consensus 253 ~~~~i~~L~p~~~Y~~~v~a~n~~g~s 279 (904)
..+.|.+++..+.+.|+|.|.|..|..
T Consensus 38 g~L~i~~~~~~D~G~Y~C~a~N~~G~~ 64 (74)
T cd05738 38 GALQIENSEESDQGKYECVATNSAGTR 64 (74)
T ss_pred cEEEECCCChhhCEEEEEEEECCCCce
Confidence 458999999999999999999999863
No 280
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=88.91 E-value=0.9 Score=36.38 Aligned_cols=27 Identities=11% Similarity=0.144 Sum_probs=24.4
Q ss_pred ceEEEcCCCCCCeEEEEEEEEcCCCCC
Q psy8771 253 TYYTVRNLSPYTEYEFYIIAVNNLGRG 279 (904)
Q Consensus 253 ~~~~i~~L~p~~~Y~~~v~a~n~~g~s 279 (904)
..+.|.++.+.+.+.|+|.|.|..|..
T Consensus 51 ~~l~i~~~~~~D~G~Y~C~a~N~~G~~ 77 (85)
T cd05857 51 WSLIMESVVPSDKGNYTCVVENEYGSI 77 (85)
T ss_pred eEEEEccCCcccCEEEEEEEEeCCCEE
Confidence 468899999999999999999999864
No 281
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=88.74 E-value=2.1 Score=35.11 Aligned_cols=27 Identities=15% Similarity=0.170 Sum_probs=22.4
Q ss_pred ceEEEcCCC-CCCeEEEEEEEEcCCCCC
Q psy8771 253 TYYTVRNLS-PYTEYEFYIIAVNNLGRG 279 (904)
Q Consensus 253 ~~~~i~~L~-p~~~Y~~~v~a~n~~g~s 279 (904)
..+.|.++. ..+.+.|+|.|.|..|..
T Consensus 58 g~L~I~~~~~~~D~G~Y~C~A~N~~G~~ 85 (94)
T cd05850 58 GNLVINNPQKARDAGSYQCLAINRCGTV 85 (94)
T ss_pred CeEEEccCCccCcCEEEEEEEEcCcCcE
Confidence 467887765 589999999999999964
No 282
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=88.74 E-value=0.95 Score=34.95 Aligned_cols=28 Identities=18% Similarity=0.221 Sum_probs=25.3
Q ss_pred ceEEEcCCCCCCeEEEEEEEEcCCCCCC
Q psy8771 253 TYYTVRNLSPYTEYEFYIIAVNNLGRGP 280 (904)
Q Consensus 253 ~~~~i~~L~p~~~Y~~~v~a~n~~g~s~ 280 (904)
..+.|.++.+.+.+.|+|.|.|..|...
T Consensus 39 ~~L~i~~v~~~D~G~Y~C~a~N~~G~~~ 66 (73)
T cd04969 39 GSLEILNVTKSDEGKYTCFAENFFGKAN 66 (73)
T ss_pred CeEEEccCChhHCEEEEEEEECCCCceE
Confidence 4699999999999999999999998754
No 283
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=88.65 E-value=0.3 Score=39.70 Aligned_cols=30 Identities=17% Similarity=0.185 Sum_probs=26.5
Q ss_pred ceeceEEEcCCCCCCeEEEEEEEEcCCCCC
Q psy8771 250 IITTYYTVRNLSPYTEYEFYIIAVNNLGRG 279 (904)
Q Consensus 250 ~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~s 279 (904)
.....|.|.++...+.+.|+|.|.|..|..
T Consensus 53 ~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~ 82 (90)
T PF07679_consen 53 GGSSSLTIKNVTREDAGTYTCVASNSSGEA 82 (90)
T ss_dssp TTEEEEEESSESGGGSEEEEEEEEETTEEE
T ss_pred cceeEEccCCCChhhCEEEEEEEEECCCEE
Confidence 356889999999999999999999997754
No 284
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=88.51 E-value=0.62 Score=37.36 Aligned_cols=27 Identities=19% Similarity=0.080 Sum_probs=24.6
Q ss_pred ceEEEcCCCCCCeEEEEEEEEcCCCCC
Q psy8771 253 TYYTVRNLSPYTEYEFYIIAVNNLGRG 279 (904)
Q Consensus 253 ~~~~i~~L~p~~~Y~~~v~a~n~~g~s 279 (904)
..+.|.+++..+.+.|+|.|.|..|..
T Consensus 51 ~~L~i~~~~~~D~G~Y~C~a~N~~G~~ 77 (85)
T cd05728 51 GDLRITKLSLSDSGMYQCVAENKHGTI 77 (85)
T ss_pred CEEEEeeCCHHHCEEEEEEEECCCCeE
Confidence 569999999999999999999999864
No 285
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=88.39 E-value=2.4 Score=34.34 Aligned_cols=30 Identities=23% Similarity=0.221 Sum_probs=26.7
Q ss_pred ceEEEcCCCCCCeEEEEEEEEcCCCCCCCC
Q psy8771 253 TYYTVRNLSPYTEYEFYIIAVNNLGRGPPS 282 (904)
Q Consensus 253 ~~~~i~~L~p~~~Y~~~v~a~n~~g~s~~s 282 (904)
..+.|.+++..+.+.|+|.|.|..|....+
T Consensus 55 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~ 84 (90)
T cd05858 55 EVLYLRNVTFEDAGEYTCLAGNSIGISHHS 84 (90)
T ss_pred eEEEEccCCHHHCEEEEEEEEeCCCcccce
Confidence 579999999999999999999999976443
No 286
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=87.96 E-value=2.2 Score=34.72 Aligned_cols=62 Identities=16% Similarity=0.263 Sum_probs=36.7
Q ss_pred ecCCCeEEEEEEcc-CCC--CeEEEeeCCccccCCCCce------eec--ceEEEEe-eecC-CeEEEEEEEecCc
Q psy8771 118 MLDSPLNLSCVAVG-SPM--PFVKWRKGQNIELTPDDKL------PVG--RNVLTLD-RVTE-SENYTCIAASVLG 180 (904)
Q Consensus 118 ~~g~~~~l~C~~~g-~p~--p~i~W~k~~~~~~~~~~~~------~~~--~~~l~i~-~l~d-~g~Y~c~a~n~~g 180 (904)
.+|+++++.|.+.| .|. .+|.|+++ ...+....-. ... ...+.+. +.+| +..|.|+|.=..+
T Consensus 13 ~~G~~vtv~C~v~~v~P~~~l~v~LlkG-~~~l~~~~f~~~~~~ks~~~~~~~vtftptreD~g~~fsC~A~L~l~ 87 (99)
T cd07689 13 EEGKPVTVKCEVPDVYPFDRLEIELLKG-ETLLPSKSFLEDMDKKSLETKSLEVTFTPTIEDIGKVLVCRAKLHID 87 (99)
T ss_pred cCCceEEEEEEecCcccCCceEEEEecC-cceecccccccccccCCCCCcceeEEEecchhhCCcEEEEEEEEeec
Confidence 68999999999985 565 57999987 4443321100 001 1122222 2344 4589999975443
No 287
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=87.85 E-value=1 Score=34.86 Aligned_cols=27 Identities=19% Similarity=0.085 Sum_probs=24.2
Q ss_pred ceEEEcCCCCCCeEEEEEEEEcCCCCC
Q psy8771 253 TYYTVRNLSPYTEYEFYIIAVNNLGRG 279 (904)
Q Consensus 253 ~~~~i~~L~p~~~Y~~~v~a~n~~g~s 279 (904)
..+.|..+...+.+.|+|.|.|..|..
T Consensus 40 ~~L~i~~~~~~D~G~Y~C~a~N~~G~~ 66 (74)
T cd05764 40 GTLDILITTVKDTGSFTCIASNAAGEA 66 (74)
T ss_pred CEEEEEECChhhCEEEEEEEECCCCeE
Confidence 468899999999999999999999864
No 288
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=87.84 E-value=3.4 Score=33.47 Aligned_cols=31 Identities=26% Similarity=0.248 Sum_probs=26.9
Q ss_pred ceEEEcCCCCCCeEEEEEEEEcCCCCCCCCC
Q psy8771 253 TYYTVRNLSPYTEYEFYIIAVNNLGRGPPSS 283 (904)
Q Consensus 253 ~~~~i~~L~p~~~Y~~~v~a~n~~g~s~~s~ 283 (904)
..+.|.++++.+++.|+|.|.|..|....+.
T Consensus 55 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~sa 85 (90)
T cd04974 55 EVLYLRNVSFDDAGEYTCLAGNSIGPSHHSA 85 (90)
T ss_pred ceEEEeccccccCcEEEEEeecccCcccCCE
Confidence 4689999999999999999999999865443
No 289
>PHA02633 hypothetical protein; Provisional
Probab=87.82 E-value=1.5 Score=31.68 Aligned_cols=36 Identities=14% Similarity=0.043 Sum_probs=28.4
Q ss_pred cceEEEEeee--cCCeEEEEEEEecCcceEEEEEEEEE
Q psy8771 156 GRNVLTLDRV--TESENYTCIAASVLGVIETSTIVKVQ 191 (904)
Q Consensus 156 ~~~~l~i~~l--~d~g~Y~c~a~n~~g~~~~~~~l~v~ 191 (904)
....|.|-+. +|+|.|.|+.+|..=..+.+..|.|.
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~ 53 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCIC 53 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEe
Confidence 4456777776 79999999999877667777777776
No 290
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=87.80 E-value=2.4 Score=33.99 Aligned_cols=31 Identities=13% Similarity=0.019 Sum_probs=26.3
Q ss_pred eceEEEcCCCCCCeEEEEEEEEcCCCCCCCC
Q psy8771 252 TTYYTVRNLSPYTEYEFYIIAVNNLGRGPPS 282 (904)
Q Consensus 252 ~~~~~i~~L~p~~~Y~~~v~a~n~~g~s~~s 282 (904)
...+.|.+++..+.+.|+|.|.|..|....+
T Consensus 49 ~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~ 79 (86)
T cd05862 49 SSTLTIENVTLSDLGRYTCTASSGQMIAKNS 79 (86)
T ss_pred eeEEEEecCCcccCEEEEEEEeecceEeccc
Confidence 4689999999999999999999987765433
No 291
>KOG4597|consensus
Probab=87.77 E-value=0.87 Score=47.45 Aligned_cols=85 Identities=13% Similarity=0.093 Sum_probs=61.7
Q ss_pred eEEcCCCCceEEecCCCeEEEEEEccCCCCeEEEee---CCccccCCCCcee-----ecceEEEEeee--cCCeEEEEEE
Q psy8771 106 QFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRK---GQNIELTPDDKLP-----VGRNVLTLDRV--TESENYTCIA 175 (904)
Q Consensus 106 ~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~k---~~~~~~~~~~~~~-----~~~~~l~i~~l--~d~g~Y~c~a 175 (904)
.+..-|.. ..+..++...+.|-+.|.|.+.|+|.+ ++...+.....+. .....|.|-+- .|+|.|+|.+
T Consensus 198 ~l~~cpa~-w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~ 276 (560)
T KOG4597|consen 198 ALVDCPAE-WFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSA 276 (560)
T ss_pred ccccCcch-hhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeecc
Confidence 44444555 788899999999999999999999998 3122221111111 13457888776 6999999999
Q ss_pred EecCcceEEEEEEEEE
Q psy8771 176 ASVLGVIETSTIVKVQ 191 (904)
Q Consensus 176 ~n~~g~~~~~~~l~v~ 191 (904)
.+..|.......+.+.
T Consensus 277 rcg~g~~~rdv~c~s~ 292 (560)
T KOG4597|consen 277 RCGAGFLRRDVPCSSV 292 (560)
T ss_pred ccccceeeccceeeee
Confidence 9999998887777665
No 292
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=87.71 E-value=1.4 Score=33.57 Aligned_cols=28 Identities=7% Similarity=0.172 Sum_probs=25.3
Q ss_pred ceEEEcCCCCCCeEEEEEEEEcCCCCCC
Q psy8771 253 TYYTVRNLSPYTEYEFYIIAVNNLGRGP 280 (904)
Q Consensus 253 ~~~~i~~L~p~~~Y~~~v~a~n~~g~s~ 280 (904)
..+.|.++.+.+.+.|+|.|.|..|...
T Consensus 34 ~~L~I~~v~~~D~G~YtC~a~N~~G~~~ 61 (70)
T cd05864 34 VHLTIYEVTEKDAGNYTVVLTNPITKEE 61 (70)
T ss_pred CEEEECcCCHHHCEEEEEEEEECCCcee
Confidence 4699999999999999999999998654
No 293
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=87.61 E-value=2.7 Score=34.47 Aligned_cols=27 Identities=19% Similarity=0.164 Sum_probs=23.0
Q ss_pred ceEEEcCCC-CCCeEEEEEEEEcCCCCC
Q psy8771 253 TYYTVRNLS-PYTEYEFYIIAVNNLGRG 279 (904)
Q Consensus 253 ~~~~i~~L~-p~~~Y~~~v~a~n~~g~s 279 (904)
..+.|.++. +.+.+.|+|.|.|..|..
T Consensus 58 g~L~i~~~~~~~D~G~Y~C~A~N~~G~~ 85 (94)
T cd05848 58 GNLIISNPSEVKDSGRYQCLATNSIGSI 85 (94)
T ss_pred CeEEEccCCccCcCEEEEEEEEcCCCeE
Confidence 467888874 689999999999999964
No 294
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=87.58 E-value=1.4 Score=34.86 Aligned_cols=28 Identities=18% Similarity=0.184 Sum_probs=24.9
Q ss_pred eceEEEcCCCCCCeEEEEEEEEcCCCCC
Q psy8771 252 TTYYTVRNLSPYTEYEFYIIAVNNLGRG 279 (904)
Q Consensus 252 ~~~~~i~~L~p~~~Y~~~v~a~n~~g~s 279 (904)
...+.|.++++.+.+.|.|.|.|..|..
T Consensus 47 ~~~L~i~~v~~~D~G~Y~C~a~N~~G~~ 74 (82)
T cd05856 47 KWTLSLKNLKPEDSGKYTCHVSNRAGEI 74 (82)
T ss_pred eEEEEEccCChhhCEEEEEEEEcCCccE
Confidence 3579999999999999999999998853
No 295
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=87.26 E-value=2.1 Score=33.43 Aligned_cols=28 Identities=25% Similarity=0.291 Sum_probs=22.5
Q ss_pred eceEEEcCCCC----CCeEEEEEEEEcCCCCC
Q psy8771 252 TTYYTVRNLSP----YTEYEFYIIAVNNLGRG 279 (904)
Q Consensus 252 ~~~~~i~~L~p----~~~Y~~~v~a~n~~g~s 279 (904)
...+.|..+.+ .+.+.|+|.|.|..|..
T Consensus 38 ~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~ 69 (77)
T cd05733 38 SGTLVIDNMNGGRAEDYEGEYQCYASNELGTA 69 (77)
T ss_pred CCEEEEeccCCCCCcCCCEEEEEEEEcCCCcE
Confidence 35678888754 57899999999999964
No 296
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=87.13 E-value=0.71 Score=39.73 Aligned_cols=73 Identities=21% Similarity=0.308 Sum_probs=43.7
Q ss_pred cCCCeEEEEEEcc-----CCCCeEEEeeCCccccCC-C--Cce-------------eecceEEEEeee-cCCeEEEEEEE
Q psy8771 119 LDSPLNLSCVAVG-----SPMPFVKWRKGQNIELTP-D--DKL-------------PVGRNVLTLDRV-TESENYTCIAA 176 (904)
Q Consensus 119 ~g~~~~l~C~~~g-----~p~p~i~W~k~~~~~~~~-~--~~~-------------~~~~~~l~i~~l-~d~g~Y~c~a~ 176 (904)
=.+++.|.|.+.. .+...|.|..++...+.. + .+. .-++.+|.+... .-.|.|+|.+.
T Consensus 26 CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~~GnYTCeVt 105 (130)
T PF08204_consen 26 CNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAVEGNYTCEVT 105 (130)
T ss_dssp T-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH-EEEEEEEE
T ss_pred cCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhccccceEEEEE
Confidence 3478899999975 233468999973322211 1 111 113446888776 24799999999
Q ss_pred ecCcceEEEEEEEEE
Q psy8771 177 SVLGVIETSTIVKVQ 191 (904)
Q Consensus 177 n~~g~~~~~~~l~v~ 191 (904)
....+.+....|...
T Consensus 106 ~~~~ege~~i~Lk~~ 120 (130)
T PF08204_consen 106 ELSREGETTIELKYR 120 (130)
T ss_dssp ETTEEEEEEEEEEE-
T ss_pred ecCCCceEEEEEEEE
Confidence 988888888888764
No 297
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=86.93 E-value=4.9 Score=32.02 Aligned_cols=26 Identities=8% Similarity=-0.066 Sum_probs=23.5
Q ss_pred eceEEEcCCCCCCeEEEEEEEEcCCC
Q psy8771 252 TTYYTVRNLSPYTEYEFYIIAVNNLG 277 (904)
Q Consensus 252 ~~~~~i~~L~p~~~Y~~~v~a~n~~g 277 (904)
...|.|.++++.+.+.|.|.|.|..+
T Consensus 45 ~s~L~I~~~~~~DsG~Y~C~a~n~~~ 70 (84)
T cd05861 45 RSTLTFPHATVEDSGTYECAAHESTQ 70 (84)
T ss_pred EEEEEECCCCcCCCEEEEEEEEECcc
Confidence 46799999999999999999998765
No 298
>KOG1948|consensus
Probab=86.82 E-value=43 Score=38.61 Aligned_cols=49 Identities=14% Similarity=0.226 Sum_probs=31.4
Q ss_pred CCceeeEEEEEEeCCccccc-eEEecccceEEEeCCCCCcEEEEEEEEEc
Q psy8771 648 GENIISYELYWNDTYAKAKH-HRRIGLVETYSLTGLYPNTLYYIWLAAQS 696 (904)
Q Consensus 648 ~~~~~~y~v~~~~~~~~~~~-~~~~~~~~~~~l~~L~p~t~Y~v~V~a~~ 696 (904)
+.+..+-.|+-...+..... .......-.|+|.||.|++.|.|+|.+.-
T Consensus 918 Gdp~~gVaieA~sdn~~~y~eeattdenG~yRiRGL~Pdc~Y~V~vk~~~ 967 (1165)
T KOG1948|consen 918 GDPMKGVAIEALSDNCDLYQEEATTDENGTYRIRGLLPDCEYQVHVKSYA 967 (1165)
T ss_pred CCcccCeEEEEecCCCCccccccccccCCcEEEeccCCCceEEEEEeecc
Confidence 34445555554444432222 22233345899999999999999999984
No 299
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=86.78 E-value=1.1 Score=37.23 Aligned_cols=28 Identities=7% Similarity=-0.082 Sum_probs=25.3
Q ss_pred ceEEEcCCCCCCeEEEEEEEEcCCCCCC
Q psy8771 253 TYYTVRNLSPYTEYEFYIIAVNNLGRGP 280 (904)
Q Consensus 253 ~~~~i~~L~p~~~Y~~~v~a~n~~g~s~ 280 (904)
..|.|.++++.+.+.|+|.|.|..|...
T Consensus 65 s~L~I~~v~~~D~G~Ytc~A~N~~g~~~ 92 (101)
T cd05859 65 SKLKLIRAKEEDSGLYTALAQNEDAVKS 92 (101)
T ss_pred cEEEEeeCCHHHCEEEEEEEEcCCceEE
Confidence 6799999999999999999999988643
No 300
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=86.64 E-value=4.8 Score=32.68 Aligned_cols=72 Identities=10% Similarity=0.050 Sum_probs=44.5
Q ss_pred cCCeEEEEEeCCCccceEEEEEEEeCCCCCCeEE-eecceeceEEEcCCCCCCeEEEEEEEEcC-CCCCCCCCCeEE
Q psy8771 213 TATSVRLDWTYPSETLLYYVIQYKPKAANTPYSE-ISGIITTYYTVRNLSPYTEYEFYIIAVNN-LGRGPPSSPAVI 287 (904)
Q Consensus 213 ~~~sv~l~W~~~~~~~~~y~v~~~~~~~~~~~~~-~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~-~g~s~~s~~~~~ 287 (904)
....++|.+..+ .+...|.+... +....... ........+.|..+.+.+.+.|+|++.+. .+.+..|.++.+
T Consensus 15 ~G~~VtL~C~~~-~~~~~f~l~k~--g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~~~~~S~~Sd~lel 88 (91)
T cd05751 15 LGKPVTLRCQGP-YGAVEYRLYRE--GSTFAVKKPPEPQNKAKFFIPSMKREHAGRYRCYYRSGVALWSEPSDPLEL 88 (91)
T ss_pred CCCcEEEEEecC-CCCCEEEEEEC--CCCccccccCCCceeEEEEccCCChhHCEEEEEEEECCCCccCCCCCcEEE
Confidence 346778888765 23444544322 11111111 12344567999999999999999999987 445556665554
No 301
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=86.53 E-value=2.6 Score=34.38 Aligned_cols=28 Identities=14% Similarity=0.138 Sum_probs=24.8
Q ss_pred eeceEEEcCCCCCCeEEEEEEEEcCCCC
Q psy8771 251 ITTYYTVRNLSPYTEYEFYIIAVNNLGR 278 (904)
Q Consensus 251 ~~~~~~i~~L~p~~~Y~~~v~a~n~~g~ 278 (904)
....++|.++++.+.+.|+|.|.|..|.
T Consensus 55 ~~~~L~I~~v~~~D~G~Y~C~A~N~~g~ 82 (92)
T cd04977 55 VRSTLTIYNANIEDAGIYKCVATDAKGT 82 (92)
T ss_pred CEEEEEEecCCcccCEEEEEEEEcCCCC
Confidence 3468999999999999999999998764
No 302
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=86.44 E-value=2.1 Score=33.73 Aligned_cols=29 Identities=17% Similarity=0.015 Sum_probs=25.8
Q ss_pred eceEEEcCCCCCCeEEEEEEEEcCCCCCC
Q psy8771 252 TTYYTVRNLSPYTEYEFYIIAVNNLGRGP 280 (904)
Q Consensus 252 ~~~~~i~~L~p~~~Y~~~v~a~n~~g~s~ 280 (904)
...+.|.++++.+.+.|.|.|.|..|...
T Consensus 46 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 74 (81)
T cd05765 46 IGQLVIYNAQPQDAGLYTCTARNSGGLLR 74 (81)
T ss_pred ccEEEEccCCcccCEEEEEEEecCCceEE
Confidence 36799999999999999999999998643
No 303
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=86.23 E-value=0.77 Score=35.25 Aligned_cols=27 Identities=7% Similarity=0.191 Sum_probs=24.6
Q ss_pred ceEEEcCCCCCCeEEEEEEEEcCCCCC
Q psy8771 253 TYYTVRNLSPYTEYEFYIIAVNNLGRG 279 (904)
Q Consensus 253 ~~~~i~~L~p~~~Y~~~v~a~n~~g~s 279 (904)
..+.|.++++.+.+.|+|.|.|..|..
T Consensus 35 ~~L~I~~v~~~D~G~YtC~a~N~~g~~ 61 (71)
T cd04976 35 HSLTIKDVTEEDAGNYTVVLTNKQAKL 61 (71)
T ss_pred CEEEECcCCHHHCEEEEEEEEcCCccE
Confidence 679999999999999999999998853
No 304
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=86.17 E-value=4.6 Score=32.20 Aligned_cols=29 Identities=14% Similarity=0.134 Sum_probs=25.5
Q ss_pred eceEEEcCCCCCCeEEEEEEEEcCCCCCC
Q psy8771 252 TTYYTVRNLSPYTEYEFYIIAVNNLGRGP 280 (904)
Q Consensus 252 ~~~~~i~~L~p~~~Y~~~v~a~n~~g~s~ 280 (904)
...+.|.++++.+.+.|+|.|.|..|...
T Consensus 50 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 78 (86)
T cd05724 50 DGNLLIAEARKSDEGTYKCVATNMVGERE 78 (86)
T ss_pred CCEEEEeECCcccCEEEEEEEEeccCcee
Confidence 35799999999999999999999988643
No 305
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=86.11 E-value=2.2 Score=34.11 Aligned_cols=64 Identities=14% Similarity=0.117 Sum_probs=38.5
Q ss_pred CCeEEEEEeCCCccceEEEEEEEeCCCCCCeEEeecceeceEEEcCCCCCCeEEEEEEEEcCCCCCC
Q psy8771 214 ATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEISGIITTYYTVRNLSPYTEYEFYIIAVNNLGRGP 280 (904)
Q Consensus 214 ~~sv~l~W~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~s~ 280 (904)
...++|.+...... ....+.|...+...... . ......+.|.++++.+.+.|.|.|.|..|...
T Consensus 16 G~~v~L~C~~~~~~-~~~~i~W~~~~~~~~~~-~-~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~ 79 (85)
T cd05754 16 GADVSFICRAKSKS-PAYTLVWTRVGGGLPSR-A-MDFNGILTIRNVQLSDAGTYVCTGSNMLDTDE 79 (85)
T ss_pred CCCEEEEEEcCCCC-CCcEEEEEECCCcCCCc-c-cccCCEEEECCCCHHHCEEEEEEEeccCCeEe
Confidence 34466666543211 12345555443221111 1 11236799999999999999999999988643
No 306
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=85.25 E-value=4.1 Score=33.24 Aligned_cols=27 Identities=15% Similarity=0.090 Sum_probs=23.3
Q ss_pred ceEEEcCCC-CCCeEEEEEEEEcCCCCC
Q psy8771 253 TYYTVRNLS-PYTEYEFYIIAVNNLGRG 279 (904)
Q Consensus 253 ~~~~i~~L~-p~~~Y~~~v~a~n~~g~s 279 (904)
..|.|.++. ..+.+.|+|.|.|..|..
T Consensus 57 g~L~I~~~~~~~D~G~Y~C~A~N~~G~~ 84 (93)
T cd05849 57 GNLVINNPDKYKDAGRYVCIVSNIYGKV 84 (93)
T ss_pred CEEEECcCCcCCCCEEEEEEEEeCcceE
Confidence 568898885 689999999999999864
No 307
>PLN02533 probable purple acid phosphatase
Probab=84.97 E-value=6.3 Score=42.98 Aligned_cols=81 Identities=16% Similarity=0.263 Sum_probs=48.5
Q ss_pred CCCcceEEEeeccceEEEeccCCCCCCCceeeEEEEEEeCCccccceE------E-------ecccceEEEeCCCCCcEE
Q psy8771 622 AKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHR------R-------IGLVETYSLTGLYPNTLY 688 (904)
Q Consensus 622 ~~p~~l~~~~~~~~~~~l~w~~~~~~~~~~~~y~v~~~~~~~~~~~~~------~-------~~~~~~~~l~~L~p~t~Y 688 (904)
..|..++++-.+.+.+.|+|....... -.|+|....+...... . .+....+.|.+|+|+|.|
T Consensus 42 ~~P~qvhls~~~~~~m~V~W~T~~~~~-----~~V~yG~~~~~l~~~a~g~~~~~~~~~~~~~g~iH~v~l~~L~p~T~Y 116 (427)
T PLN02533 42 THPDQVHISLVGPDKMRISWITQDSIP-----PSVVYGTVSGKYEGSANGTSSSYHYLLIYRSGQINDVVIGPLKPNTVY 116 (427)
T ss_pred CCCceEEEEEcCCCeEEEEEECCCCCC-----CEEEEecCCCCCcceEEEEEEEEeccccccCCeEEEEEeCCCCCCCEE
Confidence 356666666666778999997754321 2355655432211100 0 011245789999999999
Q ss_pred EEEEEEEcCCCCCCCCCCeeEEecC
Q psy8771 689 YIWLAAQSPRGEGATTPPIPVRTKQ 713 (904)
Q Consensus 689 ~v~V~a~~~~G~~~~s~~~~~~t~~ 713 (904)
.++|- ....+....|+|.+
T Consensus 117 ~Yrvg------~~~~s~~~~F~T~p 135 (427)
T PLN02533 117 YYKCG------GPSSTQEFSFRTPP 135 (427)
T ss_pred EEEEC------CCCCccceEEECCC
Confidence 99983 11235567788864
No 308
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=84.58 E-value=96 Score=36.97 Aligned_cols=84 Identities=13% Similarity=0.228 Sum_probs=52.8
Q ss_pred CCCCCCCCeEEEecCCceEEEEecCCCC--CCCceeeEEEEEEeCCCCCCcceEE--------Eee---cCceEEEE--c
Q psy8771 480 EPGTAPRDVQVRPLSSSTMVIQWDEPET--PNGQITGYKVYYTQDQSLPMSAWET--------QVV---DNNQLTTI--S 544 (904)
Q Consensus 480 ~p~~~p~~l~v~~~~~~~~~l~W~~p~~--~~~~i~~Y~v~~~~~~~~~~~~~~~--------~~~---~~~~~~~~--~ 544 (904)
.||....+|++.. ....|.|+|+.|-+ ..|....|.|++...-......+.. ..+ +....+.+ .
T Consensus 754 ~PP~rItDL~~~~-~~~~v~LsWTAPG~d~D~G~a~~y~ir~s~~~~~l~~~f~~a~~vn~~~~~P~~ags~e~~~f~~~ 832 (863)
T TIGR00868 754 FPPSKITDLEAGF-QGDNIILTWTAPGDVLDHGRADRYIIRISTSILDLRDDFNDATQVNTTDLIPKEANSKEVFVFKPE 832 (863)
T ss_pred CCCccceeeEEee-cCCEEEEEeeCCCccCCCCccceEEEEecCCHHHHHhhhccccccccCCcCCCCCCceeEEEEeCC
Confidence 4678888998854 44569999999865 5678899999998643111001100 001 22233333 3
Q ss_pred C--CCCCCeEEEEEEEEeCCCC
Q psy8771 545 D--LTPHTIYTIRVQAFTSVGP 564 (904)
Q Consensus 545 ~--L~p~t~Y~~~V~a~~~~g~ 564 (904)
. .+.++.|.|-|+|++..|.
T Consensus 833 ~~~~~~~~~~~~ai~a~d~~~~ 854 (863)
T TIGR00868 833 GIPIENGTDLFIAVQAIDKANL 854 (863)
T ss_pred cccccCCeEEEEEEEEEccccc
Confidence 3 2257789999999998764
No 309
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=84.47 E-value=5 Score=30.09 Aligned_cols=35 Identities=26% Similarity=0.220 Sum_probs=24.4
Q ss_pred EEEecCcc-eEEecCCCCCceEEEEEEEeeCCCCCCC
Q psy8771 768 IVTLKNQT-SFVLDELKKWTEYRIWVLAGTSIGDGPS 803 (904)
Q Consensus 768 ~~~~~~~~-~~~i~~L~p~t~Y~~~V~a~~~~g~g~~ 803 (904)
+....... .+.+.+|.|| .|.|.|+|.+..|....
T Consensus 21 W~~~~~~~~~~~~~~L~~G-~Y~l~V~a~~~~~~~~~ 56 (66)
T PF07495_consen 21 WITLGSYSNSISYTNLPPG-KYTLEVRAKDNNGKWSS 56 (66)
T ss_dssp EEEESSTS-EEEEES--SE-EEEEEEEEEETTS-B-S
T ss_pred EEECCCCcEEEEEEeCCCE-EEEEEEEEECCCCCcCc
Confidence 45555444 9999999997 99999999998876443
No 310
>PF09240 IL6Ra-bind: Interleukin-6 receptor alpha chain, binding; InterPro: IPR015321 Members of this entry adopt a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, in a Greek-key topology. They are required for binding to the cytokine Interleukin-6 []. ; PDB: 1N26_A 1P9M_C 3LB6_C 1PVH_A 3L5H_A 1BQU_A 1I1R_A 3QT2_B 3BPN_C 3BPO_C ....
Probab=84.21 E-value=7.5 Score=32.16 Aligned_cols=76 Identities=9% Similarity=0.026 Sum_probs=51.5
Q ss_pred CCcceEEEeecCCeEEEEEeCC--CccceEEEEEEEeCCCCCCeEE-----eecceeceEEEcCCCCC----CeEEEEEE
Q psy8771 203 APLDVKISEVTATSVRLDWTYP--SETLLYYVIQYKPKAANTPYSE-----ISGIITTYYTVRNLSPY----TEYEFYII 271 (904)
Q Consensus 203 ~p~~l~~~~~~~~sv~l~W~~~--~~~~~~y~v~~~~~~~~~~~~~-----~~~~~~~~~~i~~L~p~----~~Y~~~v~ 271 (904)
+|.||++.-.+...+.|+|.+. ..+-..|.+.++..... .... ...+....+.+...... ..|.+.|.
T Consensus 1 ~~~nlsC~~~~~~~m~CtW~~g~~~~~~t~y~L~~~~~~~~-~~~eC~~y~~~~~~~~gC~~~~~~~~~~~~~~~~v~V~ 79 (99)
T PF09240_consen 1 KPQNLSCFIYNLEYMNCTWEPGKEAPPDTQYTLYYWYSPLE-EEKECPHYSKDSGTRIGCQFPVSEIDSSEFSQYNVCVN 79 (99)
T ss_dssp S-EEEEEEEETTTEEEEEEECCTTCSTTEEEEEEEEETTSS-SEEEESEEEESTSSEEEEEEESCTT-TTTTSEEEEEEE
T ss_pred CCeeCEEEEECCEEEEEEECCCCCCCCcccEEEEEEcCCCC-ccccCCCccccCCceeEEEecCCCccccccceEEEEEE
Confidence 4678999888899999999986 44557899999876422 2221 11123456777776663 37899999
Q ss_pred EEcCCCCC
Q psy8771 272 AVNNLGRG 279 (904)
Q Consensus 272 a~n~~g~s 279 (904)
+.+..|..
T Consensus 80 ~ss~~~~i 87 (99)
T PF09240_consen 80 GSSSAGSI 87 (99)
T ss_dssp EEETTEEE
T ss_pred eccCCCcc
Confidence 88887653
No 311
>PF09240 IL6Ra-bind: Interleukin-6 receptor alpha chain, binding; InterPro: IPR015321 Members of this entry adopt a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, in a Greek-key topology. They are required for binding to the cytokine Interleukin-6 []. ; PDB: 1N26_A 1P9M_C 3LB6_C 1PVH_A 3L5H_A 1BQU_A 1I1R_A 3QT2_B 3BPN_C 3BPO_C ....
Probab=83.97 E-value=12 Score=31.05 Aligned_cols=79 Identities=15% Similarity=0.167 Sum_probs=53.6
Q ss_pred CCCeEEEecCCceEEEEecCCCCCCCceeeEEEEEEeCCCCCCcceEEEeecC--ceEEEEcCCCCC----CeEEEEEEE
Q psy8771 485 PRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDN--NQLTTISDLTPH----TIYTIRVQA 558 (904)
Q Consensus 485 p~~l~v~~~~~~~~~l~W~~p~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~L~p~----t~Y~~~V~a 558 (904)
|.+|...-.+...|..+|.+.... .....|.++|+.........+....... ...+.+...... ..|.|.|.+
T Consensus 2 ~~nlsC~~~~~~~m~CtW~~g~~~-~~~t~y~L~~~~~~~~~~~eC~~y~~~~~~~~gC~~~~~~~~~~~~~~~~v~V~~ 80 (99)
T PF09240_consen 2 PQNLSCFIYNLEYMNCTWEPGKEA-PPDTQYTLYYWYSPLEEEKECPHYSKDSGTRIGCQFPVSEIDSSEFSQYNVCVNG 80 (99)
T ss_dssp -EEEEEEEETTTEEEEEEECCTTC-STTEEEEEEEEETTSSSEEEESEEEESTSSEEEEEEESCTT-TTTTSEEEEEEEE
T ss_pred CeeCEEEEECCEEEEEEECCCCCC-CCcccEEEEEEcCCCCccccCCCccccCCceeEEEecCCCccccccceEEEEEEe
Confidence 568888888889999999984432 2347899999987644333333333333 456777776662 479999999
Q ss_pred EeCCCC
Q psy8771 559 FTSVGP 564 (904)
Q Consensus 559 ~~~~g~ 564 (904)
.+..|.
T Consensus 81 ss~~~~ 86 (99)
T PF09240_consen 81 SSSAGS 86 (99)
T ss_dssp EETTEE
T ss_pred ccCCCc
Confidence 887764
No 312
>KOG1225|consensus
Probab=83.60 E-value=3 Score=45.64 Aligned_cols=154 Identities=14% Similarity=0.105 Sum_probs=98.2
Q ss_pred CCCcceEEEeeccceEEEeccCCCCCCCceeeEEEEEEeCCcc--ccceEEecccceEEEeCCCCCcEEEEEEEEEcCC-
Q psy8771 622 AKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAK--AKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPR- 698 (904)
Q Consensus 622 ~~p~~l~~~~~~~~~~~l~w~~~~~~~~~~~~y~v~~~~~~~~--~~~~~~~~~~~~~~l~~L~p~t~Y~v~V~a~~~~- 698 (904)
.+|..+....-+...+.+.|.. ......|...|...... ............+.+..|+|+..|.++++++-..
T Consensus 367 ~~~~~~~~~~cs~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~ 442 (525)
T KOG1225|consen 367 ADPSLLLITECSPPSLCIAGVG----RRRVTHCAGTYCPLGESGGDLQGRVPGDANSVDIQGLEPGDEYNCSVNTVAANI 442 (525)
T ss_pred CCchhhcccccCCCceeecccc----ccccccccccccccccCCCccceeeccceeeeeeeeecCCcceeeehhhhhhhh
Confidence 3555666666777888888882 22344454444442211 1134455566789999999999999999998653
Q ss_pred CCCCCCCCeeEEecCCCCCCCCCCcEEEecCCCEEEEEecCCCCCCCCccEEEEEEEEEEccCCCCccEEEEec-CcceE
Q psy8771 699 GEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLK-NQTSF 777 (904)
Q Consensus 699 G~~~~s~~~~~~t~~~~p~~~P~~l~~~~~~~~~v~l~W~~~~~~~~~g~~~~Y~v~~~~~~~~~~~~~~~~~~-~~~~~ 777 (904)
|..... ....+... -+..+.+.....+++.+.|..|... ..++.+.+.....+.. ....+. ..+.+
T Consensus 443 ~~~~~~--~~~~~~~~----~~g~~~v~~~~~~s~e~~g~~~s~~-----~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 509 (525)
T KOG1225|consen 443 GSLPKD--KSETTVLC----WNGGLCVDGETESSLEVGGPCPSSG-----TCGWEVRCGPCGNDGG--VNAEPPPECTSY 509 (525)
T ss_pred ccCCcc--cccceEee----cCCceeeeeeeeccccccCCCCCcc-----ccceEEEeeecCcccc--cccCCCCCCCCC
Confidence 222222 22233322 2567889999999999999999632 5677887732221111 111122 77888
Q ss_pred EecCCCCCceEEEEE
Q psy8771 778 VLDELKKWTEYRIWV 792 (904)
Q Consensus 778 ~i~~L~p~t~Y~~~V 792 (904)
...+|.+++.|.+.+
T Consensus 510 ~~~~l~~c~~~~~~~ 524 (525)
T KOG1225|consen 510 DRTGLGPCTEYEVSV 524 (525)
T ss_pred CccCcccccceeccc
Confidence 899999999998865
No 313
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=83.55 E-value=4.1 Score=30.96 Aligned_cols=25 Identities=16% Similarity=0.286 Sum_probs=20.3
Q ss_pred ceEEEcCCCCCCeEEEEEEEEcCCCCC
Q psy8771 253 TYYTVRNLSPYTEYEFYIIAVNNLGRG 279 (904)
Q Consensus 253 ~~~~i~~L~p~~~Y~~~v~a~n~~g~s 279 (904)
..+.|.++. +.+.|+|.|.|..|..
T Consensus 38 ~~L~i~~~~--d~G~Y~C~A~N~~G~~ 62 (69)
T cd05739 38 NVLELTNIY--ESANYTCVAISSLGMI 62 (69)
T ss_pred cEEEEeccc--cCeeEEEEEEeCCCEE
Confidence 457888875 5789999999999863
No 314
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=83.47 E-value=3.8 Score=32.13 Aligned_cols=27 Identities=7% Similarity=0.096 Sum_probs=25.0
Q ss_pred ceEEEcCCCCCCeEEEEEEEEcCCCCC
Q psy8771 253 TYYTVRNLSPYTEYEFYIIAVNNLGRG 279 (904)
Q Consensus 253 ~~~~i~~L~p~~~Y~~~v~a~n~~g~s 279 (904)
.++.|.++++.+.+.|+|.|.|..|..
T Consensus 44 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 70 (79)
T cd05734 44 GSLLIKHVLEEDSGYYLCKVSNDVGAD 70 (79)
T ss_pred CeEEECcCCcccCEEEEEEEEeCCCCC
Confidence 679999999999999999999999865
No 315
>PLN02533 probable purple acid phosphatase
Probab=82.86 E-value=10 Score=41.41 Aligned_cols=84 Identities=17% Similarity=0.187 Sum_probs=51.7
Q ss_pred CCCCCcEEEecCCCEEEEEecCCCCCCCCccEEEEEEEEEEccCCCCccE---EEEe-------c-CcceEEecCCCCCc
Q psy8771 718 APPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEAS---IVTL-------K-NQTSFVLDELKKWT 786 (904)
Q Consensus 718 ~~P~~l~~~~~~~~~v~l~W~~~~~~~~~g~~~~Y~v~~~~~~~~~~~~~---~~~~-------~-~~~~~~i~~L~p~t 786 (904)
..|..+++.-.+.+++.|+|.... .. .+ .|+|....+...... .... + ....+.|.+|+|++
T Consensus 42 ~~P~qvhls~~~~~~m~V~W~T~~--~~-~~----~V~yG~~~~~l~~~a~g~~~~~~~~~~~~~g~iH~v~l~~L~p~T 114 (427)
T PLN02533 42 THPDQVHISLVGPDKMRISWITQD--SI-PP----SVVYGTVSGKYEGSANGTSSSYHYLLIYRSGQINDVVIGPLKPNT 114 (427)
T ss_pred CCCceEEEEEcCCCeEEEEEECCC--CC-CC----EEEEecCCCCCcceEEEEEEEEeccccccCCeEEEEEeCCCCCCC
Confidence 357888888778999999999873 21 22 244543322111000 0000 1 23567899999999
Q ss_pred eEEEEEEEeeCCCCCCCCCcEEeecCCC
Q psy8771 787 EYRIWVLAGTSIGDGPSSYPITIRTHED 814 (904)
Q Consensus 787 ~Y~~~V~a~~~~g~g~~s~~~~~~t~~~ 814 (904)
.|.++|- ....|....|+|.+.
T Consensus 115 ~Y~Yrvg------~~~~s~~~~F~T~p~ 136 (427)
T PLN02533 115 VYYYKCG------GPSSTQEFSFRTPPS 136 (427)
T ss_pred EEEEEEC------CCCCccceEEECCCC
Confidence 9999984 222366688998654
No 316
>KOG1480|consensus
Probab=82.71 E-value=0.74 Score=51.10 Aligned_cols=74 Identities=28% Similarity=0.554 Sum_probs=55.7
Q ss_pred EEcCCCCceEEecCCCeEEEEEE-ccCCCCeEEEeeCCccccCCCCcee-ecceEEEEeee--cCCeEEEEEEEecCcce
Q psy8771 107 FSIPPPALLEVMLDSPLNLSCVA-VGSPMPFVKWRKGQNIELTPDDKLP-VGRNVLTLDRV--TESENYTCIAASVLGVI 182 (904)
Q Consensus 107 ~~~~~~~~~~~~~g~~~~l~C~~-~g~p~p~i~W~k~~~~~~~~~~~~~-~~~~~l~i~~l--~d~g~Y~c~a~n~~g~~ 182 (904)
|...|.. ..|..+....+.|.. .|.|...++|+|+ +..+.....+. ..++.+.|... .|.|.|+|.|.|..+..
T Consensus 132 f~~~p~~-q~V~~~s~~~l~cr~pe~~paae~~w~k~-e~~~~pd~n~~~~~d~~li~~~arlsd~~nytc~a~ni~~~r 209 (909)
T KOG1480|consen 132 FEQSPVG-QEVQEETTLQLPCRPPEGDPKAEVEWLKN-EVVIDPDANVIRASDHNLIISQARLSDSGNYTCEATNIVAKR 209 (909)
T ss_pred hccChhh-heecccccccccccCcccchhhhhhcccc-CCCCCccccchhhhcCCccccchhhhhcccceeeeehhhccc
Confidence 5556666 777788888888865 5899999999999 66555533332 35677888766 79999999999988763
No 317
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=81.45 E-value=6.8 Score=40.08 Aligned_cols=38 Identities=21% Similarity=0.357 Sum_probs=24.6
Q ss_pred CCCCCCeEEcCCCCceEEecCCCeEEEEEEccC-CC-CeEEEeeC
Q psy8771 100 VRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGS-PM-PFVKWRKG 142 (904)
Q Consensus 100 ~~~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~-p~-p~i~W~k~ 142 (904)
....||+....-.. ..+ .++|.|.|.|. |. ..|.|.|+
T Consensus 199 ~R~vpP~V~Vt~k~----~~~-~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 199 PKPVTPTVKVTGEE----LGD-NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CCCCCCceEEeccc----CCC-CceEEEEEEeEeCCccEEEEEec
Confidence 35667765432211 112 57999999994 55 57899999
No 318
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=81.42 E-value=9.7 Score=29.67 Aligned_cols=27 Identities=15% Similarity=0.050 Sum_probs=21.2
Q ss_pred ceEEEcCCCCC----CeEEEEEEEEcCCCCC
Q psy8771 253 TYYTVRNLSPY----TEYEFYIIAVNNLGRG 279 (904)
Q Consensus 253 ~~~~i~~L~p~----~~Y~~~v~a~n~~g~s 279 (904)
..+.|..+.+. +++.|+|.|.|..|..
T Consensus 39 g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~ 69 (77)
T cd05874 39 GTLVINIMNGEKAEAYEGVYQCTARNERGAA 69 (77)
T ss_pred ceEEEeccccCCCCCCCEEEEEEEEcCCCeE
Confidence 55777777653 5799999999999864
No 319
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=81.37 E-value=12 Score=30.82 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=24.2
Q ss_pred ceEEEcCCCCCC-eEEEEEEEEcCCCCCC
Q psy8771 253 TYYTVRNLSPYT-EYEFYIIAVNNLGRGP 280 (904)
Q Consensus 253 ~~~~i~~L~p~~-~Y~~~v~a~n~~g~s~ 280 (904)
..+.|.+++..+ .+.|.|.|.|..|...
T Consensus 64 s~L~I~~v~~~d~~G~Y~C~A~N~~G~~~ 92 (98)
T cd05758 64 STLTISNTQESDFQTSYNCTAWNSFGSGT 92 (98)
T ss_pred EEEEECCccccccceeEEEEEEcCCCccc
Confidence 579999999954 8999999999999753
No 320
>PHA02982 hypothetical protein; Provisional
Probab=81.29 E-value=4.5 Score=37.39 Aligned_cols=68 Identities=16% Similarity=0.333 Sum_probs=46.1
Q ss_pred eEEecCCCeEEEEEEccC-CCCeEEEeeCCccccCCC----------------Cc--ee----ecceEEEEeee--cCCe
Q psy8771 115 LEVMLDSPLNLSCVAVGS-PMPFVKWRKGQNIELTPD----------------DK--LP----VGRNVLTLDRV--TESE 169 (904)
Q Consensus 115 ~~~~~g~~~~l~C~~~g~-p~p~i~W~k~~~~~~~~~----------------~~--~~----~~~~~l~i~~l--~d~g 169 (904)
+....|+++.|+|..... -.-...|.++.+..+... .+ +. ....+|+|+++ +..|
T Consensus 34 v~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~G 113 (251)
T PHA02982 34 VNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNLG 113 (251)
T ss_pred hhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccCC
Confidence 777889999999995533 334578999755433210 01 11 24568999988 6789
Q ss_pred EEEEEEEecCcce
Q psy8771 170 NYTCIAASVLGVI 182 (904)
Q Consensus 170 ~Y~c~a~n~~g~~ 182 (904)
-|+|.|....+..
T Consensus 114 CYtc~~ks~~~k~ 126 (251)
T PHA02982 114 CFTCEAKDAEGKE 126 (251)
T ss_pred ceEEEEecCCCch
Confidence 9999998766543
No 321
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=80.94 E-value=7.9 Score=30.56 Aligned_cols=25 Identities=24% Similarity=0.194 Sum_probs=20.1
Q ss_pred ceEEEcCCCCCCeEEEEEEEEcCCCCC
Q psy8771 253 TYYTVRNLSPYTEYEFYIIAVNNLGRG 279 (904)
Q Consensus 253 ~~~~i~~L~p~~~Y~~~v~a~n~~g~s 279 (904)
..+.|.++. +.+.|.|.|.|..|..
T Consensus 49 s~L~i~~~~--d~g~Y~C~A~N~~G~~ 73 (81)
T cd05749 49 SVLNVPGLN--ETSKFSCEAHNAKGVT 73 (81)
T ss_pred CEEEEcccc--CCeEEEEEEEeccCcE
Confidence 568888875 4579999999999964
No 322
>PHA03042 CD47-like protein; Provisional
Probab=80.84 E-value=6.3 Score=38.39 Aligned_cols=69 Identities=14% Similarity=0.281 Sum_probs=45.4
Q ss_pred CCCeEEEEEEccC-----CCCeEEEeeCCccccCCCCceeecceEEEEeee-cCCeEEEEEEEecCcceEEEEEEEEE
Q psy8771 120 DSPLNLSCVAVGS-----PMPFVKWRKGQNIELTPDDKLPVGRNVLTLDRV-TESENYTCIAASVLGVIETSTIVKVQ 191 (904)
Q Consensus 120 g~~~~l~C~~~g~-----p~p~i~W~k~~~~~~~~~~~~~~~~~~l~i~~l-~d~g~Y~c~a~n~~g~~~~~~~l~v~ 191 (904)
.+.+.+.|.+..- ....|.|..++...+..+.. +..+|++..- .-.|.|+|.|.+...+.+....|.-.
T Consensus 31 N~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t---n~aSL~~~f~~~l~GNYTCEv~~l~n~gk~~IeLk~~ 105 (286)
T PHA03042 31 NKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT---NTSSLKFNFSKNLSGNYTCEAINKFNKIKNTIELQYV 105 (286)
T ss_pred CceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC---cceEEEEeccccCCCceeEEEeecccCccEEEEEEEE
Confidence 4778899988742 45579999983333322221 3356777666 46899999998877666666655544
No 323
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=80.15 E-value=6.7 Score=31.78 Aligned_cols=27 Identities=19% Similarity=0.139 Sum_probs=22.4
Q ss_pred ceEEEcCCC-CCCeEEEEEEEEcCCCCC
Q psy8771 253 TYYTVRNLS-PYTEYEFYIIAVNNLGRG 279 (904)
Q Consensus 253 ~~~~i~~L~-p~~~Y~~~v~a~n~~g~s 279 (904)
..+.|.++. ..+.+.|+|.|.|..|..
T Consensus 58 ~~L~i~~~~~~~d~G~Y~C~a~N~~G~~ 85 (91)
T cd04967 58 GNLVISNPSKAKDAGRYQCLASNIVGTV 85 (91)
T ss_pred CEEEEecCCccCCCEEEEEEEEcCCCEE
Confidence 467888876 588999999999999853
No 324
>PHA03052 Hypothetical protein; Provisional
Probab=79.94 E-value=9.2 Score=28.24 Aligned_cols=33 Identities=21% Similarity=0.311 Sum_probs=26.2
Q ss_pred ceEEecCCCeEEEEEEc-cCC--CCeEEEeeCCcccc
Q psy8771 114 LLEVMLDSPLNLSCVAV-GSP--MPFVKWRKGQNIEL 147 (904)
Q Consensus 114 ~~~~~~g~~~~l~C~~~-g~p--~p~i~W~k~~~~~~ 147 (904)
.+.+..|+.++|.|++. |.| .+.|.|.-| +..+
T Consensus 6 ~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N-~~~~ 41 (69)
T PHA03052 6 GIVTSLGSNLTITCKVSLRPPTTDADVFWISN-GMYY 41 (69)
T ss_pred cEEEEccCCceEeEEEEecCCCcceEEEEEeC-CcEE
Confidence 38999999999999998 333 456889998 6555
No 325
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=78.29 E-value=12 Score=30.15 Aligned_cols=60 Identities=17% Similarity=0.271 Sum_probs=38.9
Q ss_pred eEEecCCCeEEEEEEcc-----CCCCeEEEeeCCccccCCCCceeecce--EEEEeeecCC--eEEEEEE
Q psy8771 115 LEVMLDSPLNLSCVAVG-----SPMPFVKWRKGQNIELTPDDKLPVGRN--VLTLDRVTES--ENYTCIA 175 (904)
Q Consensus 115 ~~~~~g~~~~l~C~~~g-----~p~p~i~W~k~~~~~~~~~~~~~~~~~--~l~i~~l~d~--g~Y~c~a 175 (904)
..+..|++++..|...- .....|.|+.+ +..++...+..++++ +++|.++... ..|-|..
T Consensus 13 pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln-~~~iP~~qy~~in~~~SsVT~~~~~~~~~~L~cC~l 81 (89)
T PF06328_consen 13 PVVSLGSNVTASCVLKQNCSHSVNASQIVWKLN-GEKIPGSQYRVINDTVSSVTLPNLNPTGATLFCCKL 81 (89)
T ss_dssp SEEETTS-EEEEEEE-CCCHCT-STTCEEEECS-SCESTCGCEEEESTTEEEEEESS--SSEEEEEEEEE
T ss_pred CEEeCCCCEEEEEEEECCCCCCcccceEEEEEC-CEECChhHcceeCCeEEEEEEccCCCCCceEEEEEE
Confidence 67789999999999883 24567999999 667766655555444 6777777433 4566653
No 326
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=78.09 E-value=26 Score=28.84 Aligned_cols=30 Identities=20% Similarity=0.302 Sum_probs=25.4
Q ss_pred ceeceEEEcCCCCCC-eEEEEEEEEcCCCCC
Q psy8771 250 IITTYYTVRNLSPYT-EYEFYIIAVNNLGRG 279 (904)
Q Consensus 250 ~~~~~~~i~~L~p~~-~Y~~~v~a~n~~g~s 279 (904)
...+.|.|.++...+ .+.|.|.|.|.+|..
T Consensus 61 g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G~d 91 (98)
T cd05898 61 GVLSTLTINNIMEADFQTHYNCTAWNSFGSG 91 (98)
T ss_pred CcEEEEEECCCccccCCcEEEEEEEeCCccc
Confidence 456889999998766 689999999999965
No 327
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=77.32 E-value=20 Score=29.29 Aligned_cols=72 Identities=17% Similarity=0.293 Sum_probs=42.3
Q ss_pred cCCeEEEEEeCCCccceEEEEEEEeCCCCCCeEEe----ecceeceEEEcCCCCCCeEEEEEEEEcC---CCCCCCCCCe
Q psy8771 213 TATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEI----SGIITTYYTVRNLSPYTEYEFYIIAVNN---LGRGPPSSPA 285 (904)
Q Consensus 213 ~~~sv~l~W~~~~~~~~~y~v~~~~~~~~~~~~~~----~~~~~~~~~i~~L~p~~~Y~~~v~a~n~---~g~s~~s~~~ 285 (904)
....++|.+.... ....|.+ ++. +........ .......+.|..+++++.+.|+|..... ...+.+|.++
T Consensus 14 ~G~~VTL~C~~~~-~~~~f~l-~k~-g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~~~~~~~wS~~Sdpl 90 (94)
T cd05711 14 SGENVTLQCHSDI-RFDRFIL-YKE-GRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSYNHSLYEWSAPSDPL 90 (94)
T ss_pred CCCeEEEEEecCC-CCCEEEE-EEC-CCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEECCCCCccccCCCCCe
Confidence 3467778876553 2334433 332 222222111 1234567899999999999999998532 3445666665
Q ss_pred EE
Q psy8771 286 VI 287 (904)
Q Consensus 286 ~~ 287 (904)
.+
T Consensus 91 ~l 92 (94)
T cd05711 91 KI 92 (94)
T ss_pred EE
Confidence 54
No 328
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=76.36 E-value=9.7 Score=29.67 Aligned_cols=27 Identities=30% Similarity=0.290 Sum_probs=20.5
Q ss_pred ceEEEcCCC---CC-CeEEEEEEEEcCCCCC
Q psy8771 253 TYYTVRNLS---PY-TEYEFYIIAVNNLGRG 279 (904)
Q Consensus 253 ~~~~i~~L~---p~-~~Y~~~v~a~n~~g~s 279 (904)
..+.|..+. +. +.+.|+|.|.|..|..
T Consensus 39 ~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~ 69 (77)
T cd05875 39 GTLVIDFSGGGRPEDYEGEYQCFARNNLGTA 69 (77)
T ss_pred ceEEEeccCCCCCCCCCEEEEEEEEeccceE
Confidence 467777653 33 5799999999999964
No 329
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=75.33 E-value=11 Score=27.29 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=22.9
Q ss_pred eceEEEcCCCCCCeEEEEEEEEcCCC
Q psy8771 252 TTYYTVRNLSPYTEYEFYIIAVNNLG 277 (904)
Q Consensus 252 ~~~~~i~~L~p~~~Y~~~v~a~n~~g 277 (904)
...+.|.+++..+.+.|+|.+.|..|
T Consensus 38 ~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 38 GSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CcEEEEeeCCcccCEEEEEEEecCCC
Confidence 36799999999999999999998765
No 330
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=75.25 E-value=12 Score=30.56 Aligned_cols=64 Identities=8% Similarity=-0.042 Sum_probs=40.4
Q ss_pred cCCeEEEEEeCC-CccceEEEEEEEeCCCCC----CeEEeecceeceEEEcCCCCCCeEEEEEEEEcCCCC
Q psy8771 213 TATSVRLDWTYP-SETLLYYVIQYKPKAANT----PYSEISGIITTYYTVRNLSPYTEYEFYIIAVNNLGR 278 (904)
Q Consensus 213 ~~~sv~l~W~~~-~~~~~~y~v~~~~~~~~~----~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~ 278 (904)
....+.|.+.+| +.+...|. |...+... .-.......+..|.|.+++..+.+.|.|.|.|....
T Consensus 17 eG~~~~L~C~pP~g~P~p~~~--W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~ 85 (96)
T cd05727 17 EGWGVVLFCDPPPHYPDLSYR--WLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSST 85 (96)
T ss_pred eCCcEEEeeCCCCCCCCCEEE--EEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccC
Confidence 356788999888 33333333 33322111 111122234578999999999999999999998654
No 331
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=75.12 E-value=13 Score=27.38 Aligned_cols=19 Identities=16% Similarity=0.300 Sum_probs=17.6
Q ss_pred eEEEcCCCCCCeEEEEEEE
Q psy8771 254 YYTVRNLSPYTEYEFYIIA 272 (904)
Q Consensus 254 ~~~i~~L~p~~~Y~~~v~a 272 (904)
.+.|.++.+.+.+.|+|.|
T Consensus 46 ~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 46 RLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp EEEESSCTGGGTEEEEEEE
T ss_pred EEEEccCCHHHCEEEEEEC
Confidence 4999999999999999986
No 332
>PHA03376 BARF1; Provisional
Probab=74.97 E-value=72 Score=29.64 Aligned_cols=43 Identities=21% Similarity=0.379 Sum_probs=28.7
Q ss_pred CCCeEEEEEEccCCCCeEEEeeCCccccC----CCCceeecceEEEE
Q psy8771 120 DSPLNLSCVAVGSPMPFVKWRKGQNIELT----PDDKLPVGRNVLTL 162 (904)
Q Consensus 120 g~~~~l~C~~~g~p~p~i~W~k~~~~~~~----~~~~~~~~~~~l~i 162 (904)
-+-.++.|...|.|.|.++|..+.|..-. .+..+.-.+++|.+
T Consensus 139 ~~~~~i~C~sggfP~P~~~Wle~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (221)
T PHA03376 139 FSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSV 185 (221)
T ss_pred CCeeEEEEecCCcCCchheeccccCCCCCCccccCceeecCCCcEEE
Confidence 35668999988999999999998554332 22334445555544
No 333
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=74.77 E-value=10 Score=30.94 Aligned_cols=27 Identities=4% Similarity=-0.258 Sum_probs=24.4
Q ss_pred ceEEEcCCCCCCeEEEEEEEEcCCCCC
Q psy8771 253 TYYTVRNLSPYTEYEFYIIAVNNLGRG 279 (904)
Q Consensus 253 ~~~~i~~L~p~~~Y~~~v~a~n~~g~s 279 (904)
..|.|.++.+.+.+.|.|.+.|..|..
T Consensus 60 ~~L~I~~~~~~DsG~Y~C~~~N~~g~~ 86 (94)
T cd05756 60 DLLWFLPAALEDSGLYTCVVRNSTYCM 86 (94)
T ss_pred CeEEEccCCcccCeEEEEEEcCCCccE
Confidence 578999999999999999999988763
No 334
>PF08329 ChitinaseA_N: Chitinase A, N-terminal domain; InterPro: IPR013540 This domain is found in a number of bacterial chitinases and similar viral proteins. It is organised into a fibronectin III module domain-like fold, comprising only beta strands. Its function is not known, but it may be involved in interaction with the enzyme substrate, chitin [, ]. It is separated by a hinge region from the catalytic domain (IPR001223 from INTERPRO); this hinge region is probably mobile, allowing the N-terminal domain to have different relative positions in solution []. ; GO: 0004568 chitinase activity; PDB: 2WLY_A 1EDQ_A 2WM0_A 1X6N_A 1NH6_A 2WK2_A 1EHN_A 2WLZ_A 1EIB_A 1FFR_A ....
Probab=74.45 E-value=16 Score=31.83 Aligned_cols=90 Identities=18% Similarity=0.190 Sum_probs=43.8
Q ss_pred cCCCEEEEEecCCCCCCCCccEEEEEEEEEEccCCCCccEEEEecC-cceEEecCCCCCceEEEEEEEeeCCCCCCCCCc
Q psy8771 728 LSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKN-QTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYP 806 (904)
Q Consensus 728 ~~~~~v~l~W~~~~~~~~~g~~~~Y~v~~~~~~~~~~~~~~~~~~~-~~~~~i~~L~p~t~Y~~~V~a~~~~g~g~~s~~ 806 (904)
...-.|.|+|+.-. +..-+.|.|++...- ....... .....+. ...+..|.++|..+|..|++. |.+
T Consensus 35 ~~~v~V~VtwN~Ws----G~~Gd~~kly~dG~~------V~tG~~~~~~~a~~~-~~~gG~y~~~VeLCN~~GCS~-S~~ 102 (133)
T PF08329_consen 35 NDQVDVSVTWNVWS----GTNGDTAKLYFDGVL------VWTGPSPQQKSATFT-VTKGGRYQMQVELCNADGCST-SAP 102 (133)
T ss_dssp -SSEEEEEEEE-SS----S---SEEEEEETTEE------EEEEE--SEEEEEEE-E-S-EEEEEEEEEEETTEEEE----
T ss_pred cCceEEEEEEEEec----CCCCCEEEEEECCEE------EEeCCCccCceEEEE-ecCCCEEEEEEEEECCCCccc-CCC
Confidence 45668899999663 334456777663211 0000001 2333444 346679999999999999765 556
Q ss_pred EEeecCCCCCCCCccCCcceeeC
Q psy8771 807 ITIRTHEDDPSEVCPTQNDFRKN 829 (904)
Q Consensus 807 ~~~~t~~~~P~~v~~~~~~W~~p 829 (904)
+.+.......+.+.++...|.+.
T Consensus 103 ~~V~VaDTDGsHl~pL~~~~~~n 125 (133)
T PF08329_consen 103 VEVVVADTDGSHLAPLPYNWDEN 125 (133)
T ss_dssp EEEEEE-TTSTTS--------TT
T ss_pred EEEEEeCCCccccccccCccccc
Confidence 77766555566677777777654
No 335
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=73.73 E-value=6.1 Score=31.32 Aligned_cols=27 Identities=15% Similarity=0.148 Sum_probs=24.0
Q ss_pred ceEEEcCCCCCCeEEEEEEEEcCCCCC
Q psy8771 253 TYYTVRNLSPYTEYEFYIIAVNNLGRG 279 (904)
Q Consensus 253 ~~~~i~~L~p~~~Y~~~v~a~n~~g~s 279 (904)
..+.|.++++.+.+.|.|.+.|..|..
T Consensus 51 ~~l~i~~~~~~d~g~Y~C~~~n~~g~~ 77 (85)
T cd05729 51 WTLILESVVPSDSGKYTCIVENKYGSI 77 (85)
T ss_pred EEEEEeECCcccCEEEEEEEEECCceE
Confidence 568999999999999999999988763
No 336
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=72.63 E-value=31 Score=28.26 Aligned_cols=24 Identities=13% Similarity=0.062 Sum_probs=21.7
Q ss_pred eceEEEcCCCCCCeEEEEEEEEcC
Q psy8771 252 TTYYTVRNLSPYTEYEFYIIAVNN 275 (904)
Q Consensus 252 ~~~~~i~~L~p~~~Y~~~v~a~n~ 275 (904)
...+.|.++++.+++.|+|.+...
T Consensus 61 ~~~L~I~nV~~~D~G~YtC~~~t~ 84 (95)
T cd05882 61 ELIISISNVQLSDEGEYTCSIFTM 84 (95)
T ss_pred eEEEEECCCCcccCEEEEEEEEee
Confidence 468999999999999999999873
No 337
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=72.36 E-value=22 Score=28.15 Aligned_cols=35 Identities=9% Similarity=0.020 Sum_probs=27.9
Q ss_pred eceEEEcCCCCCCeEEEEEEEEcCCCCCCCCCCeEE
Q psy8771 252 TTYYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVI 287 (904)
Q Consensus 252 ~~~~~i~~L~p~~~Y~~~v~a~n~~g~s~~s~~~~~ 287 (904)
...+.|..+.+.+.+.|+|.|.+..|... |..+.+
T Consensus 47 ~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~-s~~~~i 81 (83)
T cd05753 47 NSNLSIPQATLSDSGSYHCSGIIGSYDYS-SEPVSI 81 (83)
T ss_pred CceEEECccCHHHCEEEEEEEEeCCceec-CCCEEE
Confidence 36799999999999999999999988543 444433
No 338
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=71.57 E-value=12 Score=28.63 Aligned_cols=24 Identities=4% Similarity=-0.004 Sum_probs=21.8
Q ss_pred ceEEEcCCCCCCeEEEEEEEEcCC
Q psy8771 253 TYYTVRNLSPYTEYEFYIIAVNNL 276 (904)
Q Consensus 253 ~~~~i~~L~p~~~Y~~~v~a~n~~ 276 (904)
..+.|.+++..+.+.|+|.|.|..
T Consensus 36 ~~L~I~~v~~~D~G~YtC~a~~~~ 59 (72)
T cd07702 36 YSLVIKDVTEEDAGIYTILLGIKQ 59 (72)
T ss_pred CEEEECcCCHHHCEEEEEEEEccc
Confidence 469999999999999999999963
No 339
>KOG1225|consensus
Probab=71.28 E-value=7.1 Score=42.85 Aligned_cols=114 Identities=18% Similarity=0.228 Sum_probs=80.9
Q ss_pred CCceeecceEEEEeeecCCeEEEEEEEecCcceEE-EEEEEEEeecCCCCCCCCCCcceEEEeecCCeEEEEEeCCCccc
Q psy8771 150 DDKLPVGRNVLTLDRVTESENYTCIAASVLGVIET-STIVKVQCKYAPLLTLPVAPLDVKISEVTATSVRLDWTYPSETL 228 (904)
Q Consensus 150 ~~~~~~~~~~l~i~~l~d~g~Y~c~a~n~~g~~~~-~~~l~v~~~~~~~~~~P~~p~~l~~~~~~~~sv~l~W~~~~~~~ 228 (904)
..|+........|..+++...|.|......+.... -...... +.-..+..+.+.....+++.+.|..+....
T Consensus 410 ~~r~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~-------~~~~~~g~~~v~~~~~~s~e~~g~~~s~~~ 482 (525)
T KOG1225|consen 410 QGRVPGDANSVDIQGLEPGDEYNCSVNTVAANIGSLPKDKSET-------TVLCWNGGLCVDGETESSLEVGGPCPSSGT 482 (525)
T ss_pred ceeeccceeeeeeeeecCCcceeeehhhhhhhhccCCcccccc-------eEeecCCceeeeeeeeccccccCCCCCccc
Confidence 45666677888999999999999977655544221 1111111 334567788899999999999999998889
Q ss_pred eEEEEEEEeCCCCCCeEEeecceeceEEEcCCCCCCeEEEEE
Q psy8771 229 LYYVIQYKPKAANTPYSEISGIITTYYTVRNLSPYTEYEFYI 270 (904)
Q Consensus 229 ~~y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v 270 (904)
..|.+.+........+..-.....+.+...+|.|++.|...+
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~c~~~~~~~ 524 (525)
T KOG1225|consen 483 CGWEVRCGPCGNDGGVNAEPPPECTSYDRTGLGPCTEYEVSV 524 (525)
T ss_pred cceEEEeeecCcccccccCCCCCCCCCCccCcccccceeccc
Confidence 999999955444433333333366788999999999998754
No 340
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=71.14 E-value=8.2 Score=31.40 Aligned_cols=28 Identities=4% Similarity=-0.057 Sum_probs=24.8
Q ss_pred eceEEEcCCCCCCeEEEEEEEEcCCCCC
Q psy8771 252 TTYYTVRNLSPYTEYEFYIIAVNNLGRG 279 (904)
Q Consensus 252 ~~~~~i~~L~p~~~Y~~~v~a~n~~g~s 279 (904)
...+.|.++...+.+.|+|.|.|..+..
T Consensus 51 ~~~L~I~~v~~~DsG~YtC~~~n~~~~~ 78 (92)
T cd05757 51 GSKLLIQNVTEEDAGNYTCKLTFTHNGK 78 (92)
T ss_pred CCEEEEeeCChhhCEEEEEEEEecCCCE
Confidence 3679999999999999999999987753
No 341
>PF13750 Big_3_3: Bacterial Ig-like domain (group 3)
Probab=71.13 E-value=51 Score=30.09 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=20.0
Q ss_pred EcCCCCCcEEEEEEEEEecCCCC
Q psy8771 860 VTGLQPDTIYTIQVAALTRKGDG 882 (904)
Q Consensus 860 i~~L~p~t~Y~~~v~a~n~~G~g 882 (904)
+..|+.+..|++.|.|.+.+|.-
T Consensus 116 fpsle~~~~YtLtV~a~D~aGN~ 138 (158)
T PF13750_consen 116 FPSLEADDSYTLTVSATDKAGNQ 138 (158)
T ss_pred cCCcCCCCeEEEEEEEEecCCCE
Confidence 35788999999999999999963
No 342
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=70.70 E-value=19 Score=28.91 Aligned_cols=25 Identities=16% Similarity=0.057 Sum_probs=22.1
Q ss_pred ceEEEcCCCCCCeEEEEEEEEcCCC
Q psy8771 253 TYYTVRNLSPYTEYEFYIIAVNNLG 277 (904)
Q Consensus 253 ~~~~i~~L~p~~~Y~~~v~a~n~~g 277 (904)
..+.|.++++.+.+.|+|.|.+..+
T Consensus 51 ~~L~I~~~~~~D~G~Y~C~a~~~~~ 75 (89)
T cd04979 51 DGLLIRSVSPADAGVYTCQSVEHGF 75 (89)
T ss_pred CCEEEccCCHHHCEEEEEEEecCcc
Confidence 4589999999999999999998755
No 343
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=69.12 E-value=59 Score=26.15 Aligned_cols=75 Identities=17% Similarity=0.131 Sum_probs=46.2
Q ss_pred CCCCeEEcCCCCc-eEEecC--CCeEEEEEEccCCCCeEEEeeCCccccCCCCceeecceEEEEeeecCCeEEEEEEEec
Q psy8771 102 RVPPQFSIPPPAL-LEVMLD--SPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRNVLTLDRVTESENYTCIAASV 178 (904)
Q Consensus 102 ~~~P~~~~~~~~~-~~~~~g--~~~~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~l~i~~l~d~g~Y~c~a~n~ 178 (904)
..+++|+.++... +....+ +...|.+++.|. ...+.|+.| +..+.... ....+.+. +...|.|++++...
T Consensus 8 ~~~l~I~~P~~g~~~~~~~~~~~~~~l~l~a~~~-~~~~~W~vd-g~~~g~~~----~~~~~~~~-~~~~G~h~l~vvD~ 80 (89)
T PF06832_consen 8 GSPLRITSPPDGAVLALDPGIPERQPLVLKAAGG-RGPVYWFVD-GEPLGTTQ----PGHQLFWQ-PDRPGEHTLTVVDA 80 (89)
T ss_pred CCCCEEEecCCCCEEEeCCCCCccceEEEEEeCC-CCcEEEEEC-CEEcccCC----CCCeEEeC-CCCCeeEEEEEEcC
Confidence 5677788777652 222322 367888888888 558999999 76662211 11122221 24678999888877
Q ss_pred CcceE
Q psy8771 179 LGVIE 183 (904)
Q Consensus 179 ~g~~~ 183 (904)
.|...
T Consensus 81 ~G~~~ 85 (89)
T PF06832_consen 81 QGRSA 85 (89)
T ss_pred CCCEE
Confidence 77643
No 344
>KOG1948|consensus
Probab=67.65 E-value=1.4e+02 Score=34.71 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCCCeEEEEEEEEeC
Q psy8771 538 NQLTTISDLTPHTIYTIRVQAFTS 561 (904)
Q Consensus 538 ~~~~~~~~L~p~t~Y~~~V~a~~~ 561 (904)
.-.|.|.||.|+..|.++|.+.-.
T Consensus 945 nG~yRiRGL~Pdc~Y~V~vk~~~~ 968 (1165)
T KOG1948|consen 945 NGTYRIRGLLPDCEYQVHVKSYAD 968 (1165)
T ss_pred CCcEEEeccCCCceEEEEEeeccC
Confidence 346899999999999999998743
No 345
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=67.56 E-value=35 Score=27.82 Aligned_cols=21 Identities=24% Similarity=0.224 Sum_probs=18.0
Q ss_pred CCCCCeEEEEEEEEcCCCCCC
Q psy8771 260 LSPYTEYEFYIIAVNNLGRGP 280 (904)
Q Consensus 260 L~p~~~Y~~~v~a~n~~g~s~ 280 (904)
+.+.+.+.|+|.|.|..|...
T Consensus 71 ~~~~D~G~Y~C~a~N~~G~~~ 91 (100)
T cd07693 71 KGRSDEGVYVCVAHNSLGEAV 91 (100)
T ss_pred CCcCcCEEEEEEEEcccccee
Confidence 368899999999999999743
No 346
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=67.25 E-value=62 Score=27.61 Aligned_cols=28 Identities=11% Similarity=0.008 Sum_probs=24.3
Q ss_pred eeceEEEcCCCCCCeEEEEEEEEcCCCC
Q psy8771 251 ITTYYTVRNLSPYTEYEFYIIAVNNLGR 278 (904)
Q Consensus 251 ~~~~~~i~~L~p~~~Y~~~v~a~n~~g~ 278 (904)
...++.|.+|++.+++.|.|.+.|..+.
T Consensus 77 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 77 RDASILIWQLQPTDNGTYTCQVKNPPDV 104 (115)
T ss_pred CceEEEEeeCChhhCEEEEEEEEeCCCC
Confidence 3567999999999999999999987664
No 347
>PF13754 Big_3_4: Bacterial Ig-like domain (group 3)
Probab=66.23 E-value=18 Score=25.78 Aligned_cols=41 Identities=29% Similarity=0.394 Sum_probs=27.7
Q ss_pred eEEEEcCCCCCcEEEEEEEEEecCCCCCCCCceEEecCCCCC
Q psy8771 856 LELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKTPGGVP 897 (904)
Q Consensus 856 ~~~~i~~L~p~t~Y~~~v~a~n~~G~g~~s~~~~~~t~~~~p 897 (904)
-++.+..+ ..-.|.|+|.|.+.+|.........|.-...+|
T Consensus 14 Ws~t~~~~-~dG~y~itv~a~D~AGN~s~~~~~~~tiDttaP 54 (54)
T PF13754_consen 14 WSFTVPAL-ADGTYTITVTATDAAGNTSTSSSVTFTIDTTAP 54 (54)
T ss_pred EEEeCCCC-CCccEEEEEEEEeCCCCCCCccceeEEEeCCCC
Confidence 34566666 677999999999999975544444455444433
No 348
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=65.88 E-value=32 Score=28.09 Aligned_cols=26 Identities=8% Similarity=-0.040 Sum_probs=22.6
Q ss_pred eeceEEEcCCCCCCeEEEEEEEEcCC
Q psy8771 251 ITTYYTVRNLSPYTEYEFYIIAVNNL 276 (904)
Q Consensus 251 ~~~~~~i~~L~p~~~Y~~~v~a~n~~ 276 (904)
....|.|.++++.+.+.|.|.+.+..
T Consensus 60 ~~~sL~I~~v~~~DsG~Y~C~~~t~~ 85 (95)
T cd07701 60 HELSISISDVSLSDEGQYTCSLFTMP 85 (95)
T ss_pred CcEEEEECcCCcccCEEEEEEeEeec
Confidence 44679999999999999999998853
No 349
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=65.53 E-value=42 Score=27.30 Aligned_cols=25 Identities=12% Similarity=-0.024 Sum_probs=22.0
Q ss_pred eceEEEcCCCCCCeEEEEEEEEcCC
Q psy8771 252 TTYYTVRNLSPYTEYEFYIIAVNNL 276 (904)
Q Consensus 252 ~~~~~i~~L~p~~~Y~~~v~a~n~~ 276 (904)
...+.|.++++.+.+.|.|.+.+..
T Consensus 61 ~~~L~I~~v~~~DsG~Y~C~~~~~~ 85 (95)
T cd05717 61 ELSISISNVSLSDEGRYTCSLYTMP 85 (95)
T ss_pred eeEEEEccCCcccCEEEEEEEecCC
Confidence 4579999999999999999998764
No 350
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=63.57 E-value=53 Score=26.57 Aligned_cols=25 Identities=16% Similarity=0.121 Sum_probs=21.6
Q ss_pred ceEEEcCCCCCCeEEEEEEEEc-CCC
Q psy8771 253 TYYTVRNLSPYTEYEFYIIAVN-NLG 277 (904)
Q Consensus 253 ~~~~i~~L~p~~~Y~~~v~a~n-~~g 277 (904)
..+.|.++++.+++.|.|.|.+ ..+
T Consensus 53 ~~L~I~~~~~~DsG~Y~C~a~~~~~~ 78 (91)
T cd05871 53 RGLLLRSLQRSDAGVYTCTAVEHSFS 78 (91)
T ss_pred CeEEEeeCChhHCEEEEEEEEccCCe
Confidence 5699999999999999999985 443
No 351
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=62.97 E-value=31 Score=28.18 Aligned_cols=28 Identities=7% Similarity=-0.044 Sum_probs=24.3
Q ss_pred eeceEEEcCCCCCCeEEEEEEEEcCCCC
Q psy8771 251 ITTYYTVRNLSPYTEYEFYIIAVNNLGR 278 (904)
Q Consensus 251 ~~~~~~i~~L~p~~~Y~~~v~a~n~~g~ 278 (904)
....++|.+|++.+.+.|.|.+.|..++
T Consensus 63 g~~~L~I~~l~~sDsgtY~C~v~~~~~~ 90 (94)
T cd07690 63 GSFPLIIKNLKIEDSDTYICEVEDKKEE 90 (94)
T ss_pred CeEEEEECCCCHHHCEEEEEEECCccce
Confidence 3567999999999999999999887654
No 352
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=62.80 E-value=66 Score=25.08 Aligned_cols=55 Identities=13% Similarity=0.065 Sum_probs=34.3
Q ss_pred cCCeEEEEEeCCCccceEEEEEEEeCCCCCCeEEeecceeceEEEcCCCCCCeEEEEEEEEcC
Q psy8771 213 TATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEISGIITTYYTVRNLSPYTEYEFYIIAVNN 275 (904)
Q Consensus 213 ~~~sv~l~W~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~ 275 (904)
...+++|.+...+.+... .+.|...+. . +. .....|.|.++ ..+.+.|+|.|.|.
T Consensus 14 ~G~~V~L~C~~~~~p~~~-~~~W~kng~--~---l~-~~~~~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 14 QGEKVTLTCNGFNSPEQN-STQWYHNGK--L---LE-TTTNSYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred CCCCEEEEEeCCCCCCCc-cEEEEECCE--E---ee-ccCCeEEEeec-ccCCEEeEEECCCC
Confidence 345688888766433211 134444321 1 11 23467999999 99999999999874
No 353
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=59.46 E-value=79 Score=26.47 Aligned_cols=71 Identities=7% Similarity=0.099 Sum_probs=41.2
Q ss_pred eEEEeecCCeEEEEEeCCCccceEE-EEEEEeCCCCCC----eE-EeecceeceEEEcCCCCCCeEEEEEEEEcCCC
Q psy8771 207 VKISEVTATSVRLDWTYPSETLLYY-VIQYKPKAANTP----YS-EISGIITTYYTVRNLSPYTEYEFYIIAVNNLG 277 (904)
Q Consensus 207 l~~~~~~~~sv~l~W~~~~~~~~~y-~v~~~~~~~~~~----~~-~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g 277 (904)
|.+......-..+.|.........+ ...|........ +. ...-....++.|.+++..+.+.|+|.+.+...
T Consensus 18 L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G~Y~~~v~~~~~ 94 (105)
T cd05774 18 LLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTGFYTLQTITTNF 94 (105)
T ss_pred EEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCEEEEEEEEeCCc
Confidence 3333334466789999873333222 334443311110 10 11112236899999999999999999998764
No 354
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=58.08 E-value=56 Score=26.55 Aligned_cols=26 Identities=19% Similarity=0.175 Sum_probs=20.3
Q ss_pred eEEEcCC-----CCCCeEEEEEEEEcC-CCCC
Q psy8771 254 YYTVRNL-----SPYTEYEFYIIAVNN-LGRG 279 (904)
Q Consensus 254 ~~~i~~L-----~p~~~Y~~~v~a~n~-~g~s 279 (904)
.+.|.++ .+.+.+.|+|.|.|. .|..
T Consensus 55 ~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~ 86 (95)
T cd05722 55 SLLITSVVHSKHNKPDEGFYQCVAQNDSLGSI 86 (95)
T ss_pred eEEEeeeeccCCCCCcCEEEEEEEECCccCcE
Confidence 3555555 578899999999999 8864
No 355
>PF13754 Big_3_4: Bacterial Ig-like domain (group 3)
Probab=57.87 E-value=38 Score=24.17 Aligned_cols=36 Identities=28% Similarity=0.333 Sum_probs=25.1
Q ss_pred eEEecCCCCCceEEEEEEEeeCCCCCCCCCcEEeecC
Q psy8771 776 SFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTH 812 (904)
Q Consensus 776 ~~~i~~L~p~t~Y~~~V~a~~~~g~g~~s~~~~~~t~ 812 (904)
++.+..+ ....|.|.|.|.+..|.........|...
T Consensus 15 s~t~~~~-~dG~y~itv~a~D~AGN~s~~~~~~~tiD 50 (54)
T PF13754_consen 15 SFTVPAL-ADGTYTITVTATDAAGNTSTSSSVTFTID 50 (54)
T ss_pred EEeCCCC-CCccEEEEEEEEeCCCCCCCccceeEEEe
Confidence 4556666 56799999999999997655444444433
No 356
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=57.59 E-value=56 Score=27.00 Aligned_cols=27 Identities=11% Similarity=-0.032 Sum_probs=23.6
Q ss_pred eeceEEEcCCCCCCeEEEEEEEEc-CCC
Q psy8771 251 ITTYYTVRNLSPYTEYEFYIIAVN-NLG 277 (904)
Q Consensus 251 ~~~~~~i~~L~p~~~Y~~~v~a~n-~~g 277 (904)
.+.++.|.+|+..+++.|+|...+ ..|
T Consensus 61 ~daSi~i~nl~~~D~G~Y~C~v~t~P~g 88 (99)
T cd05886 61 EDGTISLSRLELEDEGVYICEFATFPTG 88 (99)
T ss_pred CcceEEEcCCccccCEEEEEEEEeCCCC
Confidence 458899999999999999999988 444
No 357
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=56.81 E-value=37 Score=27.44 Aligned_cols=59 Identities=22% Similarity=0.304 Sum_probs=32.9
Q ss_pred CeEEEEE-EccCCCCeEEEeeCCccccCCCCceeecceEEEEee------e--cCCeEEEEEEEecCcc
Q psy8771 122 PLNLSCV-AVGSPMPFVKWRKGQNIELTPDDKLPVGRNVLTLDR------V--TESENYTCIAASVLGV 181 (904)
Q Consensus 122 ~~~l~C~-~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~l~i~~------l--~d~g~Y~c~a~n~~g~ 181 (904)
.+.-.|. +.|.|...|+|.-+-++.. ........+++..+.. . .++-.-+|.+......
T Consensus 22 v~VA~CiSa~GrPpa~ItW~t~l~G~~-etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~ 89 (98)
T cd05890 22 MLVATCVSANGKPPSVVRWDTRLKGEA-EFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRNDR 89 (98)
T ss_pred EEEEEEEcCCCcCCcEeEEEccCCCce-eeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEecccc
Confidence 3445797 7799999999997632222 1111112233333322 1 4777788888765433
No 358
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=56.24 E-value=18 Score=27.44 Aligned_cols=25 Identities=20% Similarity=0.193 Sum_probs=21.9
Q ss_pred ceeceEEEcCCCCCCeEEEEEEEEc
Q psy8771 250 IITTYYTVRNLSPYTEYEFYIIAVN 274 (904)
Q Consensus 250 ~~~~~~~i~~L~p~~~Y~~~v~a~n 274 (904)
.....+.|.++...+.+.|+|.|.|
T Consensus 51 ~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 51 SSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred ceeeEEEEccCCHHhCcEEEEEEEC
Confidence 4457799999999999999999986
No 359
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=56.15 E-value=31 Score=27.67 Aligned_cols=24 Identities=13% Similarity=0.034 Sum_probs=21.5
Q ss_pred ceEEEcCCCCCCeEEEEEEEEcCC
Q psy8771 253 TYYTVRNLSPYTEYEFYIIAVNNL 276 (904)
Q Consensus 253 ~~~~i~~L~p~~~Y~~~v~a~n~~ 276 (904)
..+.|.+++..+.+.|+|.|.+..
T Consensus 48 ~~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 48 DGLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred CcEEEeCCCHHHCEEEEEEEEecc
Confidence 468999999999999999998863
No 360
>PF14292 SusE: SusE outer membrane protein
Probab=53.39 E-value=1.5e+02 Score=25.61 Aligned_cols=71 Identities=14% Similarity=0.173 Sum_probs=41.3
Q ss_pred eEEEecCCceEEEEecCCCCCCC-ceeeEEEEEEeCCCCCCcceEEEeecC-ceEEE-----------EcCCCCCCeEEE
Q psy8771 488 VQVRPLSSSTMVIQWDEPETPNG-QITGYKVYYTQDQSLPMSAWETQVVDN-NQLTT-----------ISDLTPHTIYTI 554 (904)
Q Consensus 488 l~v~~~~~~~~~l~W~~p~~~~~-~i~~Y~v~~~~~~~~~~~~~~~~~~~~-~~~~~-----------~~~L~p~t~Y~~ 554 (904)
+.+.......++++|+++..... ....|.|++...+..-..........+ ..+.. --|+.|+....+
T Consensus 37 i~L~~~~~~a~tftW~~~~~~~~~a~v~Y~lq~~~~~~~F~~~~~~~~~~~~~~s~~~t~~eLN~~l~~~g~~~~~~~~l 116 (122)
T PF14292_consen 37 IVLDEASDNAVTFTWTAADYGGPDAPVTYTLQFDKKGNDFSSPVEIVTTDNGSTSVSITVKELNSILLKLGLEPGEAGTL 116 (122)
T ss_pred EEecccCCceEEEEEECCccCCCCCceEEEEEEeccCCCccCcEEEEeecCcceeEEecHHHHHHHHHHcCCCCCceEEE
Confidence 44444455689999999876544 566899999885532222221221111 23322 235678877777
Q ss_pred EEEE
Q psy8771 555 RVQA 558 (904)
Q Consensus 555 ~V~a 558 (904)
.+|-
T Consensus 117 ~~rV 120 (122)
T PF14292_consen 117 YWRV 120 (122)
T ss_pred EEEE
Confidence 7664
No 361
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=52.62 E-value=1.2e+02 Score=24.48 Aligned_cols=76 Identities=18% Similarity=0.208 Sum_probs=47.1
Q ss_pred CCCCceEEecCCCeEEEEEEccCCCC-eEEEeeCCcc-ccCCCCceeecceEEEEeeecCCeEEEEEEEecCcceEEEEE
Q psy8771 110 PPPALLEVMLDSPLNLSCVAVGSPMP-FVKWRKGQNI-ELTPDDKLPVGRNVLTLDRVTESENYTCIAASVLGVIETSTI 187 (904)
Q Consensus 110 ~~~~~~~~~~g~~~~l~C~~~g~p~p-~i~W~k~~~~-~~~~~~~~~~~~~~l~i~~l~d~g~Y~c~a~n~~g~~~~~~~ 187 (904)
.|.. ..+..|+++.+.|..+ .|.| .+.|.-.-+. .+.. ..+-..+.|.|++.+..-.|.+.-...+..+++.
T Consensus 9 ~P~~-~vV~~G~Sv~VNCSts-C~~p~~~GLET~L~k~~~~~----g~~W~~f~LsnV~~ds~~~C~~~C~g~Q~~~~~~ 82 (91)
T PF03921_consen 9 SPEE-PVVPPGGSVWVNCSTS-CPQPEKIGLETSLSKTELDS----GPQWKAFQLSNVTEDSSPLCFFNCSGEQSSASAN 82 (91)
T ss_dssp ESSE-EEEETTEEEEEEEEES-SSS-SEEEEESSSEEEEEEE----ETTEEEEEEEEE-SCEEEEEEEEETTEEEEEEEE
T ss_pred ECCc-cEECCCCCEEEEEcCC-CCCCCcceEEEecCCcccCC----CCcEEEEEEEccccCCeEEEEEEcCCeEEEeEEe
Confidence 3455 8999999999999974 4444 3444432110 0100 0133478889997778888988765445667777
Q ss_pred EEEE
Q psy8771 188 VKVQ 191 (904)
Q Consensus 188 l~v~ 191 (904)
++|.
T Consensus 83 ItVY 86 (91)
T PF03921_consen 83 ITVY 86 (91)
T ss_dssp EEEE
T ss_pred eEEe
Confidence 7777
No 362
>smart00409 IG Immunoglobulin.
Probab=52.25 E-value=1e+02 Score=23.49 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=23.6
Q ss_pred eceEEEcCCCCCCeEEEEEEEEcCCCC
Q psy8771 252 TTYYTVRNLSPYTEYEFYIIAVNNLGR 278 (904)
Q Consensus 252 ~~~~~i~~L~p~~~Y~~~v~a~n~~g~ 278 (904)
...+.|.+++..+.+.|+|.+.+..+.
T Consensus 50 ~~~l~i~~~~~~d~G~Y~C~v~~~~~~ 76 (86)
T smart00409 50 NSTLTISNVTPEDSGTYTCAATNSSGS 76 (86)
T ss_pred eeEEEEEeeccccCeEEEEEEEcCCCe
Confidence 578999999999999999999977654
No 363
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=52.25 E-value=1e+02 Score=23.49 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=23.6
Q ss_pred eceEEEcCCCCCCeEEEEEEEEcCCCC
Q psy8771 252 TTYYTVRNLSPYTEYEFYIIAVNNLGR 278 (904)
Q Consensus 252 ~~~~~i~~L~p~~~Y~~~v~a~n~~g~ 278 (904)
...+.|.+++..+.+.|+|.+.+..+.
T Consensus 50 ~~~l~i~~~~~~d~G~Y~C~v~~~~~~ 76 (86)
T smart00410 50 NSTLTISNVTPEDSGTYTCAATNSSGS 76 (86)
T ss_pred eeEEEEEeeccccCeEEEEEEEcCCCe
Confidence 578999999999999999999977654
No 364
>PF14292 SusE: SusE outer membrane protein
Probab=52.17 E-value=1.6e+02 Score=25.48 Aligned_cols=70 Identities=19% Similarity=0.238 Sum_probs=41.3
Q ss_pred cEEEecCCCEEEEEecCCCCCCCCc-cEEEEEEEEEEccCCCCccEEEEec-C-cceEEe-----------cCCCCCceE
Q psy8771 723 VSCEPLSSTSIRISWEPPPVERSNG-HIVYYKLQFVETGRSDSEASIVTLK-N-QTSFVL-----------DELKKWTEY 788 (904)
Q Consensus 723 l~~~~~~~~~v~l~W~~~~~~~~~g-~~~~Y~v~~~~~~~~~~~~~~~~~~-~-~~~~~i-----------~~L~p~t~Y 788 (904)
+.........++++|+++.. ... ....|.|++...+.+.......... . .+++.+ -|+.++...
T Consensus 37 i~L~~~~~~a~tftW~~~~~--~~~~a~v~Y~lq~~~~~~~F~~~~~~~~~~~~~~s~~~t~~eLN~~l~~~g~~~~~~~ 114 (122)
T PF14292_consen 37 IVLDEASDNAVTFTWTAADY--GGPDAPVTYTLQFDKKGNDFSSPVEIVTTDNGSTSVSITVKELNSILLKLGLEPGEAG 114 (122)
T ss_pred EEecccCCceEEEEEECCcc--CCCCCceEEEEEEeccCCCccCcEEEEeecCcceeEEecHHHHHHHHHHcCCCCCceE
Confidence 44443456799999999843 222 4568999998865433322222211 1 233333 367888887
Q ss_pred EEEEEE
Q psy8771 789 RIWVLA 794 (904)
Q Consensus 789 ~~~V~a 794 (904)
.+.+|.
T Consensus 115 ~l~~rV 120 (122)
T PF14292_consen 115 TLYWRV 120 (122)
T ss_pred EEEEEE
Confidence 777764
No 365
>PF13753 SWM_repeat: Putative flagellar system-associated repeat
Probab=51.93 E-value=1.5e+02 Score=30.86 Aligned_cols=124 Identities=18% Similarity=0.266 Sum_probs=61.0
Q ss_pred ecCCCCCceEEEEEEEeeCCCCCCCCCcEEeecCCCCCCC-CccCCc-------------cee--eCCCCCceeeeeeee
Q psy8771 779 LDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDPSE-VCPTQN-------------DFR--KNKKTNGSNFKGGYL 842 (904)
Q Consensus 779 i~~L~p~t~Y~~~V~a~~~~g~g~~s~~~~~~t~~~~P~~-v~~~~~-------------~W~--~p~~~~~~~~~~~~~ 842 (904)
+..|..+..|.+.|.+.+..|.... ....+.-.-.+|.. +..+.. +-. ......+........
T Consensus 5 ~~~l~~d~~~~v~vt~tD~aGN~~~-~t~~~~vDt~~P~v~i~~~~~~~~~~~~~~~~~~t~s~tvs~~~~g~~v~v~~~ 83 (317)
T PF13753_consen 5 VQSLSADGTYTVSVTVTDAAGNTST-ATQSITVDTTAPTVTITSIADDDIINGDEATNTVTFSGTVSGAEPGSTVTVTIN 83 (317)
T ss_pred hhhccCCCcEEEEEEEEeCCCCeee-eeEEEEEecCCCceeeecccCCCccccceeeeeeEEEEEecCCCCCCEEEEEEC
Confidence 4678888999999999999987543 33334433334422 111100 111 000111111111111
Q ss_pred cCCceEEecCCCeeEEEEc---CCCCCcEEEEEEE-EEecCCCCCCCCceEEecCCCCCCCCcCCC
Q psy8771 843 NDPMRFDVSDGGALELNVT---GLQPDTIYTIQVA-ALTRKGDGDRSKPETIKTPGGVPNRPHVNL 904 (904)
Q Consensus 843 ~~~~~~~~~~~~~~~~~i~---~L~p~t~Y~~~v~-a~n~~G~g~~s~~~~~~t~~~~p~~p~~~~ 904 (904)
+............-++.+. .|..| .|.|.|. +.+.+|.........+.-...+|.+|.+.+
T Consensus 84 g~~~t~~~~~~G~ws~t~~~~~~l~~g-~~ti~v~~~tD~aGN~~t~~s~~~~vDt~~~~~p~vti 148 (317)
T PF13753_consen 84 GTTGTLTADADGNWSVTVTPSDDLPDG-DYTITVTTVTDAAGNTSTAASQTFTVDTTAPTAPTVTI 148 (317)
T ss_pred CEEEEEEEecCCcEEEeeccccccccC-cceeEEEEEEccCCccccccccccccccccccccccce
Confidence 1111011111112244444 35666 9999999 999888754333445555555566676643
No 366
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=51.69 E-value=1.3e+02 Score=24.56 Aligned_cols=26 Identities=12% Similarity=0.071 Sum_probs=22.2
Q ss_pred ceeceEEEcCCCCCCeEEEEEEEEcC
Q psy8771 250 IITTYYTVRNLSPYTEYEFYIIAVNN 275 (904)
Q Consensus 250 ~~~~~~~i~~L~p~~~Y~~~v~a~n~ 275 (904)
....+++|.+++..+++.|.|.+...
T Consensus 59 ~~~~tL~I~~vq~~D~G~Y~Cqv~t~ 84 (95)
T cd05881 59 SNELRVSLSNVSLSDEGRYFCQLYTD 84 (95)
T ss_pred CCEEEEEECcCCcccCEEEEEEEEcc
Confidence 44567999999999999999998763
No 367
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=50.66 E-value=46 Score=27.24 Aligned_cols=26 Identities=8% Similarity=-0.143 Sum_probs=22.6
Q ss_pred eceEEEcCCCCCCeE-EEEEEEEcCCC
Q psy8771 252 TTYYTVRNLSPYTEY-EFYIIAVNNLG 277 (904)
Q Consensus 252 ~~~~~i~~L~p~~~Y-~~~v~a~n~~g 277 (904)
+..|.|.++++.+.+ .|.|.|.|...
T Consensus 57 ~GnL~fs~v~~~D~g~~Y~C~a~~~~~ 83 (95)
T cd05845 57 NGNLYFANVEEQDSHPDYICHAHFPGL 83 (95)
T ss_pred CceEEEEEEehhhCCCCeEEEEEcccc
Confidence 478999999999998 79999998753
No 368
>PHA02579 7 baseplate wedge subunit; Provisional
Probab=50.38 E-value=52 Score=37.33 Aligned_cols=74 Identities=20% Similarity=0.302 Sum_probs=51.8
Q ss_pred CCCCeEEEecCCceEEEEecCCCCCCCceeeEEEEEEeCCCC-------CCcceEEEeecCceEEEEcCCCCCCeEEEEE
Q psy8771 484 APRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSL-------PMSAWETQVVDNNQLTTISDLTPHTIYTIRV 556 (904)
Q Consensus 484 ~p~~l~v~~~~~~~~~l~W~~p~~~~~~i~~Y~v~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~~V 556 (904)
+...|++...+.+.+.|+|+.. |.-..|.|++...... ....|...-.+.....--..+.|.+.|.+||
T Consensus 7 ~vtslrI~kLsaN~v~l~WddV----G~NFyY~Ve~a~t~~~~g~~ip~~~~~w~nlg~T~~~~wFed~~~p~t~Yk~Rv 82 (1030)
T PHA02579 7 SVTSLRIDKLSANQVYLTWDDV----GANFYYFVELAETRDADGELIPDDELRWINLGYTANNEWFEDKLQPNTYYKFRV 82 (1030)
T ss_pred cccEEEhhhhccceEEEEeecc----CCceEEEEEEEeeccCCCccCCCccccceecCcccchhhhhhccCCcceEEEEE
Confidence 4567888889999999999963 4458899999865422 1233555444444444445599999999999
Q ss_pred EEEeC
Q psy8771 557 QAFTS 561 (904)
Q Consensus 557 ~a~~~ 561 (904)
+..-.
T Consensus 83 ~~~~q 87 (1030)
T PHA02579 83 AVAAQ 87 (1030)
T ss_pred Eeecc
Confidence 87654
No 369
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=49.99 E-value=53 Score=27.22 Aligned_cols=60 Identities=8% Similarity=0.111 Sum_probs=38.6
Q ss_pred eEEEEEEc--cCCCCe--EEEeeCCccccCC---CCcee--ecceEEEEeee--cCCeEEEEEEEecCcceE
Q psy8771 123 LNLSCVAV--GSPMPF--VKWRKGQNIELTP---DDKLP--VGRNVLTLDRV--TESENYTCIAASVLGVIE 183 (904)
Q Consensus 123 ~~l~C~~~--g~p~p~--i~W~k~~~~~~~~---~~~~~--~~~~~l~i~~l--~d~g~Y~c~a~n~~g~~~ 183 (904)
..++++.. ..+... ++|..+ ...... +.|+. ..+..|.|+.+ .|+|.|...+.+..|...
T Consensus 28 ~sv~WK~~l~s~~~~~~IltW~n~-~~~~~~~~~n~r~~F~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~ 98 (108)
T PF11465_consen 28 YSVQWKMQLPSQKKFEVILTWKND-STPSYNSSFNNRFNFTSENLALLIKAAQPQDSGLYCLEVTNESGKVC 98 (108)
T ss_dssp EEEEEEEEETSSSEEE-EEEEETT-EEEESSTTHHHHEEEETTTTEEEESS-SGGG-EEEEEEEEETTSCEE
T ss_pred EEEEEEEEcccCCceEEEEEEcCC-CcccccccccceEeeeccCceEEEeecCcccCceEEEEEEcCCCcEE
Confidence 45666655 444443 567766 443322 23443 36789999998 699999999999999863
No 370
>cd02848 Chitinase_N_term Chitinase N-terminus domain. Chitinases hydrolyze the abundant natural biopolymer chitin, producing smaller chito-oligosaccharides. Chitin consists of multiple N-acetyl-D-glucosamine (NAG) residues connected via beta-1,4-glycosidic linkages and is an important structural element of fungal cell wall and arthropod exoskeletons. On the basis of the mode of chitin hydrolysis, chitinases are classified as random, endo-, and exo-chitinases and based on sequence criteria, chitinases belong to families 18 and 19 of glycosyl hydrolases. The N-terminus of chitinase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitob
Probab=49.95 E-value=1.5e+02 Score=24.69 Aligned_cols=75 Identities=16% Similarity=0.272 Sum_probs=41.4
Q ss_pred EEecCCceEEEEecCCCCCCCceeeEEEEEEeCCCCCCcceEEEeecCceEEEEcCCCCCCeEEEEEEEEeCCCCCCCCC
Q psy8771 490 VRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVGPGPLSA 569 (904)
Q Consensus 490 v~~~~~~~~~l~W~~p~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~~V~a~~~~g~~~~S~ 569 (904)
|.....-.+.|+|+.=... .-..|.|.+.... .|.-...+......+. ...|-.|.++|+.+|..|.+ .|.
T Consensus 28 Vk~~d~v~V~V~wnvWsG~--~Gd~a~vl~dg~~-----V~~G~~~~~~~~at~~-v~kgG~y~m~V~lCn~dGCS-~S~ 98 (106)
T cd02848 28 VKVKDAADVSVKWNAWSGD--PGDTYKVLLDGKE-----VWSGALTGSSGTATFK-VGKGGRYQMQVALCNGDGCS-TSA 98 (106)
T ss_pred EEeccceEEEEEEeeecCC--CCcEEEEEECCeE-----EEcccCCCCccEEEEE-eCCCCeEEEEEEEECCCCcc-CcC
Confidence 3345556889999883221 2256666553211 0111111122334444 45567999999999999965 455
Q ss_pred cEEE
Q psy8771 570 PVLV 573 (904)
Q Consensus 570 ~~~~ 573 (904)
+..+
T Consensus 99 ~~~I 102 (106)
T cd02848 99 AKEI 102 (106)
T ss_pred CEEE
Confidence 5443
No 371
>PF13750 Big_3_3: Bacterial Ig-like domain (group 3)
Probab=49.19 E-value=2.1e+02 Score=26.13 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=20.5
Q ss_pred EeCCCCCcEEEEEEEEEcCCCCC
Q psy8771 679 LTGLYPNTLYYIWLAAQSPRGEG 701 (904)
Q Consensus 679 l~~L~p~t~Y~v~V~a~~~~G~~ 701 (904)
+..|+.+..|.+.|.|.+..|..
T Consensus 116 fpsle~~~~YtLtV~a~D~aGN~ 138 (158)
T PF13750_consen 116 FPSLEADDSYTLTVSATDKAGNQ 138 (158)
T ss_pred cCCcCCCCeEEEEEEEEecCCCE
Confidence 46789999999999999999874
No 372
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=48.84 E-value=1.4e+02 Score=23.86 Aligned_cols=26 Identities=12% Similarity=0.153 Sum_probs=23.5
Q ss_pred ceEEEcCCCCCCeEEEEEEEEcCCCC
Q psy8771 253 TYYTVRNLSPYTEYEFYIIAVNNLGR 278 (904)
Q Consensus 253 ~~~~i~~L~p~~~Y~~~v~a~n~~g~ 278 (904)
.++.|.+|++.+++.|+|......|.
T Consensus 57 ~sL~I~~l~~~DsG~Y~c~v~~~~~~ 82 (92)
T cd05741 57 GSLLIQNLTKEDSGTYTLQIISTNGV 82 (92)
T ss_pred ceEEEccCCchhcEEEEEEEEcCCCc
Confidence 78999999999999999999887653
No 373
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=48.77 E-value=1.1e+02 Score=31.89 Aligned_cols=68 Identities=15% Similarity=0.248 Sum_probs=45.6
Q ss_pred CCCceEEecCCCeEEEEEEcc--C-CCCeEEEeeCCccccC-----------------CCCceee----------cceEE
Q psy8771 111 PPALLEVMLDSPLNLSCVAVG--S-PMPFVKWRKGQNIELT-----------------PDDKLPV----------GRNVL 160 (904)
Q Consensus 111 ~~~~~~~~~g~~~~l~C~~~g--~-p~p~i~W~k~~~~~~~-----------------~~~~~~~----------~~~~l 160 (904)
+.+.+.+..|..+.|+|..+- . ....+.|... +-++. ..+.+.+ -..+|
T Consensus 270 ~~~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t-~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STL 348 (500)
T PHA02914 270 KFDEVMLEVGKRVDIECFFSMCGNENISNAKWIDT-GFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTL 348 (500)
T ss_pred ccceeEeccCcEEEEEEEEeecCCcccccceEEec-CCcccceeEEEEecceeecccccCCceEEEEecccccchhhceE
Confidence 334488888999999999884 3 3346789886 33221 1111211 13589
Q ss_pred EEeee--cCCeEEEEEEEecC
Q psy8771 161 TLDRV--TESENYTCIAASVL 179 (904)
Q Consensus 161 ~i~~l--~d~g~Y~c~a~n~~ 179 (904)
+|+++ +.+|-|+|.|....
T Consensus 349 TIkka~I~N~GCY~~~a~~g~ 369 (500)
T PHA02914 349 TIKKAHINNAGCYEAQAFMGK 369 (500)
T ss_pred EeeeEEEEcCCceEEEEecCc
Confidence 99988 69999999998643
No 374
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=47.84 E-value=92 Score=24.32 Aligned_cols=68 Identities=10% Similarity=-0.033 Sum_probs=35.0
Q ss_pred ceEEEeec-CCeEEEEEeCCCccceEEEEEEEeCCCCCCeEEeecceeceEEEcCCCCCCeEEEEEEEEcCCCC
Q psy8771 206 DVKISEVT-ATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEISGIITTYYTVRNLSPYTEYEFYIIAVNNLGR 278 (904)
Q Consensus 206 ~l~~~~~~-~~sv~l~W~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~ 278 (904)
+|.+...+ .....|+|...+.++............+..+ .....+.+......+...|+|.|.|....
T Consensus 3 ~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~-----~~~s~L~i~~~~~~~~~~y~C~a~n~~l~ 71 (82)
T cd05759 3 NLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRE-----TTVSTLPITPSDHDTGRTFTCRARNEALP 71 (82)
T ss_pred EEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeE-----EEEEEEEEeCceecCCCEEEEEEcCccCC
Confidence 45555443 2345788987654433211111100001100 12245667666666778999999987543
No 375
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=47.55 E-value=32 Score=28.13 Aligned_cols=26 Identities=12% Similarity=-0.027 Sum_probs=23.2
Q ss_pred ceEEEcCCCCCCeEEEEEEEEcCCCC
Q psy8771 253 TYYTVRNLSPYTEYEFYIIAVNNLGR 278 (904)
Q Consensus 253 ~~~~i~~L~p~~~Y~~~v~a~n~~g~ 278 (904)
..+.|.++.+.+.+.|+|.|.+..|.
T Consensus 55 ~~L~I~~v~~~D~G~YtC~~~~~~~g 80 (95)
T cd05897 55 TYLHIIDVSLNDSGYYTCKLQFTHEG 80 (95)
T ss_pred CEEEEEEcChhhCEEEEEEEEEeeCC
Confidence 56999999999999999999998653
No 376
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=47.22 E-value=76 Score=26.18 Aligned_cols=28 Identities=18% Similarity=0.163 Sum_probs=23.6
Q ss_pred ceeceEEEcCCCCCCeEEEEEEEEc-CCC
Q psy8771 250 IITTYYTVRNLSPYTEYEFYIIAVN-NLG 277 (904)
Q Consensus 250 ~~~~~~~i~~L~p~~~Y~~~v~a~n-~~g 277 (904)
....+++|.+|+..+++.|.|...+ ..|
T Consensus 61 ~~~~sL~I~nv~~sD~GtY~C~v~~~p~g 89 (100)
T cd05888 61 IADGALILRNAVQADEGKYKCRVITFPAG 89 (100)
T ss_pred CCceEEEEecCccccceEEEEEEEeCCCC
Confidence 3457899999999999999999887 444
No 377
>PF07353 Uroplakin_II: Uroplakin II; InterPro: IPR009952 This family contains uroplakin II, which is approximately 180 residues long and seems to be restricted to mammals. Uroplakin II is an integral membrane protein, and is one of the components of the apical plaques of mammalian urothelium formed by the asymmetric unit membrane - this is believed to play a role in strengthening the urothelial apical surface to prevent the cells from rupturing during bladder distension [].; GO: 0016044 cellular membrane organization, 0030176 integral to endoplasmic reticulum membrane
Probab=45.75 E-value=94 Score=27.66 Aligned_cols=26 Identities=31% Similarity=0.285 Sum_probs=21.5
Q ss_pred CCeeEEEEcCCCCCcEEEEEEEEEec
Q psy8771 853 GGALELNVTGLQPDTIYTIQVAALTR 878 (904)
Q Consensus 853 ~~~~~~~i~~L~p~t~Y~~~v~a~n~ 878 (904)
.....|.+.+|.||+.|+|+-...+.
T Consensus 99 trlsaYqVtNL~pGTkY~isY~Vtkg 124 (184)
T PF07353_consen 99 TRLSAYQVTNLQPGTKYYISYLVTKG 124 (184)
T ss_pred ccceeEEeeccCCCcEEEEEEEEecC
Confidence 45568999999999999999777643
No 378
>PHA03189 UL14 tegument protein; Provisional
Probab=45.15 E-value=1.4e+02 Score=29.94 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=17.6
Q ss_pred eEEecCCCeEEEEEEccC--CCCeE
Q psy8771 115 LEVMLDSPLNLSCVAVGS--PMPFV 137 (904)
Q Consensus 115 ~~~~~g~~~~l~C~~~g~--p~p~i 137 (904)
+.+..|+.+++.|.+... |...|
T Consensus 62 ~l~pyGdrvtVpC~fp~H~WPevsI 86 (348)
T PHA03189 62 LLVPYGDRVTVPCTFPTHDWPEVSI 86 (348)
T ss_pred cccCCCceeeeeeeecCCCCceeeE
Confidence 677899999999998854 44443
No 379
>TIGR03000 plancto_dom_1 Planctomycetes uncharacterized domain TIGR03000. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to six proteins per genome, and may be duplicated within a protein. The function is unknown.
Probab=43.02 E-value=54 Score=25.15 Aligned_cols=30 Identities=23% Similarity=0.372 Sum_probs=24.9
Q ss_pred cCCCeeEEEEcCCCCCcEEEEEEEE-EecCC
Q psy8771 851 SDGGALELNVTGLQPDTIYTIQVAA-LTRKG 880 (904)
Q Consensus 851 ~~~~~~~~~i~~L~p~t~Y~~~v~a-~n~~G 880 (904)
..+..++|.-.+|++|..|.++|+| ++..|
T Consensus 24 ~~G~~R~F~T~~L~~G~~y~Y~v~a~~~~dG 54 (75)
T TIGR03000 24 GTGTVRTFTTPPLEAGKEYEYTVTAEYDRDG 54 (75)
T ss_pred cCccEEEEECCCCCCCCEEEEEEEEEEecCC
Confidence 4567789999999999999999999 44455
No 380
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=42.36 E-value=73 Score=26.89 Aligned_cols=28 Identities=4% Similarity=-0.017 Sum_probs=23.8
Q ss_pred eeceEEEcCCCCCCeEEEEEEEEcCCCC
Q psy8771 251 ITTYYTVRNLSPYTEYEFYIIAVNNLGR 278 (904)
Q Consensus 251 ~~~~~~i~~L~p~~~Y~~~v~a~n~~g~ 278 (904)
...+++|.+|++.+++.|.|........
T Consensus 70 ~~asL~I~~l~~sD~G~Y~C~v~~~~~~ 97 (110)
T cd05878 70 GDASLEISRLRSSDSGVYRCEVMHGIED 97 (110)
T ss_pred CcEEEEECCCChhhCEEEEEEEEeCCCc
Confidence 4577999999999999999999886543
No 381
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=41.78 E-value=2e+02 Score=23.83 Aligned_cols=26 Identities=0% Similarity=-0.053 Sum_probs=23.1
Q ss_pred eeceEEEcCCCCCCeEEEEEEEEcCC
Q psy8771 251 ITTYYTVRNLSPYTEYEFYIIAVNNL 276 (904)
Q Consensus 251 ~~~~~~i~~L~p~~~Y~~~v~a~n~~ 276 (904)
....+.|.++++.+.+.|.|.+.+..
T Consensus 68 ~~~~L~I~~~~~~DsG~Y~C~~~~~~ 93 (109)
T cd04983 68 KSSSLHISAAQLSDSAVYFCALSESG 93 (109)
T ss_pred CEEEEEECCCCHHHCEEEEEEEecCC
Confidence 45789999999999999999998764
No 382
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=41.47 E-value=2.2e+02 Score=24.15 Aligned_cols=27 Identities=11% Similarity=-0.049 Sum_probs=23.4
Q ss_pred eceEEEcCCCCCCeEEEEEEEEcCCCC
Q psy8771 252 TTYYTVRNLSPYTEYEFYIIAVNNLGR 278 (904)
Q Consensus 252 ~~~~~i~~L~p~~~Y~~~v~a~n~~g~ 278 (904)
..+++|.++++.+++.|.|.+.|..+.
T Consensus 79 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~ 105 (116)
T cd05715 79 DASIVIHNLQFTDNGTYTCDVKNPPDI 105 (116)
T ss_pred eeEEEEeeCCcccCEEEEEEEEeCCCC
Confidence 467999999999999999999887553
No 383
>PF10342 GPI-anchored: Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family; InterPro: IPR018466 This entry represents glycoproteins involved in cell wall (1-->6)-beta-glucan assembly. In yeast a null mutation leads to severe growth defects, aberrant multi-budded morphology, and mating defects [, ]. The entry includes DRMIP and Hesp-379, which are involved in both fruiting body formation and in host attack respectively. Hesp-379 is a haustorially expressed secreted protein; the haustorium being the small sucker that penetrates host tissue [].
Probab=40.81 E-value=1.9e+02 Score=23.20 Aligned_cols=59 Identities=14% Similarity=0.148 Sum_probs=36.8
Q ss_pred CCeEEEEEeCCCccceEEEEEEEeCCCC--CCeEEee----cc-eeceEEE-cCCCCCCeEEEEEEE
Q psy8771 214 ATSVRLDWTYPSETLLYYVIQYKPKAAN--TPYSEIS----GI-ITTYYTV-RNLSPYTEYEFYIIA 272 (904)
Q Consensus 214 ~~sv~l~W~~~~~~~~~y~v~~~~~~~~--~~~~~~~----~~-~~~~~~i-~~L~p~~~Y~~~v~a 272 (904)
...++|+|+........|.|.+...... .....+. .. ....+.+ .+|.++..|.+++..
T Consensus 12 g~~~~I~W~~~~~~~~~~~I~L~~g~~~~~~~~~~ia~~v~~~~gs~~~~~p~~l~~~~~Y~i~~~~ 78 (93)
T PF10342_consen 12 GQPITITWTSDGTDPGNVTIYLCNGNNTNLNFVQTIASNVSNSDGSYTWTIPSDLPSGGDYFIQIVN 78 (93)
T ss_pred CCcEEEEEeCCCCCCcEEEEEEEcCCCCCcceeEEEEecccCCCCEEEEEcCCCCCCCCcEEEEEEE
Confidence 3679999998755557788888765441 1122221 11 2344555 458888888888873
No 384
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=39.89 E-value=1.5e+02 Score=24.76 Aligned_cols=26 Identities=8% Similarity=0.057 Sum_probs=22.5
Q ss_pred eeceEEEcCCCCCCeEEEEEEEEcCC
Q psy8771 251 ITTYYTVRNLSPYTEYEFYIIAVNNL 276 (904)
Q Consensus 251 ~~~~~~i~~L~p~~~Y~~~v~a~n~~ 276 (904)
....+.|.++++.+.+.|.|.+.+..
T Consensus 70 ~~~~L~I~~~~~~Dsg~Y~Ca~~~~~ 95 (110)
T cd05899 70 TRSSLTIKSAEPEDSAVYLCASSLGG 95 (110)
T ss_pred CccEEEECCCChhhCEEEEEEeeCCC
Confidence 45779999999999999999998753
No 385
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=38.58 E-value=2.1e+02 Score=23.45 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=23.6
Q ss_pred eeceEEEcCCCCCCeEEEEEEEEcCCC
Q psy8771 251 ITTYYTVRNLSPYTEYEFYIIAVNNLG 277 (904)
Q Consensus 251 ~~~~~~i~~L~p~~~Y~~~v~a~n~~g 277 (904)
...+++|.++++.+.+.|.|.+.+..+
T Consensus 65 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~ 91 (105)
T cd00099 65 SSFTLTISSLQPEDSAVYYCAVSLSGG 91 (105)
T ss_pred CEEEEEECCCCHHHCEEEEEEEecCCC
Confidence 457899999999999999999988654
No 386
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=38.57 E-value=2.5e+02 Score=23.98 Aligned_cols=29 Identities=14% Similarity=-0.083 Sum_probs=25.0
Q ss_pred ceeceEEEcCCCCCCeEEEEEEEEcCCCC
Q psy8771 250 IITTYYTVRNLSPYTEYEFYIIAVNNLGR 278 (904)
Q Consensus 250 ~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~ 278 (904)
..+.++.|.+|++.+.+.|+|...|.-+.
T Consensus 77 ~~daSI~I~nv~~sD~G~Y~C~v~n~p~~ 105 (116)
T cd05879 77 RKDGSIVIHNLDYTDNGTFTCDVKNPPDI 105 (116)
T ss_pred cCeeEEEEccCCcccCEEEEEEEEcCCCc
Confidence 34578999999999999999999987654
No 387
>PF11344 DUF3146: Protein of unknown function (DUF3146); InterPro: IPR021492 This family of proteins with unknown function appear to be restricted to Cyanobacteria.
Probab=38.35 E-value=21 Score=26.96 Aligned_cols=17 Identities=24% Similarity=0.311 Sum_probs=14.5
Q ss_pred EcCCCCCcEEEEEEEEE
Q psy8771 860 VTGLQPDTIYTIQVAAL 876 (904)
Q Consensus 860 i~~L~p~t~Y~~~v~a~ 876 (904)
...|+||..|.|.|+|.
T Consensus 64 DY~LEpGgdY~Ftirak 80 (80)
T PF11344_consen 64 DYQLEPGGDYSFTIRAK 80 (80)
T ss_pred ceeccCCCceEEEEecC
Confidence 34799999999999984
No 388
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=38.04 E-value=29 Score=29.04 Aligned_cols=29 Identities=3% Similarity=-0.008 Sum_probs=24.8
Q ss_pred ceeceEEEcCCCCCCeEEEEEEEEcCCCC
Q psy8771 250 IITTYYTVRNLSPYTEYEFYIIAVNNLGR 278 (904)
Q Consensus 250 ~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~ 278 (904)
....++.|.+++..+++.|+|.+.+..+.
T Consensus 65 ~~~~sL~I~~v~~sD~G~Y~C~v~~~~~~ 93 (106)
T cd05714 65 PGDASLVITDLRLEDSGRYRCEVIDGIED 93 (106)
T ss_pred CCcceEEECCCCHHHCEEEEEEEEcCCCc
Confidence 34588999999999999999999986543
No 389
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=37.05 E-value=44 Score=36.97 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=0.0
Q ss_pred ceEEE--cCCCCCCeEEEEEEEEcCCCC
Q psy8771 253 TYYTV--RNLSPYTEYEFYIIAVNNLGR 278 (904)
Q Consensus 253 ~~~~i--~~L~p~~~Y~~~v~a~n~~g~ 278 (904)
..++| ..|.++..|.|++.+.++.+.
T Consensus 148 ~~l~i~~~~l~~~~~y~f~ltv~k~~r~ 175 (440)
T PF02010_consen 148 SSLTIPASTLSPGSTYTFTLTVSKGSRS 175 (440)
T ss_dssp ----------------------------
T ss_pred EEEEEEhHHcCCCceEEEEEEEEeCCCC
Confidence 44555 679999999999999988763
No 390
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=36.96 E-value=1.7e+02 Score=24.06 Aligned_cols=29 Identities=17% Similarity=0.126 Sum_probs=23.3
Q ss_pred ceeceEEEcCCCCCCeEEEEEEEE-cCCCC
Q psy8771 250 IITTYYTVRNLSPYTEYEFYIIAV-NNLGR 278 (904)
Q Consensus 250 ~~~~~~~i~~L~p~~~Y~~~v~a~-n~~g~ 278 (904)
..+.++.|.+|+..+++.|+|... ...|.
T Consensus 57 ~~d~sl~i~nv~~~D~G~Y~C~v~tfP~G~ 86 (96)
T cd05887 57 LLDATIMLENVGFSDIGVYICKAVTFPLGN 86 (96)
T ss_pred CCccEEEEeCCCccccEEEEEEEEeCCCCC
Confidence 346889999999999999999964 45454
No 391
>PHA02579 7 baseplate wedge subunit; Provisional
Probab=36.94 E-value=1e+02 Score=35.24 Aligned_cols=70 Identities=26% Similarity=0.454 Sum_probs=49.5
Q ss_pred CCCcEEEecCCCEEEEEecCCCCCCCCccEEEEEEEEEEccCCC------CccEEEEec---CcceEEecCCCCCceEEE
Q psy8771 720 PQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSD------SEASIVTLK---NQTSFVLDELKKWTEYRI 790 (904)
Q Consensus 720 P~~l~~~~~~~~~v~l~W~~~~~~~~~g~~~~Y~v~~~~~~~~~------~~~~~~~~~---~~~~~~i~~L~p~t~Y~~ 790 (904)
...|++...+.+.+.|+|+.. |.--.|.|++....... ..-.+..++ ...++. +.|+|.+.|.+
T Consensus 8 vtslrI~kLsaN~v~l~WddV------G~NFyY~Ve~a~t~~~~g~~ip~~~~~w~nlg~T~~~~wFe-d~~~p~t~Yk~ 80 (1030)
T PHA02579 8 VTSLRIDKLSANQVYLTWDDV------GANFYYFVELAETRDADGELIPDDELRWINLGYTANNEWFE-DKLQPNTYYKF 80 (1030)
T ss_pred ccEEEhhhhccceEEEEeecc------CCceEEEEEEEeeccCCCccCCCccccceecCcccchhhhh-hccCCcceEEE
Confidence 467888888999999999977 44568999998653221 122344444 334444 55999999999
Q ss_pred EEEEee
Q psy8771 791 WVLAGT 796 (904)
Q Consensus 791 ~V~a~~ 796 (904)
||+..-
T Consensus 81 Rv~~~~ 86 (1030)
T PHA02579 81 RVAVAA 86 (1030)
T ss_pred EEEeec
Confidence 998754
No 392
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=35.96 E-value=1.7e+02 Score=23.90 Aligned_cols=25 Identities=20% Similarity=0.082 Sum_probs=21.3
Q ss_pred ceeceEEEcCCCCCCeEEEEEEEEc
Q psy8771 250 IITTYYTVRNLSPYTEYEFYIIAVN 274 (904)
Q Consensus 250 ~~~~~~~i~~L~p~~~Y~~~v~a~n 274 (904)
....+++|.+++..+++.|.|....
T Consensus 58 ~~~~sL~I~nv~~~D~G~Y~C~~~~ 82 (97)
T cd05846 58 LNSTSITIWNVTLEDEGCYKCIFNT 82 (97)
T ss_pred CCccEEEEeCCceeeeEEEEEEEEe
Confidence 3457899999999999999998653
No 393
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=35.79 E-value=1.5e+02 Score=24.66 Aligned_cols=28 Identities=7% Similarity=0.045 Sum_probs=24.5
Q ss_pred eceEEEcCCCCCCeEEEEEEEEcCCCCC
Q psy8771 252 TTYYTVRNLSPYTEYEFYIIAVNNLGRG 279 (904)
Q Consensus 252 ~~~~~i~~L~p~~~Y~~~v~a~n~~g~s 279 (904)
.+.+.|..|+..+.+.|++.|.|..+..
T Consensus 64 ~S~L~L~Rlk~~E~G~YTf~a~N~~~~~ 91 (101)
T cd05860 64 VSELHLTRLKGTEGGTYTFLVSNSDASA 91 (101)
T ss_pred EEEEEEeecChhhCcEEEEEEECCCCeE
Confidence 3678999999999999999999987653
No 394
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=34.69 E-value=2.5e+02 Score=22.81 Aligned_cols=25 Identities=16% Similarity=0.133 Sum_probs=21.5
Q ss_pred ceeceEEEcCCCCCCeEEEEEEEEc
Q psy8771 250 IITTYYTVRNLSPYTEYEFYIIAVN 274 (904)
Q Consensus 250 ~~~~~~~i~~L~p~~~Y~~~v~a~n 274 (904)
.....++|.++++.++..|.|.+.+
T Consensus 60 ~~~~~L~I~~~~~~Dsg~Y~C~~~~ 84 (98)
T cd04984 60 GNTASLTISGAQTEDEADYYCQVWD 84 (98)
T ss_pred CCEEEEEECCCChhhCEEEEEEEcc
Confidence 3456799999999999999998865
No 395
>PF11344 DUF3146: Protein of unknown function (DUF3146); InterPro: IPR021492 This family of proteins with unknown function appear to be restricted to Cyanobacteria.
Probab=33.52 E-value=29 Score=26.26 Aligned_cols=15 Identities=20% Similarity=0.251 Sum_probs=13.2
Q ss_pred CCCCCceEEEEEEEe
Q psy8771 781 ELKKWTEYRIWVLAG 795 (904)
Q Consensus 781 ~L~p~t~Y~~~V~a~ 795 (904)
.|+||..|.|.|+|.
T Consensus 66 ~LEpGgdY~Ftirak 80 (80)
T PF11344_consen 66 QLEPGGDYSFTIRAK 80 (80)
T ss_pred eccCCCceEEEEecC
Confidence 588999999999973
No 396
>KOG3834|consensus
Probab=33.29 E-value=72 Score=33.67 Aligned_cols=70 Identities=21% Similarity=0.286 Sum_probs=54.5
Q ss_pred CeEEEecCCceEEEEecCCC-CCCCceeeEEEEEEeCCCCCCcceEEEeecCceEEEEcCCCCCCeEEEEE
Q psy8771 487 DVQVRPLSSSTMVIQWDEPE-TPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLTTISDLTPHTIYTIRV 556 (904)
Q Consensus 487 ~l~v~~~~~~~~~l~W~~p~-~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~~V 556 (904)
.+.+.+.....++..|-.+. ..+|...+|.|+++.........|+...+....-+.+-||.+++.|.+-+
T Consensus 67 kltv~n~kt~~~R~v~I~ps~~wggqllGvsvrFcsf~~A~~~vwHvl~V~p~SPaalAgl~~~~DYivG~ 137 (462)
T KOG3834|consen 67 KLTVYNSKTQEVRIVEIVPSNNWGGQLLGVSVRFCSFDGAVESVWHVLSVEPNSPAALAGLRPYTDYIVGI 137 (462)
T ss_pred EEEEEecccceeEEEEecccccccccccceEEEeccCccchhheeeeeecCCCCHHHhcccccccceEecc
Confidence 34555555557788887754 45668999999999987777788988888666678899999999998866
No 397
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=33.19 E-value=36 Score=28.45 Aligned_cols=27 Identities=7% Similarity=0.058 Sum_probs=23.7
Q ss_pred eceEEEcCCCCCCeEEEEEEEEcCCCC
Q psy8771 252 TTYYTVRNLSPYTEYEFYIIAVNNLGR 278 (904)
Q Consensus 252 ~~~~~i~~L~p~~~Y~~~v~a~n~~g~ 278 (904)
..++.|.++++.+.+.|.|.+.++.+.
T Consensus 67 ~~sL~I~~v~~~DsG~Y~C~v~~~~~~ 93 (106)
T cd05877 67 DASLVITDLRLEDYGRYRCEVIDGLED 93 (106)
T ss_pred cEEEEEccCChHHCEEEEEEEEecccc
Confidence 467999999999999999999886654
No 398
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=32.86 E-value=14 Score=40.78 Aligned_cols=42 Identities=19% Similarity=0.310 Sum_probs=0.0
Q ss_pred CcceEEe--cCCCCCceEEEEEEEeeCCCCCCCCCcEEeecCCCCC
Q psy8771 773 NQTSFVL--DELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDP 816 (904)
Q Consensus 773 ~~~~~~i--~~L~p~t~Y~~~V~a~~~~g~g~~s~~~~~~t~~~~P 816 (904)
....+.| .-|.+|..|.|+|.+.+..+... ...+.+.+ ..+|
T Consensus 258 ~~~~Lvi~~~~l~~g~~Y~~~l~v~~~~~~~~-~a~~~~~~-n~pP 301 (440)
T PF02010_consen 258 SSSNLVIDPGVLEPGSTYTFRLTVTDSSGSSG-SASISFTV-NAPP 301 (440)
T ss_dssp ----------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccc-cccccccc-cccc
Confidence 3344444 36899999999999998776543 33355555 3344
No 399
>smart00089 PKD Repeats in polycystic kidney disease 1 (PKD1) and other proteins. Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.
Probab=32.15 E-value=2.4e+02 Score=21.73 Aligned_cols=62 Identities=13% Similarity=0.242 Sum_probs=35.2
Q ss_pred cCCCeEEEEEEccC-CCCeEEEeeCCccccCCCCceeecceEEEEeeecCCeEEEE--EEEecCcceEEEEEEE
Q psy8771 119 LDSPLNLSCVAVGS-PMPFVKWRKGQNIELTPDDKLPVGRNVLTLDRVTESENYTC--IAASVLGVIETSTIVK 189 (904)
Q Consensus 119 ~g~~~~l~C~~~g~-p~p~i~W~k~~~~~~~~~~~~~~~~~~l~i~~l~d~g~Y~c--~a~n~~g~~~~~~~l~ 189 (904)
.+..+.|.+...+. ....+.|..+++..... ... -......|.|.+ .+.|..|.......+.
T Consensus 13 ~~~~v~f~~~~~~~~~~~~~~W~fgdg~~~~~--------~~~-~~~y~~~G~y~v~l~v~n~~g~~~~~~~i~ 77 (79)
T smart00089 13 AGESVTFTATSSDDGSIVSYTWDFGDGTSSTG--------PTV-THTYTKPGTYTVTLTVTNAVGSASATVTVV 77 (79)
T ss_pred CCCEEEEEEECCCCCCeEEEEEEeCCCCccCC--------CCE-EEEeCCCcEEEEEEEEEcCCCcEEEEEEEE
Confidence 67788888887763 34567898764421111 011 111257789986 4667777444444443
No 400
>PF08329 ChitinaseA_N: Chitinase A, N-terminal domain; InterPro: IPR013540 This domain is found in a number of bacterial chitinases and similar viral proteins. It is organised into a fibronectin III module domain-like fold, comprising only beta strands. Its function is not known, but it may be involved in interaction with the enzyme substrate, chitin [, ]. It is separated by a hinge region from the catalytic domain (IPR001223 from INTERPRO); this hinge region is probably mobile, allowing the N-terminal domain to have different relative positions in solution []. ; GO: 0004568 chitinase activity; PDB: 2WLY_A 1EDQ_A 2WM0_A 1X6N_A 1NH6_A 2WK2_A 1EHN_A 2WLZ_A 1EIB_A 1FFR_A ....
Probab=32.12 E-value=1.5e+02 Score=25.97 Aligned_cols=72 Identities=13% Similarity=0.102 Sum_probs=36.9
Q ss_pred eecCCeEEEEEeCC-CccceEEEEEEEeCCCCCCeEEeecceeceEEEcCCCCCCeEEEEEEEEcCCCCCCCCCCeEEe
Q psy8771 211 EVTATSVRLDWTYP-SETLLYYVIQYKPKAANTPYSEISGIITTYYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVIT 288 (904)
Q Consensus 211 ~~~~~sv~l~W~~~-~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~s~~s~~~~~~ 288 (904)
......+.|+|+.= +..-+.|.|.+... .-+.--.. ...+..+. ...+-.|+++|..+|..|.+. |.++.+.
T Consensus 34 ~~~~v~V~VtwN~WsG~~Gd~~kly~dG~---~V~tG~~~-~~~~a~~~-~~~gG~y~~~VeLCN~~GCS~-S~~~~V~ 106 (133)
T PF08329_consen 34 RNDQVDVSVTWNVWSGTNGDTAKLYFDGV---LVWTGPSP-QQKSATFT-VTKGGRYQMQVELCNADGCST-SAPVEVV 106 (133)
T ss_dssp E-SSEEEEEEEE-SSS---SEEEEEETTE---EEEEEE---SEEEEEEE-E-S-EEEEEEEEEEETTEEEE----EEEE
T ss_pred ecCceEEEEEEEEecCCCCCEEEEEECCE---EEEeCCCc-cCceEEEE-ecCCCEEEEEEEEECCCCccc-CCCEEEE
Confidence 34556889999875 55567777766421 11111111 12223443 345668999999999999876 3344443
No 401
>PF10342 GPI-anchored: Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family; InterPro: IPR018466 This entry represents glycoproteins involved in cell wall (1-->6)-beta-glucan assembly. In yeast a null mutation leads to severe growth defects, aberrant multi-budded morphology, and mating defects [, ]. The entry includes DRMIP and Hesp-379, which are involved in both fruiting body formation and in host attack respectively. Hesp-379 is a haustorially expressed secreted protein; the haustorium being the small sucker that penetrates host tissue [].
Probab=32.09 E-value=2.7e+02 Score=22.31 Aligned_cols=59 Identities=20% Similarity=0.289 Sum_probs=36.4
Q ss_pred ceEEEEecCCCCCCCceeeEEEEEEeCCCCCCcceEEEee---c--CceEEEE-cCCCCCCeEEEEEE
Q psy8771 496 STMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVV---D--NNQLTTI-SDLTPHTIYTIRVQ 557 (904)
Q Consensus 496 ~~~~l~W~~p~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~---~--~~~~~~~-~~L~p~t~Y~~~V~ 557 (904)
..+.|+|+.... ....|.|............+..... . ....+.+ .+|.++..|.|++.
T Consensus 13 ~~~~I~W~~~~~---~~~~~~I~L~~g~~~~~~~~~~ia~~v~~~~gs~~~~~p~~l~~~~~Y~i~~~ 77 (93)
T PF10342_consen 13 QPITITWTSDGT---DPGNVTIYLCNGNNTNLNFVQTIASNVSNSDGSYTWTIPSDLPSGGDYFIQIV 77 (93)
T ss_pred CcEEEEEeCCCC---CCcEEEEEEEcCCCCCcceeEEEEecccCCCCEEEEEcCCCCCCCCcEEEEEE
Confidence 689999998532 2367788877766422222322221 1 2333444 55889899999988
No 402
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=31.98 E-value=1.7e+02 Score=23.38 Aligned_cols=22 Identities=9% Similarity=-0.049 Sum_probs=18.7
Q ss_pred ceEEEcCCCCCCeEEEEEEEEc
Q psy8771 253 TYYTVRNLSPYTEYEFYIIAVN 274 (904)
Q Consensus 253 ~~~~i~~L~p~~~Y~~~v~a~n 274 (904)
..+.|..+++.+.+.|.|.+.-
T Consensus 47 ~GLlI~~~~~~dsG~Y~C~s~E 68 (85)
T cd05872 47 DGLLILVTSPEHSGTYRCYSEE 68 (85)
T ss_pred CCCEEEECCHhhCEEEEEEEec
Confidence 3377899999999999999873
No 403
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=31.97 E-value=47 Score=27.30 Aligned_cols=26 Identities=8% Similarity=-0.046 Sum_probs=23.1
Q ss_pred eceEEEcCCCCCCeEEEEEEEEcCCC
Q psy8771 252 TTYYTVRNLSPYTEYEFYIIAVNNLG 277 (904)
Q Consensus 252 ~~~~~i~~L~p~~~Y~~~v~a~n~~g 277 (904)
..++.|.+|+..+.+.|+|.+.|..+
T Consensus 64 ~~sL~I~~v~~~D~G~Y~C~v~~~~~ 89 (100)
T cd05713 64 SVALRIHNVRASDEGLYTCFFQSDGF 89 (100)
T ss_pred cEEEEEEcCChhhCEEEEEEEecCCc
Confidence 46799999999999999999998654
No 404
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=30.72 E-value=57 Score=27.70 Aligned_cols=28 Identities=4% Similarity=0.050 Sum_probs=24.2
Q ss_pred eeceEEEcCCCCCCeEEEEEEEEcCCCC
Q psy8771 251 ITTYYTVRNLSPYTEYEFYIIAVNNLGR 278 (904)
Q Consensus 251 ~~~~~~i~~L~p~~~Y~~~v~a~n~~g~ 278 (904)
....++|.+|+..+++.|+|...++...
T Consensus 72 ~~asL~I~nl~~sDsG~Y~C~V~~g~~~ 99 (112)
T cd05900 72 SDATLEITELRSNDSGTYRCEVMHGIED 99 (112)
T ss_pred CCcEEEEeecccccCEEEEEEEecCCCC
Confidence 4588999999999999999999976543
No 405
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=29.64 E-value=2.8e+02 Score=21.83 Aligned_cols=50 Identities=14% Similarity=0.102 Sum_probs=28.7
Q ss_pred CCeEEEeeCCccccCCCCceeecceEEEEeee--cCCeEEEEEE-EecCcceEEEEEEEE
Q psy8771 134 MPFVKWRKGQNIELTPDDKLPVGRNVLTLDRV--TESENYTCIA-ASVLGVIETSTIVKV 190 (904)
Q Consensus 134 ~p~i~W~k~~~~~~~~~~~~~~~~~~l~i~~l--~d~g~Y~c~a-~n~~g~~~~~~~l~v 190 (904)
.+.+.|+.. +. +..-....+....+ +|.|..+|.| .+..-..+....|.+
T Consensus 26 ~~~~~l~~~-~~------k~~~~~~~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v 78 (80)
T PF05790_consen 26 KPSLFLENP-GK------KSLETKKLVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV 78 (80)
T ss_dssp CEEEEEECS-SC------EEEEESSEEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred Chhheeecc-Cc------cccccceEEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence 355667665 21 22223344555555 7999999999 555544555544443
No 406
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=29.46 E-value=2.4e+02 Score=22.70 Aligned_cols=60 Identities=15% Similarity=0.167 Sum_probs=37.7
Q ss_pred CCeEEEEEeCCCccceEEEEEEEeCCCCCCeEEeecceeceEEEcCCCCCCeEEEEEEEEcC
Q psy8771 214 ATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEISGIITTYYTVRNLSPYTEYEFYIIAVNN 275 (904)
Q Consensus 214 ~~sv~l~W~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~ 275 (904)
..+++|+.+.+........|+|...++. ...........+.+..|...+.+.++|....+
T Consensus 14 G~sLtLtl~~~s~s~p~~~i~w~~P~n~--~~~~~~~~~ktL~~~qv~~qdSG~WtC~V~~~ 73 (88)
T cd07694 14 GTNLTLTLHGSSNSLPAFKVEWRGPGNK--SKQILNQDKKTLNLVQLGPNDSGTWDCIVSVN 73 (88)
T ss_pred CCcEEEEEecCCCCCCCccEEEeCCCCc--cceeccCCccEEEeceeCcccCCEEEEEEEEC
Confidence 4566777776544333455666654322 11222234577899999999999999998543
No 407
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=27.88 E-value=2e+02 Score=31.99 Aligned_cols=35 Identities=34% Similarity=0.496 Sum_probs=18.7
Q ss_pred ceEEEeCCCCCcEEEEEEEEEcCCCCCCCCCCeeEEec
Q psy8771 675 ETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTK 712 (904)
Q Consensus 675 ~~~~l~~L~p~t~Y~v~V~a~~~~G~~~~s~~~~~~t~ 712 (904)
..+.+.+|+|++.|.+++..... +..+..-.++|.
T Consensus 64 ~~v~v~gL~p~t~Y~Y~~~~~~~---~~~s~~g~~rT~ 98 (453)
T PF09423_consen 64 VKVDVTGLQPGTRYYYRFVVDGG---GQTSPVGRFRTA 98 (453)
T ss_dssp EEEEE-S--TT-EEEEEEEE--T---TEE---EEEE--
T ss_pred eecccCCCCCCceEEEEEEEecC---CCCCCceEEEcC
Confidence 36889999999999999998322 334555678887
No 408
>PHA03282 envelope glycoprotein E; Provisional
Probab=27.34 E-value=1.7e+02 Score=31.35 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=22.4
Q ss_pred CCceeecceEEEEeee--cCCeEEEEEEE
Q psy8771 150 DDKLPVGRNVLTLDRV--TESENYTCIAA 176 (904)
Q Consensus 150 ~~~~~~~~~~l~i~~l--~d~g~Y~c~a~ 176 (904)
..|+...+++|.|.++ +|+|.|+..+.
T Consensus 116 ~~rvs~~n~tl~l~~a~~~DsG~Y~L~~~ 144 (540)
T PHA03282 116 PPRVAVVNGTLVLREARETDSGMYVLSVS 144 (540)
T ss_pred CcceeEecceEEEeeccccCCceEEEEec
Confidence 4567777888999998 79999999864
No 409
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=26.96 E-value=72 Score=35.41 Aligned_cols=37 Identities=32% Similarity=0.467 Sum_probs=20.2
Q ss_pred CeeEEEEcCCCCCcEEEEEEEEEecCCCCCCCCceEEecC
Q psy8771 854 GALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKTP 893 (904)
Q Consensus 854 ~~~~~~i~~L~p~t~Y~~~v~a~n~~G~g~~s~~~~~~t~ 893 (904)
-...+.+++|+|++.|.+++..- +.+..|..-.|+|.
T Consensus 62 ~t~~v~v~gL~p~t~Y~Y~~~~~---~~~~~s~~g~~rT~ 98 (453)
T PF09423_consen 62 FTVKVDVTGLQPGTRYYYRFVVD---GGGQTSPVGRFRTA 98 (453)
T ss_dssp TEEEEEE-S--TT-EEEEEEEE-----TTEE---EEEE--
T ss_pred eEeecccCCCCCCceEEEEEEEe---cCCCCCCceEEEcC
Confidence 34578999999999999999992 22345666678886
No 410
>PF00801 PKD: PKD domain; InterPro: IPR000601 The PKD (Polycystic Kidney Disease) domain was first identified in the Polycystic Kidney Disease protein, polycystin-1 (PDK1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands []. Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein-protein and protein-carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions. PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal surface layer proteins that protect the cell from extreme environments [], and in the human VPS10 domain-containing receptor SorCS2 [].; PDB: 1B4R_A 2KZW_A 2C4X_A 2C26_A 2Y72_B 3JQU_A 3JS7_B 1WGO_A 1L0Q_A.
Probab=25.62 E-value=1.9e+02 Score=21.65 Aligned_cols=59 Identities=14% Similarity=0.240 Sum_probs=33.2
Q ss_pred eEEecCCCeEEEEEEccCCCCeEEEeeCCccccCCCCceeecceEEEEeee-cCCeEEEE--EEEecCcce
Q psy8771 115 LEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRNVLTLDRV-TESENYTC--IAASVLGVI 182 (904)
Q Consensus 115 ~~~~~g~~~~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~l~i~~l-~d~g~Y~c--~a~n~~g~~ 182 (904)
..+..|+.++|...........+.|..++..... ... .+... ...|.|.+ .+.|..|..
T Consensus 6 ~~~~~g~~v~f~~~~~~g~~~~y~W~fgd~~~~~-------~~~--~~t~ty~~~G~y~V~ltv~n~~g~~ 67 (69)
T PF00801_consen 6 TYVPTGQPVTFTASSSDGSPVTYSWDFGDNGTVS-------TGS--SVTHTYSSPGTYTVTLTVTNGVGSA 67 (69)
T ss_dssp SCEBTTSEEEEEETTTTSSECEEEEE-SSESEEE-------CSS--EEEEEESSSEEEEEEEEEEETTSEE
T ss_pred CEEcCCCEEEEEEEccCCCCeEEEEEECCCCccc-------cCC--CEEEEcCCCeEEEEEEEEEECCCCc
Confidence 4456788899988883333456889998301111 111 12222 56899986 456665543
No 411
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=24.03 E-value=86 Score=25.67 Aligned_cols=28 Identities=11% Similarity=-0.057 Sum_probs=24.2
Q ss_pred eeceEEEcCCCCCCeEEEEEEEEcCCCC
Q psy8771 251 ITTYYTVRNLSPYTEYEFYIIAVNNLGR 278 (904)
Q Consensus 251 ~~~~~~i~~L~p~~~Y~~~v~a~n~~g~ 278 (904)
...+++|.+|+..+++.|.|...+..|.
T Consensus 59 ~~~sL~I~~~~~~DsG~Y~c~v~~~~~~ 86 (97)
T cd05775 59 NDYSLQISNLKMEDAGSYRAEINTKNGV 86 (97)
T ss_pred CceeEEECCCchHHCEEEEEEEEcCCCC
Confidence 3478999999999999999999887653
No 412
>cd02848 Chitinase_N_term Chitinase N-terminus domain. Chitinases hydrolyze the abundant natural biopolymer chitin, producing smaller chito-oligosaccharides. Chitin consists of multiple N-acetyl-D-glucosamine (NAG) residues connected via beta-1,4-glycosidic linkages and is an important structural element of fungal cell wall and arthropod exoskeletons. On the basis of the mode of chitin hydrolysis, chitinases are classified as random, endo-, and exo-chitinases and based on sequence criteria, chitinases belong to families 18 and 19 of glycosyl hydrolases. The N-terminus of chitinase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitob
Probab=23.65 E-value=4.4e+02 Score=22.08 Aligned_cols=27 Identities=26% Similarity=0.294 Sum_probs=21.1
Q ss_pred CCCCcEEEEEEEEEecCCCCCCCCceEE
Q psy8771 863 LQPDTIYTIQVAALTRKGDGDRSKPETI 890 (904)
Q Consensus 863 L~p~t~Y~~~v~a~n~~G~g~~s~~~~~ 890 (904)
...|-.|..+|.++|..|.+ .|.++.+
T Consensus 76 v~kgG~y~m~V~lCn~dGCS-~S~~~~I 102 (106)
T cd02848 76 VGKGGRYQMQVALCNGDGCS-TSAAKEI 102 (106)
T ss_pred eCCCCeEEEEEEEECCCCcc-CcCCEEE
Confidence 46688999999999999976 5556543
No 413
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=23.24 E-value=87 Score=26.82 Aligned_cols=28 Identities=7% Similarity=0.036 Sum_probs=24.1
Q ss_pred eceEEEcCCCCCCeEEEEEEEEcCCCCC
Q psy8771 252 TTYYTVRNLSPYTEYEFYIIAVNNLGRG 279 (904)
Q Consensus 252 ~~~~~i~~L~p~~~Y~~~v~a~n~~g~s 279 (904)
+.++.|.+|+..+.+.|+|...++....
T Consensus 78 ~asL~i~~v~~sD~G~Y~C~V~~g~~~~ 105 (117)
T cd05901 78 DASLTIVKLRASDAGVYRCEVMHGIEDT 105 (117)
T ss_pred ceEEEEcccccccCEEEEEEEEECCccc
Confidence 4779999999999999999998876544
No 414
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=23.17 E-value=4.7e+02 Score=22.25 Aligned_cols=26 Identities=4% Similarity=0.046 Sum_probs=21.7
Q ss_pred ceeceEEEcCCCCCCeEEEEEEEEcC
Q psy8771 250 IITTYYTVRNLSPYTEYEFYIIAVNN 275 (904)
Q Consensus 250 ~~~~~~~i~~L~p~~~Y~~~v~a~n~ 275 (904)
.....|.|.+|++.++..|.|+....
T Consensus 77 ~~~~sL~I~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 77 KKNCSLLISDAQPEDSGKYFFRVELG 102 (119)
T ss_pred CCEEEEEEccCChhhCeEEEEEEEcC
Confidence 34467999999999999999987663
No 415
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=22.59 E-value=4e+02 Score=21.96 Aligned_cols=25 Identities=12% Similarity=0.179 Sum_probs=21.3
Q ss_pred eeceEEEcCCCCCCeEEEEEEEEcC
Q psy8771 251 ITTYYTVRNLSPYTEYEFYIIAVNN 275 (904)
Q Consensus 251 ~~~~~~i~~L~p~~~Y~~~v~a~n~ 275 (904)
....++|.++++.+.+.|.|.+.+.
T Consensus 69 ~~~~L~I~~~~~~Dsg~Y~Ca~~~~ 93 (106)
T cd04980 69 TDFTLTISRVEPEDAAVYYCQQYGT 93 (106)
T ss_pred CEEEEEECCCChHHCEEEEEEEeCC
Confidence 4467999999999999999998653
No 416
>PF12245 Big_3_2: Bacterial Ig-like domain (group 3); InterPro: IPR022038 This family of proteins is found in bacteria. They have two conserved sequence motifs: AGN and GMT.
Probab=22.48 E-value=1.5e+02 Score=21.68 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=17.2
Q ss_pred cEEEEEEEEEecCCCCCCCCceE
Q psy8771 867 TIYTIQVAALTRKGDGDRSKPET 889 (904)
Q Consensus 867 t~Y~~~v~a~n~~G~g~~s~~~~ 889 (904)
..|.+++++.+.+|....+....
T Consensus 23 g~yt~~v~a~D~AGN~~~~~~~~ 45 (60)
T PF12245_consen 23 GEYTLTVTATDKAGNTSSSTTQI 45 (60)
T ss_pred ccEEEEEEEEECCCCEEEeeeEE
Confidence 38999999999999754444433
No 417
>COG3979 Uncharacterized protein contain chitin-binding domain type 3 [General function prediction only]
Probab=20.78 E-value=1.9e+02 Score=27.12 Aligned_cols=87 Identities=20% Similarity=0.286 Sum_probs=55.3
Q ss_pred CCCCCcceEEEeeccceEEEeccCCCCCCCceeeEEEEEEeCCccccceEEecccceEEEeCCCCCcEEEEEEEEEcCCC
Q psy8771 620 TYAKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRG 699 (904)
Q Consensus 620 ~~~~p~~l~~~~~~~~~~~l~w~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~v~V~a~~~~G 699 (904)
.+..+..+...+....++.+.|.... .......|. +.... ............++.+|.+.+.|.+.+.+....|
T Consensus 4 ~~~a~~~~~~~~~~~~s~~~~~~s~~-~~~~~~~~p--~~~~~---d~~~~~t~~~~~~~~g~~~et~y~~~~~a~~t~g 77 (181)
T COG3979 4 APPAPKSLMLTNVTTTSASLAASSSS-DNKASDTYP--YVYAW---DPKTVYTTGTVVTVEGLAPETEYWTLVEAPDTSG 77 (181)
T ss_pred cCcCccceeecchhhhhhhhcccccc-ccccccCCC--ccccc---CccceecccceEEecCcceeeEEEEeeeccCCCC
Confidence 34567778888888999999998752 233444454 11110 0122333456889999999999999999999766
Q ss_pred C-CCCCCCeeEEec
Q psy8771 700 E-GATTPPIPVRTK 712 (904)
Q Consensus 700 ~-~~~s~~~~~~t~ 712 (904)
. +.++..+.+.+.
T Consensus 78 ~~s~~~~~~~~~~~ 91 (181)
T COG3979 78 NWSAWSRLLTVSTS 91 (181)
T ss_pred ccccceeeeeeccC
Confidence 4 334433444443
No 418
>PHA03240 envelope glycoprotein M; Provisional
Probab=20.04 E-value=2.1e+02 Score=27.00 Aligned_cols=67 Identities=15% Similarity=0.153 Sum_probs=41.7
Q ss_pred eEEecCCCeEEEEEEccCCCCeEEEee-------CCcccc-------C-C------------CCce--eecceEEEEeee
Q psy8771 115 LEVMLDSPLNLSCVAVGSPMPFVKWRK-------GQNIEL-------T-P------------DDKL--PVGRNVLTLDRV 165 (904)
Q Consensus 115 ~~~~~g~~~~l~C~~~g~p~p~i~W~k-------~~~~~~-------~-~------------~~~~--~~~~~~l~i~~l 165 (904)
+++.+|++++|.-.-.-.|.-.+.|++ +.|... + . +.++ .-.+.+|.|-+|
T Consensus 33 vt~r~G~nVTLga~~~lhpgq~v~Wy~~~c~~~~G~G~~~~plC~Ytppk~~r~ktl~~t~~nt~i~y~C~NstL~i~~v 112 (258)
T PHA03240 33 HTTREGDPLLLGGGHGLGAGQKAHWYKHKCDGITGNGDKLHPICTYDPPKNGKGKTLDESAENSFILYECHNSTLIIAHL 112 (258)
T ss_pred cccccCCceeeCCcccCCCCCEEEEEeeecccccCCCCCCceeEEecCCccccccccccccCCCceEEEeccceEEEEEE
Confidence 777889999887665555667899998 322211 0 0 1111 124567888777
Q ss_pred --cCCeEEEEEEEecCcc
Q psy8771 166 --TESENYTCIAASVLGV 181 (904)
Q Consensus 166 --~d~g~Y~c~a~n~~g~ 181 (904)
+|.|+|...--...|.
T Consensus 113 n~sd~~nYcr~k~~~~g~ 130 (258)
T PHA03240 113 NLSDAGEYCRKKCPPKGD 130 (258)
T ss_pred eecCcchhhhccCCCCCC
Confidence 7999997655544554
Done!