RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8771
(904 letters)
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 233 bits (596), Expect = 7e-67
Identities = 99/733 (13%), Positives = 190/733 (25%), Gaps = 167/733 (22%)
Query: 98 DPVRRVPPQFSIPPPALLEVMLDSPLNLSCV-------AVGSPMPFVKWRKGQNIELTPD 150
DP + P+ + V L S CV ++ W+ + + +
Sbjct: 3 DPCGYISPESPV-------VQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTN-HFTIPKE 54
Query: 151 DKLPVGRNVLTL---DRVTESENYTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDV 207
+ R ++ D + + TC + + + + + P P ++
Sbjct: 55 QYTIINRTASSVTFTDIASLNIQLTCNILTFGQLEQNVYGITIISGLPP-----EKPKNL 109
Query: 208 KISEVTATSVRLDWTYPSETLL--YYVIQYK-PKAANTPYSEISGIITTYYTVRNLSPYT 264
+R +W ET L + ++ + T+ + +
Sbjct: 110 SCIVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFV 169
Query: 265 EYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQ 324
E ++ A N LG+ +V+P P +
Sbjct: 170 NIEVWVEAENALGKVTSD-----------HINFDPVYKVKPNP----------PHNLSVI 208
Query: 325 ITAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYGKTPGFGE 384
+ + + L T Y I QY
Sbjct: 209 NSEELSSILKLTWTNPSIKSVIILKYNI----------------------QYRTKDASTW 246
Query: 385 QAAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYGKTPGFGE 444
++++ L P T Y + G+G +
Sbjct: 247 SQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDW---------------- 290
Query: 445 QALYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTA----PRDVQVRPLSSSTMVI 500
+ T + P A + T+ +
Sbjct: 291 ------------------------SEEASGITYEDRPSKAPSFWYKIDPSHTQGYRTVQL 326
Query: 501 QWDE--PETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLTTISDLTPHTIYTIRVQA 558
W P NG+I Y+V T+ +S + V+ +LT + Y +
Sbjct: 327 VWKTLPPFEANGKILDYEVTLTRWKS----HLQNYTVNATKLTV---NLTNDRYLATLTV 379
Query: 559 FTSVGPGPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWN 618
VG +A + + + P ++ + + W+ P S + Y L W
Sbjct: 380 RNLVGKSD-AAVLTIPACDFQATHPVMDLKAFPKDNMLWVEWTTPRESVKK---YILEW- 434
Query: 619 DTYAKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVETYS 678
L + TY
Sbjct: 435 -----------------------------------CVLSDKAPCITDWQQEDGTVHRTYL 459
Query: 679 LTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWE 738
L + Y I + G G+ I KQ P P V + + + W+
Sbjct: 460 RGNLAESKCYLITVTPVYADGPGSP-ESIKAYLKQAPPSKGP-TVRTKKVGKNEAVLEWD 517
Query: 739 PPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSI 798
PV+ NG I Y + + +++ ++ + + T + L L T Y + + A T
Sbjct: 518 QLPVDVQNGFIRNYTIFYRTIIGNETAVNVDS--SHTEYTLSSLTSDTLYMVRMAAYTDE 575
Query: 799 GDGPSSYPITIRT 811
G T T
Sbjct: 576 GGKDGPE-FTFTT 587
Score = 180 bits (459), Expect = 2e-48
Identities = 74/469 (15%), Positives = 140/469 (29%), Gaps = 67/469 (14%)
Query: 447 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLS--SSTMVIQWDE 504
+W+ A++ G+ T+ I P ++ V SS + + W
Sbjct: 165 TVYFVNIEVWVEAENALGKV-TSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTN 223
Query: 505 PETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLT-TISDLTPHTIYTIRVQAFTSVG 563
P + I Y + Y + S + + + + T+ DL P T Y R++ G
Sbjct: 224 PSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDG 283
Query: 564 PGPLS---APVLVKTQQGVPSQPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDT 620
G S T + PS+ + + + +L W
Sbjct: 284 KGYWSDWSEEASGITYEDRPSKAPSFW------------YKIDPSHTQGYRTVQLVWK-- 329
Query: 621 YAKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVETYSLT 680
P + I+ YE+ + K H + V LT
Sbjct: 330 --------------------TLPPFEANGKILDYEVTLT----RWKSHLQNYTVNATKLT 365
Query: 681 GLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPP 740
N Y L ++ G+ + + + P ++ P + + W P
Sbjct: 366 VNLTNDRYLATLTVRNLVGKSDAAV-LTIPACDFQATHPVMDLKAFP-KDNMLWVEWTTP 423
Query: 741 PVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSIGD 800
E +I+ + + + ++ +++ L + Y I V + G
Sbjct: 424 R-ESVKKYILEWCVLS-DKAPCITDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYADGP 481
Query: 801 GPSSYPITIRTHEDDPS-----EVCPTQNDF-----RKNKKTNGSNFKGGY------LND 844
G I + PS + + + F Y +
Sbjct: 482 GSPE-SIKAYLKQAPPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIG 540
Query: 845 PMRFDVSDGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKTP 893
D E ++ L DT+Y +++AA T +G D + T TP
Sbjct: 541 NETAVNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEGGKDGPE-FTFTTP 588
Score = 160 bits (405), Expect = 2e-41
Identities = 49/476 (10%), Positives = 116/476 (24%), Gaps = 74/476 (15%)
Query: 449 PNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETP 508
N + + I P P+++ M +W +
Sbjct: 74 LNIQLTCNILTFGQLEQNVYGITIIS---GLPPE-KPKNLSCIVNEGKKMRCEW-DGGRE 128
Query: 509 NGQITGYKVYYTQDQSLPMSAWETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVGPGPLS 568
T + + + + + + + T + V+A ++G
Sbjct: 129 THLETNFTLKS-EWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSD 187
Query: 569 APVLVKTQQGVPSQPRDLRAVDI--QETAVTLAWSKPTHSGENIISYELYWNDTYAKPRD 626
+ P+ P +L ++ + + L W+ P+ I+ Y +
Sbjct: 188 HINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQ---------- 237
Query: 627 LRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVETYSLTGLYPNT 686
Y T+++ ++++ L P T
Sbjct: 238 ---------------------------YRTKDASTWSQIPPEDTASTRSSFTVQDLKPFT 270
Query: 687 LYYIWLAAQSPRGEGA---TTPPIPVRTKQYVPGAPPQNV----SCEPLSSTSIRISWEP 739
Y + G+G + T + P P ++++ W+
Sbjct: 271 EYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKAPSFWYKIDPSHTQGYRTVQLVWKT 330
Query: 740 PPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSIG 799
P +NG I+ Y++ ++ N T + Y + +G
Sbjct: 331 LPPFEANGKILDYEVTLTRWKSHLQNYTV----NATKLTV--NLTNDRYLATLTVRNLVG 384
Query: 800 DGPSSYPITIRTHEDDPSEVCPTQNDFRKNK--------KTNGSNFKGGYLNDPMRFD-- 849
++ V + + N + + + + +
Sbjct: 385 KSDAAVLTIPACDFQATHPVMDLKAFPKDNMLWVEWTTPRESVKKYILEWCVLSDKAPCI 444
Query: 850 -----VSDGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKTPGGVPNRP 900
L Y I V + G G + P++
Sbjct: 445 TDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYADGPG-SPESIKAYLKQAPPSKG 499
Score = 132 bits (334), Expect = 2e-32
Identities = 61/445 (13%), Positives = 122/445 (27%), Gaps = 72/445 (16%)
Query: 485 PRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQD-QSLPMSAWETQVVDNNQLTTI 543
P V+ S+ T V E + + + + ++P + + +T
Sbjct: 10 PESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFT 69
Query: 544 SDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLAWSKP 603
+ + T + F + ++ P +P++L + + + W
Sbjct: 70 DIASLNIQLTCNILTFGQLEQNVYGITIIS---GLPPEKPKNLSCIVNEGKKMRCEWDGG 126
Query: 604 THSGENIISYELYWNDTYAKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYA 663
+ ++ L W
Sbjct: 127 RETHL-ETNFTLKSE---------------------------------------WATHKF 146
Query: 664 KAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQNV 723
+R +W+ A++ G+ T+ I V PP N+
Sbjct: 147 ADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKV-TSDHINFDPVYKVKPNPPHNL 205
Query: 724 SCEPLS--STSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSE--ASIVTLKNQTSFVL 779
S S+ ++++W P + I+ Y +Q+ S T ++SF +
Sbjct: 206 SVINSEELSSILKLTWTNP--SIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTV 263
Query: 780 DELKKWTEYRIWVLAGTSIGDGPSSYP---ITIRTHEDDPSEVCPTQNDFRKNKKTNGSN 836
+LK +TEY + G G S + T+ED PS+ +
Sbjct: 264 QDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKAPSFWYKIDPSHTQGYRT 323
Query: 837 FK------------GGYLNDPMRFDVSDGGALELNV-----TGLQPDTIYTIQVAALTRK 879
+ G L+ + V T + Y +
Sbjct: 324 VQLVWKTLPPFEANGKILDYEVTLTRWKSHLQNYTVNATKLTVNLTNDRYLATLTVRNLV 383
Query: 880 GDGDRSKPETIKTPGGVPNRPHVNL 904
G D + TI P ++L
Sbjct: 384 GKSDAA-VLTIPACDFQATHPVMDL 407
Score = 104 bits (261), Expect = 2e-23
Identities = 35/192 (18%), Positives = 66/192 (34%), Gaps = 20/192 (10%)
Query: 201 PVAPLDVKISEVTATSVRLDWTYPSETLLYYVIQYKPKAANTPYS----EISGIITTYYT 256
P+ + + ++WT P E++ Y++++ + P + G + Y
Sbjct: 400 ATHPVMDLKAFPKDNMLWVEWTTPRESVKKYILEWCVLSDKAPCITDWQQEDGTVHRTYL 459
Query: 257 VRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWD 316
NL+ Y + V G G P S + P V+ + + + V++WD
Sbjct: 460 RGNLAESKCYLITVTPVYADGPGSPESIKA-YLKQAPPS-KGPTVRTKKVGKNEAVLEWD 517
Query: 317 EP--ETPNGQIT------------AKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGE 362
+ + NG I Y+L+ L +TLY + +AA + G
Sbjct: 518 QLPVDVQNGFIRNYTIFYRTIIGNETAVNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEGG 577
Query: 363 GATTPPIPVRTK 374
K
Sbjct: 578 KDGPEFTFTTPK 589
Score = 82.4 bits (203), Expect = 2e-16
Identities = 68/516 (13%), Positives = 114/516 (22%), Gaps = 132/516 (25%)
Query: 28 ILVTEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQI----------------------- 64
I+ P P+++ M +WD + +
Sbjct: 97 IISGLPPEKPKNLSCIVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTP 156
Query: 65 -----THPPTRAARSHARLAAQSVLRRGRLAHAVRQVADPVRRVPPQFSIPPPALLEVML 119
+ + A++ L + + DPV +V P PP L V
Sbjct: 157 TSCTVDYSTVYFVNIEVWVEAENALGKVT---SDHINFDPVYKVKPN----PPHNLSV-- 207
Query: 120 DSPLNLSCVAVGSPMPFVKWRKGQ---------NIELTPDDK----------LPVGRNVL 160
S + + W NI+ D R+
Sbjct: 208 ------INSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSF 261
Query: 161 TLDRVTESENYTC--IAASVLGVIETS-----TIVKVQCKYAPLLTLPVAPLDVKISEVT 213
T+ + Y G S P
Sbjct: 262 TVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYED-RPSKAPSFWYKIDPSHTQG 320
Query: 214 ATSVRLDWTYPSET-----LLYYVIQYKPKAANTPYSEISGIITTYYTVRNLSPYTEYEF 268
+V+L W +L Y + S + + Y
Sbjct: 321 YRTVQLVWKTLPPFEANGKILDYEVTLTRWK-----SHLQNYTVNATKLTVNLTNDRYLA 375
Query: 269 YIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEPETPNG----- 323
+ N +G+ + + T P + + ++W P
Sbjct: 376 TLTVRNLVGKSDAAV--LTIPACDFQATHPVMDLKAFPKDNMLWVEWTTPRESVKKYILE 433
Query: 324 ---------QITAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEG----------- 363
IT + TY L + Y I + G G
Sbjct: 434 WCVLSDKAPCITDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSPESIKAYLKQ 493
Query: 364 -ATTPPIPVRTKQYGKT--------------PGF----------GEQAAKHHRRIGLVET 398
+ VRTK+ GK GF
Sbjct: 494 APPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGNETAVNVDSSHTE 553
Query: 399 YSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTK 434
Y+L+ L +TLY + +AA + G K
Sbjct: 554 YTLSSLTSDTLYMVRMAAYTDEGGKDGPEFTFTTPK 589
>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III
domain, oncofetal splice VARI extra-domain B, EIIIB,
ED-B, angiogenesis, integrin; 2.40A {Homo sapiens}
Length = 375
Score = 210 bits (535), Expect = 1e-60
Identities = 80/434 (18%), Positives = 143/434 (32%), Gaps = 73/434 (16%)
Query: 481 PGTAPRDVQVRPLSSSTMV-IQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQ 539
P + P ++ + + ++ + W+ TP+ ITGY++ T ++ E V +
Sbjct: 2 PLSPPTNLHLEANPDTGVLTVSWERSTTPD--ITGYRITTTPTNGQQGNSLEEVVHADQS 59
Query: 540 LTTISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLA 599
T +L+P Y + V V S P+ VP Q DL VDI ++++ L
Sbjct: 60 SCTFDNLSPGLEYNVSVYT---VKDDKESVPISDTIIPEVP-QLTDLSFVDITDSSIGLR 115
Query: 600 WSKPTHSGENIISYELYWNDTYAKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWN 659
W+ S II Y + G I + +
Sbjct: 116 WTPLNSS--TIIGYRITV-------------------------VAAGEGIPIFEDFVDSS 148
Query: 660 DTYAKAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAP 719
Y++TGL P Y I + GE A P Q P
Sbjct: 149 VG--------------YYTVTGLEPGIDYDISVITLINGGESA-----PTTLTQQTAVPP 189
Query: 720 PQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFVL 779
P ++ + ++R++W PPP + + + +++ + A + + + VL
Sbjct: 190 PTDLRFTNIGPDTMRVTWAPPP----SIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVL 245
Query: 780 DELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDPSEVCPTQNDFRKN------KKTN 833
L TEY + V + + + S P+ R S +D N
Sbjct: 246 TNLLPGTEYVVSVSS---VYEQHESTPLRGRQKTGLDSPTGIDFSDITANSFTVHWIAPR 302
Query: 834 GS------NFKGGYLNDPMRFDVSDGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKP 887
+ + + R D + +T L P T Y + + AL + +
Sbjct: 303 ATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLL-I 361
Query: 888 ETIKTPGGVPNRPH 901
T + H
Sbjct: 362 GQQSTVSAHHHHHH 375
Score = 184 bits (468), Expect = 2e-51
Identities = 60/359 (16%), Positives = 115/359 (32%), Gaps = 63/359 (17%)
Query: 447 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPE 506
L P Y + + E PI P D+ ++ S++ ++W
Sbjct: 66 LSPGLEYNVSVYTVKDDKES---VPISDTIIPEVP--QLTDLSFVDITDSSIGLRWTPL- 119
Query: 507 TPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVGPGP 566
+ I GY++ + +E V + T++ L P Y I V + G
Sbjct: 120 -NSSTIIGYRITVVAAGE-GIPIFEDFVDSSVGYYTVTGLEPGIDYDISVITLINGGESA 177
Query: 567 LSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKPRD 626
+ TQQ P DLR +I + + W+ P ++ ++ + +
Sbjct: 178 PTTL----TQQTAVPPPTDLRFTNIGPDTMRVTWAPPP--SIDLTNFLVRY--------- 222
Query: 627 LRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVETYSLTGLYPNT 686
P + E++ + +D LT L P T
Sbjct: 223 ----------------SPVKNEEDVAELSISPSDN--------------AVVLTNLLPGT 252
Query: 687 LYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSN 746
Y + +++ + E P+R +Q P + +++ S + W P
Sbjct: 253 EYVVSVSSVYEQHEST-----PLRGRQKTGLDSPTGIDFSDITANSFTVHWIAP-----R 302
Query: 747 GHIVYYKLQFVETGRSDSEASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSY 805
I Y+++ S ++ S L L TEY + ++A + P
Sbjct: 303 ATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLLI 361
Score = 167 bits (424), Expect = 1e-45
Identities = 81/524 (15%), Positives = 136/524 (25%), Gaps = 158/524 (30%)
Query: 203 APLDVKISEVTATS-VRLDWTYPSE-TLLYYVIQYKPKAANT--PYSEISGIITTYYTVR 258
P ++ + T + + W + + Y I P E+ + T
Sbjct: 5 PPTNLHLEANPDTGVLTVSWERSTTPDITGYRITTTPTNGQQGNSLEEVVHADQSSCTFD 64
Query: 259 NLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEP 318
NLSP EY + V + S P T P D+ ++ S++ ++W
Sbjct: 65 NLSPGLEYNVSVYTVKD---DKESVPISDTIIPEVP--QLTDLSFVDITDSSIGLRWTPL 119
Query: 319 ETPNGQITAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYGK 378
+ I Y I + GEG V +
Sbjct: 120 --NSSTIIG----------------------YRITV---VAAGEGIPIFEDFVDSSVG-- 150
Query: 379 TPGFGEQAAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYGK 438
Y++TGL P Y I + GE A
Sbjct: 151 -------------------YYTVTGLEPGIDYDISVITLINGGESA-------------- 177
Query: 439 TPGFGEQALYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTM 498
P Q P D++ + TM
Sbjct: 178 ----------------------------------PTTLTQQTAVPPPTDLRFTNIGPDTM 203
Query: 499 VIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLTTISDLTPHTIYTIRVQA 558
+ W P P+ +T + V Y+ ++ A + +N +++L P T Y + V +
Sbjct: 204 RVTWAPP--PSIDLTNFLVRYSPVKNEEDVAELSISPSDNA-VVLTNLLPGTEYVVSVSS 260
Query: 559 FTSVGPGPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWN 618
KT P + DI + T+ W P I Y +
Sbjct: 261 VYEQHEST-PLRGRQKT---GLDSPTGIDFSDITANSFTVHWIAPRA---TITGYRIRH- 312
Query: 619 DTYAKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVETYS 678
P H + + + +
Sbjct: 313 ------------------------HPEHFSGRPREDRVPHSRN--------------SIT 334
Query: 679 LTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQN 722
LT L P T Y + + A + R E P + + V +
Sbjct: 335 LTNLTPGTEYVVSIVALNGREES---PLLIGQQST-VSAHHHHH 374
Score = 142 bits (360), Expect = 5e-37
Identities = 62/373 (16%), Positives = 112/373 (30%), Gaps = 107/373 (28%)
Query: 198 LTLPVAPLDVKISEVTATSVRLDWTYP-SETLLYYVIQYKPKAANTPYSEIS-GIITTYY 255
+ D+ ++T +S+ L WT S T++ Y I P E YY
Sbjct: 93 IPEVPQLTDLSFVDITDSSIGLRWTPLNSSTIIGYRITVVAAGEGIPIFEDFVDSSVGYY 152
Query: 256 TVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQW 315
TV L P +Y+ +I + N G P++ T P D++ + TM + W
Sbjct: 153 TVTGLEPGIDYDISVITLINGGESAPTTLTQQT-----AVPPPTDLRFTNIGPDTMRVTW 207
Query: 316 DEPETPNGQITAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQ 375
P P+ +T + + SP + +
Sbjct: 208 APP--PSIDLTN----------------------FLVRY---SPVKNEEDVAELSISPSD 240
Query: 376 YGKTPGFGEQAAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQ 435
LT L P T Y + +++ + E
Sbjct: 241 ---------------------NAVVLTNLLPGTEYVVSVSSVYEQHEST----------- 268
Query: 436 YGKTPGFGEQALYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLSS 495
P+R +Q +P + +++
Sbjct: 269 -------------------------------------PLRGRQKTGLDSPTGIDFSDITA 291
Query: 496 STMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLTTISDLTPHTIYTIR 555
++ + W P ITGY++ + + E +V + T+++LTP T Y +
Sbjct: 292 NSFTVHWIA---PRATITGYRIRH-HPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVS 347
Query: 556 VQAFTSVGPGPLS 568
+ A PL
Sbjct: 348 IVALNGREESPLL 360
Score = 110 bits (277), Expect = 3e-26
Identities = 59/387 (15%), Positives = 124/387 (32%), Gaps = 66/387 (17%)
Query: 33 PGTAPRDVQVRPLSSSTMV-IQWDEPETPN------------GQITHPPTRAARSHARLA 79
P + P ++ + + ++ + W+ TP+ GQ + +
Sbjct: 2 PLSPPTNLHLEANPDTGVLTVSWERSTTPDITGYRITTTPTNGQQGNSLEEVVHADQSSC 61
Query: 80 AQSVLRRGRLAH-AVRQVADPVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVK 138
L G + +V V D VP +I P +LS V + ++
Sbjct: 62 TFDNLSPGLEYNVSVYTVKDDKESVPISDTIIPEV------PQLTDLSFVDITDSSIGLR 115
Query: 139 WRKGQN-------IELTPDDK--------LPVGRNVLTLDRVTESENYTCIAASVLGVIE 183
W + I + + + T+ + +Y +++ E
Sbjct: 116 WTPLNSSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVITLINGGE 175
Query: 184 TSTIVKVQCKYAPLLTLPVAPLDVKISEVTATSVRLDWTYPSET-LLYYVIQYKPKAANT 242
++ Q T P D++ + + ++R+ W P L ++++Y P
Sbjct: 176 SAPTTLTQQ------TAVPPPTDLRFTNIGPDTMRVTWAPPPSIDLTNFLVRYSPVKNEE 229
Query: 243 PYSEISGIIT-TYYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDV 301
+E+S + + NL P TEY + +V P +T +P +
Sbjct: 230 DVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLR----GRQKTGLD-SPTGI 284
Query: 302 QVRPLSSSTMVIQWDEPETP-----------NGQITAKHHRRIGLVETYSLTGLYPNTLY 350
+++++ + W P + + R + +LT L P T Y
Sbjct: 285 DFSDITANSFTVHWIAPRATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEY 344
Query: 351 YIWLAAQSPRGEG-------ATTPPIP 370
+ + A + R E +T
Sbjct: 345 VVSIVALNGREESPLLIGQQSTVSAHH 371
Score = 92.2 bits (229), Expect = 5e-20
Identities = 44/202 (21%), Positives = 66/202 (32%), Gaps = 28/202 (13%)
Query: 715 VPGAPPQNVSCEPLSSTS-IRISWEPPPVERSNGHIVYYKLQFVET-GRSDSEASIVTLK 772
+P +PP N+ E T + +SWE I Y++ T G+ + V
Sbjct: 1 MPLSPPTNLHLEANPDTGVLTVSWERST----TPDITGYRITTTPTNGQQGNSLEEVVHA 56
Query: 773 NQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDPSEVCPTQNDFRKNKKT 832
+Q+S D L EY + V + D S PI+ + P T F +
Sbjct: 57 DQSSCTFDNLSPGLEYNVSVYT---VKDDKESVPISDTIIPEVPQ---LTDLSFVDITDS 110
Query: 833 ---------NGSNFKGGYL-------NDPMRFDVSDGGALELNVTGLQPDTIYTIQVAAL 876
N S G + P+ D D VTGL+P Y I V L
Sbjct: 111 SIGLRWTPLNSSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVITL 170
Query: 877 TRKGDGDRSKPETIKTPGGVPN 898
G+ + +
Sbjct: 171 INGGESAPTTLTQQTAVPPPTD 192
Score = 84.5 bits (209), Expect = 2e-17
Identities = 50/301 (16%), Positives = 88/301 (29%), Gaps = 54/301 (17%)
Query: 25 PGYILVTEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITH-------------PPTRA 71
P + D+ ++ S++ ++W + I
Sbjct: 87 PISDTIIPEVPQLTDLSFVDITDSSIGLRWTPL--NSSTIIGYRITVVAAGEGIPIFEDF 144
Query: 72 ARSHARLAAQSVLRRGRL------AHAVRQVADPVRRVPPQFSIPPPALLEVMLDSPLNL 125
S + L G + P P P +L
Sbjct: 145 VDSSVGYYTVTGLEPGIDYDISVITLINGGESAPT---TLTQQTAVPP--------PTDL 193
Query: 126 SCVAVGS--------PMP-------FVKWRKGQNIELTPDDKLPVGRNVLTLDRVTESEN 170
+G P P V++ +N E + + N + L +
Sbjct: 194 RFTNIGPDTMRVTWAPPPSIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTE 253
Query: 171 YTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISEVTATSVRLDWTYPSETLLY 230
Y +SV E++ + Q T +P + S++TA S + W P T+
Sbjct: 254 YVVSVSSVYEQHESTPLRGRQK------TGLDSPTGIDFSDITANSFTVHWIAPRATITG 307
Query: 231 YVIQYKPKAANTPYSEIS-GIITTYYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITT 289
Y I++ P+ + E T+ NL+P TEY I+A+N P T
Sbjct: 308 YRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLLIGQQSTV 367
Query: 290 G 290
Sbjct: 368 S 368
Score = 35.9 bits (83), Expect = 0.050
Identities = 10/56 (17%), Positives = 16/56 (28%), Gaps = 3/56 (5%)
Query: 849 DVSDGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKTPGGVPNRPHVNL 904
+V L P Y + V + D S P + VP ++
Sbjct: 52 EVVHADQSSCTFDNLSPGLEYNVSVYTV---KDDKESVPISDTIIPEVPQLTDLSF 104
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 218 bits (555), Expect = 3e-60
Identities = 81/463 (17%), Positives = 147/463 (31%), Gaps = 85/463 (18%)
Query: 447 LYPNTLYYIWLAAQSP--RGEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDE 504
L P+T Y I + P G G+ P + RTK +P PR ++V + S + I+W+
Sbjct: 323 LDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSRQITIRWEP 382
Query: 505 PETP--NGQITGYKVYYTQDQSLPMSAWETQVVD---NNQLTTISDLTPHTIYTIRVQAF 559
V+Y E D ++ TI++L+P+T ++++
Sbjct: 383 FGYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTITNLSPYTNVSVKLILM 442
Query: 560 TSVGPGPLSAPVLVKTQQGVPSQ-PRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWN 618
G S ++V+T + +P P + E + L W +PT + I YE+ +
Sbjct: 443 NPEGRKE-SQELIVQTDEDLPGAVPTESIQGSTFEEKIFLQWREPTQTYGVITLYEITY- 500
Query: 619 DTYAKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVETYS 678
K S + D ++ ++G +
Sbjct: 501 ------------------------KAVSSFDP-------EIDLSNQSGRVSKLGNETHFL 529
Query: 679 LTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQNVSC-EPLSSTSIRISW 737
GLYP T Y + A + +G G TK P P + + ++ +
Sbjct: 530 FFGLYPGTTYSFTIRASTAKGFGPPATNQ-FTTKISAPSMPAYELETPLNQTDNTVTVML 588
Query: 738 EPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFVLDELKKWTEYRIWVLAGTS 797
+P + Y++ E ++ + LK + + + + A
Sbjct: 589 KPA--HSRGAPVSVYQIVVEEERPRRTKKTTEILKCYPVPIHFQNASLLNSQYYFAAEFP 646
Query: 798 IGDGPSSYPITIRTHEDDPSEVCPTQNDFRKNKKTNGSNFKGGYLNDPMRFDVSDGGALE 857
++ P TI ++ GY N P
Sbjct: 647 ADSLQAAQPFTIGDNKTY-----------------------NGYWNTP------------ 671
Query: 858 LNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKTPGGVPNRP 900
L P Y I A +R + + T G +P
Sbjct: 672 -----LLPYKSYRIYFQAASRANGETKIDCVQVATKGAATPKP 709
Score = 216 bits (551), Expect = 1e-59
Identities = 93/584 (15%), Positives = 176/584 (30%), Gaps = 101/584 (17%)
Query: 85 RRGRLAHAVRQVADPVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKG-Q 143
+G LA +V P F +EV C A+G + +
Sbjct: 146 HQGYLAIDEVKVLGHPCTRTPHF--LRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGI 203
Query: 144 NIELTPDDKLPVGRNV-----LTLDRVTESE--NYTCIAASVLGVIETSTIVKVQCKYAP 196
++ P ++ V + + T+ + Y C+ + GV ++ V +
Sbjct: 204 DVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKE--- 260
Query: 197 LLTLPVAPLDVKISEVTATSVRLDWTYPSET----LLYYVIQYKPKAANTPYSEISGIIT 252
PV +++ V AT + + S ++ ++Y A+ +++ + +
Sbjct: 261 ---PPVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCT--ASGSWNDRQPVDS 315
Query: 253 TYYTVRNLSPYTEYEFYIIAVNN--LGRGPPSSPAVITTGETEPGTAPRDVQVRPLSSST 310
T Y + +L P TEYE ++ G G P T +P PR ++V + S
Sbjct: 316 TSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSRQ 375
Query: 311 MVIQWDEPETPNGQITAKH--------------------HRRIGLVETYSLTGLYPNTLY 350
+ I+W+ + + + +++T L P T
Sbjct: 376 ITIRWEPFGYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTITNLSPYTNV 435
Query: 351 YIWLAAQSPRGEGATTPPIPVRTKQYGKTPGFGEQAAKHHRRIGLVETYSLT-----GLY 405
+ L +P G + + V+T + PG A G +
Sbjct: 436 SVKLILMNPEGRKE-SQELIVQTDE--DLPG----AVPTESIQGSTFEEKIFLQWREPTQ 488
Query: 406 PN---TLYYIWLAAQSPRGEGATTPPIPVRTKQYGKTPGFGEQALYPNTLYYIWLAAQSP 462
TLY I A S R + G F LYP T Y + A +
Sbjct: 489 TYGVITLYEITYKAVSSFDPEIDLSNQSGRVSKLGNETHFLFFGLYPGTTYSFTIRASTA 548
Query: 463 RGEGATTPPIPVRTKQYEPGTAPRDVQVR-PLSSSTMVIQWDEPETPNGQITGYKVYYTQ 521
+G G TK P +++ + +T+ + + ++ Y++ +
Sbjct: 549 KGFGPPATNQ-FTTKISAPSMPAYELETPLNQTDNTVTVMLKPAHSRGAPVSVYQIVVEE 607
Query: 522 DQSLPMSAWETQ--------------------------------------VVDNNQLT-- 541
++ + DN
Sbjct: 608 ERPRRTKKTTEILKCYPVPIHFQNASLLNSQYYFAAEFPADSLQAAQPFTIGDNKTYNGY 667
Query: 542 TISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPSQPRD 585
+ L P+ Y I QA + V V T+ +P
Sbjct: 668 WNTPLLPYKSYRIYFQAASRANGETKIDCVQVATKGAATPKPVP 711
Score = 201 bits (511), Expect = 2e-54
Identities = 104/655 (15%), Positives = 192/655 (29%), Gaps = 65/655 (9%)
Query: 123 LNLSCVAVGSPMPFVKWRK-GQNIELTPDDKLPVGRNVLTLDRVTESENYTCIAASVLGV 181
LN+ P+ W G +L + Y I +
Sbjct: 94 LNVYVKVNNGPLGNPIWNISGDPTRTWNRAELAI--------STFWPNFYQVIFEVITSG 145
Query: 182 IETS-TIVKVQCKYAPLLTLPVAPLDVKISEVTATSVRLDWTYPSETLLYYVIQYKPKAA 240
+ I +V+ P P + + T+ + +
Sbjct: 146 HQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDV 205
Query: 241 NTPYSEISGIITT-----YYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPG 295
+ + ++ + V N + ++ + G G + ++ EP
Sbjct: 206 RDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVK---EPP 262
Query: 296 TAPRDVQVRPLSSSTMVIQWDEPE-TPNGQIT-----------AKHHRRIGLVETYSLTG 343
Q+ + ++ + IQ + +G I + + R+ +Y +
Sbjct: 263 VPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTASGSWNDRQPVDSTSYKIGH 322
Query: 344 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYGKTPGFGEQAAKHHRRIGLVETYSLT- 402
L P+T Y I + P G +P +RT+ P + V++ +T
Sbjct: 323 LDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPM----RGPRKLEVVEVKSRQITI 378
Query: 403 ---------GLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYGKTPGFGEQALYPNTLY 453
+ + + G V P L P T
Sbjct: 379 RWEPFGYNVTRCHSYNLTVH---YCYQVGGQEQVREEVSWDTENSHPQHTITNLSPYTNV 435
Query: 454 YIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQIT 513
+ L +P G + + V+T + PG P + + +QW EP G IT
Sbjct: 436 SVKLILMNPEGRKES-QELIVQTDEDLPGAVPTESIQGSTFEEKIFLQWREPTQTYGVIT 494
Query: 514 GYKVYY------TQDQSLPMSAWETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVGPGPL 567
Y++ Y + L + + N L P T Y+ ++A T+ G GP
Sbjct: 495 LYEITYKAVSSFDPEIDLSNQSGRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGP- 553
Query: 568 SAPVLVKTQQGVPSQPRDLRAVDIQETA--VTLAWSKPTHSGENIISYELYWNDTYAKPR 625
A T+ PS P + +T VT+ G + Y++ + +PR
Sbjct: 554 PATNQFTTKISAPSMPAYELETPLNQTDNTVTVMLKPAHSRGAPVSVYQIVVEEE--RPR 611
Query: 626 DLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHR-RIGLVETYSL---TG 681
+ + S N Y + IG +TY+ T
Sbjct: 612 RTKKTTEILKCYPVPIHFQNASLLNSQYYFAAEFPADSLQAAQPFTIGDNKTYNGYWNTP 671
Query: 682 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRIS 736
L P Y I+ A S + V TK P E + +++ +
Sbjct: 672 LLPYKSYRIYFQAASRANGETKIDCVQVATKGAATPKPVPEP--EKQTDHTVKGT 724
Score = 193 bits (490), Expect = 1e-51
Identities = 72/397 (18%), Positives = 125/397 (31%), Gaps = 55/397 (13%)
Query: 432 RTKQYGKTPGFGEQALYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVR 491
T F ++ G G + V EP Q+
Sbjct: 215 VTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVK---EPPVPIAPPQLA 271
Query: 492 PLSSSTMVIQWDEPE-TPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLTTISDLTPHT 550
+ ++ + IQ + +G I +V Y +W + ++ I L P T
Sbjct: 272 SVGATYLWIQLNANSINGDGPIVAREVEYCTASG----SWNDRQPVDSTSYKIGHLDPDT 327
Query: 551 IYTIRVQAFT--SVGPGPLSAPVLVKTQQGVPSQ-PRDLRAVDIQETAVTLAWSKPTHSG 607
Y I V G G + +T+ P + PR L V+++ +T+ W ++
Sbjct: 328 EYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSRQITIRWEPFGYNV 387
Query: 608 ENIISYELYWNDTYAKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKH 667
SY L + + E + + +
Sbjct: 388 TRCHSYNLT----------------------VHYCYQVGGQEQVREEVSWDTENS----- 420
Query: 668 HRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQNVSCEP 727
+++T L P T + L +P G + + V+T + +PGA P
Sbjct: 421 ------HPQHTITNLSPYTNVSVKLILMNPEGRKE-SQELIVQTDEDLPGAVPTESIQGS 473
Query: 728 LSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEA-------SIVTLKNQTSFVLD 780
I + W P ++ G I Y++ + D E + L N+T F+
Sbjct: 474 TFEEKIFLQWREPT--QTYGVITLYEITYKAVSSFDPEIDLSNQSGRVSKLGNETHFLFF 531
Query: 781 ELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDPS 817
L T Y + A T+ G GP + T PS
Sbjct: 532 GLYPGTTYSFTIRASTAKGFGPPA-TNQFTTKISAPS 567
Score = 172 bits (437), Expect = 7e-45
Identities = 71/486 (14%), Positives = 124/486 (25%), Gaps = 77/486 (15%)
Query: 450 NTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPN 509
+ +G A + R V + Q
Sbjct: 134 FYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTV 193
Query: 510 GQITGYKVYYTQDQSLPMSAWETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVGPGPLSA 569
+ + T + + T R T G G +
Sbjct: 194 AGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNY 253
Query: 570 PVLVKTQQGVPSQPRDLRAVDIQETAVTLAWSKPTHSGE-NIISYELYWNDTYAKPRDLR 628
LV + VP P + + T + + + + +G+ I++ E+ + D +
Sbjct: 254 AELVVKEPPVPIAP--PQLASVGATYLWIQLNANSINGDGPIVAREVEYCTASGSWNDRQ 311
Query: 629 AVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVETYSLTGLYPNTLY 688
VD +Y + L P+T Y
Sbjct: 312 PVD------------------------------------------STSYKIGHLDPDTEY 329
Query: 689 YIWLAAQSP--RGEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSN 746
I + P G G+ P + RTK P P+ + + S I I WEP +
Sbjct: 330 EISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSRQITIRWEPFGYNVTR 389
Query: 747 GHIVYYKLQFVETGRSDSEASIVTLK----NQTSFVLDELKKWTEYRIWVLAGTSIGDGP 802
H + + + + + L +T + ++ G
Sbjct: 390 CHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRKE 449
Query: 803 SSYPITIRTHEDDPSEVCPTQNDFRKNKKT------------------------NGSNFK 838
S + ++T ED P V ++ S
Sbjct: 450 SQ-ELIVQTDEDLPGAVPTESIQGSTFEEKIFLQWREPTQTYGVITLYEITYKAVSSFDP 508
Query: 839 GGYLNDPMRFDVSDGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKTPGGVPN 898
L++ G GL P T Y+ + A T KG G + T P+
Sbjct: 509 EIDLSNQSGRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPPA-TNQFTTKISAPS 567
Query: 899 RPHVNL 904
P L
Sbjct: 568 MPAYEL 573
Score = 40.1 bits (93), Expect = 0.003
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 33 PGTAPRDVQVRPLSSSTMVIQWDEPETPNGQIT 65
PG P + + +QW EP G IT
Sbjct: 462 PGAVPTESIQGSTFEEKIFLQWREPTQTYGVIT 494
Score = 39.0 bits (90), Expect = 0.008
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 33 PGTAPRDVQVRPLSSSTMVIQWDEPETPNGQI 64
P PR ++V + S + I+W+ +
Sbjct: 359 PMRGPRKLEVVEVKSRQITIRWEPFGYNVTRC 390
Score = 29.4 bits (65), Expect = 6.4
Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 28 ILVTEPGTAPRDVQVRPLSSSTMVIQWDEPE-TPNGQITH 66
++V EP Q+ + ++ + IQ + +G I
Sbjct: 256 LVVKEPPVPIAPPQLASVGATYLWIQLNANSINGDGPIVA 295
>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein;
2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A
Length = 368
Score = 199 bits (508), Expect = 5e-57
Identities = 76/427 (17%), Positives = 140/427 (32%), Gaps = 76/427 (17%)
Query: 481 PGTAPRDVQVRPLS-SSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQ 539
P + P ++ + + + + W+ TP+ ITGY++ T ++ E V +
Sbjct: 1 PLSPPTNLHLEANPDTGVLTVSWERSTTPD--ITGYRITTTPTNGQQGNSLEEVVHADQS 58
Query: 540 LTTISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLA 599
T +L+P Y + V V S P+ VP P DLR +I + +
Sbjct: 59 SCTFDNLSPGLEYNVSVYT---VKDDKESVPISDTIIPAVPP-PTDLRFTNIGPDTMRVT 114
Query: 600 WSKPTHSGENIISYELYWNDTYAKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWN 659
W+ P ++ ++ + + P + E++ + +
Sbjct: 115 WAPP--PSIDLTNFLVRY-------------------------SPVKNEEDVAELSISPS 147
Query: 660 DTYAKAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAP 719
D LT L P T Y + +++ + E P+R +Q
Sbjct: 148 DN--------------AVVLTNLLPGTEYVVSVSSVYEQHEST-----PLRGRQKTGLDS 188
Query: 720 PQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFVL 779
P + +++ S + W P I Y+++ S ++ S L
Sbjct: 189 PTGIDFSDITANSFTVHWIAP-----RATITGYRIRHHPEHFSGRPREDRVPHSRNSITL 243
Query: 780 DELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDPSEVC-PTQNDFRKN------KKT 832
L TEY + ++A + P I
Sbjct: 244 TNLTPGTEYVVSIVALNGREESPLL----IGQQSTVSDVPRDLEVVAATPTSLLISWDAP 299
Query: 833 NGS------NFKGGYLNDPMRFDVSDGGALELNVTGLQPDTIYTIQVAALTRKGDGD-RS 885
+ + N P++ G ++GL+P YTI V A+T +GD S
Sbjct: 300 AVTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGRGDSPASS 359
Query: 886 KPETIKT 892
KP +I
Sbjct: 360 KPISINY 366
Score = 184 bits (468), Expect = 1e-51
Identities = 74/366 (20%), Positives = 127/366 (34%), Gaps = 65/366 (17%)
Query: 447 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPE 506
L P Y + + E PI P P D++ + TM + W P
Sbjct: 65 LSPGLEYNVSVYTVKDDKES---VPISDTIIPAVP--PPTDLRFTNIGPDTMRVTWAPP- 118
Query: 507 TPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVGPGP 566
P+ +T + V Y+ ++ A + +N +++L P T Y + V +
Sbjct: 119 -PSIDLTNFLVRYSPVKNEEDVAELSISPSDNA-VVLTNLLPGTEYVVSVSSVYEQHEST 176
Query: 567 LSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKPRD 626
L Q+ P + DI + T+ W P + I Y +
Sbjct: 177 ----PLRGRQKTGLDSPTGIDFSDITANSFTVHWIAPRAT---ITGYRIRH--------- 220
Query: 627 LRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVETYSLTGLYPNT 686
P H + + + +LT L P T
Sbjct: 221 ----------------HPEHFSGRPREDRVPHSRN--------------SITLTNLTPGT 250
Query: 687 LYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSN 746
Y + + A + R E P+ + + V P+++ + TS+ ISW+ P
Sbjct: 251 EYVVSIVALNGREES----PLLIGQQSTVSD-VPRDLEVVAATPTSLLISWDAP-----A 300
Query: 747 GHIVYYKLQFVETGRSDSEASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDGP-SSY 805
+ YY++ + ETG + ++++ + LK +Y I V A T GD P SS
Sbjct: 301 VTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGRGDSPASSK 360
Query: 806 PITIRT 811
PI+I
Sbjct: 361 PISINY 366
Score = 159 bits (405), Expect = 4e-43
Identities = 77/405 (19%), Positives = 127/405 (31%), Gaps = 68/405 (16%)
Query: 201 PVAPLDVKISEVTATS-VRLDWTYPSE-TLLYYVIQYKPKAA--NTPYSEISGIITTYYT 256
P ++ + T + + W + + Y I P E+ + T
Sbjct: 2 LSPPTNLHLEANPDTGVLTVSWERSTTPDITGYRITTTPTNGQQGNSLEEVVHADQSSCT 61
Query: 257 VRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWD 316
NLSP EY + V + P S T P P D++ + TM + W
Sbjct: 62 FDNLSPGLEYNVSVYTVKDDKESVPIS---DTIIPAVP--PPTDLRFTNIGPDTMRVTWA 116
Query: 317 EPETPNGQIT--------------AKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGE 362
P P+ +T LT L P T Y + +++ + E
Sbjct: 117 PP--PSIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHE 174
Query: 363 GATTPPIPVRTKQYGKTPGFGEQAAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGE 422
P+R +Q + + N+ W +PR
Sbjct: 175 ST-----PLRGRQKTGLDS--------------PTGIDFSDITANSFTVHW---IAPRAT 212
Query: 423 --------GATTPPIPVRTKQYGKTPGFGE-QALYPNTLYYIWLAAQSPRGEGATTPPIP 473
R + + L P T Y + + A + R E
Sbjct: 213 ITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESP-----L 267
Query: 474 VRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQ 533
+ +Q PRD++V + ++++I WD P + Y++ Y + E
Sbjct: 268 LIGQQSTVSDVPRDLEVVAATPTSLLISWDA---PAVTVRYYRITY-GETGGNSPVQEFT 323
Query: 534 VVDNNQLTTISDLTPHTIYTIRVQAFTSVGPGPLSAP---VLVKT 575
V + TIS L P YTI V A T G P S+ + +T
Sbjct: 324 VPGSKSTATISGLKPGVDYTITVYAVTGRGDSPASSKPISINYRT 368
Score = 148 bits (375), Expect = 4e-39
Identities = 69/441 (15%), Positives = 135/441 (30%), Gaps = 96/441 (21%)
Query: 294 PGTAPRDVQVRPLS-SSTMVIQWDEPETPN------------GQITAKHHRRIGLVET-Y 339
P + P ++ + + + + W+ TP+ GQ + ++
Sbjct: 1 PLSPPTNLHLEANPDTGVLTVSWERSTTPDITGYRITTTPTNGQQGNSLEEVVHADQSSC 60
Query: 340 SLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYGKTPGFGEQAAKHHRRIGLVETY 399
+ L P Y + + E PI P L
Sbjct: 61 TFDNLSPGLEYNVSVYTVKDDKES---VPISDTIIPAVPPPT------------DL---- 101
Query: 400 SLTGLYPNTLYYIWLAAQSPRGEG-------ATTPPIPVRTKQYGKTPGFGEQALYPNTL 452
T + P+T+ W S L P T
Sbjct: 102 RFTNIGPDTMRVTWAPPPSIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTE 161
Query: 453 YYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQI 512
Y + +++ + E P+R +Q +P + +++++ + W P I
Sbjct: 162 YVVSVSSVYEQHEST-----PLRGRQKTGLDSPTGIDFSDITANSFTVHWIAP---RATI 213
Query: 513 TGYKVYYTQDQSLPMSAWETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVGPGPLSAPVL 572
TGY++ + + + N T+++LTP T Y + + A PL
Sbjct: 214 TGYRIRHHPEHFSGRPREDRVPHSRNS-ITLTNLTPGTEYVVSIVALNGREESPLL---- 268
Query: 573 VKTQQGVPSQPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKPRDLRAVDI 632
+ Q V PRDL V T++ ++W P + Y + +
Sbjct: 269 IGQQSTVSDVPRDLEVVAATPTSLLISWDAP---AVTVRYYRITY--------------- 310
Query: 633 QETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVETYSLTGLYPNTLYYIWL 692
T + + + + + T +++GL P Y I +
Sbjct: 311 ----------GETGGNSPVQEFTVPGSKS--------------TATISGLKPGVDYTITV 346
Query: 693 AAQSPRGEG-ATTPPIPVRTK 712
A + RG+ A++ PI + +
Sbjct: 347 YAVTGRGDSPASSKPISINYR 367
Score = 127 bits (320), Expect = 8e-32
Identities = 47/289 (16%), Positives = 96/289 (33%), Gaps = 26/289 (8%)
Query: 624 PRDLRAVDIQET-AVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVET---YSL 679
P +L +T +T++W + T +I Y + T + + + +
Sbjct: 5 PTNLHLEANPDTGVLTVSWERST--TPDITGYRITTTPTNGQQGNSLEEVVHADQSSCTF 62
Query: 680 TGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEP 739
L P Y + + E PI VP PP ++ + ++R++W P
Sbjct: 63 DNLSPGLEYNVSVYTVKDDKES---VPISDTIIPAVP--PPTDLRFTNIGPDTMRVTWAP 117
Query: 740 PPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSIG 799
PP + + + +++ + A + + + VL L TEY + V +
Sbjct: 118 PP----SIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQH 173
Query: 800 DGPSSYPITIRTHEDDPSEV---CPTQNDFRKN-KKTNGS------NFKGGYLNDPMRFD 849
+ +T D P+ + T N F + + + + R D
Sbjct: 174 ESTPLRGRQ-KTGLDSPTGIDFSDITANSFTVHWIAPRATITGYRIRHHPEHFSGRPRED 232
Query: 850 VSDGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKTPGGVPN 898
+ +T L P T Y + + AL + + + +
Sbjct: 233 RVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLLIGQQSTVSDVPRD 281
Score = 120 bits (303), Expect = 1e-29
Identities = 78/384 (20%), Positives = 137/384 (35%), Gaps = 59/384 (15%)
Query: 33 PGTAPRDVQVRPLS-SSTMVIQWDEPETPN------------GQITHPPTRAARSHARLA 79
P + P ++ + + + + W+ TP+ GQ + +
Sbjct: 1 PLSPPTNLHLEANPDTGVLTVSWERSTTPDITGYRITTTPTNGQQGNSLEEVVHADQSSC 60
Query: 80 AQSVLRRGRLAH-AVRQVADPVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVK 138
L G + +V V D VP +I P P +L +G V
Sbjct: 61 TFDNLSPGLEYNVSVYTVKDDKESVPISDTIIPAV------PPPTDLRFTNIGPDTMRVT 114
Query: 139 WRKGQNIELT---------------PDDKLPVGRNVLTLDRVTESENYTCIAASVLGVIE 183
W +I+LT + + N + L + Y +SV E
Sbjct: 115 WAPPPSIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHE 174
Query: 184 TSTIVKVQCKYAPLLTLPVAPLDVKISEVTATSVRLDWTYPSETLLYYVIQYKPKAANTP 243
++ + Q T +P + S++TA S + W P T+ Y I++ P+ +
Sbjct: 175 STPLRGRQ------KTGLDSPTGIDFSDITANSFTVHWIAPRATITGYRIRHHPEHFSGR 228
Query: 244 YSEISGIIT-TYYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQ 302
E + T+ NL+P TEY I+A+N P T PRD++
Sbjct: 229 PREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLLI----GQQSTVSD-VPRDLE 283
Query: 303 VRPLSSSTMVIQWDEPE-----------TPNGQITAKHHRRIGLVETYSLTGLYPNTLYY 351
V + ++++I WD P G + G T +++GL P Y
Sbjct: 284 VVAATPTSLLISWDAPAVTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYT 343
Query: 352 IWLAAQSPRGEG-ATTPPIPVRTK 374
I + A + RG+ A++ PI + +
Sbjct: 344 ITVYAVTGRGDSPASSKPISINYR 367
Score = 93.0 bits (231), Expect = 2e-20
Identities = 56/297 (18%), Positives = 98/297 (32%), Gaps = 43/297 (14%)
Query: 25 PGYILVTEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITHPPTRAARSHARLAAQSVL 84
P + P D++ + TM + W P P+ +T+ R + +
Sbjct: 86 PISDTIIPAVPPPTDLRFTNIGPDTMRVTWAPP--PSIDLTNFLVRYSPVKNEEDVAELS 143
Query: 85 RRGRLAHA--------------VRQVADPVRRVPPQFSIPPPALLEVMLDSPLNLSCVAV 130
V V + P + LDSP + +
Sbjct: 144 ISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQKTG------LDSPTGIDFSDI 197
Query: 131 GS---------PMP-----FVKWRKGQNIELTPDDKLPVGRNVLTLDRVTESENYTCIAA 176
+ P ++ +D++P RN +TL +T Y
Sbjct: 198 TANSFTVHWIAPRATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIV 257
Query: 177 SVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISEVTATSVRLDWTYPSETLLYYVIQYK 236
++ G E+ ++ Q T+ P D+++ T TS+ + W P+ T+ YY I Y
Sbjct: 258 ALNGREESPLLIGQQS------TVSDVPRDLEVVAATPTSLLISWDAPAVTVRYYRITYG 311
Query: 237 PKAANTPYSEIS-GIITTYYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGET 292
N+P E + + T+ L P +Y + AV G P SS + T
Sbjct: 312 ETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGRGDSPASSKPISINYRT 368
Score = 85.7 bits (212), Expect = 6e-18
Identities = 35/201 (17%), Positives = 60/201 (29%), Gaps = 28/201 (13%)
Query: 716 PGAPPQNVSCEPLSSTSI-RISWEPPPVERSNGHIVYYKLQFVET-GRSDSEASIVTLKN 773
P +PP N+ E T + +SWE I Y++ T G+ + V +
Sbjct: 1 PLSPPTNLHLEANPDTGVLTVSWERST----TPDITGYRITTTPTNGQQGNSLEEVVHAD 56
Query: 774 QTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDPSEVCPTQNDFRKNKKTN 833
Q+S D L EY + V + D S PI+ P PT F
Sbjct: 57 QSSCTFDNLSPGLEYNVSVYT---VKDDKESVPISDTIIPAVPP---PTDLRFTNIGPDT 110
Query: 834 ---------GSNFKG-------GYLNDPMRFDVSDGGALELNVTGLQPDTIYTIQVAALT 877
+ + + + +T L P T Y + V+++
Sbjct: 111 MRVTWAPPPSIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVY 170
Query: 878 RKGDGDRSKPETIKTPGGVPN 898
+ + +
Sbjct: 171 EQHESTPLRGRQKTGLDSPTG 191
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 187 bits (477), Expect = 1e-52
Identities = 55/301 (18%), Positives = 106/301 (35%), Gaps = 42/301 (13%)
Query: 102 RVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPV------ 155
P+F +P+N+SC +P + WR+ + L + +
Sbjct: 98 EYAPKFISNQTIY-YSWEGNPINISCDVKSNPPASIHWRRD-KLVLPAKNTTNLKTYSTG 155
Query: 156 GRNVLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISEVT 213
+ +L + ++++ Y C A + +G I+ + +P +P VKI E++
Sbjct: 156 RKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALA-------DVPSSPYGVKIIELS 208
Query: 214 ATSVRLDWTYPSET----LLYYVIQYKPKAANTPYSEISGIITTYYTVRNLSPYTEYEFY 269
T+ ++ + P + +Y + K A+ S + T + NL P T YE
Sbjct: 209 QTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIR 268
Query: 270 IIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITA-- 327
+ AVN G+G S + T + P + +P S + + + + I
Sbjct: 269 VAAVNGKGQGDYSKIEIFQTLPVREPSPP-SIHGQPSSGKSFKLSITKQDDGGAPILEYI 327
Query: 328 ------------KHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGA------TTPPI 369
+ G + L L Y + + A + G + PP
Sbjct: 328 VKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMPPK 387
Query: 370 P 370
P
Sbjct: 388 P 388
Score = 139 bits (351), Expect = 1e-35
Identities = 75/497 (15%), Positives = 136/497 (27%), Gaps = 132/497 (26%)
Query: 108 SIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRK-GQNIELTPDDKLPVGR--------- 157
I + + L C A G P+P + W++ T DK GR
Sbjct: 3 HIIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGS 62
Query: 158 NVLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISE---- 211
+ L + V S+ Y C AAS +G + S + ++ YAP
Sbjct: 63 SSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE--YAPKFISNQTIYYSWEGNPINI 120
Query: 212 -VTAT---SVRLDWTYPSETLLYYVIQYKPKAANTPYSEISGIITTYYTVRNLSPYTEYE 267
+ W L P T S + S
Sbjct: 121 SCDVKSNPPASIHWRRDKLVL--------PAKNTTNLKTYSTGRKMILEIAPTSDNDFGR 172
Query: 268 FYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITA 327
+ A N++G + + ++P V++ LS +T + +++P++ G
Sbjct: 173 YNCTATNHIG----TRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGV--- 225
Query: 328 KHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYGKTPGFGEQAA 387
P Y + + +
Sbjct: 226 ------------------PIHHYQV----------------------DVKEVASEIWKIV 245
Query: 388 KHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYGKTPGFGEQAL 447
+ H G+ L L PNT Y I +AA + +G+G + +T
Sbjct: 246 RSH---GVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPV----------- 291
Query: 448 YPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPET 507
P +P + +P S + + + +
Sbjct: 292 ---------------------REP------------SPPSIHGQPSSGKSFKLSITKQDD 318
Query: 508 PNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLT-TISDLTPHTIYTIRVQAFTSVGPGP 566
I Y V Y W + V N+ + L Y +++ A +G
Sbjct: 319 GGAPILEYIVKYRSKDKE--DQWLEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSE 376
Query: 567 LSAPVLVKTQQGVPSQP 583
+ + +P +P
Sbjct: 377 PTVY-----EFSMPPKP 388
Score = 123 bits (310), Expect = 2e-30
Identities = 38/185 (20%), Positives = 81/185 (43%), Gaps = 5/185 (2%)
Query: 624 PRDLRAVDIQETAVTLAWSKP-THSGENIISYELYWNDTYAKA-KHHRRIGLVETYSLTG 681
P ++ +++ +T ++++KP +H G I Y++ + ++ K R G+ L
Sbjct: 199 PYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLNN 258
Query: 682 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPP 741
L PNT Y I +AA + +G+G + +T +PP ++ +P S S ++S
Sbjct: 259 LEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPP-SIHGQPSSGKSFKLSITKQ- 316
Query: 742 VERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDG 801
+ I+ Y +++ + D N+ +L+ L+ Y + + A +G
Sbjct: 317 -DDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYS 375
Query: 802 PSSYP 806
+
Sbjct: 376 EPTVY 380
Score = 106 bits (265), Expect = 1e-24
Identities = 40/238 (16%), Positives = 76/238 (31%), Gaps = 49/238 (20%)
Query: 484 APRDVQVRPLSSSTMVIQWDEPETPNGQ-ITGYKVYYTQDQSLPMSAWETQVVDNNQLT- 541
+P V++ LS +T + +++P++ G I Y+V + S W+ Q
Sbjct: 198 SPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVAS---EIWKIVRSHGVQTMV 254
Query: 542 TISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLAWS 601
+++L P+T Y IRV A G G S + +T P + + L+ +
Sbjct: 255 VLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPPSIHGQPSSGKSFKLSIT 314
Query: 602 KPTHSGENIISYELYWNDTYAKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDT 661
K G I+ Y + + + + + ++ N
Sbjct: 315 KQDDGGAPILEYIVKY-------------------------RSKDKEDQWLEKKVQGNKD 349
Query: 662 YAKAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAP 719
L L Y + + A + G P + +P P
Sbjct: 350 --------------HIILEHLQWTMGYEVQITAANRLGYSE-----PTVYEFSMPPKP 388
Score = 92.9 bits (231), Expect = 3e-20
Identities = 44/204 (21%), Positives = 64/204 (31%), Gaps = 29/204 (14%)
Query: 715 VPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGH--IVYYKLQFVETGRSDSEASIVTLK 772
VP P V LS T+ ++S+ P S+G I +Y++ E +
Sbjct: 195 VPS-SPYGVKIIELSQTTAKVSFNKP---DSHGGVPIHHYQVDVKEVASEIWKIVRSHGV 250
Query: 773 NQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDPS-----EVCPTQNDF- 826
QT VL+ L+ T Y I V A G G S +T P+
Sbjct: 251 -QTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPPSIHGQPSSGKSF 309
Query: 827 ----RKNKKTNGSNFKGGYL--------NDPMRFDVSDGGALELNVTGLQPDTIYTIQVA 874
K Y+ D G + + LQ Y +Q+
Sbjct: 310 KLSITKQDDGGAPIL--EYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQIT 367
Query: 875 ALTRKGDGDRSKPETIKTPGGVPN 898
A R G + + E P PN
Sbjct: 368 AANRLGYSEPTVYEFSMPP--KPN 389
Score = 39.8 bits (93), Expect = 0.003
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 851 SDGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKT-PGGVPNRPHVN 903
S G + + L+P+T Y I+VAA+ KG GD SK E +T P P+ P ++
Sbjct: 247 SHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPPSIH 300
Score = 37.1 bits (86), Expect = 0.022
Identities = 7/41 (17%), Positives = 13/41 (31%), Gaps = 2/41 (4%)
Query: 28 ILVTEPGTAP--RDVQVRPLSSSTMVIQWDEPETPNGQITH 66
I T P P + +P S + + + + I
Sbjct: 285 IFQTLPVREPSPPSIHGQPSSGKSFKLSITKQDDGGAPILE 325
Score = 34.0 bits (78), Expect = 0.24
Identities = 9/41 (21%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 27 YILVTEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQ-ITH 66
+ + + ++P V++ LS +T + +++P++ G I H
Sbjct: 189 ILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHH 229
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 195 bits (497), Expect = 6e-52
Identities = 73/581 (12%), Positives = 150/581 (25%), Gaps = 116/581 (19%)
Query: 248 SGIITTYYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLS 307
G + +Y L ++ ++ + + S
Sbjct: 423 QGKLFFHYN-PKLCLSEIHKMEEVSGTKGRQERNDIALKTNGDQASCENELLKFSYIRTS 481
Query: 308 SSTMVIQWDEPETPNGQITAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTP 367
++++W+ P+ + + L ++ ++P
Sbjct: 482 FDKILLRWEPYWPPDFR----------------------DLLGFMLFYKEAPYQNVTEFD 519
Query: 368 PIPVRTKQYGKTPGFGEQAAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTP 427
+ + + + GL P T Y I++ +
Sbjct: 520 GQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDE---- 575
Query: 428 PIPVRTKQYGKTPGFGEQALYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRD 487
R GA + I V+T P P D
Sbjct: 576 ----------------------------------RRTYGAKSDIIYVQTDATNPS-VPLD 600
Query: 488 VQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLTTISDLT 547
SSS ++++W P PNG IT Y V++ + + +L
Sbjct: 601 PISVSNSSSQIILKWKPPSDPNGNITHYLVFWERQAEDSELFELDYCLKGLKL------- 653
Query: 548 PHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLAWSKPTHSG 607
P ++ ++ S P + +++E++ + H
Sbjct: 654 PSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILK-ELEESSFRKTFEDYLH-- 710
Query: 608 ENIISYELYWNDTYAKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKH 667
N + S N +
Sbjct: 711 ----------NVVFVPR----------------------PSRKRRSLGDVGNAGNNEEHR 738
Query: 668 HRRIGLVET-YSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAP----PQN 722
+ + ++GL T Y I L A + + + +P A
Sbjct: 739 PFEKVVNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGP 798
Query: 723 VSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLK--NQTSFVLD 780
V+ E + + + W+ P + NG IV Y++ + G + + L
Sbjct: 799 VTHEIFENNVVHLMWQEP--KEPNGLIVLYEVSYRRYGDEELHLCDTRKHFALERGCRLR 856
Query: 781 ELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHE--DDPSEV 819
L Y + + A + G+G + P + D PS +
Sbjct: 857 GLSP-GNYSVRIRATSLAGNGSWTEPTYFYVTDYLDVPSNI 896
Score = 185 bits (471), Expect = 9e-49
Identities = 65/441 (14%), Positives = 117/441 (26%), Gaps = 53/441 (12%)
Query: 190 VQCKYAPLLTLPVAPLDVKISEVTATSVRLDWTYPSET----LLYYVIQYKPK------- 238
+ L + + L W LL +++ YK
Sbjct: 458 ALKTNGDQASCENELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTE 517
Query: 239 -----------------AANTPYSEISGIITTYYTVRNLSPYTEYEFYIIAVNNLG---- 277
++ + +R L P+T+Y ++ +
Sbjct: 518 FDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERR 577
Query: 278 -RGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQIT--------AK 328
G S + T T P P D SSS ++++W P PNG IT
Sbjct: 578 TYGAKSDIIYVQTDATNPS-VPLDPISVSNSSSQIILKWKPPSDPNGNITHYLVFWERQA 636
Query: 329 HHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYGKTPGFGEQAAK 388
+ ++ P+ + ++ + +
Sbjct: 637 EDSELFELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKEL 696
Query: 389 HHRRIGLV-ETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYGKTPGFGEQAL 447
E Y ++ + G P L
Sbjct: 697 EESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKV--VNKESLVISGL 754
Query: 448 YPNTLYYIWLAAQSPRGEGATTPPIP---VRTKQYE-PGTAPRDVQVRPLSSSTMVIQWD 503
T Y I L A + RT V ++ + + W
Sbjct: 755 RHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTHEIFENNVVHLMWQ 814
Query: 504 EPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLT-TISDLTPHTIYTIRVQAFTSV 562
EP+ PNG I Y+V Y + + +T+ + + L+P Y++R++A +
Sbjct: 815 EPKEPNGLIVLYEVSYRRYGDEELHLCDTRKHFALERGCRLRGLSP-GNYSVRIRATSLA 873
Query: 563 GPGPLSAPVLVKTQQG--VPS 581
G G + P VPS
Sbjct: 874 GNGSWTEPTYFYVTDYLDVPS 894
Score = 173 bits (438), Expect = 1e-44
Identities = 71/502 (14%), Positives = 142/502 (28%), Gaps = 103/502 (20%)
Query: 447 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPE 506
L + ++ + + + + + Q S ++++W+
Sbjct: 434 LCLSEIHKMEEVSGTKGRQERNDIALKTNGDQASCENELLKFSYIRTSFDKILLRWEPYW 493
Query: 507 TPNG-QITGYKVYYTQDQSLPMS-----------AWETQVVD-----------NNQLTTI 543
P+ + G+ ++Y + ++ +W +D N+ +
Sbjct: 494 PPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLM 553
Query: 544 SDLTPHTIYTIRVQAFTSVG-----PGPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTL 598
L P T Y I V+ + G S + V+T PS P D +V + + L
Sbjct: 554 RGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIIL 613
Query: 599 AWSKPTHSGENIISYELYWNDTYAKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYW 658
W P+ NI Y ++W E+ +EL +
Sbjct: 614 KWKPPSDPNGNITHYLVFW---------------------------ERQAEDSELFELDY 646
Query: 659 NDTYAKAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGA 718
P+ + ++ + + P
Sbjct: 647 CLK------------------GLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKT 688
Query: 719 PPQNVSCEPLSSTSIRISWEPPPVERSN----GHIVYYKLQFVETGRSDSEASIVTLKNQ 774
Q + L +S R ++E G ++ + N+
Sbjct: 689 DSQILK--ELEESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNK 746
Query: 775 TSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDPSEVCP------TQNDFRK 828
S V+ L+ +T YRI + A + P T F
Sbjct: 747 ESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTHEIFEN 806
Query: 829 N---------KKTNGS------NFKGGYLNDPMRFDVSDGGALELN--VTGLQPDTIYTI 871
N K+ NG +++ + D ALE + GL P Y++
Sbjct: 807 NVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCDTRKHFALERGCRLRGLSP-GNYSV 865
Query: 872 QVAALTRKGDGDRSKPETIKTP 893
++ A + G+G ++P
Sbjct: 866 RIRATSLAGNGSWTEPTYFYVT 887
Score = 125 bits (314), Expect = 2e-29
Identities = 48/372 (12%), Positives = 98/372 (26%), Gaps = 67/372 (18%)
Query: 584 RDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKPRDLRAVDIQETAVTLAWSK 643
L +I + + + + + + L W
Sbjct: 432 PKLCLSEIHKMEEVSGTKGRQERNDIALKTNGDQASCENELLKFSYIRTSFDKILLRWEP 491
Query: 644 PTHS-GENIISYELYW------NDTYAKAK-------------------HHRRIGLVETY 677
+++ + L++ N T + + + +
Sbjct: 492 YWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGW 551
Query: 678 SLTGLYPNTLYYIWLAAQSPRGE-----GATTPPIPVRTKQYVPGAPPQNVSCEPLSSTS 732
+ GL P T Y I++ + GA + I V+T P P + SS+
Sbjct: 552 LMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNPS-VPLDPISVSNSSSQ 610
Query: 733 IRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFVLDELKKWTEYRIWV 792
I + W+PP NG+I +Y + + L + +
Sbjct: 611 IILKWKPP--SDPNGNITHYLVFWERQAEDS------ELFELDYCLKGLKLPSRTWSPPF 662
Query: 793 LAGTSIGDGPSSYPITIRTHEDDPSE------------------------VCPTQNDFRK 828
+ S S Y + P V + ++
Sbjct: 663 ESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRPSRKR 722
Query: 829 NKKTNGSNFKGGYLNDPMRFDVSDGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPE 888
+ N + P V+ L ++GL+ T Y I++ A + +R
Sbjct: 723 RSLGDVGNAGNNEEHRPFEKVVNK---ESLVISGLRHFTGYRIELQACNQDTPEERCSVA 779
Query: 889 TIKTPGGVPNRP 900
+ +P
Sbjct: 780 AYVSARTMPEAK 791
Score = 116 bits (290), Expect = 1e-26
Identities = 58/403 (14%), Positives = 102/403 (25%), Gaps = 71/403 (17%)
Query: 338 TYSLTGLYPNTLYYIWLAAQSPRGE-----GATTPPIPVRTKQYGKTPGFGEQAAKHHRR 392
+ + GL P T Y I++ + GA + I V+T P
Sbjct: 550 GWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDA--TNPS----------V 597
Query: 393 IGLVETYSLTGLYPNTLYYIWLAAQSPRGEGAT---TPPIPVRTKQYGKTPGFGEQALYP 449
+ S + + + W P G + + + P
Sbjct: 598 PLDPISVSNS---SSQIILKWKPPSDPNGNITHYLVFWERQAEDSELFELDYCLKGLKLP 654
Query: 450 NTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPN 509
+ + ++ + + P T + ++ SS +
Sbjct: 655 SRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFRKTFEDYLHNVVF 714
Query: 510 GQITGYKVYYTQDQSLPMSAWET---QVVDNNQLTTISDLTPHTIYTIRVQAFTSVGPGP 566
K D + E + V N + IS L T Y I +QA P
Sbjct: 715 VPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESLVISGLRHFTGYRIELQACNQDTPEE 774
Query: 567 LSAP-----VLVKTQQGVPSQPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTY 621
+ + + + V L W +P I+ YE+ +
Sbjct: 775 RCSVAAYVSARTMPEAKADDIVGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSY---- 830
Query: 622 AKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVETYSLTG 681
R +E + L G
Sbjct: 831 ------RRYGDEELHLCDTRKHFALE---------------------------RGCRLRG 857
Query: 682 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQNVS 724
L P Y + + A S G G+ T P Y+ P N++
Sbjct: 858 LSPGN-YSVRIRATSLAGNGSWTEPTYFYVTDYLD--VPSNIA 897
Score = 91.9 bits (227), Expect = 4e-19
Identities = 51/350 (14%), Positives = 96/350 (27%), Gaps = 58/350 (16%)
Query: 171 YTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISEVTATSVRLDWTYPSE---T 227
+ S I+ VQ P PLD +++ + L W PS+
Sbjct: 569 LVTFSDERRTYGAKSDIIYVQTDATN----PSVPLDPISVSNSSSQIILKWKPPSDPNGN 624
Query: 228 LLYYVIQYKPKAANTPYSEISGIITTYYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVI 287
+ +Y++ ++ +A ++ Y P + + ++
Sbjct: 625 ITHYLVFWERQAEDSELF-----ELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSA 679
Query: 288 TTGETEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITAKHHRRIGLVE---------- 337
+ P T + ++ SS + ++ R +G V
Sbjct: 680 GECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRP 739
Query: 338 --------TYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIP---VRTKQYGKTPGFGEQA 386
+ ++GL T Y I L A + RT K
Sbjct: 740 FEKVVNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADD----- 794
Query: 387 AKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRG-----------EGATTPPIPVRTKQ 435
+V + N ++ +W + P G G + K
Sbjct: 795 --------IVGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCDTRKH 846
Query: 436 YGKTPGFGEQALYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAP 485
+ G + L P Y + + A S G G+ T P Y +
Sbjct: 847 FALERGCRLRGLSPGN-YSVRIRATSLAGNGSWTEPTYFYVTDYLDVPSN 895
Score = 89.2 bits (220), Expect = 2e-18
Identities = 47/303 (15%), Positives = 79/303 (26%), Gaps = 42/303 (13%)
Query: 35 TAPRDVQVRPLSSSTMVIQWDEPETPNGQITH--------PPTRAARSHA---------- 76
+ P D SSS ++++W P PNG ITH
Sbjct: 596 SVPLDPISVSNSSSQIILKWKPPSDPNGNITHYLVFWERQAEDSELFELDYCLKGLKLPS 655
Query: 77 RLAAQSVLRRGRLAHAVRQVADPVRRVPPQFSIPPPALLEVMLDSPL----NLSCVAVGS 132
R + H + D L E+ S + V
Sbjct: 656 RTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFV 715
Query: 133 PMPFVKWRKGQNIELTPDDKLPVGRNV-LTLDRVTESE-----NYT-----CIAASVLGV 181
P P K R ++ +++ + + + S Y C +
Sbjct: 716 PRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESLVISGLRHFTGYRIELQACNQDTPEER 775
Query: 182 IETSTIVKVQCKYAPLLTLPVAPLDVKISEVTATSVRLDWTYPSET---LLYYVIQYKPK 238
+ V + P V V L W P E ++ Y + Y+
Sbjct: 776 CSVAAYVSARTM--PEAKADDIVGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRY 833
Query: 239 A---ANTPYSEISGIITTYYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPG 295
+ + + +R LSP Y I A + G G + P +
Sbjct: 834 GDEELHLCDTRKHFALERGCRLRGLSP-GNYSVRIRATSLAGNGSWTEPTYFYVTDYLDV 892
Query: 296 TAP 298
+
Sbjct: 893 PSN 895
Score = 40.3 bits (93), Expect = 0.004
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 33 PGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITH 66
V ++ + + W EP+ PNG I
Sbjct: 792 ADDIVGPVTHEIFENNVVHLMWQEPKEPNGLIVL 825
>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin
type III domain, alternative cell membrane, disulfide
bond; 1.90A {Homo sapiens} PDB: 3l5j_A
Length = 290
Score = 177 bits (450), Expect = 5e-50
Identities = 55/335 (16%), Positives = 102/335 (30%), Gaps = 54/335 (16%)
Query: 481 PGTAPRDVQVRPLSSSTMVIQWDE--PETPNGQITGYKVYYTQDQSLPMSAWETQVVDNN 538
P + T+ + W P NG+I Y+V T+ +S + V+
Sbjct: 8 PSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKS----HLQNYTVNAT 63
Query: 539 QLTTISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTL 598
+LT + Y + VG + + + + P ++ + +
Sbjct: 64 KLTV---NLTNDRYLATLTVRNLVGKSDAA-VLTIPACDFQATHPVMDLKAFPKDNMLWV 119
Query: 599 AWSKPTHSGENIISYELYWNDTYAKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYW 658
W+ P E++ Y L W + W + +
Sbjct: 120 EWTTPR---ESVKKYILEWCVLS-----------DKAPCITDWQQEDGTVH--------- 156
Query: 659 NDTYAKAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGA 718
TY L + Y I + G G+ I KQ P
Sbjct: 157 ----------------RTYLRGNLAESKCYLITVTPVYADGPGSPES-IKAYLKQAPPSK 199
Query: 719 PPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFV 778
P V + + + W+ PV+ NG I Y + + +++ ++ + + T +
Sbjct: 200 GP-TVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGNETAVNVDS--SHTEYT 256
Query: 779 LDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHE 813
L L T Y + + A T G T T +
Sbjct: 257 LSSLTSDTLYMVRMAAYTDEGGKDGP-EFTFTTPK 290
Score = 129 bits (327), Expect = 2e-33
Identities = 52/281 (18%), Positives = 91/281 (32%), Gaps = 34/281 (12%)
Query: 634 ETAVTLAWS--KPTHSGENIISYELYWNDTYAKAKHHRRIGLVETYSLTGLYPNTLYYIW 691
V L W P + I+ YE+ + K H + V LT N Y
Sbjct: 22 YRTVQLVWKTLPPFEANGKILDYEVT----LTRWKSHLQNYTVNATKLTVNLTNDRYLAT 77
Query: 692 LAAQSPRGEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVY 751
L ++ G+ + + + P ++ P + + W P E +I+
Sbjct: 78 LTVRNLVGKSDAAV-LTIPACDFQATHPVMDLKAFP-KDNMLWVEWTTPR-ESVKKYILE 134
Query: 752 YKLQFVETGRSDSEASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRT 811
+ + + ++ +++ L + Y I V + G G I
Sbjct: 135 WCVLSDKAP-CITDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSPE-SIKAYL 192
Query: 812 HEDDPSEVCPTQNDFRKNKKT-------------NGSNFKGGY------LNDPMRFDVSD 852
+ PS+ PT + K NG F Y + D
Sbjct: 193 KQAPPSKG-PTVRTKKVGKNEAVLEWDQLPVDVQNG--FIRNYTIFYRTIIGNETAVNVD 249
Query: 853 GGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKTP 893
E ++ L DT+Y +++AA T +G D + T TP
Sbjct: 250 SSHTEYTLSSLTSDTLYMVRMAAYTDEGGKDGPEF-TFTTP 289
Score = 126 bits (319), Expect = 2e-32
Identities = 39/269 (14%), Positives = 83/269 (30%), Gaps = 48/269 (17%)
Query: 445 QALYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDE 504
N Y L ++ G+ + + ++ D++ P + + ++W
Sbjct: 66 TVNLTNDRYLATLTVRNLVGKSDAAV-LTIPACDFQATHPVMDLKAFP-KDNMLWVEW-- 121
Query: 505 PETPNGQITGYKVYYTQ--DQSLPMSAWETQVVDNNQLTTISDLTPHTIYTIRVQAFTSV 562
TP + Y + + D++ ++ W+ + ++ +L Y I V +
Sbjct: 122 -TTPRESVKKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYAD 180
Query: 563 GPGPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYA 622
GPG + +Q PS+ +R + + L W + +N
Sbjct: 181 GPGSPE-SIKAYLKQAPPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGF----------- 228
Query: 623 KPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVETYSLTGL 682
I +Y +++ Y+L+ L
Sbjct: 229 ----------------------------IRNYTIFYRTIIGNETAVNVDSSHTEYTLSSL 260
Query: 683 YPNTLYYIWLAAQSPRGEGATTPPIPVRT 711
+TLY + +AA + G P T
Sbjct: 261 TSDTLYMVRMAAYTDEGGK-DGPEFTFTT 288
Score = 123 bits (311), Expect = 2e-31
Identities = 51/389 (13%), Positives = 91/389 (23%), Gaps = 118/389 (30%)
Query: 201 PVAPLDVKISEVTA-----TSVRLDWTYPSET-----LLYYVIQYKPKAANTPYSEISGI 250
P + +V+L W +L Y + ++ ++
Sbjct: 4 PSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQNYTVNAT 63
Query: 251 ITTYYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLSSST 310
T Y + N +G+ + + T P +
Sbjct: 64 KLTVNL-----TNDRYLATLTVRNLVGKSDAAV--LTIPACDFQATHPVMDLKAFPKDNM 116
Query: 311 MVIQWDEPETPNGQITAKHHRRIGLVETYSLTGLYPNTLYYI-WLAAQSPRGEGATTPPI 369
+ ++W TP + Y + W
Sbjct: 117 LWVEW---TTPRESVKK----------------------YILEWCVLSDKAPCITDWQQE 151
Query: 370 PVRTKQYGKTPGFGEQAAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPI 429
TY L + Y I + G G+
Sbjct: 152 DGTVH----------------------RTYLRGNLAESKCYLITVTPVYADGPGSPE--- 186
Query: 430 PVRTKQYGKTPGFGEQALYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQ 489
I KQ P P V+
Sbjct: 187 -----------------------------------------SIKAYLKQAPPSKGP-TVR 204
Query: 490 VRPLSSSTMVIQWDEP--ETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLT-TISDL 546
+ + + V++WD+ + NG I Y ++Y VD++ T+S L
Sbjct: 205 TKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTII----GNETAVNVDSSHTEYTLSSL 260
Query: 547 TPHTIYTIRVQAFTSVGPGPLSAPVLVKT 575
T T+Y +R+ A+T G T
Sbjct: 261 TSDTLYMVRMAAYTDEGGKD-GPEFTFTT 288
Score = 75.2 bits (185), Expect = 8e-15
Identities = 26/210 (12%), Positives = 53/210 (25%), Gaps = 36/210 (17%)
Query: 715 VPGAPP----QNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVT 770
P P + ++++ W+ P +NG I+ Y++ ++
Sbjct: 3 RPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQNYTVNA 62
Query: 771 LKNQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDPSEVCPTQNDFRKNK 830
+ + L Y + +G ++ +TI + + P + K
Sbjct: 63 --TKLTVNLTN----DRYLATLTVRNLVGKSDAA-VLTIPACDFQATH--PVMDLKAFPK 113
Query: 831 KT---------NGSNFKGGYL--------NDPMRFD---VSDGGALELNVTGLQPDTIYT 870
S Y+ P D L Y
Sbjct: 114 DNMLWVEWTTPRESV--KKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAESKCYL 171
Query: 871 IQVAALTRKGDGDRSKPETIKTPGGVPNRP 900
I V + G G + P++
Sbjct: 172 ITVTPVYADGPGS-PESIKAYLKQAPPSKG 200
Score = 63.3 bits (154), Expect = 7e-11
Identities = 18/94 (19%), Positives = 29/94 (30%), Gaps = 6/94 (6%)
Query: 201 PVAPLDVKISEVTATSVRLDWTYPSET-----LLYYVIQYKPKAANTPYSEISGIITTYY 255
P V+ +V L+W + Y I Y+ N + T Y
Sbjct: 197 PSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGNETAVNVDSSHTEY- 255
Query: 256 TVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITT 289
T+ +L+ T Y + A + G T
Sbjct: 256 TLSSLTSDTLYMVRMAAYTDEGGKDGPEFTFTTP 289
Score = 33.6 bits (77), Expect = 0.26
Identities = 7/34 (20%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 35 TAPRDVQVRPLSSSTMVIQWDEP--ETPNGQITH 66
+ V+ + + + V++WD+ + NG I +
Sbjct: 198 SKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRN 231
Score = 33.6 bits (77), Expect = 0.27
Identities = 8/46 (17%), Positives = 14/46 (30%), Gaps = 1/46 (2%)
Query: 859 NVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKTPGGVPNRPHVNL 904
+T + Y + G D + TI P ++L
Sbjct: 64 KLTVNLTNDRYLATLTVRNLVGKSDAA-VLTIPACDFQATHPVMDL 108
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 187 bits (474), Expect = 6e-50
Identities = 78/609 (12%), Positives = 168/609 (27%), Gaps = 124/609 (20%)
Query: 168 SENYTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISEVTATSVRLDWTYPSE- 226
S C + + + +++ +E+ + + + W+
Sbjct: 135 SGVKKCCSNGCGHTCQVPKTLYKG-------VPLKPRKELRFTELQSGQLEVKWSSKFNI 187
Query: 227 --TLLYYVIQYKP-------KAANTPYSEISGIITTYYTVRNLSPYTEYEFYIIAVNNLG 277
+ YV+Q + + T + ++ + ++ P Y+F + AVN G
Sbjct: 188 SIEPVIYVVQRRWNYGIHPSEDDATHWQTVAQTTDERVQLTDIRPSRWYQFRVAAVNVHG 247
Query: 278 RGPPSSPAVITTGETEPGTAPRDVQVRPLSSS-------TMVIQWDEPETPNGQITAKHH 330
++P+ +P P +R +S+ T+ I WD PE P+ +
Sbjct: 248 TRGFTAPSKHFRSSKDPSAPPAPANLRLANSTVNSDGSVTVTIVWDLPEEPDIPVHH--- 304
Query: 331 RRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYGKTPGFGEQAAKHH 390
Y ++ + T +T +
Sbjct: 305 -------------------YKVFWSWMVSSKSLVPTKKKRRKTTDGFQN----------- 334
Query: 391 RRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYGKTPGFGEQALYPN 450
+ L L P+ Y + L A + G+ + + +
Sbjct: 335 -------SVILEKLQPDCDYVVELQAITYWGQT---RLKSAKVSLHFTSTHATNNKEQLV 384
Query: 451 TLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPNG 510
+ Q P T P+ V Y+ G + + W + +
Sbjct: 385 KTRKGGIQTQLPFQRRRPTRPLEVGAPFYQDG------------QLQVKVYWKKT--EDP 430
Query: 511 QITGYKVYY---TQDQSLPMSAWETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVGPGPL 567
+ Y V + + + + + + + DL+ Y + VQ
Sbjct: 431 TVNRYHVRWFPEACAHNRTTGSEASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSHSKA 490
Query: 568 SAPVLVKTQQGVPSQPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKPRDL 627
A + E L+ AKP +L
Sbjct: 491 EAVFFTTPPCSALKGKSHKPIGCLGEAGHVLSKVL-------------------AKPENL 531
Query: 628 RAVDIQE---TAVTLAWSKPTHSGENIIS-YELYWNDTYAKAKHHRRI-----------G 672
A I + +W + ++ +++ W + +++ +
Sbjct: 532 SASFIVQDVNITGHFSWKMAKANLYQPMTGFQVTWAEVTTESRQNSLPNSIISQSQILPS 591
Query: 673 LVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTS 732
++ L P+TLY + + +P GEG T RT + P +
Sbjct: 592 DHYVLTVPNLRPSTLYRLEVQVLTPGGEGPAT-IKTFRTPELPPSSAH-----RSHLKHR 645
Query: 733 IRISWEPPP 741
++P P
Sbjct: 646 HPHHYKPSP 654
Score = 181 bits (459), Expect = 5e-48
Identities = 73/425 (17%), Positives = 134/425 (31%), Gaps = 71/425 (16%)
Query: 447 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSS-------TMV 499
+ P+ Y +AA + G T P +P P +R +S+ T+
Sbjct: 230 IRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPSAPPAPANLRLANSTVNSDGSVTVT 289
Query: 500 IQWDEPETPNGQITGYKVYY----TQDQSLPMSAWETQVVDNNQLT-TISDLTPHTIYTI 554
I WD PE P+ + YKV++ + +P + D Q + + L P Y +
Sbjct: 290 IVWDLPEEPDIPVHHYKVFWSWMVSSKSLVPTKKKRRKTTDGFQNSVILEKLQPDCDYVV 349
Query: 555 RVQAFTSVGPGPLSAP--VLVKTQQGVPSQPRDLRAVDIQETAVTLAWSKPTHSGENIIS 612
+QA T G L + L T + L L + + + +
Sbjct: 350 ELQAITYWGQTRLKSAKVSLHFTSTHATNNKEQLVKTRKGGIQTQLPFQRRRPTRPLEVG 409
Query: 613 YELYWNDTYAKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIG 672
Y + + V + W K + Y + W
Sbjct: 410 APFYQD--------------GQLQVKVYWKKTEDPT--VNRYHVRWFPEACAHNRTTGSE 453
Query: 673 LVETYS------LTGLYPNTLYYIWLAAQSPRGEGA------TTPP---IPVRTKQYVPG 717
+ L L + Y + + P+ TTPP + ++ + +
Sbjct: 454 ASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSHSKAEAVFFTTPPCSALKGKSHKPIGC 513
Query: 718 ------------APPQNVSCEPL---SSTSIRISWEPPPVERSNGHIVYYKLQFVETGRS 762
A P+N+S + + + SW+ + +++ + E
Sbjct: 514 LGEAGHVLSKVLAKPENLSASFIVQDVNITGHFSWKMAK-ANLYQPMTGFQVTWAEVTTE 572
Query: 763 DSEASIVTLK---------NQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHE 813
+ S+ + + L+ T YR+ V T G+GP++ T RT E
Sbjct: 573 SRQNSLPNSIISQSQILPSDHYVLTVPNLRPSTLYRLEVQVLTPGGEGPAT-IKTFRTPE 631
Query: 814 DDPSE 818
PS
Sbjct: 632 LPPSS 636
Score = 141 bits (356), Expect = 6e-35
Identities = 49/391 (12%), Positives = 107/391 (27%), Gaps = 74/391 (18%)
Query: 473 PVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSL-----PM 527
P + P ++++ L S + ++W + + Y V + +
Sbjct: 152 PKTLYKGVPLKPRKELRFTELQSGQLEVKWSSKFNISIEPVIYVVQRRWNYGIHPSEDDA 211
Query: 528 SAWETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQ---GVPSQPR 584
+ W+T ++ ++D+ P Y RV A G +AP P P
Sbjct: 212 THWQTVAQTTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPSAPPAPA 271
Query: 585 DLRAVDIQ-----ETAVTLAWSKPTHSGENIISYELYWNDTYAKPRDLRAVDIQETAVTL 639
+LR + VT+ W P + Y+++W
Sbjct: 272 NLRLANSTVNSDGSVTVTIVWDLPEEPDIPVHHYKVFW---------------------- 309
Query: 640 AWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRG 699
S ++++ + T G + L L P+ Y + L A + G
Sbjct: 310 ---SWMVSSKSLVPTKKKRRKTTD--------GFQNSVILEKLQPDCDYVVELQAITYWG 358
Query: 700 EG----------------ATTPPIPVRTKQYVPGAPPQNVSCEPL------------SST 731
+ V+T++ P
Sbjct: 359 QTRLKSAKVSLHFTSTHATNNKEQLVKTRKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQL 418
Query: 732 SIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFVLDELKKWTEYRIW 791
+++ W+ N + V + + R+ + + ++ +L +L +Y++
Sbjct: 419 QVKVYWKKTEDPTVNRYHVRWFPEACAHNRTTGSEASSGMTHENYIILQDLSFSCKYKVT 478
Query: 792 VLAGTSIGDGPSSYPITIRTHEDDPSEVCPT 822
V +
Sbjct: 479 VQPIRPKSHSKAEAVFFTTPPCSALKGKSHK 509
Score = 116 bits (290), Expect = 8e-27
Identities = 53/345 (15%), Positives = 92/345 (26%), Gaps = 70/345 (20%)
Query: 624 PRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVET------- 676
++LR ++Q + + WS + + Y + Y +T
Sbjct: 164 RKELRFTELQSGQLEVKWSSKFNISIEPVIYVVQRRWNYGIHPSEDDATHWQTVAQTTDE 223
Query: 677 -YSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQ-------NVSCEPL 728
LT + P+ Y +AA + G T P P APP N +
Sbjct: 224 RVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPSAPPAPANLRLANSTVNSD 283
Query: 729 SSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEA------SIVTLKNQTSFVLDEL 782
S ++ I W+ P E + + +YK+ + S S T Q S +L++L
Sbjct: 284 GSVTVTIVWDLP--EEPDIPVHHYKVFWSWMVSSKSLVPTKKKRRKTTDGFQNSVILEKL 341
Query: 783 KKWTEYRIWVLAGTSIGDGP-SSYPITIRTHEDDPSEVCPTQNDFRKNKKTNGSNFK--- 838
+ +Y + + A T G S +++ + RK F+
Sbjct: 342 QPDCDYVVELQAITYWGQTRLKSAKVSLHFTSTHATNNKEQLVKTRKGGIQTQLPFQRRR 401
Query: 839 -----------------------------------------GGYLNDPMRFDVSDGGALE 857
N + S G E
Sbjct: 402 PTRPLEVGAPFYQDGQLQVKVYWKKTEDPTVNRYHVRWFPEACAHNRTTGSEASSGMTHE 461
Query: 858 LN--VTGLQPDTIYTIQVAALTRKGDGDRSKPETIKTPGGVPNRP 900
+ L Y + V + K P
Sbjct: 462 NYIILQDLSFSCKYKVTVQPIRPKSHSKAEAVFFTTPPCSALKGK 506
Score = 83.5 bits (205), Expect = 1e-16
Identities = 37/236 (15%), Positives = 63/236 (26%), Gaps = 43/236 (18%)
Query: 708 PVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQ------FVETGR 761
P + VP P + + L S + + W + V Y +Q +
Sbjct: 152 PKTLYKGVPLKPRKELRFTELQSGQLEVKWSSKF--NISIEPVIYVVQRRWNYGIHPSED 209
Query: 762 SDSEASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDPSEVCP 821
+ V L +++ Y+ V A G + P DPS P
Sbjct: 210 DATHWQTVAQTTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPS-APP 268
Query: 822 TQNDFRKNKKTNGSNFKG-----------------GYL--------------NDPMRFDV 850
+ R T S+ Y R
Sbjct: 269 APANLRLANSTVNSDGSVTVTIVWDLPEEPDIPVHHYKVFWSWMVSSKSLVPTKKKRRKT 328
Query: 851 SDGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKP---ETIKTPGGVPNRPHVN 903
+DG + + LQPD Y +++ A+T G + N+ +
Sbjct: 329 TDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSAKVSLHFTSTHATNNKEQLV 384
Score = 33.0 bits (74), Expect = 0.53
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 32 EPGTAPRDVQVRPLS-----SSTMVIQWDEPETPNGQITH 66
AP ++++ + S T+ I WD PE P+ + H
Sbjct: 265 SAPPAPANLRLANSTVNSDGSVTVTIVWDLPEEPDIPVHH 304
>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A
{Homo sapiens} PDB: 1fnh_A
Length = 290
Score = 176 bits (447), Expect = 2e-49
Identities = 66/347 (19%), Positives = 115/347 (33%), Gaps = 61/347 (17%)
Query: 465 EGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQS 524
+ + V + AP D++ ++ +++ QW P N Q+TGY+V T +
Sbjct: 5 HHHHSSGLEVLFQG-PAIPAPTDLKFTQVTPTSLSAQWTPP---NVQLTGYRVRVTPKEK 60
Query: 525 LPMSAWETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPSQPR 584
D++ +S L T Y + V A + V+ + S PR
Sbjct: 61 TGPMKEINLAPDSSS-VVVSGLMVATKYEVSVYALKDTLTSRPAQGVVTTLE--NVSPPR 117
Query: 585 DLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKPRDLRAVDIQETAVTLAWSKP 644
R D ET +T++W T E I +++ + R +
Sbjct: 118 RARVTDATETTITISWRTKT---ETITGFQVDAVPANGQTPIQRTIKPDVR--------- 165
Query: 645 THSGENIISYELYWNDTYAKAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATT 704
+Y++TGL P T Y I+L + +
Sbjct: 166 -------------------------------SYTITGLQPGTDYKIYLYTLNDNARSS-- 192
Query: 705 PPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDS 764
PV P N+ + S+ +SW+PP I Y +++ + G
Sbjct: 193 ---PVVIDASTAIDAPSNLRFLATTPNSLLVSWQPP-----RARITGYIIKYEKPGSPPR 244
Query: 765 EASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRT 811
E T + L+ TEY I+V+A + +T
Sbjct: 245 EVVPRPRPGVTEATITGLEPGTEYTIYVIALKNNQKSEPLI-GRKKT 290
Score = 151 bits (383), Expect = 6e-41
Identities = 71/369 (19%), Positives = 114/369 (30%), Gaps = 106/369 (28%)
Query: 199 TLPVAPLDVKISEVTATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEISGIIT-TYYTV 257
AP D+K ++VT TS+ WT P+ L Y ++ PK P EI+ + V
Sbjct: 19 PAIPAPTDLKFTQVTPTSLSAQWTPPNVQLTGYRVRVTPKEKTGPMKEINLAPDSSSVVV 78
Query: 258 RNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDE 317
L T+YE + A+ + P+ V T P PR +V + +T+ I W
Sbjct: 79 SGLMVATKYEVSVYALKDTLTSRPAQGVVTTLENVSP---PRRARVTDATETTITISWRT 135
Query: 318 PETPNGQITAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYG 377
IT + + + + T VR+
Sbjct: 136 K---TETITG----------------------FQVDAVPANGQTPIQRTIKPDVRS---- 166
Query: 378 KTPGFGEQAAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYG 437
Y++TGL P T Y I+L + +
Sbjct: 167 ---------------------YTITGLQPGTDYKIYLYTLNDNARSS------------- 192
Query: 438 KTPGFGEQALYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSST 497
PV AP +++ + ++
Sbjct: 193 -----------------------------------PVVIDASTAIDAPSNLRFLATTPNS 217
Query: 498 MVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLTTISDLTPHTIYTIRVQ 557
+++ W P +ITGY + Y + S P + TI+ L P T YTI V
Sbjct: 218 LLVSWQP---PRARITGYIIKYEKPGS-PPREVVPRPRPGVTEATITGLEPGTEYTIYVI 273
Query: 558 AFTSVGPGP 566
A +
Sbjct: 274 ALKNNQKSE 282
Score = 123 bits (310), Expect = 3e-31
Identities = 43/274 (15%), Positives = 82/274 (29%), Gaps = 29/274 (10%)
Query: 624 PRDLRAVDIQETAVTLAWSKPTHSGENIISYELYW--NDTYAKAKHHRRIGLVETYSLTG 681
P DL+ + T+++ W+ P + Y + + K + ++G
Sbjct: 24 PTDLKFTQVTPTSLSAQWTPP---NVQLTGYRVRVTPKEKTGPMKEINLAPDSSSVVVSG 80
Query: 682 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPP 741
L T Y + + A + +PP+ + T+I ISW
Sbjct: 81 LMVATKYEVSVYALKDTLTSRPAQGVVTTL---ENVSPPRRARVTDATETTITISWRTK- 136
Query: 742 VERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDG 801
I +++ V + + S+ + L+ T+Y+I++
Sbjct: 137 ----TETITGFQVDAVPANGQTPIQRTIK-PDVRSYTITGLQPGTDYKIYLYTLNDNARS 191
Query: 802 PSSYPITIRTHEDDPSEVCPTQNDFRKN------KKTNGS------NFKGGYLNDPMRFD 849
P+ I + N + ++
Sbjct: 192 S---PVVIDASTAIDAPSNLRFLATTPNSLLVSWQPPRARITGYIIKYEKPGSPPREVVP 248
Query: 850 VSDGGALELNVTGLQPDTIYTIQVAALTRKGDGD 883
G E +TGL+P T YTI V AL +
Sbjct: 249 RPRPGVTEATITGLEPGTEYTIYVIALKNNQKSE 282
Score = 118 bits (298), Expect = 1e-29
Identities = 41/256 (16%), Positives = 73/256 (28%), Gaps = 56/256 (21%)
Query: 447 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPE 506
L T Y + + A + E + PR +V + +T+ I W
Sbjct: 81 LMVATKYEVSVYALKDTLTSRPAQGVVTTL---ENVSPPRRARVTDATETTITISWRTK- 136
Query: 507 TPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQL-TTISDLTPHTIYTIRVQAFTSVGPG 565
ITG++V + + + TI+ L P T Y I +
Sbjct: 137 --TETITGFQVDAVPANG---QTPIQRTIKPDVRSYTITGLQPGTDYKIYLYTLNDNARS 191
Query: 566 PLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKPR 625
PV++ P +LR + ++ ++W P I Y + +
Sbjct: 192 S---PVVIDAST-AIDAPSNLRFLATTPNSLLVSWQPPRA---RITGYIIKYEKP----- 239
Query: 626 DLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVETYSLTGLYPN 685
+ + R V ++TGL P
Sbjct: 240 ----------------------------------GSPPREVVPRPRPGVTEATITGLEPG 265
Query: 686 TLYYIWLAAQSPRGEG 701
T Y I++ A +
Sbjct: 266 TEYTIYVIALKNNQKS 281
Score = 115 bits (290), Expect = 1e-28
Identities = 46/272 (16%), Positives = 90/272 (33%), Gaps = 38/272 (13%)
Query: 119 LDSPLNLSCVAVGSPMPFVKWRKGQN------IELTPDDK--------LPVGRNVLTLDR 164
+ +P +L V +W + +TP +K L + + +
Sbjct: 21 IPAPTDLKFTQVTPTSLSAQWTPPNVQLTGYRVRVTPKEKTGPMKEINLAPDSSSVVVSG 80
Query: 165 VTESENYTC--IAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISEVTATSVRLDWT 222
+ + Y A + V L P ++++ T T++ + W
Sbjct: 81 LMVATKYEVSVYALKDTLTSRPAQGVVTT------LENVSPPRRARVTDATETTITISWR 134
Query: 223 YPSETLLYYVIQYKPKAANTPYSEISGIITTYYTVRNLSPYTEYEFYIIAVNNLGRGPPS 282
+ET+ + + P TP YT+ L P T+Y+ Y+ +N+ R P
Sbjct: 135 TKTETITGFQVDAVPANGQTPIQRTIKPDVRSYTITGLQPGTDYKIYLYTLNDNARSSPV 194
Query: 283 SPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEPETP-----------NGQITAKHHR 331
T AP +++ + +++++ W P R
Sbjct: 195 V----IDASTAID-APSNLRFLATTPNSLLVSWQPPRARITGYIIKYEKPGSPPREVVPR 249
Query: 332 RIGLVETYSLTGLYPNTLYYIWLAAQSPRGEG 363
V ++TGL P T Y I++ A +
Sbjct: 250 PRPGVTEATITGLEPGTEYTIYVIALKNNQKS 281
Score = 97.2 bits (242), Expect = 3e-22
Identities = 31/213 (14%), Positives = 58/213 (27%), Gaps = 24/213 (11%)
Query: 700 EGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVET 759
+ + V + P ++ ++ TS+ W PP N + Y+++
Sbjct: 5 HHHHSSGLEVLFQG-PAIPAPTDLKFTQVTPTSLSAQWTPP-----NVQLTGYRVRVTPK 58
Query: 760 GRSDSEASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDPSEV 819
++ I + +S V+ L T+Y + V A + + P
Sbjct: 59 EKTGPMKEINLAPDSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQGVVTTLENVSP--- 115
Query: 820 CPTQNDFRKNKKTN--------GSNFKGGYL------NDPMRFDVSDGGALELNVTGLQP 865
P + +T G + +TGLQP
Sbjct: 116 -PRRARVTDATETTITISWRTKTETITGFQVDAVPANGQTPIQRTIKPDVRSYTITGLQP 174
Query: 866 DTIYTIQVAALTRKGDGDRSKPETIKTPGGVPN 898
T Y I + L + N
Sbjct: 175 GTDYKIYLYTLNDNARSSPVVIDASTAIDAPSN 207
Score = 79.8 bits (197), Expect = 2e-16
Identities = 44/294 (14%), Positives = 83/294 (28%), Gaps = 51/294 (17%)
Query: 28 ILVTEPGTAPRDVQVRPLSSSTMVIQWDEPETP-------------NGQITHPPTRAARS 74
+ AP D++ ++ +++ QW P G + S
Sbjct: 15 LFQGPAIPAPTDLKFTQVTPTSLSAQWTPPNVQLTGYRVRVTPKEKTGPMKEINLAPDSS 74
Query: 75 HARLAAQSVLRRGR------LAHAVRQVADPVRRVPPQFSIPPPALLEVMLDSPLNLSCV 128
++ L A + P + V P P
Sbjct: 75 SVVVSG---LMVATKYEVSVYALKDTLTSRPAQGVVTTLENVSP---------PRRARVT 122
Query: 129 AVGSPMPFVKWRKGQN------IELTPDD-------KLPVGRNVLTLDRVTESENYTCIA 175
+ WR ++ P + + T+ + +Y
Sbjct: 123 DATETTITISWRTKTETITGFQVDAVPANGQTPIQRTIKPDVRSYTITGLQPGTDYKIYL 182
Query: 176 ASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISEVTATSVRLDWTYPSETLLYYVIQY 235
++ +S +V T AP +++ T S+ + W P + Y+I+Y
Sbjct: 183 YTLNDNARSSPVVIDA------STAIDAPSNLRFLATTPNSLLVSWQPPRARITGYIIKY 236
Query: 236 KPKAANT-PYSEISGIITTYYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVIT 288
+ + T T+ L P TEY Y+IA+ N + P T
Sbjct: 237 EKPGSPPREVVPRPRPGVTEATITGLEPGTEYTIYVIALKNNQKSEPLIGRKKT 290
Score = 33.2 bits (76), Expect = 0.28
Identities = 9/46 (19%), Positives = 14/46 (30%), Gaps = 4/46 (8%)
Query: 21 PPLIPGYILVTEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITH 66
P + PR +V + +T+ I W IT
Sbjct: 101 RPAQGVVTTLENVS-PPRRARVTDATETTITISWRT---KTETITG 142
Score = 30.9 bits (70), Expect = 1.8
Identities = 8/42 (19%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 25 PGYILVTEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITH 66
P I + AP +++ + +++++ W P +IT
Sbjct: 193 PVVIDASTAIDAPSNLRFLATTPNSLLVSWQP---PRARITG 231
>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma,
epidermolysis bullosa, alternative splicing, disease
mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo
sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A
Length = 234
Score = 158 bits (402), Expect = 4e-44
Identities = 48/269 (17%), Positives = 93/269 (34%), Gaps = 47/269 (17%)
Query: 481 PGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQL 540
AP++ + S + W P +G+ GY+V Y S E ++D+
Sbjct: 5 DLGAPQNPNAKAAGSRKIHFNWLPP---SGKPMGYRVKYWIQGD---SESEAHLLDSKVP 58
Query: 541 T-TISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLA 599
+ +++L P+ Y ++V A+ + G GP S+ V +T Q VPS+P L + T L+
Sbjct: 59 SVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSEPGRLAFNVVSSTVTQLS 118
Query: 600 WSKPTHSGENIISYELYWNDTYAKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWN 659
W++P + I +YE+ + R + +
Sbjct: 119 WAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDN---------------------- 156
Query: 660 DTYAKAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEG-ATTPPIPVRTKQYVPGA 718
+ L + Y + A++ G G I + T+ P +
Sbjct: 157 ------------PKNRMLLIENLRESQPYRYTVKARNGAGWGPEREAIINLATQPKRPMS 204
Query: 719 PPQNVSCEPLSSTS-----IRISWEPPPV 742
P + + S + + +
Sbjct: 205 IPIIPDIPIVDAQSGEDYDSFLMYSDDVL 233
Score = 144 bits (365), Expect = 4e-39
Identities = 39/200 (19%), Positives = 65/200 (32%), Gaps = 20/200 (10%)
Query: 201 PVAPLDVKISEVTATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEISGIITTYYTVRNL 260
AP + + + +W PS + Y ++Y + + + + + NL
Sbjct: 6 LGAPQNPNAKAAGSRKIHFNWLPPSGKPMGYRVKYWIQGDSESEAHLLDSKVPSVELTNL 65
Query: 261 SPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEPET 320
PY +YE + A G GP SS T + P P + +SS+ + W EP
Sbjct: 66 YPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPS-EPGRLAFNVVSSTVTQLSWAEPAE 124
Query: 321 PNGQIT-------------------AKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRG 361
NG+IT K + L + Y + A++ G
Sbjct: 125 TNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYTVKARNGAG 184
Query: 362 EGATTPPIPVRTKQYGKTPG 381
G I Q +
Sbjct: 185 WGPEREAIINLATQPKRPMS 204
Score = 137 bits (347), Expect = 9e-37
Identities = 52/221 (23%), Positives = 89/221 (40%), Gaps = 14/221 (6%)
Query: 624 PRDLRAVDIQETAVTLAWSKPTHSGENIISYEL-YWNDTYAKAKHHRRIGLVETYSLTGL 682
P++ A + W P SG+ + Y + YW ++++ H V + LT L
Sbjct: 9 PQNPNAKAAGSRKIHFNWLPP--SGK-PMGYRVKYWIQGDSESEAHLLDSKVPSVELTNL 65
Query: 683 YPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPPV 742
YP Y + + A +GEG + + RT Q VP P ++ +SST ++SW P
Sbjct: 66 YPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSEPG-RLAFNVVSSTVTQLSWAEP-- 122
Query: 743 ERSNGHIVYYKLQFVETGRSDSEAS-----IVTLKNQTSFVLDELKKWTEYRIWVLAGTS 797
+NG I Y++ + + +V +++ L++ YR V A
Sbjct: 123 AETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYTVKARNG 182
Query: 798 IGDGPSSYP-ITIRTHEDDPSEVCPTQNDFRKNKKTNGSNF 837
G GP I + T P + P D +G ++
Sbjct: 183 AGWGPEREAIINLATQPKRPMSI-PIIPDIPIVDAQSGEDY 222
Score = 136 bits (343), Expect = 3e-36
Identities = 48/180 (26%), Positives = 76/180 (42%), Gaps = 16/180 (8%)
Query: 447 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPE 506
LYP Y + + A +GEG + + RT Q P P + +SS+ + W EP
Sbjct: 65 LYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPS-EPGRLAFNVVSSTVTQLSWAEPA 123
Query: 507 TPNGQITGYKVYY--TQDQSLPMSAWETQVVDNNQLT--TISDLTPHTIYTIRVQAFTSV 562
NG+IT Y+V Y D + P+ + +VDN + I +L Y V+A
Sbjct: 124 ETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYTVKARNGA 183
Query: 563 GPGPLSAPVL-VKTQQGVPSQPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTY 621
G GP ++ + TQ P + + I + SGE+ S+ +Y +D
Sbjct: 184 GWGPEREAIINLATQPKRPMSIPIIPDIPIVD----------AQSGEDYDSFLMYSDDVL 233
Score = 134 bits (338), Expect = 1e-35
Identities = 47/210 (22%), Positives = 78/210 (37%), Gaps = 32/210 (15%)
Query: 715 VPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQ 774
+ PQN + + S I +W PP +G + Y++++ G S+SEA ++
Sbjct: 4 MDLGAPQNPNAKAAGSRKIHFNWLPP-----SGKPMGYRVKYWIQGDSESEAHLLDS-KV 57
Query: 775 TSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDPSEVCPTQNDFRKN----- 829
S L L + +Y + V A + G+GP S ++ RTH++ PSE P + F
Sbjct: 58 PSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSE--PGRLAFNVVSSTVT 115
Query: 830 -------KKTNG-----------SNFKGGYLNDPMRFDVSDGGALELNVTGLQPDTIYTI 871
+TNG N + + V + L + L+ Y
Sbjct: 116 QLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRY 175
Query: 872 QVAALTRKGDGDRSKPE-TIKTPGGVPNRP 900
V A G G + + T P
Sbjct: 176 TVKARNGAGWGPEREAIINLATQPKRPMSI 205
Score = 84.1 bits (208), Expect = 2e-18
Identities = 22/133 (16%), Positives = 44/133 (33%), Gaps = 15/133 (11%)
Query: 201 PVAPLDVKISEVTATSVRLDWTYPSET---LLYYVIQYKPKAANTPYSE------ISGII 251
P P + + V++T +L W P+ET + Y + Y + +
Sbjct: 99 PSEPGRLAFNVVSSTVTQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPK 158
Query: 252 TTYYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAV-ITTGETEPGTAPRDVQVRPLSSS- 309
+ NL Y + + A N G GP + + T P + P + + +
Sbjct: 159 NRMLLIENLRESQPYRYTVKARNGAGWGPEREAIINLATQPKRPMSIPIIPDIPIVDAQS 218
Query: 310 ----TMVIQWDEP 318
+ + +
Sbjct: 219 GEDYDSFLMYSDD 231
Score = 83.7 bits (207), Expect = 4e-18
Identities = 35/249 (14%), Positives = 65/249 (26%), Gaps = 51/249 (20%)
Query: 290 GETEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQIT-------------AKHHRRIGLV 336
G AP++ + S + W P+G+ ++ H V
Sbjct: 1 GSHMDLGAPQNPNAKAAGSRKIHFNWLP---PSGKPMGYRVKYWIQGDSESEAHLLDSKV 57
Query: 337 ETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYGKTPGFGEQAAKHHRRIGLV 396
+ LT LYP Y + + A +GEG + + RT Q P
Sbjct: 58 PSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQE--VPSE-------------P 102
Query: 397 ETYSLTGLYPNTLYYIWLAAQSPRG----------EGATTPPIPVRTKQYGKTPGFGEQA 446
+ + W G K+
Sbjct: 103 GRLAFNVVSSTVTQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRML 162
Query: 447 ----LYPNTLYYIWLAAQSPRGEG-ATTPPIPVRTKQYEPGTAPRDVQVRPLSSS----- 496
L + Y + A++ G G I + T+ P + P + + +
Sbjct: 163 LIENLRESQPYRYTVKARNGAGWGPEREAIINLATQPKRPMSIPIIPDIPIVDAQSGEDY 222
Query: 497 TMVIQWDEP 505
+ + +
Sbjct: 223 DSFLMYSDD 231
Score = 43.2 bits (102), Expect = 2e-04
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 36 APRDVQVRPLSSSTMVIQWDEPETPNGQITH 66
P + +SS+ + W EP NG+IT
Sbjct: 101 EPGRLAFNVVSSTVTQLSWAEPAETNGEITA 131
Score = 34.4 bits (79), Expect = 0.10
Identities = 6/33 (18%), Positives = 12/33 (36%), Gaps = 3/33 (9%)
Query: 33 PGTAPRDVQVRPLSSSTMVIQWDEPETPNGQIT 65
AP++ + S + W P+G+
Sbjct: 5 DLGAPQNPNAKAAGSRKIHFNWLP---PSGKPM 34
>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain,
fibron type III, cell adhesion; 1.80A {Homo sapiens}
PDB: 1x5k_A
Length = 211
Score = 153 bits (389), Expect = 1e-42
Identities = 46/200 (23%), Positives = 78/200 (39%), Gaps = 25/200 (12%)
Query: 201 PVAPLDVKISEVTATSVRLDWTYPSET-------LLYYVIQYKPKAANTPYSEISGIITT 253
+ P+ V+ S ++ ++R+ W S YY +++K + + T
Sbjct: 5 MMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTL 64
Query: 254 YYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRP--LSSSTM 311
Y V L P T YEF ++ S A TT E P + P+DV V T+
Sbjct: 65 SYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVVSKEGKPKTI 124
Query: 312 VIQWDEPETPNGQIT----------------AKHHRRIGLVETYSLTGLYPNTLYYIWLA 355
++ W P NG+IT +G T+ + L +T YY +
Sbjct: 125 IVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTLDTPYYFKIQ 184
Query: 356 AQSPRGEGATTPPIPVRTKQ 375
A++ +G G + + RT +
Sbjct: 185 ARNSKGMGPMSEAVQFRTPK 204
Score = 140 bits (355), Expect = 4e-38
Identities = 43/202 (21%), Positives = 80/202 (39%), Gaps = 11/202 (5%)
Query: 624 PRDLRAVDIQETAVTLAWSKPTHSGENIIS----YELYWNDTYAKAKHHRRIGLVET-YS 678
P ++A + + + W+ + I+ Y + W ++ Y
Sbjct: 8 PVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTLSYL 67
Query: 679 LTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQNVSCEP--LSSTSIRIS 736
+TGL PNTLY + R + T + VP +PP++V+ +I ++
Sbjct: 68 VTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVVSKEGKPKTIIVN 127
Query: 737 WEPPPVERSNGHIVYYKLQFVETGRSDSEASIV--TLKNQTSFVLDELKKWTEYRIWVLA 794
W+PP +NG I Y + + ++ ++ + N+ + + EL T Y + A
Sbjct: 128 WQPP--SEANGKITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTLDTPYYFKIQA 185
Query: 795 GTSIGDGPSSYPITIRTHEDDP 816
S G GP S + RT +
Sbjct: 186 RNSKGMGPMSEAVQFRTPKAHH 207
Score = 140 bits (354), Expect = 5e-38
Identities = 44/137 (32%), Positives = 65/137 (47%), Gaps = 3/137 (2%)
Query: 447 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRP--LSSSTMVIQWDE 504
L PNTLY + R + T + P + P+DV V T+++ W
Sbjct: 71 LKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVVSKEGKPKTIIVNWQP 130
Query: 505 PETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLT-TISDLTPHTIYTIRVQAFTSVG 563
P NG+ITGY +YY+ D + + W + V N+LT I +LT T Y ++QA S G
Sbjct: 131 PSEANGKITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTLDTPYYFKIQARNSKG 190
Query: 564 PGPLSAPVLVKTQQGVP 580
GP+S V +T +
Sbjct: 191 MGPMSEAVQFRTPKAHH 207
Score = 139 bits (351), Expect = 1e-37
Identities = 39/250 (15%), Positives = 78/250 (31%), Gaps = 52/250 (20%)
Query: 481 PGTAPRDVQVRPLSSSTMVIQWDEPETP----NGQITGYKVYYTQDQSLPMSAWETQVVD 536
P P VQ LS T+ I W + P Y V + + + + + +
Sbjct: 4 PMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIP---ANTKYKNAN 60
Query: 537 NNQLT-TISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPSQPR---DLRAVDIQ 592
L+ ++ L P+T+Y V S T + VP+ P + + + +
Sbjct: 61 ATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVVSKEGK 120
Query: 593 ETAVTLAWSKPTHSGENIISYELYWNDTYAKPRDLRAVDIQETAVTLAWSKPTHSGENII 652
+ + W P+ + I Y +Y++ ++
Sbjct: 121 PKTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPVVGNRL-------------- 166
Query: 653 SYELYWNDTYAKAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTK 712
T+ + L +T YY + A++ +G G + + RT
Sbjct: 167 -----------------------THQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRTP 203
Query: 713 QYVPGAPPQN 722
+ A +
Sbjct: 204 K----AHHHH 209
Score = 132 bits (333), Expect = 3e-35
Identities = 40/211 (18%), Positives = 65/211 (30%), Gaps = 26/211 (12%)
Query: 715 VPGAPPQNVSCEPLSSTSIRISWEPP--PVERSNGHIVYYKLQFVETGRSDSEASIVTLK 772
+P PP V LS +IRI+W P + YY +++ ++++
Sbjct: 3 LPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNAN-A 61
Query: 773 NQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDPSEVCPTQNDFRKN--- 829
S+++ LK T Y V+ S T E P+ P
Sbjct: 62 TTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELVPTSP-PKDVTVVSKEGK 120
Query: 830 -----------KKTNGS--------NFKGGYLNDPMRFDVSDGGALELNVTGLQPDTIYT 870
+ NG + + G L + L DT Y
Sbjct: 121 PKTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTLDTPYY 180
Query: 871 IQVAALTRKGDGDRSKPETIKTPGGVPNRPH 901
++ A KG G S+ +TP + H
Sbjct: 181 FKIQARNSKGMGPMSEAVQFRTPKAHHHHHH 211
Score = 71.8 bits (176), Expect = 3e-14
Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 6/102 (5%)
Query: 201 PVAPLDVKISEVTATSVRLDWTYPSET---LLYYVIQYKPKAANTPYSEISGII---TTY 254
P + V E ++ ++W PSE + Y+I Y + + +
Sbjct: 108 PPKDVTVVSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPVVGNRLT 167
Query: 255 YTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGT 296
+ ++ L+ T Y F I A N+ G GP S T +
Sbjct: 168 HQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRTPKAHHHH 209
Score = 40.6 bits (95), Expect = 0.001
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 32 EPGTAPRDVQVRP--LSSSTMVIQWDEPETPNGQITH 66
P + P+DV V T+++ W P NG+IT
Sbjct: 104 VPTSPPKDVTVVSKEGKPKTIIVNWQPPSEANGKITG 140
Score = 37.1 bits (86), Expect = 0.015
Identities = 11/37 (29%), Positives = 13/37 (35%)
Query: 33 PGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITHPPT 69
P P VQ LS T+ I W + P Q
Sbjct: 4 PMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSR 40
>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins,
protein-protein interactions, C-type lectin domain;
2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
Length = 283
Score = 155 bits (394), Expect = 2e-42
Identities = 54/342 (15%), Positives = 101/342 (29%), Gaps = 61/342 (17%)
Query: 470 PPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSA 529
P I P + VR +S + ++W P ++ + Y
Sbjct: 3 PGISGGGGGIPVIDGPTQILVRDVSDTVAFVEWT---PPRAKVDFILLKYGLVGGEGGKT 59
Query: 530 WETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPSQPRDLRAV 589
+Q ++ L P + Y + + A S+ P++LR
Sbjct: 60 TFRLQPPLSQ-YSVQALRPGSRYEVSISAVRGTNESDASSTQFTT----EIDAPKNLRVG 114
Query: 590 DIQETAVTLAWSKPTHSGENIISYELYWNDTYAKPRDLRAVDIQETAVTLAWSKPTHSGE 649
T++ L W Y++ ++ + V T
Sbjct: 115 SRTATSLDLEWDNSEA---EAQEYKVVYSTLAGEQYHEVLVPKGIGPTT----------- 160
Query: 650 NIISYELYWNDTYAKAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPV 709
+LT L P T Y + ++A + P
Sbjct: 161 --------------------------KTTLTDLVPGTEYGVGISAVMNSKQSI-----PA 189
Query: 710 RTKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIV 769
P+++ S TSI + W +G I +Y++ F + SE ++
Sbjct: 190 TMNARTELDSPRDLMVTASSETSISLIWTKA-----SGPIDHYRITFTPSSGISSEVTVP 244
Query: 770 TLKNQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRT 811
++TS+ L +L+ EY I + A S + T
Sbjct: 245 R--DRTSYTLTDLEPGAEYIISITAERGRQQSLEST-VDAFT 283
Score = 152 bits (385), Expect = 2e-41
Identities = 58/370 (15%), Positives = 112/370 (30%), Gaps = 107/370 (28%)
Query: 198 LTLPVAPLDVKISEVTATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEIS-GIITTYYT 256
+ + P + + +V+ T ++WT P + + +++Y + + Y+
Sbjct: 12 IPVIDGPTQILVRDVSDTVAFVEWTPPRAKVDFILLKYGLVGGEGGKTTFRLQPPLSQYS 71
Query: 257 VRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWD 316
V+ L P + YE I AV SS T AP++++V +++++ ++WD
Sbjct: 72 VQALRPGSRYEVSISAVRGTNESDASSTQFTT-----EIDAPKNLRVGSRTATSLDLEWD 126
Query: 317 EPETPNGQITAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQY 376
+ Y + Y
Sbjct: 127 NS---EAEAQE----------------------YKV----------------------VY 139
Query: 377 GKTPGFGEQAAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQY 436
G + IG +LT L P T Y + ++A + P +
Sbjct: 140 STLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQS---IPATMN---- 192
Query: 437 GKTPGFGEQALYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSS 496
A T +PRD+ V S +
Sbjct: 193 ------------------------------ARTEL-----------DSPRDLMVTASSET 211
Query: 497 TMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLTTISDLTPHTIYTIRV 556
++ + W + +G I Y++ +T + E V + T++DL P Y I +
Sbjct: 212 SISLIWTK---ASGPIDHYRITFTPSSG---ISSEVTVPRDRTSYTLTDLEPGAEYIISI 265
Query: 557 QAFTSVGPGP 566
A
Sbjct: 266 TAERGRQQSL 275
Score = 130 bits (329), Expect = 8e-34
Identities = 63/424 (14%), Positives = 116/424 (27%), Gaps = 150/424 (35%)
Query: 283 SPAVITTGETEPG-TAPRDVQVRPLSSSTMVIQWDEPETPNGQITAKHHRRIGLVETYSL 341
SP + G P P + VR +S + ++W P I
Sbjct: 2 SPGISGGGGGIPVIDGPTQILVRDVSDTVAFVEWTPPRAKVDFIL--------------- 46
Query: 342 TGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYGKTPGFGEQAAKHHRRIGLVETYSL 401
L Y + + + PP + YS+
Sbjct: 47 -------LKYGLVGGEGGKTTFRLQPP---------------------------LSQYSV 72
Query: 402 TGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYGKTPGFGEQALYPNTLYYIWLAAQS 461
L P + Y + ++A E +
Sbjct: 73 QALRPGSRYEVSISAVRGTNESDASSTQ-------------------------------- 100
Query: 462 PRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQ 521
TT AP++++V +++++ ++WD + YKV Y+
Sbjct: 101 -----FTTEI-----------DAPKNLRVGSRTATSLDLEWDN---SEAEAQEYKVVYST 141
Query: 522 DQSLPM-SAWETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVP 580
+ + TT++DL P T Y + + A + A + +T
Sbjct: 142 LAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQSI-PATMNART---EL 197
Query: 581 SQPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKPRDLRAVDIQETAVTLA 640
PRDL ET+++L W+K +
Sbjct: 198 DSPRDLMVTASSETSISLIWTKASG----------------------------------- 222
Query: 641 WSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGE 700
I Y + + + + +Y+LT L P Y I + A+ R +
Sbjct: 223 ---------PIDHYRITFTPSSGISSEVTVPRDRTSYTLTDLEPGAEYIISITAERGRQQ 273
Query: 701 GATT 704
+
Sbjct: 274 SLES 277
Score = 117 bits (296), Expect = 2e-29
Identities = 43/281 (15%), Positives = 79/281 (28%), Gaps = 40/281 (14%)
Query: 624 PRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVET--YSLTG 681
P + D+ +T + W+ P + L + + YS+
Sbjct: 18 PTQILVRDVSDTVAFVEWTPPR---AKVDFILLKYGLVGGEGGKTTFRLQPPLSQYSVQA 74
Query: 682 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPP 741
L P + Y + ++A E T+ P+N+ ++TS+ + W+
Sbjct: 75 LRPGSRYEVSISAVRGTNESD-----ASSTQFTTEIDAPKNLRVGSRTATSLDLEWDNSE 129
Query: 742 VERSNGHIVYYKLQFVETGRSDSEASIVTLK--NQTSFVLDELKKWTEYRIWVLAGTSIG 799
YK+ + +V T L +L TEY + + A +
Sbjct: 130 -----AEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVMNSK 184
Query: 800 DGPSSYPITIRTHEDDPSEVCPTQNDFRKNKKTNGS---------NFKGGYL------ND 844
+ + RT D P D + S Y +
Sbjct: 185 QSIPA-TMNARTELDSPR-------DLMVTASSETSISLIWTKASGPIDHYRITFTPSSG 236
Query: 845 PMRFDVSDGGALELNVTGLQPDTIYTIQVAALTRKGDGDRS 885
+T L+P Y I + A + S
Sbjct: 237 ISSEVTVPRDRTSYTLTDLEPGAEYIISITAERGRQQSLES 277
Score = 106 bits (266), Expect = 2e-25
Identities = 44/183 (24%), Positives = 73/183 (39%), Gaps = 23/183 (12%)
Query: 199 TLPVAPLDVKISEVTATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEISGII---TTYY 255
T AP ++++ TATS+ L+W Y + Y A + + TT
Sbjct: 103 TEIDAPKNLRVGSRTATSLDLEWDNSEAEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKT 162
Query: 256 TVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQW 315
T+ +L P TEY I AV N + P++ TE +PRD+ V S +++ + W
Sbjct: 163 TLTDLVPGTEYGVGISAVMNSKQSIPAT----MNARTELD-SPRDLMVTASSETSISLIW 217
Query: 316 DEPETPNGQIT------------AKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEG 363
+ +G I + +Y+LT L P Y I + A+ R +
Sbjct: 218 TKA---SGPIDHYRITFTPSSGISSEVTVPRDRTSYTLTDLEPGAEYIISITAERGRQQS 274
Query: 364 ATT 366
+
Sbjct: 275 LES 277
Score = 82.5 bits (204), Expect = 2e-17
Identities = 28/206 (13%), Positives = 58/206 (28%), Gaps = 18/206 (8%)
Query: 705 PPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDS 764
P I P + +S T + W PP + + L++ G
Sbjct: 3 PGISGGGGGIPVIDGPTQILVRDVSDTVAFVEWTPPR-----AKVDFILLKYGLVGGEGG 57
Query: 765 EASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDPSEVC---P 821
+ + + + + L+ + Y + + A + +S T D P +
Sbjct: 58 KTTFRLQPPLSQYSVQALRPGSRYEVSISAVRGTNESDAS-STQFTTEIDAPKNLRVGSR 116
Query: 822 TQNDFR---KNKKTNGSNFK------GGYLNDPMRFDVSDGGALELNVTGLQPDTIYTIQ 872
T N + +K G + G + +T L P T Y +
Sbjct: 117 TATSLDLEWDNSEAEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVG 176
Query: 873 VAALTRKGDGDRSKPETIKTPGGVPN 898
++A+ + +
Sbjct: 177 ISAVMNSKQSIPATMNARTELDSPRD 202
Score = 75.6 bits (186), Expect = 5e-15
Identities = 47/289 (16%), Positives = 87/289 (30%), Gaps = 47/289 (16%)
Query: 30 VTEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQ--ITHPPTRAARSHARLAAQSVLRRG 87
+ P + VR +S + ++W P + + Q L +
Sbjct: 12 IPVID-GPTQILVRDVSDTVAFVEWTPPRAKVDFILLKYGLVGGEGGKTTFRLQPPLSQY 70
Query: 88 RLAH------------AVRQVADPVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMP 135
+ AVR + QF+ A P NL + +
Sbjct: 71 SVQALRPGSRYEVSISAVRGT-NESDASSTQFTTEIDA--------PKNLRVGSRTATSL 121
Query: 136 FVKWR----------------KGQNIELTPDDKLPVGRNVLTLDRVTESENYTCIAASVL 179
++W G+ K TL + Y ++V+
Sbjct: 122 DLEWDNSEAEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVM 181
Query: 180 GVIETSTIVKVQCKYAPLLTLPVAPLDVKISEVTATSVRLDWTYPSETLLYYVIQYKPKA 239
++ T +P D+ ++ + TS+ L WT S + +Y I + P +
Sbjct: 182 NSKQSIPATMNAR------TELDSPRDLMVTASSETSISLIWTKASGPIDHYRITFTPSS 235
Query: 240 ANTPYSEISGIITTYYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVIT 288
+ + T+Y T+ +L P EY I A + S+ T
Sbjct: 236 GISSEVTVPRDRTSY-TLTDLEPGAEYIISITAERGRQQSLESTVDAFT 283
Score = 32.1 bits (73), Expect = 0.68
Identities = 6/42 (14%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 25 PGYILVTEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITH 66
T AP++++V +++++ ++WD +
Sbjct: 96 ASSTQFTTEIDAPKNLRVGSRTATSLDLEWDN---SEAEAQE 134
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 152 bits (385), Expect = 4e-41
Identities = 51/220 (23%), Positives = 87/220 (39%), Gaps = 20/220 (9%)
Query: 95 QVADPVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRK-GQNIELTPDDKL 153
+V P + P+ + + + +++ G P P + W+K I+ ++
Sbjct: 95 EVEVPAKIHLPKT-LEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQV 153
Query: 154 PVGRNVLTLDRVTESE-----NYTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVK 208
V R+ +L E Y A + G+ + + + V +P P VK
Sbjct: 154 IVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA-------DVPDPPRGVK 206
Query: 209 ISEVTATSVRLDWTYPSET----LLYYVIQYKPKAANTPYSEISGIITTYYTVRNLSPYT 264
+S+V+ SV L WT P+ + Y+++ A + + T YTV NL T
Sbjct: 207 VSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAER-WLRVGQARETRYTVINLFGKT 265
Query: 265 EYEFYIIAVNNLGRGPPSSP-AVITTGETEPGTAPRDVQV 303
Y+F +IA N G PS P T E + D +V
Sbjct: 266 SYQFRVIAENKFGLSKPSEPSEPTITKEDKTRAMNYDEEV 305
Score = 67.9 bits (166), Expect = 3e-12
Identities = 56/303 (18%), Positives = 97/303 (32%), Gaps = 44/303 (14%)
Query: 103 VPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDK------LPVG 156
+ P F L V S L C G P P VKW + E+ D G
Sbjct: 3 MAPHFKEEL-RNLNVRYQSNATLVCKVTGHPKPIVKWYRQGK-EIIADGLKYRIQEFKGG 60
Query: 157 RNVLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISEVTA 214
+ L + VT+ + Y A + G + + ++V + + LP +
Sbjct: 61 YHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEV--EVPAKIHLPKTLEGMGAVHALR 118
Query: 215 -TSVRLDWT---YPSETLLYY----VIQYKPKAANTPYSEISGIITTYYTVRNLS-PYTE 265
V + P + + +I + ++ R + Y
Sbjct: 119 GEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYV- 177
Query: 266 YEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEPETPNG-- 323
+ A N G + + PR V+V +S ++ + W EP + G
Sbjct: 178 ----VCAKNRFG----IDQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSK 229
Query: 324 ---------QITAKHHRRIGLV--ETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPI-PV 371
TA+ R+G Y++ L+ T Y + A++ G + P P
Sbjct: 230 ITNYIVEKCATTAERWLRVGQARETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPSEPT 289
Query: 372 RTK 374
TK
Sbjct: 290 ITK 292
Score = 62.1 bits (151), Expect = 2e-10
Identities = 29/126 (23%), Positives = 44/126 (34%), Gaps = 8/126 (6%)
Query: 459 AQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQ-ITGYKV 517
A++ G T + V P PR V+V +S ++ + W EP + G IT Y V
Sbjct: 180 AKNRFGIDQKTVELDVADV---PD-PPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIV 235
Query: 518 YYTQDQSLPMSAWETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQ 577
+ W T+ +L T Y RV A G S P +
Sbjct: 236 EK---CATTAERWLRVGQARETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPSEPTITK 292
Query: 578 GVPSQP 583
++
Sbjct: 293 EDKTRA 298
Score = 62.1 bits (151), Expect = 2e-10
Identities = 25/113 (22%), Positives = 42/113 (37%), Gaps = 8/113 (7%)
Query: 715 VPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGH--IVYYKLQFVETGRSDSEASIVTLK 772
VP PP+ V +S S+ ++W P S+G I Y ++ T V
Sbjct: 198 VPD-PPRGVKVSDVSRDSVNLTWTEP---ASDGGSKITNYIVEKCATTAERWLR--VGQA 251
Query: 773 NQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDPSEVCPTQND 825
+T + + L T Y+ V+A G S P ++D + +
Sbjct: 252 RETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPSEPTITKEDKTRAMNYDEE 304
Score = 50.5 bits (121), Expect = 1e-06
Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 2/102 (1%)
Query: 624 PRDLRAVDIQETAVTLAWSKP-THSGENIISYELYWNDTYAKAKHHRRIGLVETYSLTGL 682
PR ++ D+ +V L W++P + G I +Y + T A+ Y++ L
Sbjct: 202 PRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAERWLRVGQARETRYTVINL 261
Query: 683 YPNTLYYIWLAAQSPRGEGATTPPI-PVRTKQYVPGAPPQNV 723
+ T Y + A++ G + P P TK+ A +
Sbjct: 262 FGKTSYQFRVIAENKFGLSKPSEPSEPTITKEDKTRAMNYDE 303
Score = 35.5 bits (82), Expect = 0.057
Identities = 12/57 (21%), Positives = 17/57 (29%), Gaps = 1/57 (1%)
Query: 848 FDVSDGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKP-ETIKTPGGVPNRPHVN 903
V V L T Y +V A + G S+P E T + +
Sbjct: 246 LRVGQARETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPSEPTITKEDKTRAMNYD 302
Score = 29.0 bits (65), Expect = 7.3
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 27 YILVTEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQ-ITH 66
+ V + PR V+V +S ++ + W EP + G IT+
Sbjct: 192 ELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITN 232
>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine
phosphatase delta, R-PTP-delta, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 121
Score = 141 bits (357), Expect = 2e-39
Identities = 55/117 (47%), Positives = 79/117 (67%)
Query: 464 GEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQ 523
G ++ P+ +T + P +APRDVQ R LSS+T+++QW EPE PNGQI GY+VYYT D
Sbjct: 1 GSSGSSGPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEPEEPNGQIQGYRVYYTMDP 60
Query: 524 SLPMSAWETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVP 580
+ ++ W V ++Q+TTI +L P Y+++V AFTS+G GPLS+ + V TQ G
Sbjct: 61 TQHVNNWMKHNVADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVITQTGSG 117
Score = 114 bits (287), Expect = 4e-30
Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 3/119 (2%)
Query: 699 GEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVE 758
G ++ P+ +T + P + P++V LSST+I + W+ P E NG I Y++ +
Sbjct: 1 GSSGSSGPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEP--EEPNGQIQGYRVYYTM 58
Query: 759 TG-RSDSEASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDP 816
+ + + + + L Y + VLA TSIGDGP S I + T
Sbjct: 59 DPTQHVNNWMKHNVADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVITQTGSG 117
Score = 96.3 bits (240), Expect = 7e-24
Identities = 36/114 (31%), Positives = 52/114 (45%), Gaps = 15/114 (13%)
Query: 277 GRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQIT---------- 326
G S P + T E P +APRDVQ R LSS+T+++QW EPE PNGQI
Sbjct: 1 GSSGSSGPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEPEEPNGQIQGYRVYYTMDP 60
Query: 327 -----AKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQ 375
+ + ++ L P Y + + A + G+G + I V T+
Sbjct: 61 TQHVNNWMKHNVADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVITQT 114
Score = 72.1 bits (177), Expect = 2e-15
Identities = 27/157 (17%), Positives = 48/157 (30%), Gaps = 43/157 (27%)
Query: 563 GPGPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYA 622
G S PVL +T + PS
Sbjct: 1 GSSGSSGPVLTQTSEQAPSSA--------------------------------------- 21
Query: 623 KPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYW---NDTYAKAKHHRRIGLVETYSL 679
PRD++A + T + + W +P I Y +Y+ + + + ++
Sbjct: 22 -PRDVQARMLSSTTILVQWKEPEEPNGQIQGYRVYYTMDPTQHVNNWMKHNVADSQITTI 80
Query: 680 TGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVP 716
L P Y + + A + G+G + I V T+
Sbjct: 81 GNLVPQKTYSVKVLAFTSIGDGPLSSDIQVITQTGSG 117
Score = 68.6 bits (168), Expect = 5e-14
Identities = 22/100 (22%), Positives = 42/100 (42%), Gaps = 5/100 (5%)
Query: 203 APLDVKISEVTATSVRLDWTYPSET---LLYYVIQYKPKAANTPYSEISGIIT--TYYTV 257
AP DV+ +++T++ + W P E + Y + Y + + + T+
Sbjct: 21 APRDVQARMLSSTTILVQWKEPEEPNGQIQGYRVYYTMDPTQHVNNWMKHNVADSQITTI 80
Query: 258 RNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTA 297
NL P Y ++A ++G GP SS + T ++
Sbjct: 81 GNLVPQKTYSVKVLAFTSIGDGPLSSDIQVITQTGSGPSS 120
Score = 57.4 bits (139), Expect = 3e-10
Identities = 27/118 (22%), Positives = 41/118 (34%), Gaps = 20/118 (16%)
Query: 799 GDGPSSYPITIRTHEDDPSEVCPTQNDFRKN------------KKTNG--SNFKGGYLND 844
G SS P+ +T E PS P R ++ NG ++ Y D
Sbjct: 1 GSSGSSGPVLTQTSEQAPSSA-PRDVQARMLSSTTILVQWKEPEEPNGQIQGYRVYYTMD 59
Query: 845 PMRFD-----VSDGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKTPGGVP 897
P + + + + L P Y+++V A T GDG S + T G
Sbjct: 60 PTQHVNNWMKHNVADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVITQTGSG 117
Score = 51.3 bits (123), Expect = 5e-08
Identities = 22/48 (45%), Positives = 28/48 (58%)
Query: 19 PLPPLIPGYILVTEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITH 66
+ P +APRDVQ R LSS+T+++QW EPE PNGQI
Sbjct: 4 GSSGPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEPEEPNGQIQG 51
Score = 34.3 bits (79), Expect = 0.035
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 447 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTA 484
L P Y + + A + G+G + I V T+ ++
Sbjct: 83 LVPQKTYSVKVLAFTSIGDGPLSSDIQVITQTGSGPSS 120
>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 124
Score = 141 bits (357), Expect = 2e-39
Identities = 45/122 (36%), Positives = 64/122 (52%), Gaps = 2/122 (1%)
Query: 693 AAQSPRGEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYY 752
++ + G G +T I V T VP APPQNVS E ++S SI++SW PPP NG I Y
Sbjct: 5 SSGNRYGPGVSTDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFITGY 64
Query: 753 KLQFVETGRSDSEASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTH 812
K++ +T R ++ N ++ L+K ++Y V A T G GP S T T
Sbjct: 65 KIRHRKTTRRGEMETLEP--NNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNWYTAETP 122
Query: 813 ED 814
E+
Sbjct: 123 EN 124
Score = 120 bits (303), Expect = 3e-32
Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 7/123 (5%)
Query: 458 AAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEP--ETPNGQITGY 515
++ + G G +T I V T P P++V + ++S ++ + W P T NG ITGY
Sbjct: 5 SSGNRYGPGVSTDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFITGY 64
Query: 516 KVYYTQDQSLPMSAWETQVVDNNQLT-TISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVK 574
K+ + + E + ++ N L + L + Y+ +V A T G GP S +
Sbjct: 65 KIRHRKTTRR----GEMETLEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNWYTAE 120
Query: 575 TQQ 577
T +
Sbjct: 121 TPE 123
Score = 95.5 bits (238), Expect = 2e-23
Identities = 24/118 (20%), Positives = 42/118 (35%), Gaps = 14/118 (11%)
Query: 272 AVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEP--ETPNGQIT--- 326
+ N G G + + T P P++V + ++S ++ + W P T NG IT
Sbjct: 6 SGNRYGPGVSTDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFITGYK 65
Query: 327 ---------AKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQ 375
+ Y TGL + Y ++A + G G + T +
Sbjct: 66 IRHRKTTRRGEMETLEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNWYTAETPE 123
Score = 82.4 bits (204), Expect = 8e-19
Identities = 25/162 (15%), Positives = 47/162 (29%), Gaps = 42/162 (25%)
Query: 554 IRVQAFTSVGPGPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLAWSKPTHSGENIISY 613
+ GPG + + V T VPS P
Sbjct: 2 SSGSSGNRYGPGVSTDDITVVTLSDVPSAP------------------------------ 31
Query: 614 ELYWNDTYAKPRDLRAVDIQETAVTLAWSKPTHSGEN--IISYELYWNDTYAKAKHHRRI 671
P+++ + ++ ++W P +N I Y++ T + +
Sbjct: 32 ----------PQNVSLEVVNSRSIKVSWLPPPSGTQNGFITGYKIRHRKTTRRGEMETLE 81
Query: 672 GLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQ 713
Y TGL + Y ++A + G G + T +
Sbjct: 82 PNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNWYTAETPE 123
Score = 68.9 bits (169), Expect = 4e-14
Identities = 20/95 (21%), Positives = 37/95 (38%), Gaps = 6/95 (6%)
Query: 202 VAPLDVKISEVTATSVRLDWTYPSET-----LLYYVIQYKPKAANTPYSEISGIITTYYT 256
P +V + V + S+++ W P + Y I+++ + +Y
Sbjct: 30 APPQNVSLEVVNSRSIKVSWLPPPSGTQNGFITGYKIRHRKTTRRGEMETLEPN-NLWYL 88
Query: 257 VRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGE 291
L ++Y F + A+ G GPPS+ T E
Sbjct: 89 FTGLEKGSQYSFQVSAMTVNGTGPPSNWYTAETPE 123
Score = 61.9 bits (151), Expect = 9e-12
Identities = 30/122 (24%), Positives = 42/122 (34%), Gaps = 23/122 (18%)
Query: 792 VLAGTSIGDGPSSYPITIRTHEDDPSEVCPTQNDFRK--------------NKKTNGSNF 837
+G G G S+ IT+ T D PS P + NG
Sbjct: 4 GSSGNRYGPGVSTDDITVVTLSDVPSAP-PQNVSLEVVNSRSIKVSWLPPPSGTQNGFI- 61
Query: 838 KGGY------LNDPMRFDVSDGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIK 891
GY + + L TGL+ + Y+ QV+A+T G G S T +
Sbjct: 62 -TGYKIRHRKTTRRGEMETLEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNWYTAE 120
Query: 892 TP 893
TP
Sbjct: 121 TP 122
Score = 42.3 bits (100), Expect = 6e-05
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 19 PLPPLIPGYILVTEPGTAPRDVQVRPLSSSTMVIQWDEP--ETPNGQITH 66
I L P P++V + ++S ++ + W P T NG IT
Sbjct: 14 VSTDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFITG 63
Score = 34.2 bits (79), Expect = 0.042
Identities = 14/69 (20%), Positives = 22/69 (31%), Gaps = 9/69 (13%)
Query: 410 YYIWLAAQSPRGEGATTPPIPVRTKQYGKTPGFGEQALYPNTLYYIWLAAQSPRGEGATT 469
Y I + RGE T P + G L + Y ++A + G G +
Sbjct: 64 YKIRHRKTTRRGEMETLEP----NNLWYLFTG-----LEKGSQYSFQVSAMTVNGTGPPS 114
Query: 470 PPIPVRTKQ 478
T +
Sbjct: 115 NWYTAETPE 123
Score = 32.7 bits (75), Expect = 0.17
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 871 IQVAALTRKGDGDRSKPETIKTPGGVPNRP 900
++ R G G + T+ T VP+ P
Sbjct: 2 SSGSSGNRYGPGVSTDDITVVTLSDVPSAP 31
>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 132
Score = 140 bits (355), Expect = 4e-39
Identities = 41/120 (34%), Positives = 60/120 (50%)
Query: 699 GEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVE 758
G ++ + VRT VP A PQN+S E +S SI I W+PP NG I YK+++ +
Sbjct: 1 GSSGSSGDVAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRK 60
Query: 759 TGRSDSEASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDPSE 818
R + Q S +++ L + TEY V A T G GP++ ++ T E D E
Sbjct: 61 ASRKSDVTETLVSGTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDWLSAETFESDLDE 120
Score = 125 bits (315), Expect = 1e-33
Identities = 35/127 (27%), Positives = 53/127 (41%), Gaps = 3/127 (2%)
Query: 464 GEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEP--ETPNGQITGYKVYYTQ 521
G ++ + VRT P AP+++ + +S +++I W P T NGQITGYK+ Y +
Sbjct: 1 GSSGSSGDVAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRK 60
Query: 522 DQSLPMSAWETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPS 581
V I L T Y RV A T G GP + + +T +
Sbjct: 61 ASRKSDVTETL-VSGTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDWLSAETFESDLD 119
Query: 582 QPRDLRA 588
+ R
Sbjct: 120 ETRVPEV 126
Score = 86.6 bits (215), Expect = 3e-20
Identities = 27/115 (23%), Positives = 42/115 (36%), Gaps = 16/115 (13%)
Query: 277 GRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEP--ETPNGQIT-------- 326
G S + T P AP+++ + +S +++I W P T NGQIT
Sbjct: 1 GSSGSSGDVAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRK 60
Query: 327 ------AKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQ 375
G + + GL T Y +AA + G G T + T +
Sbjct: 61 ASRKSDVTETLVSGTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDWLSAETFE 115
Score = 73.5 bits (181), Expect = 1e-15
Identities = 26/162 (16%), Positives = 44/162 (27%), Gaps = 44/162 (27%)
Query: 563 GPGPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYA 622
G S V V+T VPS
Sbjct: 1 GSSGSSGDVAVRTLSDVPSAA--------------------------------------- 21
Query: 623 KPRDLRAVDIQETAVTLAWSKPTHSGEN--IISYELYW--NDTYAKAKHHRRIGLVETYS 678
P++L ++ + W P + +N I Y++ + + G +
Sbjct: 22 -PQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTETLVSGTQLSQL 80
Query: 679 LTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPP 720
+ GL T Y +AA + G G T + T +
Sbjct: 81 IEGLDRGTEYNFRVAALTINGTGPATDWLSAETFESDLDETR 122
Score = 70.1 bits (172), Expect = 2e-14
Identities = 24/113 (21%), Positives = 45/113 (39%), Gaps = 7/113 (6%)
Query: 202 VAPLDVKISEVTATSVRLDWTYPSET-----LLYYVIQYKPKAANTPYSE-ISGIITTYY 255
AP ++ + + S+ + W P+ + Y I+Y+ + + +E +
Sbjct: 20 AAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTETLVSGTQLSQ 79
Query: 256 TVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLSS 308
+ L TEY F + A+ G GP + T E++ R +V SS
Sbjct: 80 LIEGLDRGTEYNFRVAALTINGTGPATDWLSAETFESDLD-ETRVPEVSGPSS 131
Score = 62.8 bits (153), Expect = 6e-12
Identities = 26/124 (20%), Positives = 38/124 (30%), Gaps = 21/124 (16%)
Query: 799 GDGPSSYPITIRTHEDDPSEVCPTQNDFR--------------KNKKTNGS------NFK 838
G SS + +RT D PS P NG ++
Sbjct: 1 GSSGSSGDVAVRTLSDVPSAA-PQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYR 59
Query: 839 GGYLNDPMRFDVSDGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKTPGGVPN 898
+ + G L + GL T Y +VAALT G G + + +T +
Sbjct: 60 KASRKSDVTETLVSGTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDWLSAETFESDLD 119
Query: 899 RPHV 902
V
Sbjct: 120 ETRV 123
Score = 42.0 bits (99), Expect = 1e-04
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 19 PLPPLIPGYILVTEPGTAPRDVQVRPLSSSTMVIQWDEP--ETPNGQITH 66
+ L P AP+++ + +S +++I W P T NGQIT
Sbjct: 4 GSSGDVAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITG 53
Score = 40.0 bits (94), Expect = 5e-04
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 447 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLSS 495
L T Y +AA + G G T + T + + R +V SS
Sbjct: 84 LDRGTEYNFRVAALTINGTGPATDWLSAETFESDLD-ETRVPEVSGPSS 131
>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A
{Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
Length = 205
Score = 140 bits (354), Expect = 5e-38
Identities = 35/197 (17%), Positives = 74/197 (37%), Gaps = 7/197 (3%)
Query: 624 PRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLV---ETYSLT 680
P+ + Q + W + + I+ Y + +N ++ A V ++ +
Sbjct: 9 PKLTG-ITCQADKAEIHWEQQGDNRSPILHYTIQFNTSFTPASWDAAYEKVPNTDSSFVV 67
Query: 681 GLYPNTLYYIWLAAQSPRGEGATTPP-IPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEP 739
+ P Y + A + G + T+ VP P NV + ++ ISW P
Sbjct: 68 QMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDNVVGQGTEPNNLVISWTP 127
Query: 740 PPVERSNGHIVYYKLQF-VETGRSDSEASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSI 798
P N +Y + + + + E + + Q + V+ + + +Y I V+A
Sbjct: 128 MPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIADQPTFVKYLIKVVAINDR 187
Query: 799 GDGP-SSYPITIRTHED 814
G+ ++ + + ED
Sbjct: 188 GESNVAAEEVVGYSGED 204
Score = 122 bits (307), Expect = 9e-32
Identities = 39/195 (20%), Positives = 62/195 (31%), Gaps = 24/195 (12%)
Query: 200 LPVAPLDVKISEVTATSVRLDWTYPSET---LLYYVIQYKPKAANTPYSEISGII--TTY 254
+P AP I A + W + +L+Y IQ+ + + T
Sbjct: 5 VPNAPKLTGI-TCQADKAEIHWEQQGDNRSPILHYTIQFNTSFTPASWDAAYEKVPNTDS 63
Query: 255 YTVRNLSPYTEYEFYIIAVNNLGRGPPSSPA-VITTGETEPGTAPRDVQVRPLSSSTMVI 313
V +SP+ Y F +IA N +G PPS+ + TT P P +V + + +VI
Sbjct: 64 SFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDNVVGQGTEPNNLVI 123
Query: 314 QWDEPETP--NGQIT---------------AKHHRRIGLVETYSLTGLYPNTLYYIWLAA 356
W N ++ + Y I + A
Sbjct: 124 SWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIADQPTFVKYLIKVVA 183
Query: 357 QSPRGEGATTPPIPV 371
+ RGE V
Sbjct: 184 INDRGESNVAAEEVV 198
Score = 109 bits (274), Expect = 2e-27
Identities = 27/132 (20%), Positives = 47/132 (35%), Gaps = 7/132 (5%)
Query: 447 LYPNTLYYIWLAAQSPRGEGATTPP-IPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEP 505
+ P Y + A + G + T+ P P +V + + +VI W
Sbjct: 69 MSPWANYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDNVVGQGTEPNNLVISWTPM 128
Query: 506 ETP--NGQITGYKVYYTQDQSLPMSAWETQVVDNNQLT--TISDLTPHTIYTIRVQAFTS 561
N Y V + +D +AWE + + + I+D Y I+V A
Sbjct: 129 PEIEHNAPNFHYYVSWKRDIP--AAAWENNNIFDWRQNNIVIADQPTFVKYLIKVVAIND 186
Query: 562 VGPGPLSAPVLV 573
G ++A +V
Sbjct: 187 RGESNVAAEEVV 198
Score = 93.2 bits (232), Expect = 1e-21
Identities = 37/230 (16%), Positives = 64/230 (27%), Gaps = 43/230 (18%)
Query: 484 APRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLTTI 543
AP+ + + I W++ I Y + + + + V N + +
Sbjct: 8 APKLTGIT-CQADKAEIHWEQQGDNRSPILHYTIQFNTSFTPASWDAAYEKVPNTDSSFV 66
Query: 544 SDLTPHTIYTIRVQAFTSVGPGPLSAPVL-VKTQQGVPSQ-PRDLRAVDIQETAVTLAWS 601
++P YT RV AF +G P SA TQ VP + P ++ + + ++W+
Sbjct: 67 VQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDNVVGQGTEPNNLVISWT 126
Query: 602 KPTHSGEN--IISYELYWNDTYAKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWN 659
N Y + W + AW
Sbjct: 127 PMPEIEHNAPNFHYYVSW---------------KRDIPAAAWENNNIFDWR--------- 162
Query: 660 DTYAKAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPV 709
+ Y I + A + RGE V
Sbjct: 163 --------------QNNIVIADQPTFVKYLIKVVAINDRGESNVAAEEVV 198
Score = 84.0 bits (208), Expect = 2e-18
Identities = 38/205 (18%), Positives = 67/205 (32%), Gaps = 32/205 (15%)
Query: 715 VPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDS-EASIVTLKN 773
VP P+ + I WE + I++Y +QF + S +A+ + N
Sbjct: 5 VPN-APKLTGIT-CQADKAEIHWEQQG--DNRSPILHYTIQFNTSFTPASWDAAYEKVPN 60
Query: 774 QTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYP-ITIRTHEDDPSEVCPTQNDFRKNKKT 832
S + ++ W Y V+A IG P S + T D P + P + +
Sbjct: 61 TDSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFKN-PDNVVGQGTEPN 119
Query: 833 --------------NGSNFKGGYL---------NDPMRFDVSDGGALELNVTGLQPDTIY 869
N NF Y ++ D + + Y
Sbjct: 120 NLVISWTPMPEIEHNAPNF--HYYVSWKRDIPAAAWENNNIFDWRQNNIVIADQPTFVKY 177
Query: 870 TIQVAALTRKGDGDRSKPETIKTPG 894
I+V A+ +G+ + + E + G
Sbjct: 178 LIKVVAINDRGESNVAAEEVVGYSG 202
Score = 81.3 bits (201), Expect = 1e-17
Identities = 15/99 (15%), Positives = 35/99 (35%), Gaps = 8/99 (8%)
Query: 201 PVAPLDVKISEVTATSVRLDWTYPSET-----LLYYVIQYKPKAANTPYSE--ISGIITT 253
P +V ++ + WT E +Y + +K + I
Sbjct: 105 FKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQN 164
Query: 254 YYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVI-TTGE 291
+ + + +Y ++A+N+ G ++ V+ +GE
Sbjct: 165 NIVIADQPTFVKYLIKVVAINDRGESNVAAEEVVGYSGE 203
Score = 41.6 bits (98), Expect = 4e-04
Identities = 19/192 (9%), Positives = 40/192 (20%), Gaps = 58/192 (30%)
Query: 297 APRDVQVRPLSSSTMVIQWDEPETPNGQITA---------------KHHRRIGLVETYSL 341
AP+ + + I W++ I + ++ ++ +
Sbjct: 8 APKLTGIT-CQADKAEIHWEQQGDNRSPILHYTIQFNTSFTPASWDAAYEKVPNTDSSFV 66
Query: 342 TGLYPNTLYYIWLAAQSPRGEGATTPP-IPVRTKQ------------------------- 375
+ P Y + A + G + T+
Sbjct: 67 VQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDNVVGQGTEPNNLVISWT 126
Query: 376 -----YGKTPGFG-----------EQAAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSP 419
P F ++ + Y I + A +
Sbjct: 127 PMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIADQPTFVKYLIKVVAIND 186
Query: 420 RGEGATTPPIPV 431
RGE V
Sbjct: 187 RGESNVAAEEVV 198
Score = 37.0 bits (86), Expect = 0.012
Identities = 8/36 (22%), Positives = 12/36 (33%), Gaps = 2/36 (5%)
Query: 33 PGTAPRDVQVRPLSSSTMVIQWDEPETP--NGQITH 66
P P +V + + +VI W N H
Sbjct: 104 PFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFH 139
>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 134
Score = 137 bits (346), Expect = 8e-38
Identities = 50/122 (40%), Positives = 68/122 (55%), Gaps = 2/122 (1%)
Query: 699 GEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVE 758
G ++ I RT Q P APPQ V C + ST++R+SW PPP + NG I Y + +
Sbjct: 1 GSSGSSGTIEARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEA 60
Query: 759 TGRSDSEASIV--TLKNQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDP 816
D +V + +S+ L L+KWTEYR+WV A T +G GP S P+ +RT ED P
Sbjct: 61 VDGEDRGRHVVDGISREHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTDEDVP 120
Query: 817 SE 818
S
Sbjct: 121 SG 122
Score = 132 bits (334), Expect = 3e-36
Identities = 41/130 (31%), Positives = 60/130 (46%), Gaps = 4/130 (3%)
Query: 464 GEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEP--ETPNGQITGYKVYYTQ 521
G ++ I RT Q P P+ V + S+T+ + W P ++ NG IT Y V Y
Sbjct: 1 GSSGSSGTIEARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEA 60
Query: 522 DQSLPMSAWETQVVDNNQLT-TISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVP 580
+ + + L T Y + V+A T VGPGP S+PVLV+T + VP
Sbjct: 61 VDGEDRGRHVVDGISREHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTDEDVP 120
Query: 581 SQ-PRDLRAV 589
S PR + +
Sbjct: 121 SGPPRKVESG 130
Score = 87.8 bits (218), Expect = 1e-20
Identities = 38/170 (22%), Positives = 58/170 (34%), Gaps = 40/170 (23%)
Query: 563 GPGPLSAPVLVKTQQGVPSQ-PRDLRAVDIQETAVTLAWSKPTHSGEN--IISYELYWND 619
G S + +T Q PS P+ + V + T V ++W P N I Y + +
Sbjct: 1 GSSGSSGTIEARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEA 60
Query: 620 TYAKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVETYSL 679
+ R VD + ++ L
Sbjct: 61 VDGEDRGRHVVDGISREHS-------------------------------------SWDL 83
Query: 680 TGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQNVSCEPLS 729
GL T Y +W+ A + G G + P+ VRT + VP PP+ V P S
Sbjct: 84 VGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTDEDVPSGPPRKVESGPSS 133
Score = 85.5 bits (212), Expect = 6e-20
Identities = 27/117 (23%), Positives = 44/117 (37%), Gaps = 18/117 (15%)
Query: 277 GRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEP--ETPNGQIT-------- 326
G S T ++ P P+ V + S+T+ + W P ++ NG IT
Sbjct: 1 GSSGSSGTIEARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEA 60
Query: 327 --------AKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQ 375
++ L GL T Y +W+ A + G G + P+ VRT +
Sbjct: 61 VDGEDRGRHVVDGISREHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTDE 117
Score = 84.7 bits (210), Expect = 2e-19
Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 8/114 (7%)
Query: 202 VAPLDVKISEVTATSVRLDWTYPSET-----LLYYVIQYKPKAANTPYSEISGII---TT 253
P V + +T+VR+ W P + Y + Y+ + I +
Sbjct: 20 APPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGEDRGRHVVDGISREHS 79
Query: 254 YYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLS 307
+ + L +TEY ++ A ++G GP SSP ++ T E P PR V+ P S
Sbjct: 80 SWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTDEDVPSGPPRKVESGPSS 133
Score = 61.2 bits (149), Expect = 2e-11
Identities = 28/128 (21%), Positives = 38/128 (29%), Gaps = 23/128 (17%)
Query: 799 GDGPSSYPITIRTHEDDPSEVCPTQNDFR--------------KNKKTNGS--------N 836
G SS I RT + PS P + NG
Sbjct: 1 GSSGSSGTIEARTAQSTPSAP-PQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYE 59
Query: 837 FKGGYLNDPMRFDVSDGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKTPGGV 896
G D ++ GL+ T Y + V A T G G S P ++T V
Sbjct: 60 AVDGEDRGRHVVDGISREHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTDEDV 119
Query: 897 PNRPHVNL 904
P+ P +
Sbjct: 120 PSGPPRKV 127
Score = 50.5 bits (121), Expect = 1e-07
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 447 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLS 494
L T Y +W+ A + G G + P+ VRT + P PR V+ P S
Sbjct: 86 LEKWTEYRVWVRAHTDVGPGPESSPVLVRTDEDVPSGPPRKVESGPSS 133
Score = 42.7 bits (101), Expect = 6e-05
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 19 PLPPLIPGYILVTEPGTAPRDVQVRPLSSSTMVIQWDEP--ETPNGQIT 65
I + P P+ V + S+T+ + W P ++ NG IT
Sbjct: 4 GSSGTIEARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVIT 52
>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 119
Score = 129 bits (326), Expect = 2e-35
Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 2/117 (1%)
Query: 464 GEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQ 523
G ++ + + Q P AP +V V+ LSSS + + W+ + Y++ Y
Sbjct: 1 GSSGSSGVAVINSAQDAPSEAPTEVGVKVLSSSEISVHWEHV--LEKIVESYQIRYWAAH 58
Query: 524 SLPMSAWETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVP 580
+A QV + +L P T Y I V A S G GP S + T++
Sbjct: 59 DKEEAANRVQVTSQEYSARLENLLPDTQYFIEVGACNSAGCGPPSDMIEAFTKKASG 115
Score = 117 bits (294), Expect = 5e-31
Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 5/119 (4%)
Query: 699 GEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVE 758
G ++ + + Q P P V + LSS+ I + WE + Y++++
Sbjct: 1 GSSGSSGVAVINSAQDAPSEAPTEVGVKVLSSSEISVHWEHVL----EKIVESYQIRYWA 56
Query: 759 TGRSDSEASIVTLK-NQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDP 816
+ A+ V + + S L+ L T+Y I V A S G GP S I T +
Sbjct: 57 AHDKEEAANRVQVTSQEYSARLENLLPDTQYFIEVGACNSAGCGPPSDMIEAFTKKASG 115
Score = 87.8 bits (218), Expect = 7e-21
Identities = 28/114 (24%), Positives = 44/114 (38%), Gaps = 17/114 (14%)
Query: 277 GRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQIT---------- 326
G S AVI + + P AP +V V+ LSSS + + W+ +
Sbjct: 1 GSSGSSGVAVINSAQDAPSEAPTEVGVKVLSSSEISVHWEHV--LEKIVESYQIRYWAAH 58
Query: 327 -----AKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQ 375
A + + L L P+T Y+I + A + G G + I TK+
Sbjct: 59 DKEEAANRVQVTSQEYSARLENLLPDTQYFIEVGACNSAGCGPPSDMIEAFTKK 112
Score = 65.8 bits (161), Expect = 3e-13
Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 3/96 (3%)
Query: 202 VAPLDVKISEVTATSVRLDWTYPSE-TLLYYVIQYKPKAANTPYSEISGIIT--TYYTVR 258
AP +V + ++++ + + W + E + Y I+Y + + + +
Sbjct: 20 EAPTEVGVKVLSSSEISVHWEHVLEKIVESYQIRYWAAHDKEEAANRVQVTSQEYSARLE 79
Query: 259 NLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEP 294
NL P T+Y + A N+ G GPPS T +
Sbjct: 80 NLLPDTQYFIEVGACNSAGCGPPSDMIEAFTKKASG 115
Score = 62.4 bits (152), Expect = 7e-12
Identities = 24/162 (14%), Positives = 50/162 (30%), Gaps = 47/162 (29%)
Query: 563 GPGPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYA 622
G S ++ + Q PS+
Sbjct: 1 GSSGSSGVAVINSAQDAPSEA--------------------------------------- 21
Query: 623 KPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRI---GLVETYSL 679
P ++ + + +++ W + + SY++ + + K + R+ + L
Sbjct: 22 -PTEVGVKVLSSSEISVHWEHVLE--KIVESYQIRYWAAHDKEEAANRVQVTSQEYSARL 78
Query: 680 TGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQ 721
L P+T Y+I + A + G G + I TK+ P
Sbjct: 79 ENLLPDTQYFIEVGACNSAGCGPPSDMIEAFTKKASG--PSS 118
Score = 56.6 bits (137), Expect = 6e-10
Identities = 20/115 (17%), Positives = 29/115 (25%), Gaps = 16/115 (13%)
Query: 799 GDGPSSYPITIRTHEDDPSE---------VCPTQNDFRKNKKTNGSN-------FKGGYL 842
G SS I + +D PSE + ++ +
Sbjct: 1 GSSGSSGVAVINSAQDAPSEAPTEVGVKVLSSSEISVHWEHVLEKIVESYQIRYWAAHDK 60
Query: 843 NDPMRFDVSDGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKTPGGVP 897
+ + L PDT Y I+V A G G S T
Sbjct: 61 EEAANRVQVTSQEYSARLENLLPDTQYFIEVGACNSAGCGPPSDMIEAFTKKASG 115
Score = 43.1 bits (102), Expect = 3e-05
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Query: 19 PLPPLIPGYILVTEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQIT 65
+ P AP +V V+ LSSS + + W+ +
Sbjct: 4 GSSGVAVINSAQDAPSEAPTEVGVKVLSSSEISVHWEHV--LEKIVE 48
Score = 33.1 bits (76), Expect = 0.10
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 447 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEP 481
L P+T Y+I + A + G G + I TK+
Sbjct: 81 LLPDTQYFIEVGACNSAGCGPPSDMIEAFTKKASG 115
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera
phosphorylation, transmembrane, tyrosine-protein kinase,
glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB:
2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Length = 536
Score = 141 bits (355), Expect = 2e-35
Identities = 49/302 (16%), Positives = 86/302 (28%), Gaps = 54/302 (17%)
Query: 422 EGATTPPIPVRTKQYGKTPGFGEQALYPNTLYYIWLAAQSPRGEGA--TTPPIPVRTKQY 479
E + P A S E P P
Sbjct: 272 EKVEDACQACSPGFFKFEASESPCLECPEHTLPSPEGATSCECEEGFFRAPQDPASMPCT 331
Query: 480 EPGTAPRDVQVRPLSSSTMVIQWDEPETPNG-QITGYKVYYTQ---------DQSLPMSA 529
P +AP + + + ++W P+ G + Y V Q +
Sbjct: 332 RPPSAPHYLTAVG-MGAKVELRWTPPQDSGGREDIVYSVTCEQCWPESGECGPCEASVRY 390
Query: 530 WETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPSQPRDLRAV 589
E T+SDL PH YT V+A V S + ++P +R
Sbjct: 391 SEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTASVSINQTEPPKVRLE 450
Query: 590 DIQETAVTLAWSKPTHSGENIISYELYWNDTYAKPRDLRAVDIQETAVTLAWSKPTHSGE 649
T+++++WS P + YE+ + D + +++ T
Sbjct: 451 GRSTTSLSVSWSIPPPQQSRVWKYEVTYRKKG----DSNSYNVRRTEGF----------- 495
Query: 650 NIISYELYWNDTYAKAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPV 709
+ +L L P+T Y + + A + G+GA +
Sbjct: 496 --------------------------SVTLDDLAPDTTYLVQVQALTQEGQGAGSKVHEF 529
Query: 710 RT 711
+T
Sbjct: 530 QT 531
Score = 129 bits (325), Expect = 2e-31
Identities = 36/235 (15%), Positives = 72/235 (30%), Gaps = 35/235 (14%)
Query: 166 TESENYTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISEVTATSVRLDWTYPS 225
+ +C T P + + V L WT P
Sbjct: 305 SPEGATSCECEEGFFRAPQDPASMPC-------TRPPSAPHYLTAVGMGAKVELRWTPPQ 357
Query: 226 ET----LLYYVIQYKPKAANTPYSEIS-----------GIITTYYTVRNLSPYTEYEFYI 270
++ + Y + + + G+ T TV +L P+ Y F +
Sbjct: 358 DSGGREDIVYSVTCEQCWPESGECGPCEASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTV 417
Query: 271 IAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITA--- 327
A N + S + P V++ S++++ + W P ++
Sbjct: 418 EARNGVSGLVTSRSFRTASVSINQT-EPPKVRLEGRSTTSLSVSWSIPPPQQSRVWKYEV 476
Query: 328 ---------KHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRT 373
++ R + +L L P+T Y + + A + G+GA + +T
Sbjct: 477 TYRKKGDSNSYNVRRTEGFSVTLDDLAPDTTYLVQVQALTQEGQGAGSKVHEFQT 531
Score = 127 bits (320), Expect = 6e-31
Identities = 49/336 (14%), Positives = 92/336 (27%), Gaps = 38/336 (11%)
Query: 481 PGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQL 540
P + +W P GY+ Q+ ++ + ++ L
Sbjct: 237 DHAVVPPGGEEPRMHCAVDGEWLVPIGQCLCQAGYEKVEDACQACSPGFFKFEASESPCL 296
Query: 541 TTISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLAW 600
P + P + T+ P V L W
Sbjct: 297 ECPEHTLPSPEGATSCECEEGFFRAPQDPASMPCTR---PPSAPHYLTAVGMGAKVELRW 353
Query: 601 SKPTHS-GENIISYELYWNDTYAKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWN 659
+ P S G I Y + + + + + S
Sbjct: 354 TPPQDSGGREDIVYSVTCEQCWPESGECGPCEASVRYSEPPHGLTRTS------------ 401
Query: 660 DTYAKAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAP 719
+++ L P+ Y + A++ T+ +
Sbjct: 402 -----------------VTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTASVSINQT-E 443
Query: 720 PQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFVL 779
P V E S+TS+ +SW PP + Y++ + + + ++ + S L
Sbjct: 444 PPKVRLEGRSTTSLSVSWSIPP--PQQSRVWKYEVTYRKK-GDSNSYNVRRTEG-FSVTL 499
Query: 780 DELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDD 815
D+L T Y + V A T G G S +T +
Sbjct: 500 DDLAPDTTYLVQVQALTQEGQGAGSKVHEFQTLSPE 535
Score = 113 bits (284), Expect = 2e-26
Identities = 45/281 (16%), Positives = 79/281 (28%), Gaps = 34/281 (12%)
Query: 641 WSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGE 700
W P G+ + + +A + S P A S E
Sbjct: 258 WLVPI--GQCLCQAGYEKVEDACQACSPGFFKFEASESPCLECPEHTLPSPEGATSCECE 315
Query: 701 GA--TTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVE 758
P P P + P ++ + + W PP + + Y + +
Sbjct: 316 EGFFRAPQDPASMPCTRPPSAPHYLTAVG-MGAKVELRWTPP-QDSGGREDIVYSVTCEQ 373
Query: 759 TGRSDSEAS----------IVTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPIT 808
E +TS + +L+ Y V A + +S
Sbjct: 374 CWPESGECGPCEASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFR 433
Query: 809 IRTHEDDPSEVCPTQNDFRKNK----------KTNGSNFKGGY------LNDPMRFDVSD 852
+ + +E + + R + Y D ++V
Sbjct: 434 TASVSINQTEPPKVRLEGRSTTSLSVSWSIPPPQQSRVW--KYEVTYRKKGDSNSYNVRR 491
Query: 853 GGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKTP 893
+ + L PDT Y +QV ALT++G G SK +T
Sbjct: 492 TEGFSVTLDDLAPDTTYLVQVQALTQEGQGAGSKVHEFQTL 532
Score = 112 bits (280), Expect = 7e-26
Identities = 47/315 (14%), Positives = 80/315 (25%), Gaps = 23/315 (7%)
Query: 279 GPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEP----------ETPNGQITAK 328
G + G P + +W P E A
Sbjct: 222 GSDAPSLATVAGTCVDHAVVPPGGEEPRMHCAVDGEWLVPIGQCLCQAGYEKVEDACQAC 281
Query: 329 HHRRIGLVETYSLTGLYPNTLYYIWLAAQS---PRGEGATTPPIPVRTKQYGKTPGFGEQ 385
+ S P A S G +
Sbjct: 282 SPGFFKFEASESPCLECPEHTLPSPEGATSCECEEGFFRAPQDPASMPCTRPPSAPHYLT 341
Query: 386 AAKHHRRIGLV-ETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVR---TKQYGKTPG 441
A ++ L +G + +Y + P VR
Sbjct: 342 AVGMGAKVELRWTPPQDSGGREDIVYSVTCEQCWPESGECGPCEASVRYSEPPHGLTRTS 401
Query: 442 FGEQALYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQ 501
L P+ Y + A++ T+ + P V++ S++++ +
Sbjct: 402 VTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTASVSINQT-EPPKVRLEGRSTTSLSVS 460
Query: 502 WDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLT-TISDLTPHTIYTIRVQAFT 560
W P ++ Y+V Y + V + T+ DL P T Y ++VQA T
Sbjct: 461 WSIPPPQQSRVWKYEVTY----RKKGDSNSYNVRRTEGFSVTLDDLAPDTTYLVQVQALT 516
Query: 561 SVGPGPLSAPVLVKT 575
G G S +T
Sbjct: 517 QEGQGAGSKVHEFQT 531
Score = 44.4 bits (104), Expect = 1e-04
Identities = 9/51 (17%), Positives = 14/51 (27%)
Query: 850 VSDGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKTPGGVPNRP 900
+ V+ L+P YT V A S+ + P
Sbjct: 394 PHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTASVSINQTEP 444
Score = 37.1 bits (85), Expect = 0.027
Identities = 7/37 (18%), Positives = 17/37 (45%)
Query: 30 VTEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITH 66
V+ T P V++ S++++ + W P ++
Sbjct: 437 VSINQTEPPKVRLEGRSTTSLSVSWSIPPPQQSRVWK 473
Score = 30.9 bits (69), Expect = 2.3
Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 22 PLIPGYILVTEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQ 63
P P + T P +AP + + + ++W P+ G+
Sbjct: 322 PQDPASMPCTRPPSAPHYLTAVG-MGAKVELRWTPPQDSGGR 362
>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII
domain, dscaml1 protein, structural genomics; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 122
Score = 127 bits (322), Expect = 7e-35
Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 4/119 (3%)
Query: 703 TTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRS 762
++ + T++ P PP +V+ +P++S SI+++W+ P E NG I Y++ + E
Sbjct: 2 SSGSSGISTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPG 61
Query: 763 D----SEASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDPS 817
S + + + LD LKK+ +Y + V A G GPSS I T E PS
Sbjct: 62 SNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATTLESGPS 120
Score = 123 bits (311), Expect = 2e-33
Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 5/119 (4%)
Query: 468 TTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEP--ETPNGQITGYKVYYTQDQSL 525
++ + T++ P P DV ++P++S ++ + W P E NG I GY++ Y ++
Sbjct: 2 SSGSSGISTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPG 61
Query: 526 PMSAWETQVVD---NNQLTTISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPS 581
+ + ++++ T+ +L Y + VQAF G GP S+ + T + PS
Sbjct: 62 SNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATTLESGPS 120
Score = 82.4 bits (204), Expect = 7e-19
Identities = 27/115 (23%), Positives = 44/115 (38%), Gaps = 20/115 (17%)
Query: 281 PSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEP--ETPNGQIT------------ 326
S + I+T E P P DV ++P++S ++ + W P E NG I
Sbjct: 2 SSGSSGISTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPG 61
Query: 327 ------AKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQ 375
+ G E Y+L L Y + + A + G G ++ I T +
Sbjct: 62 SNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATTLE 116
Score = 74.3 bits (183), Expect = 5e-16
Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 10/105 (9%)
Query: 203 APLDVKISEVTATSVRLDWTYPSET-----LLYYVIQYKPKAANTPYSEISGIIT----- 252
P+DV + VT+ S+++ W P + + Y I Y+ + + +
Sbjct: 18 PPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMKATGDS 77
Query: 253 TYYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTA 297
YT+ NL + +Y + A N G GP SS TT E+ P +
Sbjct: 78 EVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATTLESGPSSG 122
Score = 65.1 bits (159), Expect = 9e-13
Identities = 26/158 (16%), Positives = 50/158 (31%), Gaps = 41/158 (25%)
Query: 565 GPLSAPVLVKTQQGVPSQ-PRDLRAVDIQETAVTLAWSKPTHSGEN--IISYEL-YWNDT 620
G S + T++ P P D+ + ++ + W P +N I Y++ Y ++
Sbjct: 1 GS-SGSSGISTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENS 59
Query: 621 YAKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVETYSLT 680
V+++ T G E Y+L
Sbjct: 60 PGSNGQYSIVEMKAT------------------------------------GDSEVYTLD 83
Query: 681 GLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGA 718
L Y + + A + G G ++ I T + P +
Sbjct: 84 NLKKFAQYGVVVQAFNRAGTGPSSSEINATTLESGPSS 121
Score = 52.8 bits (127), Expect = 2e-08
Identities = 11/47 (23%), Positives = 16/47 (34%)
Query: 851 SDGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKTPGGVP 897
+ G + + L+ Y + V A R G G S T P
Sbjct: 73 ATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATTLESGP 119
Score = 42.0 bits (99), Expect = 8e-05
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 32 EPGTAPRDVQVRPLSSSTMVIQWDEP--ETPNGQIT 65
P P DV ++P++S ++ + W P E NG I
Sbjct: 14 APDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIR 49
Score = 37.3 bits (87), Expect = 0.004
Identities = 16/79 (20%), Positives = 24/79 (30%), Gaps = 11/79 (13%)
Query: 410 YYIWLAAQSPRGEGATTPPIPVRTKQYGKTPGFGEQA----LYPNTLYYIWLAAQSPRGE 465
Y I SP G + K G E L Y + + A + G
Sbjct: 51 YQIGYRENSPGSNGQ-------YSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGT 103
Query: 466 GATTPPIPVRTKQYEPGTA 484
G ++ I T + P +
Sbjct: 104 GPSSSEINATTLESGPSSG 122
>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural
protein; 1.65A {Homo sapiens}
Length = 197
Score = 126 bits (318), Expect = 3e-33
Identities = 44/197 (22%), Positives = 75/197 (38%), Gaps = 23/197 (11%)
Query: 198 LTLPVAPLDVKISEVTATSVRLDWTYPSET----LLYYVIQYKPKAANTPYSEISGIITT 253
+ P P D+K+ EVT TSV L W P + Y+++ + + + T
Sbjct: 3 MDTPGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNCHKT 62
Query: 254 YYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVI 313
+ V L Y F ++A N G G P+ A P P + + ++ +++ +
Sbjct: 63 SWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASERPL-PPGKITLMDVTRNSVSL 121
Query: 314 QWDEPETPNG-QIT--------------AKHHRRIGLVETYSLTGLYPNTLYYIWLAAQS 358
W++PE G +I A V ++TGL Y ++AQ+
Sbjct: 122 SWEKPEHDGGSRILGYIVEMQTKGSDKWATCAT--VKVTEATITGLIQGEEYSFRVSAQN 179
Query: 359 PRGEGATTPPI-PVRTK 374
+G PV K
Sbjct: 180 EKGISDPRQLSVPVIAK 196
Score = 114 bits (288), Expect = 3e-29
Identities = 40/193 (20%), Positives = 70/193 (36%), Gaps = 6/193 (3%)
Query: 624 PRDLRAVDIQETAVTLAWSKPTHS-GENIISYELYWNDTYAKAKHHRRIGLVET-YSLTG 681
P+DL+ ++ +T+VTL W P G I +Y + ++ KA +T + +
Sbjct: 9 PQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNCHKTSWKVDQ 68
Query: 682 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPP 741
L YY + A++ G G P PP ++ ++ S+ +SWE P
Sbjct: 69 LQEGCSYYFRVLAENEYGIGLPAETAESVKASERPL-PPGKITLMDVTRNSVSLSWEKPE 127
Query: 742 VERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDG 801
I+ Y ++ G + + T + L + EY V A G
Sbjct: 128 -HDGGSRILGYIVEMQTKG--SDKWATCATVKVTEATITGLIQGEEYSFRVSAQNEKGIS 184
Query: 802 PSSYPITIRTHED 814
+D
Sbjct: 185 DPRQLSVPVIAKD 197
Score = 108 bits (273), Expect = 3e-27
Identities = 45/236 (19%), Positives = 79/236 (33%), Gaps = 49/236 (20%)
Query: 481 PGTAPRDVQVRPLSSSTMVIQWDEPETPNGQ-ITGYKVYYTQDQSLPMSAWETQVVDNNQ 539
PG P+D++V+ ++ +++ + WD P G I Y V + A+ T + ++
Sbjct: 6 PG-PPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTR---KAYSTVATNCHK 61
Query: 540 LT-TISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTL 598
+ + L Y RV A G G + P P + +D+ +V+L
Sbjct: 62 TSWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASERPLPPGKITLMDVTRNSVSL 121
Query: 599 AWSKPTHSG-ENIISYELYWNDTYAKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELY 657
+W KP H G I+ Y + + S +
Sbjct: 122 SWEKPEHDGGSRILGYIVEM-------------------------QTKGSDKWATCAT-- 154
Query: 658 WNDTYAKAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPI-PVRTK 712
V ++TGL Y ++AQ+ +G PV K
Sbjct: 155 --------------VKVTEATITGLIQGEEYSFRVSAQNEKGISDPRQLSVPVIAK 196
Score = 101 bits (254), Expect = 1e-24
Identities = 27/125 (21%), Positives = 43/125 (34%), Gaps = 5/125 (4%)
Query: 447 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPE 506
L YY + A++ G G P P + + ++ +++ + W++PE
Sbjct: 69 LQEGCSYYFRVLAENEYGIGLPAETAESVKASERPL-PPGKITLMDVTRNSVSLSWEKPE 127
Query: 507 TPNG-QITGYKVYYTQDQSLPMSAWETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVGPG 565
G +I GY V S W T TI+ L Y+ RV A G
Sbjct: 128 HDGGSRILGYIVEMQTKGS---DKWATCATVKVTEATITGLIQGEEYSFRVSAQNEKGIS 184
Query: 566 PLSAP 570
Sbjct: 185 DPRQL 189
Score = 89.3 bits (222), Expect = 2e-20
Identities = 40/199 (20%), Positives = 73/199 (36%), Gaps = 27/199 (13%)
Query: 715 VPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGH--IVYYKLQFVETGRSDSEASIVTLK 772
PG PPQ++ + ++ TS+ ++W+PP +G I Y ++ E+ R
Sbjct: 5 TPG-PPQDLKVKEVTKTSVTLTWDPP---LLDGGSKIKNYIVEKRESTRKAYSTVATNCH 60
Query: 773 NQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDPSEVCPTQNDFRKNKKT 832
+TS+ +D+L++ Y VLA G G + + P P + +
Sbjct: 61 -KTSWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASERPLP--PGKITLMDVTRN 117
Query: 833 -----------NGSNFKGGYL------NDPMRFDVSDGGALELNVTGLQPDTIYTIQVAA 875
+G + GY+ + E +TGL Y+ +V+A
Sbjct: 118 SVSLSWEKPEHDGGSRILGYIVEMQTKGSDKWATCATVKVTEATITGLIQGEEYSFRVSA 177
Query: 876 LTRKGDGDRSKP-ETIKTP 893
KG D + +
Sbjct: 178 QNEKGISDPRQLSVPVIAK 196
Score = 43.1 bits (102), Expect = 1e-04
Identities = 10/51 (19%), Positives = 15/51 (29%)
Query: 850 VSDGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKTPGGVPNRP 900
++ V LQ Y +V A G G ++ P P
Sbjct: 56 ATNCHKTSWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASERPLPP 106
Score = 33.5 bits (77), Expect = 0.16
Identities = 6/31 (19%), Positives = 16/31 (51%)
Query: 32 EPGTAPRDVQVRPLSSSTMVIQWDEPETPNG 62
E P + + ++ +++ + W++PE G
Sbjct: 101 ERPLPPGKITLMDVTRNSVSLSWEKPEHDGG 131
Score = 30.8 bits (70), Expect = 1.6
Identities = 10/35 (28%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 33 PGTAPRDVQVRPLSSSTMVIQWDEPETPNGQ-ITH 66
PG P+D++V+ ++ +++ + WD P G I +
Sbjct: 6 PG-PPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKN 39
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 124 bits (313), Expect = 2e-32
Identities = 37/215 (17%), Positives = 78/215 (36%), Gaps = 25/215 (11%)
Query: 90 AHAVRQVADPVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRK-GQNIELT 148
A + V P+ P + + +N++C P + W + GQ + +
Sbjct: 5 AASSALVPRGSHMYAPKLQ--GPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSS 62
Query: 149 PDDKLPV----GRNVLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQCKYAPLLTLPV 202
+ + + L + +E++ NY C A + +G I+ P
Sbjct: 63 NYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQA-------DTPS 115
Query: 203 APLDVKISEVTATSVRLDWTYPSET----LLYYVIQYKPKAANTPYSEI----SGIITTY 254
+P + E +++ ++ + P T +L Y +++ +S+ +
Sbjct: 116 SP-SIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGI 174
Query: 255 YTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITT 289
T+ L P T Y + A+N G G S+ + T
Sbjct: 175 VTIVGLKPETTYAVRLAALNGKGLGEISAASEFKT 209
Score = 67.5 bits (165), Expect = 7e-13
Identities = 33/100 (33%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Query: 480 EPGTAPRDVQVRPLSSSTMVIQWDEPETPNG-QITGYKV-YYTQDQSLPMSAWET-QVVD 536
+ ++P QV P SST +Q+DEPE G I YK + + + S W +
Sbjct: 112 DTPSSPSIDQVEP-YSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEAS 170
Query: 537 NNQLTTISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQ 576
+ TI L P T Y +R+ A G G +SA KTQ
Sbjct: 171 MEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQ 210
Score = 60.2 bits (146), Expect = 3e-10
Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 5/100 (5%)
Query: 716 PGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKN-- 773
+ P EP S++ ++ ++ P I+ YK ++ G + K
Sbjct: 113 TPSSPSIDQVEP-YSSTAQVQFDEPEAT-GGVPILKYKAEWRAVGEEVWHSKWYDAKEAS 170
Query: 774 -QTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTH 812
+ + LK T Y + + A G G S +T
Sbjct: 171 MEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQ 210
Score = 45.2 bits (107), Expect = 3e-05
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 6/95 (6%)
Query: 624 PRDLRAVDIQETAVTLAWSKP-THSGENIISYELYWNDTYAKAKHHRRIGLVE-----TY 677
+ V+ + + + +P G I+ Y+ W + H + E
Sbjct: 116 SPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIV 175
Query: 678 SLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTK 712
++ GL P T Y + LAA + +G G + +T+
Sbjct: 176 TIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQ 210
Score = 42.1 bits (99), Expect = 3e-04
Identities = 28/123 (22%), Positives = 45/123 (36%), Gaps = 23/123 (18%)
Query: 270 IIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEPETPNG------ 323
AVN +G + + ++P QV P SST +Q+DEPE G
Sbjct: 93 CTAVNRIG----QESLEFILVQADTPSSPSIDQVEP-YSSTAQVQFDEPEATGGVPILKY 147
Query: 324 ------------QITAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPV 371
+ + ++ GL P T Y + LAA + +G G +
Sbjct: 148 KAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEF 207
Query: 372 RTK 374
+T+
Sbjct: 208 KTQ 210
Score = 36.0 bits (83), Expect = 0.035
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 859 NVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKT 892
+ GL+P+T Y +++AAL KG G+ S KT
Sbjct: 176 TIVGLKPETTYAVRLAALNGKGLGEISAASEFKT 209
Score = 28.3 bits (63), Expect = 9.8
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 27 YILVTEPGTAPRDVQVRPLSSSTMVIQWDEPETPNG-QITH 66
++ + ++P QV P SST +Q+DEPE G I
Sbjct: 107 ILVQADTPSSPSIDQVEP-YSSTAQVQFDEPEATGGVPILK 146
>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 114
Score = 120 bits (303), Expect = 2e-32
Identities = 37/108 (34%), Positives = 60/108 (55%), Gaps = 3/108 (2%)
Query: 476 TKQYEPGTAPRDVQV--RPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQ 533
+ P +AP+D+ V R +++ W P NG+IT Y ++YT D+++P+ W +
Sbjct: 3 SGSSGPTSAPKDLTVITREGKPRAVIVSWQPPLEANGKITAYILFYTLDKNIPIDDWIME 62
Query: 534 VVDNNQLT-TISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVP 580
+ ++LT I DL T+Y R+QA S G GPLS P+L +T +
Sbjct: 63 TISGDRLTHQIMDLNLDTMYYFRIQARNSKGVGPLSDPILFRTLKVSG 110
Score = 89.8 bits (223), Expect = 1e-21
Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 6/110 (5%)
Query: 711 TKQYVPGAPPQN--VSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETG-RSDSEAS 767
+ P + P++ V ++ +SW+PP +NG I Y L + +
Sbjct: 3 SGSSGPTSAPKDLTVITREGKPRAVIVSWQPP--LEANGKITAYILFYTLDKNIPIDDWI 60
Query: 768 IVTLK-NQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDP 816
+ T+ ++ + + +L T Y + A S G GP S PI RT +
Sbjct: 61 METISGDRLTHQIMDLNLDTMYYFRIQARNSKGVGPLSDPILFRTLKVSG 110
Score = 72.4 bits (178), Expect = 1e-15
Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 18/106 (16%)
Query: 288 TTGETEPGTAPRDVQV--RPLSSSTMVIQWDEPETPNGQIT----------------AKH 329
++G + P +AP+D+ V R +++ W P NG+IT
Sbjct: 2 SSGSSGPTSAPKDLTVITREGKPRAVIVSWQPPLEANGKITAYILFYTLDKNIPIDDWIM 61
Query: 330 HRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQ 375
G T+ + L +T+YY + A++ +G G + PI RT +
Sbjct: 62 ETISGDRLTHQIMDLNLDTMYYFRIQARNSKGVGPLSDPILFRTLK 107
Score = 66.6 bits (163), Expect = 2e-13
Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 8/102 (7%)
Query: 201 PVAPLDVKIS--EVTATSVRLDWTYPSET---LLYYVIQYKPKAANTPYSEISGIIT--- 252
AP D+ + E +V + W P E + Y++ Y I I+
Sbjct: 9 TSAPKDLTVITREGKPRAVIVSWQPPLEANGKITAYILFYTLDKNIPIDDWIMETISGDR 68
Query: 253 TYYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEP 294
+ + +L+ T Y F I A N+ G GP S P + T +
Sbjct: 69 LTHQIMDLNLDTMYYFRIQARNSKGVGPLSDPILFRTLKVSG 110
Score = 58.6 bits (142), Expect = 1e-10
Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 6/101 (5%)
Query: 622 AKPRDLRAVDIQ--ETAVTLAWSKPTHSGENIISYELYW----NDTYAKAKHHRRIGLVE 675
+ P+DL + + AV ++W P + I +Y L++ N G
Sbjct: 10 SAPKDLTVITREGKPRAVIVSWQPPLEANGKITAYILFYTLDKNIPIDDWIMETISGDRL 69
Query: 676 TYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVP 716
T+ + L +T+YY + A++ +G G + PI RT +
Sbjct: 70 THQIMDLNLDTMYYFRIQARNSKGVGPLSDPILFRTLKVSG 110
Score = 49.3 bits (118), Expect = 2e-07
Identities = 26/119 (21%), Positives = 42/119 (35%), Gaps = 25/119 (21%)
Query: 795 GTSIGDGPSSYP--ITIRTHEDDPSEVC-----PTQND---------FRKNKKTNGSNFK 838
G+S GP+S P +T+ T E P V P + + + +K ++
Sbjct: 1 GSSGSSGPTSAPKDLTVITREGKPRAVIVSWQPPLEANGKITAYILFYTLDKNIPIDDWI 60
Query: 839 GGYLNDPMRFDVSDGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKTPGGVP 897
+ G L + L DT+Y ++ A KG G S P +T
Sbjct: 61 ---------METISGDRLTHQIMDLNLDTMYYFRIQARNSKGVGPLSDPILFRTLKVSG 110
Score = 42.8 bits (101), Expect = 5e-05
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 26 GYILVTEPGTAPRDVQV--RPLSSSTMVIQWDEPETPNGQIT 65
G + P +AP+D+ V R +++ W P NG+IT
Sbjct: 1 GSSGSSGPTSAPKDLTVITREGKPRAVIVSWQPPLEANGKIT 42
Score = 32.7 bits (75), Expect = 0.14
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 447 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEP 481
L +T+YY + A++ +G G + PI RT +
Sbjct: 76 LNLDTMYYFRIQARNSKGVGPLSDPILFRTLKVSG 110
>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 130
Score = 119 bits (300), Expect = 8e-32
Identities = 31/126 (24%), Positives = 60/126 (47%), Gaps = 3/126 (2%)
Query: 458 AAQSPRGEGA-TTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYK 516
+ G+G+ + PPI RT PG P + + ++++ + W P PNG I Y+
Sbjct: 4 GSSGRIGDGSPSHPPILERTLDDVPG-PPMGILFPEVRTTSVRLIWQPPAAPNGIILAYQ 62
Query: 517 VYYTQDQSLPMSAWETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQ 576
+ + + + +A + + + T + L P ++Y R+ A T G G + ++V T+
Sbjct: 63 ITHRLNTTTANTATVEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVTTE 122
Query: 577 Q-GVPS 581
+ PS
Sbjct: 123 KRSGPS 128
Score = 110 bits (277), Expect = 1e-28
Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 5/126 (3%)
Query: 693 AAQSPRGEGA-TTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVY 751
+ G+G+ + PPI RT VPG PP + + +TS+R+ W+PP NG I+
Sbjct: 4 GSSGRIGDGSPSHPPILERTLDDVPG-PPMGILFPEVRTTSVRLIWQPP--AAPNGIILA 60
Query: 752 YKLQFVETGRSDSEASIVTLK-NQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIR 810
Y++ + + A++ L + + LK + Y + A T G G ++ + +
Sbjct: 61 YQITHRLNTTTANTATVEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVT 120
Query: 811 THEDDP 816
T +
Sbjct: 121 TEKRSG 126
Score = 90.2 bits (224), Expect = 2e-21
Identities = 28/120 (23%), Positives = 48/120 (40%), Gaps = 17/120 (14%)
Query: 272 AVNNLGRGPPSSPAV-ITTGETEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQIT---- 326
+ +G G PS P + T + PG P + + ++++ + W P PNG I
Sbjct: 5 SSGRIGDGSPSHPPILERTLDDVPG-PPMGILFPEVRTTSVRLIWQPPAAPNGIILAYQI 63
Query: 327 -----------AKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQ 375
A Y+ TGL P ++Y + AQ+ +G G + V T++
Sbjct: 64 THRLNTTTANTATVEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVTTEK 123
Score = 80.9 bits (200), Expect = 3e-18
Identities = 30/166 (18%), Positives = 54/166 (32%), Gaps = 41/166 (24%)
Query: 556 VQAFTSVGPGPLS-APVLVKTQQGVPSQPRDLRAVDIQETAVTLAWSKPTHSGENIISYE 614
+ +G G S P+L +T VP P + +++ T+V L W P I++Y+
Sbjct: 3 SGSSGRIGDGSPSHPPILERTLDDVPGPPMGILFPEVRTTSVRLIWQPPAAPNGIILAYQ 62
Query: 615 LYWNDTYAKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLV 674
+ + T + + Y
Sbjct: 63 IT---------------HRLNTTTANTATVEVLAPSARQYTA------------------ 89
Query: 675 ETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPP 720
TGL P ++Y + AQ+ +G G + V T++ P
Sbjct: 90 -----TGLKPESVYLFRITAQTRKGWGEAAEALVVTTEK--RSGPS 128
Score = 77.1 bits (190), Expect = 5e-17
Identities = 32/129 (24%), Positives = 50/129 (38%), Gaps = 10/129 (7%)
Query: 172 TCIAASVLGV-IETSTIVKVQCKYAPLLTLPVAPLDVKISEVTATSVRLDWTYPSET--- 227
+ ++ +G + + + P P+ + EV TSVRL W P+
Sbjct: 2 SSGSSGRIGDGSPSHPPILERTLDDV----PGPPMGILFPEVRTTSVRLIWQPPAAPNGI 57
Query: 228 LLYYVIQYKP--KAANTPYSEISGIITTYYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPA 285
+L Y I ++ ANT E+ YT L P + Y F I A G G +
Sbjct: 58 ILAYQITHRLNTTTANTATVEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEAL 117
Query: 286 VITTGETEP 294
V+TT +
Sbjct: 118 VVTTEKRSG 126
Score = 59.0 bits (143), Expect = 1e-10
Identities = 29/118 (24%), Positives = 47/118 (39%), Gaps = 18/118 (15%)
Query: 794 AGTSIGDG-PSSYPITIRTHEDDPSEVC-PTQNDFRKN---------KKTNG-------S 835
+ IGDG PS PI RT +D P + R NG +
Sbjct: 5 SSGRIGDGSPSHPPILERTLDDVPGPPMGILFPEVRTTSVRLIWQPPAAPNGIILAYQIT 64
Query: 836 NFKGGYLNDPMRFDVSDGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKTP 893
+ + +V A + TGL+P+++Y ++ A TRKG G+ ++ + T
Sbjct: 65 HRLNTTTANTATVEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVTTE 122
Score = 43.9 bits (104), Expect = 3e-05
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 33 PGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITH 66
PG P + + ++++ + W P PNG I
Sbjct: 28 PG-PPMGILFPEVRTTSVRLIWQPPAAPNGIILA 60
Score = 32.8 bits (75), Expect = 0.15
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 447 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEP 481
L P ++Y + AQ+ +G G + V T++
Sbjct: 92 LKPESVYLFRITAQTRKGWGEAAEALVVTTEKRSG 126
Score = 27.7 bits (62), Expect = 8.6
Identities = 10/29 (34%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 873 VAALTRKGDGDRSKPE-TIKTPGGVPNRP 900
+ R GDG S P +T VP P
Sbjct: 3 SGSSGRIGDGSPSHPPILERTLDDVPGPP 31
>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes
(CDON)binding...; fibronectin type III, FN3; NMR {Mus
musculus} SCOP: b.1.2.1
Length = 114
Score = 118 bits (297), Expect = 2e-31
Identities = 24/111 (21%), Positives = 47/111 (42%), Gaps = 3/111 (2%)
Query: 476 TKQYEPGTAPRDVQVRPLSSSTMVIQWD--EPETPNGQITGYKVYYTQDQSLPMSAWETQ 533
+ P P ++ +T++++W N I G+ +YY S S ++
Sbjct: 3 SGSSGPVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKD 62
Query: 534 VVDNNQL-TTISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPSQP 583
+V+ ++ +IS L P T Y I++Q F G S ++ +T+
Sbjct: 63 MVEGDRYWHSISHLQPETSYDIKMQCFNEGGESEFSNVMICETKARSGPSS 113
Score = 99.5 bits (248), Expect = 6e-25
Identities = 19/108 (17%), Positives = 40/108 (37%), Gaps = 2/108 (1%)
Query: 711 TKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETG-RSDSEASIV 769
+ P A P + ++ T+I + W P +N I + + + T +DS+
Sbjct: 3 SGSSGPVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKD 62
Query: 770 TLK-NQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDP 816
++ ++ + L+ T Y I + G+ S + T
Sbjct: 63 MVEGDRYWHSISHLQPETSYDIKMQCFNEGGESEFSNVMICETKARSG 110
Score = 72.1 bits (177), Expect = 2e-15
Identities = 19/106 (17%), Positives = 36/106 (33%), Gaps = 18/106 (16%)
Query: 288 TTGETEPGTAPRDVQVRPLSSSTMVIQWD--EPETPNGQIT----------------AKH 329
++G + P P ++ +T++++W N I K
Sbjct: 2 SSGSSGPVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKK 61
Query: 330 HRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQ 375
G +S++ L P T Y I + + GE + + TK
Sbjct: 62 DMVEGDRYWHSISHLQPETSYDIKMQCFNEGGESEFSNVMICETKA 107
Score = 69.4 bits (170), Expect = 2e-14
Identities = 17/102 (16%), Positives = 36/102 (35%), Gaps = 8/102 (7%)
Query: 201 PVAPLDVKISEVTATSVRLDWTYPSET-----LLYYVIQYKPKAANTPYSEISGII---T 252
P V T++ L W Y + + + I Y+P ++ ++
Sbjct: 9 VAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDR 68
Query: 253 TYYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEP 294
++++ +L P T Y+ + N G S+ + T
Sbjct: 69 YWHSISHLQPETSYDIKMQCFNEGGESEFSNVMICETKARSG 110
Score = 58.3 bits (141), Expect = 2e-10
Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 7/104 (6%)
Query: 622 AKPRDLRAVDIQETAVTLAWSK--PTHSGENIISYELYW----NDTYAKAKHHRRIGLVE 675
A P + ET + L W +++ I + +Y+ +D + K G
Sbjct: 10 AGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDRY 69
Query: 676 TYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQ-YVPGA 718
+S++ L P T Y I + + GE + + TK P +
Sbjct: 70 WHSISHLQPETSYDIKMQCFNEGGESEFSNVMICETKARSGPSS 113
Score = 51.3 bits (123), Expect = 5e-08
Identities = 22/119 (18%), Positives = 41/119 (34%), Gaps = 25/119 (21%)
Query: 795 GTSIGDGPSSYPITIRTHEDDPSEV--------CPTQN--------DFRKNKKTNGSNFK 838
G+S GP + P T + + + N +R N S++K
Sbjct: 1 GSSGSSGPVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYK 60
Query: 839 GGYLNDPMRFDVSDGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKTPGGVP 897
D+ +G +++ LQP+T Y I++ G+ + S +T
Sbjct: 61 ---------KDMVEGDRYWHSISHLQPETSYDIKMQCFNEGGESEFSNVMICETKARSG 110
Score = 42.1 bits (99), Expect = 8e-05
Identities = 6/37 (16%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
Query: 32 EPGTAPRDVQVRPLSSSTMVIQWD--EPETPNGQITH 66
P P ++ +T++++W N I
Sbjct: 7 GPVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHG 43
Score = 34.0 bits (78), Expect = 0.053
Identities = 9/35 (25%), Positives = 13/35 (37%)
Query: 447 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEP 481
L P T Y I + + GE + + TK
Sbjct: 76 LQPETSYDIKMQCFNEGGESEFSNVMICETKARSG 110
>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER,
receptor tyrosine kinase mertk, FN3 domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 124
Score = 117 bits (296), Expect = 2e-31
Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 4/122 (3%)
Query: 464 GEGATTPPIPVRTKQYEPGTAPRDVQV-RPLSSSTMVIQWDEP--ETPNGQITGYKVYYT 520
G ++ I T + P AP +V V SS + I+W +P + +G++ GY++ +
Sbjct: 1 GSSGSSGWILASTTEGAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHV 60
Query: 521 QDQSLPMSAWETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKT-QQGV 579
+ +V N IS + T+R+ A T G GP S PV +
Sbjct: 61 WQSAGISKELLEEVGQNGSRARISVQVHNATCTVRIAAVTRGGVGPFSDPVKIFIPAHSG 120
Query: 580 PS 581
PS
Sbjct: 121 PS 122
Score = 112 bits (283), Expect = 2e-29
Identities = 27/120 (22%), Positives = 47/120 (39%), Gaps = 2/120 (1%)
Query: 699 GEGATTPPIPVRTKQYVPGAPPQNVSCE-PLSSTSIRISWEPPPVERSNGHIVYYKLQFV 757
G ++ I T + P P NV+ SS ++ I W PP ++ +G +V Y++ V
Sbjct: 1 GSSGSSGWILASTTEGAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHV 60
Query: 758 ETGRSDSEASIVTLK-NQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDP 816
S+ + + N + + + + A T G GP S P+ I
Sbjct: 61 WQSAGISKELLEEVGQNGSRARISVQVHNATCTVRIAAVTRGGVGPFSDPVKIFIPAHSG 120
Score = 72.9 bits (179), Expect = 1e-15
Identities = 21/115 (18%), Positives = 39/115 (33%), Gaps = 18/115 (15%)
Query: 277 GRGPPSSPAVITTGETEPGTAPRDVQV-RPLSSSTMVIQWDEP--ETPNGQIT------- 326
G S + +T E P AP +V V SS + I+W +P + +G++
Sbjct: 1 GSSGSSGWILASTTEGAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHV 60
Query: 327 --------AKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRT 373
++ N + +AA + G G + P+ +
Sbjct: 61 WQSAGISKELLEEVGQNGSRARISVQVHNATCTVRIAAVTRGGVGPFSDPVKIFI 115
Score = 56.7 bits (137), Expect = 8e-10
Identities = 21/105 (20%), Positives = 38/105 (36%), Gaps = 9/105 (8%)
Query: 202 VAPLDVKISE-VTATSVRLDWTYPSET-----LLYYVIQYKPKAANTPYSEISGII--TT 253
VAPL+V + ++ +V + W P L+ Y I + ++A + + +
Sbjct: 20 VAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHVWQSAGISKELLEEVGQNGS 79
Query: 254 YYTVRNLSPYTEYEFYIIAVNNLGRGPPSSP-AVITTGETEPGTA 297
+ I AV G GP S P + + P +
Sbjct: 80 RARISVQVHNATCTVRIAAVTRGGVGPFSDPVKIFIPAHSGPSSG 124
Score = 56.3 bits (136), Expect = 1e-09
Identities = 25/123 (20%), Positives = 35/123 (28%), Gaps = 27/123 (21%)
Query: 799 GDGPSSYPITIRTHEDDPSEVCPTQNDFRKN---------------KKTNGSNFKGGY-- 841
G SS I T E PS P N K+ +G GY
Sbjct: 1 GSSGSSGWILASTTEGAPSVA-PLNVTVFLNESSDNVDIRWMKPPTKQQDGELV--GYRI 57
Query: 842 -------LNDPMRFDVSDGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKTPG 894
+ ++ + T+++AA+TR G G S P I P
Sbjct: 58 SHVWQSAGISKELLEEVGQNGSRARISVQVHNATCTVRIAAVTRGGVGPFSDPVKIFIPA 117
Query: 895 GVP 897
Sbjct: 118 HSG 120
Score = 53.3 bits (128), Expect = 1e-08
Identities = 21/166 (12%), Positives = 45/166 (27%), Gaps = 49/166 (29%)
Query: 563 GPGPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYA 622
G S +L T +G PS
Sbjct: 1 GSSGSSGWILASTTEGAPSVA--------------------------------------- 21
Query: 623 KPRDLRA-VDIQETAVTLAWSKPTHSGEN--IISYELYW---NDTYAKAKHHRRIGLVET 676
P ++ ++ V + W KP ++ ++ Y + + +K
Sbjct: 22 -PLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHVWQSAGISKELLEEVGQNGSR 80
Query: 677 YSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQN 722
++ N + +AA + G G + P+ + + P +
Sbjct: 81 ARISVQVHNATCTVRIAAVTRGGVGPFSDPVKIFIP---AHSGPSS 123
Score = 35.9 bits (83), Expect = 0.010
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 19 PLPPLIPGYILVTEPGTAPRDVQV-RPLSSSTMVIQWDEP--ETPNGQIT 65
I P AP +V V SS + I+W +P + +G++
Sbjct: 4 GSSGWILASTTEGAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELV 53
Score = 28.2 bits (63), Expect = 4.7
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 447 LYPNTLYYIWLAAQSPRGEGATTPPIPVRT 476
N + +AA + G G + P+ +
Sbjct: 86 QVHNATCTVRIAAVTRGGVGPFSDPVKIFI 115
>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold,
fibronectin type III, NG-CAM related cell adhesion
molecule, structural genomics; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 125
Score = 117 bits (295), Expect = 4e-31
Identities = 25/121 (20%), Positives = 51/121 (42%), Gaps = 7/121 (5%)
Query: 704 TPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETG--- 760
+ + + +P P NV ++ST + W+P P++ GH+ Y++ + +T
Sbjct: 2 SSGSSGHSGEDLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSS 61
Query: 761 ----RSDSEASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDP 816
R + + ++T +L L+ ++ Y + V G+GP+S T E
Sbjct: 62 KRNRRHIEKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNTPEGSG 121
Query: 817 S 817
Sbjct: 122 P 122
Score = 108 bits (271), Expect = 7e-28
Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 8/121 (6%)
Query: 469 TPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEP--ETPNGQITGYKVYYTQDQSLP 526
+ + + P AP +V+V ++S+ + WD ++ G + GY++YY + QS
Sbjct: 2 SSGSSGHSGEDLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSS 61
Query: 527 MSAW-----ETQVVDNNQL-TTISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVP 580
+ ++ + L P + YT+ V+ G GP S + T +G
Sbjct: 62 KRNRRHIEKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNTPEGSG 121
Query: 581 S 581
Sbjct: 122 P 122
Score = 74.4 bits (183), Expect = 5e-16
Identities = 25/117 (21%), Positives = 43/117 (36%), Gaps = 23/117 (19%)
Query: 282 SSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEP--ETPNGQIT------------- 326
SS + +GE P AP +V+V ++S+ + WD ++ G +
Sbjct: 2 SSGSSGHSGEDLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSS 61
Query: 327 --------AKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQ 375
K G L GL P + Y + + + +GEG +P T +
Sbjct: 62 KRNRRHIEKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNTPE 118
Score = 65.1 bits (159), Expect = 7e-13
Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 13/109 (11%)
Query: 202 VAPLDVKISEVTATSVRLDWTYPSET-----LLYYVIQYKPKAANTPYSEISGII----- 251
VAP +V+++ V +T + W L Y I Y +++ +
Sbjct: 16 VAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKKILTF 75
Query: 252 ---TTYYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTA 297
T+ + L P++ Y + VN G GP S V T E ++
Sbjct: 76 QGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNTPEGSGPSS 124
Score = 60.1 bits (146), Expect = 4e-11
Identities = 22/156 (14%), Positives = 45/156 (28%), Gaps = 37/156 (23%)
Query: 568 SAPVLVKTQQGVPSQ-PRDLRAVDIQETAVTLAWSKPTHSGEN--IISYEL-YWNDTYAK 623
S+ + + +P P ++R + T + W + Y + YW +
Sbjct: 2 SSGSSGHSGEDLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSS 61
Query: 624 PRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVETYSLTGLY 683
R+ R ++ + G L GL
Sbjct: 62 KRNRRHIEKKILTFQ---------------------------------GSKTHGMLPGLE 88
Query: 684 PNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAP 719
P + Y + + + +GEG +P T + +
Sbjct: 89 PFSHYTLNVRVVNGKGEGPASPDRVFNTPEGSGPSS 124
Score = 57.8 bits (140), Expect = 3e-10
Identities = 16/67 (23%), Positives = 25/67 (37%)
Query: 831 KTNGSNFKGGYLNDPMRFDVSDGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETI 890
S+ K + + G + GL+P + YT+ V + KG+G S
Sbjct: 55 WKTQSSSKRNRRHIEKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVF 114
Query: 891 KTPGGVP 897
TP G
Sbjct: 115 NTPEGSG 121
Score = 39.7 bits (93), Expect = 6e-04
Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 32 EPGTAPRDVQVRPLSSSTMVIQWDEP--ETPNGQIT 65
P AP +V+V ++S+ + WD ++ G +
Sbjct: 13 LPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQ 48
Score = 35.9 bits (83), Expect = 0.015
Identities = 11/75 (14%), Positives = 22/75 (29%)
Query: 410 YYIWLAAQSPRGEGATTPPIPVRTKQYGKTPGFGEQALYPNTLYYIWLAAQSPRGEGATT 469
Y I+ + G L P + Y + + + +GEG +
Sbjct: 50 YRIYYWKTQSSSKRNRRHIEKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPAS 109
Query: 470 PPIPVRTKQYEPGTA 484
P T + ++
Sbjct: 110 PDRVFNTPEGSGPSS 124
>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor;
2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A
1lwr_A
Length = 209
Score = 120 bits (302), Expect = 5e-31
Identities = 32/198 (16%), Positives = 69/198 (34%), Gaps = 24/198 (12%)
Query: 195 APL--LTLPVAPLDVKISEVTATSVRLDWTYPSET----LLYYVIQYKPKAANTPYSEI- 247
APL P +P + E +++ ++ + P T +L Y +++ +S+
Sbjct: 1 APLAQADTPSSP-SIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWY 59
Query: 248 ---SGIITTYYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVR 304
+ T+ L P T Y + A+N G G S+ + T +AP+
Sbjct: 60 DAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKLEGQM 119
Query: 305 PLSSSTMVIQWDEPETPNGQIT-------------AKHHRRIGLVETYSLTGLYPNTLYY 351
+++ + + + I R + L L N Y
Sbjct: 120 GEDGNSIKVNLIKQDDGGSPIRHYLVRYRALSSEWKPEIRLPSGSDHVMLKSLDWNAEYE 179
Query: 352 IWLAAQSPRGEGATTPPI 369
+++ A++ +G+ +
Sbjct: 180 VYVVAENQQGKSKAAHFV 197
Score = 114 bits (288), Expect = 4e-29
Identities = 47/235 (20%), Positives = 78/235 (33%), Gaps = 45/235 (19%)
Query: 477 KQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQ-ITGYKVYYTQDQS-LPMSAWETQV 534
Q + ++P QV P SST +Q+DEPE G I YK + + S W
Sbjct: 4 AQADTPSSPSIDQVEP-YSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAK 62
Query: 535 VDNNQLT-TISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQ-QGVPSQPRDLRAVDIQ 592
+ + TI L P T Y +R+ A G G +SA KTQ PS P+ +
Sbjct: 63 EASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKLEGQMGED 122
Query: 593 ETAVTLAWSKPTHSGENIISYELYWNDTYAKPRDLRAVDIQETAVTLAWSKPTHSGENII 652
++ + K G I Y + + ++ + +
Sbjct: 123 GNSIKVNLIKQDDGGSPIRHYLVRYRALSSEWKPEIRLPSGSD----------------- 165
Query: 653 SYELYWNDTYAKAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPI 707
L L N Y +++ A++ +G+ +
Sbjct: 166 -----------------------HVMLKSLDWNAEYEVYVVAENQQGKSKAAHFV 197
Score = 107 bits (270), Expect = 8e-27
Identities = 32/188 (17%), Positives = 74/188 (39%), Gaps = 9/188 (4%)
Query: 627 LRAVDIQETAVTLAWSKPTHS-GENIISYELYW----NDTYAKAKHHRRIGLVET-YSLT 680
+ V+ + + + +P + G I+ Y+ W + + + + +E ++
Sbjct: 14 IDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIV 73
Query: 681 GLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPP 740
GL P T Y + LAA + +G G + +T+ + P+ SI+++
Sbjct: 74 GLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKLEGQMGEDGNSIKVNLIKQ 133
Query: 741 PVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSIGD 800
+ I +Y +++ S+ + I +L L EY ++V+A G
Sbjct: 134 --DDGGSPIRHYLVRYRALS-SEWKPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQGK 190
Query: 801 GPSSYPIT 808
+++ +
Sbjct: 191 SKAAHFVF 198
Score = 98.3 bits (245), Expect = 2e-23
Identities = 24/127 (18%), Positives = 46/127 (36%), Gaps = 6/127 (4%)
Query: 447 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPE 506
L P T Y + LAA + +G G + +T+ +AP+ +++ + + +
Sbjct: 75 LKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKLEGQMGEDGNSIKVNLIKQD 134
Query: 507 TPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLT--TISDLTPHTIYTIRVQAFTSVGP 564
I Y V Y S W+ ++ + + L + Y + V A G
Sbjct: 135 DGGSPIRHYLVRYRALS----SEWKPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQGK 190
Query: 565 GPLSAPV 571
+ V
Sbjct: 191 SKAAHFV 197
Score = 85.3 bits (211), Expect = 7e-19
Identities = 34/214 (15%), Positives = 64/214 (29%), Gaps = 31/214 (14%)
Query: 711 TKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNG--HIVYYKLQFVETGRSDSEASI 768
+ P P EP S++ ++ ++ P + G I+ YK ++ G +
Sbjct: 4 AQADTPS-SPSIDQVEP-YSSTAQVQFDEP---EATGGVPILKYKAEWRAVGEEVWHSKW 58
Query: 769 VTLK---NQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDPSEVCPTQND 825
K + + LK T Y + + A G G S +T P
Sbjct: 59 YDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPS-APKLEG 117
Query: 826 FRKNKKT-----------NGSNFKGGYL-------NDPMRFDVSDGGALELNVTGLQPDT 867
GS + YL ++ G+ + + L +
Sbjct: 118 QMGEDGNSIKVNLIKQDDGGSPIR-HYLVRYRALSSEWKPEIRLPSGSDHVMLKSLDWNA 176
Query: 868 IYTIQVAALTRKGDGDRSKPETIKTPGGVPNRPH 901
Y + V A ++G + +T + H
Sbjct: 177 EYEVYVVAENQQGKSKAAHF-VFRTAAAHHHHHH 209
Score = 77.5 bits (191), Expect = 3e-16
Identities = 19/119 (15%), Positives = 46/119 (38%), Gaps = 6/119 (5%)
Query: 174 IAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISEVTATSVRLDWTYPSE---TLLY 230
A + G+ E S + + + P AP S++++ + + +
Sbjct: 86 AALNGKGLGEISAASEFKT---QPVREPSAPKLEGQMGEDGNSIKVNLIKQDDGGSPIRH 142
Query: 231 YVIQYKPKAANTPYSEISGIITTYYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITT 289
Y+++Y+ ++ + + +++L EYE Y++A N G+ + T
Sbjct: 143 YLVRYRALSSEWKPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQGKSKAAHFVFRTA 201
Score = 32.5 bits (74), Expect = 0.37
Identities = 4/35 (11%), Positives = 12/35 (34%)
Query: 32 EPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITH 66
+AP+ +++ + + + I H
Sbjct: 108 REPSAPKLEGQMGEDGNSIKVNLIKQDDGGSPIRH 142
Score = 29.4 bits (66), Expect = 4.5
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 30 VTEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQ-ITH 66
+ ++P QV P SST +Q+DEPE G I
Sbjct: 5 QADTPSSPSIDQVEP-YSSTAQVQFDEPEATGGVPILK 41
>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 116
Score = 116 bits (292), Expect = 7e-31
Identities = 37/118 (31%), Positives = 59/118 (50%), Gaps = 6/118 (5%)
Query: 699 GEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVE 758
G ++ + + + +PG P N+ S TSI ++WE P NG I YKL ++E
Sbjct: 1 GSSGSSGRVETQPEVQLPG-PAPNLRAYAASPTSITVTWETP--VSGNGEIQNYKLYYME 57
Query: 759 TGRSDSEASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDP 816
G +D E + + S+ ++ LKK+TEY V+A G G S+ + +RT D
Sbjct: 58 KG-TDKEQDVDV--SSHSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDVAVRTLSDSG 112
Score = 114 bits (288), Expect = 3e-30
Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 7/118 (5%)
Query: 464 GEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQ 523
G ++ + + + PG +++ S +++ + W+ P + NG+I YK+YY +
Sbjct: 1 GSSGSSGRVETQPEVQLPG-PAPNLRAYAASPTSITVTWETPVSGNGEIQNYKLYYMEKG 59
Query: 524 SLPMSAWETQVVDNNQLT-TISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVP 580
+ + Q VD + + TI+ L +T Y+ RV A+ GPG + V V+T
Sbjct: 60 T-----DKEQDVDVSSHSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDVAVRTLSDSG 112
Score = 85.5 bits (212), Expect = 5e-20
Identities = 24/110 (21%), Positives = 41/110 (37%), Gaps = 12/110 (10%)
Query: 277 GRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITA--------- 327
G S PG +++ S +++ + W+ P + NG+I
Sbjct: 1 GSSGSSGRVETQPEVQLPG-PAPNLRAYAASPTSITVTWETPVSGNGEIQNYKLYYMEKG 59
Query: 328 --KHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQ 375
K +Y++ GL T Y + A + G G +TP + VRT
Sbjct: 60 TDKEQDVDVSSHSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDVAVRTLS 109
Score = 80.1 bits (198), Expect = 4e-18
Identities = 31/158 (19%), Positives = 51/158 (32%), Gaps = 44/158 (27%)
Query: 563 GPGPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYA 622
G S V + + +P +LRA T++T+ W P I +Y+LY+ +
Sbjct: 1 GSSGSSGRVETQPEVQLPGPAPNLRAYAASPTSITVTWETPVSGNGEIQNYKLYYMEKGT 60
Query: 623 KPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVETYSLTGL 682
+ VD+ +Y++ GL
Sbjct: 61 DKE--QDVDVSSH----------------------------------------SYTINGL 78
Query: 683 YPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPP 720
T Y + A + G G +TP + VRT P
Sbjct: 79 KKYTEYSFRVVAYNKHGPGVSTPDVAVRTLSDSG--PS 114
Score = 75.1 bits (185), Expect = 2e-16
Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 9/114 (7%)
Query: 184 TSTIVKVQCKYAPLLTLPVAPLDVKISEVTATSVRLDWTYPSET---LLYYVIQYKPKAA 240
+S V+ Q P + LP +++ + TS+ + W P + Y + Y K
Sbjct: 5 SSGRVETQ----PEVQLPGPAPNLRAYAASPTSITVTWETPVSGNGEIQNYKLYYMEK-- 58
Query: 241 NTPYSEISGIITTYYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEP 294
T + + + YT+ L YTEY F ++A N G G + + T
Sbjct: 59 GTDKEQDVDVSSHSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDVAVRTLSDSG 112
Score = 48.5 bits (116), Expect = 4e-07
Identities = 18/115 (15%), Positives = 30/115 (26%), Gaps = 19/115 (16%)
Query: 799 GDGPSSYPITIRTHEDDPSEVC-PTQNDFRKN---------KKTNGS------NFKGGYL 842
G SS + + P NG +
Sbjct: 1 GSSGSSGRVETQPEVQLPGPAPNLRAYAASPTSITVTWETPVSGNGEIQNYKLYYMEKGT 60
Query: 843 NDPMRFDVSDGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKTPGGVP 897
+ DVS + GL+ T Y+ +V A + G G + ++T
Sbjct: 61 DKEQDVDVSS---HSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDVAVRTLSDSG 112
Score = 41.5 bits (98), Expect = 1e-04
Identities = 6/31 (19%), Positives = 17/31 (54%)
Query: 36 APRDVQVRPLSSSTMVIQWDEPETPNGQITH 66
+++ S +++ + W+ P + NG+I +
Sbjct: 20 PAPNLRAYAASPTSITVTWETPVSGNGEIQN 50
Score = 36.2 bits (84), Expect = 0.009
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 447 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQ 478
L T Y + A + G G +TP + VRT
Sbjct: 78 LKKYTEYSFRVVAYNKHGPGVSTPDVAVRTLS 109
>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding;
2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
PDB: 2ibb_A
Length = 214
Score = 119 bits (300), Expect = 1e-30
Identities = 33/211 (15%), Positives = 68/211 (32%), Gaps = 36/211 (17%)
Query: 201 PVAPLDVKISEVTATSVRLDWTYPSET---LLYYVIQYKPKAANTPYSEISGII------ 251
P ++ ++ SV L W P ++ + +QY+ + + I
Sbjct: 2 TYPPTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPK 61
Query: 252 -------TTYYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPA----VITTGETEPGTAPRD 300
+ +V +L P Y F I+AV + S+ + + +P P
Sbjct: 62 WNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPEL 121
Query: 301 VQVRPLSSSTMVIQWDEPETPNG-QIT---------------AKHHRRIGLVETYSLTGL 344
+++ S + +V+ W + IT K ++ + L
Sbjct: 122 LEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHARSFKIAPL 181
Query: 345 YPNTLYYIWLAAQSPRGEGATTPPIPVRTKQ 375
T+Y L + S + RT++
Sbjct: 182 ETATMYEFKLQSFSAASASEFSALKQGRTQR 212
Score = 113 bits (284), Expect = 1e-28
Identities = 36/207 (17%), Positives = 67/207 (32%), Gaps = 20/207 (9%)
Query: 624 PRDLRAVDIQETAVTLAWSKPTHSGENIISYELY---------W-----NDTYAKAKHHR 669
P + + +V L W P + G I+ +++ W N Y K K +
Sbjct: 5 PTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNS 64
Query: 670 RIGLVETYSLTGLYPNTLYYIWLAAQSPRGEG----ATTPPIPVRTKQYVPGAPPQNVSC 725
+G T S+T L P Y + A + + P P+ +
Sbjct: 65 ELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPELLEI 124
Query: 726 EPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETG-RSDSEASIVTLKNQTSFVLDELKK 784
E S T++ + W I Y + + + + + + SF + L+
Sbjct: 125 EEYSETAVVLHWSLASDAD-EHLITGYYAYYRPSSSAGEYFKATIEGAHARSFKIAPLET 183
Query: 785 WTEYRIWVLAGTSIGDGPSSYPITIRT 811
T Y + + ++ S RT
Sbjct: 184 ATMYEFKLQSFSAASASEFSALKQGRT 210
Score = 104 bits (260), Expect = 2e-25
Identities = 26/138 (18%), Positives = 49/138 (35%), Gaps = 9/138 (6%)
Query: 447 LYPNTLYYIWLAAQSPRGEG----ATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQW 502
L P Y + A + + +P P +++ S + +V+ W
Sbjct: 77 LKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPELLEIEEYSETAVVLHW 136
Query: 503 DEPETPNG-QITGYKVYYTQDQSLPMSAWETQVVDNNQLT--TISDLTPHTIYTIRVQAF 559
+ ITGY YY S + ++ I+ L T+Y ++Q+F
Sbjct: 137 SLASDADEHLITGYYAYYRPSSS--AGEYFKATIEGAHARSFKIAPLETATMYEFKLQSF 194
Query: 560 TSVGPGPLSAPVLVKTQQ 577
++ SA +TQ+
Sbjct: 195 SAASASEFSALKQGRTQR 212
Score = 89.1 bits (221), Expect = 4e-20
Identities = 44/245 (17%), Positives = 76/245 (31%), Gaps = 53/245 (21%)
Query: 485 PRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYY----------TQDQSLPMSAWETQV 534
P V LS +++++W P I +KV Y T + ++P +
Sbjct: 5 PTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNS 64
Query: 535 VDNNQLT-TISDLTPHTIYTIRVQAFTSVGPGPLSAPV-LVKTQQGVPSQPRDLRAVDIQ 592
T +++DL P Y R+ A S S Q G P
Sbjct: 65 ELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDP--------- 115
Query: 593 ETAVTLAWSKPTHSGENIISYELYWNDTYAKPRDLRAVDIQETAVTLAWSKPTHSGEN-I 651
P L + ETAV L WS + + E+ I
Sbjct: 116 ----------------------------MPVPELLEIEEYSETAVVLHWSLASDADEHLI 147
Query: 652 ISYELYWNDTYAKAKHHRRI---GLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIP 708
Y Y+ + + ++ + ++ + L T+Y L + S +
Sbjct: 148 TGYYAYYRPSSSAGEYFKATIEGAHARSFKIAPLETATMYEFKLQSFSAASASEFSALKQ 207
Query: 709 VRTKQ 713
RT++
Sbjct: 208 GRTQR 212
Score = 82.2 bits (203), Expect = 8e-18
Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 6/107 (5%)
Query: 189 KVQCKYAPLLTLPVAPLDVKISEVTATSVRLDWTYPSET----LLYYVIQYKPKAANTPY 244
K + L P ++I E + T+V L W+ S+ + Y Y+P ++ Y
Sbjct: 104 KFYLQPGAALDPMPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEY 163
Query: 245 S--EISGIITTYYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITT 289
I G + + L T YEF + + + S+ T
Sbjct: 164 FKATIEGAHARSFKIAPLETATMYEFKLQSFSAASASEFSALKQGRT 210
Score = 77.2 bits (190), Expect = 4e-16
Identities = 32/210 (15%), Positives = 64/210 (30%), Gaps = 37/210 (17%)
Query: 718 APPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDS------------E 765
PP + LS S+ + W P IV +K+Q+ G+ +
Sbjct: 3 YPPTPPNVTRLSDESVMLRWMVP--RNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKP 60
Query: 766 ASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDGP---SSYPITIRTHEDDPSEVCPT 822
L + + +LK YR +LA S D +S ++ P
Sbjct: 61 KWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPE 120
Query: 823 QNDFRKNKKT-----------NGSNFKGGYL---------NDPMRFDVSDGGALELNVTG 862
+ + +T + GY + + + A +
Sbjct: 121 LLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHARSFKIAP 180
Query: 863 LQPDTIYTIQVAALTRKGDGDRSKPETIKT 892
L+ T+Y ++ + + + S + +T
Sbjct: 181 LETATMYEFKLQSFSAASASEFSALKQGRT 210
Score = 37.5 bits (87), Expect = 0.009
Identities = 5/32 (15%), Positives = 13/32 (40%)
Query: 32 EPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQ 63
+P P +++ S + +V+ W +
Sbjct: 114 DPMPVPELLEIEEYSETAVVLHWSLASDADEH 145
Score = 29.0 bits (65), Expect = 6.1
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 37 PRDVQVRPLSSSTMVIQWDEPETPNGQIT 65
P V LS +++++W P I
Sbjct: 5 PTPPNVTRLSDESVMLRWMVPRNDGLPIV 33
>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites,
calcium, cell adhesion molecules, cell cycle cell LINE,
conserved sequence; 1.60A {Homo sapiens} PDB: 3d1m_C
3n1q_C 3n1m_C 3n1g_C 3n1p_C
Length = 102
Score = 114 bits (288), Expect = 2e-30
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
Query: 481 PGTAPRDVQVRPLSSSTMVIQWDEP--ETPNGQITGYKVYYTQDQSLPMSAWETQVVDNN 538
P T P +S + ++++W N I G+ +YY S S ++ VV+ +
Sbjct: 4 PITGPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVEGS 63
Query: 539 QLT-TISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQ 576
+ I L P T Y I++Q F G S ++ +T+
Sbjct: 64 KQWHMIGHLQPETSYDIKMQCFNEGGESEFSNVMICETK 102
Score = 106 bits (267), Expect = 1e-27
Identities = 20/99 (20%), Positives = 38/99 (38%), Gaps = 2/99 (2%)
Query: 715 VPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGR-SDSEASIVTLK- 772
P P E +S T I + W P +N I + + + T +DS+ ++
Sbjct: 3 TPITGPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVEG 62
Query: 773 NQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRT 811
++ ++ L+ T Y I + G+ S + T
Sbjct: 63 SKQWHMIGHLQPETSYDIKMQCFNEGGESEFSNVMICET 101
Score = 70.1 bits (172), Expect = 7e-15
Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 8/95 (8%)
Query: 203 APLDVKISEVTATSVRLDWTYPSET-----LLYYVIQYKPKAANTPYSEISGII---TTY 254
P V+ T + L WTY + + + I Y+P ++ ++ +
Sbjct: 7 GPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVEGSKQW 66
Query: 255 YTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITT 289
+ + +L P T Y+ + N G S+ + T
Sbjct: 67 HMIGHLQPETSYDIKMQCFNEGGESEFSNVMICET 101
Score = 68.6 bits (168), Expect = 3e-14
Identities = 18/99 (18%), Positives = 31/99 (31%), Gaps = 18/99 (18%)
Query: 294 PGTAPRDVQVRPLSSSTMVIQWDEP--ETPNGQIT----------------AKHHRRIGL 335
P T P +S + ++++W N I K G
Sbjct: 4 PITGPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVEGS 63
Query: 336 VETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTK 374
+ + + L P T Y I + + GE + + TK
Sbjct: 64 KQWHMIGHLQPETSYDIKMQCFNEGGESEFSNVMICETK 102
Score = 59.7 bits (145), Expect = 4e-11
Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 6/97 (6%)
Query: 622 AKPRDLRAVDIQETAVTLAWSKPTHSGEN--IISYELYW----NDTYAKAKHHRRIGLVE 675
P + +T + L W+ S N I + +Y+ +D + K G +
Sbjct: 6 TGPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVEGSKQ 65
Query: 676 TYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTK 712
+ + L P T Y I + + GE + + TK
Sbjct: 66 WHMIGHLQPETSYDIKMQCFNEGGESEFSNVMICETK 102
Score = 49.7 bits (119), Expect = 1e-07
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 849 DVSDGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKT 892
DV +G + LQP+T Y I++ G+ + S +T
Sbjct: 58 DVVEGSKQWHMIGHLQPETSYDIKMQCFNEGGESEFSNVMICET 101
Score = 42.4 bits (100), Expect = 5e-05
Identities = 7/36 (19%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Query: 33 PGTAPRDVQVRPLSSSTMVIQWDEP--ETPNGQITH 66
P T P +S + ++++W N I
Sbjct: 4 PITGPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQG 39
Score = 34.7 bits (80), Expect = 0.021
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 447 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTK 477
L P T Y I + + GE + + TK
Sbjct: 72 LQPETSYDIKMQCFNEGGESEFSNVMICETK 102
>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 119
Score = 115 bits (289), Expect = 2e-30
Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 464 GEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQ 523
G ++ + + P APRDV +SS + + W P G I + V+++++
Sbjct: 1 GSSGSSGKPAIPSSSVLPS-APRDVVPVLVSSRFVRLSWRPPAEAKGNIQTFTVFFSREG 59
Query: 524 SLPMSAWETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPSQP 583
A T + QL T+ +L P +YT RV A+ GPG S P+ V TQ
Sbjct: 60 DNRERALNTTQPGSLQL-TVGNLKPEAMYTFRVVAYNEWGPGESSQPIKVATQPESGPSS 118
Score = 99.4 bits (248), Expect = 6e-25
Identities = 29/118 (24%), Positives = 48/118 (40%), Gaps = 3/118 (2%)
Query: 699 GEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVE 758
G ++ + + +P P++V +SS +R+SW PP + G+I + + F
Sbjct: 1 GSSGSSGKPAIPSSSVLPS-APRDVVPVLVSSRFVRLSWRPP--AEAKGNIQTFTVFFSR 57
Query: 759 TGRSDSEASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDP 816
G + A T + LK Y V+A G G SS PI + T +
Sbjct: 58 EGDNRERALNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESSQPIKVATQPESG 115
Score = 82.1 bits (203), Expect = 9e-19
Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 4/103 (3%)
Query: 199 TLPVAPLDVKISEVTATSVRLDWTYPSET---LLYYVIQYKPKAANT-PYSEISGIITTY 254
LP AP DV V++ VRL W P+E + + + + + N + +
Sbjct: 16 VLPSAPRDVVPVLVSSRFVRLSWRPPAEAKGNIQTFTVFFSREGDNRERALNTTQPGSLQ 75
Query: 255 YTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTA 297
TV NL P Y F ++A N G G S P + T ++
Sbjct: 76 LTVGNLKPEAMYTFRVVAYNEWGPGESSQPIKVATQPESGPSS 118
Score = 76.7 bits (189), Expect = 6e-17
Identities = 25/112 (22%), Positives = 38/112 (33%), Gaps = 15/112 (13%)
Query: 277 GRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITA--------- 327
G S I + P APRDV +SS + + W P G I
Sbjct: 1 GSSGSSGKPAIPSSSVLPS-APRDVVPVLVSSRFVRLSWRPPAEAKGNIQTFTVFFSREG 59
Query: 328 -----KHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTK 374
+ ++ L P +Y + A + G G ++ PI V T+
Sbjct: 60 DNRERALNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESSQPIKVATQ 111
Score = 73.2 bits (180), Expect = 1e-15
Identities = 28/160 (17%), Positives = 54/160 (33%), Gaps = 42/160 (26%)
Query: 563 GPGPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYA 622
G S + + +PS PRD+ V + V L+W P + NI ++ +++ +
Sbjct: 1 GSSGSSGKPAIPSSSVLPSAPRDVVPVLVSSRFVRLSWRPPAEAKGNIQTFTVFF--SRE 58
Query: 623 KPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVETYSLTGL 682
RA++ + ++ L
Sbjct: 59 GDNRERALNTTQPGSL-------------------------------------QLTVGNL 81
Query: 683 YPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQN 722
P +Y + A + G G ++ PI V T+ P + P +
Sbjct: 82 KPEAMYTFRVVAYNEWGPGESSQPIKVATQ---PESGPSS 118
Score = 48.6 bits (116), Expect = 4e-07
Identities = 26/115 (22%), Positives = 41/115 (35%), Gaps = 16/115 (13%)
Query: 799 GDGPSSYPITIRTHEDDPS-----EVCPTQNDF-----RKNKKTNGS------NFKGGYL 842
G SS I + PS + F R + G+ F
Sbjct: 1 GSSGSSGKPAIPSSSVLPSAPRDVVPVLVSSRFVRLSWRPPAEAKGNIQTFTVFFSREGD 60
Query: 843 NDPMRFDVSDGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKTPGGVP 897
N + + G+L+L V L+P+ +YT +V A G G+ S+P + T
Sbjct: 61 NRERALNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESSQPIKVATQPESG 115
Score = 41.6 bits (98), Expect = 1e-04
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 30 VTEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQIT 65
+ +APRDV +SS + + W P G I
Sbjct: 14 SSVLPSAPRDVVPVLVSSRFVRLSWRPPAEAKGNIQ 49
Score = 32.4 bits (74), Expect = 0.16
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 447 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTA 484
L P +Y + A + G G ++ PI V T+ ++
Sbjct: 81 LKPEAMYTFRVVAYNEWGPGESSQPIKVATQPESGPSS 118
>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 103
Score = 113 bits (284), Expect = 6e-30
Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 710 RTKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIV 769
+ P PQN+ L++++ ++W+PP + NG I+ Y + F + +S+ +
Sbjct: 2 SSGSSGPSGFPQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDI---NSQQELQ 58
Query: 770 TLKNQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRT 811
+ T F L LK T Y I V A TS G GP S I RT
Sbjct: 59 NITTDTRFTLTGLKPDTTYDIKVRAWTSKGSGPLSPSIQSRT 100
Score = 110 bits (277), Expect = 5e-29
Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 6/103 (5%)
Query: 475 RTKQYEPGTAPRDVQVRPLSSSTMVIQWDEP--ETPNGQITGYKVYYTQDQSLPMSAWET 532
+ P P+++ V L++ST + WD P NG+I Y V + S E
Sbjct: 2 SSGSSGPSGFPQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDINS----QQEL 57
Query: 533 QVVDNNQLTTISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKT 575
Q + + T++ L P T Y I+V+A+TS G GPLS + +T
Sbjct: 58 QNITTDTRFTLTGLKPDTTYDIKVRAWTSKGSGPLSPSIQSRT 100
Score = 77.3 bits (191), Expect = 2e-17
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 13/99 (13%)
Query: 288 TTGETEPGTAPRDVQVRPLSSSTMVIQWDEP--ETPNGQIT-----------AKHHRRIG 334
++G + P P+++ V L++ST + WD P NG+I + + I
Sbjct: 2 SSGSSGPSGFPQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDINSQQELQNIT 61
Query: 335 LVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRT 373
++LTGL P+T Y I + A + +G G +P I RT
Sbjct: 62 TDTRFTLTGLKPDTTYDIKVRAWTSKGSGPLSPSIQSRT 100
Score = 66.6 bits (163), Expect = 1e-13
Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 7/94 (7%)
Query: 201 PVAPLDVKISEVTATSVRLDWTYPSET-----LLYYVIQYKPKAANTPYSEISGIITTYY 255
P ++ ++ +T ++ L W P ++ Y + ++ + I+ T +
Sbjct: 9 SGFPQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDINSQQELQNITT--DTRF 66
Query: 256 TVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITT 289
T+ L P T Y+ + A + G GP S T
Sbjct: 67 TLTGLKPDTTYDIKVRAWTSKGSGPLSPSIQSRT 100
Score = 60.4 bits (147), Expect = 2e-11
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 622 AKPRDLRAVDIQETAVTLAWSKPTHSGEN--IISYELYWNDTYAKAKHHRRIGLVETYSL 679
P++L + + LAW P + N IISY + + D + + I ++L
Sbjct: 10 GFPQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDI-NSQQELQNITTDTRFTL 68
Query: 680 TGLYPNTLYYIWLAAQSPRGEGATTPPIPVRT 711
TGL P+T Y I + A + +G G +P I RT
Sbjct: 69 TGLKPDTTYDIKVRAWTSKGSGPLSPSIQSRT 100
Score = 45.0 bits (107), Expect = 6e-06
Identities = 26/106 (24%), Positives = 41/106 (38%), Gaps = 14/106 (13%)
Query: 795 GTSIGDGPSSYPITIRTHEDDPSEVC-----PTQNDFRKNKKTNG--SNFKGGYLNDPMR 847
G+S GPS +P + S P + NG ++ + + +
Sbjct: 1 GSSGSSGPSGFPQNLHVTGLTTSTTELAWDPPVLAE------RNGRIISYTVVFRDINSQ 54
Query: 848 FDVS-DGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKT 892
++ +TGL+PDT Y I+V A T KG G S +T
Sbjct: 55 QELQNITTDTRFTLTGLKPDTTYDIKVRAWTSKGSGPLSPSIQSRT 100
Score = 43.4 bits (103), Expect = 2e-05
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 32 EPGTAPRDVQVRPLSSSTMVIQWDEP--ETPNGQITH 66
P P+++ V L++ST + WD P NG+I
Sbjct: 7 GPSGFPQNLHVTGLTTSTTELAWDPPVLAERNGRIIS 43
Score = 32.7 bits (75), Expect = 0.11
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 447 LYPNTLYYIWLAAQSPRGEGATTPPIPVRT 476
L P+T Y I + A + +G G +P I RT
Sbjct: 71 LKPDTTYDIKVRAWTSKGSGPLSPSIQSRT 100
>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer,
neovascularization, cell adhesion, protein binding,
oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A
Length = 203
Score = 115 bits (290), Expect = 1e-29
Identities = 39/190 (20%), Positives = 69/190 (36%), Gaps = 14/190 (7%)
Query: 624 PRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRI--GLVETYSLTG 681
P DL VDI ++++ L W+ II Y + V Y++TG
Sbjct: 26 PTDLSFVDITDSSIGLRWTPLN--SSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTG 83
Query: 682 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPP 741
L P Y I + GE P Q PP ++ + ++R++W PPP
Sbjct: 84 LEPGIDYDISVYTVKNGGEST-----PTTLTQQTAVPPPTDLRFTNIGPDTMRVTWAPPP 138
Query: 742 VERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDG 801
+ + + +++ + A + + + VL L TEY + V + +
Sbjct: 139 ----SIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHES 194
Query: 802 PSSYPITIRT 811
+T
Sbjct: 195 TPLR-GRQKT 203
Score = 114 bits (287), Expect = 4e-29
Identities = 45/206 (21%), Positives = 75/206 (36%), Gaps = 28/206 (13%)
Query: 174 IAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISEVTATSVRLDWTYP-SETLLYYV 232
+ +S +S +V + +P P D+ ++T +S+ L WT S T++ Y
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH----MEVP-QPTDLSFVDITDSSIGLRWTPLNSSTIIGYR 55
Query: 233 IQYKPKAANTPYSEIS-GIITTYYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGE 291
I P E YYTV L P +Y+ + V N G P++ T +
Sbjct: 56 ITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVYTVKNGGESTPTT----LTQQ 111
Query: 292 TEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQIT--------------AKHHRRIGLVE 337
T P D++ + TM + W P P+ +T
Sbjct: 112 TAVP-PPTDLRFTNIGPDTMRVTWAPP--PSIDLTNFLVRYSPVKNEEDVAELSISPSDN 168
Query: 338 TYSLTGLYPNTLYYIWLAAQSPRGEG 363
LT L P T Y + +++ + E
Sbjct: 169 AVVLTNLLPGTEYVVSVSSVYEQHES 194
Score = 101 bits (253), Expect = 1e-24
Identities = 39/244 (15%), Positives = 79/244 (32%), Gaps = 52/244 (21%)
Query: 459 AQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVY 518
S ++ +P + P P D+ ++ S++ ++W + I GY++
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMEVP--QPTDLSFVDITDSSIGLRWTPL--NSSTIIGYRIT 57
Query: 519 YTQDQSLPMSAWETQVVDNNQLT-TISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQ 577
VD++ T++ L P Y I V + G + TQQ
Sbjct: 58 VVAAGE--GIPIFEDFVDSSVGYYTVTGLEPGIDYDISVYTVKNGGESTPTTL----TQQ 111
Query: 578 GVPSQPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKPRDLRAVDIQETAV 637
P DLR +I + + W+ P ++ ++ + +
Sbjct: 112 TAVPPPTDLRFTNIGPDTMRVTWAPPP--SIDLTNFLVRY-------------------- 149
Query: 638 TLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSP 697
P + E++ + +D LT L P T Y + +++
Sbjct: 150 -----SPVKNEEDVAELSISPSDN--------------AVVLTNLLPGTEYVVSVSSVYE 190
Query: 698 RGEG 701
+ E
Sbjct: 191 QHES 194
Score = 95.7 bits (238), Expect = 1e-22
Identities = 29/201 (14%), Positives = 69/201 (34%), Gaps = 18/201 (8%)
Query: 694 AQSPRGEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYK 753
S ++ +P + VP P ++S ++ +SI + W P + I+ Y+
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMEVP--QPTDLSFVDITDSSIGLRWTPLN----SSTIIGYR 55
Query: 754 LQFVETGRSDSEASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHE 813
+ V G + + + L+ +Y I V + G+ + +T +T
Sbjct: 56 ITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVYTVKNGGESTPT-TLTQQTAV 114
Query: 814 DDPSEV---CPTQNDFR------KNKKTNGS--NFKGGYLNDPMRFDVSDGGALELNVTG 862
P+++ + R + + + + + +T
Sbjct: 115 PPPTDLRFTNIGPDTMRVTWAPPPSIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTN 174
Query: 863 LQPDTIYTIQVAALTRKGDGD 883
L P T Y + V+++ + +
Sbjct: 175 LLPGTEYVVSVSSVYEQHEST 195
Score = 88.7 bits (220), Expect = 3e-20
Identities = 43/286 (15%), Positives = 73/286 (25%), Gaps = 100/286 (34%)
Query: 281 PSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITAKHHRRIGLVETYS 340
SS V E P D+ ++ S++ ++W + I
Sbjct: 10 HSSGLVPRGSHMEVP-QPTDLSFVDITDSSIGLRWTPL--NSSTIIG------------- 53
Query: 341 LTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYGKTPGFGEQAAKHHRRIGLVETYS 400
Y I + GEG V + Y+
Sbjct: 54 ---------YRITV---VAAGEGIPIFEDFVDSSVG---------------------YYT 80
Query: 401 LTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYGKTPGFGEQALYPNTLYYIWLAAQ 460
+TGL P Y I + GE
Sbjct: 81 VTGLEPGIDYDISVYTVKNGGEST------------------------------------ 104
Query: 461 SPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYT 520
P Q P D++ + TM + W P P+ +T + V Y+
Sbjct: 105 ------------PTTLTQQTAVPPPTDLRFTNIGPDTMRVTWAPP--PSIDLTNFLVRYS 150
Query: 521 QDQSLPMSAWETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVGPGP 566
++ A + +N +++L P T Y + V +
Sbjct: 151 PVKNEEDVAELSISPSDNA-VVLTNLLPGTEYVVSVSSVYEQHEST 195
Score = 68.7 bits (168), Expect = 3e-13
Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 2/92 (2%)
Query: 199 TLPVAPLDVKISEVTATSVRLDWTYP-SETLLYYVIQYKPKAANTPYSEIS-GIITTYYT 256
T P D++ + + ++R+ W P S L ++++Y P +E+S
Sbjct: 112 TAVPPPTDLRFTNIGPDTMRVTWAPPPSIDLTNFLVRYSPVKNEEDVAELSISPSDNAVV 171
Query: 257 VRNLSPYTEYEFYIIAVNNLGRGPPSSPAVIT 288
+ NL P TEY + +V P T
Sbjct: 172 LTNLLPGTEYVVSVSSVYEQHESTPLRGRQKT 203
Score = 39.0 bits (91), Expect = 0.003
Identities = 12/56 (21%), Positives = 18/56 (32%)
Query: 843 NDPMRFDVSDGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKTPGGVPN 898
P+ D D VTGL+P Y I V + G+ + +
Sbjct: 64 GIPIFEDFVDSSVGYYTVTGLEPGIDYDISVYTVKNGGESTPTTLTQQTAVPPPTD 119
Score = 34.4 bits (79), Expect = 0.10
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 25 PGYILVTEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITH 66
P + P D++ + TM + W P P+ +T+
Sbjct: 105 PTTLTQQTAVPPPTDLRFTNIGPDTMRVTWAPP--PSIDLTN 144
Score = 29.8 bits (67), Expect = 2.6
Identities = 5/31 (16%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 36 APRDVQVRPLSSSTMVIQWDEPETPNGQITH 66
P D+ ++ S++ ++W + I
Sbjct: 25 QPTDLSFVDITDSSIGLRWTPL--NSSTIIG 53
>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type
III domain containing protein, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 115
Score = 112 bits (281), Expect = 2e-29
Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 7/118 (5%)
Query: 699 GEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVE 758
G ++ I V T+ VPG P N EP S TSI +SW PP + I Y+L + +
Sbjct: 1 GSSGSSGDIQVITQTGVPG-QPLNFKAEPESETSILLSWTPPR----SDTIANYELVYKD 55
Query: 759 TGRSDSEASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDP 816
E +T++ TS+ L LK + Y + A + G G S+ I+ RT +
Sbjct: 56 GE--HGEEQRITIEPGTSYRLQGLKPNSLYYFRLAARSPQGLGASTAEISARTMQSSG 111
Score = 104 bits (262), Expect = 9e-27
Identities = 24/117 (20%), Positives = 50/117 (42%), Gaps = 6/117 (5%)
Query: 464 GEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQ 523
G ++ I V T+ PG P + + P S +++++ W P + I Y++ Y +
Sbjct: 1 GSSGSSGDIQVITQTGVPG-QPLNFKAEPESETSILLSWTPP--RSDTIANYELVYKDGE 57
Query: 524 SLPMSAWETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVP 580
+ ++ + L P+++Y R+ A + G G +A + +T Q
Sbjct: 58 H---GEEQRITIEPGTSYRLQGLKPNSLYYFRLAARSPQGLGASTAEISARTMQSSG 111
Score = 96.3 bits (240), Expect = 8e-24
Identities = 44/154 (28%), Positives = 60/154 (38%), Gaps = 43/154 (27%)
Query: 563 GPGPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYA 622
G S + V TQ GVP QP + +A ET++ L+W+ P
Sbjct: 1 GSSGSSGDIQVITQTGVPGQPLNFKAEPESETSILLSWTPPRS----------------- 43
Query: 623 KPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVETYSLTGL 682
+ I +YEL + D + I +Y L GL
Sbjct: 44 --------------------------DTIANYELVYKDGEHGEEQRITIEPGTSYRLQGL 77
Query: 683 YPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVP 716
PN+LYY LAA+SP+G GA+T I RT Q
Sbjct: 78 KPNSLYYFRLAARSPQGLGASTAEISARTMQSSG 111
Score = 86.2 bits (214), Expect = 3e-20
Identities = 34/111 (30%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Query: 277 GRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQIT---------- 326
G S + T PG P + + P S +++++ W P + I
Sbjct: 1 GSSGSSGDIQVITQTGVPG-QPLNFKAEPESETSILLSWTPP--RSDTIANYELVYKDGE 57
Query: 327 --AKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQ 375
+ I +Y L GL PN+LYY LAA+SP+G GA+T I RT Q
Sbjct: 58 HGEEQRITIEPGTSYRLQGLKPNSLYYFRLAARSPQGLGASTAEISARTMQ 108
Score = 80.5 bits (199), Expect = 2e-18
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 201 PVAPLDVKISEVTATSVRLDWTYP-SETLLYYVIQYKPKAANTPYSEISGIITTYYTVRN 259
P PL+ K + TS+ L WT P S+T+ Y + YK + I+ T Y ++
Sbjct: 18 PGQPLNFKAEPESETSILLSWTPPRSDTIANYELVYKDGE-HGEEQRITIEPGTSYRLQG 76
Query: 260 LSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTA 297
L P + Y F + A + G G ++ T ++ ++
Sbjct: 77 LKPNSLYYFRLAARSPQGLGASTAEISARTMQSSGPSS 114
Score = 53.1 bits (128), Expect = 9e-09
Identities = 18/115 (15%), Positives = 42/115 (36%), Gaps = 20/115 (17%)
Query: 799 GDGPSSYPITIRTHEDDPSEVCPTQNDFRKNKKT------------NG--SNFKGGY--L 842
G SS I + T P + +F+ ++ + +N++ Y
Sbjct: 1 GSSGSSGDIQVITQTGVPGQP----LNFKAEPESETSILLSWTPPRSDTIANYELVYKDG 56
Query: 843 NDPMRFDVSDGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKTPGGVP 897
++ + GL+P+++Y ++AA + +G G + + +T
Sbjct: 57 EHGEEQRITIEPGTSYRLQGLKPNSLYYFRLAARSPQGLGASTAEISARTMQSSG 111
Score = 41.9 bits (99), Expect = 7e-05
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 447 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTA 484
L PN+LYY LAA+SP+G GA+T I RT Q ++
Sbjct: 77 LKPNSLYYFRLAARSPQGLGASTAEISARTMQSSGPSS 114
Score = 31.9 bits (73), Expect = 0.26
Identities = 6/31 (19%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 36 APRDVQVRPLSSSTMVIQWDEPETPNGQITH 66
P + + P S +++++ W P + I +
Sbjct: 20 QPLNFKAEPESETSILLSWTPP--RSDTIAN 48
>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related
receptor containing LDLR class A repeats, sorla; NMR
{Homo sapiens}
Length = 108
Score = 110 bits (277), Expect = 6e-29
Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 7/108 (6%)
Query: 475 RTKQYEPGTAPRDVQVRPLSSSTMVI--QWDEPETPNGQITGYKVYYTQDQSLPMSAWET 532
+ P APR++Q+ + VI W P +G I Y V Y++ S W +
Sbjct: 2 SSGSSGPD-APRNLQLSLPREAEGVIVGHWAPPIHTHGLIREYIVEYSRSGS---KMWAS 57
Query: 533 QVVDNNQLTTISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVP 580
Q +N T I +L +T+YT+RV A TS G G S + T +G
Sbjct: 58 QRAASNF-TEIKNLLVNTLYTVRVAAVTSRGIGNWSDSKSITTIKGSG 104
Score = 79.8 bits (197), Expect = 4e-18
Identities = 24/108 (22%), Positives = 38/108 (35%), Gaps = 6/108 (5%)
Query: 710 RTKQYVPGAPPQ-NVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASI 768
+ P AP +S + I W PP ++G I Y +++ +G +
Sbjct: 2 SSGSSGPDAPRNLQLSLPREAEGVIVGHWAPP--IHTHGLIREYIVEYSRSGSKMWASQR 59
Query: 769 VTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDP 816
+ L T Y + V A TS G G S +I T +
Sbjct: 60 AA---SNFTEIKNLLVNTLYTVRVAAVTSRGIGNWSDSKSITTIKGSG 104
Score = 67.9 bits (166), Expect = 5e-14
Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 14/101 (13%)
Query: 288 TTGETEPGTAPRDVQVRPLSSSTMVI--QWDEPETPNGQIT-----------AKHHRRIG 334
++G + P APR++Q+ + VI W P +G I +
Sbjct: 2 SSGSSGPD-APRNLQLSLPREAEGVIVGHWAPPIHTHGLIREYIVEYSRSGSKMWASQRA 60
Query: 335 LVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQ 375
+ L NTLY + +AA + RG G + + T +
Sbjct: 61 ASNFTEIKNLLVNTLYTVRVAAVTSRGIGNWSDSKSITTIK 101
Score = 65.9 bits (161), Expect = 3e-13
Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 7/99 (7%)
Query: 201 PVAPLDVKIS--EVTATSVRLDWTYPSET---LLYYVIQYKPKAANTPYSEISGIITTYY 255
P AP ++++S + W P T + Y+++Y + + +
Sbjct: 8 PDAPRNLQLSLPREAEGVIVGHWAPPIHTHGLIREYIVEYSRS--GSKMWASQRAASNFT 65
Query: 256 TVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEP 294
++NL T Y + AV + G G S ITT +
Sbjct: 66 EIKNLLVNTLYTVRVAAVTSRGIGNWSDSKSITTIKGSG 104
Score = 58.2 bits (141), Expect = 2e-10
Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 6/101 (5%)
Query: 624 PRDLRAVDIQ--ETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVETYSLTG 681
PR+L+ + E + W+ P H+ I Y + ++ + +K +R +
Sbjct: 11 PRNLQLSLPREAEGVIVGHWAPPIHTHGLIREYIVEYSRSGSKMWASQRAA-SNFTEIKN 69
Query: 682 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQN 722
L NTLY + +AA + RG G + + T + G+ P +
Sbjct: 70 LLVNTLYTVRVAAVTSRGIGNWSDSKSITTIK---GSGPSS 107
Score = 47.1 bits (112), Expect = 1e-06
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 860 VTGLQPDTIYTIQVAALTRKGDGDRSKPETIKTPGGVP 897
+ L +T+YT++VAA+T +G G+ S ++I T G
Sbjct: 67 IKNLLVNTLYTVRVAAVTSRGIGNWSDSKSITTIKGSG 104
Score = 39.0 bits (91), Expect = 7e-04
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 35 TAPRDVQVRPLSSSTMVI--QWDEPETPNGQIT 65
APR++Q+ + VI W P +G I
Sbjct: 9 DAPRNLQLSLPREAEGVIVGHWAPPIHTHGLIR 41
Score = 32.8 bits (75), Expect = 0.098
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 447 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEP 481
L NTLY + +AA + RG G + + T +
Sbjct: 70 LLVNTLYTVRVAAVTSRGIGNWSDSKSITTIKGSG 104
>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 126
Score = 110 bits (277), Expect = 1e-28
Identities = 34/125 (27%), Positives = 51/125 (40%), Gaps = 10/125 (8%)
Query: 463 RGEGATTPPIPVRT-----KQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKV 517
G T + T + P + VRPL +S +V+ W PE N + GY +
Sbjct: 4 GSSGPATDWLSAETFESDLDETRVPEVPSSLHVRPLVTS-IVVSWTPPENQNIVVRGYAI 62
Query: 518 YYTQDQSLPMSAWETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVGPG-PLSAPVLVKTQ 576
Y A +V + TI +L P + Y I ++AF +VG G PL + +
Sbjct: 63 GYGIGSP---HAQTIKVDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYESAVTRPH 119
Query: 577 QGVPS 581
PS
Sbjct: 120 TSGPS 124
Score = 91.4 bits (227), Expect = 5e-22
Identities = 29/126 (23%), Positives = 46/126 (36%), Gaps = 11/126 (8%)
Query: 698 RGEGATTPPIPVRT-----KQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYY 752
G T + T + P ++ P TSI +SW PP E N + Y
Sbjct: 4 GSSGPATDWLSAETFESDLDETRVPEVPSSLHVRP-LVTSIVVSWTPP--ENQNIVVRGY 60
Query: 753 KLQFVETGRSDSEASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDG-PSSYPITIRT 811
+ + S +I Q + ++ L + Y I + A ++G+G P R
Sbjct: 61 AIGYGIG--SPHAQTIKVDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYESAVTRP 118
Query: 812 HEDDPS 817
H PS
Sbjct: 119 HTSGPS 124
Score = 73.6 bits (181), Expect = 8e-16
Identities = 28/120 (23%), Positives = 43/120 (35%), Gaps = 19/120 (15%)
Query: 274 NNLGRGPPSSPAVITT-----GETEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITA- 327
++ GP + T ET P + VRPL +S +V+ W PE N +
Sbjct: 2 SSGSSGPATDWLSAETFESDLDETRVPEVPSSLHVRPLVTS-IVVSWTPPENQNIVVRGY 60
Query: 328 --KHHRRIGLVET---------YSLTGLYPNTLYYIWLAAQSPRGEG-ATTPPIPVRTKQ 375
+ +T Y++ L P++ Y I L A + GEG R
Sbjct: 61 AIGYGIGSPHAQTIKVDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYESAVTRPHT 120
Score = 69.4 bits (170), Expect = 3e-14
Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 6/101 (5%)
Query: 201 PVAPLDVKISEVTATSVRLDWTYPSET---LLYYVIQYKPKAANTPYSEISGIITTYYTV 257
P P + + TS+ + WT P + Y I Y + + ++ YYT+
Sbjct: 28 PEVPSSLHV-RPLVTSIVVSWTPPENQNIVVRGYAIGYGIGSPHAQTIKVDYK-QRYYTI 85
Query: 258 RNLSPYTEYEFYIIAVNNLGRGPPSSPAVIT-TGETEPGTA 297
NL P + Y + A NN+G G P + +T + P +
Sbjct: 86 ENLDPSSHYVITLKAFNNVGEGIPLYESAVTRPHTSGPSSG 126
Score = 61.7 bits (150), Expect = 1e-11
Identities = 26/166 (15%), Positives = 48/166 (28%), Gaps = 49/166 (29%)
Query: 560 TSVGPGPLSAPVLVKTQQG------VPSQPRDLRAVDIQETAVTLAWSKPTHSGENIISY 613
+S GP + + +T + VP P L
Sbjct: 2 SSGSSGPATDWLSAETFESDLDETRVPEVPSSLH-------------------------- 35
Query: 614 ELYWNDTYAKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGL 673
V T++ ++W+ P + + Y + + A+ +
Sbjct: 36 ----------------VRPLVTSIVVSWTPPENQNIVVRGYAIGYGIGSPHAQTIKVDYK 79
Query: 674 VETYSLTGLYPNTLYYIWLAAQSPRGEG-ATTPPIPVRTKQYVPGA 718
Y++ L P++ Y I L A + GEG R P +
Sbjct: 80 QRYYTIENLDPSSHYVITLKAFNNVGEGIPLYESAVTRPHTSGPSS 125
Score = 50.1 bits (120), Expect = 1e-07
Identities = 20/123 (16%), Positives = 36/123 (29%), Gaps = 20/123 (16%)
Query: 795 GTSIGDGPSSYPITIRTHEDDPSEVCPTQ--NDFRKN-------------KKTNG--SNF 837
G+S GP++ ++ T E D E + + + N +
Sbjct: 1 GSSGSSGPATDWLSAETFESDLDETRVPEVPSSLHVRPLVTSIVVSWTPPENQNIVVRGY 60
Query: 838 KGGYLND--PMRFDVSDGGALELNVTGLQPDTIYTIQVAALTRKGDGD-RSKPETIKTPG 894
GY + D + L P + Y I + A G+G + +
Sbjct: 61 AIGYGIGSPHAQTIKVDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYESAVTRPHT 120
Query: 895 GVP 897
P
Sbjct: 121 SGP 123
Score = 41.3 bits (97), Expect = 2e-04
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 31 TEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQIT 65
T P + VRPL +S +V+ W PE N +
Sbjct: 25 TRVPEVPSSLHVRPLVTS-IVVSWTPPENQNIVVR 58
Score = 30.9 bits (70), Expect = 0.59
Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 447 LYPNTLYYIWLAAQSPRGEG-ATTPPIPVRTKQYEPGTA 484
L P++ Y I L A + GEG R P +
Sbjct: 88 LDPSSHYVITLKAFNNVGEGIPLYESAVTRPHTSGPSSG 126
>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 106
Score = 109 bits (275), Expect = 1e-28
Identities = 23/106 (21%), Positives = 47/106 (44%), Gaps = 6/106 (5%)
Query: 476 TKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVV 535
+ ++Q S ++++I W+ P NG + GY+++ T +S + Q +
Sbjct: 2 SSGSSGPGPVENLQAVSTSPTSILITWEPPAYANGPVQGYRLFCT-----EVSTGKEQNI 56
Query: 536 DNNQLT-TISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVP 580
+ + L+ + L T Y++R A+ GPG + + V T
Sbjct: 57 EVDGLSYKLEGLKKFTEYSLRFLAYNRYGPGVSTDDITVVTLSDSG 102
Score = 107 bits (270), Expect = 6e-28
Identities = 36/106 (33%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Query: 711 TKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVT 770
+ PG P +N+ S TSI I+WEPP +NG + Y+L E + V
Sbjct: 3 SGSSGPG-PVENLQAVSTSPTSILITWEPP--AYANGPVQGYRLFCTEVSTGKEQNIEV- 58
Query: 771 LKNQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDP 816
+ S+ L+ LKK+TEY + LA G G S+ IT+ T D
Sbjct: 59 --DGLSYKLEGLKKFTEYSLRFLAYNRYGPGVSTDDITVVTLSDSG 102
Score = 76.9 bits (190), Expect = 4e-17
Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 12/99 (12%)
Query: 288 TTGETEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITA-----------KHHRRIGLV 336
++G + PG ++Q S ++++I W+ P NG + K
Sbjct: 2 SSGSSGPG-PVENLQAVSTSPTSILITWEPPAYANGPVQGYRLFCTEVSTGKEQNIEVDG 60
Query: 337 ETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQ 375
+Y L GL T Y + A + G G +T I V T
Sbjct: 61 LSYKLEGLKKFTEYSLRFLAYNRYGPGVSTDDITVVTLS 99
Score = 74.2 bits (183), Expect = 3e-16
Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 5/102 (4%)
Query: 199 TLPVAPLDVKISEVTATSVRLDWTYPSET---LLYYVIQYKPKAANTPYSEISGIITTYY 255
+ P +++ + TS+ + W P+ + Y + +T + + Y
Sbjct: 6 SGPGPVENLQAVSTSPTSILITWEPPAYANGPVQGYRLFCTEV--STGKEQNIEVDGLSY 63
Query: 256 TVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTA 297
+ L +TEY +A N G G + + T ++
Sbjct: 64 KLEGLKKFTEYSLRFLAYNRYGPGVSTDDITVVTLSDSGPSS 105
Score = 68.4 bits (168), Expect = 3e-14
Identities = 22/99 (22%), Positives = 39/99 (39%), Gaps = 3/99 (3%)
Query: 622 AKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVETYSLTG 681
+L+AV T++ + W P ++ + Y L+ + + + + +Y L G
Sbjct: 9 GPVENLQAVSTSPTSILITWEPPAYANGPVQGYRLFCTEVSTGKEQNIEVD-GLSYKLEG 67
Query: 682 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPP 720
L T Y + A + G G +T I V T P
Sbjct: 68 LKKFTEYSLRFLAYNRYGPGVSTDDITVVTLSDSG--PS 104
Score = 46.9 bits (112), Expect = 1e-06
Identities = 11/46 (23%), Positives = 19/46 (41%)
Query: 852 DGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKTPGGVP 897
+ L + GL+ T Y+++ A R G G + T+ T
Sbjct: 57 EVDGLSYKLEGLKKFTEYSLRFLAYNRYGPGVSTDDITVVTLSDSG 102
Score = 43.4 bits (103), Expect = 2e-05
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 33 PGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITH 66
++Q S ++++I W+ P NG +
Sbjct: 7 GPGPVENLQAVSTSPTSILITWEPPAYANGPVQG 40
Score = 35.3 bits (82), Expect = 0.014
Identities = 10/38 (26%), Positives = 15/38 (39%)
Query: 447 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTA 484
L T Y + A + G G +T I V T ++
Sbjct: 68 LKKFTEYSLRFLAYNRYGPGVSTDDITVVTLSDSGPSS 105
>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 119
Score = 109 bits (273), Expect = 3e-28
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 4/120 (3%)
Query: 464 GEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQ 523
G ++ P VRT + PG + + +++ + W EP NG +TGY++ + ++
Sbjct: 1 GSSGSSGPQLVRTHEDVPG-PVGHLSFSEILDTSLKVSWQEPGEKNGILTGYRISW-EEY 58
Query: 524 SLPMSAWETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPSQP 583
+ + + + ++ LT T YTI V A TS G G +SA + + PS P
Sbjct: 59 NRTNTRVTHYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSASTI--SSGVPPSGP 116
Score = 106 bits (266), Expect = 3e-27
Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 3/110 (2%)
Query: 699 GEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVE 758
G ++ P VRT + VPG P ++S + TS+++SW+ P NG + Y++ + E
Sbjct: 1 GSSGSSGPQLVRTHEDVPG-PVGHLSFSEILDTSLKVSWQEP--GEKNGILTGYRISWEE 57
Query: 759 TGRSDSEASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPIT 808
R+++ + + + L T Y I V A TS G G S
Sbjct: 58 YNRTNTRVTHYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSASTI 107
Score = 78.2 bits (193), Expect = 2e-17
Identities = 25/107 (23%), Positives = 41/107 (38%), Gaps = 15/107 (14%)
Query: 277 GRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQIT---------- 326
G S P ++ T E PG + + +++ + W EP NG +T
Sbjct: 1 GSSGSSGPQLVRTHEDVPG-PVGHLSFSEILDTSLKVSWQEPGEKNGILTGYRISWEEYN 59
Query: 327 ----AKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPI 369
H + Y +TGL T Y I +AA + +G+G +
Sbjct: 60 RTNTRVTHYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSAST 106
Score = 75.6 bits (186), Expect = 2e-16
Identities = 33/160 (20%), Positives = 53/160 (33%), Gaps = 42/160 (26%)
Query: 563 GPGPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYA 622
G S P LV+T + VP L +I +T++ ++W +P + Y + W
Sbjct: 1 GSSGSSGPQLVRTHEDVPGPVGHLSFSEILDTSLKVSWQEPGEKNGILTGYRISW----- 55
Query: 623 KPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVETYSLTGL 682
+ T VT T Y +TGL
Sbjct: 56 -----EEYNRTNTRVTHYLPNVTLE-----------------------------YRVTGL 81
Query: 683 YPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQN 722
T Y I +AA + +G+G + VP + P +
Sbjct: 82 TALTTYTIEVAAMTSKGQGQVSAST---ISSGVPPSGPSS 118
Score = 70.5 bits (173), Expect = 1e-14
Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 7/102 (6%)
Query: 201 PVAPLDVKISEVTATSVRLDWTYPSET---LLYYVIQYKPK-AANTPYSEISGIITTYYT 256
P + SE+ TS+++ W P E L Y I ++ NT + +T Y
Sbjct: 18 PGPVGHLSFSEILDTSLKVSWQEPGEKNGILTGYRISWEEYNRTNTRVTHYLPNVTLEYR 77
Query: 257 VRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAP 298
V L+ T Y + A+ + G+G S+ T P + P
Sbjct: 78 VTGLTALTTYTIEVAAMTSKGQGQVSAS---TISSGVPPSGP 116
Score = 60.9 bits (148), Expect = 2e-11
Identities = 34/119 (28%), Positives = 47/119 (39%), Gaps = 18/119 (15%)
Query: 799 GDGPSSYPITIRTHEDDPSEVC-PTQNDFRKN---------KKTNGS------NFKGGYL 842
G SS P +RTHED P V + ++ + NG +++
Sbjct: 1 GSSGSSGPQLVRTHEDVPGPVGHLSFSEILDTSLKVSWQEPGEKNGILTGYRISWEEYNR 60
Query: 843 NDPMRFDVSDGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKTPGGVPNRPH 901
+ LE VTGL T YTI+VAA+T KG G S + G P+ P
Sbjct: 61 TNTRVTHYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSASTI--SSGVPPSGPS 117
Score = 42.0 bits (99), Expect = 9e-05
Identities = 6/31 (19%), Positives = 13/31 (41%)
Query: 36 APRDVQVRPLSSSTMVIQWDEPETPNGQITH 66
+ + +++ + W EP NG +T
Sbjct: 20 PVGHLSFSEILDTSLKVSWQEPGEKNGILTG 50
>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 108 bits (272), Expect = 4e-28
Identities = 36/121 (29%), Positives = 50/121 (41%), Gaps = 3/121 (2%)
Query: 464 GEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEP-ETPNGQITGYKVYYTQD 522
G ++ T P APRDV +S+ + + W P P+G Y V+YT++
Sbjct: 1 GSSGSSGEHAPATTGPLPS-APRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKE 59
Query: 523 QSLPMSAWETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPSQ 582
T Q TI +L P T+Y RV A G G SAP+ V+TQ
Sbjct: 60 GIARERVENTSHPGEMQ-VTIQNLMPATVYIFRVMAQNKHGSGESSAPLRVETQPESGPS 118
Query: 583 P 583
Sbjct: 119 S 119
Score = 99.4 bits (248), Expect = 7e-25
Identities = 23/119 (19%), Positives = 46/119 (38%), Gaps = 2/119 (1%)
Query: 699 GEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVE 758
G ++ T +P P++V +S+ I+++W P +G + Y + + +
Sbjct: 1 GSSGSSGEHAPATTGPLPS-APRDVVASLVSTRFIKLTWRTPA-SDPHGDNLTYSVFYTK 58
Query: 759 TGRSDSEASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDPS 817
G + + + + L T Y V+A G G SS P+ + T +
Sbjct: 59 EGIARERVENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSAPLRVETQPESGP 117
Score = 82.8 bits (205), Expect = 5e-19
Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 5/104 (4%)
Query: 199 TLPVAPLDVKISEVTATSVRLDWTYPSET----LLYYVIQYKPKAANTPYS-EISGIITT 253
LP AP DV S V+ ++L W P+ L Y + Y + S
Sbjct: 16 PLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHPGEM 75
Query: 254 YYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTA 297
T++NL P T Y F ++A N G G S+P + T ++
Sbjct: 76 QVTIQNLMPATVYIFRVMAQNKHGSGESSAPLRVETQPESGPSS 119
Score = 68.2 bits (167), Expect = 5e-14
Identities = 25/113 (22%), Positives = 40/113 (35%), Gaps = 16/113 (14%)
Query: 277 GRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEP-ETPNGQITA-------- 327
G S T P APRDV +S+ + + W P P+G
Sbjct: 1 GSSGSSGEHAPATTGPLPS-APRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKE 59
Query: 328 ------KHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTK 374
+ ++ L P T+Y + AQ+ G G ++ P+ V T+
Sbjct: 60 GIARERVENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSAPLRVETQ 112
Score = 64.7 bits (158), Expect = 9e-13
Identities = 28/159 (17%), Positives = 49/159 (30%), Gaps = 42/159 (26%)
Query: 563 GPGPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLAWSKP-THSGENIISYEL-YWNDT 620
G S T +PS PRD+ A + + L W P + + ++Y + Y +
Sbjct: 1 GSSGSSGEHAPATTGPLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEG 60
Query: 621 YAKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVETYSLT 680
A+ R E ++
Sbjct: 61 IARERVENTSHPGEM----------------------------------------QVTIQ 80
Query: 681 GLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAP 719
L P T+Y + AQ+ G G ++ P+ V T+ +
Sbjct: 81 NLMPATVYIFRVMAQNKHGSGESSAPLRVETQPESGPSS 119
Score = 46.6 bits (111), Expect = 2e-06
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 850 VSDGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKTPGGVP 897
S G +++ + L P T+Y +V A + G G+ S P ++T
Sbjct: 69 TSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSAPLRVETQPESG 116
Score = 35.8 bits (83), Expect = 0.013
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 36 APRDVQVRPLSSSTMVIQWDEP-ETPNGQIT 65
APRDV +S+ + + W P P+G
Sbjct: 20 APRDVVASLVSTRFIKLTWRTPASDPHGDNL 50
Score = 31.2 bits (71), Expect = 0.47
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 447 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTA 484
L P T+Y + AQ+ G G ++ P+ V T+ ++
Sbjct: 82 LMPATVYIFRVMAQNKHGSGESSAPLRVETQPESGPSS 119
>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular
matrix, adhesion, fusion protein, structural protein;
2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1
Length = 186
Score = 110 bits (277), Expect = 6e-28
Identities = 39/191 (20%), Positives = 68/191 (35%), Gaps = 15/191 (7%)
Query: 624 PRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVETYSLTGLY 683
P+DL D ET ++L W +P Y L + K ++ L GL
Sbjct: 10 PKDLEVSDPTETTLSLRWRRPV---AKFDRYRLTYVSPSGKKNEMEIPVDSTSFILRGLD 66
Query: 684 PNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVE 743
T Y I L A+ R + P K P+ +S ++ S +SW PP
Sbjct: 67 AGTEYTISLVAEKGRHKSK-----PTTIKGSTVVGSPKGISFSDITENSATVSWTPPR-- 119
Query: 744 RSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDGPS 803
+ Y++ +V V ++T L +L +Y + +++ +
Sbjct: 120 ---SRVDSYRVSYVPITGGTPNVVTVD-GSKTRTKLVKLVPGVDYNVNIISVKGFEESEP 175
Query: 804 SYPITIRTHED 814
++T D
Sbjct: 176 IS-GILKTALD 185
Score = 108 bits (272), Expect = 3e-27
Identities = 36/186 (19%), Positives = 63/186 (33%), Gaps = 22/186 (11%)
Query: 199 TLPVAPLDVKISEVTATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEISGIITTYYTVR 258
T P D+++S+ T T++ L W P Y + Y + EI T+ + +R
Sbjct: 5 TDLDNPKDLEVSDPTETTLSLRWRRPVAKFDRYRLTYVSPSGKKNEMEIPVDSTS-FILR 63
Query: 259 NLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEP 318
L TEY ++A + P++ G T G +P+ + ++ ++ + W P
Sbjct: 64 GLDAGTEYTISLVAEKGRHKSKPTT----IKGSTVVG-SPKGISFSDITENSATVSWTPP 118
Query: 319 E----------TPNGQITAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEG----- 363
P T G L L P Y + + + E
Sbjct: 119 RSRVDSYRVSYVPITGGTPNVVTVDGSKTRTKLVKLVPGVDYNVNIISVKGFEESEPISG 178
Query: 364 -ATTPP 368
T
Sbjct: 179 ILKTAL 184
Score = 97.1 bits (242), Expect = 3e-23
Identities = 34/231 (14%), Positives = 65/231 (28%), Gaps = 61/231 (26%)
Query: 483 TAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLT- 541
P+D++V + +T+ ++W P + Y++ Y P + + +
Sbjct: 8 DNPKDLEVSDPTETTLSLRWRRPV---AKFDRYRLTYVS----PSGKKNEMEIPVDSTSF 60
Query: 542 TISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLAWS 601
+ L T YTI + A V P+ + DI E + T++W+
Sbjct: 61 ILRGLDAGTEYTISLVAEKGRHKS----KPTTIKGSTVVGSPKGISFSDITENSATVSWT 116
Query: 602 KPTHSGENIISYELYWNDTYAKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDT 661
P + SY + + ++ VD +T
Sbjct: 117 PPRS---RVDSYRVSYVPITGGTPNVVTVDGSKT-------------------------- 147
Query: 662 YAKAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEG------ATTPP 706
L L P Y + + + E T
Sbjct: 148 --------------RTKLVKLVPGVDYNVNIISVKGFEESEPISGILKTAL 184
Score = 82.1 bits (203), Expect = 4e-18
Identities = 21/121 (17%), Positives = 40/121 (33%), Gaps = 12/121 (9%)
Query: 447 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPE 506
L T Y I L A+ R + P K +P+ + ++ ++ + W P
Sbjct: 65 LDAGTEYTISLVAEKGRHKSK-----PTTIKGSTVVGSPKGISFSDITENSATVSWTPP- 118
Query: 507 TPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQL-TTISDLTPHTIYTIRVQAFTSVGPG 565
++ Y+V Y VD ++ T + L P Y + + +
Sbjct: 119 --RSRVDSYRVSYVPITG---GTPNVVTVDGSKTRTKLVKLVPGVDYNVNIISVKGFEES 173
Query: 566 P 566
Sbjct: 174 E 174
Score = 81.3 bits (201), Expect = 7e-18
Identities = 30/174 (17%), Positives = 60/174 (34%), Gaps = 17/174 (9%)
Query: 719 PPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFV 778
P+++ + T++ + W P Y+L +V +E I + TSF+
Sbjct: 9 NPKDLEVSDPTETTLSLRWRRPV-----AKFDRYRLTYVSPSGKKNEMEIPV--DSTSFI 61
Query: 779 LDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDPSEV---CPTQNDFR---KNKKT 832
L L TEY I ++A + I T P + T+N ++
Sbjct: 62 LRGLDAGTEYTISLVAEKGRHKSKPT-TIKGSTVVGSPKGISFSDITENSATVSWTPPRS 120
Query: 833 NGSNFKGGYL---NDPMRFDVSDGGALELNVTGLQPDTIYTIQVAALTRKGDGD 883
+++ Y+ DG + L P Y + + ++ + +
Sbjct: 121 RVDSYRVSYVPITGGTPNVVTVDGSKTRTKLVKLVPGVDYNVNIISVKGFEESE 174
Score = 36.7 bits (85), Expect = 0.016
Identities = 8/47 (17%), Positives = 14/47 (29%)
Query: 852 DGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKTPGGVPN 898
+ + GL T YTI + A + + + G
Sbjct: 54 PVDSTSFILRGLDAGTEYTISLVAEKGRHKSKPTTIKGSTVVGSPKG 100
Score = 28.6 bits (64), Expect = 7.8
Identities = 7/36 (19%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Query: 31 TEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITH 66
T+ P+D++V + +T+ ++W P +
Sbjct: 5 TDLD-NPKDLEVSDPTETTLSLRWRRPV---AKFDR 36
>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 111
Score = 106 bits (266), Expect = 2e-27
Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 5/110 (4%)
Query: 474 VRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQ 533
+ Q P ++ +++ + W EPE PNG I Y++ Y + S
Sbjct: 4 GSSGQAAPS-QVVVIRQERAGQTSVSLLWQEPEQPNGIILEYEIKYYEKDKEMQSYS--T 60
Query: 534 VVDNNQLTTISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPSQP 583
+ T+S L P T Y +V+A TS G G S + V+T G PS P
Sbjct: 61 LKAVTTRATVSGLKPGTRYVFQVRARTSAGCGRFSQAMEVET--GKPSGP 108
Score = 94.7 bits (236), Expect = 2e-23
Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 4/108 (3%)
Query: 709 VRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASI 768
+ Q P + E TS+ + W+ P E+ NG I+ Y++++ E + S
Sbjct: 4 GSSGQAAPSQVV-VIRQERAGQTSVSLLWQEP--EQPNGIILEYEIKYYEKDKEMQSYST 60
Query: 769 VTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDP 816
+ T + LK T Y V A TS G G S + + T +
Sbjct: 61 LKA-VTTRATVSGLKPGTRYVFQVRARTSAGCGRFSQAMEVETGKPSG 107
Score = 74.3 bits (183), Expect = 3e-16
Identities = 20/102 (19%), Positives = 40/102 (39%), Gaps = 14/102 (13%)
Query: 287 ITTGETEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQIT-------------AKHHRRI 333
++G+ P ++ +++ + W EPE PNG I +
Sbjct: 4 GSSGQAAPS-QVVVIRQERAGQTSVSLLWQEPEQPNGIILEYEIKYYEKDKEMQSYSTLK 62
Query: 334 GLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQ 375
+ +++GL P T Y + A++ G G + + V T +
Sbjct: 63 AVTTRATVSGLKPGTRYVFQVRARTSAGCGRFSQAMEVETGK 104
Score = 72.4 bits (178), Expect = 2e-15
Identities = 27/94 (28%), Positives = 38/94 (40%), Gaps = 3/94 (3%)
Query: 201 PVAPLDVKISEVTATSVRLDWTYPSET---LLYYVIQYKPKAANTPYSEISGIITTYYTV 257
P + ++ TSV L W P + +L Y I+Y K +TT TV
Sbjct: 11 PSQVVVIRQERAGQTSVSLLWQEPEQPNGIILEYEIKYYEKDKEMQSYSTLKAVTTRATV 70
Query: 258 RNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGE 291
L P T Y F + A + G G S + TG+
Sbjct: 71 SGLKPGTRYVFQVRARTSAGCGRFSQAMEVETGK 104
Score = 68.5 bits (168), Expect = 3e-14
Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 3/99 (3%)
Query: 623 KPRDLRAVDIQETAVTLAWSKPTHSGENIISYEL-YWNDTYAKAKHHRRIGLVETYSLTG 681
+ +R +T+V+L W +P I+ YE+ Y+ + + +++G
Sbjct: 13 QVVVIRQERAGQTSVSLLWQEPEQPNGIILEYEIKYYEKDKEMQSYSTLKAVTTRATVSG 72
Query: 682 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPP 720
L P T Y + A++ G G + + V T + P P
Sbjct: 73 LKPGTRYVFQVRARTSAGCGRFSQAMEVETGK--PSGPS 109
Score = 48.1 bits (115), Expect = 4e-07
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 844 DPMRFDVSDGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKTPGGVPNRP 900
+ + V+GL+P T Y QV A T G G S+ ++T G P+ P
Sbjct: 54 EMQSYSTLKAVTTRATVSGLKPGTRYVFQVRARTSAGCGRFSQAMEVET--GKPSGP 108
Score = 42.3 bits (100), Expect = 5e-05
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 36 APRDVQVRPLSSSTMVIQWDEPETPNGQITH 66
++ +++ + W EPE PNG I
Sbjct: 13 QVVVIRQERAGQTSVSLLWQEPEQPNGIILE 43
Score = 34.3 bits (79), Expect = 0.037
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 447 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQ 478
L P T Y + A++ G G + + V T +
Sbjct: 73 LKPGTRYVFQVRARTSAGCGRFSQAMEVETGK 104
>1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 117
Score = 105 bits (263), Expect = 5e-27
Identities = 33/120 (27%), Positives = 51/120 (42%), Gaps = 6/120 (5%)
Query: 699 GEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVE 758
G ++ + V TK+ P PP NV + T + ++WE + + YK+ +
Sbjct: 1 GSSGSSGTVNVTTKKTPPSQPPGNVVWN-ATDTKVLLNWEQVKAMENESEVTGYKVFY-- 57
Query: 759 TGRSDSEASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITI-RTHEDDPS 817
R+ S+ ++ L + L +Y I V A T GDG SS I I R PS
Sbjct: 58 --RTSSQNNVQVLNTNKTSAELVLPIKEDYIIEVKATTDGGDGTSSEQIRIPRITSSGPS 115
Score = 96.1 bits (239), Expect = 1e-23
Identities = 29/121 (23%), Positives = 52/121 (42%), Gaps = 9/121 (7%)
Query: 464 GEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEP--ETPNGQITGYKVYYTQ 521
G ++ + V TK+ P P +V + + +++ W++ ++TGYKV+Y
Sbjct: 1 GSSGSSGTVNVTTKKTPPSQPPGNVVW-NATDTKVLLNWEQVKAMENESEVTGYKVFYRT 59
Query: 522 DQSLPMSAWETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVGPGPLSAPVLV-KTQQGVP 580
S QV++ N+ + L Y I V+A T G G S + + + P
Sbjct: 60 S-----SQNNVQVLNTNKTSAELVLPIKEDYIIEVKATTDGGDGTSSEQIRIPRITSSGP 114
Query: 581 S 581
S
Sbjct: 115 S 115
Score = 63.3 bits (154), Expect = 3e-12
Identities = 18/109 (16%), Positives = 40/109 (36%), Gaps = 13/109 (11%)
Query: 277 GRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEP--ETPNGQIT-------A 327
G S +TT +T P P +V + + +++ W++ ++T
Sbjct: 1 GSSGSSGTVNVTTKKTPPSQPPGNVVW-NATDTKVLLNWEQVKAMENESEVTGYKVFYRT 59
Query: 328 KHHRRIGLVET---YSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRT 373
+ ++ T + L Y I + A + G+G ++ I +
Sbjct: 60 SSQNNVQVLNTNKTSAELVLPIKEDYIIEVKATTDGGDGTSSEQIRIPR 108
Score = 54.1 bits (130), Expect = 4e-09
Identities = 26/158 (16%), Positives = 45/158 (28%), Gaps = 44/158 (27%)
Query: 563 GPGPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYA 622
G S V V T++ PSQP + +T V L W +
Sbjct: 1 GSSGSSGTVNVTTKKTPPSQPPGNVVWNATDTKVLLNWEQV------------------- 41
Query: 623 KPRDLRAVDIQETAVTLAWSKPTHSGENIISYEL-YWNDTYAKAKHHRRIGLVETYSLTG 681
K + + Y++ Y + + T +
Sbjct: 42 --------------------KAMENESEVTGYKVFYRTSSQNNVQVLNTNK---TSAELV 78
Query: 682 LYPNTLYYIWLAAQSPRGEGATTPPIPV-RTKQYVPGA 718
L Y I + A + G+G ++ I + R P +
Sbjct: 79 LPIKEDYIIEVKATTDGGDGTSSEQIRIPRITSSGPSS 116
Score = 51.0 bits (122), Expect = 6e-08
Identities = 18/102 (17%), Positives = 30/102 (29%), Gaps = 9/102 (8%)
Query: 201 PVAPLDVKISEVTATSVRLDWTYPSET-----LLYYVIQYKPKAANTPYSEISGIITTYY 255
P P + T T V L+W + Y + Y+ + N +
Sbjct: 18 PSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNNVQVLNT---NKTS 74
Query: 256 TVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVI-TTGETEPGT 296
L +Y + A + G G S I + P +
Sbjct: 75 AELVLPIKEDYIIEVKATTDGGDGTSSEQIRIPRITSSGPSS 116
Score = 48.3 bits (115), Expect = 5e-07
Identities = 23/117 (19%), Positives = 35/117 (29%), Gaps = 19/117 (16%)
Query: 799 GDGPSSYPITIRTHEDDPSEVCPTQN--------------DFRKNKKTNG--SNFKGGYL 842
G SS + + T + PS+ P N + K + + +K Y
Sbjct: 1 GSSGSSGTVNVTTKKTPPSQ--PPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKVFYR 58
Query: 843 NDPMRFDVSDGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETI-KTPGGVPN 898
L Y I+V A T GDG S+ I + P+
Sbjct: 59 TSSQNNVQVLNTNKTSAELVLPIKEDYIIEVKATTDGGDGTSSEQIRIPRITSSGPS 115
Score = 28.3 bits (63), Expect = 4.4
Identities = 5/35 (14%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 33 PGTAPRDVQVRPLSSSTMVIQWDEP--ETPNGQIT 65
P P +V + + +++ W++ ++T
Sbjct: 18 PSQPPGNVVW-NATDTKVLLNWEQVKAMENESEVT 51
Score = 27.5 bits (61), Expect = 9.9
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 447 LYPNTLYYIWLAAQSPRGEGATTPPIPV-RTKQYEPGT 483
L Y I + A + G+G ++ I + R P +
Sbjct: 79 LPIKEDYIIEVKATTDGGDGTSSEQIRIPRITSSGPSS 116
>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 106
Score = 104 bits (262), Expect = 6e-27
Identities = 41/101 (40%), Positives = 62/101 (61%), Gaps = 2/101 (1%)
Query: 199 TLPVAPLDVKISEVTATSVRLDWTYP-SETLLYYVIQYKPKAANTPYSEISGIITTYYTV 257
+ P P+D+ ++E TATSV L W SE + YY IQY+ P+ E+ G+ TT Y++
Sbjct: 6 SGPKPPIDLVVTETTATSVTLTWDSGNSEPVTYYGIQYRAAGTEGPFQEVDGVATTRYSI 65
Query: 258 RNLSPYTEYEFYIIAVNNLGRGPPSSP-AVITTGETEPGTA 297
LSP++EY F ++AVN++GRGPPS T ++ P +
Sbjct: 66 GGLSPFSEYAFRVLAVNSIGRGPPSEAVRARTGEQSGPSSG 106
Score = 63.1 bits (154), Expect = 3e-12
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 6/102 (5%)
Query: 715 VPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQ 774
P PP ++ ++TS+ ++W+ + + YY +Q+ G ++ V
Sbjct: 7 GPK-PPIDLVVTETTATSVTLTWDSGN----SEPVTYYGIQYRAAG-TEGPFQEVDGVAT 60
Query: 775 TSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDP 816
T + + L ++EY VLA SIG GP S + RT E
Sbjct: 61 TRYSIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRARTGEQSG 102
Score = 62.7 bits (153), Expect = 3e-12
Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 9/102 (8%)
Query: 484 APRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLT-- 541
P D+ V +++++ + WD + +T Y + Y + Q VD T
Sbjct: 10 PPIDLVVTETTATSVTLTWDSG--NSEPVTYYGIQYRA----AGTEGPFQEVDGVATTRY 63
Query: 542 TISDLTPHTIYTIRVQAFTSVGPGPLSAPV-LVKTQQGVPSQ 582
+I L+P + Y RV A S+G GP S V +Q PS
Sbjct: 64 SIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRARTGEQSGPSS 105
Score = 46.9 bits (112), Expect = 1e-06
Identities = 23/99 (23%), Positives = 37/99 (37%), Gaps = 5/99 (5%)
Query: 624 PRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVET-YSLTGL 682
P DL + T+VTL W + Y + + + G+ T YS+ GL
Sbjct: 11 PIDLVVTETTATSVTLTWDSGNSEP--VTYYGIQYRAAGTEGPFQEVDGVATTRYSIGGL 68
Query: 683 YPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQ 721
P + Y + A + G G + + RT + P
Sbjct: 69 SPFSEYAFRVLAVNSIGRGPPSEAVRARTGE--QSGPSS 105
Score = 35.0 bits (81), Expect = 0.020
Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 14/100 (14%)
Query: 288 TTGETEPGTAPRDVQVRPLSSSTMVIQWDEP------------ETPNGQITAKHHRRIGL 335
++G + P P D+ V +++++ + WD + + +
Sbjct: 2 SSGSSGPK-PPIDLVVTETTATSVTLTWDSGNSEPVTYYGIQYRAAGTEGPFQEVDGVA- 59
Query: 336 VETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQ 375
YS+ GL P + Y + A + G G + + RT +
Sbjct: 60 TTRYSIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRARTGE 99
Score = 32.7 bits (75), Expect = 0.12
Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Query: 850 VSDGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKP-ETIKTPGGVP 897
V ++ GL P + Y +V A+ G G S+ P
Sbjct: 55 VDGVATTRYSIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRARTGEQSGP 103
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding
homology region (CHR), cell MEMB disease mutation,
glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo
sapiens}
Length = 483
Score = 112 bits (280), Expect = 4e-26
Identities = 40/303 (13%), Positives = 84/303 (27%), Gaps = 41/303 (13%)
Query: 100 VRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRNV 159
+ +P + P +++ S + CV+ + + P L
Sbjct: 193 ISWIPDSQTKVFPQDKVILVGSDITFCCVSQEKVLSALIGHT-----NCPLIHLDGENVA 247
Query: 160 LTLDRVTESENYTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISEVTATSVRL 219
+ + ++ S + T++ P P + +
Sbjct: 248 IKIRNISVSASSGTNVVFTTEDNIFGTVIFAG-------YPPDTPQQLNCETHDLKEIIC 300
Query: 220 DWTYPSETLLY------YVIQYKP--KAANTPYSEISGIITTYYTVRNLSPYTEYEFYII 271
W T L Y + K +E + + L Y F +
Sbjct: 301 SWNPGRVTALVGPRATSYTLVESFSGKYVRLKRAEAPTNESYQLLFQMLPNQEIYNFTLN 360
Query: 272 AVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQI------ 325
A N LGR S ++ E P +V+ ++S+ + + W P
Sbjct: 361 AHNPLGRS--QSTILVNITEKVYPHTPTSFKVKDINSTAVKLSWHLPGNFAKINFLCEIE 418
Query: 326 ----TAKHHRRIGLVE-------TYSLTGLYPNTLYYIWL--AAQSPRGEGATTPPIPVR 372
+ +R ++ +L L P TLY + + ++ +
Sbjct: 419 IKKSNSVQEQRNVTIQGVENSSYLVALDKLNPYTLYTFRIRCSTETFWKWSKWSNKKQHL 478
Query: 373 TKQ 375
T +
Sbjct: 479 TTE 481
Score = 111 bits (277), Expect = 9e-26
Identities = 60/428 (14%), Positives = 124/428 (28%), Gaps = 70/428 (16%)
Query: 453 YYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRP-LSSSTMVIQWDEP--ETPN 509
Y I + + G + + + P T P +Q+ S+ST+ ++W++ P+
Sbjct: 57 YEITINSLHDFGSSTSKFTLNEQNVSLIPDT-PEILQLSADFSTSTLYLKWNDRGSVFPH 115
Query: 510 GQITGYKVYYTQDQSLPMSAWETQVVDNNQLTTISDLT-------PHTIYTIRVQAFTSV 562
+++ + +S+ + T N T+ + I+ + ++ +
Sbjct: 116 RSNVIWEIKVLRKESMELVKLVTHQTTLNGKDTLHHWSWASDMPLECAIHFVEIRCYIDN 175
Query: 563 ----GPGPLSAPVLVKTQQGVPSQP---------------------------------RD 585
G S VK +P +
Sbjct: 176 LHFSGLEEWSDWSPVKQISWIPDSQTKVFPQDKVILVGSDITFCCVSQEKVLSALIGHTN 235
Query: 586 LRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYA-----------KPRDLRAVDIQE 634
+ + V + + S + + D P+ L
Sbjct: 236 CPLIHLDGENVAIKIRNISVSASSGTNVVFTTEDNIFGTVIFAGYPPDTPQQLNCETHDL 295
Query: 635 TAVTLAWSKPTH---SGENIISYEL-YWNDTYAKAKHHRRIGLVETYS--LTGLYPNTLY 688
+ +W+ G SY L E+Y L +Y
Sbjct: 296 KEIICSWNPGRVTALVGPRATSYTLVESFSGKYVRLKRAEAPTNESYQLLFQMLPNQEIY 355
Query: 689 YIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGH 748
L A +P G I V + V P + + ++ST++++SW P
Sbjct: 356 NFTLNAHNPLGRS--QSTILVNITEKVYPHTPTSFKVKDINSTAVKLSWHLPGNFAKINF 413
Query: 749 IVYYKLQFVETGRSDSEASIVTLKN-QTSFVLDELKKWTEYRIWVLAGT--SIGDGPSSY 805
+ +++ + + +I ++N LD+L +T Y + T S
Sbjct: 414 LCEIEIKKSNSVQEQRNVTIQGVENSSYLVALDKLNPYTLYTFRIRCSTETFWKWSKWSN 473
Query: 806 PITIRTHE 813
T E
Sbjct: 474 KKQHLTTE 481
Score = 102 bits (256), Expect = 4e-23
Identities = 70/534 (13%), Positives = 148/534 (27%), Gaps = 79/534 (14%)
Query: 206 DVKISEVTATSVRLDWTYPSET--LLYYVIQYKPKAANTPYSEISGIITTYYTVRNLSPY 263
D+K + W PS T Y + + ++ + E T + LS
Sbjct: 1 DLKCVTNNLQVWQCSWKAPSGTGRGTDYEVCIEQRSRSCYQLE-----KTSIKIPALSH- 54
Query: 264 TEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRP-LSSSTMVIQWDEPETPN 322
+YE I ++++ G P T P +Q+ S+ST+ ++W++ +
Sbjct: 55 GDYEITINSLHDFGSSTSKFTLNEQNVSLIPDT-PEILQLSADFSTSTLYLKWNDRGSVF 113
Query: 323 G---------QITAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRT 373
++ K + + T+ T +TL++ A+ P I
Sbjct: 114 PHRSNVIWEIKVLRKESMELVKLVTHQTTLNGKDTLHHWSWASDMPLECAIHFVEIRCYI 173
Query: 374 KQYGKTPGFGEQAAKHHRRIGLVETYSLTGLYPN---------TLYYIWLAAQSPRGEGA 424
+ ++I + + T + G
Sbjct: 174 DNLHFSGLEEWSDWSPVKQISWIPDSQTKVFPQDKVILVGSDITFCCVSQEKVLSALIGH 233
Query: 425 TTPPIPVRTKQYGKTPGFGEQALYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTA 484
T P+ G+ + + + + + T P
Sbjct: 234 TNCPLIHLD---GENVAIKIRNISVSASSGTNVVFTTEDNIFGT------VIFAGYPPDT 284
Query: 485 PRDVQVRPLSSSTMVIQWDEPE---TPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLT 541
P+ + ++ W+ + T Y + + + +
Sbjct: 285 PQQLNCETHDLKEIICSWNPGRVTALVGPRATSYTLVESFSGKYVRLKRAEAPTNESYQL 344
Query: 542 TISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLAWS 601
L IY + A +G S ++ T++ P P + DI TAV L+W
Sbjct: 345 LFQMLPNQEIYNFTLNAHNPLGRSQ-STILVNITEKVYPHTPTSFKVKDINSTAVKLSWH 403
Query: 602 KPTHSGENIISYELYWNDTYAKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDT 661
P + + E+ + + ++ + N +
Sbjct: 404 LPGNFAKINFLCEIEI-----------------------KKSNSVQEQRNVTIQGVENSS 440
Query: 662 YAKAKHHRRIGLVETYSLTGLYPNTLYYIWL--AAQSPRGEGATTPPIPVRTKQ 713
Y +L L P TLY + + ++ + T +
Sbjct: 441 Y-------------LVALDKLNPYTLYTFRIRCSTETFWKWSKWSNKKQHLTTE 481
Score = 82.6 bits (203), Expect = 1e-16
Identities = 54/452 (11%), Positives = 116/452 (25%), Gaps = 62/452 (13%)
Query: 166 TESENYTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKIS-EVTATSVRLDWT-- 222
T + G + + Q + +P P +++S + + +++ L W
Sbjct: 54 HGDYEITINSLHDFGSSTSKFTLNEQ----NVSLIPDTPEILQLSADFSTSTLYLKWNDR 109
Query: 223 ---YPSETLLYYVIQYKPK---------AANTPYSEISGIITTYYTVRNLSPYTEYEFYI 270
+P + + + I+ K T + + + + I
Sbjct: 110 GSVFPHRSNVIWEIKVLRKESMELVKLVTHQTTLNGKDTLHHWSWASDMPLECAIHFVEI 169
Query: 271 IAVNNLGRGPPSSP--------AVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEPETP- 321
+ + +++ P+D + S T E
Sbjct: 170 RCYIDNLHFSGLEEWSDWSPVKQISWIPDSQTKVFPQDKVILVGSDITFCCVSQEKVLSA 229
Query: 322 -NGQITAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATT-----PP-----IP 370
G G + + + + + T PP +
Sbjct: 230 LIGHTNCPLIHLDGENVAIKIRNISVSASSGTNVVFTTEDNIFGTVIFAGYPPDTPQQLN 289
Query: 371 VRTKQYGKTPGFGEQAAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIP 430
T + +Y TL
Sbjct: 290 CETHDLKEIICSWNPGRVTALVGPRATSY--------TLVE-----SFSGKYVRLKRAEA 336
Query: 431 VRTKQYGKTPGFGEQALYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQV 490
+ Y Q L +Y L A +P G I V + P +V
Sbjct: 337 PTNESYQLLF----QMLPNQEIYNFTLNAHNPLGRS--QSTILVNITEKVYPHTPTSFKV 390
Query: 491 RPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLP--MSAWETQVVDNNQLTTISDLTP 548
+ ++S+ + + W P ++ + S+ + V +++ L + L P
Sbjct: 391 KDINSTAVKLSWHLPGNFAKINFLCEIEIKKSNSVQEQRNVTIQGVENSSYLVALDKLNP 450
Query: 549 HTIYTIRVQAFT--SVGPGPLSAPVLVKTQQG 578
+T+YT R++ T S T +
Sbjct: 451 YTLYTFRIRCSTETFWKWSKWSNKKQHLTTEA 482
Score = 42.1 bits (98), Expect = 8e-04
Identities = 51/424 (12%), Positives = 103/424 (24%), Gaps = 47/424 (11%)
Query: 487 DVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLTTISDL 546
D++ + W P G+ T Y+V + I L
Sbjct: 1 DLKCVTNNLQVWQCSWKAPSG-TGRGTDYEVCI-------EQRSRSCYQLEKTSIKIPAL 52
Query: 547 TPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPSQPRDLR-AVDIQETAVTLAWSKPTH 605
+ Y I + + G + + +P P L+ + D + + L W+
Sbjct: 53 SHGD-YEITINSLHDFGSSTSKFTLNEQNVSLIPDTPEILQLSADFSTSTLYLKWNDRGS 111
Query: 606 SGENIISYELYWNDTYAKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKA 665
+ + + +L + +T + + S + + E
Sbjct: 112 VFPHRSNVIWEIKVLRKESMELVKLVTHQTTLNGKDTLHHWSWASDMPLECA-------- 163
Query: 666 KHHRRIGLVETYSLTGLYPNTLYYI-WLAAQSPRGEGATTPPIPVRTKQYVPGAPPQNVS 724
H I Y + + W + + + PQ+
Sbjct: 164 IHFVEI---RCYIDNLHFSGLEEWSDWSPVKQISWIPDSQTKVF-----------PQDKV 209
Query: 725 CEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFVLDELKK 784
S + + + GH + D E + ++N +
Sbjct: 210 ILVGSDITFCCVSQEKVLSALIGHTNCPLIHL------DGENVAIKIRNISVSASSGTNV 263
Query: 785 WTEYRIWVLAGTSIGDGPSSYPITIRTHEDDPSEV-----CPTQNDFRKNKKTNGSNF-- 837
+ P P + D E+ + T+ +
Sbjct: 264 VFTTEDNIFGTVIFAGYPPDTPQQLNCETHDLKEIICSWNPGRVTALVGPRATSYTLVES 323
Query: 838 KGGYLNDPMRFDVSDGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKTPGGVP 897
G R + + +L L IY + A G S T P
Sbjct: 324 FSGKYVRLKRAEAPTNESYQLLFQMLPNQEIYNFTLNAHNPLGRSQ-STILVNITEKVYP 382
Query: 898 NRPH 901
+ P
Sbjct: 383 HTPT 386
Score = 29.0 bits (64), Expect = 8.3
Identities = 5/29 (17%), Positives = 12/29 (41%)
Query: 36 APRDVQVRPLSSSTMVIQWDEPETPNGQI 64
P +V+ ++S+ + + W P
Sbjct: 384 TPTSFKVKDINSTAVKLSWHLPGNFAKIN 412
>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling
complex, extracellular space, IM system receptor; HET:
NAG; 3.50A {Homo sapiens} PDB: 3se3_A*
Length = 414
Score = 110 bits (276), Expect = 6e-26
Identities = 51/380 (13%), Positives = 105/380 (27%), Gaps = 45/380 (11%)
Query: 447 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMV-IQWDEP 505
L + + A+ + + P +V + + ++ I
Sbjct: 72 LNVYEEIKLRIRAEKENTSSWYEVDSFTPFR--KAQIGPPEVHLEAEDKAIVIHISPGTK 129
Query: 506 ETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVG-- 563
++ + G Y+ S E ++ + I L+P T Y ++V+A
Sbjct: 130 DSVMWALDGLSFTYSLVIWKNSSGVEERIENIYSRHKIYKLSPETTYCLKVKAALLTSWK 189
Query: 564 PGPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAK 623
G S +KT P + V +Q L W + + + +
Sbjct: 190 IGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKWDYTYANMTFQVQWLHAF------ 243
Query: 624 PRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVETYSLTGLY 683
+ + + + + ++
Sbjct: 244 ---------------------------LKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVF 276
Query: 684 PNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVE 743
+Y + + A + I T+ PP + LS S I P
Sbjct: 277 QKGIYLLRVQASDGNNTSFWSEEIKFDTEIQAFLLPP-VFNIRSLS-DSFHIYIGAPKQS 334
Query: 744 RSNGHIVYYKLQF-VETGRSDSEASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSIGD-- 800
+ I Y L + + + S A ++ +T + LK T Y + A T
Sbjct: 335 GNTPVIQDYPLIYEIIFWENTSNAERKIIEKKTDVTVPNLKPLTVYCVKARAHTMDEKLN 394
Query: 801 --GPSSYPITIRTHEDDPSE 818
S + +T + S+
Sbjct: 395 KSSVFSDAVCEKTKPGNTSK 414
Score = 96.6 bits (239), Expect = 2e-21
Identities = 56/416 (13%), Positives = 122/416 (29%), Gaps = 49/416 (11%)
Query: 203 APLDVKISEVTATSVRLDWTYPSET--LLYYVIQYKPKAANT--PYSEISGIITTY--YT 256
+P V++ + + L W E+ + + Y+ + S I +T ++
Sbjct: 10 SPQKVEVDIIDDNFI-LRWNRSDESVGNVTFSFDYQKTGMDNWIKLSGCQNITSTKCNFS 68
Query: 257 VRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMV---- 312
L+ Y E + I A + + + P +V + + ++
Sbjct: 69 SLKLNVYEEIKLRIRAEKENTSSWYEVDSFTPFRKAQI--GPPEVHLEAEDKAIVIHISP 126
Query: 313 -IQWDEPETPNGQI-----------TAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPR 360
+ +G + R + + + L P T Y + + A
Sbjct: 127 GTKDSVMWALDGLSFTYSLVIWKNSSGVEERIENIYSRHKIYKLSPETTYCLKVKAALLT 186
Query: 361 GEGATTPPIPVRTKQYGKTPGFGEQAAKHHRRIGLVETYSLTGLYP-----NTLYYIWLA 415
K + ++ + Y L Y + ++
Sbjct: 187 SWKIGVYSPVHCIKTTVENE---LPPPENIEVSVQNQNYVLKWDYTYANMTFQVQWLHAF 243
Query: 416 AQSPRGEGATTPPIPVRTKQYGKTPGFGEQALYPNTLYYIWLAAQSPRGEGATTPPIPVR 475
+ G + T Q ++ +Y + + A + I
Sbjct: 244 LKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFD 303
Query: 476 TKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQIT------GYKVYYTQDQSLPMSA 529
T+ P +R LS S + P+ Y++ + ++ S
Sbjct: 304 TEIQAF-LLPPVFNIRSLSDSFHI-YIGAPKQSGNTPVIQDYPLIYEIIFWENTS----N 357
Query: 530 WETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVG----PGPLSAPVLVKTQQGVPS 581
E ++++ T+ +L P T+Y ++ +A T S V KT+ G S
Sbjct: 358 AERKIIEKKTDVTVPNLKPLTVYCVKARAHTMDEKLNKSSVFSDAVCEKTKPGNTS 413
Score = 91.2 bits (225), Expect = 1e-19
Identities = 48/448 (10%), Positives = 115/448 (25%), Gaps = 75/448 (16%)
Query: 484 APRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQ--DQSLPMSAWETQVVDNNQLT 541
+P+ V+V + +++W+ + G +T + Y + + + +
Sbjct: 10 SPQKVEVD-IIDDNFILRWNRSDESVGNVT-FSFDYQKTGMDNWIKLSGCQNITSTKCNF 67
Query: 542 TISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLAWS 601
+ L + +R++A ++ P + + + ++
Sbjct: 68 SSLKLNVYEEIKLRIRAEKENTSSWYEVDSFTPFRKAQIGPPEVHLEAEDKAIVIHISPG 127
Query: 602 KPTHSGENIISYELYWNDTYAKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDT 661
+ ++ K E +
Sbjct: 128 TKDSVMWALDGLSFTYSLVIWKNSS--------------------------GVEERIENI 161
Query: 662 YAKAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRG--EGATTPPIPVRTKQYVPGAP 719
Y + + L P T Y + + A G +P ++T P
Sbjct: 162 Y------------SRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPP 209
Query: 720 PQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTS--- 776
P+N+ + + + W+ + V + F++ + + + +
Sbjct: 210 PENIEVSVQNQNYV-LKWDYTY--ANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKT 266
Query: 777 ---FVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDPS-----EVCPTQNDFR- 827
+ + Y + V A S I T + + F
Sbjct: 267 TQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDTEIQAFLLPPVFNIRSLSDSFHI 326
Query: 828 -------KNKKTNGSNFKGGYL-----NDPMRFDVSDGGALELNVTGLQPDTIYTIQVAA 875
++ Y N ++ V L+P T+Y ++ A
Sbjct: 327 YIGAPKQSGNTPVIQDYPLIYEIIFWENTSNAERKIIEKKTDVTVPNLKPLTVYCVKARA 386
Query: 876 LTRKGD----GDRSKPETIKTPGGVPNR 899
T S KT G ++
Sbjct: 387 HTMDEKLNKSSVFSDAVCEKTKPGNTSK 414
Score = 77.7 bits (190), Expect = 3e-15
Identities = 52/444 (11%), Positives = 111/444 (25%), Gaps = 73/444 (16%)
Query: 297 APRDVQVRPLSSSTMVIQWDEPETPNGQIT----------------AKHHRRIGLVETYS 340
+P+ V+V + +++W+ + G +T + +S
Sbjct: 10 SPQKVEVD-IIDDNFILRWNRSDESVGNVTFSFDYQKTGMDNWIKLSGCQNITSTKCNFS 68
Query: 341 LTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYGKTPGFGEQAAKHHRRIGLVETYS 400
L + + A+ ++ P + I + +
Sbjct: 69 SLKLNVYEEIKLRIRAEKENTSSWYEVDSFTPFRKAQIGP-PEVHLEAEDKAIVIHISPG 127
Query: 401 LTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYGKTPGFGEQALYPNTLYYIWLAAQ 460
L + + ++ + L P T Y + + A
Sbjct: 128 TKDSVMWALDGLSFTYSLVIWKNSSGVEERIENIYSRHKIYK----LSPETTYCLKVKAA 183
Query: 461 SPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLS-SSTMVIQWDEPETPNGQITGYKVYY 519
K P + + V++WD + +
Sbjct: 184 LLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKWDYTYANMTFQVQWLHAF 243
Query: 520 TQDQSL-PMSAWETQVVDNNQLTTISDLT----PHTIYTIRVQAFTSVGPGPLSAPVLVK 574
+ + W+ N TT IY +RVQA S +
Sbjct: 244 LKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFD 303
Query: 575 TQQGVPSQPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKPRDLRAVDIQE 634
T+ P + + + P SG + +
Sbjct: 304 TEIQAFLLPPVF-NIRSLSDSFHIYIGAPKQSGNTPVIQDY------------------- 343
Query: 635 TAVTLAWSKPTHSGENIISYEL-YWNDTYAKAKHHRRIGLVET-YSLTGLYPNTLYYIWL 692
+ YE+ +W +T + R+I +T ++ L P T+Y +
Sbjct: 344 ----------------PLIYEIIFWENT---SNAERKIIEKKTDVTVPNLKPLTVYCVKA 384
Query: 693 AAQSPRG----EGATTPPIPVRTK 712
A + + + +TK
Sbjct: 385 RAHTMDEKLNKSSVFSDAVCEKTK 408
Score = 60.8 bits (146), Expect = 9e-10
Identities = 41/308 (13%), Positives = 86/308 (27%), Gaps = 33/308 (10%)
Query: 622 AKPRDLRAVDIQETAVTLAWSKPTHSGENI---ISYELYWNDTYAKAKHHRRIGLVE-TY 677
P+ + VDI + L W++ S N+ Y+ D + K + I + +
Sbjct: 9 KSPQKVE-VDIIDDNFILRWNRSDESVGNVTFSFDYQKTGMDNWIKLSGCQNITSTKCNF 67
Query: 678 SLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISW 737
S L + + A+ ++ G P ++ E +I I
Sbjct: 68 SSLKLNVYEEIKLRIRAEKENTSSWYEVDSFTPFRKAQIGPPEVHLEAED---KAIVIHI 124
Query: 738 EPPPVERSNGHIVYYKLQF-VETGRSDSEASIVTLKNQTSFVLDELKKWTEYRIWVLAGT 796
P + + + + ++ S + + +L T Y + V A
Sbjct: 125 SPGTKDSVMWALDGLSFTYSLVIWKNSSGVEERIENIYSRHKIYKLSPETTYCLKVKAAL 184
Query: 797 SIGDGPSSYPITIRTHEDDPSEVCPTQNDFRKNKKTN----------GSNFKGGYLNDPM 846
Y +E+ P +N + N F+ +L+ +
Sbjct: 185 LTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKWDYTYANMTFQVQWLHAFL 244
Query: 847 RFDVSDGGALELNV--------------TGLQPDTIYTIQVAALTRKGDGDRSKPETIKT 892
+ + + + + IY ++V A S+ T
Sbjct: 245 KRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDT 304
Query: 893 PGGVPNRP 900
P
Sbjct: 305 EIQAFLLP 312
>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 116
Score = 101 bits (253), Expect = 1e-25
Identities = 31/120 (25%), Positives = 50/120 (41%), Gaps = 8/120 (6%)
Query: 464 GEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQ 523
G ++ P + P P + VRP ++ +++ W P PN + GY + Y
Sbjct: 1 GSSGSSGPENDLDESQVPD-QPSSLHVRPQTNC-IIMSWTPPLNPNIVVRGYIIGYGVG- 57
Query: 524 SLPMSAWETQVVDNNQLT-TISDLTPHTIYTIRVQAFTSVGPG-PLSAPVLVKTQQGVPS 581
ET VD+ Q +I L + Y I ++AF + G G PL ++ PS
Sbjct: 58 ---SPYAETVRVDSKQRYYSIERLESSSHYVISLKAFNNAGEGVPLYESATTRSITSGPS 114
Score = 91.0 bits (226), Expect = 6e-22
Identities = 25/121 (20%), Positives = 46/121 (38%), Gaps = 7/121 (5%)
Query: 699 GEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVE 758
G ++ P + VP P ++ P + I +SW PP N + Y + +
Sbjct: 1 GSSGSSGPENDLDESQVPD-QPSSLHVRP-QTNCIIMSWTPP--LNPNIVVRGYIIGYGV 56
Query: 759 TGRSDSEASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDG-PSSYPITIRTHEDDPS 817
+ + Q + ++ L+ + Y I + A + G+G P T R+ PS
Sbjct: 57 GSPYAETVRVDS--KQRYYSIERLESSSHYVISLKAFNNAGEGVPLYESATTRSITSGPS 114
Query: 818 E 818
Sbjct: 115 S 115
Score = 71.7 bits (176), Expect = 3e-15
Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 5/99 (5%)
Query: 199 TLPVAPLDVKISEVTATSVRLDWTYPSET---LLYYVIQYKPKAANTPYSEISGIITTYY 255
+P P + + + + WT P + Y+I Y + + YY
Sbjct: 16 QVPDQPSSLHV-RPQTNCIIMSWTPPLNPNIVVRGYIIGYGVGSPYAETVRVDSK-QRYY 73
Query: 256 TVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEP 294
++ L + Y + A NN G G P + T T
Sbjct: 74 SIERLESSSHYVISLKAFNNAGEGVPLYESATTRSITSG 112
Score = 69.0 bits (169), Expect = 3e-14
Identities = 27/160 (16%), Positives = 44/160 (27%), Gaps = 45/160 (28%)
Query: 563 GPGPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYA 622
G S P + VP QP L
Sbjct: 1 GSSGSSGPENDLDESQVPDQPSSLH----------------------------------- 25
Query: 623 KPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVETYSLTGL 682
V Q + ++W+ P + + Y + + A+ R YS+ L
Sbjct: 26 -------VRPQTNCIIMSWTPPLNPNIVVRGYIIGYGVGSPYAETVRVDSKQRYYSIERL 78
Query: 683 YPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQN 722
++ Y I L A + GEG P+ + P +
Sbjct: 79 ESSSHYVISLKAFNNAGEG---VPLYESATTRSITSGPSS 115
Score = 68.6 bits (168), Expect = 4e-14
Identities = 28/121 (23%), Positives = 42/121 (34%), Gaps = 19/121 (15%)
Query: 277 GRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITA---KHHRRI 333
G S P P P + VRP ++ +++ W P PN + +
Sbjct: 1 GSSGSSGPENDLDESQVPD-QPSSLHVRPQTNC-IIMSWTPPLNPNIVVRGYIIGYGVGS 58
Query: 334 GLVET---------YSLTGLYPNTLYYIWLAAQSPRGEGATTPPI--PVRTKQYGKTPGF 382
ET YS+ L ++ Y I L A + GEG P+ T+ P
Sbjct: 59 PYAETVRVDSKQRYYSIERLESSSHYVISLKAFNNAGEG---VPLYESATTRSITSGPSS 115
Query: 383 G 383
G
Sbjct: 116 G 116
Score = 42.4 bits (100), Expect = 6e-05
Identities = 20/113 (17%), Positives = 32/113 (28%), Gaps = 14/113 (12%)
Query: 799 GDGPSSYPITIRTHEDDPS-----EVCPTQN----DFRKNKKTNG--SNFKGGY--LNDP 845
G SS P P V P N + N + GY +
Sbjct: 1 GSSGSSGPENDLDESQVPDQPSSLHVRPQTNCIIMSWTPPLNPNIVVRGYIIGYGVGSPY 60
Query: 846 MRFDVSDGGALELNVTGLQPDTIYTIQVAALTRKGDGD-RSKPETIKTPGGVP 897
D ++ L+ + Y I + A G+G + T ++ P
Sbjct: 61 AETVRVDSKQRYYSIERLESSSHYVISLKAFNNAGEGVPLYESATTRSITSGP 113
Score = 35.1 bits (81), Expect = 0.020
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 36 APRDVQVRPLSSSTMVIQWDEPETPNGQITH 66
P + VRP ++ +++ W P PN +
Sbjct: 20 QPSSLHVRPQTNC-IIMSWTPPLNPNIVVRG 49
Score = 30.1 bits (68), Expect = 1.2
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Query: 447 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAP 485
L ++ Y I L A + GEG P+ + P
Sbjct: 78 LESSSHYVISLKAFNNAGEG---VPLYESATTRSITSGP 113
>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase
receptor HTK, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 109
Score = 97.9 bits (244), Expect = 2e-24
Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 3/107 (2%)
Query: 476 TKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVV 535
+ P A D++V S S++ + W P P+G + Y+V Y + + S+
Sbjct: 3 SGSSGPP-AVSDIRVTRSSPSSLSLAWAVPRAPSGAVLDYEVKYHEKGAEGPSSVRFLKT 61
Query: 536 DNNQLTTISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQ-GVPS 581
N+ + L Y ++V+A + G GP +TQ PS
Sbjct: 62 SENR-AELRGLKRGASYLVQVRARSEAGYGPFGQEHHSQTQLDSGPS 107
Score = 92.5 bits (230), Expect = 1e-22
Identities = 21/107 (19%), Positives = 42/107 (39%), Gaps = 3/107 (2%)
Query: 711 TKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVT 770
+ P A ++ S +S+ ++W P +G ++ Y++++ E G +
Sbjct: 3 SGSSGPPAVS-DIRVTRSSPSSLSLAWAVP--RAPSGAVLDYEVKYHEKGAEGPSSVRFL 59
Query: 771 LKNQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDPS 817
++ L LK+ Y + V A + G GP +T D
Sbjct: 60 KTSENRAELRGLKRGASYLVQVRARSEAGYGPFGQEHHSQTQLDSGP 106
Score = 71.0 bits (174), Expect = 5e-15
Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 4/98 (4%)
Query: 201 PVAPLDVKISEVTATSVRLDWTYPSET---LLYYVIQYKPKAANTPYSEISGIIT-TYYT 256
P A D++++ + +S+ L W P +L Y ++Y K A P S +
Sbjct: 8 PPAVSDIRVTRSSPSSLSLAWAVPRAPSGAVLDYEVKYHEKGAEGPSSVRFLKTSENRAE 67
Query: 257 VRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEP 294
+R L Y + A + G GP T
Sbjct: 68 LRGLKRGASYLVQVRARSEAGYGPFGQEHHSQTQLDSG 105
Score = 65.6 bits (160), Expect = 4e-13
Identities = 22/140 (15%), Positives = 39/140 (27%), Gaps = 41/140 (29%)
Query: 575 TQQGVPSQPRDLRAVDIQETAVTLAWSKPTHSGENIISYEL-YWNDTYAKPRDLRAVDIQ 633
+ P D+R ++++LAW+ P ++ YE+ Y P +R +
Sbjct: 3 SGSSGPPAVSDIRVTRSSPSSLSLAWAVPRAPSGAVLDYEVKYHEKGAEGPSSVRFLKTS 62
Query: 634 ETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVETYSLTGLYPNTLYYIWLA 693
E L GL Y + +
Sbjct: 63 ENRAE----------------------------------------LRGLKRGASYLVQVR 82
Query: 694 AQSPRGEGATTPPIPVRTKQ 713
A+S G G +T+
Sbjct: 83 ARSEAGYGPFGQEHHSQTQL 102
Score = 65.2 bits (159), Expect = 4e-13
Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 15/102 (14%)
Query: 288 TTGETEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQIT--------------AKHHRRI 333
++G + P A D++V S S++ + W P P+G + +
Sbjct: 2 SSGSSGPP-AVSDIRVTRSSPSSLSLAWAVPRAPSGAVLDYEVKYHEKGAEGPSSVRFLK 60
Query: 334 GLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQ 375
L GL Y + + A+S G G +T+
Sbjct: 61 TSENRAELRGLKRGASYLVQVRARSEAGYGPFGQEHHSQTQL 102
Score = 44.4 bits (105), Expect = 9e-06
Identities = 10/51 (19%), Positives = 16/51 (31%)
Query: 843 NDPMRFDVSDGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKTP 893
P + GL+ Y +QV A + G G + +T
Sbjct: 51 EGPSSVRFLKTSENRAELRGLKRGASYLVQVRARSEAGYGPFGQEHHSQTQ 101
Score = 37.8 bits (88), Expect = 0.002
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 36 APRDVQVRPLSSSTMVIQWDEPETPNGQIT 65
A D++V S S++ + W P P+G +
Sbjct: 10 AVSDIRVTRSSPSSLSLAWAVPRAPSGAVL 39
Score = 31.3 bits (71), Expect = 0.36
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 447 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQ 478
L Y + + A+S G G +T+
Sbjct: 71 LKRGASYLVQVRARSEAGYGPFGQEHHSQTQL 102
>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2,
NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 108
Score = 96.7 bits (241), Expect = 4e-24
Identities = 22/108 (20%), Positives = 44/108 (40%), Gaps = 5/108 (4%)
Query: 475 RTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQV 534
+ P + + ++ + W +PE PNG I Y++ Y + + + + + +
Sbjct: 2 SSGSSGPS-TVPIMHQVSATMRSITLSWPQPEQPNGIILDYEIRYYEKEH---NEFNSSM 57
Query: 535 VDNNQLT-TISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPS 581
+ T I L P +Y ++V+A T G G S + +T
Sbjct: 58 ARSQTNTARIDGLRPGMVYVVQVRARTVAGYGKFSGKMCFQTLTDSGP 105
Score = 89.4 bits (222), Expect = 2e-21
Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 4/109 (3%)
Query: 710 RTKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIV 769
+ P P + + SI +SW P E+ NG I+ Y++++ E ++ +S+
Sbjct: 2 SSGSSGPSTVP-IMHQVSATMRSITLSWPQP--EQPNGIILDYEIRYYEKEHNEFNSSMA 58
Query: 770 TLKNQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDPSE 818
+ +D L+ Y + V A T G G S + +T D
Sbjct: 59 R-SQTNTARIDGLRPGMVYVVQVRARTVAGYGKFSGKMCFQTLTDSGPS 106
Score = 69.4 bits (170), Expect = 1e-14
Identities = 22/100 (22%), Positives = 33/100 (33%), Gaps = 3/100 (3%)
Query: 201 PVAPLDVKISEVTATSVRLDWTYPSET---LLYYVIQYKPKAANTPYSEISGIITTYYTV 257
P + T S+ L W P + +L Y I+Y K N S ++ T +
Sbjct: 8 PSTVPIMHQVSATMRSITLSWPQPEQPNGIILDYEIRYYEKEHNEFNSSMARSQTNTARI 67
Query: 258 RNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTA 297
L P Y + A G G S T ++
Sbjct: 68 DGLRPGMVYVVQVRARTVAGYGKFSGKMCFQTLTDSGPSS 107
Score = 66.3 bits (162), Expect = 2e-13
Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 14/101 (13%)
Query: 288 TTGETEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQIT-------------AKHHRRIG 334
++G + P + + ++ + W +PE PNG I
Sbjct: 2 SSGSSGPS-TVPIMHQVSATMRSITLSWPQPEQPNGIILDYEIRYYEKEHNEFNSSMARS 60
Query: 335 LVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQ 375
T + GL P +Y + + A++ G G + + +T
Sbjct: 61 QTNTARIDGLRPGMVYVVQVRARTVAGYGKFSGKMCFQTLT 101
Score = 65.5 bits (160), Expect = 3e-13
Identities = 19/101 (18%), Positives = 41/101 (40%), Gaps = 4/101 (3%)
Query: 623 KPRDLRAVDIQETAVTLAWSKPTHSGENIISYEL-YWNDTYAKAKHHRRIGLVETYSLTG 681
+ V ++TL+W +P I+ YE+ Y+ + + T + G
Sbjct: 10 TVPIMHQVSATMRSITLSWPQPEQPNGIILDYEIRYYEKEHNEFNSSMARSQTNTARIDG 69
Query: 682 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQN 722
L P +Y + + A++ G G + + +T + + P +
Sbjct: 70 LRPGMVYVVQVRARTVAGYGKFSGKMCFQT---LTDSGPSS 107
Score = 45.5 bits (108), Expect = 3e-06
Identities = 12/48 (25%), Positives = 19/48 (39%)
Query: 850 VSDGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKTPGGVP 897
++ + GL+P +Y +QV A T G G S +T
Sbjct: 57 MARSQTNTARIDGLRPGMVYVVQVRARTVAGYGKFSGKMCFQTLTDSG 104
Score = 36.3 bits (84), Expect = 0.007
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 36 APRDVQVRPLSSSTMVIQWDEPETPNGQITH 66
+ + ++ + W +PE PNG I
Sbjct: 10 TVPIMHQVSATMRSITLSWPQPEQPNGIILD 40
Score = 33.6 bits (77), Expect = 0.054
Identities = 7/38 (18%), Positives = 17/38 (44%)
Query: 447 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTA 484
L P +Y + + A++ G G + + +T ++
Sbjct: 70 LRPGMVYVVQVRARTVAGYGKFSGKMCFQTLTDSGPSS 107
>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy,
decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo
sapiens} PDB: 3lb6_D*
Length = 380
Score = 101 bits (253), Expect = 3e-23
Identities = 44/387 (11%), Positives = 91/387 (23%), Gaps = 69/387 (17%)
Query: 446 ALYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVR-PLSSSTMVIQWDE 504
L LY ++ + T P+D ++ P + +QW
Sbjct: 5 CLAVGCLYTFLISTTFGCTSSSDTEIKV---------NPPQDFEIVDPGYLGYLYLQWQP 55
Query: 505 PETPNGQ---ITGYKVYYTQDQSLPMSAWETQVVDNNQLTTISDLTPHTIYTIRVQAF-- 559
P + + Y++ Y S W+T + N DL I
Sbjct: 56 PLSLDHFKECTVEYELKYRNIGS---ETWKTIITKNLHYKDGFDLNKGIEAXIHTLLPWQ 112
Query: 560 ---TSVGPGPLSAPVLVKTQQG-VPSQPRDLRAVDIQETAVTLAWSKPTHSGENIISYEL 615
S + + QG + +D+ V + +W +
Sbjct: 113 CTNGSEVQSSWAETTYWISPQGIPETXVQDMDCVYYNWQYLLCSWKPGIGVLLDTNYNLF 172
Query: 616 YWNDTYAKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVE 675
YW + + + + +
Sbjct: 173 YWYEGLDHALQ----------------CVDYIKADGQNIGCRFPYLE------------- 203
Query: 676 TYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRI 735
+YI + S + + + V PP ++ SS I++
Sbjct: 204 ------ASDYKDFYICVNGSSENK-PIRSSYFTFQLQNIVKPLPPVYLTFTRESSCEIKL 256
Query: 736 SWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFVLDELKKWTEYRIWVLAG 795
W P Y+++ R D + ++ L + + V +
Sbjct: 257 KWSIPL-GPIPARCFDYEIEI----REDDTTLVTATVENETYTLKTTNETRQLCFVVRSK 311
Query: 796 TSIGDGPSSY------PITIRTHEDDP 816
+I +
Sbjct: 312 VNIYCSDDGIWSEWSDKQCWEGEDLSK 338
Score = 71.8 bits (175), Expect = 3e-13
Identities = 36/310 (11%), Positives = 70/310 (22%), Gaps = 36/310 (11%)
Query: 624 PRDLRAVDIQETA-VTLAWSKPT---HSGENIISYELYWNDTYAKAKHHRRIGLVETYSL 679
P+D VD + L W P H E + YEL + + ++ +
Sbjct: 35 PQDFEIVDPGYLGYLYLQWQPPLSLDHFKECTVEYELKYRNIGSETWKTIITKNLHYKDG 94
Query: 680 TGLYPNTLYYIW--LAAQSPRGEGATTPPIPVRTKQYVPG---APPQNVSCEPLSSTSIR 734
L I L Q G + G Q++ C + +
Sbjct: 95 FDLNKGIEAXIHTLLPWQCTNGSEVQSSWAETTYWISPQGIPETXVQDMDCVYYNWQYLL 154
Query: 735 ISWEPPPVE-RSNGHIVYYKLQFVETGRSDSEASIVTLKNQT-SFVLDELKKWTEYRIWV 792
SW+P + ++Y + ++ + +N F E + ++ I V
Sbjct: 155 CSWKPGIGVLLDTNYNLFYWYEGLDHALQCVDYIKADGQNIGCRFPYLEASDYKDFYICV 214
Query: 793 LAGTSIGDGPSSYPITIRTHEDDPSEVCPTQNDFRKNKKTN---------GSNFKGG--- 840
+ S T + P + +
Sbjct: 215 NGSSENK-PIRSSYFTFQLQNIVKPL--PPVYLTFTRESSCEIKLKWSIPLGPIPARCFD 271
Query: 841 ----YLNDPMRFDVSDGGALELNVTGLQPDTIYTIQVAALTRKGDGDR------SKPETI 890
D + + V + D S +
Sbjct: 272 YEIEIREDDTTLVTATVENETYTLKTTNETRQLCFVVRSKVNIYCSDDGIWSEWSDKQCW 331
Query: 891 KTPGGVPNRP 900
+
Sbjct: 332 EGEDLSKKTL 341
Score = 69.4 bits (169), Expect = 1e-12
Identities = 35/312 (11%), Positives = 78/312 (25%), Gaps = 39/312 (12%)
Query: 281 PSSPAVITTGETEPGTAPRDVQVR-PLSSSTMVIQWDEPETPNG--------QITAKHH- 330
+ ++ P+D ++ P + +QW P + + ++ ++
Sbjct: 18 TTFGCTSSSDTEIKVNPPQDFEIVDPGYLGYLYLQWQPPLSLDHFKECTVEYELKYRNIG 77
Query: 331 ------RRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYGKTPGFGE 384
+ L I G+ T + G E
Sbjct: 78 SETWKTIITKNLHYKDGFDLNKGIEAXIHTLLPWQCTNGSEVQSSWAETTYWISPQGIPE 137
Query: 385 QAAKHHRRIGLVETYSLTGL----------YPNTLYYIWLAAQSPRGEGATTPPIPVRTK 434
+ Y+ L +T Y ++ + I +
Sbjct: 138 TXVQDMD----CVYYNWQYLLCSWKPGIGVLLDTNYNLFYWYEGLDHALQCVDYIKADGQ 193
Query: 435 QYGKTPGFGEQALYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLS 494
G F +YI + S + + + P + S
Sbjct: 194 NIGCR--FPYLEASDYKDFYICVNGSSENK-PIRSSYFTFQLQNIVKPLPPVYLTFTRES 250
Query: 495 SSTMVIQWDEPETPNGQIT-GYKVYYTQDQSLPMSAWETQVVDNNQLTTISDLTPHTIYT 553
S + ++W P P Y++ +D + T V+N T+
Sbjct: 251 SCEIKLKWSIPLGPIPARCFDYEIEIREDDT----TLVTATVENET-YTLKTTNETRQLC 305
Query: 554 IRVQAFTSVGPG 565
V++ ++
Sbjct: 306 FVVRSKVNIYCS 317
Score = 61.7 bits (149), Expect = 4e-10
Identities = 25/207 (12%), Positives = 47/207 (22%), Gaps = 20/207 (9%)
Query: 170 NYTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISEVTATSVRLDWTYPSETLL 229
+ G S+ + +P D+ + W LL
Sbjct: 106 HTLLPWQCTNGSEVQSSWAETTYWISPQGIPETXVQDMDCVYYNWQYLLCSWKPGIGVLL 165
Query: 230 Y--YVIQYKPKAANT-----PYSEISGIITTYY-TVRNLSPYTEYEFYIIAVNNLGRGPP 281
Y + Y + + Y + G S Y ++ + +
Sbjct: 166 DTNYNLFYWYEGLDHALQCVDYIKADGQNIGCRFPYLEASDYKDFYICVNGSSENK-PIR 224
Query: 282 SSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQIT-----------AKHH 330
SS P + SS + ++W P P
Sbjct: 225 SSYFTFQLQNIVKPLPPVYLTFTRESSCEIKLKWSIPLGPIPARCFDYEIEIREDDTTLV 284
Query: 331 RRIGLVETYSLTGLYPNTLYYIWLAAQ 357
ETY+L + ++
Sbjct: 285 TATVENETYTLKTTNETRQLCFVVRSK 311
Score = 48.3 bits (114), Expect = 8e-06
Identities = 34/231 (14%), Positives = 58/231 (25%), Gaps = 31/231 (13%)
Query: 702 ATTPPIPVRTKQYVPGAPPQNVSCEPLSSTS-IRISWEPPPVERSNGHI-VYYKLQFVET 759
+TT + + PPQ+ + + W+PP V Y+L++
Sbjct: 17 STTFGCTSSSDTEIKVNPPQDFEIVDPGYLGYLYLQWQPPLSLDHFKECTVEYELKYRNI 76
Query: 760 GRSDSEASIVTLKNQTSFVLDELKKWTEYRIWVLA---------GTSIGDGPSSYPITIR 810
G + + KN +L K E I L S + +
Sbjct: 77 GSETWK--TIITKNLHYKDGFDLNKGIEAXIHTLLPWQCTNGSEVQSSWAETTYWISPQG 134
Query: 811 THEDDPSEV-C-------------PTQNDFRKNKKTNGSNFKGGYLNDPMRFDVSDGGAL 856
E ++ C P ++G + G
Sbjct: 135 IPETXVQDMDCVYYNWQYLLCSWKPGIGVLLDTNYNLFYWYEGLDHALQCVDYIKADGQN 194
Query: 857 E---LNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKTPGGVPNRPHVNL 904
+ I V + + RS T + V P V L
Sbjct: 195 IGCRFPYLEASDYKDFYICVNG-SSENKPIRSSYFTFQLQNIVKPLPPVYL 244
Score = 45.6 bits (107), Expect = 6e-05
Identities = 40/317 (12%), Positives = 86/317 (27%), Gaps = 59/317 (18%)
Query: 37 PRDVQVR-PLSSSTMVIQWDEPETPNG----------QITHPPTRAARSHA----RLAAQ 81
P+D ++ P + +QW P + + + + + ++
Sbjct: 35 PQDFEIVDPGYLGYLYLQWQPPLSLDHFKECTVEYELKYRNIGSETWKTIITKNLHYKDG 94
Query: 82 SVLRRGRLAHAVRQVADPVRRVPPQFSIPPPALLEVML-----DSPLNLSCVA------- 129
L +G A + S + ++ CV
Sbjct: 95 FDLNKGIEAXIHTLLPWQCTNGSEVQSSWAETTYWISPQGIPETXVQDMDCVYYNWQYLL 154
Query: 130 ----VGSPMP-------FVKWRKGQNIELTPDDKLPVGRNVLTLDRVTESENYTCI---- 174
G + F + + D G+N+ E+ +Y
Sbjct: 155 CSWKPGIGVLLDTNYNLFYWYEGLDHALQCVDYIKADGQNIGCRFPYLEASDYKDFYICV 214
Query: 175 -AASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISEVTATSVRLDWTYPSETL----L 229
+S I +S L P+ + + ++ ++L W+ P +
Sbjct: 215 NGSSENKPIRSSYFTFQLQNIVKPL----PPVYLTFTRESSCEIKLKWSIPLGPIPARCF 270
Query: 230 YYVIQYKPKAANTPYSEISGIITTYYTVRNLSPYTEYEFYIIAVNNL---GRGPPS--SP 284
Y I+ + +T + TY T++ + + F + + N+ G S S
Sbjct: 271 DYEIEIRED--DTTLVTATVENETY-TLKTTNETRQLCFVVRSKVNIYCSDDGIWSEWSD 327
Query: 285 AVITTGETEPGTAPRDV 301
GE
Sbjct: 328 KQCWEGEDLSKKTLLRF 344
>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 118
Score = 93.6 bits (233), Expect = 7e-23
Identities = 24/120 (20%), Positives = 42/120 (35%), Gaps = 4/120 (3%)
Query: 464 GEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQ 523
G ++ R P P + L +++ + W EP + GY V Y
Sbjct: 1 GSSGSSGSHDSRLTAGVPD-TPTRLVFSALGPTSLRVSWQEPR-CERPLQGYSVEYQLLN 58
Query: 524 SLPMSAWETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVGPG-PLSAPVLVKTQQGVPSQ 582
+ + + DL P+ Y RV+A + G G + +++Q PS
Sbjct: 59 GGELHRLNIPNPAQTSVV-VEDLLPNHSYVFRVRAQSQEGWGREREGVITIESQVSGPSS 117
Score = 90.9 bits (226), Expect = 5e-22
Identities = 29/120 (24%), Positives = 46/120 (38%), Gaps = 5/120 (4%)
Query: 699 GEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVE 758
G ++ R VP P + L TS+R+SW+ P R + Y +++
Sbjct: 1 GSSGSSGSHDSRLTAGVPD-TPTRLVFSALGPTSLRVSWQEP---RCERPLQGYSVEYQL 56
Query: 759 TGRSDSEASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDG-PSSYPITIRTHEDDPS 817
+ + QTS V+++L Y V A + G G ITI + PS
Sbjct: 57 LNGGELHRLNIPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGREREGVITIESQVSGPS 116
Score = 82.8 bits (205), Expect = 5e-19
Identities = 21/99 (21%), Positives = 35/99 (35%), Gaps = 3/99 (3%)
Query: 199 TLPVAPLDVKISEVTATSVRLDWTYPSE--TLLYYVIQYKPKAANTPYS-EISGIITTYY 255
+P P + S + TS+R+ W P L Y ++Y+ + I T
Sbjct: 16 GVPDTPTRLVFSALGPTSLRVSWQEPRCERPLQGYSVEYQLLNGGELHRLNIPNPAQTSV 75
Query: 256 TVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEP 294
V +L P Y F + A + G G + +
Sbjct: 76 VVEDLLPNHSYVFRVRAQSQEGWGREREGVITIESQVSG 114
Score = 74.4 bits (183), Expect = 3e-16
Identities = 26/159 (16%), Positives = 43/159 (27%), Gaps = 42/159 (26%)
Query: 563 GPGPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYA 622
G S + GVP P L + T++ ++W +P + Y + +
Sbjct: 1 GSSGSSGSHDSRLTAGVPDTPTRLVFSALGPTSLRVSWQEPRCERP-LQGYSVEYQLLNG 59
Query: 623 KPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVETYSLTGL 682
+L ++I A T + + L
Sbjct: 60 G--ELHRLNIPNPAQT-------------------------------------SVVVEDL 80
Query: 683 YPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQ 721
PN Y + AQS G G + Q P
Sbjct: 81 LPNHSYVFRVRAQSQEGWGREREGVITIESQ--VSGPSS 117
Score = 62.0 bits (151), Expect = 7e-12
Identities = 18/113 (15%), Positives = 30/113 (26%), Gaps = 16/113 (14%)
Query: 277 GRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQIT---------- 326
G S P P + L +++ + W EP +
Sbjct: 1 GSSGSSGSHDSRLTAGVPD-TPTRLVFSALGPTSLRVSWQEPR-CERPLQGYSVEYQLLN 58
Query: 327 ----AKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQ 375
+ + + + L PN Y + AQS G G + Q
Sbjct: 59 GGELHRLNIPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGREREGVITIESQ 111
Score = 47.8 bits (114), Expect = 7e-07
Identities = 21/119 (17%), Positives = 36/119 (30%), Gaps = 21/119 (17%)
Query: 799 GDGPSSYPITIRTHEDDPSEVCPTQNDFRKNKKT-----------NGS------NFKGGY 841
G SS R P PT+ F T ++
Sbjct: 1 GSSGSSGSHDSRLTAGVPDT--PTRLVFSALGPTSLRVSWQEPRCERPLQGYSVEYQLLN 58
Query: 842 LNDPMRFDVSDGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKTPGGVPNRP 900
+ R ++ + + V L P+ Y +V A +++G G E + T + P
Sbjct: 59 GGELHRLNIPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGRER--EGVITIESQVSGP 115
Score = 31.2 bits (71), Expect = 0.44
Identities = 5/30 (16%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 36 APRDVQVRPLSSSTMVIQWDEPETPNGQIT 65
P + L +++ + W EP +
Sbjct: 20 TPTRLVFSALGPTSLRVSWQEPR-CERPLQ 48
Score = 28.9 bits (65), Expect = 2.8
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 447 LYPNTLYYIWLAAQSPRGEG-ATTPPIPVRTKQYEPGTA 484
L PN Y + AQS G G I + ++ P +
Sbjct: 80 LLPNHSYVFRVRAQSQEGWGREREGVITIESQVSGPSSG 118
>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R,
cytokine, glycoprotein, IM response, membrane,
phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens}
PDB: 3bpn_C*
Length = 314
Score = 98.4 bits (244), Expect = 1e-22
Identities = 38/352 (10%), Positives = 102/352 (28%), Gaps = 67/352 (19%)
Query: 485 PRDVQVRPLSSSTMVIQWDEPETPNGQIT-GYKVYYTQDQSLPMSAWETQVVDNNQLTTI 543
++ V + T++ W+ PE + + Y ++ + ++ + +
Sbjct: 7 VTNLSVSVENLCTVIWTWNPPEGASSNCSLWYFSHFGDK-------QDKKIAPETRRSIE 59
Query: 544 SDLTPHTIYTIRVQAFTSVG--PGPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLAWS 601
L + Q T+ P L + + S +L+ + + + +W
Sbjct: 60 VPLNERICLQVGSQCSTNESEKPSILVEKCISPPEGDPESAVTELQCIWHNLSYMKCSWL 119
Query: 602 KPTHSGENIISYELYWNDTYAKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDT 661
++ + YW+ S E I E +
Sbjct: 120 PGRNTSPDTNYTLYYWHR---------------------------SLEKIHQCENIF--- 149
Query: 662 YAKAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQ 721
+ + G + + + + + G+ + I V V PP
Sbjct: 150 ----REGQYFGCSFDLTKVKDSSFEQHSVQIMVKDNAGKIKPSFNI-VPLTSRVKPDPPH 204
Query: 722 NVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQF------------VETGRSDSEASIV 769
+ + + + WE P ++Y+++ V+ + ++
Sbjct: 205 IKNLSF-HNDDLYVQWENPQ--NFISRCLFYEVEVNNSQTETHNVFYVQEAKCENPEFER 261
Query: 770 TLKNQTSFVLDELKKWTEYRIWVLAGTSIGDGPS-------SYPITIRTHED 814
++N + F++ + T + + T+ S ++I +
Sbjct: 262 NVENTSCFMVPGVLPDTLNTVRIRVKTNKLCYEDDKLWSNWSQEMSIGKKRN 313
Score = 76.1 bits (186), Expect = 6e-15
Identities = 35/291 (12%), Positives = 80/291 (27%), Gaps = 34/291 (11%)
Query: 624 PRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVETYSLTGLY 683
+L V W+ P + N L++ + + + L
Sbjct: 7 VTNLSVSVENLCTVIWTWNPPEGASSN---CSLWYFSHFGDKQDKKIAPETRRSIEVPLN 63
Query: 684 PNTLYYIWLAAQSPRGEGATTPPIPVRTK-QYVPGAPPQNVSCEPLSSTSIRISWEPPPV 742
+ + E + + + P + + C + + ++ SW P
Sbjct: 64 ERICLQVGSQCSTNESEKPSILVEKCISPPEGDPESAVTELQCIWHNLSYMKCSWLPGRN 123
Query: 743 E-RSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFVLDEL--KKWTEYRIWVLAGTSIG 799
+ +YY + +E SF L ++ + ++ + ++ + G
Sbjct: 124 TSPDTNYTLYYWHRSLEKIHQCENIFREGQYFGCSFDLTKVKDSSFEQHSVQIMVKDNAG 183
Query: 800 DGPSSYPITIRTHEDDPS------------------EVCPTQNDFR---------KNKKT 832
S+ I T P E +T
Sbjct: 184 KIKPSFNIVPLTSRVKPDPPHIKNLSFHNDDLYVQWENPQNFISRCLFYEVEVNNSQTET 243
Query: 833 NGSNFKGGYLNDPMRFDVSDGGALELNVTGLQPDTIYTIQVAALTRKGDGD 883
+ + + F+ + V G+ PDT+ T+++ T K +
Sbjct: 244 HNVFYVQEAKCENPEFERNVENTSCFMVPGVLPDTLNTVRIRVKTNKLCYE 294
Score = 66.1 bits (160), Expect = 9e-12
Identities = 35/299 (11%), Positives = 86/299 (28%), Gaps = 39/299 (13%)
Query: 292 TEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITAKHHRRIGLVE---------TYSLT 342
TE ++ V + T++ W+ PE + + + G +
Sbjct: 1 TETQPPVTNLSVSVENLCTVIWTWNPPEGASSNCSLWYFSHFGDKQDKKIAPETRRSIEV 60
Query: 343 GLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYGKTPGFGEQAAKHHRRIGLVETYSLT 402
L + + E + + G E A + ++L+
Sbjct: 61 PLNERICLQVGSQCSTNESEKPSILVEKCISP----PEGDPESAVTELQ----CIWHNLS 112
Query: 403 GLY---------PNTLYYIWLAAQSPRGEGATTPPIPVRTKQYGKTPGFGEQALYPNTLY 453
+ Y + I + +G + + +
Sbjct: 113 YMKCSWLPGRNTSPDTNYTLYYWHRSLEKIHQCENIFREGQYFGCSFDLTKVKDSSFEQH 172
Query: 454 YIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQIT 513
+ + + G+ + I T + +P P + + + +QW+ P+ +
Sbjct: 173 SVQIMVKDNAGKIKPSFNIVPLTSRVKPD-PPHIKNLSF-HNDDLYVQWENPQNFISRCL 230
Query: 514 GYKVYYTQDQS-----------LPMSAWETQVVDNNQLTTISDLTPHTIYTIRVQAFTS 561
Y+V Q+ + + V+N + + P T+ T+R++ T+
Sbjct: 231 FYEVEVNNSQTETHNVFYVQEAKCENPEFERNVENTSCFMVPGVLPDTLNTVRIRVKTN 289
Score = 61.5 bits (148), Expect = 3e-10
Identities = 33/258 (12%), Positives = 76/258 (29%), Gaps = 35/258 (13%)
Query: 444 EQALYPNTLYYIWLAAQSPRGEGATTPPIPVRTK-QYEPGTAPRDVQVRPLSSSTMVIQW 502
E L + + E + + + +P +A ++Q + S M W
Sbjct: 59 EVPLNERICLQVGSQCSTNESEKPSILVEKCISPPEGDPESAVTELQCIWHNLSYMKCSW 118
Query: 503 DEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLTTISDLTP-----HTIYTIRVQ 557
P T Y +YY + E + DLT +++++
Sbjct: 119 -LPGRNTSPDTNYTLYYWHRSLEKIHQCENIFREGQYFGCSFDLTKVKDSSFEQHSVQIM 177
Query: 558 AFTSVGPGPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYW 617
+ G S ++ T + P P + + + W P + + YE+
Sbjct: 178 VKDNAGKIKPSFNIVPLTSRVKPDPPHIKN-LSFHNDDLYVQWENPQNFISRCLFYEVEV 236
Query: 618 NDTYAKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVETY 677
N++ + ++ V + ++ +
Sbjct: 237 NNSQTETHNVFYVQEAKCENPEFERNVENT---------------------------SCF 269
Query: 678 SLTGLYPNTLYYIWLAAQ 695
+ G+ P+TL + + +
Sbjct: 270 MVPGVLPDTLNTVRIRVK 287
Score = 61.5 bits (148), Expect = 3e-10
Identities = 21/186 (11%), Positives = 47/186 (25%), Gaps = 21/186 (11%)
Query: 204 PLDVKISEVTATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEISGIITTYYTVRNLSPY 263
++ +S +V W P + Y + +I+ T L+
Sbjct: 7 VTNLSVSVENLCTVIWTWNPPEGASSNCSLWYFSHFGDKQDKKIA-PETRRSIEVPLNER 65
Query: 264 TEYEFYIIAVNNLGRGP-PSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEPETPN 322
+ N P I+ E +P +A ++Q + S M W +
Sbjct: 66 ICLQVGSQCSTNESEKPSILVEKCISPPEGDPESAVTELQCIWHNLSYMKCSWLPGRNTS 125
Query: 323 GQITA-------------------KHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEG 363
+ + G + + + + + G+
Sbjct: 126 PDTNYTLYYWHRSLEKIHQCENIFREGQYFGCSFDLTKVKDSSFEQHSVQIMVKDNAGKI 185
Query: 364 ATTPPI 369
+ I
Sbjct: 186 KPSFNI 191
Score = 52.6 bits (125), Expect = 2e-07
Identities = 19/102 (18%), Positives = 37/102 (36%), Gaps = 8/102 (7%)
Query: 718 APPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSF 777
P N+S + ++ +W PP SN + Y+ + D + + + + S
Sbjct: 5 PPVTNLSVSVENLCTVIWTWNPPEGASSNCSLWYF------SHFGDKQDKKIAPETRRSI 58
Query: 778 VLDELKKWTEYRIWVLAGTSIGDGPSSY-PITIRTHEDDPSE 818
+ L + ++ T+ + PS I E DP
Sbjct: 59 EVP-LNERICLQVGSQCSTNESEKPSILVEKCISPPEGDPES 99
Score = 48.0 bits (113), Expect = 7e-06
Identities = 33/284 (11%), Positives = 71/284 (25%), Gaps = 44/284 (15%)
Query: 31 TEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQIT--------HPPTRAARSHARLAAQS 82
TE ++ V + T++ W+ PE + + + R + +
Sbjct: 1 TETQPPVTNLSVSVENLCTVIWTWNPPEGASSNCSLWYFSHFGDKQDKKIAPETRRSIEV 60
Query: 83 VLRRGRLAHAVRQVADPVRRVPPQFSIPPPALLEVML-DSPLNLSCVAVGSPMPFVKWRK 141
L Q + P + E + L C+ W
Sbjct: 61 PLNERICLQVGSQCSTNESEKPSILVEKCISPPEGDPESAVTELQCIWHNLSYMKCSWLP 120
Query: 142 GQN-----------------IELTPDDKLPVGRNVLTLDRVT--ESENYTCIAASVLGVI 182
G+N ++ G+ +T + ++ + ++
Sbjct: 121 GRNTSPDTNYTLYYWHRSLEKIHQCENIFREGQYFGCSFDLTKVKDSSFEQHSVQIMVKD 180
Query: 183 ETSTIVKVQCKYAPLLTLPVAPLDVKISEVTATSVRLDWTYPSETL---LYYVIQYKPKA 239
I + P +K + + W P + L+Y ++
Sbjct: 181 NAGKIKPSFNIVPLTSRVKPDPPHIKNLSFHNDDLYVQWENPQNFISRCLFYEVEVNNSQ 240
Query: 240 AN-------------TPYSEISGIITTYYTVRNLSPYTEYEFYI 270
P E + T+ + V + P T I
Sbjct: 241 TETHNVFYVQEAKCENPEFERNVENTSCFMVPGVLPDTLNTVRI 284
>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 123
Score = 92.2 bits (229), Expect = 2e-22
Identities = 23/106 (21%), Positives = 42/106 (39%), Gaps = 7/106 (6%)
Query: 199 TLPVAPLDVKISEVTATSVRLDWTYPSET-------LLYYVIQYKPKAANTPYSEISGII 251
T + P+ V+ +T +VR+ W S + Y ++++ + + +
Sbjct: 17 TPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTSFSASAKYKSEDTT 76
Query: 252 TTYYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTA 297
+ YT L P T YEF ++ N S A TT E ++
Sbjct: 77 SLSYTATGLKPNTMYEFSVMVTKNRRSSTWSMTAHATTYEASGPSS 122
Score = 88.8 bits (220), Expect = 4e-21
Identities = 22/119 (18%), Positives = 42/119 (35%), Gaps = 4/119 (3%)
Query: 701 GATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERS--NGHIVYYKLQFVE 758
G++ P V P PP V L+ ++R+SW V ++ + Y +++
Sbjct: 4 GSSGFPTSVPDLS-TPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRT 62
Query: 759 TGRSDSEASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDPS 817
+ + ++ S+ LK T Y V+ + S T+E
Sbjct: 63 SFSASAKYKSED-TTSLSYTATGLKPNTMYEFSVMVTKNRRSSTWSMTAHATTYEASGP 120
Score = 87.6 bits (217), Expect = 1e-20
Identities = 24/118 (20%), Positives = 43/118 (36%), Gaps = 3/118 (2%)
Query: 466 GATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYT-QDQS 524
G++ P V P P VQ L+ + + W + P Q T YT + ++
Sbjct: 4 GSSGFPTSVPDLS-TPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRT 62
Query: 525 LPMSAWETQVVDNNQLT-TISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPS 581
++ + + D L+ T + L P+T+Y V + S T +
Sbjct: 63 SFSASAKYKSEDTTSLSYTATGLKPNTMYEFSVMVTKNRRSSTWSMTAHATTYEASGP 120
Score = 64.9 bits (158), Expect = 1e-12
Identities = 23/116 (19%), Positives = 35/116 (30%), Gaps = 17/116 (14%)
Query: 277 GRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQIT---------- 326
G S + P P VQ L+ + + W + P Q T
Sbjct: 1 GSSGSSGFPTSVPDLSTPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRW 60
Query: 327 -------AKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQ 375
AK+ +Y+ TGL PNT+Y + R + T +
Sbjct: 61 RTSFSASAKYKSEDTTSLSYTATGLKPNTMYEFSVMVTKNRRSSTWSMTAHATTYE 116
Score = 61.0 bits (148), Expect = 2e-11
Identities = 19/101 (18%), Positives = 39/101 (38%), Gaps = 5/101 (4%)
Query: 624 PRDLRAVDIQETAVTLAWSKPTHSGENIIS----YELYWNDTYAKAKHHRRIGLVET-YS 678
P ++AV + AV ++W+ + S Y + W +++ + ++ Y+
Sbjct: 22 PVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTSFSASAKYKSEDTTSLSYT 81
Query: 679 LTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAP 719
TGL PNT+Y + R + T + +
Sbjct: 82 ATGLKPNTMYEFSVMVTKNRRSSTWSMTAHATTYEASGPSS 122
Score = 44.1 bits (104), Expect = 2e-05
Identities = 11/51 (21%), Positives = 18/51 (35%)
Query: 847 RFDVSDGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKTPGGVP 897
++ D +L TGL+P+T+Y V + S T
Sbjct: 69 KYKSEDTTSLSYTATGLKPNTMYEFSVMVTKNRRSSTWSMTAHATTYEASG 119
Score = 36.8 bits (85), Expect = 0.006
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 30 VTEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQIT 65
++ P P VQ L+ + + W + P Q T
Sbjct: 15 LSTPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKT 50
Score = 35.2 bits (81), Expect = 0.024
Identities = 7/38 (18%), Positives = 13/38 (34%)
Query: 447 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTA 484
L PNT+Y + R + T + ++
Sbjct: 85 LKPNTMYEFSVMVTKNRRSSTWSMTAHATTYEASGPSS 122
>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 113
Score = 91.8 bits (228), Expect = 3e-22
Identities = 21/109 (19%), Positives = 37/109 (33%), Gaps = 3/109 (2%)
Query: 711 TKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERS--NGHIVYYKLQFVETGRSDSEASI 768
+ P PP V LS +IRI+W + + YY +++ ++++
Sbjct: 3 SGSSGPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKN 62
Query: 769 VTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDPS 817
S+++ LK T Y V+ S T E
Sbjct: 63 AN-ATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELSGP 110
Score = 89.5 bits (222), Expect = 2e-21
Identities = 22/110 (20%), Positives = 37/110 (33%), Gaps = 2/110 (1%)
Query: 476 TKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYT-QDQSLPMSAWETQV 534
+ P P VQ LS T+ I W + P Q YYT + ++ + + +
Sbjct: 3 SGSSGPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKN 62
Query: 535 VDNNQL-TTISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPSQP 583
+ L ++ L P+T+Y V S T +
Sbjct: 63 ANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELSGPSS 112
Score = 89.1 bits (221), Expect = 2e-21
Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 7/104 (6%)
Query: 201 PVAPLDVKISEVTATSVRLDWTYPSET-------LLYYVIQYKPKAANTPYSEISGIITT 253
+ P+ V+ S ++ ++R+ W S YY +++K + + T
Sbjct: 9 MMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTL 68
Query: 254 YYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTA 297
Y V L P T YEF ++ S A TT E ++
Sbjct: 69 SYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELSGPSS 112
Score = 65.6 bits (160), Expect = 4e-13
Identities = 24/105 (22%), Positives = 35/105 (33%), Gaps = 17/105 (16%)
Query: 288 TTGETEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQIT-----------------AKHH 330
++G + P P VQ LS T+ I W + P Q K+
Sbjct: 2 SSGSSGPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYK 61
Query: 331 RRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQ 375
+Y +TGL PNTLY + R + T +
Sbjct: 62 NANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFE 106
Score = 61.0 bits (148), Expect = 1e-11
Identities = 17/101 (16%), Positives = 33/101 (32%), Gaps = 5/101 (4%)
Query: 624 PRDLRAVDIQETAVTLAWSKPTHSGENIIS----YELYWNDTYAKAKHHRRIGLVET-YS 678
P ++A + + + W+ + I+ Y + W ++ Y
Sbjct: 12 PVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTLSYL 71
Query: 679 LTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAP 719
+TGL PNTLY + R + T + +
Sbjct: 72 VTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELSGPSS 112
Score = 47.5 bits (113), Expect = 8e-07
Identities = 11/51 (21%), Positives = 19/51 (37%)
Query: 847 RFDVSDGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKTPGGVP 897
++ ++ L VTGL+P+T+Y V + S T
Sbjct: 59 KYKNANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELSG 109
Score = 37.9 bits (88), Expect = 0.002
Identities = 11/37 (29%), Positives = 14/37 (37%)
Query: 31 TEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITHP 67
+ P P VQ LS T+ I W + P Q
Sbjct: 6 SGPMMPPVGVQASILSHDTIRITWADNSLPKHQKITD 42
Score = 34.4 bits (79), Expect = 0.036
Identities = 8/38 (21%), Positives = 13/38 (34%)
Query: 447 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTA 484
L PNTLY + R + T + ++
Sbjct: 75 LKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELSGPSS 112
>1x5x_A Fibronectin type-III domain containing protein 3A; structural
genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 109
Score = 91.6 bits (228), Expect = 3e-22
Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 199 TLPVAPLDVKISEVTATSVRLDWTYPSET----LLYYVIQYKPKAANTPYSEISGIITTY 254
+ P P +++ T + L W+ PS T + Y+++ + + + +
Sbjct: 6 SGPSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDLA 65
Query: 255 YTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGT 296
YTV+NL T+Y+F +IA N+ G+ PS TT +
Sbjct: 66 YTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCPDSGPS 107
Score = 57.7 bits (140), Expect = 2e-10
Identities = 20/110 (18%), Positives = 33/110 (30%), Gaps = 6/110 (5%)
Query: 476 TKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQ-ITGYKVYYTQDQSLPMSAWETQV 534
+ P P + + + +QW +P Y + ++ S
Sbjct: 3 SGSSGPS-MPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETS---GYGFKPK 58
Query: 535 VDNNQLT-TISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPSQP 583
D L T+ +L T Y +V A+ S G S V T
Sbjct: 59 YDGEDLAYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCPDSGPSS 108
Score = 52.3 bits (126), Expect = 2e-08
Identities = 18/106 (16%), Positives = 34/106 (32%), Gaps = 7/106 (6%)
Query: 711 TKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGH--IVYYKLQFVETGRSDSEASI 768
+ P P + T + + W P + Y L+ E
Sbjct: 3 SGSSGPS-MPASPVLTKAGITWLSLQWSKPS---GTPSDEGISYILEMEEETSGYGFKPK 58
Query: 769 VTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHED 814
+ ++ + L++ T+Y+ V+A S G S + T D
Sbjct: 59 YDGE-DLAYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCPD 103
Score = 45.8 bits (109), Expect = 3e-06
Identities = 18/98 (18%), Positives = 36/98 (36%), Gaps = 2/98 (2%)
Query: 624 PRDLRAVDIQETAVTLAWSKPTHSG-ENIISYELYWNDTYAKAKHHRRIGLVET-YSLTG 681
P T ++L WSKP+ + + ISY L + + + + Y++
Sbjct: 11 PASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDLAYTVKN 70
Query: 682 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAP 719
L +T Y + A + G+ + + T +
Sbjct: 71 LRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCPDSGPSS 108
Score = 35.4 bits (82), Expect = 0.012
Identities = 15/109 (13%), Positives = 34/109 (31%), Gaps = 16/109 (14%)
Query: 288 TTGETEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQ-ITA-------------KHHRRI 333
++G + P P + + + +QW +P + +
Sbjct: 2 SSGSSGPS-MPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYD 60
Query: 334 GLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPI-PVRTKQYGKTPG 381
G Y++ L +T Y + A + G+ + + G + G
Sbjct: 61 GEDLAYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCPDSGPSSG 109
Score = 31.2 bits (71), Expect = 0.37
Identities = 12/43 (27%), Positives = 17/43 (39%)
Query: 850 VSDGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKT 892
DG L V L+ T Y +V A +G + S+ T
Sbjct: 58 KYDGEDLAYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTT 100
>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY
docking, cell adhesion, structural protein; NMR {Homo
sapiens}
Length = 201
Score = 94.3 bits (234), Expect = 4e-22
Identities = 30/204 (14%), Positives = 64/204 (31%), Gaps = 23/204 (11%)
Query: 624 PRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRI--GLVETYSLTG 681
+ Q + + W+ P +I Y L W + + G + +Y++ G
Sbjct: 5 EVFITETPSQPNSHPIQWNAP--QPSHISKYILRWRPKNSVGRWKEATIPGHLNSYTIKG 62
Query: 682 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAP--------------PQNVSCEP 727
L P +Y L + G T T P + S
Sbjct: 63 LKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVATSESVTE 122
Query: 728 LSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFVLDELKKWTE 787
++++S +SW + +++++ + D + TS + +L +
Sbjct: 123 ITASSFVVSWVSAS-----DTVSGFRVEYELSEEGDEPQYLDLPSTATSVNIPDLLPGRK 177
Query: 788 YRIWVLAGTSIGDGPSSYPITIRT 811
Y + V + G+ + T
Sbjct: 178 YIVNVYQISEDGEQSLILSTSQTT 201
Score = 93.2 bits (231), Expect = 1e-21
Identities = 30/198 (15%), Positives = 64/198 (32%), Gaps = 27/198 (13%)
Query: 203 APLDVKISEVTATSVRLDWTYP-SETLLYYVIQYKPKAANTPYSEIS-GIITTYYTVRNL 260
+ + + S + W P + Y+++++PK + + E + YT++ L
Sbjct: 4 VEVFITETPSQPNSHPIQWNAPQPSHISKYILRWRPKNSVGRWKEATIPGHLNSYTIKGL 63
Query: 261 SPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTA--------------PRDVQVRPL 306
P YE +I++ G + TT + P T+ V +
Sbjct: 64 KPGVVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVATSESVTEI 123
Query: 307 SSSTMVIQWDEPETP-----------NGQITAKHHRRIGLVETYSLTGLYPNTLYYIWLA 355
++S+ V+ W ++ + ++ L P Y + +
Sbjct: 124 TASSFVVSWVSASDTVSGFRVEYELSEEGDEPQYLDLPSTATSVNIPDLLPGRKYIVNVY 183
Query: 356 AQSPRGEGATTPPIPVRT 373
S GE + T
Sbjct: 184 QISEDGEQSLILSTSQTT 201
Score = 83.2 bits (205), Expect = 3e-18
Identities = 32/233 (13%), Positives = 70/233 (30%), Gaps = 36/233 (15%)
Query: 483 TAPRDVQVR--PLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQL 540
+ P +V + P ++ IQW+ P+ I+ Y + + S+ W+ + +
Sbjct: 1 SGPVEVFITETPSQPNSHPIQWNAPQ--PSHISKYILRWRPKNSV--GRWKEATIPGHLN 56
Query: 541 T-TISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLA 599
+ TI L P +Y ++ + G ++ T P +
Sbjct: 57 SYTIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGET--------T 108
Query: 600 WSKPTHSGENIISYELYWNDTYAKPRDLRAVDIQETAVTLAWSKPTHSGEN-IISYELYW 658
P +I ++ ++W + + + YEL
Sbjct: 109 PFSPLV------------------ATSESVTEITASSFVVSWVSASDTVSGFRVEYELSE 150
Query: 659 NDTYAKAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRT 711
++ + ++ L P Y + + S GE + T
Sbjct: 151 EGDE--PQYLDLPSTATSVNIPDLLPGRKYIVNVYQISEDGEQSLILSTSQTT 201
Score = 79.7 bits (196), Expect = 5e-17
Identities = 26/202 (12%), Positives = 50/202 (24%), Gaps = 32/202 (15%)
Query: 719 PPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFV 778
++ P S I W P HI Y L++ + S+
Sbjct: 4 VEVFITETPSQPNSHPIQWNAP----QPSHISKYILRWRPKNSVGRWKEATIPGHLNSYT 59
Query: 779 LDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDPSEVCPTQNDFRKNKKTNGSNFK 838
+ LK Y +++ G + T P + ++
Sbjct: 60 IKGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVATSES 119
Query: 839 --------------------GGYL--------NDPMRFDVSDGGALELNVTGLQPDTIYT 870
G+ D ++ A +N+ L P Y
Sbjct: 120 VTEITASSFVVSWVSASDTVSGFRVEYELSEEGDEPQYLDLPSTATSVNIPDLLPGRKYI 179
Query: 871 IQVAALTRKGDGDRSKPETIKT 892
+ V ++ G+ + T
Sbjct: 180 VNVYQISEDGEQSLILSTSQTT 201
Score = 72.4 bits (177), Expect = 2e-14
Identities = 26/167 (15%), Positives = 57/167 (34%), Gaps = 14/167 (8%)
Query: 137 VKWRKGQNIELTPDDKLPVGRNVLTLDRVTESENYTC--IAASVLGVIETSTIVKVQCKY 194
++WR ++ + +P N T+ + Y I+ G E +
Sbjct: 35 LRWRPKNSVGRWKEATIPGHLNSYTIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTST 94
Query: 195 APLLTL-----------PVAPLDVKISEVTATSVRLDWTYPSETLLYYVIQYKPKAANTP 243
+ +T P+ ++E+TA+S + W S+T+ + ++Y+
Sbjct: 95 STPVTSNTVTGETTPFSPLVATSESVTEITASSFVVSWVSASDTVSGFRVEYELSEEGDE 154
Query: 244 YSEIS-GIITTYYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITT 289
+ T + +L P +Y + ++ G TT
Sbjct: 155 PQYLDLPSTATSVNIPDLLPGRKYIVNVYQISEDGEQSLILSTSQTT 201
Score = 69.3 bits (169), Expect = 2e-13
Identities = 25/144 (17%), Positives = 46/144 (31%), Gaps = 20/144 (13%)
Query: 447 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTA--------------PRDVQVRP 492
L P +Y L + G T T P T+ V
Sbjct: 63 LKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVATSESVTE 122
Query: 493 LSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLT-TISDLTPHTI 551
+++S+ V+ W + + ++G++V Y + + + + + I DL P
Sbjct: 123 ITASSFVVSW---VSASDTVSGFRVEYELSEEG--DEPQYLDLPSTATSVNIPDLLPGRK 177
Query: 552 YTIRVQAFTSVGPGPLSAPVLVKT 575
Y + V + G L T
Sbjct: 178 YIVNVYQISEDGEQSLILSTSQTT 201
Score = 45.4 bits (107), Expect = 2e-05
Identities = 33/201 (16%), Positives = 57/201 (28%), Gaps = 20/201 (9%)
Query: 296 TAPRDVQVR--PLSSSTMVIQWDEPET------------PNGQITAKHHRRIGLVETYSL 341
+ P +V + P ++ IQW+ P+ N K G + +Y++
Sbjct: 1 SGPVEVFITETPSQPNSHPIQWNAPQPSHISKYILRWRPKNSVGRWKEATIPGHLNSYTI 60
Query: 342 TGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYGKTPGFGEQAAKHHRRIGLVETYSL 401
GL P +Y L + G T T + + S+
Sbjct: 61 KGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVATSESV 120
Query: 402 TGLYPNTLYYIWLAAQSPRGEGATT--PPIPVRTKQYGKTPGFGEQA----LYPNTLYYI 455
T + ++ W++A QY P L P Y +
Sbjct: 121 TEITASSFVVSWVSASDTVSGFRVEYELSEEGDEPQYLDLPSTATSVNIPDLLPGRKYIV 180
Query: 456 WLAAQSPRGEGATTPPIPVRT 476
+ S GE + T
Sbjct: 181 NVYQISEDGEQSLILSTSQTT 201
Score = 36.6 bits (84), Expect = 0.017
Identities = 9/51 (17%), Positives = 21/51 (41%)
Query: 852 DGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKTPGGVPNRPHV 902
G + GL+P +Y Q+ ++ + G + ++ + T P +
Sbjct: 52 PGHLNSYTIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNT 102
>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM
related cell adhesion molecule, fibronectin type III
domain, structural genomics; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 127
Score = 90.1 bits (224), Expect = 1e-21
Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 10/111 (9%)
Query: 200 LPVAPLDVKISEVTATSVRLDWTYPSE---TLLYYVIQYKPKAANT----PYSEISGIIT 252
+P P D+++++ SV+L WT + + ++I+Y+ +E+SG T
Sbjct: 16 VPNPPFDLELTDQLDKSVQLSWTPGDDNNSPITKFIIEYEDAMHKPGLWHHQTEVSG--T 73
Query: 253 TYYTVRNLSPYTEYEFYIIAVNNLGRGPPSSP-AVITTGETEPGTAPRDVQ 302
NLSPY Y F ++AVN++G+ PS T +EP P
Sbjct: 74 QTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKASEPDKNPTSGP 124
Score = 67.4 bits (165), Expect = 1e-13
Identities = 25/119 (21%), Positives = 44/119 (36%), Gaps = 1/119 (0%)
Query: 466 GATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSL 525
G++ P Y+ P D+++ ++ + W + N IT + + Y
Sbjct: 1 GSSGSSGPTPAPVYDVPNPPFDLELTDQLDKSVQLSWTPGDDNNSPITKFIIEYEDAMHK 60
Query: 526 PMSAWETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVGPGPLSAPVL-VKTQQGVPSQP 583
P V Q T +L+P+ Y+ RV A S+G S T+ P +
Sbjct: 61 PGLWHHQTEVSGTQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKASEPDKN 119
Score = 58.5 bits (142), Expect = 2e-10
Identities = 22/124 (17%), Positives = 42/124 (33%), Gaps = 10/124 (8%)
Query: 699 GEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGH--IVYYKLQF 756
G ++ P P VP PP ++ S+++SW P + + I + +++
Sbjct: 1 GSSGSSGPTPA-PVYDVPN-PPFDLELTDQLDKSVQLSWTPG----DDNNSPITKFIIEY 54
Query: 757 VETGRSDSE-ASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPI-TIRTHED 814
+ + + L + Y V+A SIG S T
Sbjct: 55 EDAMHKPGLWHHQTEVSGTQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKAS 114
Query: 815 DPSE 818
+P +
Sbjct: 115 EPDK 118
Score = 54.7 bits (132), Expect = 4e-09
Identities = 21/105 (20%), Positives = 36/105 (34%), Gaps = 4/105 (3%)
Query: 624 PRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLV---ETYSLT 680
P DL D + +V L+W+ + I + + + D K V +T +
Sbjct: 20 PFDLELTDQLDKSVQLSWTPGDDNNSPITKFIIEYEDAMHKPGLWHHQTEVSGTQTTAQL 79
Query: 681 GLYPNTLYYIWLAAQSPRGEGATTPPI-PVRTKQYVPGAPPQNVS 724
L P Y + A + G+ + TK P P +
Sbjct: 80 NLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKASEPDKNPTSGP 124
Score = 34.7 bits (80), Expect = 0.036
Identities = 19/115 (16%), Positives = 34/115 (29%), Gaps = 18/115 (15%)
Query: 277 GRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITA--------- 327
G S P + P P D+++ ++ + W + N IT
Sbjct: 1 GSSGSSGPTPAPVYD-VPN-PPFDLELTDQLDKSVQLSWTPGDDNNSPITKFIIEYEDAM 58
Query: 328 ------KHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPI-PVRTKQ 375
H + +T + L P Y + A + G+ + TK
Sbjct: 59 HKPGLWHHQTEVSGTQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKA 113
Score = 32.3 bits (74), Expect = 0.23
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 860 VTGLQPDTIYTIQVAALTRKGDGDRSKP-ETIKTPGGVPNRP 900
L P Y+ +V A+ G S+ E T P++
Sbjct: 78 QLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKASEPDKN 119
>1x3d_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 118
Score = 89.0 bits (221), Expect = 3e-21
Identities = 24/121 (19%), Positives = 45/121 (37%), Gaps = 11/121 (9%)
Query: 180 GVIETSTIVKVQCKYAPLLTLPVAPLDVKISEVTATSVRLDWTYPSE---TLLYYVIQYK 236
G + C+ P P +I+ T S+ L W PS+ + +V+++
Sbjct: 4 GSSGAEIFTTLSCE-------PDIPNPPRIANRTKNSLTLQWKAPSDNGSKIQNFVLEWD 56
Query: 237 PKAANTPYSEISGIITTYYTVRNLSPYTEYEFYIIAVNNLGRGPPSSP-AVITTGETEPG 295
N + + + + LSP +F + A N+ G S T+G + P
Sbjct: 57 EGKGNGEFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTSGCSGPS 116
Query: 296 T 296
+
Sbjct: 117 S 117
Score = 66.7 bits (163), Expect = 2e-13
Identities = 21/118 (17%), Positives = 41/118 (34%), Gaps = 5/118 (4%)
Query: 464 GEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQ 523
G ++ T EP P ++ + +++ +QW P +I + + + + +
Sbjct: 1 GSSGSSGAEIFTTLSCEPD-IPNPPRIANRTKNSLTLQWKAPSDNGSKIQNFVLEWDEGK 59
Query: 524 SLPMSAWETQVVDNNQLT-TISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVP 580
+ Q +Q I+ L+P R+ A G S VL T
Sbjct: 60 G---NGEFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTSGCSG 114
Score = 60.1 bits (146), Expect = 4e-11
Identities = 18/118 (15%), Positives = 38/118 (32%), Gaps = 4/118 (3%)
Query: 699 GEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVE 758
G ++ T P P + S+ + W+ P + I + L++ +
Sbjct: 1 GSSGSSGAEIFTTLSCEPD-IPNPPRIANRTKNSLTLQWKAP--SDNGSKIQNFVLEW-D 56
Query: 759 TGRSDSEASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDP 816
G+ + E + +Q F + +L + + A G S + T
Sbjct: 57 EGKGNGEFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTSGCSG 114
Score = 51.2 bits (123), Expect = 4e-08
Identities = 22/158 (13%), Positives = 43/158 (27%), Gaps = 43/158 (27%)
Query: 563 GPGPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYA 622
G S + T P P R + + ++TL W P+ +G I ++ L W++
Sbjct: 1 GSSGSSGAEIFTTLSCEPDIPNPPRIANRTKNSLTLQWKAPSDNGSKIQNFVLEWDEGKG 60
Query: 623 KPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVETYSLTGL 682
+ + + +T L
Sbjct: 61 NGEFCQCYMGSQK----------------------------------------QFKITKL 80
Query: 683 YPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPP 720
P L+A++ G + + T + P
Sbjct: 81 SPAMGCKFRLSARNDYGTSGFSEEVLYYT---SGCSGP 115
Score = 44.7 bits (106), Expect = 9e-06
Identities = 19/110 (17%), Positives = 37/110 (33%), Gaps = 14/110 (12%)
Query: 277 GRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITA--------- 327
G S + TT EP P ++ + +++ +QW P +I
Sbjct: 1 GSSGSSGAEIFTTLSCEPD-IPNPPRIANRTKNSLTLQWKAPSDNGSKIQNFVLEWDEGK 59
Query: 328 ----KHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRT 373
+G + + +T L P L+A++ G + + T
Sbjct: 60 GNGEFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYT 109
Score = 35.1 bits (81), Expect = 0.019
Identities = 9/48 (18%), Positives = 15/48 (31%)
Query: 850 VSDGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKTPGGVP 897
G + +T L P +++A G S+ T G
Sbjct: 67 CYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTSGCSG 114
>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains
of fibronectin-III domains, FOU fibronectin-III domains
PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A*
3cxe_A* 1egj_A* 1c8p_A
Length = 419
Score = 95.8 bits (237), Expect = 5e-21
Identities = 51/361 (14%), Positives = 97/361 (26%), Gaps = 60/361 (16%)
Query: 471 PIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETP------NGQITGYKVYYTQDQS 524
+ V Q+ PRD+Q+ ++ W + ++V Y + Q
Sbjct: 98 RLTVTLTQHVQPPEPRDLQIST-DQDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQD 156
Query: 525 LPMSAWETQVVDNNQLT-TISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPSQP 583
+ + +Q T L P + Y RV+ + G P
Sbjct: 157 -SWEDAAILLSNTSQATLGPEHLMPSSTYVARVRTRLAPGSRLSGRP------------- 202
Query: 584 RDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKPRDLRAVDIQETAVTLAWSK 643
S + A+P++L ++ +W
Sbjct: 203 ----------------------SKWSPEVCWDSQPGDEAQPQNLECFFDGAAVLSCSWEV 240
Query: 644 PTHSGENIISYELYWNDTYAKAKHHRRIG-LVETYSLTGLYPNTLYYIWLAAQSPRGEG- 701
++ Y A + R +T ++ + P G
Sbjct: 241 RKEVASSVSFGLFYKPSPDAGSAVLLREEECSPVLREGLGSLHTRHHCQIPVPDPATHGQ 300
Query: 702 ------ATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQ 755
+++ + APP S + WE R +++Q
Sbjct: 301 YIVSVQPRRAEKHIKSSVNIQMAPPSLQV--TKDGDSYSLRWETMK-MRYEHIDHTFEIQ 357
Query: 756 FVETGRSDSEASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDGPS-----SYPITIR 810
+ + + ++ TL+N S L L+ T Y V TS S +
Sbjct: 358 YRKDTATWKDSKTETLQNAHSMALPALEPSTRYWARVRVRTSRTGYNGIWSEWSEARSWD 417
Query: 811 T 811
T
Sbjct: 418 T 418
Score = 68.1 bits (165), Expect = 4e-12
Identities = 48/398 (12%), Positives = 105/398 (26%), Gaps = 62/398 (15%)
Query: 227 TLLYYVIQYKPKAANTPYSEISGIIT-TYYTVRNLSPYTEYEFYIIAVNNLGRGPPSSP- 284
TL+ V + + + S+ + + +++ + P P
Sbjct: 36 TLIRRVNEDLLEPVSCDLSDDMPWSACPHPRCVPRRCVIPCQSFVVTDVDYFSFQPDRPL 95
Query: 285 ---AVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEPETP-------------------- 321
+T + PRD+Q+ ++ W
Sbjct: 96 GTRLTVTLTQHVQPPEPRDLQIST-DQDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRL 154
Query: 322 -NGQITAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYGKTP 380
+ A T L P++ Y + + G + P + +
Sbjct: 155 QDSWEDAAILLSNTSQATLGPEHLMPSSTYVARVRTRLAPGSRLSGRPSKWSPEVCWDSQ 214
Query: 381 GFGEQAAKHHRRIGLVETYS---------LTGLYPNTLYYIWLAAQSPRGEGATTPPIPV 431
E ++ + L+Y + V
Sbjct: 215 PGDEAQPQNLECFFDGAAVLSCSWEVRKEVASSVSFGLFYKP----------SPDAGSAV 264
Query: 432 RTKQYGKTPGFGEQALYPNTLYYIWLAAQSPRGEG-------ATTPPIPVRTKQYEPGTA 484
++ +P E +T ++ + P G +++ A
Sbjct: 265 LLREEECSPVLREGLGSLHTRHHCQIPVPDPATHGQYIVSVQPRRAEKHIKSSVNIQ-MA 323
Query: 485 PRDVQVRPLSSSTMVIQWDEPETPNGQIT-GYKVYYTQDQSLPMSAWETQVVDNNQLTTI 543
P +QV + ++W+ + I +++ Y +D + +T+ + N +
Sbjct: 324 PPSLQVTK-DGDSYSLRWETMKMRYEHIDHTFEIQYRKDTA-TWKDSKTETLQNAHSMAL 381
Query: 544 SDLTPHTIYTIRVQAFTSVGPGPL-----SAPVLVKTQ 576
L P T Y RV+ TS S T+
Sbjct: 382 PALEPSTRYWARVRVRTSRTGYNGIWSEWSEARSWDTE 419
Score = 65.8 bits (159), Expect = 2e-11
Identities = 62/460 (13%), Positives = 120/460 (26%), Gaps = 89/460 (19%)
Query: 480 EPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQ 539
E + ++ +S + +W + + + + ++ L D
Sbjct: 1 EETIPLQTLRCYNDYTSHITCRWADTQDAQR-LVNVTLIRRVNEDLLEPVSCDLSDDMPW 59
Query: 540 LTTISDLTPHTIYTIRVQAFTSVG--------PGPLSAPVLVKTQQGV-PSQPRDLRAVD 590
I Q+F PL + V Q V P +PRDL+ +
Sbjct: 60 SACPHPRCVPRRCVIPCQSFVVTDVDYFSFQPDRPLGTRLTVTLTQHVQPPEPRDLQ-IS 118
Query: 591 IQETAVTLAWSKPTHSGENIISYELYWNDTYAKPRDLRAVDIQETAVTLAWSKPTHSGEN 650
+ L WS L +
Sbjct: 119 TDQDHFLLTWSVA-----------------------------------LGSPQSHWLSPG 143
Query: 651 IISYELYW---NDTYAKAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPP- 706
+ +E+ + D++ A T L P++ Y + + G + P
Sbjct: 144 DLEFEVVYKRLQDSWEDAAILLSNTSQATLGPEHLMPSSTYVARVRTRLAPGSRLSGRPS 203
Query: 707 ----IPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRS 762
Q A PQN+ C + + SWE + V + L + + +
Sbjct: 204 KWSPEVCWDSQPGDEAQPQNLECFFDGAAVLSCSWEVR---KEVASSVSFGLFYKPSPDA 260
Query: 763 DSEASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDG-------PSSYPITIRTHEDD 815
S + + T + + G P I++ +
Sbjct: 261 GSAVLLREEECSPVLREGLGSLHTRHHCQIPVPDPATHGQYIVSVQPRRAEKHIKSSVNI 320
Query: 816 PSEVCPTQNDFRKNK-------KTNGSNFKGG-------YLNDPMRFDVSD----GGALE 857
P K+ +T ++ Y D + S A
Sbjct: 321 QMA--PPSLQVTKDGDSYSLRWETMKMRYEHIDHTFEIQYRKDTATWKDSKTETLQNAHS 378
Query: 858 LNVTGLQPDTIYTIQVAALTRKGDGDR-----SKPETIKT 892
+ + L+P T Y +V T + + S+ + T
Sbjct: 379 MALPALEPSTRYWARVRVRTSRTGYNGIWSEWSEARSWDT 418
Score = 43.4 bits (101), Expect = 2e-04
Identities = 27/175 (15%), Positives = 54/175 (30%), Gaps = 13/175 (7%)
Query: 131 GSPMPFVKWRKGQNIELTPDDKLPVGRNVLTLDRVTESENYTCIAASVLGVIETSTIVKV 190
S + ++ + + VL + + C IV V
Sbjct: 246 SSVSFGLFYKPSPDAGSAVLLREEECSPVLREGLGSLHTRHHCQIPVPDPATHGQYIVSV 305
Query: 191 QCKYA-----PLLTLPVAPLDVKISEVTATSVRLDWTYPSET----LLYYVIQYKPKAAN 241
Q + A + + +AP +++++ S L W + IQY+ A
Sbjct: 306 QPRRAEKHIKSSVNIQMAPPSLQVTK-DGDSYSLRWETMKMRYEHIDHTFEIQYRKDTAT 364
Query: 242 TPYSEISGIITTY-YTVRNLSPYTEYEFYIIAVNNLG--RGPPSSPAVITTGETE 293
S+ + + + L P T Y + + G S + + +TE
Sbjct: 365 WKDSKTETLQNAHSMALPALEPSTRYWARVRVRTSRTGYNGIWSEWSEARSWDTE 419
>3t04_D Monobody 7C12; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding, phosphoprotein;
2.10A {Homo sapiens}
Length = 103
Score = 86.7 bits (215), Expect = 1e-20
Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 3/100 (3%)
Query: 713 QYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLK 772
+ P + + TS++ISW+ S ++ YY++ + ETG
Sbjct: 4 GSSVSSVPTKLEVVDATPTSLKISWDAYY--SSWQNVKYYRITYGETGGDSPVQEFTVPG 61
Query: 773 NQTSFVLDELKKWTEYRIWVLAGTSIGDGP-SSYPITIRT 811
++ + LK +Y I V A + G + PI+I
Sbjct: 62 YYSTATISGLKPGVDYTITVYAYDTFFPGYEPNSPISINY 101
Score = 85.6 bits (212), Expect = 3e-20
Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 2/99 (2%)
Query: 478 QYEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDN 537
+ P ++V + +++ I WD + + Y++ Y + E V
Sbjct: 4 GSSVSSVPTKLEVVDATPTSLKISWDAYYSSWQNVKYYRITYGETGG-DSPVQEFTVPGY 62
Query: 538 NQLTTISDLTPHTIYTIRVQAFTSVGPGPL-SAPVLVKT 575
TIS L P YTI V A+ + PG ++P+ +
Sbjct: 63 YSTATISGLKPGVDYTITVYAYDTFFPGYEPNSPISINY 101
Score = 78.6 bits (194), Expect = 8e-18
Identities = 18/98 (18%), Positives = 39/98 (39%), Gaps = 4/98 (4%)
Query: 199 TLPVAPLDVKISEVTATSVRLDWTYPSET---LLYYVIQYKPKAANTPYSEIS-GIITTY 254
++ P +++ + T TS+++ W + + YY I Y ++P E + +
Sbjct: 6 SVSSVPTKLEVVDATPTSLKISWDAYYSSWQNVKYYRITYGETGGDSPVQEFTVPGYYST 65
Query: 255 YTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGET 292
T+ L P +Y + A + G + + T
Sbjct: 66 ATISGLKPGVDYTITVYAYDTFFPGYEPNSPISINYRT 103
Score = 58.6 bits (142), Expect = 9e-11
Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 3/94 (3%)
Query: 622 AKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAK--AKHHRRIGLVETYSL 679
+ P L VD T++ ++W S +N+ Y + + +T + G T ++
Sbjct: 9 SVPTKLEVVDATPTSLKISWDAYYSSWQNVKYYRITYGETGGDSPVQEFTVPGYYSTATI 68
Query: 680 TGLYPNTLYYIWLAAQSPRGEG-ATTPPIPVRTK 712
+GL P Y I + A G PI + +
Sbjct: 69 SGLKPGVDYTITVYAYDTFFPGYEPNSPISINYR 102
Score = 58.6 bits (142), Expect = 1e-10
Identities = 16/99 (16%), Positives = 33/99 (33%), Gaps = 15/99 (15%)
Query: 291 ETEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQIT--------------AKHHRRIGLV 336
+ + P ++V + +++ I WD + + + G
Sbjct: 4 GSSVSSVPTKLEVVDATPTSLKISWDAYYSSWQNVKYYRITYGETGGDSPVQEFTVPGYY 63
Query: 337 ETYSLTGLYPNTLYYIWLAAQSPRGEG-ATTPPIPVRTK 374
T +++GL P Y I + A G PI + +
Sbjct: 64 STATISGLKPGVDYTITVYAYDTFFPGYEPNSPISINYR 102
Score = 40.9 bits (96), Expect = 1e-04
Identities = 5/36 (13%), Positives = 16/36 (44%)
Query: 31 TEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITH 66
+ + P ++V + +++ I WD + + +
Sbjct: 5 SSVSSVPTKLEVVDATPTSLKISWDAYYSSWQNVKY 40
Score = 38.2 bits (89), Expect = 0.001
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 852 DGGALELNVTGLQPDTIYTIQVAALTRKGDGD-RSKPETIKT 892
G ++GL+P YTI V A G + P +I
Sbjct: 60 PGYYSTATISGLKPGVDYTITVYAYDTFFPGYEPNSPISINY 101
>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold,
fibronectin type III, structural genomics; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 117
Score = 85.9 bits (213), Expect = 3e-20
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 5/104 (4%)
Query: 199 TLPVAPLDVKISEVTATSVRLDWTYPSE---TLLYYVIQYKPKAANTPYSEISGII-TTY 254
LP P ++++VT SV L W + Y+I+ ++ + + ++ + TT
Sbjct: 14 DLPGPPSKPQVTDVTKNSVTLSWQPGTPGTLPASAYIIEAFSQSVSNSWQTVANHVKTTL 73
Query: 255 YTVRNLSPYTEYEFYIIAVNNLGRGPPSSP-AVITTGETEPGTA 297
YTVR L P T Y F + A+N G PS + T ++ P +
Sbjct: 74 YTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQDSGPSSG 117
Score = 57.8 bits (140), Expect = 2e-10
Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 8/106 (7%)
Query: 715 VPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGH--IVYYKLQFVETGRSDSEASIVTLK 772
+PG PP ++ S+ +SW+P + G Y ++ S+S ++
Sbjct: 15 LPG-PPSKPQVTDVTKNSVTLSWQPG----TPGTLPASAYIIEAFSQSVSNSWQTVANHV 69
Query: 773 NQTSFVLDELKKWTEYRIWVLAGTSIGDG-PSSYPITIRTHEDDPS 817
T + + L+ T Y V A G PS +RT + PS
Sbjct: 70 KTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQDSGPS 115
Score = 54.7 bits (132), Expect = 3e-09
Identities = 24/101 (23%), Positives = 41/101 (40%), Gaps = 6/101 (5%)
Query: 484 APRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLT-- 541
P QV ++ +++ + W + Y + + S +S V ++ + T
Sbjct: 18 PPSKPQVTDVTKNSVTLSWQPGTPGTLPASAYII---EAFSQSVSNSWQTVANHVKTTLY 74
Query: 542 TISDLTPHTIYTIRVQAFTSVGPGPLSAPV-LVKTQQGVPS 581
T+ L P+TIY V+A G S V+TQ PS
Sbjct: 75 TVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQDSGPS 115
Score = 42.7 bits (101), Expect = 4e-05
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 3/96 (3%)
Query: 624 PRDLRAVDIQETAVTLAWSKPTHSGENIISY--ELYWNDTYAKAKHHRRIGLVETYSLTG 681
P + D+ + +VTL+W T +Y E + + Y++ G
Sbjct: 19 PSKPQVTDVTKNSVTLSWQPGTPGTLPASAYIIEAFSQSVSNSWQTVANHVKTTLYTVRG 78
Query: 682 LYPNTLYYIWLAAQSPRGEGATTPP-IPVRTKQYVP 716
L PNT+Y + A +P+G +P PVRT+ P
Sbjct: 79 LRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQDSGP 114
Score = 35.8 bits (83), Expect = 0.011
Identities = 26/118 (22%), Positives = 43/118 (36%), Gaps = 16/118 (13%)
Query: 279 GPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITA----------- 327
G S PG P QV ++ +++ + W +A
Sbjct: 1 GSSGSSGKNYDLSDLPG-PPSKPQVTDVTKNSVTLSWQPGTPGTLPASAYIIEAFSQSVS 59
Query: 328 ---KHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPP-IPVRTKQYGKTPG 381
+ Y++ GL PNT+Y + A +P+G +P PVRT+ G + G
Sbjct: 60 NSWQTVANHVKTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQDSGPSSG 117
Score = 30.8 bits (70), Expect = 0.70
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 860 VTGLQPDTIYTIQVAALTRKGDGDRSKP-ETIKTPGGVP 897
V GL+P+TIY V A+ +G D S + ++T P
Sbjct: 76 VRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQDSGP 114
>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol,
hormone-growth complex; HET: CME EST; 2.95A {Homo
sapiens}
Length = 121
Score = 86.1 bits (213), Expect = 3e-20
Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 1/95 (1%)
Query: 199 TLPVAPLDVKISEVTATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEIS-GIITTYYTV 257
++ P +++ T TS+ + W P+ T+ YY I Y N+P E + + T+
Sbjct: 27 SVSDVPTKLEVVAATPTSLLISWDAPAVTVRYYRITYGETGGNSPVQEFTVPGSKSTATI 86
Query: 258 RNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGET 292
L P +Y + AV L S + T
Sbjct: 87 SGLKPGVDYTITVYAVTGLRLMLAGSKPISINYRT 121
Score = 71.5 bits (175), Expect = 5e-15
Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 6/104 (5%)
Query: 708 PVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEAS 767
Q P + + TS+ ISW+ P + YY++ + ETG +
Sbjct: 20 ENLYFQGSVSDVPTKLEVVAATPTSLLISWDAPA-----VTVRYYRITYGETGGNSPVQE 74
Query: 768 IVTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDG-PSSYPITIR 810
++++ + LK +Y I V A T + S PI+I
Sbjct: 75 FTVPGSKSTATISGLKPGVDYTITVYAVTGLRLMLAGSKPISIN 118
Score = 64.5 bits (157), Expect = 1e-12
Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 7/103 (6%)
Query: 473 PVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWET 532
Q P ++V + ++++I WD P + Y++ Y + S +
Sbjct: 20 ENLYFQGSVSDVPTKLEVVAATPTSLLISWDAP---AVTVRYYRITYGETGG--NSPVQE 74
Query: 533 QVVDNNQLT-TISDLTPHTIYTIRVQAFTSVGPG-PLSAPVLV 573
V ++ T TIS L P YTI V A T + S P+ +
Sbjct: 75 FTVPGSKSTATISGLKPGVDYTITVYAVTGLRLMLAGSKPISI 117
Score = 50.7 bits (121), Expect = 9e-08
Identities = 18/122 (14%), Positives = 39/122 (31%), Gaps = 17/122 (13%)
Query: 265 EYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEPETP--- 321
+ + + + + P ++V + ++++I WD P
Sbjct: 4 HHHHHSSDYKDDDDKGEN-----LYFQGSVSDVPTKLEVVAATPTSLLISWDAPAVTVRY 58
Query: 322 --------NGQITAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEG-ATTPPIPVR 372
G + G T +++GL P Y I + A + A + PI +
Sbjct: 59 YRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGLRLMLAGSKPISIN 118
Query: 373 TK 374
+
Sbjct: 119 YR 120
Score = 46.8 bits (111), Expect = 2e-06
Identities = 19/92 (20%), Positives = 36/92 (39%), Gaps = 6/92 (6%)
Query: 624 PRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRI--GLVETYSLTG 681
P L V T++ ++W P + Y + + +T + G T +++G
Sbjct: 32 PTKLEVVAATPTSLLISWDAPAV---TVRYYRITYGETGGNSPVQEFTVPGSKSTATISG 88
Query: 682 LYPNTLYYIWLAAQSPRGEG-ATTPPIPVRTK 712
L P Y I + A + A + PI + +
Sbjct: 89 LKPGVDYTITVYAVTGLRLMLAGSKPISINYR 120
Score = 34.5 bits (79), Expect = 0.036
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 843 NDPMRFDVSDGGALELNVTGLQPDTIYTIQVAALTRKGDGDR-SKPETI 890
N P++ G ++GL+P YTI V A+T SKP +I
Sbjct: 69 NSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGLRLMLAGSKPISI 117
Score = 27.9 bits (62), Expect = 7.5
Identities = 6/36 (16%), Positives = 13/36 (36%)
Query: 25 PGYILVTEPGTAPRDVQVRPLSSSTMVIQWDEPETP 60
P ++V + ++++I WD P
Sbjct: 20 ENLYFQGSVSDVPTKLEVVAATPTSLLISWDAPAVT 55
>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative
splicing, cell adhesion, coiled coil, EGF-like domain,
extracellular matrix; 2.40A {Homo sapiens}
Length = 100
Score = 85.5 bits (212), Expect = 3e-20
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Query: 203 APLDVKISEVTATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEISGIIT-TYYTVRNLS 261
P ++K++ +T T+ + W P + ++ + K + + + + T T+ NL
Sbjct: 4 PPFNIKVTNITLTTAVVTWQPPILPIEGILVTFGRKNDPSDETTVDLTSSITSLTLTNLE 63
Query: 262 PYTEYEFYIIAVNNLGRGPPSSPAVITTG 290
P T YE I+A N PP S T
Sbjct: 64 PNTTYEIRIVARNGQQYSPPVSTTFTTGS 92
Score = 67.4 bits (165), Expect = 6e-14
Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 6/93 (6%)
Query: 719 PPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFV 778
PP N+ ++ T+ ++W+PP + I + F E ++ + TS
Sbjct: 4 PPFNIKVTNITLTTAVVTWQPPILP-----IEGILVTFGRKNDPSDETTVDLTSSITSLT 58
Query: 779 LDELKKWTEYRIWVLAGTSIGDGPSSYPITIRT 811
L L+ T Y I ++A P T T
Sbjct: 59 LTNLEPNTTYEIRIVARNGQQYSPPVST-TFTT 90
Score = 64.3 bits (157), Expect = 8e-13
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Query: 484 APRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLTTI 543
P +++V ++ +T V+ W P P I G V + + LT +
Sbjct: 4 PPFNIKVTNITLTTAVVTWQPPILP---IEGILVTFGRKNDPSDETTVDLTSSITSLT-L 59
Query: 544 SDLTPHTIYTIRVQAFTSVGPGP 566
++L P+T Y IR+ A P
Sbjct: 60 TNLEPNTTYEIRIVARNGQQYSP 82
Score = 50.5 bits (121), Expect = 7e-08
Identities = 17/99 (17%), Positives = 34/99 (34%), Gaps = 11/99 (11%)
Query: 624 PRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRI--GLVETYSLTG 681
P +++ +I T + W P I + + + + + +LT
Sbjct: 5 PFNIKVTNITLTTAVVTWQPPI---LPIEGILVTFGRKNDPSDETTVDLTSSITSLTLTN 61
Query: 682 LYPNTLYYIWLAAQSPRGEG------ATTPPIPVRTKQY 714
L PNT Y I + A++ + TT + +
Sbjct: 62 LEPNTTYEIRIVARNGQQYSPPVSTTFTTGSLEHHHHHH 100
Score = 46.6 bits (111), Expect = 1e-06
Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 17/97 (17%)
Query: 297 APRDVQVRPLSSSTMVIQWDEPETP-----------NGQITAKHHRRIGLVETYSLTGLY 345
P +++V ++ +T V+ W P P N + + +LT L
Sbjct: 4 PPFNIKVTNITLTTAVVTWQPPILPIEGILVTFGRKNDPSDETTVDLTSSITSLTLTNLE 63
Query: 346 PNTLYYIWLAAQSPRGEG------ATTPPIPVRTKQY 376
PNT Y I + A++ + TT + +
Sbjct: 64 PNTTYEIRIVARNGQQYSPPVSTTFTTGSLEHHHHHH 100
Score = 39.7 bits (93), Expect = 4e-04
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 852 DGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKTPGGVPNRPH 901
L +T L+P+T Y I++ A + T T G + + H
Sbjct: 51 TSSITSLTLTNLEPNTTYEIRIVARNGQQYSPPV--STTFTTGSLEHHHH 98
Score = 28.5 bits (64), Expect = 3.4
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 36 APRDVQVRPLSSSTMVIQWDEPETP 60
P +++V ++ +T V+ W P P
Sbjct: 4 PPFNIKVTNITLTTAVVTWQPPILP 28
>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 124
Score = 86.2 bits (214), Expect = 3e-20
Identities = 26/128 (20%), Positives = 50/128 (39%), Gaps = 14/128 (10%)
Query: 180 GVIETSTIVKVQCKYAPLLTLPVAPLDVKISEVTATSVRLDWTYPSE---TLLYYVIQYK 236
G +S + P P ++ IS + SV L + + ++ ++++ +
Sbjct: 1 GSSGSSGTISSGVPPEL----PGPPTNLGISNIGPRSVTLQFRPGYDGKTSISRWLVEAQ 56
Query: 237 PKAAN-----TPYSEISGII-TTYYTVRNLSPYTEYEFYIIAVNNLGRGPPSSP-AVITT 289
++S V +L+P+T Y F + VN +G PPS P I T
Sbjct: 57 VGVVGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQT 116
Query: 290 GETEPGTA 297
++ P +
Sbjct: 117 LQSGPSSG 124
Score = 74.7 bits (184), Expect = 3e-16
Identities = 24/123 (19%), Positives = 45/123 (36%), Gaps = 6/123 (4%)
Query: 464 GEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQ 523
G ++ I PG P ++ + + ++ +Q+ I+ + V
Sbjct: 1 GSSGSSGTISSGVPPELPG-PPTNLGISNIGPRSVTLQFRPGYDGKTSISRWLVEAQVGV 59
Query: 524 SLPMSAW----ETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVGPGPLSAPV-LVKTQQG 578
W + + + + DL P T Y+ R++ VG P S P ++T Q
Sbjct: 60 VGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQTLQS 119
Query: 579 VPS 581
PS
Sbjct: 120 GPS 122
Score = 65.1 bits (159), Expect = 9e-13
Identities = 24/127 (18%), Positives = 46/127 (36%), Gaps = 13/127 (10%)
Query: 699 GEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGH--IVYYKLQF 756
G ++ I +PG PP N+ + S+ + + P +G I + ++
Sbjct: 1 GSSGSSGTISSGVPPELPG-PPTNLGISNIGPRSVTLQFRPG----YDGKTSISRWLVEA 55
Query: 757 VETGRSDSE-----ASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYP-ITIR 810
+ E + + S + +L +T Y + +G P S P I+
Sbjct: 56 QVGVVGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQ 115
Query: 811 THEDDPS 817
T + PS
Sbjct: 116 TLQSGPS 122
Score = 48.5 bits (116), Expect = 5e-07
Identities = 19/160 (11%), Positives = 41/160 (25%), Gaps = 41/160 (25%)
Query: 563 GPGPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYA 622
G S + +P P +L +I +VTL + +I +
Sbjct: 1 GSSGSSGTISSGVPPELPGPPTNLGISNIGPRSVTLQFRPGYDGKTSISRW--------- 51
Query: 623 KPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYW---NDTYAKAKHHRRIGLVETYSL 679
++ ++ + + + +
Sbjct: 52 ----------------------------LVEAQVGVVGEGEEWLLIHQLSNEPDARSMEV 83
Query: 680 TGLYPNTLYYIWLAAQSPRGEGATTPP-IPVRTKQYVPGA 718
L P T Y + + G + P ++T Q P +
Sbjct: 84 PDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQTLQSGPSS 123
Score = 37.7 bits (88), Expect = 0.003
Identities = 15/119 (12%), Positives = 31/119 (26%), Gaps = 21/119 (17%)
Query: 277 GRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQIT---------- 326
G S PG P ++ + + ++ +Q+ I+
Sbjct: 1 GSSGSSGTISSGVPPELPG-PPTNLGISNIGPRSVTLQFRPGYDGKTSISRWLVEAQVGV 59
Query: 327 ---------AKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPP-IPVRTKQ 375
+ + L P T Y + + G + P ++T Q
Sbjct: 60 VGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQTLQ 118
Score = 35.0 bits (81), Expect = 0.023
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 852 DGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKP-ETIKTPGGVP 897
+ A + V L P T Y+ ++ + G S+P I+T P
Sbjct: 75 EPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQTLQSGP 121
>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design,
S de novo protein; HET: DIO; 1.00A {Synthetic}
Length = 98
Score = 84.4 bits (209), Expect = 6e-20
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Query: 203 APLDVKISEVTATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEIS-GIITTYYTVRNLS 261
AP D++++ VT TS+ + WT PS T+ Y I Y P E++ +T T+ L+
Sbjct: 4 APTDLQVTNVTDTSITVSWTPPSATITGYRITYTPSNGPGEPKELTVPPSSTSVTITGLT 63
Query: 262 PYTEYEFYIIAVNNLGRGPPSSPAVITTGETEP 294
P EY + A+ + PP T G
Sbjct: 64 PGVEYVVSVYALKDNQESPPLVGTQTTGGHHHH 96
Score = 64.0 bits (156), Expect = 1e-12
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 484 APRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLT-T 542
AP D+QV ++ +++ + W P + ITGY++ YT + V + + T
Sbjct: 4 APTDLQVTNVTDTSITVSWTPP---SATITGYRITYTPSNG--PGEPKELTVPPSSTSVT 58
Query: 543 ISDLTPHTIYTIRVQAFTSVGPGP 566
I+ LTP Y + V A P
Sbjct: 59 ITGLTPGVEYVVSVYALKDNQESP 82
Score = 62.1 bits (151), Expect = 4e-12
Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 6/93 (6%)
Query: 719 PPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFV 778
P ++ ++ TSI +SW PP + I Y++ + + + + TS
Sbjct: 4 APTDLQVTNVTDTSITVSWTPP-----SATITGYRITYTPSNGPGEPKELTVPPSSTSVT 58
Query: 779 LDELKKWTEYRIWVLAGTSIGDGPSSYPITIRT 811
+ L EY + V A + P T T
Sbjct: 59 ITGLTPGVEYVVSVYALKDNQESPPLV-GTQTT 90
Score = 45.1 bits (107), Expect = 4e-06
Identities = 16/80 (20%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 624 PRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRI--GLVETYSLTG 681
P DL+ ++ +T++T++W+ P+ I Y + + + + + ++TG
Sbjct: 5 PTDLQVTNVTDTSITVSWTPPS---ATITGYRITYTPSNGPGEPKELTVPPSSTSVTITG 61
Query: 682 LYPNTLYYIWLAAQSPRGEG 701
L P Y + + A E
Sbjct: 62 LTPGVEYVVSVYALKDNQES 81
Score = 39.7 bits (93), Expect = 3e-04
Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 11/78 (14%)
Query: 297 APRDVQVRPLSSSTMVIQWDEPETP-----------NGQITAKHHRRIGLVETYSLTGLY 345
AP D+QV ++ +++ + W P NG K + ++TGL
Sbjct: 4 APTDLQVTNVTDTSITVSWTPPSATITGYRITYTPSNGPGEPKELTVPPSSTSVTITGLT 63
Query: 346 PNTLYYIWLAAQSPRGEG 363
P Y + + A E
Sbjct: 64 PGVEYVVSVYALKDNQES 81
Score = 35.1 bits (81), Expect = 0.015
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Query: 852 DGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKTPGGVPNRPH 901
+ + +TGL P Y + V AL + T T G + H
Sbjct: 51 PPSSTSVTITGLTPGVEYVVSVYALKDNQESPPLV-GTQTTGG--HHHHH 97
Score = 28.2 bits (63), Expect = 3.4
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 398 TYSLTGLYPNTLYYIWLAAQSPRGEG 423
+ ++TGL P Y + + A E
Sbjct: 56 SVTITGLTPGVEYVVSVYALKDNQES 81
>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 108
Score = 84.4 bits (209), Expect = 9e-20
Identities = 16/98 (16%), Positives = 29/98 (29%)
Query: 201 PVAPLDVKISEVTATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEISGIITTYYTVRNL 260
P + S+V+ + R+ W + + Y + T + L
Sbjct: 8 LAPPRHLGFSDVSHDAARVFWEGAPRPVRLVRVTYVSSEGGHSGQTEAPGNATSAMLGPL 67
Query: 261 SPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAP 298
S T Y + + G + V T P + P
Sbjct: 68 SSSTTYTVRVTCLYPGGGSSTLTGRVTTKKAPSPSSGP 105
Score = 67.8 bits (166), Expect = 5e-14
Identities = 22/127 (17%), Positives = 38/127 (29%), Gaps = 23/127 (18%)
Query: 464 GEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQ 523
G ++ P PR + +S + W+ + +V Y +
Sbjct: 1 GSSGSSGLAP-----------PRHLGFSDVSHDAARVFWEGA---PRPVRLVRVTYVSSE 46
Query: 524 SLPMSAWETQVVDNNQLT-TISDLTPHTIYTIRVQAFTSVGPG-PLSAPVLVKTQQGVPS 581
N + + L+ T YT+RV G L+ V T + PS
Sbjct: 47 G---GHSGQTEAPGNATSAMLGPLSSSTTYTVRVTCLYPGGGSSTLTGRV---TTKKAPS 100
Query: 582 QPRDLRA 588
P +
Sbjct: 101 -PSSGPS 106
Score = 64.7 bits (158), Expect = 6e-13
Identities = 22/119 (18%), Positives = 39/119 (32%), Gaps = 17/119 (14%)
Query: 699 GEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVE 758
G ++ APP+++ +S + R+ WE P + ++ +V
Sbjct: 1 GSSGSSGL-----------APPRHLGFSDVSHDAARVFWEGAP-----RPVRLVRVTYVS 44
Query: 759 TGRSDSEASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDPS 817
+ S + N TS +L L T Y + V G + PS
Sbjct: 45 SEGGHSGQTEAP-GNATSAMLGPLSSSTTYTVRVTCLYPGGGSSTLTGRVTTKKAPSPS 102
Score = 48.6 bits (116), Expect = 3e-07
Identities = 16/92 (17%), Positives = 26/92 (28%), Gaps = 10/92 (10%)
Query: 624 PRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRI-GLVETYSLTGL 682
PR L D+ A + W + + + + G + L L
Sbjct: 11 PRHLGFSDVSHDAARVFWEGAP---RPVRLVRVTYVSSEGGHSGQTEAPGNATSAMLGPL 67
Query: 683 YPNTLYYIWLAAQSPRGEG------ATTPPIP 708
+T Y + + P G TT P
Sbjct: 68 SSSTTYTVRVTCLYPGGGSSTLTGRVTTKKAP 99
Score = 43.9 bits (104), Expect = 1e-05
Identities = 14/98 (14%), Positives = 26/98 (26%), Gaps = 16/98 (16%)
Query: 289 TGETEPGTAPRDVQVRPLSSSTMVIQWDEPE----------TPNGQITAKHHRRIGLVET 338
+ + PR + +S + W+ + + G +
Sbjct: 2 SSGSSGLAPPRHLGFSDVSHDAARVFWEGAPRPVRLVRVTYVSSEGGHSGQTEAPGNATS 61
Query: 339 YSLTGLYPNTLYYIWLAAQSPRGEG------ATTPPIP 370
L L +T Y + + P G TT P
Sbjct: 62 AMLGPLSSSTTYTVRVTCLYPGGGSSTLTGRVTTKKAP 99
Score = 34.3 bits (79), Expect = 0.033
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 852 DGGALELNVTGLQPDTIYTIQVAALTRKGDGD 883
G A + L T YT++V L G
Sbjct: 56 PGNATSAMLGPLSSSTTYTVRVTCLYPGGGSS 87
Score = 29.3 bits (66), Expect = 1.5
Identities = 5/30 (16%), Positives = 10/30 (33%)
Query: 31 TEPGTAPRDVQVRPLSSSTMVIQWDEPETP 60
+ PR + +S + W+ P
Sbjct: 5 SSGLAPPRHLGFSDVSHDAARVFWEGAPRP 34
>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like
modifier, S NOVO protein; 2.40A {Artificial gene}
Length = 97
Score = 83.6 bits (207), Expect = 1e-19
Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 1/95 (1%)
Query: 199 TLPVAPLDVKISEVTATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEIS-GIITTYYTV 257
++ P +++ T TS+ + W S ++ YY I Y N+P E + ++ T+
Sbjct: 3 SVSSVPTKLEVVAATPTSLLISWDASSSSVSYYRITYGETGGNSPVQEFTVPGSSSTATI 62
Query: 258 RNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGET 292
LSP +Y + A + S T
Sbjct: 63 SGLSPGVDYTITVYAYYSYYDLYYSYSPSSINYRT 97
Score = 82.8 bits (205), Expect = 2e-19
Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 6/95 (6%)
Query: 718 APPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSF 777
+ P + + TS+ ISW+ + YY++ + ETG + + ++
Sbjct: 6 SVPTKLEVVAATPTSLLISWDASS-----SSVSYYRITYGETGGNSPVQEFTVPGSSSTA 60
Query: 778 VLDELKKWTEYRIWVLAGTSIGDGP-SSYPITIRT 811
+ L +Y I V A S D S P +I
Sbjct: 61 TISGLSPGVDYTITVYAYYSYYDLYYSYSPSSINY 95
Score = 71.3 bits (175), Expect = 3e-15
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 7/92 (7%)
Query: 484 APRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLT-T 542
P ++V + ++++I WD ++ Y++ Y + S + V + T T
Sbjct: 7 VPTKLEVVAATPTSLLISWDASS---SSVSYYRITYGETGG--NSPVQEFTVPGSSSTAT 61
Query: 543 ISDLTPHTIYTIRVQAFTSVGPGPL-SAPVLV 573
IS L+P YTI V A+ S +P +
Sbjct: 62 ISGLSPGVDYTITVYAYYSYYDLYYSYSPSSI 93
Score = 48.5 bits (116), Expect = 3e-07
Identities = 16/92 (17%), Positives = 35/92 (38%), Gaps = 6/92 (6%)
Query: 624 PRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRI--GLVETYSLTG 681
P L V T++ ++W + ++ Y + + +T + G T +++G
Sbjct: 8 PTKLEVVAATPTSLLISWDASS---SSVSYYRITYGETGGNSPVQEFTVPGSSSTATISG 64
Query: 682 LYPNTLYYIWLAAQSPRGEG-ATTPPIPVRTK 712
L P Y I + A + + P + +
Sbjct: 65 LSPGVDYTITVYAYYSYYDLYYSYSPSSINYR 96
Score = 47.8 bits (114), Expect = 5e-07
Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 13/97 (13%)
Query: 290 GETEPGTAPRDVQVRPLSSSTMVIQWDEPETP-----------NGQITAKHHRRIGLVET 338
G + P ++V + ++++I WD + G + G T
Sbjct: 1 GSSVSS-VPTKLEVVAATPTSLLISWDASSSSVSYYRITYGETGGNSPVQEFTVPGSSST 59
Query: 339 YSLTGLYPNTLYYIWLAAQSPRGEG-ATTPPIPVRTK 374
+++GL P Y I + A + + P + +
Sbjct: 60 ATISGLSPGVDYTITVYAYYSYYDLYYSYSPSSINYR 96
Score = 37.0 bits (86), Expect = 0.003
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 852 DGGALELNVTGLQPDTIYTIQVAALTRKGDGD-RSKPETI 890
G + ++GL P YTI V A D P +I
Sbjct: 54 PGSSSTATISGLSPGVDYTITVYAYYSYYDLYYSYSPSSI 93
Score = 29.3 bits (66), Expect = 1.4
Identities = 5/36 (13%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 31 TEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITH 66
+ + P ++V + ++++I WD +++
Sbjct: 2 SSVSSVPTKLEVVAATPTSLLISWDASS---SSVSY 34
>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III
repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 83.6 bits (207), Expect = 2e-19
Identities = 31/96 (32%), Positives = 41/96 (42%), Gaps = 4/96 (4%)
Query: 484 APRDVQVRPLSSSTMVIQWDEPETPNG-QITGYKVYYTQDQSLPMSAWETQVVDNNQLT- 541
+P QV P SST +Q+DEPE G I YK + + + +
Sbjct: 9 SPSIDQVEP-YSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGI 67
Query: 542 -TISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQ 576
TI L P T Y +R+ A G G +SA KTQ
Sbjct: 68 VTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQ 103
Score = 71.7 bits (176), Expect = 2e-15
Identities = 19/100 (19%), Positives = 39/100 (39%), Gaps = 9/100 (9%)
Query: 198 LTLPVAPLDVKISEVTATSVRLDWTYPSET----LLYYVIQYKPKAANT----PYSEISG 249
+ P +P ++ E +++ ++ + P T +L Y +++ Y
Sbjct: 4 MDTPSSPSIDQV-EPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEA 62
Query: 250 IITTYYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITT 289
+ T+ L P T Y + A+N G G S+ + T
Sbjct: 63 SMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKT 102
Score = 62.0 bits (151), Expect = 7e-12
Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 10/106 (9%)
Query: 711 TKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGH--IVYYKLQFVETGRSDSEASI 768
+ P P EP S++ ++ ++ P + G I+ YK ++ G +
Sbjct: 2 SHMDTPS-SPSIDQVEP-YSSTAQVQFDEPE---ATGGVPILKYKAEWRAVGEEVWHSKW 56
Query: 769 VTLK---NQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRT 811
K + + LK T Y + + A G G S +T
Sbjct: 57 YDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKT 102
Score = 45.1 bits (107), Expect = 6e-06
Identities = 18/93 (19%), Positives = 39/93 (41%), Gaps = 6/93 (6%)
Query: 626 DLRAVDIQETAVTLAWSKPTHSG-ENIISYELYW-----NDTYAKAKHHRRIGLVETYSL 679
+ V+ + + + +P +G I+ Y+ W ++K + + ++
Sbjct: 11 SIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTI 70
Query: 680 TGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTK 712
GL P T Y + LAA + +G G + +T+
Sbjct: 71 VGLKPETTYAVRLAALNGKGLGEISAASEFKTQ 103
Score = 44.7 bits (106), Expect = 7e-06
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 19/96 (19%)
Query: 297 APRDVQVRPLSSSTMVIQWDEPETPNG-QIT-----------------AKHHRRIGLVET 338
+P QV P SST +Q+DEPE G I + +
Sbjct: 9 SPSIDQVEP-YSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGI 67
Query: 339 YSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTK 374
++ GL P T Y + LAA + +G G + +T+
Sbjct: 68 VTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQ 103
Score = 42.0 bits (99), Expect = 7e-05
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 860 VTGLQPDTIYTIQVAALTRKGDGDRSKPETIKT 892
+ GL+P+T Y +++AAL KG G+ S KT
Sbjct: 70 IVGLKPETTYAVRLAALNGKGLGEISAASEFKT 102
Score = 30.1 bits (68), Expect = 1.0
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 36 APRDVQVRPLSSSTMVIQWDEPETPNG-QITH 66
+P QV P SST +Q+DEPE G I
Sbjct: 9 SPSIDQVEP-YSSTAQVQFDEPEATGGVPILK 39
>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 121
Score = 83.9 bits (208), Expect = 2e-19
Identities = 31/126 (24%), Positives = 55/126 (43%), Gaps = 16/126 (12%)
Query: 180 GVIETSTIVKVQCKYAPLLTLPVAP--LDVKISEVTATSVRLDWTYPSE---TLLYYVIQ 234
G S ++V+ LP AP +S V ++ L WT P + L+ Y+++
Sbjct: 4 GSSGRSAHLRVR-------QLPHAPEHPVATLSTVERRAINLTWTKPFDGNSPLIRYILE 56
Query: 235 YKPKAAN--TPYSEISGIITTYYTVRNLSPYTEYEFYIIAVNNLGRGPPSSP-AVITTGE 291
A + + T+ TV+ L P Y+F + AVN++G+G S ++ E
Sbjct: 57 MSENNAPWTVLLASVDPKATSV-TVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSLPE 115
Query: 292 TEPGTA 297
+ P +
Sbjct: 116 SGPSSG 121
Score = 62.0 bits (151), Expect = 9e-12
Identities = 26/124 (20%), Positives = 42/124 (33%), Gaps = 14/124 (11%)
Query: 464 GEGATTPPIPVRTKQYEPGTAPRDVQVRPL--SSSTMVIQWDEPETPNGQITGYKVYYTQ 521
G + + VR P AP + + W +P N + Y + ++
Sbjct: 4 GSSGRSAHLRVRQL---PH-APEHPVATLSTVERRAINLTWTKPFDGNSPLIRYILEMSE 59
Query: 522 DQSLPMSAWETQV--VDNNQLT-TISDLTPHTIYTIRVQAFTSVGPGPLSAPV-LVKTQQ 577
+ + W + VD + T+ L P Y R+ A VG G S V +
Sbjct: 60 NNA----PWTVLLASVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSLPE 115
Query: 578 GVPS 581
PS
Sbjct: 116 SGPS 119
Score = 60.4 bits (147), Expect = 4e-11
Identities = 24/123 (19%), Positives = 43/123 (34%), Gaps = 11/123 (8%)
Query: 699 GEGATTPPIPVRTKQYVPGAPPQ-NVSCEPLSSTSIRISWEPPPVERSNGH--IVYYKLQ 755
G + + VR +P AP + + +I ++W P +G+ ++ Y L+
Sbjct: 4 GSSGRSAHLRVRQ---LPHAPEHPVATLSTVERRAINLTWTKP----FDGNSPLIRYILE 56
Query: 756 FVETGRSDSEASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPIT-IRTHED 814
E + TS + L Y+ + A +G G S + E
Sbjct: 57 MSENNAPWTVLLASVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSLPES 116
Query: 815 DPS 817
PS
Sbjct: 117 GPS 119
Score = 42.0 bits (99), Expect = 1e-04
Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 3/95 (3%)
Query: 627 LRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAK--AKHHRRIGLVETYSLTGLYP 684
++ A+ L W+KP +I Y L ++ A + ++ GL P
Sbjct: 26 ATLSTVERRAINLTWTKPFDGNSPLIRYILEMSENNAPWTVLLASVDPKATSVTVKGLVP 85
Query: 685 NTLYYIWLAAQSPRGEGATTPPI-PVRTKQYVPGA 718
Y L A + G+G + V + P +
Sbjct: 86 ARSYQFRLCAVNDVGKGQFSKDTERVSLPESGPSS 120
Score = 37.3 bits (87), Expect = 0.003
Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 846 MRFDVSDGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKP-ETIKTPGGVP 897
+ D A + V GL P Y ++ A+ G G SK E + P P
Sbjct: 66 VLLASVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSLPESGP 118
Score = 29.2 bits (66), Expect = 2.0
Identities = 17/114 (14%), Positives = 30/114 (26%), Gaps = 19/114 (16%)
Query: 279 GPPSSPAVITTGETEPGTAPRDVQVRPL--SSSTMVIQWDEPETPNGQITA--------- 327
G A + + P AP + + W +P N +
Sbjct: 4 GSSGRSAHLRVRQL-PH-APEHPVATLSTVERRAINLTWTKPFDGNSPLIRYILEMSENN 61
Query: 328 -----KHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPI-PVRTKQ 375
+ ++ GL P Y L A + G+G + V +
Sbjct: 62 APWTVLLASVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSLPE 115
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 88.3 bits (219), Expect = 3e-19
Identities = 49/92 (53%), Positives = 65/92 (70%), Gaps = 2/92 (2%)
Query: 100 VRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRNV 159
V+ V P+FSI P + E+M +N++CVAVGSPMP+VKW +G +LTP+D +PVGRNV
Sbjct: 201 VQNVAPRFSILPMSH-EIMPGGNVNITCVAVGSPMPYVKWMQG-AEDLTPEDDMPVGRNV 258
Query: 160 LTLDRVTESENYTCIAASVLGVIETSTIVKVQ 191
L L V +S NYTC+A S LGVIE + V+
Sbjct: 259 LELTDVKDSANYTCVAMSSLGVIEAVAQITVK 290
Score = 59.8 bits (145), Expect = 1e-09
Identities = 23/119 (19%), Positives = 40/119 (33%), Gaps = 11/119 (9%)
Query: 103 VPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRK-GQNIELTPDDKLPVGRN--- 158
PP+F P + + C A G P P V W K G+ + + + +
Sbjct: 5 EPPRFIKEPKDQ-IGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGA 63
Query: 159 VLTLDRVTESE---NYTCIAASVLGVIETSTIVKVQCKYAPLLTLP---VAPLDVKISE 211
VL + + Y C+A + +G I + V + P + P +
Sbjct: 64 VLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVER 122
Score = 59.5 bits (144), Expect = 1e-09
Identities = 27/125 (21%), Positives = 49/125 (39%), Gaps = 12/125 (9%)
Query: 95 QVADPVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRK-GQNIELTPDDK- 152
D + P + P L V + C A G+P P + W K ++ + +
Sbjct: 99 LREDQLPSGFPNIDMGP-QLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGR 157
Query: 153 -LPVGRNVLTLDRVTESE--NYTCIAASVLGVIETST---IVKVQCKYAPLLTLPVAPLD 206
+ L ++ E++ Y C+A + GV +S V+VQ AP ++ P+
Sbjct: 158 IKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQ-NVAPRFSIL--PMS 214
Query: 207 VKISE 211
+I
Sbjct: 215 HEIMP 219
>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor
complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 b.1.2.1 PDB: 1p9m_A
Length = 303
Score = 88.3 bits (218), Expect = 4e-19
Identities = 50/338 (14%), Positives = 98/338 (28%), Gaps = 54/338 (15%)
Query: 485 PRDVQVRPLSSSTMVIQWDEPETPNGQITGYK-VYYTQDQSLPMSAWETQVVDNNQLTTI 543
P V+ S+ T V E + V+ T ++P + + +T
Sbjct: 11 PESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFT 70
Query: 544 SDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLAWSKP 603
+ + T + F + ++ P +P++L + + + W
Sbjct: 71 DIASLNIQLTCNILTFGQLEQNVYGITIIS---GLPPEKPKNLSCIVNEGKKMRCEWDGG 127
Query: 604 THSGENIISYELYWNDTYAKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYA 663
+ ++ L K D
Sbjct: 128 RETHL-ETNFTLKSEWATHKFAD------------------------------------- 149
Query: 664 KAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQNV 723
+R +W+ A++ G+ T+ I V PP N+
Sbjct: 150 --CKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGK-VTSDHINFDPVYKVKPNPPHNL 206
Query: 724 SCEPLSST--SIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIV--TLKNQTSFVL 779
S ++++W P + I+ Y +Q+ S T ++SF +
Sbjct: 207 SVINSEELSSILKLTWTNPS--IKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTV 264
Query: 780 DELKKWTEYRIWVLAGTSIGDGPSSY---PITIRTHED 814
+LK +TEY + G G S + T+ED
Sbjct: 265 QDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYED 302
Score = 86.0 bits (212), Expect = 2e-18
Identities = 43/300 (14%), Positives = 92/300 (30%), Gaps = 45/300 (15%)
Query: 95 QVADPVRRVPPQFSIPPPALLEVMLDSPLNLSCV-------AVGSPMPFVKWRKGQNIEL 147
++ DP + P+ + V L S CV ++ W+ + +
Sbjct: 1 ELLDPCGYISPESPV-------VQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTN-HFTI 52
Query: 148 TPDDKLPVGRNVLTL---DRVTESENYTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAP 204
+ + R ++ D + + TC + + + + + P P
Sbjct: 53 PKEQYTIINRTASSVTFTDIASLNIQLTCNILTFGQLEQNVYGITIISGL-----PPEKP 107
Query: 205 LDVKISEVTATSVRLDWTYPSETLLY--YVIQYK-PKAANTPYSEISGIITTYYTVRNLS 261
++ +R +W ET L + ++ + T+ +
Sbjct: 108 KNLSCIVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTV 167
Query: 262 PYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLS--SSTMVIQWDEPE 319
+ E ++ A N LG+ + +P P ++ V SS + + W P
Sbjct: 168 YFVNIEVWVEAENALGKVTSDHINFDPVYKVKPN-PPHNLSVINSEELSSILKLTWTNPS 226
Query: 320 TPNGQIT----------AKHHRRIGLVET------YSLTGLYPNTLYYIWLAAQSPRGEG 363
+ I A +I +T +++ L P T Y + G+G
Sbjct: 227 IKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKG 286
Score = 70.6 bits (172), Expect = 3e-13
Identities = 25/127 (19%), Positives = 45/127 (35%), Gaps = 4/127 (3%)
Query: 447 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLS--SSTMVIQWDE 504
+W+ A++ G+ T+ I P ++ V SS + + W
Sbjct: 166 TVYFVNIEVWVEAENALGK-VTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTN 224
Query: 505 PETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLT-TISDLTPHTIYTIRVQAFTSVG 563
P + I Y + Y + S + + + + T+ DL P T Y R++ G
Sbjct: 225 PSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDG 284
Query: 564 PGPLSAP 570
G S
Sbjct: 285 KGYWSDW 291
Score = 64.8 bits (157), Expect = 2e-11
Identities = 34/287 (11%), Positives = 70/287 (24%), Gaps = 44/287 (15%)
Query: 638 TLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVETYSLTG--LYPNTLYYIWLAAQ 695
L + N N + + I + N +
Sbjct: 27 VLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTDIASLNIQLTCNILTF 86
Query: 696 SPRGEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQ 755
+ I P P+N+SC +R W+ R + L+
Sbjct: 87 GQLEQNVYGITIIS---GLPPE-KPKNLSCIVNEGKKMRCEWDGG---RETHLETNFTLK 139
Query: 756 FVETGRSDSEASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPI---TIRTH 812
++ + V + +WV A ++G S + +
Sbjct: 140 SEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVK 199
Query: 813 EDDPSEVCPTQNDFRKN-----------------------KKTNGSNFKGGYLNDPMRFD 849
+ P + ++ + + + S + D
Sbjct: 200 PNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPED----- 254
Query: 850 VSDGGALELNVTGLQPDTIYTIQVAALTRKGDG---DRSKPETIKTP 893
+ V L+P T Y ++ + G G D S+ + T
Sbjct: 255 -TASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITY 300
Score = 61.8 bits (149), Expect = 3e-10
Identities = 28/255 (10%), Positives = 63/255 (24%), Gaps = 45/255 (17%)
Query: 449 PNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETP 508
N + + I P P+++ M +WD
Sbjct: 75 LNIQLTCNILTFGQLEQNVYGITIISGL----PPEKPKNLSCIVNEGKKMRCEWDGGRET 130
Query: 509 NGQITGYKVYYTQDQSLPMSAWETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVGPGPLS 568
+ T + + + + + T + V+A ++G
Sbjct: 131 HL-ETNFTLKSEWATH-KFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSD 188
Query: 569 APVLVKTQQGVPSQPRDLRA--VDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKPRD 626
+ P+ P +L + + + L W+ P+ I+ Y +
Sbjct: 189 HINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQ---------- 238
Query: 627 LRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVETYSLTGLYPNT 686
Y T+++ ++++ L P T
Sbjct: 239 ---------------------------YRTKDASTWSQIPPEDTASTRSSFTVQDLKPFT 271
Query: 687 LYYIWLAAQSPRGEG 701
Y + G+G
Sbjct: 272 EYVFRIRCMKEDGKG 286
Score = 55.2 bits (132), Expect = 3e-08
Identities = 33/100 (33%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
Query: 201 PVAPLDVKISEVTATSVRLDWTYPSET---LLYYVIQYKPKAA---NTPYSEISGIITTY 254
P L V SE ++ ++L WT PS +L Y IQY+ K A + E + +
Sbjct: 202 PPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSS 261
Query: 255 YTVRNLSPYTEYEFYIIAVNNLGRGP---PSSPAVITTGE 291
+TV++L P+TEY F I + G+G S A T E
Sbjct: 262 FTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYE 301
>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 105
Score = 82.1 bits (203), Expect = 5e-19
Identities = 22/97 (22%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
Query: 199 TLPVAPLDVKISEVTATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEIS-GIITTYYTV 257
+ P ++ ++ T S+++ WT P +L+Y + Y P + P +S ++ T+
Sbjct: 6 SGRSPPSNLALASETPDSLQVSWTPPLGRVLHYWLTYAPASGLGPEKSVSVPGARSHVTL 65
Query: 258 RNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEP 294
+L T+Y + A+ GR S T + P
Sbjct: 66 PDLQAATKYRVLVSAIYAAGRSEAVSATGQTACPSGP 102
Score = 76.7 bits (189), Expect = 5e-17
Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 16/119 (13%)
Query: 699 GEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVE 758
G ++ +PP N++ + S+++SW PP G +++Y L +
Sbjct: 1 GSSGSSGR-----------SPPSNLALASETPDSLQVSWTPP-----LGRVLHYWLTYAP 44
Query: 759 TGRSDSEASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDPS 817
E S+ ++ L +L+ T+YR+ V A + G + PS
Sbjct: 45 ASGLGPEKSVSVPGARSHVTLPDLQAATKYRVLVSAIYAAGRSEAVSATGQTACPSGPS 103
Score = 73.2 bits (180), Expect = 6e-16
Identities = 22/123 (17%), Positives = 41/123 (33%), Gaps = 20/123 (16%)
Query: 464 GEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQ 523
G ++ + P ++ + + ++ + W P G++ Y + Y
Sbjct: 1 GSSGSSGR-----------SPPSNLALASETPDSLQVSWTPP---LGRVLHYWLTYAPAS 46
Query: 524 SLPMSAWETQVVDNNQLT-TISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPSQ 582
L ++ V + T+ DL T Y + V A + G V Q PS
Sbjct: 47 GLGPE--KSVSVPGARSHVTLPDLQAATKYRVLVSAIYAAGRSE---AVSATGQTACPSG 101
Query: 583 PRD 585
P
Sbjct: 102 PSS 104
Score = 49.4 bits (118), Expect = 1e-07
Identities = 15/99 (15%), Positives = 30/99 (30%), Gaps = 8/99 (8%)
Query: 624 PRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRI--GLVETYSLTG 681
P +L ++ ++W+ P ++ Y L + G +L
Sbjct: 11 PSNLALASETPDSLQVSWTPPL---GRVLHYWLTYAPASGLGPEKSVSVPGARSHVTLPD 67
Query: 682 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPP 720
L T Y + ++A G + + P P
Sbjct: 68 LQAATKYRVLVSAIYAAGRS---EAVSATGQTACPSGPS 103
Score = 45.9 bits (109), Expect = 2e-06
Identities = 14/98 (14%), Positives = 29/98 (29%), Gaps = 18/98 (18%)
Query: 289 TGETEPGTAPRDVQVRPLSSSTMVIQWDEPETP-----------NGQITAKHHRRIGLVE 337
+ + + P ++ + + ++ + W P +G K G
Sbjct: 2 SSGSSGRSPPSNLALASETPDSLQVSWTPPLGRVLHYWLTYAPASGLGPEKSVSVPGARS 61
Query: 338 TYSLTGLYPNTLYYIWLAAQSPRGEG-------ATTPP 368
+L L T Y + ++A G T P
Sbjct: 62 HVTLPDLQAATKYRVLVSAIYAAGRSEAVSATGQTACP 99
Score = 35.9 bits (83), Expect = 0.008
Identities = 9/46 (19%), Positives = 15/46 (32%)
Query: 852 DGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKTPGGVP 897
G + + LQ T Y + V+A+ G + P
Sbjct: 57 PGARSHVTLPDLQAATKYRVLVSAIYAAGRSEAVSATGQTACPSGP 102
Score = 30.1 bits (68), Expect = 0.96
Identities = 5/36 (13%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 31 TEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITH 66
+ + P ++ + + ++ + W P G++ H
Sbjct: 5 SSGRSPPSNLALASETPDSLQVSWTP---PLGRVLH 37
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 86.8 bits (214), Expect = 1e-18
Identities = 38/291 (13%), Positives = 76/291 (26%), Gaps = 41/291 (14%)
Query: 102 RVPPQFSIPPPALLEVMLDSPLNLSCVAV-GSPMPFVKWRKGQNIELTPDDKLPVGRNVL 160
R P + +L + + L+C V V W + + + L
Sbjct: 4 RRCPAQEVAR-GVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRL 62
Query: 161 TLDRVTESE--NYTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISEVTATSVR 218
L V + NY+C A G + + V P P + ++V
Sbjct: 63 LLRSVQLHDSGNYSCYRA---GRPAGTVHLLVD-------VPPEEPQLSCFRKSPLSNVV 112
Query: 219 LDWTYPSETLLY--YVIQYKPKAANTPYSEI-------SGIITTYYTVRNLSPYTEYEFY 269
+W S L V+ + + + + Y
Sbjct: 113 CEWGPRSTPSLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFYIVS 172
Query: 270 IIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPL--SSSTMVIQWDEPET------- 320
+ +++G S P ++ V + + + + W +P +
Sbjct: 173 MCVASSVGSK-FSKTQTFQGCGILQPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYR 231
Query: 321 --------PNGQITAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEG 363
T L + + + + L AQ G+G
Sbjct: 232 LRFELRYRAERSKTFTTWMVKDLQHHCVIHDAWSGLRHVVQLRAQEEFGQG 282
Score = 80.3 bits (197), Expect = 2e-16
Identities = 26/227 (11%), Positives = 65/227 (28%), Gaps = 16/227 (7%)
Query: 604 THSGENIISYELYWNDTYAKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELY------ 657
+G + L + +P+ + V W P + L
Sbjct: 78 YRAGRPAGTVHLLVDVPPEEPQLSCFRKSPLSNVVCEW-GPRSTPSLTTKAVLLVRKFQN 136
Query: 658 --WNDTYAKAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYV 715
D ++ + ++ Y + + S G + + +
Sbjct: 137 SPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFYIVSMCVASSVG-SKFSKTQTFQGCGIL 195
Query: 716 PGAPPQNVSCEPL--SSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKN 773
PP N++ + + + ++W+ P S+ + + ++L++ +V
Sbjct: 196 QPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKTFTTWMVK-DL 254
Query: 774 QTSFVLDELKKWTEYRIWVLAGTSIGDGPSS---YPITIRTHEDDPS 817
Q V+ + + + + A G G S + S
Sbjct: 255 QHHCVIHDAWSGLRHVVQLRAQEEFGQGEWSEWSPEAMGTPWTESRS 301
Score = 69.9 bits (170), Expect = 7e-13
Identities = 25/219 (11%), Positives = 65/219 (29%), Gaps = 20/219 (9%)
Query: 397 ETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYGKTPGFGEQALYPNTLYYIW 456
S L + + SP + ++++ ++ Y +
Sbjct: 116 GPRSTPSLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFS---CQLAVPEGDSSFYIVS 172
Query: 457 LAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPL--SSSTMVIQWDEPET--PNGQI 512
+ S G + + P ++ V + + + + W +P + +
Sbjct: 173 MCVASSVG-SKFSKTQTFQGCGILQPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYR 231
Query: 513 TGYKVYYTQDQSLPMSAWETQVVDNNQLT-TISDLTPHTIYTIRVQAFTSVGPGPLSA-- 569
+++ Y ++S + T +V + Q I D + ++++A G G S
Sbjct: 232 LRFELRYRAERS---KTFTTWMVKDLQHHCVIHDAWSGLRHVVQLRAQEEFGQGEWSEWS 288
Query: 570 -PVLVKTQQGVPSQPRDLRAVDIQETAVTLAWSKPTHSG 607
+ S P + + + A +
Sbjct: 289 PEAMGTPWTESRSPP-----AENEVSTPMQALTTNKDDD 322
Score = 67.6 bits (164), Expect = 4e-12
Identities = 27/161 (16%), Positives = 55/161 (34%), Gaps = 11/161 (6%)
Query: 166 TESENYT--CIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISEVTATSVRLDWTY 223
+S Y AS +G + T C P A + V + + W
Sbjct: 164 GDSSFYIVSMCVASSVGSKFSKTQTFQGCGILQ--PDPPANITVTAVARNPRWLSVTWQD 221
Query: 224 PSET-----LLYYVIQYKPKAANTPYSEISGIITTYYTVRNLSPYTEYEFYIIAVNNLGR 278
P L + ++Y+ + + T + + + + + + + + A G+
Sbjct: 222 PHSWNSSFYRLRFELRYRAERSKTFTTWMVKDLQHHCVIHDAWSGLRHVVQLRAQEEFGQ 281
Query: 279 GPPS--SPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDE 317
G S SP + T TE + P + +V + + D+
Sbjct: 282 GEWSEWSPEAMGTPWTESRSPPAENEVSTPMQALTTNKDDD 322
Score = 56.8 bits (136), Expect = 1e-08
Identities = 34/266 (12%), Positives = 69/266 (25%), Gaps = 55/266 (20%)
Query: 480 EPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDN-- 537
P P+ R S +V +W P + T + + Q+ P ++ +
Sbjct: 93 VPPEEPQLSCFRKSPLSNVVCEW-GPRSTPSLTTKAVLLVRKFQNSPAEDFQEPCQYSQE 151
Query: 538 ---NQLTTISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPSQPRDLRAVDIQET 594
+ Y + + +SVG S + + P
Sbjct: 152 SQKFSCQLAVPEGDSSFYIVSMCVASSVGSKF-SKTQTFQGCGILQPDP----------- 199
Query: 595 AVTLAWSKPTHSGENIISYELYWNDTYAKPRDLRA--VDIQETAVTLAWSKPT--HSGEN 650
P ++ V +++ W P +S
Sbjct: 200 -----------------------------PANITVTAVARNPRWLSVTWQDPHSWNSSFY 230
Query: 651 IISYEL-YWNDTYAKAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEG---ATTPP 706
+ +EL Y + L + + + + L AQ G+G +P
Sbjct: 231 RLRFELRYRAERSKTFTTWMVKDLQHHCVIHDAWSGLRHVVQLRAQEEFGQGEWSEWSPE 290
Query: 707 IPVRTKQYVPGAPPQNVSCEPLSSTS 732
P +N P+ + +
Sbjct: 291 AMGTPWTESRSPPAENEVSTPMQALT 316
Score = 42.2 bits (98), Expect = 6e-04
Identities = 21/214 (9%), Positives = 47/214 (21%), Gaps = 31/214 (14%)
Query: 715 VPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGH-IVYYKLQFVETGRSDSE--ASIVTL 771
VP PQ +++ W P ++ + E
Sbjct: 93 VPPEEPQLSCFRKSPLSNVVCEWGPRSTPSLTTKAVLLVRKFQNSPAEDFQEPCQYSQES 152
Query: 772 KNQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDPSEVCPTQNDFRKNKK 831
+ + + + Y + + +S+G S T + + P N
Sbjct: 153 QKFSCQLAVPEGDSSFYIVSMCVASSVGSK-FSKTQTFQGCGILQPD--PPANITVTAVA 209
Query: 832 TNGSN----------FKGGYL------------NDPMRFDVSDGGALELNVTGLQPDTIY 869
N + + + + + +
Sbjct: 210 RNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKTFTTWMVKDLQHHCVIHDAWSGLRH 269
Query: 870 TIQVAALTRKGDG---DRSKPETIKTPGGVPNRP 900
+Q+ A G G + S + P
Sbjct: 270 VVQLRAQEEFGQGEWSEWSPEAMGTPWTESRSPP 303
>1x4x_A Fibronectin type-III domain containing protein 3A; FN3,
immunoglobulin-like beta- sandwich fold, KIAA0970,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 106
Score = 80.8 bits (200), Expect = 1e-18
Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 5/100 (5%)
Query: 201 PVAPLDVKISEVTATSVRLDWTYPSET---LLYYVIQYKPKAANTPYSEISGIITTYYTV 257
P +++ +AT +++W P + Y +++ Y +
Sbjct: 8 PDQCKPPQVTCRSATCAQVNWEVPLSNGTDVTEYRLEWGG--VEGSMQICYCGPGLSYEI 65
Query: 258 RNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTA 297
+ LSP T Y + A++ +G GP S T + ++
Sbjct: 66 KGLSPATTYYCRVQALSVVGAGPFSEVVACVTPPSSGPSS 105
Score = 79.7 bits (197), Expect = 4e-18
Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 4/97 (4%)
Query: 484 APRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLTTI 543
+ QV S++ + W+ P + +T Y++ + + + + I
Sbjct: 10 QCKPPQVTCRSATCAQVNWEVPLSNGTDVTEYRLEWGGVEG----SMQICYCGPGLSYEI 65
Query: 544 SDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVP 580
L+P T Y RVQA + VG GP S V T
Sbjct: 66 KGLSPATTYYCRVQALSVVGAGPFSEVVACVTPPSSG 102
Score = 68.9 bits (169), Expect = 2e-14
Identities = 22/97 (22%), Positives = 34/97 (35%), Gaps = 4/97 (4%)
Query: 624 PRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVETYSLTGLY 683
+ + T + W P +G ++ Y L W G +Y + GL
Sbjct: 11 CKPPQVTCRSATCAQVNWEVPLSNGTDVTEYRLEWGGVEGS-MQICYCGPGLSYEIKGLS 69
Query: 684 PNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPP 720
P T YY + A S G G + + T P + P
Sbjct: 70 PATTYYCRVQALSVVGAGPFSEVVACVTP---PSSGP 103
Score = 68.1 bits (167), Expect = 4e-14
Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 6/106 (5%)
Query: 711 TKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVT 770
+ P + S+T +++WE P + + Y+L++ G + I
Sbjct: 3 SGSSGPDQC-KPPQVTCRSATCAQVNWEVPL--SNGTDVTEYRLEW---GGVEGSMQICY 56
Query: 771 LKNQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDP 816
S+ + L T Y V A + +G GP S + T
Sbjct: 57 CGPGLSYEIKGLSPATTYYCRVQALSVVGAGPFSEVVACVTPPSSG 102
Score = 57.7 bits (140), Expect = 2e-10
Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 12/98 (12%)
Query: 288 TTGETEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQIT-----------AKHHRRIGLV 336
++G + P + QV S++ + W+ P + +T + G
Sbjct: 2 SSGSSGPD-QCKPPQVTCRSATCAQVNWEVPLSNGTDVTEYRLEWGGVEGSMQICYCGPG 60
Query: 337 ETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTK 374
+Y + GL P T YY + A S G G + + T
Sbjct: 61 LSYEIKGLSPATTYYCRVQALSVVGAGPFSEVVACVTP 98
Score = 41.1 bits (97), Expect = 1e-04
Identities = 15/48 (31%), Positives = 19/48 (39%)
Query: 850 VSDGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKTPGGVP 897
G L + GL P T Y +V AL+ G G S+ TP
Sbjct: 55 CYCGPGLSYEIKGLSPATTYYCRVQALSVVGAGPFSEVVACVTPPSSG 102
Score = 30.7 bits (70), Expect = 0.57
Identities = 10/38 (26%), Positives = 15/38 (39%)
Query: 447 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTA 484
L P T YY + A S G G + + T ++
Sbjct: 68 LSPATTYYCRVQALSVVGAGPFSEVVACVTPPSSGPSS 105
Score = 30.3 bits (69), Expect = 0.79
Identities = 6/37 (16%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 31 TEPG--TAPRDVQVRPLSSSTMVIQWDEPETPNGQIT 65
+ + QV S++ + W+ P + +T
Sbjct: 3 SGSSGPDQCKPPQVTCRSATCAQVNWEVPLSNGTDVT 39
>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de
novo; 2.50A {Synthetic}
Length = 98
Score = 80.6 bits (199), Expect = 2e-18
Identities = 28/93 (30%), Positives = 38/93 (40%), Gaps = 1/93 (1%)
Query: 203 APLDVKISEVTATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEIS-GIITTYYTVRNLS 261
AP ++ +SEVT S+RL WT P ++IQY+ ++ Y + L
Sbjct: 4 APKNLVVSEVTEDSLRLSWTAPDAAFDSFMIQYQESEKVGEAINLTVPGSERSYDLTGLK 63
Query: 262 PYTEYEFYIIAVNNLGRGPPSSPAVITTGETEP 294
P TEY I V R P S T G
Sbjct: 64 PGTEYTVSIYGVKGGHRSNPLSAEFTTGGHHHH 96
Score = 55.9 bits (135), Expect = 6e-10
Identities = 12/84 (14%), Positives = 33/84 (39%), Gaps = 6/84 (7%)
Query: 484 APRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLT-T 542
AP+++ V ++ ++ + W P + + + Y + + + V ++ +
Sbjct: 4 APKNLVVSEVTEDSLRLSWTAP---DAAFDSFMIQYQESEKV--GEAINLTVPGSERSYD 58
Query: 543 ISDLTPHTIYTIRVQAFTSVGPGP 566
++ L P T YT+ +
Sbjct: 59 LTGLKPGTEYTVSIYGVKGGHRSN 82
Score = 55.9 bits (135), Expect = 7e-10
Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 6/93 (6%)
Query: 719 PPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFV 778
P+N+ ++ S+R+SW P + + +Q+ E+ + ++ ++ S+
Sbjct: 4 APKNLVVSEVTEDSLRLSWTAP-----DAAFDSFMIQYQESEKVGEAINLTVPGSERSYD 58
Query: 779 LDELKKWTEYRIWVLAGTSIGDGPSSYPITIRT 811
L LK TEY + + T
Sbjct: 59 LTGLKPGTEYTVSIYGVKGGHRSNPLS-AEFTT 90
Score = 45.9 bits (109), Expect = 2e-06
Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 11/93 (11%)
Query: 624 PRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRI--GLVETYSLTG 681
P++L ++ E ++ L+W+ P S+ + + ++ + G +Y LTG
Sbjct: 5 PKNLVVSEVTEDSLRLSWTAPD---AAFDSFMIQYQESEKVGEAINLTVPGSERSYDLTG 61
Query: 682 LYPNTLYYIWLAAQSPRGEG------ATTPPIP 708
L P T Y + + TT
Sbjct: 62 LKPGTEYTVSIYGVKGGHRSNPLSAEFTTGGHH 94
Score = 38.6 bits (90), Expect = 9e-04
Identities = 17/91 (18%), Positives = 30/91 (32%), Gaps = 17/91 (18%)
Query: 297 APRDVQVRPLSSSTMVIQWDEPETP-----------NGQITAKHHRRIGLVETYSLTGLY 345
AP+++ V ++ ++ + W P+ A + G +Y LTGL
Sbjct: 4 APKNLVVSEVTEDSLRLSWTAPDAAFDSFMIQYQESEKVGEAINLTVPGSERSYDLTGLK 63
Query: 346 PNTLYYIWLAAQSPRGEG------ATTPPIP 370
P T Y + + TT
Sbjct: 64 PGTEYTVSIYGVKGGHRSNPLSAEFTTGGHH 94
Score = 37.4 bits (87), Expect = 0.002
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 852 DGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIK-TPGGVPNRPH 901
G ++TGL+P T YT+ + + RS P + + T GG + H
Sbjct: 51 PGSERSYDLTGLKPGTEYTVSIYGVKGGH---RSNPLSAEFTTGGHHHHHH 98
Score = 28.6 bits (64), Expect = 2.6
Identities = 10/39 (25%), Positives = 13/39 (33%), Gaps = 6/39 (15%)
Query: 398 TYSLTGLYPNTLYYIWLAAQSPRGEG------ATTPPIP 430
+Y LTGL P T Y + + TT
Sbjct: 56 SYDLTGLKPGTEYTVSIYGVKGGHRSNPLSAEFTTGGHH 94
>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell
adhesion, coiled coil, EGF-like domain, extracellular
matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A
1ten_A
Length = 104
Score = 80.5 bits (199), Expect = 2e-18
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
Query: 203 APLDVKISEVTATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEIS-GIITTYYTVRNLS 261
AP +++ +VT T+ + W PS+ + + + Y K + I Y++ NL
Sbjct: 5 APSQIEVKDVTDTTALITWMPPSQPVDGFELTYGIKDVPGDRTTIDLTEDENQYSIGNLK 64
Query: 262 PYTEYEFYIIAVNNLGRGPPSSPAVITTGETEP 294
P TEYE +I+ P+ TTG
Sbjct: 65 PDTEYEVSLISRRGDMSSNPAK-ETFTTGLAAA 96
Score = 69.0 bits (169), Expect = 2e-14
Identities = 16/101 (15%), Positives = 38/101 (37%), Gaps = 6/101 (5%)
Query: 719 PPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFV 778
P + + ++ T+ I+W PP + + ++L + +I +++ +
Sbjct: 5 APSQIEVKDVTDTTALITWMPP-----SQPVDGFELTYGIKDVPGDRTTIDLTEDENQYS 59
Query: 779 LDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDPSEV 819
+ LK TEY + +++ + T T E
Sbjct: 60 IGNLKPDTEYEVSLISRRGDMSSNPAK-ETFTTGLAAALEH 99
Score = 65.1 bits (159), Expect = 5e-13
Identities = 17/101 (16%), Positives = 40/101 (39%), Gaps = 5/101 (4%)
Query: 484 APRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLTTI 543
AP ++V+ ++ +T +I W P + + G+++ Y + +P + ++ +I
Sbjct: 5 APSQIEVKDVTDTTALITWMPP---SQPVDGFELTY-GIKDVPGDRTTIDLTEDENQYSI 60
Query: 544 SDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPSQPR 584
+L P T Y + + + A T +
Sbjct: 61 GNLKPDTEYEVSLISRRGDMSSN-PAKETFTTGLAAALEHH 100
Score = 46.2 bits (110), Expect = 2e-06
Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 5/80 (6%)
Query: 624 PRDLRAVDIQETAVTLAWSKPTHSGENIISYELYW--NDTYAKAKHHRRIGLVETYSLTG 681
P + D+ +T + W P+ + + +EL + D YS+
Sbjct: 6 PSQIEVKDVTDTTALITWMPPS---QPVDGFELTYGIKDVPGDRTTIDLTEDENQYSIGN 62
Query: 682 LYPNTLYYIWLAAQSPRGEG 701
L P+T Y + L ++
Sbjct: 63 LKPDTEYEVSLISRRGDMSS 82
Score = 41.2 bits (97), Expect = 1e-04
Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 11/78 (14%)
Query: 297 APRDVQVRPLSSSTMVIQWDEP-----------ETPNGQITAKHHRRIGLVETYSLTGLY 345
AP ++V+ ++ +T +I W P + YS+ L
Sbjct: 5 APSQIEVKDVTDTTALITWMPPSQPVDGFELTYGIKDVPGDRTTIDLTEDENQYSIGNLK 64
Query: 346 PNTLYYIWLAAQSPRGEG 363
P+T Y + L ++
Sbjct: 65 PDTEYEVSLISRRGDMSS 82
Score = 35.1 bits (81), Expect = 0.014
Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 852 DGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKTPGGVPNRPHVN 903
+ ++ L+PDT Y + + + + +K ET T H +
Sbjct: 52 TEDENQYSIGNLKPDTEYEVSLISRRGDMSSNPAK-ETFTTGLAAALEHHHH 102
Score = 28.1 bits (63), Expect = 3.8
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 398 TYSLTGLYPNTLYYIWLAAQSPRGEG 423
YS+ L P+T Y + L ++
Sbjct: 57 QYSIGNLKPDTEYEVSLISRRGDMSS 82
>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes
(CDON)binding...; fibronectin type III, FN3; NMR {Mus
musculus} SCOP: b.1.2.1
Length = 121
Score = 80.9 bits (200), Expect = 2e-18
Identities = 25/125 (20%), Positives = 42/125 (33%), Gaps = 11/125 (8%)
Query: 180 GVIETSTIVKVQCKYAPLLTLPVAPLDVKISEVTATSVRLDWTYPSE---TLLYYVIQYK 236
G +S + +P P AP IS + TSV + W + + ++YK
Sbjct: 1 GSSGSSGSQPDHGRLSP----PEAPDRPTISTASETSVYVTWIPRGNGGFPIQSFRVEYK 56
Query: 237 PKAAN---TPYSEISGIITTYYTVRNLSPYTEYEFYIIAVNNLGRGPPSSP-AVITTGET 292
+ + L Y+F + A+N LG PS+P +
Sbjct: 57 KLKKVGDWILATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVSGS 116
Query: 293 EPGTA 297
P +
Sbjct: 117 GPSSG 121
Score = 62.4 bits (152), Expect = 6e-12
Identities = 24/125 (19%), Positives = 46/125 (36%), Gaps = 10/125 (8%)
Query: 699 GEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGH--IVYYKLQF 756
G ++ P + P P + S TS+ ++W P NG I +++++
Sbjct: 1 GSSGSSGSQPDHGRLSPPE-APDRPTISTASETSVYVTWIPR----GNGGFPIQSFRVEY 55
Query: 757 VETGRSDS--EASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYP-ITIRTHE 813
+ + A+ ++ S + L+K Y+ V A +G+ S P
Sbjct: 56 KKLKKVGDWILATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVSG 115
Query: 814 DDPSE 818
PS
Sbjct: 116 SGPSS 120
Score = 60.5 bits (147), Expect = 3e-11
Identities = 24/123 (19%), Positives = 42/123 (34%), Gaps = 9/123 (7%)
Query: 464 GEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKV-YYTQD 522
G ++ P + P AP + S +++ + W I ++V Y
Sbjct: 1 GSSGSSGSQPDHGRLSPPE-APDRPTISTASETSVYVTWIPRGNGGFPIQSFRVEYKKLK 59
Query: 523 QSLPMSAWET--QVVDNNQLT-TISDLTPHTIYTIRVQAFTSVGPGPLSAPV-LVKTQQG 578
+ W + ++L+ I+ L Y RV+A +G SAP
Sbjct: 60 KV---GDWILATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVSGS 116
Query: 579 VPS 581
PS
Sbjct: 117 GPS 119
Score = 40.8 bits (96), Expect = 2e-04
Identities = 11/51 (21%), Positives = 16/51 (31%)
Query: 563 GPGPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLAWSKPTHSGENIISY 613
G S + P P ET+V + W + G I S+
Sbjct: 1 GSSGSSGSQPDHGRLSPPEAPDRPTISTASETSVYVTWIPRGNGGFPIQSF 51
Score = 35.8 bits (83), Expect = 0.014
Identities = 20/99 (20%), Positives = 31/99 (31%), Gaps = 7/99 (7%)
Query: 624 PRDLRAVDIQETAVTLAWSKPTHSGENIISY-----ELYWNDTYAKAKHHRRIGLVETYS 678
P ET+V + W + G I S+ +L + A +
Sbjct: 21 PDRPTISTASETSVYVTWIPRGNGGFPIQSFRVEYKKLKKVGDWILATSAIPPS-RLSVE 79
Query: 679 LTGLYPNTLYYIWLAAQSPRGEGATTPP-IPVRTKQYVP 716
+TGL Y + A + GE + P P P
Sbjct: 80 ITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVSGSGP 118
Score = 33.9 bits (78), Expect = 0.050
Identities = 20/123 (16%), Positives = 34/123 (27%), Gaps = 20/123 (16%)
Query: 277 GRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWD-----------------EPE 319
G S + P AP + S +++ + W + +
Sbjct: 1 GSSGSSGSQPDHGRLSPPE-APDRPTISTASETSVYVTWIPRGNGGFPIQSFRVEYKKLK 59
Query: 320 TPNGQITAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPP-IPVRTKQYGK 378
I A + +TGL Y + A + GE + P P G
Sbjct: 60 KVGDWILATSAIPPS-RLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVSGSGP 118
Query: 379 TPG 381
+ G
Sbjct: 119 SSG 121
Score = 33.9 bits (78), Expect = 0.054
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 849 DVSDGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKP-ETIKTPGGVP 897
L + +TGL+ Y +V AL G+ + S P G P
Sbjct: 69 SAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVSGSGP 118
>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 80.2 bits (198), Expect = 2e-18
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 1/97 (1%)
Query: 199 TLPVAPLDVKISEVTATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEISGIITTYYTVR 258
+ AP D++ EVT + L WT P Y++ + T + G IT++ +
Sbjct: 6 SGLEAPRDLEAKEVTPRTALLTWTEPPVRPAGYLLSFHTPGGQTQEILLPGGITSH-QLL 64
Query: 259 NLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPG 295
L P T Y + A+ PP S + T G G
Sbjct: 65 GLFPSTSYNARLQAMWGQSLLPPVSTSFTTGGLRISG 101
Score = 55.9 bits (135), Expect = 7e-10
Identities = 18/86 (20%), Positives = 29/86 (33%), Gaps = 7/86 (8%)
Query: 719 PPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFV 778
P+++ + ++ + ++W PPV Y L F G E + TS
Sbjct: 10 APRDLEAKEVTPRTALLTWTEPPVR-----PAGYLLSFHTPGGQTQEILLPG--GITSHQ 62
Query: 779 LDELKKWTEYRIWVLAGTSIGDGPSS 804
L L T Y + A P
Sbjct: 63 LLGLFPSTSYNARLQAMWGQSLLPPV 88
Score = 55.9 bits (135), Expect = 9e-10
Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 9/103 (8%)
Query: 484 APRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLT-T 542
APRD++ + ++ T ++ W EP + GY + + + ++ +
Sbjct: 10 APRDLEAKEVTPRTALLTWTEP---PVRPAGYLLSFHTPGG----QTQEILLPGGITSHQ 62
Query: 543 ISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPSQPRD 585
+ L P T Y R+QA P T S P
Sbjct: 63 LLGLFPSTSYNARLQAMWGQSLLP-PVSTSFTTGGLRISGPSS 104
Score = 49.4 bits (118), Expect = 1e-07
Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 5/99 (5%)
Query: 624 PRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVETYSLTGLY 683
PRDL A ++ L W++P Y L ++ + + G + ++ L GL+
Sbjct: 11 PRDLEAKEVTPRTALLTWTEPP---VRPAGYLLSFHTPGGQTQEILLPGGITSHQLLGLF 67
Query: 684 PNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQN 722
P+T Y L A + + P +
Sbjct: 68 PSTSYNARLQAMWGQSLLPPVSTSFTTGGLRIS--GPSS 104
Score = 39.7 bits (93), Expect = 4e-04
Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 14/88 (15%)
Query: 288 TTGETEPGTAPRDVQVRPLSSSTMVIQWDEP-----------ETPNGQITAKHHRRIGLV 336
++G + APRD++ + ++ T ++ W EP TP G + G +
Sbjct: 2 SSGSSGLE-APRDLEAKEVTPRTALLTWTEPPVRPAGYLLSFHTPGG--QTQEILLPGGI 58
Query: 337 ETYSLTGLYPNTLYYIWLAAQSPRGEGA 364
++ L GL+P+T Y L A +
Sbjct: 59 TSHQLLGLFPSTSYNARLQAMWGQSLLP 86
Score = 30.5 bits (69), Expect = 0.66
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 852 DGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKTPGGVPNRP 900
GG + GL P T Y ++ A+ + + T G + P
Sbjct: 55 PGGITSHQLLGLFPSTSYNARLQAMWGQSLLPPV-STSFTTGGLRISGP 102
Score = 27.8 bits (62), Expect = 5.7
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 398 TYSLTGLYPNTLYYIWLAAQSPRGEGA 424
++ L GL+P+T Y L A +
Sbjct: 60 SHQLLGLFPSTSYNARLQAMWGQSLLP 86
>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1,
NCAM-120, CD56 antigen, membra protein, glycoprotein,
structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo
sapiens}
Length = 122
Score = 81.0 bits (200), Expect = 2e-18
Identities = 35/122 (28%), Positives = 48/122 (39%), Gaps = 13/122 (10%)
Query: 467 ATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPNG-QITGYKVYYTQDQSL 525
++ P +P QV P SST +Q+DEPE G I YK +
Sbjct: 1 GSSGSSG-------PS-SPSIDQVEP-YSSTAQVQFDEPEATGGVPILKYKAEWRAVGEE 51
Query: 526 PMSAWETQVVDNNQLT--TISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQ-QGVPSQ 582
+ + + TI L P T Y +R+ A G G +SA KTQ PS
Sbjct: 52 VWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSA 111
Query: 583 PR 584
P+
Sbjct: 112 PK 113
Score = 74.0 bits (182), Expect = 5e-16
Identities = 21/109 (19%), Positives = 42/109 (38%), Gaps = 9/109 (8%)
Query: 199 TLPVAPLDVKISEVTATSVRLDWTYPSET----LLYYVIQYKPKAANT----PYSEISGI 250
+ P +P + E +++ ++ + P T +L Y +++ Y
Sbjct: 6 SGPSSP-SIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEAS 64
Query: 251 ITTYYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPR 299
+ T+ L P T Y + A+N G G S+ + T +AP+
Sbjct: 65 MEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPK 113
Score = 60.9 bits (148), Expect = 2e-11
Identities = 21/111 (18%), Positives = 39/111 (35%), Gaps = 10/111 (9%)
Query: 711 TKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGH--IVYYKLQFVETGRSDSEASI 768
+ P +P EP S++ ++ ++ P + G I+ YK ++ G +
Sbjct: 3 SGSSGPSSP-SIDQVEP-YSSTAQVQFDEP---EATGGVPILKYKAEWRAVGEEVWHSKW 57
Query: 769 VTLK---NQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDP 816
K + + LK T Y + + A G G S +T
Sbjct: 58 YDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVRE 108
Score = 49.0 bits (117), Expect = 3e-07
Identities = 28/104 (26%), Positives = 42/104 (40%), Gaps = 20/104 (19%)
Query: 288 TTGETEPGTAPRDVQVRPLSSSTMVIQWDEPETPNG-QIT-----------AKHHRRIGL 335
++G + P +P QV P SST +Q+DEPE G I H +
Sbjct: 2 SSGSSGPS-SPSIDQVEP-YSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYD 59
Query: 336 V------ETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRT 373
++ GL P T Y + LAA + +G G + +T
Sbjct: 60 AKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKT 103
Score = 48.6 bits (116), Expect = 5e-07
Identities = 20/102 (19%), Positives = 41/102 (40%), Gaps = 6/102 (5%)
Query: 626 DLRAVDIQETAVTLAWSKPTHSG-ENIISYELYWNDTYAKAKHHRRIGLVE-----TYSL 679
+ V+ + + + +P +G I+ Y+ W + H + E ++
Sbjct: 12 SIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTI 71
Query: 680 TGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQ 721
GL P T Y + LAA + +G G + +T+ + P+
Sbjct: 72 VGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPK 113
Score = 42.8 bits (101), Expect = 4e-05
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 860 VTGLQPDTIYTIQVAALTRKGDGDRSKPETIKT-PGGVPNRPHVN 903
+ GL+P+T Y +++AAL KG G+ S KT P P+ P +
Sbjct: 71 IVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKLE 115
Score = 31.7 bits (72), Expect = 0.31
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 447 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPR 486
L P T Y + LAA + +G G + +T+ +AP+
Sbjct: 74 LKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPK 113
Score = 28.6 bits (64), Expect = 4.4
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 31 TEPGTAPRDVQVRPLSSSTMVIQWDEPETPNG-QITH 66
+ P +P QV P SST +Q+DEPE G I
Sbjct: 6 SGPS-SPSIDQVEP-YSSTAQVQFDEPEATGGVPILK 40
>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 115
Score = 80.2 bits (198), Expect = 3e-18
Identities = 25/112 (22%), Positives = 42/112 (37%), Gaps = 6/112 (5%)
Query: 199 TLPVAPLDVKISEVTATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEISGIITTYYTVR 258
+ P P ++ +T L W P + Y IQ A +E G Y +
Sbjct: 6 SGPDGPTQLRALNLTEGFAVLHWKPPQNPVDTYDIQVTAPGAPPLQAETPG-SAVDYPLH 64
Query: 259 NLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLSSST 310
+L +T Y + + P+S T E APRD++ + ++ S
Sbjct: 65 DLVLHTNYTATVRGLRGPNLTSPASITFTTGLE-----APRDLEAKEVTPSG 111
Score = 67.5 bits (165), Expect = 1e-13
Identities = 24/134 (17%), Positives = 43/134 (32%), Gaps = 21/134 (15%)
Query: 464 GEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQ 523
G ++ P P ++ L+ V+ W P + Y + T
Sbjct: 1 GSSGSSGP-----------DGPTQLRALNLTEGFAVLHWKPP---QNPVDTYDIQVTAPG 46
Query: 524 SLPMSAWETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPSQP 583
+ P + + + + DL HT YT V+ A + T P
Sbjct: 47 APP---LQAETPGSAVDYPLHDLVLHTNYTATVRGLRGPNLTS-PASITFTT---GLEAP 99
Query: 584 RDLRAVDIQETAVT 597
RDL A ++ + +
Sbjct: 100 RDLEAKEVTPSGPS 113
Score = 55.1 bits (133), Expect = 2e-09
Identities = 19/110 (17%), Positives = 36/110 (32%), Gaps = 8/110 (7%)
Query: 624 PRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVETYSLTGLY 683
P LRA+++ E L W P + +Y++ A G Y L L
Sbjct: 11 PTQLRALNLTEGFAVLHWKPPQ---NPVDTYDIQVTAPGAPPLQAETPGSAVDYPLHDLV 67
Query: 684 PNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSI 733
+T Y + + I T P+++ + ++ +
Sbjct: 68 LHTNYTATVRGLRGPNLTSPA-SITFTT----GLEAPRDLEAKEVTPSGP 112
Score = 54.4 bits (131), Expect = 3e-09
Identities = 17/105 (16%), Positives = 29/105 (27%), Gaps = 8/105 (7%)
Query: 719 PPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFV 778
P + L+ + W+PP I T T + +
Sbjct: 10 GPTQLRALNLTEGFAVLHWKPPQNPVDTYDIQV-------TAPGAPPLQAETPGSAVDYP 62
Query: 779 LDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDPSEVCPTQ 823
L +L T Y V + IT T + P ++ +
Sbjct: 63 LHDLVLHTNYTATVRGLRGPNLTSPA-SITFTTGLEAPRDLEAKE 106
Score = 40.1 bits (94), Expect = 4e-04
Identities = 17/100 (17%), Positives = 27/100 (27%), Gaps = 16/100 (16%)
Query: 288 TTGETEPGTAPRDVQVRPLSSSTMVIQWDEPETP---------NGQITAKHHRRIGLVET 338
++G + P P ++ L+ V+ W P+ P G
Sbjct: 2 SSGSSGP-DGPTQLRALNLTEGFAVLHWKPPQNPVDTYDIQVTAPGAPPLQAETPGSAVD 60
Query: 339 YSLTGLYPNTLYYIWLAAQSPRGEG------ATTPPIPVR 372
Y L L +T Y + TT R
Sbjct: 61 YPLHDLVLHTNYTATVRGLRGPNLTSPASITFTTGLEAPR 100
Score = 33.2 bits (76), Expect = 0.082
Identities = 11/46 (23%), Positives = 15/46 (32%), Gaps = 1/46 (2%)
Query: 852 DGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKTPGGVP 897
G A++ + L T YT V L + T T P
Sbjct: 55 PGSAVDYPLHDLVLHTNYTATVRGLRGPNLTSPA-SITFTTGLEAP 99
>3k2m_C Monobody HA4; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding, phosphoprotein;
1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A
1fna_A
Length = 101
Score = 79.8 bits (197), Expect = 3e-18
Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 5/96 (5%)
Query: 718 APPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSF 777
+ P + + TS+ ISW+ P S+ + YY++ + ETG + + ++
Sbjct: 6 SVPTKLEVVAATPTSLLISWDAPM---SSSSVYYYRITYGETGGNSPVQEFTVPYSSSTA 62
Query: 778 VLDELKKWTEYRIWVLAGTSIGDGPS--SYPITIRT 811
+ L +Y I V A G PI+I
Sbjct: 63 TISGLSPGVDYTITVYAWGEDSAGYMFMYSPISINY 98
Score = 77.1 bits (190), Expect = 3e-17
Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 3/94 (3%)
Query: 199 TLPVAPLDVKISEVTATSVRLDWTYPSE--TLLYYVIQYKPKAANTPYSEIS-GIITTYY 255
++ P +++ T TS+ + W P ++ YY I Y N+P E + ++
Sbjct: 3 SVSSVPTKLEVVAATPTSLLISWDAPMSSSSVYYYRITYGETGGNSPVQEFTVPYSSSTA 62
Query: 256 TVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITT 289
T+ LSP +Y + A G + I+
Sbjct: 63 TISGLSPGVDYTITVYAWGEDSAGYMFMYSPISI 96
Score = 69.0 bits (169), Expect = 2e-14
Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Query: 484 APRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLT-T 542
P ++V + ++++I WD P + + Y++ Y + S + V + T T
Sbjct: 7 VPTKLEVVAATPTSLLISWDAPM-SSSSVYYYRITYGETGG--NSPVQEFTVPYSSSTAT 63
Query: 543 ISDLTPHTIYTIRVQAFTSVGPGP--LSAPVLVKT 575
IS L+P YTI V A+ G + +P+ +
Sbjct: 64 ISGLSPGVDYTITVYAWGEDSAGYMFMYSPISINY 98
Score = 54.4 bits (131), Expect = 3e-09
Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 3/91 (3%)
Query: 624 PRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRI--GLVETYSLTG 681
P L V T++ ++W P S ++ Y + + +T + T +++G
Sbjct: 8 PTKLEVVAATPTSLLISWDAPMSSS-SVYYYRITYGETGGNSPVQEFTVPYSSSTATISG 66
Query: 682 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTK 712
L P Y I + A G P+
Sbjct: 67 LSPGVDYTITVYAWGEDSAGYMFMYSPISIN 97
Score = 50.9 bits (122), Expect = 5e-08
Identities = 17/98 (17%), Positives = 32/98 (32%), Gaps = 14/98 (14%)
Query: 290 GETEPGTAPRDVQVRPLSSSTMVIQWDEPETP-------------NGQITAKHHRRIGLV 336
G + P ++V + ++++I WD P + G +
Sbjct: 1 GSSVSS-VPTKLEVVAATPTSLLISWDAPMSSSSVYYYRITYGETGGNSPVQEFTVPYSS 59
Query: 337 ETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTK 374
T +++GL P Y I + A G P+
Sbjct: 60 STATISGLSPGVDYTITVYAWGEDSAGYMFMYSPISIN 97
Score = 37.4 bits (87), Expect = 0.002
Identities = 12/48 (25%), Positives = 17/48 (35%)
Query: 843 NDPMRFDVSDGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETI 890
N P++ + ++GL P YTI V A G I
Sbjct: 47 NSPVQEFTVPYSSSTATISGLSPGVDYTITVYAWGEDSAGYMFMYSPI 94
Score = 30.1 bits (68), Expect = 0.89
Identities = 6/36 (16%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 31 TEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITH 66
+ P ++V + ++++I WD P + + +
Sbjct: 3 SVSS-VPTKLEVVAATPTSLLISWDAPM-SSSSVYY 36
Score = 28.6 bits (64), Expect = 3.0
Identities = 7/31 (22%), Positives = 9/31 (29%)
Query: 447 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTK 477
L P Y I + A G P+
Sbjct: 67 LSPGVDYTITVYAWGEDSAGYMFMYSPISIN 97
>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type
III domain containing protein, cytoskeleton, muscle
contraction; NMR {Mus musculus} SCOP: b.1.2.1
Length = 111
Score = 80.1 bits (198), Expect = 4e-18
Identities = 22/103 (21%), Positives = 43/103 (41%), Gaps = 6/103 (5%)
Query: 201 PVAPLDVKISEVTATSVRLDWTYPSET----LLYYVIQYKPKAANTPYSEISGII-TTYY 255
AP + + +VT T+ L W P + Y+++Y + + + +
Sbjct: 9 TSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGF 68
Query: 256 TVRNLSPYTEYEFYIIAVNNLGRGPPSSP-AVITTGETEPGTA 297
TV++L F ++ VN GR P++ +T E+ P +
Sbjct: 69 TVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIRESGPSSG 111
Score = 56.6 bits (137), Expect = 5e-10
Identities = 19/108 (17%), Positives = 38/108 (35%), Gaps = 8/108 (7%)
Query: 715 VPGAP--PQNVSCEPLSSTSIRISWEPPPVERSNGH--IVYYKLQFVETGRSDSEASIVT 770
G PQ+++ E ++ T+ + W PP G I Y +++ G + +
Sbjct: 5 SSGPTSAPQHLTVEDVTDTTTTLKWRPP---DRIGAGGIDGYLVEYCLEGSEEWVPANKE 61
Query: 771 LKNQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPI-TIRTHEDDPS 817
+ F + +L V+ G + + + E PS
Sbjct: 62 PVERCGFTVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIRESGPS 109
Score = 56.6 bits (137), Expect = 6e-10
Identities = 22/97 (22%), Positives = 36/97 (37%), Gaps = 9/97 (9%)
Query: 484 APRDVQVRPLSSSTMVIQWDEPETPNG-QITGYKVYYTQDQSLPMSAWETQVVDNNQLT- 541
AP+ + V ++ +T ++W P+ I GY V Y + S W + +
Sbjct: 11 APQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGS---EEWVPANKEPVERCG 67
Query: 542 -TISDLTPHTIYTIRVQAFTSVGPGP---LSAPVLVK 574
T+ DL RV G L PV ++
Sbjct: 68 FTVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIR 104
Score = 42.3 bits (100), Expect = 6e-05
Identities = 17/101 (16%), Positives = 31/101 (30%), Gaps = 6/101 (5%)
Query: 624 PRDLRAVDIQETAVTLAWSKPTHSG-ENIISY--ELYWNDTYAKAKHHRRIGLVETYSLT 680
P+ L D+ +T TL W P G I Y E + ++ +++
Sbjct: 12 PQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGFTVK 71
Query: 681 GLYPNTLYYIWLAAQSPRGEGATTPPI-PVRTKQYVPGAPP 720
L + + G + PV ++ G
Sbjct: 72 DLPTGARILFRVVGVNIAGRSEPATLLQPVTIRE--SGPSS 110
Score = 37.7 bits (88), Expect = 0.002
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 578 GVPSQPRDLRAVDIQETAVTLAWSKPTHSG-ENIISY 613
G S P+ L D+ +T TL W P G I Y
Sbjct: 7 GPTSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGY 43
Score = 37.3 bits (87), Expect = 0.003
Identities = 15/110 (13%), Positives = 38/110 (34%), Gaps = 16/110 (14%)
Query: 288 TTGETEPGTAPRDVQVRPLSSSTMVIQWDEPETPNG-QITA--------------KHHRR 332
++G + P +AP+ + V ++ +T ++W P+ I ++
Sbjct: 2 SSGSSGPTSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKE 61
Query: 333 IGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPI-PVRTKQYGKTPG 381
+++ L + + G + PV ++ G + G
Sbjct: 62 PVERCGFTVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIRESGPSSG 111
Score = 30.0 bits (68), Expect = 1.1
Identities = 5/44 (11%), Positives = 11/44 (25%), Gaps = 1/44 (2%)
Query: 855 ALELNVTGLQPDTIYTIQVAALTRKGDGDRSKP-ETIKTPGGVP 897
V L +V + G + + + + P
Sbjct: 65 RCGFTVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIRESGP 108
>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine
6 R beta subunit, signaling protein; 2.00A {Homo
sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A
Length = 215
Score = 83.1 bits (205), Expect = 4e-18
Identities = 36/205 (17%), Positives = 71/205 (34%), Gaps = 11/205 (5%)
Query: 622 AKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELY--WNDTYAKAKHHRRIGLVETYSL 679
KP++L + + + W + ++ L W +R
Sbjct: 9 EKPKNLSCIVNEGKKMRCEWDGGRETHL-ETNFTLKSEWATHKFADCKAKRDTPTSCTVD 67
Query: 680 TGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQ-NVSCEPLSSTSIRISWE 738
+W+ A++ G+ + + P P +V S+ ++++W
Sbjct: 68 YSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWT 127
Query: 739 PPPVERSNGHIVYYKLQFVETGRSDSEASIV--TLKNQTSFVLDELKKWTEYRIWVLAGT 796
P + I+ Y +Q+ S T ++SF + +LK +TEY +
Sbjct: 128 NPS--IKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMK 185
Query: 797 SIGDG---PSSYPITIRTHEDDPSE 818
G G S + T+ED PS+
Sbjct: 186 EDGKGYWSDWSEEASGITYEDRPSK 210
Score = 72.7 bits (178), Expect = 1e-14
Identities = 27/146 (18%), Positives = 51/146 (34%), Gaps = 7/146 (4%)
Query: 447 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLS--SSTMVIQWDE 504
+W+ A++ G+ + + +P P ++ V SS + + W
Sbjct: 70 TVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPN-PPHNLSVINSEELSSILKLTWTN 128
Query: 505 PETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLT-TISDLTPHTIYTIRVQAFTSVG 563
P + I Y + Y + S + + + + T+ DL P T Y R++ G
Sbjct: 129 PSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDG 188
Query: 564 PGPLSA---PVLVKTQQGVPSQPRDL 586
G S T + PS+
Sbjct: 189 KGYWSDWSEEASGITYEDRPSKEPSF 214
Score = 71.9 bits (176), Expect = 3e-14
Identities = 29/245 (11%), Positives = 66/245 (26%), Gaps = 44/245 (17%)
Query: 481 PGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQL 540
P P+++ M +W + T + + + + +
Sbjct: 7 PPEKPKNLSCIVNEGKKMRCEW-DGGRETHLETNFTLKSEWATH-KFADCKAKRDTPTSC 64
Query: 541 TTISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPSQPRDLRAVDIQETA--VTL 598
T + V+A ++G + P+ P +L ++ +E + + L
Sbjct: 65 TVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKL 124
Query: 599 AWSKPTHSGENIISYELYWNDTYAKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYW 658
W+ P+ I+ Y + Y
Sbjct: 125 TWTNPSIKSVIILKYNIQ-------------------------------------YRTKD 147
Query: 659 NDTYAKAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGA---TTPPIPVRTKQYV 715
T+++ ++++ L P T Y + G+G + T +
Sbjct: 148 ASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDR 207
Query: 716 PGAPP 720
P P
Sbjct: 208 PSKEP 212
Score = 68.1 bits (166), Expect = 5e-13
Identities = 28/199 (14%), Positives = 57/199 (28%), Gaps = 25/199 (12%)
Query: 201 PVAPLDVKISEVTATSVRLDWTYPSETLLY--YVIQYK-PKAANTPYSEISGIITTYYTV 257
P P ++ +R +W ET L + ++ + T+
Sbjct: 8 PEKPKNLSCIVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVD 67
Query: 258 RNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLS--SSTMVIQW 315
+ + E ++ A N LG+ + +P P ++ V SS + + W
Sbjct: 68 YSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPN-PPHNLSVINSEELSSILKLTW 126
Query: 316 DEPETPNGQI----------------TAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSP 359
P + I ++++ L P T Y +
Sbjct: 127 TNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKE 186
Query: 360 RGEGA---TTPPIPVRTKQ 375
G+G + T +
Sbjct: 187 DGKGYWSDWSEEASGITYE 205
Score = 66.9 bits (163), Expect = 1e-12
Identities = 30/210 (14%), Positives = 60/210 (28%), Gaps = 28/210 (13%)
Query: 715 VPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQ 774
+P P+N+SC +R W+ R + L+ ++
Sbjct: 6 LPPEKPKNLSCIVNEGKKMRCEWDGG---RETHLETNFTLKSEWATHKFADCKAKRDTPT 62
Query: 775 TSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHE----DDPSEVCPTQNDFRK-- 828
+ V + +WV A ++G +S I + P + ++
Sbjct: 63 SCTVDYSTVYFVNIEVWVEAENALGKV-TSDHINFDPVYKVKPNPPHNLSVINSEELSSI 121
Query: 829 -----NKKTNGSNFKGGY------LNDPMRFDVS----DGGALELNVTGLQPDTIYTIQV 873
+ S Y + + V L+P T Y ++
Sbjct: 122 LKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRI 181
Query: 874 AALTRKGDG---DRSKPETIKTPGGVPNRP 900
+ G G D S+ + T P++
Sbjct: 182 RCMKEDGKGYWSDWSEEASGITYEDRPSKE 211
Score = 58.8 bits (142), Expect = 8e-10
Identities = 35/107 (32%), Positives = 49/107 (45%), Gaps = 9/107 (8%)
Query: 201 PVAPLDVKISEVTATSVRLDWTYPSETL---LYYVIQYKPKAA---NTPYSEISGIITTY 254
P L V SE ++ ++L WT PS L Y IQY+ K A + E + +
Sbjct: 106 PPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSS 165
Query: 255 YTVRNLSPYTEYEFYIIAVNNLGRG---PPSSPAVITTGETEPGTAP 298
+TV++L P+TEY F I + G+G S A T E P P
Sbjct: 166 FTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKEP 212
Score = 31.9 bits (72), Expect = 0.60
Identities = 30/212 (14%), Positives = 51/212 (24%), Gaps = 26/212 (12%)
Query: 294 PGTAPRDVQVRPLSSSTMVIQWDEP-------------ETPNGQITAKHHRRIGLVETYS 340
P P+++ M +WD E + +R
Sbjct: 7 PPEKPKNLSCIVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTV 66
Query: 341 LTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYGKT-PGFGEQAAKHHRRIGLVE-- 397
+W+ A++ G+ T+ I K P +++
Sbjct: 67 DYSTVYFVNIEVWVEAENALGKV-TSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLT 125
Query: 398 -TYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYGKTPGFGEQALYPNTLYYIW 456
T Y I + + P T F Q L P T Y
Sbjct: 126 WTNPSIKSVIILKYNIQY---RTKDASTWSQIPPEDTA--STRSSFTVQDLKPFTEYVFR 180
Query: 457 LAAQSPRGEGA---TTPPIPVRTKQYEPGTAP 485
+ G+G + T + P P
Sbjct: 181 IRCMKEDGKGYWSDWSEEASGITYEDRPSKEP 212
>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.2.1
Length = 107
Score = 79.8 bits (197), Expect = 4e-18
Identities = 21/119 (17%), Positives = 44/119 (36%), Gaps = 15/119 (12%)
Query: 466 GATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSL 525
G++ P P + + + +T ++QW P+ G++ GY++ Y +
Sbjct: 1 GSSGSSGP---------GRPT-MMISTTAMNTALLQWHPPKELPGELLGYRLQYCRADE- 49
Query: 526 PMSAWETQVVDNNQLT-TISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPSQP 583
+ T + T++ L T Y R+ A G G ++T + +
Sbjct: 50 --ARPNTIDFGKDDQHFTVTGLHKGTTYIFRLAAKNRAGLGEEFEKE-IRTPEDLSGPS 105
Score = 74.7 bits (184), Expect = 2e-16
Identities = 26/92 (28%), Positives = 34/92 (36%), Gaps = 4/92 (4%)
Query: 201 PVAPLDVKISEVTATSVRLDWTYPSET---LLYYVIQYKPKAANTPYSEISGIITTYYTV 257
P P + IS + L W P E LL Y +QY P + G ++TV
Sbjct: 8 PGRP-TMMISTTAMNTALLQWHPPKELPGELLGYRLQYCRADEARPNTIDFGKDDQHFTV 66
Query: 258 RNLSPYTEYEFYIIAVNNLGRGPPSSPAVITT 289
L T Y F + A N G G + T
Sbjct: 67 TGLHKGTTYIFRLAAKNRAGLGEEFEKEIRTP 98
Score = 72.1 bits (177), Expect = 2e-15
Identities = 26/107 (24%), Positives = 40/107 (37%), Gaps = 6/107 (5%)
Query: 711 TKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVT 770
+ PG P +S + + + W PP + G ++ Y+LQ+ +I
Sbjct: 3 SGSSGPGRPTMMIS--TTAMNTALLQWHPP--KELPGELLGYRLQYCRAD-EARPNTIDF 57
Query: 771 LKNQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDPS 817
K+ F + L K T Y + A G G IRT ED
Sbjct: 58 GKDDQHFTVTGLHKGTTYIFRLAAKNRAGLGEEF-EKEIRTPEDLSG 103
Score = 54.7 bits (132), Expect = 2e-09
Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 2/95 (2%)
Query: 626 DLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVET-YSLTGLYP 684
+ L W P ++ Y L + + G + +++TGL+
Sbjct: 12 TMMISTTAMNTALLQWHPPKELPGELLGYRLQYCRADEARPNTIDFGKDDQHFTVTGLHK 71
Query: 685 NTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAP 719
T Y LAA++ G G +RT + + G
Sbjct: 72 GTTYIFRLAAKNRAGLGEEFEKE-IRTPEDLSGPS 105
Score = 47.4 bits (113), Expect = 9e-07
Identities = 20/99 (20%), Positives = 40/99 (40%), Gaps = 15/99 (15%)
Query: 288 TTGETEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITA-------KHHRRIGLVE--- 337
++G + PG P + + + +T ++QW P+ G++ R ++
Sbjct: 2 SSGSSGPG-RPT-MMISTTAMNTALLQWHPPKELPGELLGYRLQYCRADEARPNTIDFGK 59
Query: 338 ---TYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRT 373
+++TGL+ T Y LAA++ G G
Sbjct: 60 DDQHFTVTGLHKGTTYIFRLAAKNRAGLGEEFEKEIRTP 98
Score = 38.9 bits (91), Expect = 8e-04
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 860 VTGLQPDTIYTIQVAALTRKGDGDRSKPETIKTPGGVPNRP 900
VTGL T Y ++AA R G G+ + E I+TP +
Sbjct: 66 VTGLHKGTTYIFRLAAKNRAGLGEEFEKE-IRTPEDLSGPS 105
Score = 30.8 bits (70), Expect = 0.47
Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 26 GYILVTEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITH 66
G + PG P + + + +T ++QW P+ G++
Sbjct: 1 GSSGSSGPG-RPT-MMISTTAMNTALLQWHPPKELPGELLG 39
>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain,
structural genomics., NPPSFA; NMR {Homo sapiens}
Length = 120
Score = 79.7 bits (197), Expect = 5e-18
Identities = 25/103 (24%), Positives = 39/103 (37%), Gaps = 4/103 (3%)
Query: 198 LTLPVAPLDVKISEVTATSVRLDWTYPSET----LLYYVIQYKPKAANTPYSEISGIITT 253
+ P P VKI +V +V L WT P + + Y IQ K + ++ I T
Sbjct: 15 IDRPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTVIEHYHRT 74
Query: 254 YYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGT 296
T+ L EY F + + N G ++ + G
Sbjct: 75 SATITELVIGNEYYFRVFSENMCGLSEDATMTKESAVIARDGK 117
Score = 53.9 bits (130), Expect = 6e-09
Identities = 22/105 (20%), Positives = 41/105 (39%), Gaps = 9/105 (8%)
Query: 481 PGTAPRDVQVRPLSSSTMVIQWDEPETPNGQ-ITGYKVYYTQDQSLPMSAWETQVVDNNQ 539
PG P+ V++ + + + W P+ ITGY + +S W T + ++
Sbjct: 18 PG-PPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKS---MEWFTVIEHYHR 73
Query: 540 LT-TISDLTPHTIYTIRVQAFTSVG---PGPLSAPVLVKTQQGVP 580
+ TI++L Y RV + G ++ V + G
Sbjct: 74 TSATITELVIGNEYYFRVFSENMCGLSEDATMTKESAVIARDGKI 118
Score = 53.1 bits (128), Expect = 1e-08
Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 7/94 (7%)
Query: 715 VPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGH--IVYYKLQFVETGRSDSEASIVTLK 772
PG PPQ V E + ++ ++W PP +G+ I Y +Q + + ++
Sbjct: 17 RPG-PPQIVKIEDVWGENVALTWTPPK---DDGNAAITGYTIQKADKKSMEWFT-VIEHY 71
Query: 773 NQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYP 806
++TS + EL EY V + G +
Sbjct: 72 HRTSATITELVIGNEYYFRVFSENMCGLSEDATM 105
Score = 40.8 bits (96), Expect = 2e-04
Identities = 17/99 (17%), Positives = 33/99 (33%), Gaps = 6/99 (6%)
Query: 624 PRDLRAVDIQETAVTLAWSKPTHSG-ENIISYEL-YWNDTYAKAKHHRRIGLVETYSLTG 681
P+ ++ D+ V L W+ P G I Y + + + + ++T
Sbjct: 21 PQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTVIEHYHRTSATITE 80
Query: 682 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPP 720
L YY + +++ G TK+ A
Sbjct: 81 LVIGNEYYFRVFSENMCGLSEDATM----TKESAVIARD 115
Score = 37.7 bits (88), Expect = 0.003
Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Query: 561 SVGPGPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLAWSKPTHSGENIISY 613
S G S + + P P+ ++ D+ V L W+ P G I+
Sbjct: 2 SSGSSGASIDIQI---IDRPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITG 51
Score = 29.6 bits (67), Expect = 1.9
Identities = 5/42 (11%), Positives = 12/42 (28%)
Query: 860 VTGLQPDTIYTIQVAALTRKGDGDRSKPETIKTPGGVPNRPH 901
+T L Y +V + G + + + +
Sbjct: 78 ITELVIGNEYYFRVFSENMCGLSEDATMTKESAVIARDGKIY 119
Score = 29.3 bits (66), Expect = 2.3
Identities = 15/98 (15%), Positives = 30/98 (30%), Gaps = 18/98 (18%)
Query: 294 PGTAPRDVQVRPLSSSTMVIQWDEPETPNGQ-ITA-------------KHHRRIGLVETY 339
PG P+ V++ + + + W P+ IT +
Sbjct: 18 PG-PPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTVIEHYHRTSA 76
Query: 340 SLTGLYPNTLYYIWLAAQSPRGEG---ATTPPIPVRTK 374
++T L YY + +++ G T V +
Sbjct: 77 TITELVIGNEYYFRVFSENMCGLSEDATMTKESAVIAR 114
>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW-
type protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 110
Score = 79.3 bits (196), Expect = 5e-18
Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 6/105 (5%)
Query: 199 TLPVAPLDVKISEVTATSVRLDWTYPSET----LLYYVIQYKPKAANT-PYSEISGIITT 253
+ P + + VT T+V + W P L YV++Y + + I T
Sbjct: 6 SGTSPPTLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDKT 65
Query: 254 YYTVRNLSPYTEYEFYIIAVNNLGRGPPSSP-AVITTGETEPGTA 297
+T+ L + + AVN G P I E+ P +
Sbjct: 66 KFTITGLPTDAKIFVRVKAVNAAGASEPKYYSQPILVKESGPSSG 110
Score = 58.5 bits (142), Expect = 1e-10
Identities = 23/110 (20%), Positives = 43/110 (39%), Gaps = 6/110 (5%)
Query: 711 TKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGH--IVYYKLQFVETGRSDSEASI 768
+ +PP ++ + ++ T++ + W PP G + Y L++ G D +
Sbjct: 2 SSGSSGTSPPTLLTVDSVTDTTVTMRWRPPD---HIGAAGLDGYVLEYCFEGTEDWIVAN 58
Query: 769 VTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPI-TIRTHEDDPS 817
L ++T F + L + + V A + G Y I E PS
Sbjct: 59 KDLIDKTKFTITGLPTDAKIFVRVKAVNAAGASEPKYYSQPILVKESGPS 108
Score = 57.7 bits (140), Expect = 2e-10
Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 9/105 (8%)
Query: 476 TKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPNG-QITGYKVYYTQDQSLPMSAWETQV 534
+ + P + V ++ +T+ ++W P+ + GY + Y + + W
Sbjct: 2 SSGSSGTSPPTLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGT---EDWIVAN 58
Query: 535 VDNNQLT--TISDLTPHTIYTIRVQAFTSVGPGP---LSAPVLVK 574
D T TI+ L +RV+A + G S P+LVK
Sbjct: 59 KDLIDKTKFTITGLPTDAKIFVRVKAVNAAGASEPKYYSQPILVK 103
Score = 43.1 bits (102), Expect = 3e-05
Identities = 20/101 (19%), Positives = 38/101 (37%), Gaps = 6/101 (5%)
Query: 624 PRDLRAVDIQETAVTLAWSKPTHSG-ENIISY--ELYWNDTYAKAKHHRRIGLVETYSLT 680
P L + +T VT+ W P H G + Y E + T ++ + +++T
Sbjct: 11 PTLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDKTKFTIT 70
Query: 681 GLYPNTLYYIWLAAQSPRGEGA-TTPPIPVRTKQYVPGAPP 720
GL + ++ + A + G P+ K+ G
Sbjct: 71 GLPTDAKIFVRVKAVNAAGASEPKYYSQPILVKE--SGPSS 109
Score = 39.6 bits (93), Expect = 4e-04
Identities = 15/110 (13%), Positives = 41/110 (37%), Gaps = 17/110 (15%)
Query: 288 TTGETEPGTAPRDVQVRPLSSSTMVIQWDEPETPNG-QITA--------------KHHRR 332
++G + P + V ++ +T+ ++W P+ + ++
Sbjct: 2 SSGSSGTS-PPTLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKD 60
Query: 333 IGLVETYSLTGLYPNTLYYIWLAAQSPRGEGA-TTPPIPVRTKQYGKTPG 381
+ +++TGL + ++ + A + G P+ K+ G + G
Sbjct: 61 LIDKTKFTITGLPTDAKIFVRVKAVNAAGASEPKYYSQPILVKESGPSSG 110
Score = 35.0 bits (81), Expect = 0.016
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 574 KTQQGVPSQPRDLRAVDIQETAVTLAWSKPTHSG-ENIISY 613
+ S P L + +T VT+ W P H G + Y
Sbjct: 2 SSGSSGTSPPTLLTVDSVTDTTVTMRWRPPDHIGAAGLDGY 42
Score = 29.6 bits (67), Expect = 1.4
Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 855 ALELNVTGLQPDTIYTIQVAALTRKGDGDRSKP-ETIKTPGGVP 897
+ +TGL D ++V A+ G + + I P
Sbjct: 64 KTKFTITGLPTDAKIFVRVKAVNAAGASEPKYYSQPILVKESGP 107
>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 94
Score = 77.1 bits (190), Expect = 2e-17
Identities = 14/88 (15%), Positives = 31/88 (35%), Gaps = 1/88 (1%)
Query: 203 APLDVKISEVTATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEIS-GIITTYYTVRNLS 261
P + ++V S+++ W P + Y + Y + ++ L
Sbjct: 4 RPKGLAFTDVDVDSIKIAWESPQGQVSRYRVTYSSPEDGIHELFPAPDGEEDTAELQGLR 63
Query: 262 PYTEYEFYIIAVNNLGRGPPSSPAVITT 289
P +EY ++A+++ P T
Sbjct: 64 PGSEYTVSVVALHDDMESQPLIGTQSTA 91
Score = 60.9 bits (148), Expect = 1e-11
Identities = 18/98 (18%), Positives = 39/98 (39%), Gaps = 7/98 (7%)
Query: 484 APRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLTTI 543
P+ + + ++ I W+ P GQ++ Y+V Y+ + + + + +
Sbjct: 4 RPKGLAFTDVDVDSIKIAWESP---QGQVSRYRVTYSSPEDGIHELFPAPDGEEDT-AEL 59
Query: 544 SDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPS 581
L P + YT+ V A S P++ +P+
Sbjct: 60 QGLRPGSEYTVSVVALHDDME---SQPLIGTQSTAIPA 94
Score = 58.6 bits (142), Expect = 7e-11
Identities = 20/99 (20%), Positives = 39/99 (39%), Gaps = 8/99 (8%)
Query: 719 PPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFV 778
P+ ++ + SI+I+WE P G + Y++ + E + +
Sbjct: 4 RPKGLAFTDVDVDSIKIAWESP-----QGQVSRYRVTYSSPEDGIHELFPAPDGEEDTAE 58
Query: 779 LDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDPS 817
L L+ +EY + V+A + D S P+ P+
Sbjct: 59 LQGLRPGSEYTVSVVA---LHDDMESQPLIGTQSTAIPA 94
Score = 43.9 bits (104), Expect = 1e-05
Identities = 16/80 (20%), Positives = 29/80 (36%), Gaps = 5/80 (6%)
Query: 624 PRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRI--GLVETYSLTG 681
P+ L D+ ++ +AW P + Y + ++ G +T L G
Sbjct: 5 PKGLAFTDVDVDSIKIAWESPQG---QVSRYRVTYSSPEDGIHELFPAPDGEEDTAELQG 61
Query: 682 LYPNTLYYIWLAAQSPRGEG 701
L P + Y + + A E
Sbjct: 62 LRPGSEYTVSVVALHDDMES 81
Score = 39.7 bits (93), Expect = 3e-04
Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 11/78 (14%)
Query: 297 APRDVQVRPLSSSTMVIQWDEPE-----------TPNGQITAKHHRRIGLVETYSLTGLY 345
P+ + + ++ I W+ P+ +P I G +T L GL
Sbjct: 4 RPKGLAFTDVDVDSIKIAWESPQGQVSRYRVTYSSPEDGIHELFPAPDGEEDTAELQGLR 63
Query: 346 PNTLYYIWLAAQSPRGEG 363
P + Y + + A E
Sbjct: 64 PGSEYTVSVVALHDDMES 81
Score = 35.5 bits (82), Expect = 0.010
Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
Query: 843 NDPMRFDVSDGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKTPGGVP 897
F DG + GL+P + YT+ V AL S+P +P
Sbjct: 42 GIHELFPAPDGEEDTAELQGLRPGSEYTVSVVALHDDM---ESQPLIGTQSTAIP 93
Score = 27.8 bits (62), Expect = 5.0
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 398 TYSLTGLYPNTLYYIWLAAQSPRGEG 423
T L GL P + Y + + A E
Sbjct: 56 TAELQGLRPGSEYTVSVVALHDDMES 81
>1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 137
Score = 78.1 bits (192), Expect = 3e-17
Identities = 25/112 (22%), Positives = 39/112 (34%), Gaps = 12/112 (10%)
Query: 197 LLTLPVAPLDVKISEVTATSVRLDWTYPSET------------LLYYVIQYKPKAANTPY 244
L + S++ A +V L W+ PS L Y + + Y
Sbjct: 14 FEALLSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDGKY 73
Query: 245 SEISGIITTYYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGT 296
+ T T+ +L P +Y + A N +G PS + TT EP
Sbjct: 74 KSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAEIFTTLSCEPDI 125
Score = 66.5 bits (162), Expect = 4e-13
Identities = 28/159 (17%), Positives = 41/159 (25%), Gaps = 33/159 (20%)
Query: 563 GPGPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYA 622
G S K + + S A DIQ V L WS P+
Sbjct: 1 GSSGSSGDEETKAFEALLSNIVKPVASDIQARTVVLTWSPPSSLINGETDE--------- 51
Query: 623 KPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRI-GLVETYSLTG 681
S + YE+ + T K+ G +L
Sbjct: 52 -----------------------SSVPELYGYEVLISSTGKDGKYKSVYVGEETNITLND 88
Query: 682 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPP 720
L P Y+ + A+ +G + T P P
Sbjct: 89 LKPAMDYHAKVQAEYNSIKGTPSEAEIFTTLSCEPDIPN 127
Score = 66.2 bits (161), Expect = 4e-13
Identities = 22/130 (16%), Positives = 42/130 (32%), Gaps = 14/130 (10%)
Query: 464 GEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPNG---------QITG 514
G ++ + + + + + T+V+ W P + ++ G
Sbjct: 1 GSSGSSGDEETKAFEALL-SNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYG 59
Query: 515 YKVYYTQDQSLPMSAWETQVVDNNQLT-TISDLTPHTIYTIRVQAFTSVGPGPLSAPVLV 573
Y+V + V + T++DL P Y +VQA + G S +
Sbjct: 60 YEVLISSTGK---DGKYKSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAEIF 116
Query: 574 KTQQGVPSQP 583
T P P
Sbjct: 117 TTLSCEPDIP 126
Score = 65.4 bits (159), Expect = 8e-13
Identities = 21/126 (16%), Positives = 49/126 (38%), Gaps = 9/126 (7%)
Query: 699 GEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGH-------IVY 751
G ++ + + + + V+ + + + ++ ++W PP + +
Sbjct: 1 GSSGSSGDEETKAFEALLSNIVKPVASD-IQARTVVLTWSPPSSLINGETDESSVPELYG 59
Query: 752 YKLQFVETGRSDSEASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRT 811
Y++ TG+ D + V + +T+ L++LK +Y V A + G S T
Sbjct: 60 YEVLISSTGK-DGKYKSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAEIFTT 118
Query: 812 HEDDPS 817
+P
Sbjct: 119 LSCEPD 124
Score = 48.8 bits (116), Expect = 5e-07
Identities = 16/121 (13%), Positives = 30/121 (24%), Gaps = 23/121 (19%)
Query: 277 GRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITAKHHRR---- 332
G S E + + + T+V+ W P + T +
Sbjct: 1 GSSGSSGDEETKAFEALL-SNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYG 59
Query: 333 ------------------IGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTK 374
+G +L L P Y+ + A+ +G + T
Sbjct: 60 YEVLISSTGKDGKYKSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAEIFTTL 119
Query: 375 Q 375
Sbjct: 120 S 120
Score = 43.8 bits (103), Expect = 3e-05
Identities = 13/51 (25%), Positives = 19/51 (37%)
Query: 850 VSDGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKTPGGVPNRP 900
V G + + L+P Y +V A G S+ E T P+ P
Sbjct: 76 VYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAEIFTTLSCEPDIP 126
Score = 29.6 bits (66), Expect = 2.1
Identities = 8/39 (20%), Positives = 13/39 (33%)
Query: 445 QALYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGT 483
L P Y+ + A+ +G + T EP
Sbjct: 87 NDLKPAMDYHAKVQAEYNSIKGTPSEAEIFTTLSCEPDI 125
>2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein; NMR
{Homo sapiens} PDB: 2h45_A
Length = 95
Score = 76.4 bits (188), Expect = 4e-17
Identities = 15/92 (16%), Positives = 34/92 (36%), Gaps = 1/92 (1%)
Query: 199 TLPVAPLDVKISEVTATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEIS-GIITTYYTV 257
+ ++E+TA+S + W S+T+ + ++Y+ + T +
Sbjct: 4 GSHLVATSESVTEITASSFVVSWVSASDTVSGFRVEYELSEEGDEPQYLDLPSTATSVNI 63
Query: 258 RNLSPYTEYEFYIIAVNNLGRGPPSSPAVITT 289
+L P +Y + ++ G TT
Sbjct: 64 PDLLPGRKYIVNVYQISEDGEQSLILSTSQTT 95
Score = 53.3 bits (128), Expect = 5e-09
Identities = 12/93 (12%), Positives = 33/93 (35%), Gaps = 5/93 (5%)
Query: 719 PPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFV 778
+ S ++++S +SW + +++++ + D + TS
Sbjct: 8 VATSESVTEITASSFVVSWVSAS-----DTVSGFRVEYELSEEGDEPQYLDLPSTATSVN 62
Query: 779 LDELKKWTEYRIWVLAGTSIGDGPSSYPITIRT 811
+ +L +Y + V + G+ + T
Sbjct: 63 IPDLLPGRKYIVNVYQISEDGEQSLILSTSQTT 95
Score = 52.5 bits (126), Expect = 1e-08
Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 6/93 (6%)
Query: 484 APRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLT-T 542
V +++S+ V+ W ++G++V Y + + + + +
Sbjct: 8 VATSESVTEITASSFVVSWVSAS---DTVSGFRVEYELSEE--GDEPQYLDLPSTATSVN 62
Query: 543 ISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKT 575
I DL P Y + V + G L T
Sbjct: 63 IPDLLPGRKYIVNVYQISEDGEQSLILSTSQTT 95
Score = 38.6 bits (90), Expect = 8e-04
Identities = 8/80 (10%), Positives = 26/80 (32%), Gaps = 5/80 (6%)
Query: 624 PRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRI--GLVETYSLTG 681
+I ++ ++W + + + + + + + + + ++
Sbjct: 9 ATSESVTEITASSFVVSWVSAS---DTVSGFRVEYELSEEGDEPQYLDLPSTATSVNIPD 65
Query: 682 LYPNTLYYIWLAAQSPRGEG 701
L P Y + + S GE
Sbjct: 66 LLPGRKYIVNVYQISEDGEQ 85
Score = 35.2 bits (81), Expect = 0.013
Identities = 11/85 (12%), Positives = 25/85 (29%), Gaps = 11/85 (12%)
Query: 290 GETEPGTAPRDVQVRPLSSSTMVIQWDEPETP--NGQITAKHHRRIGLVE---------T 338
G V +++S+ V+ W ++ + + +
Sbjct: 1 GPLGSHLVATSESVTEITASSFVVSWVSASDTVSGFRVEYELSEEGDEPQYLDLPSTATS 60
Query: 339 YSLTGLYPNTLYYIWLAAQSPRGEG 363
++ L P Y + + S GE
Sbjct: 61 VNIPDLLPGRKYIVNVYQISEDGEQ 85
Score = 32.9 bits (75), Expect = 0.075
Identities = 9/50 (18%), Positives = 18/50 (36%)
Query: 843 NDPMRFDVSDGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKT 892
D ++ A +N+ L P Y + V ++ G+ + T
Sbjct: 46 GDEPQYLDLPSTATSVNIPDLLPGRKYIVNVYQISEDGEQSLILSTSQTT 95
Score = 27.1 bits (60), Expect = 8.9
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 398 TYSLTGLYPNTLYYIWLAAQSPRGEG 423
+ ++ L P Y + + S GE
Sbjct: 60 SVNIPDLLPGRKYIVNVYQISEDGEQ 85
>1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 120
Score = 77.2 bits (190), Expect = 5e-17
Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 5/98 (5%)
Query: 489 QVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPM-SAWETQVVDNN--QLTTISD 545
L+ +T+ + W I GY+V Y Q L S+W+ + + +
Sbjct: 23 NPVVLTPTTVQVTWTVDR-QPQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVN 81
Query: 546 LTPHTIYTIRVQAFTSVGPGPLSAPVLVKT-QQGVPSQ 582
L Y I+V+ + + G S V+T ++ PS
Sbjct: 82 LKKGVTYEIKVRPYFNEFQGMDSESKTVRTTEESGPSS 119
Score = 75.3 bits (185), Expect = 2e-16
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 1/92 (1%)
Query: 726 EPLSSTSIRISWE-PPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFVLDELKK 784
L+ T+++++W + G+ V Y+ S + + + S VL LKK
Sbjct: 25 VVLTPTTVQVTWTVDRQPQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVNLKK 84
Query: 785 WTEYRIWVLAGTSIGDGPSSYPITIRTHEDDP 816
Y I V + G S T+RT E+
Sbjct: 85 GVTYEIKVRPYFNEFQGMDSESKTVRTTEESG 116
Score = 65.3 bits (159), Expect = 5e-13
Identities = 17/97 (17%), Positives = 33/97 (34%), Gaps = 7/97 (7%)
Query: 208 KISEVTATSVRLDWTYPSET--LLYYVIQYKPKAANTPYS-----EISGIITTYYTVRNL 260
+T T+V++ WT + + Y + Y+ + S + + NL
Sbjct: 23 NPVVLTPTTVQVTWTVDRQPQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVNL 82
Query: 261 SPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTA 297
YE + N +G S + T E ++
Sbjct: 83 KKGVTYEIKVRPYFNEFQGMDSESKTVRTTEESGPSS 119
Score = 48.7 bits (116), Expect = 4e-07
Identities = 16/99 (16%), Positives = 29/99 (29%), Gaps = 9/99 (9%)
Query: 629 AVDIQETAVTLAWSKPTHSGENIISYELYW------NDTYAKAKHHRRIGLVETYSLTGL 682
V + T V + W+ I Y + + T + ++ + L L
Sbjct: 24 PVVLTPTTVQVTWTVDRQPQF-IQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVNL 82
Query: 683 YPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQ 721
Y I + +G + VRT + P
Sbjct: 83 KKGVTYEIKVRPYFNEFQGMDSESKTVRTTE--ESGPSS 119
Score = 44.5 bits (105), Expect = 1e-05
Identities = 9/47 (19%), Positives = 17/47 (36%)
Query: 847 RFDVSDGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKTP 893
D + L+ Y I+V + G S+ +T++T
Sbjct: 66 NLDAKVPTERSAVLVNLKKGVTYEIKVRPYFNEFQGMDSESKTVRTT 112
Score = 42.6 bits (100), Expect = 5e-05
Identities = 12/92 (13%), Positives = 23/92 (25%), Gaps = 19/92 (20%)
Query: 302 QVRPLSSSTMVIQWDEPETPNGQIT------------------AKHHRRIGLVETYSLTG 343
L+ +T+ + W I ++ + L
Sbjct: 23 NPVVLTPTTVQVTWTVDR-QPQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVN 81
Query: 344 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQ 375
L Y I + +G + VRT +
Sbjct: 82 LKKGVTYEIKVRPYFNEFQGMDSESKTVRTTE 113
Score = 37.9 bits (88), Expect = 0.002
Identities = 8/48 (16%), Positives = 15/48 (31%)
Query: 388 KHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQ 435
++ + L L Y I + +G + VRT +
Sbjct: 66 NLDAKVPTERSAVLVNLKKGVTYEIKVRPYFNEFQGMDSESKTVRTTE 113
Score = 32.2 bits (73), Expect = 0.24
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 447 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQ 478
L Y I + +G + VRT +
Sbjct: 82 LKKGVTYEIKVRPYFNEFQGMDSESKTVRTTE 113
>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK,
fibronectin type III (FN3) domain, structural genomics,
NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1
Length = 107
Score = 76.4 bits (188), Expect = 6e-17
Identities = 25/108 (23%), Positives = 41/108 (37%), Gaps = 13/108 (12%)
Query: 480 EPGTAPRDVQVRPLSSSTMVIQWD--EPETPNGQITGYKV-YYTQDQSLPMSAWETQVVD 536
+ +++ + + W P P G Y++ QD+ E +V
Sbjct: 8 AESLSGLSLKLVKKEPRQLELTWAGSRPRNPGG-NLSYELHVLNQDEEWHQMVLEPRV-- 64
Query: 537 NNQLTTISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPSQPR 584
++ L P T Y +RV+ T +GPGP S +T PS P
Sbjct: 65 -----LLTKLQPDTTYIVRVRTLTPLGPGPFSPDHEFRTSP--PSGPS 105
Score = 69.0 bits (169), Expect = 2e-14
Identities = 16/96 (16%), Positives = 32/96 (33%), Gaps = 6/96 (6%)
Query: 716 PGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQT 775
++ + ++W G + Y+L + + + +
Sbjct: 9 ESLSGLSLKLVKKEPRQLELTWAGSRPRNPGG-NLSYELHVLNQDEEWHQMVL-----EP 62
Query: 776 SFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRT 811
+L +L+ T Y + V T +G GP S RT
Sbjct: 63 RVLLTKLQPDTTYIVRVRTLTPLGPGPFSPDHEFRT 98
Score = 64.4 bits (157), Expect = 9e-13
Identities = 18/103 (17%), Positives = 32/103 (31%), Gaps = 11/103 (10%)
Query: 201 PVAPLDVKISEVTATSVRLDWTYPSET----LLYYVIQYKPKAANTPYSEISGIITTYYT 256
++ L +K+ + + L W L Y + + ++
Sbjct: 10 SLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEEWHQM----VLEPRVL 65
Query: 257 VRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPR 299
+ L P T Y + + LG GP S T P + P
Sbjct: 66 LTKLQPDTTYIVRVRTLTPLGPGPFSPDHEFRTS---PPSGPS 105
Score = 56.3 bits (136), Expect = 6e-10
Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 6/98 (6%)
Query: 624 PRDLRAVDIQETAVTLAWSKPTHSGEN-IISYELYWNDTYAKAKHHRRIGLVETYSLTGL 682
L+ V + + L W+ +SYEL+ + + ++ L LT L
Sbjct: 13 GLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHV---LNQDEEWHQMVLEPRVLLTKL 69
Query: 683 YPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPP 720
P+T Y + + +P G G +P RT P P
Sbjct: 70 QPDTTYIVRVRTLTPLGPGPFSPDHEFRTSP--PSGPS 105
Score = 51.3 bits (123), Expect = 4e-08
Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 10/91 (10%)
Query: 293 EPGTAPRDVQVRPLSSSTMVIQWD--EPETPNGQIT-------AKHHRRIGLVET-YSLT 342
+ +++ + + W P P G ++ ++E LT
Sbjct: 8 AESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEEWHQMVLEPRVLLT 67
Query: 343 GLYPNTLYYIWLAAQSPRGEGATTPPIPVRT 373
L P+T Y + + +P G G +P RT
Sbjct: 68 KLQPDTTYIVRVRTLTPLGPGPFSPDHEFRT 98
Score = 42.9 bits (101), Expect = 3e-05
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 860 VTGLQPDTIYTIQVAALTRKGDGDRSKPETIKT 892
+T LQPDT Y ++V LT G G S +T
Sbjct: 66 LTKLQPDTTYIVRVRTLTPLGPGPFSPDHEFRT 98
Score = 35.9 bits (83), Expect = 0.008
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 398 TYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRT 433
LT L P+T Y + + +P G G +P RT
Sbjct: 63 RVLLTKLQPDTTYIVRVRTLTPLGPGPFSPDHEFRT 98
Score = 30.5 bits (69), Expect = 0.62
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 447 LYPNTLYYIWLAAQSPRGEGATTPPIPVRT 476
L P+T Y + + +P G G +P RT
Sbjct: 69 LQPDTTYIVRVRTLTPLGPGPFSPDHEFRT 98
Score = 27.8 bits (62), Expect = 5.3
Identities = 4/36 (11%), Positives = 12/36 (33%), Gaps = 2/36 (5%)
Query: 32 EPGTAPRDVQVRPLSSSTMVIQWD--EPETPNGQIT 65
+ +++ + + W P P G ++
Sbjct: 8 AESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLS 43
>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein,
adnect antitumor, drug, engineered binding protein; HET:
NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D*
Length = 114
Score = 74.9 bits (184), Expect = 2e-16
Identities = 20/111 (18%), Positives = 36/111 (32%), Gaps = 5/111 (4%)
Query: 198 LTLPVAPLDVKISEVTATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEIS-GIITTYYT 256
+ + P D+++ T TS+ + W + YY I Y N+P E + T
Sbjct: 1 MGVSDVPRDLEVVAATPTSLLISWDSGRGSYQYYRITYGETGGNSPVQEFTVPGPVHTAT 60
Query: 257 VRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGT----APRDVQV 303
+ L P +Y + AV + + + P
Sbjct: 61 ISGLKPGVDYTITVYAVTDHKPHADGPHTYHESPISINYRTEIDKPSQHHH 111
Score = 71.1 bits (174), Expect = 6e-15
Identities = 28/113 (24%), Positives = 43/113 (38%), Gaps = 14/113 (12%)
Query: 715 VPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQ 774
V P+++ + TS+ ISW+ G YY++ + ETG +
Sbjct: 3 VSD-VPRDLEVVAATPTSLLISWDSGR-----GSYQYYRITYGETGGNSPVQEFTVPGPV 56
Query: 775 TSFVLDELKKWTEYRIWVLAGTSIGDGPS------SYPITI--RTHEDDPSEV 819
+ + LK +Y I V A T PI+I RT D PS+
Sbjct: 57 HTATISGLKPGVDYTITVYAVTDHKPHADGPHTYHESPISINYRTEIDKPSQH 109
Score = 61.1 bits (148), Expect = 2e-11
Identities = 29/109 (26%), Positives = 43/109 (39%), Gaps = 12/109 (11%)
Query: 484 APRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLTTI 543
PRD++V + ++++I WD G Y++ Y + E V TI
Sbjct: 6 VPRDLEVVAATPTSLLISWDSG---RGSYQYYRITYGETGGNS-PVQEFTVPGPVHTATI 61
Query: 544 SDLTPHTIYTIRVQAFTSVGPGP------LSAPVLVK--TQQGVPSQPR 584
S L P YTI V A T P +P+ + T+ PSQ
Sbjct: 62 SGLKPGVDYTITVYAVTDHKPHADGPHTYHESPISINYRTEIDKPSQHH 110
Score = 44.1 bits (104), Expect = 1e-05
Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 5/90 (5%)
Query: 624 PRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRI--GLVETYSLTG 681
PRDL V T++ ++W + Y + + +T + G V T +++G
Sbjct: 7 PRDLEVVAATPTSLLISWDSGRG---SYQYYRITYGETGGNSPVQEFTVPGPVHTATISG 63
Query: 682 LYPNTLYYIWLAAQSPRGEGATTPPIPVRT 711
L P Y I + A + A P +
Sbjct: 64 LKPGVDYTITVYAVTDHKPHADGPHTYHES 93
Score = 42.6 bits (100), Expect = 4e-05
Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 11/88 (12%)
Query: 297 APRDVQVRPLSSSTMVIQWDEPETP-----------NGQITAKHHRRIGLVETYSLTGLY 345
PRD++V + ++++I WD G + G V T +++GL
Sbjct: 6 VPRDLEVVAATPTSLLISWDSGRGSYQYYRITYGETGGNSPVQEFTVPGPVHTATISGLK 65
Query: 346 PNTLYYIWLAAQSPRGEGATTPPIPVRT 373
P Y I + A + A P +
Sbjct: 66 PGVDYTITVYAVTDHKPHADGPHTYHES 93
Score = 34.5 bits (79), Expect = 0.028
Identities = 14/57 (24%), Positives = 23/57 (40%)
Query: 843 NDPMRFDVSDGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKTPGGVPNR 899
N P++ G ++GL+P YTI V A+T ++P + R
Sbjct: 44 NSPVQEFTVPGPVHTATISGLKPGVDYTITVYAVTDHKPHADGPHTYHESPISINYR 100
>2crm_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 74.8 bits (184), Expect = 3e-16
Identities = 17/102 (16%), Positives = 38/102 (37%), Gaps = 7/102 (6%)
Query: 201 PVAPLDVKISEVTATSVRLDWTYPSET----LLYYVIQYKPKAANTPYSEISGIITTYYT 256
PV P ++ + S ++ W P + + YV++ + + I T +
Sbjct: 21 PVKPSVK--GKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYSGATREHL 78
Query: 257 VRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAP 298
L+P Y + +++ G+ S ++ T G +
Sbjct: 79 CDRLNPGCFYRLRVYCISDGGQSAVSESLLVQT-PAVSGPSS 119
Score = 66.3 bits (162), Expect = 3e-13
Identities = 25/121 (20%), Positives = 42/121 (34%), Gaps = 3/121 (2%)
Query: 464 GEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQ-ITGYKVYYTQD 522
G ++ + T +PG + + S + I WD P+ G I Y V +
Sbjct: 1 GSSGSSGVVEFTTCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEG 60
Query: 523 QSLPMSAWETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPSQ 582
+ + WE + L P Y +RV + G +S +LV+T
Sbjct: 61 SN--GNKWEMIYSGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQTPAVSGPS 118
Query: 583 P 583
Sbjct: 119 S 119
Score = 60.5 bits (147), Expect = 3e-11
Identities = 24/115 (20%), Positives = 46/115 (40%), Gaps = 6/115 (5%)
Query: 699 GEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGH--IVYYKLQF 756
G ++ + T PG P + + S S +I+W+PP + NG I Y ++
Sbjct: 1 GSSGSSGVVEFTTCPDKPGIPVKPSVKGKIHSHSFKITWDPP---KDNGGATINKYVVEM 57
Query: 757 VETGRSDSEASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRT 811
E + ++ ++ + D L YR+ V + G S + ++T
Sbjct: 58 AEGS-NGNKWEMIYSGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQT 111
Score = 47.0 bits (112), Expect = 1e-06
Identities = 26/159 (16%), Positives = 40/159 (25%), Gaps = 41/159 (25%)
Query: 563 GPGPLSAPVLVKTQQGVPSQPRDLRAV-DIQETAVTLAWSKPTHSGENIISYELYWNDTY 621
G S V T P P I + + W P +G I+ Y
Sbjct: 1 GSSGSSGVVEFTTCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINK--YV---- 54
Query: 622 AKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVETYSLTG 681
V++ E + W G +
Sbjct: 55 --------VEMAEGSNGNKWEMIYS-------------------------GATREHLCDR 81
Query: 682 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPP 720
L P Y + + S G+ A + + V+T V G
Sbjct: 82 LNPGCFYRLRVYCISDGGQSAVSESLLVQT-PAVSGPSS 119
Score = 41.7 bits (98), Expect = 1e-04
Identities = 21/111 (18%), Positives = 34/111 (30%), Gaps = 14/111 (12%)
Query: 277 GRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQ------ITAKHH 330
G S TT +PG + + S + I WD P+ G +
Sbjct: 1 GSSGSSGVVEFTTCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEG 60
Query: 331 RRI--------GLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRT 373
G + L P Y + + S G+ A + + V+T
Sbjct: 61 SNGNKWEMIYSGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQT 111
Score = 37.8 bits (88), Expect = 0.003
Identities = 10/44 (22%), Positives = 18/44 (40%)
Query: 850 VSDGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKTP 893
+ G E L P Y ++V ++ G S+ ++TP
Sbjct: 69 IYSGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQTP 112
>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91,
TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 110
Score = 74.0 bits (182), Expect = 4e-16
Identities = 22/115 (19%), Positives = 43/115 (37%), Gaps = 9/115 (7%)
Query: 466 GATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSL 525
G++ PV P T ++ +++ + W +P GY +
Sbjct: 1 GSSGSSGPV------PATPILQLEECCTHNNSATLSWKQPPLSTVPADGYILELDDGNG- 53
Query: 526 PMSAWETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVP 580
+ V + T+ L ++ Y RV+AF G P S ++++T +G
Sbjct: 54 --GQFREVYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEGSG 106
Score = 74.0 bits (182), Expect = 4e-16
Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 5/103 (4%)
Query: 199 TLPVAP-LDVKISEVTATSVRLDWTYPSET---LLYYVIQYKPKAANTPYSEISGIITTY 254
+P P L ++ S L W P + Y+++ + E+ T
Sbjct: 8 PVPATPILQLEECCTHNNSATLSWKQPPLSTVPADGYILELD-DGNGGQFREVYVGKETM 66
Query: 255 YTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTA 297
TV L + Y + A N G P S V+ T E ++
Sbjct: 67 CTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEGSGPSS 109
Score = 65.2 bits (159), Expect = 5e-13
Identities = 25/116 (21%), Positives = 41/116 (35%), Gaps = 10/116 (8%)
Query: 701 GATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETG 760
G++ PV P P + + S +SW+ PP S Y L+ +
Sbjct: 1 GSSGSSGPV------PATPILQLEECCTHNNSATLSWKQPP--LSTVPADGYILELDDGN 52
Query: 761 RSDSEASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDP 816
+ V + +T +D L + Y V A G P S + ++T E
Sbjct: 53 --GGQFREVYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEGSG 106
Score = 57.9 bits (140), Expect = 2e-10
Identities = 19/99 (19%), Positives = 36/99 (36%), Gaps = 3/99 (3%)
Query: 624 PRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVETYSLTGLY 683
L + TL+W +P S Y L +D +G ++ GL+
Sbjct: 14 ILQLEECCTHNNSATLSWKQPPLSTVPADGYILELDDGNGGQFREVYVGKETMCTVDGLH 73
Query: 684 PNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQN 722
N+ Y + A + G + + ++T G+ P +
Sbjct: 74 FNSTYNARVKAFNKTGVSPYSKTLVLQTS---EGSGPSS 109
Score = 43.2 bits (102), Expect = 3e-05
Identities = 12/100 (12%), Positives = 34/100 (34%), Gaps = 12/100 (12%)
Query: 288 TTGETEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITA----------KHHRRIGLVE 337
+ P T ++ +++ + W +P R + + +
Sbjct: 4 GSSGPVPATPILQLEECCTHNNSATLSWKQPPLSTVPADGYILELDDGNGGQFREVYVGK 63
Query: 338 --TYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQ 375
++ GL+ N+ Y + A + G + + ++T +
Sbjct: 64 ETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSE 103
Score = 42.4 bits (100), Expect = 5e-05
Identities = 13/49 (26%), Positives = 20/49 (40%)
Query: 849 DVSDGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKTPGGVP 897
+V G V GL ++ Y +V A + G SK ++T G
Sbjct: 58 EVYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEGSG 106
Score = 32.8 bits (75), Expect = 0.12
Identities = 7/38 (18%), Positives = 18/38 (47%)
Query: 398 TYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQ 435
++ GL+ N+ Y + A + G + + ++T +
Sbjct: 66 MCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSE 103
Score = 27.8 bits (62), Expect = 6.7
Identities = 4/34 (11%), Positives = 11/34 (32%)
Query: 33 PGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITH 66
P T ++ +++ + W +P
Sbjct: 10 PATPILQLEECCTHNNSATLSWKQPPLSTVPADG 43
Score = 27.8 bits (62), Expect = 6.8
Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 447 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAP 485
L+ N+ Y + A + G + + ++T G+ P
Sbjct: 72 LHFNSTYNARVKAFNKTGVSPYSKTLVLQTS---EGSGP 107
>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein
binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP:
b.1.2.1
Length = 115
Score = 74.2 bits (182), Expect = 4e-16
Identities = 21/114 (18%), Positives = 40/114 (35%), Gaps = 18/114 (15%)
Query: 200 LPVAPLDVKISEVTATSVRLDWTYPS---ETLLYYVIQYKPKAANTPYSEISGII----- 251
P ++ ++ SV L W P ++ + +QY+ + + I
Sbjct: 2 STYPPTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKP 61
Query: 252 --------TTYYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTA 297
+ +V +L P Y F I+AV + S+ + +PG A
Sbjct: 62 KWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFY--LQPGAA 113
Score = 61.1 bits (148), Expect = 1e-11
Identities = 23/109 (21%), Positives = 37/109 (33%), Gaps = 12/109 (11%)
Query: 484 APRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYY----------TQDQSLPMSAWETQ 533
P V LS +++++W P I +KV Y T + ++P +
Sbjct: 5 PPTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWN 64
Query: 534 VVDNNQLT-TISDLTPHTIYTIRVQAFTSVGPGPLSAPVL-VKTQQGVP 580
T +++DL P Y R+ A S S Q G
Sbjct: 65 SELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAA 113
Score = 54.5 bits (131), Expect = 3e-09
Identities = 22/104 (21%), Positives = 34/104 (32%), Gaps = 15/104 (14%)
Query: 715 VPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDS---------- 764
PP + LS S+ + W P IV +K+Q+ G+ +
Sbjct: 2 STY-PPTPPNVTRLSDESVMLRWMVP--RNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPY 58
Query: 765 --EASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYP 806
L + + +LK YR +LA S D S
Sbjct: 59 GKPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNT 102
Score = 46.4 bits (110), Expect = 2e-06
Identities = 22/137 (16%), Positives = 36/137 (26%), Gaps = 28/137 (20%)
Query: 578 GVPSQPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKPRDLRAVDIQETAV 637
G P + + +V L W P + G I+ + V +
Sbjct: 1 GSTYPPTPPNVTRLSDESVMLRWMVPRNDGLPIVIF---------------KVQYRMVGK 45
Query: 638 TLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSP 697
W N Y K K + +G T S+T L P Y + A
Sbjct: 46 RKNWQTTND------------NIPYGKPKWNSELGKSFTASVTDLKPQHTYRFRILAVYS 93
Query: 698 RGEGATTPP-IPVRTKQ 713
+ + +
Sbjct: 94 NNDNKESNTSAKFYLQP 110
Score = 33.4 bits (76), Expect = 0.079
Identities = 9/41 (21%), Positives = 18/41 (43%)
Query: 847 RFDVSDGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKP 887
+++ G + +VT L+P Y ++ A+ D S
Sbjct: 62 KWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNT 102
Score = 33.0 bits (75), Expect = 0.13
Identities = 16/106 (15%), Positives = 28/106 (26%), Gaps = 27/106 (25%)
Query: 297 APRDVQVRPLSSSTMVIQWDEPETPNGQIT--------------------------AKHH 330
P V LS +++++W P I K +
Sbjct: 5 PPTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWN 64
Query: 331 RRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPP-IPVRTKQ 375
+G T S+T L P Y + A + + +
Sbjct: 65 SELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQP 110
>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III
module, beta-sheet sandwich, cell membrane,
glycoprotein, immunoglobulin domain; NMR {Homo sapiens}
Length = 114
Score = 74.1 bits (182), Expect = 5e-16
Identities = 20/107 (18%), Positives = 36/107 (33%), Gaps = 7/107 (6%)
Query: 196 PLLTLPVAPLDVKISEVTATSVRLDWTYPSE---TLLYYVIQYKPKAANTPYSEIS-GII 251
+ P P + + S +L T + +L Y+++Y+ K + E
Sbjct: 4 ASMREPSPP-SIHGQPSSGKSFKLSITKQDDGGAPILEYIVKYRSKDKEDQWLEKKVQGN 62
Query: 252 TTYYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAP 298
+ + +L YE I A N LG P+ +P
Sbjct: 63 KDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMP--PKPNIIK 107
Score = 53.7 bits (129), Expect = 5e-09
Identities = 17/98 (17%), Positives = 38/98 (38%), Gaps = 5/98 (5%)
Query: 715 VPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQ 774
P P ++ +P S S ++S + I+ Y +++ + D N+
Sbjct: 8 EPSPP--SIHGQPSSGKSFKLSITKQDDGGA--PILEYIVKYRSKDKEDQWLEKKVQGNK 63
Query: 775 TSFVLDELKKWTEYRIWVLAGTSIGDG-PSSYPITIRT 811
+L+ L+ Y + + A +G P+ Y ++
Sbjct: 64 DHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMPP 101
Score = 53.3 bits (128), Expect = 9e-09
Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 3/87 (3%)
Query: 485 PRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLT-TI 543
P + +P S + + + + I Y V Y W + V N+ +
Sbjct: 11 PPSIHGQPSSGKSFKLSITKQDDGGAPILEYIVKYRSKDKE--DQWLEKKVQGNKDHIIL 68
Query: 544 SDLTPHTIYTIRVQAFTSVGPGPLSAP 570
L Y +++ A +G +
Sbjct: 69 EHLQWTMGYEVQITAANRLGYSEPTVY 95
Score = 38.3 bits (89), Expect = 0.002
Identities = 13/85 (15%), Positives = 26/85 (30%), Gaps = 2/85 (2%)
Query: 624 PRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKA--KHHRRIGLVETYSLTG 681
P + + L+ +K G I+ Y + + + + G + L
Sbjct: 11 PPSIHGQPSSGKSFKLSITKQDDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEH 70
Query: 682 LYPNTLYYIWLAAQSPRGEGATTPP 706
L Y + + A + G T
Sbjct: 71 LQWTMGYEVQITAANRLGYSEPTVY 95
Score = 32.5 bits (74), Expect = 0.15
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 852 DGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPE--TIKTPGGVPNRPH 901
G + + LQ Y +Q+ A R G + + E P + + H
Sbjct: 60 QGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMPPKPNIIKDHHH 111
Score = 30.2 bits (68), Expect = 1.1
Identities = 10/67 (14%), Positives = 23/67 (34%), Gaps = 2/67 (2%)
Query: 574 KTQQGVPSQPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKPR-DLRAVDI 632
+ PS P + + L+ +K G I+ Y + + + + + V
Sbjct: 3 EASMREPSPPS-IHGQPSSGKSFKLSITKQDDGGAPILEYIVKYRSKDKEDQWLEKKVQG 61
Query: 633 QETAVTL 639
+ + L
Sbjct: 62 NKDHIIL 68
Score = 29.8 bits (67), Expect = 1.3
Identities = 15/117 (12%), Positives = 27/117 (23%), Gaps = 20/117 (17%)
Query: 291 ETEPGTA---PRDVQVRPLSSSTMVIQWDEPETPNGQITA--------------KHHRRI 333
E E P + +P S + + + + I +
Sbjct: 1 EAEASMREPSPPSIHGQPSSGKSFKLSITKQDDGGAPILEYIVKYRSKDKEDQWLEKKVQ 60
Query: 334 GLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYGKTPGFGEQAAKHH 390
G + L L Y + + A + G T + HH
Sbjct: 61 GNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMPPKPNIIKDHHHH---HH 114
>3s98_A Interferon alpha/beta receptor 1; human, type I interferons,
receptor chain, ifnar1, fibronect III, type I interferon
receptor chain; HET: NAG; 1.90A {Homo sapiens}
Length = 306
Score = 78.0 bits (191), Expect = 1e-15
Identities = 46/346 (13%), Positives = 103/346 (29%), Gaps = 61/346 (17%)
Query: 480 EPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQ 539
+P +P+ V+V + +++W+ + G +T + Y Q M W N
Sbjct: 2 DPLKSPQKVEVD-IIDDNFILRWNRSDESVGNVT-FSFDY---QKTGMDNWIKLSGCQNI 56
Query: 540 LTTISDLT-----PHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPSQPRDLRAVDIQET 594
+T + + + +R++A + P ++ ++ ++
Sbjct: 57 TSTKCNFSSLKLNVYEEIKLRIRAEKE-NTSSWYEVDSFTPFRKAQIGPPEVH-LEAEDK 114
Query: 595 AVTLAWSKPTHSGENIISYELYWNDTYAKPRDLRAVDIQETAVTLAWSKPTHSGENIISY 654
A+ + S T W+ S +Y
Sbjct: 115 AIVIHISPGTKDSVM-------------------------------WALDGLS----FTY 139
Query: 655 EL-YWNDTYAKAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRG--EGATTPPIPVRT 711
L W ++ + + + + L P T Y + + A G +P ++T
Sbjct: 140 SLVIWKNSSGVEERIE--NIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKT 197
Query: 712 KQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEA---SI 768
PP+N+ + + + W+ + V + F++ + I
Sbjct: 198 TVENELPPPENIEVSVQNQNYV-LKWDYTY--ANMTFQVQWLHAFLKRNPGNHLYKWKQI 254
Query: 769 VTLKNQTS---FVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRT 811
+N + + + Y + V A S I T
Sbjct: 255 PDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDT 300
Score = 67.3 bits (163), Expect = 4e-12
Identities = 41/312 (13%), Positives = 87/312 (27%), Gaps = 40/312 (12%)
Query: 293 EPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQIT----------------AKHHRRIGLV 336
+P +P+ V+V + +++W+ + G +T +
Sbjct: 2 DPLKSPQKVEVD-IIDDNFILRWNRSDESVGNVTFSFDYQKTGMDNWIKLSGCQNITSTK 60
Query: 337 ETYSLTGLYPNTLYYIWLAAQSPRGEGAT-TPPIPVRTKQYGKTPGFGEQAAKHHRRIGL 395
+S L + + A+ K P +A I +
Sbjct: 61 CNFSSLKLNVYEEIKLRIRAEKENTSSWYEVDSFTPFRKAQIGPPEVHLEAEDKAIVIHI 120
Query: 396 ----VETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYGKTPGFGEQALYPNT 451
++ + Y + + S E + L P T
Sbjct: 121 SPGTKDSVMWALDGLSFTYSLVIWKNSSGVE----------ERIENIYSRHKIYKLSPET 170
Query: 452 LYYIWLAAQSPRG--EGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPN 509
Y + + A G +P ++T P +++V + + V++WD
Sbjct: 171 TYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNY-VLKWDYTYANM 229
Query: 510 GQITGYKVYYTQDQSLPMSAWETQVVDNNQLTT-----ISDLTPHTIYTIRVQAFTSVGP 564
+ + + Q+ D + T ++ IY +RVQA
Sbjct: 230 TFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNT 289
Query: 565 GPLSAPVLVKTQ 576
S + T+
Sbjct: 290 SFWSEEIKFDTE 301
Score = 66.9 bits (162), Expect = 6e-12
Identities = 44/304 (14%), Positives = 85/304 (27%), Gaps = 39/304 (12%)
Query: 622 AKPRDLRAVDIQETAVTLAWSKPTHSGENI---ISYELYWNDTYAKAKHHRRIGLVE-TY 677
P+ + VDI + L W++ S N+ Y+ D + K + I + +
Sbjct: 5 KSPQKVE-VDIIDDNFILRWNRSDESVGNVTFSFDYQKTGMDNWIKLSGCQNITSTKCNF 63
Query: 678 SLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISW 737
S L + + A+ + + PP+ V E +I I
Sbjct: 64 SSLKLNVYEEIKLRIRAEKE-NTSSWYEVDSFTPFRKAQIGPPE-VHLEA-EDKAIVIHI 120
Query: 738 EPP----PVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFVLDELKKWTEYRIWVL 793
P + +G Y L + S E I + + +L T Y + V
Sbjct: 121 SPGTKDSVMWALDGLSFTYSLVIWKNS-SGVEERIEN--IYSRHKIYKLSPETTYCLKVK 177
Query: 794 AGTSIGDGPSSY-PITIRTHEDDPSEVCPTQNDFRKNKKT---------NGSNFKGGYLN 843
A Y P+ + P + + F+ +L+
Sbjct: 178 AALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKWDYTYANMTFQVQWLH 237
Query: 844 DPMRFDVSDGGALELNVT--------------GLQPDTIYTIQVAALTRKGDGDRSKPET 889
++ + + + + IY ++V A S+
Sbjct: 238 AFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIK 297
Query: 890 IKTP 893
T
Sbjct: 298 FDTE 301
Score = 62.2 bits (150), Expect = 2e-10
Identities = 36/271 (13%), Positives = 77/271 (28%), Gaps = 38/271 (14%)
Query: 447 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMV-IQWDEP 505
L + + A+ + T + P +V + + ++ I
Sbjct: 68 LNVYEEIKLRIRAEKENTSSWYE--VDSFTPFRKAQIGPPEVHLEAEDKAIVIHISPGTK 125
Query: 506 ETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVGP- 564
++ + G Y+ S E ++ + I L+P T Y ++V+A
Sbjct: 126 DSVMWALDGLSFTYSLVIWKNSSGVEERIENIYSRHKIYKLSPETTYCLKVKAALLTSWK 185
Query: 565 -GPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAK 623
G S +KT P + V +Q L W + ++++ W + K
Sbjct: 186 IGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKWDYTYANM----TFQVQWLHAFLK 241
Query: 624 PRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVETYSLTGLY 683
+ L K EN+ + + ++
Sbjct: 242 ---------RNPGNHLYKWKQIPDCENVKTT--------------------QCVFPQNVF 272
Query: 684 PNTLYYIWLAAQSPRGEGATTPPIPVRTKQY 714
+Y + + A + I T+
Sbjct: 273 QKGIYLLRVQASDGNNTSFWSEEIKFDTEIQ 303
Score = 53.8 bits (128), Expect = 1e-07
Identities = 32/303 (10%), Positives = 75/303 (24%), Gaps = 31/303 (10%)
Query: 203 APLDVKISEVTATSVRLDWTYPSETL--LYYVIQYKPKAAN--TPYSEISGIITTY--YT 256
+P V++ + + L W E++ + + Y+ + S I +T ++
Sbjct: 6 SPQKVEVDIIDDNFI-LRWNRSDESVGNVTFSFDYQKTGMDNWIKLSGCQNITSTKCNFS 64
Query: 257 VRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWD 316
L+ Y E + I A + + + P +V + + ++
Sbjct: 65 SLKLNVYEEIKLRIRAEKENTSSWYEVDSFTPFRKAQI--GPPEVHLEAEDKAIVI-HIS 121
Query: 317 EPETPNGQITAKHHRRIGLVE-----------------TYSLTGLYPNTLYYIWLAAQSP 359
+ + + + L P T Y + + A
Sbjct: 122 PGTKDSVMWALDGLSFTYSLVIWKNSSGVEERIENIYSRHKIYKLSPETTYCLKVKAALL 181
Query: 360 RGEGATTPPIPVRTKQYGKTPGFGEQAAKHHRRIGLVETYSLTGLYPN---TLYYIWLAA 416
PV + Y N + ++
Sbjct: 182 TSWK-IGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKWDYTYANMTFQVQWLHAFL 240
Query: 417 QSPRGEGATTPPIPVRTKQYGKTPGFGEQALYPNTLYYIWLAAQSPRGEGATTPPIPVRT 476
+ G + T Q ++ +Y + + A + I T
Sbjct: 241 KRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDT 300
Query: 477 KQY 479
+
Sbjct: 301 EIQ 303
Score = 48.4 bits (114), Expect = 6e-06
Identities = 28/208 (13%), Positives = 57/208 (27%), Gaps = 26/208 (12%)
Query: 193 KYAPLLTLPVAPLDVKISEVTATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEISGIIT 252
P + L + I T + W + Y ++ +K ++ E I
Sbjct: 102 IGPPEVHLEAEDKAIVIHISPGTKDSVMWALDGLSFTYSLVIWK---NSSGVEERIENIY 158
Query: 253 TYYTVRNLSPYTEYEFYIIAVNNLGR--GPPSSPAVITTGETEPGTAPRDVQVRPLSSST 310
+ + + LSP T Y + A G S I T P +++V + +
Sbjct: 159 SRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNY 218
Query: 311 MVIQWDEPETPNGQI--------------------TAKHHRRIGLVETYSLTGLYPNTLY 350
V++WD + + ++ +Y
Sbjct: 219 -VLKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIY 277
Query: 351 YIWLAAQSPRGEGATTPPIPVRTKQYGK 378
+ + A + I T+
Sbjct: 278 LLRVQASDGNNTSFWSEEIKFDTEIQAF 305
Score = 43.4 bits (101), Expect = 2e-04
Identities = 29/207 (14%), Positives = 55/207 (26%), Gaps = 26/207 (12%)
Query: 716 PGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQT 775
P PQ V + + I + W N + + +
Sbjct: 3 PLKSPQKVEVDIIDDNFI-LRWNRSDESVGNVTFSFDYQKTGMDNWIKLSGCQNITSTKC 61
Query: 776 SFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDPSEVCPTQNDFRKNKKTNGS 835
+F +L + E ++ + A + SS+ +++ P + K
Sbjct: 62 NFSSLKLNVYEEIKLRIRA---EKENTSSWYEVDSFTPFRKAQIGPPEVHLEAEDKAIVI 118
Query: 836 NFKGGYLNDPM--------------------RFDVSDGGALELNVTGLQPDTIYTIQVAA 875
+ G + M + + + L P+T Y ++V A
Sbjct: 119 HISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEERIENIYSRHKIYKLSPETTYCLKVKA 178
Query: 876 LTRKGD--GDRSKPETIKTPGGVPNRP 900
G S IKT P
Sbjct: 179 ALLTSWKIGVYSPVHCIKTTVENELPP 205
Score = 39.1 bits (90), Expect = 0.004
Identities = 36/306 (11%), Positives = 88/306 (28%), Gaps = 55/306 (17%)
Query: 32 EPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITHP------------------------ 67
+P +P+ V+V + +++W+ + G +T
Sbjct: 2 DPLKSPQKVEVD-IIDDNFILRWNRSDESVGNVTFSFDYQKTGMDNWIKLSGCQNITSTK 60
Query: 68 -------PTRAARSHARLAAQSVLRRGRLAHAVRQVADPVRRVPPQFSIPPPA-LLEVML 119
R+ A+ + PP+ + + + +
Sbjct: 61 CNFSSLKLNVYEEIKLRIRAEKENTSSWYEVDSFTPFRKAQIGPPEVHLEAEDKAIVIHI 120
Query: 120 DSPLNLSCVAVGSPMPF----VKWRKGQNIELTPDDKLPVGRNVLTLDRVTESENYTCI- 174
S + + F V W+ +E +++ + + +++ Y C+
Sbjct: 121 SPGTKDSVMWALDGLSFTYSLVIWKNSSGVE----ERIENIYSRHKIYKLSPETTY-CLK 175
Query: 175 -AASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISEVTATSVRLDWTYPSETLLY--- 230
A++L + V C + P ++++S V + L W Y + +
Sbjct: 176 VKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVS-VQNQNYVLKWDYTYANMTFQVQ 234
Query: 231 YVIQYK---PKAANTPYSEISGII----TTYYTVRNLSPYTEYEFYIIAVNNLGRGPPSS 283
++ + P + +I T +N+ Y + A + S
Sbjct: 235 WLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSE 294
Query: 284 PAVITT 289
T
Sbjct: 295 EIKFDT 300
>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1,
midin-2, ring finger protein 60, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 127
Score = 73.0 bits (179), Expect = 2e-15
Identities = 24/115 (20%), Positives = 40/115 (34%), Gaps = 13/115 (11%)
Query: 197 LLTLPVAP-LDVKISEVTATSVRLDWTYPSET-LLYYVIQYKPKAANTPYSE-------- 246
LT P P + ++ + ++ + W E + Y +QY +
Sbjct: 12 YLTAPNPPSIREELCTASHDTITVHWISDDEFSISSYELQYTIFTGQANFISLYNSVDSW 71
Query: 247 --ISGIITTYYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPR 299
+ I +YTV L T Y F + A+N G S P + T + P
Sbjct: 72 MIVPNIKQNHYTVHGLQSGTRYIFIVKAINQAG-SRNSEPTRLKTNSQPFKSGPS 125
Score = 56.8 bits (137), Expect = 6e-10
Identities = 20/109 (18%), Positives = 33/109 (30%), Gaps = 6/109 (5%)
Query: 715 VPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQ-----FVETGRSDSEASIV 769
P P S +I + W + + + Y + F+ S IV
Sbjct: 15 APNPPSIREELCTASHDTITVHWISDDEFSISSYELQYTIFTGQANFISLYNSVDSWMIV 74
Query: 770 TLKNQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDPSE 818
Q + + L+ T Y V A G S P ++T+
Sbjct: 75 PNIKQNHYTVHGLQSGTRYIFIVKAINQAGSRNSE-PTRLKTNSQPFKS 122
Score = 50.7 bits (121), Expect = 1e-07
Identities = 24/104 (23%), Positives = 37/104 (35%), Gaps = 11/104 (10%)
Query: 481 PGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQD------QSLPMSAWETQV 534
P ++ S T+ + W + I+ Y++ YT SL S +
Sbjct: 16 PNPPSIREELCTASHDTITVHWISDD--EFSISSYELQYTIFTGQANFISLYNSVDSWMI 73
Query: 535 VDNNQLT--TISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQ 576
V N + T+ L T Y V+A G S P +KT
Sbjct: 74 VPNIKQNHYTVHGLQSGTRYIFIVKAINQAGSRN-SEPTRLKTN 116
Score = 34.5 bits (79), Expect = 0.037
Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 1/65 (1%)
Query: 830 KKTNGSNFKGGYLNDPMRFDVSDGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPET 889
T +NF Y + V + V GLQ T Y V A+ + G S+P
Sbjct: 54 IFTGQANFISLYNSVDSWMIVPNIKQNHYTVHGLQSGTRYIFIVKAINQAG-SRNSEPTR 112
Query: 890 IKTPG 894
+KT
Sbjct: 113 LKTNS 117
Score = 34.1 bits (78), Expect = 0.052
Identities = 19/108 (17%), Positives = 34/108 (31%), Gaps = 14/108 (12%)
Query: 626 DLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVE---------- 675
+T+ W +I SYEL + +A V+
Sbjct: 22 REELCTASHDTITVHWISDDEF--SISSYELQYTIFTGQANFISLYNSVDSWMIVPNIKQ 79
Query: 676 -TYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQN 722
Y++ GL T Y + A + G + P ++T + P +
Sbjct: 80 NHYTVHGLQSGTRYIFIVKAINQAGSRNSE-PTRLKTNSQPFKSGPSS 126
>3qt2_A Interleukin-5 receptor subunit alpha; cytokine type I receptor
fold, fibronectin type III modules, helical bundle,
cytokine, ligand-receptor complex; HET: BGC; 2.55A {Homo
sapiens}
Length = 317
Score = 76.8 bits (188), Expect = 3e-15
Identities = 39/320 (12%), Positives = 85/320 (26%), Gaps = 56/320 (17%)
Query: 485 PRDVQVRPLSSSTMVIQWDEPE--TPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLTT 542
P + ++ + +++QW Y+V + +ET+ +
Sbjct: 15 PVNFTIKVTGLAQVLLQWKPNPDQEQRNVNLEYQVKINAPKEDD---YETR---ITESKA 68
Query: 543 ISDLTPHTIYTIRVQAFT--SVGPGPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLAW 600
++ L ++R S+ ++ L + +L
Sbjct: 69 VTILHMGFSASVRTILQNDHSLLASSWASAELHAPPGSPGTSIVNLTCT----------- 117
Query: 601 SKPTHSGENIISYELYWNDTYAKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWND 660
T + + + ++ W T + E+ Y LY+
Sbjct: 118 -------------------TNTTEDNYSRLRSYQVSLHCTWMVGTDAPEDT-QYFLYYRY 157
Query: 661 T--------YAKAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTK 712
Y+ R I + + + S
Sbjct: 158 GSWTEECQEYSMDTLGRNIACWFPRTFILSKGRDWLAVLVNGSSKHS-AIRPFDQLFALH 216
Query: 713 QYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLK 772
PP NV+ E T + I WE P H Y+++ + + K
Sbjct: 217 AIDQINPPLNVTAEI-EGTRMSIQWEKPV-SAFPIHCFDYEVKI----HNTRNGYLQIEK 270
Query: 773 NQTSFVLDELKKWTEYRIWV 792
T+ + + ++Y + V
Sbjct: 271 LMTNAFISIIDDLSKYDVQV 290
Score = 48.7 bits (115), Expect = 4e-06
Identities = 13/93 (13%), Positives = 30/93 (32%), Gaps = 5/93 (5%)
Query: 713 QYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLK 772
+ + PP N + + + + W+P P + + Y+++ D E +
Sbjct: 8 EKISLLPPVNFTIKVTGLAQVLLQWKPNPDQEQRNVNLEYQVKINAPKEDDYET-----R 62
Query: 773 NQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSY 805
S + L + + SS+
Sbjct: 63 ITESKAVTILHMGFSASVRTILQNDHSLLASSW 95
Score = 45.6 bits (107), Expect = 4e-05
Identities = 29/285 (10%), Positives = 66/285 (23%), Gaps = 31/285 (10%)
Query: 298 PRDVQVRPLSSSTMVIQWDEPETPNG---------QITAKHHRRIGLVETYSLTGLYPNT 348
P + ++ + +++QW +I A T S +
Sbjct: 15 PVNFTIKVTGLAQVLLQWKPNPDQEQRNVNLEYQVKINAPKEDDYETRITESKAVTILHM 74
Query: 349 LYYIWLAAQSPRGEGAT--------------TPPIPVRTKQYGKTPGFGEQAAKHHRRIG 394
+ + +P + + ++
Sbjct: 75 GFSASVRTILQNDHSLLASSWASAELHAPPGSPGTSIVNLTCTTNTTEDNYSRLRSYQVS 134
Query: 395 LVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYGKTPGFGEQALYPNTLYY 454
L T+ + P Y E + +
Sbjct: 135 LHCTWMVGTDAPEDTQYFLYYRYGSWTEECQEYSMDTLGRNIACWFPRTFILSKGRDWLA 194
Query: 455 IWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETP-NGQIT 513
+ + S + P +V + M IQW++P +
Sbjct: 195 VLVNGSSKHS-AIRPFDQLFALHAIDQINPPLNVTAEI-EGTRMSIQWEKPVSAFPIHCF 252
Query: 514 GYKVYYTQDQSLPMSAWETQVVDNNQLTTISDLTPHTIYTIRVQA 558
Y+V ++ Q+ IS + + Y ++V+A
Sbjct: 253 DYEVKIHNTRN-----GYLQIEKLMTNAFISIIDDLSKYDVQVRA 292
Score = 39.9 bits (92), Expect = 0.003
Identities = 21/142 (14%), Positives = 37/142 (26%), Gaps = 13/142 (9%)
Query: 204 PLDVKISEVTATSVRLDWT-YPSETLLYYVIQYKPKAANTPYSEISGIITTYYTVRNLSP 262
P++ I V L W P + ++Y+ K + IT V L
Sbjct: 15 PVNFTIKVTGLAQVLLQWKPNPDQEQRNVNLEYQVKINAPKEDDYETRITESKAVTILHM 74
Query: 263 YTEYEFYIIAVNNLGRGPPS-SPAVITTGETEPGTAPRDVQ-----------VRPLSSST 310
I N+ S + A + PGT+ ++ +
Sbjct: 75 GFSASVRTILQNDHSLLASSWASAELHAPPGSPGTSIVNLTCTTNTTEDNYSRLRSYQVS 134
Query: 311 MVIQWDEPETPNGQITAKHHRR 332
+ W + R
Sbjct: 135 LHCTWMVGTDAPEDTQYFLYYR 156
Score = 36.4 bits (83), Expect = 0.030
Identities = 14/105 (13%), Positives = 31/105 (29%), Gaps = 12/105 (11%)
Query: 170 NYTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISEVTATSVRLDWTYPSETL- 228
+S I + PL+V E+ T + + W P
Sbjct: 194 AVLVNGSSKHSAIRPFDQLFALHAIDQ----INPPLNVTA-EIEGTRMSIQWEKPVSAFP 248
Query: 229 ---LYYVIQYKPKAANTPYSEISGIITTYYTVRNLSPYTEYEFYI 270
Y ++ Y +I ++T + + ++Y+ +
Sbjct: 249 IHCFDYEVKIHNT--RNGYLQIEKLMTNA-FISIIDDLSKYDVQV 290
Score = 34.5 bits (78), Expect = 0.12
Identities = 28/212 (13%), Positives = 57/212 (26%), Gaps = 25/212 (11%)
Query: 624 PRDLRAVDIQETAVTLAWSKPTHSGEN--IISYELYWNDTYAKAKHHRRIGLVETYSLTG 681
P + V L W + + Y++ N + + E+ ++T
Sbjct: 15 PVNFTIKVTGLAQVLLQWKPNPDQEQRNVNLEYQVKINA---PKEDDYETRITESKAVTI 71
Query: 682 LYPNTLYYI--------------WLAAQSPRGEGATTPPIPVRTKQYVPGAPPQNVSCEP 727
L+ + W +A+ G+ P + N S
Sbjct: 72 LHMGFSASVRTILQNDHSLLASSWASAELHAPPGS--PGTSIVNLTCTTNTTEDNYSRLR 129
Query: 728 LSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFVLDELKKWTE 787
S+ +W + Y ++ E S+ TL + ++
Sbjct: 130 SYQVSLHCTWMVGTDAPEDTQYFLYY-RYGSWTEECQEYSMDTLGRNIACWFPRTFILSK 188
Query: 788 YRIWV---LAGTSIGDGPSSYPITIRTHEDDP 816
R W+ + G+S + H D
Sbjct: 189 GRDWLAVLVNGSSKHSAIRPFDQLFALHAIDQ 220
Score = 31.4 bits (70), Expect = 1.3
Identities = 27/287 (9%), Positives = 70/287 (24%), Gaps = 47/287 (16%)
Query: 116 EVMLDSPLNLSCVAVGSPMPFVKWR--------------KGQNIELTPDDKLPVGRNVLT 161
++ L P+N + G ++W+ + + DD
Sbjct: 9 KISLLPPVNFTIKVTGLAQVLLQWKPNPDQEQRNVNLEYQVKINAPKEDDYETRITESKA 68
Query: 162 LDRVTESENYTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLD-----------VKIS 210
+ + + + ++ +AP + + ++
Sbjct: 69 VTILHMGFSASVRTILQNDHSLLASSWASAELHAPPGSPGTSIVNLTCTTNTTEDNYSRL 128
Query: 211 EVTATSVRLDWTY----PSETLLYYVIQYKPKAANTPYSEISGIITTY-----YTVRNLS 261
S+ W P +T + +Y + + T
Sbjct: 129 RSYQVSLHCTWMVGTDAPEDTQYFLYYRYGSWTEECQEYSMDTLGRNIACWFPRTFILSK 188
Query: 262 PYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEPETP 321
+ + P + P +V + M IQW++P +
Sbjct: 189 GRDWLAVLVNGSSKHSAIRPFDQLFALHAIDQIN-PPLNVTAEI-EGTRMSIQWEKPVSA 246
Query: 322 NGQITAKHHRRI-----------GLVETYSLTGLYPNTLYYIWLAAQ 357
+ +I L+ ++ + + Y + + A
Sbjct: 247 FPIHCFDYEVKIHNTRNGYLQIEKLMTNAFISIIDDLSKYDVQVRAA 293
>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK
protein, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.1.2.1
Length = 120
Score = 71.1 bits (174), Expect = 5e-15
Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 8/105 (7%)
Query: 201 PVAPLDVKISEVTATSVRLDWTYPSE----TLLYYVIQYKPKAANTP---YSEISGIITT 253
P + +VT S+ L W + +++ + + Y I T
Sbjct: 16 LSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIYTGYAT 75
Query: 254 YYTVRNLSPYTEYEFYIIAVNNLGRGPPSSP-AVITTGETEPGTA 297
+ V L P T Y+F + + G S +V TT E+ P +
Sbjct: 76 RHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVATTRESGPSSG 120
Score = 60.0 bits (145), Expect = 4e-11
Identities = 17/112 (15%), Positives = 40/112 (35%), Gaps = 2/112 (1%)
Query: 471 PIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQ-ITGYKVYYT-QDQSLPMS 528
+ + P + P V ++ ++ + WD + Q + ++ +++ M
Sbjct: 5 SSGMEPHKVVPLSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMH 64
Query: 529 AWETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVP 580
++ + L P T+Y R++ + G S V V T +
Sbjct: 65 SYGVIYTGYATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVATTRESG 116
Score = 53.8 bits (129), Expect = 6e-09
Identities = 17/112 (15%), Positives = 41/112 (36%), Gaps = 1/112 (0%)
Query: 706 PIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSE 765
+ + VP + P ++ SI + W+ E+ G + +E
Sbjct: 5 SSGMEPHKVVPLSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMH 64
Query: 766 A-SIVTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDP 816
+ ++ T V++ L+ T Y+ + + G+ S +++ T +
Sbjct: 65 SYGVIYTGYATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVATTRESG 116
Score = 51.1 bits (122), Expect = 6e-08
Identities = 22/106 (20%), Positives = 37/106 (34%), Gaps = 8/106 (7%)
Query: 622 AKPRDLRAVDIQETAVTLAWSKPTHSG-----ENIISYELYWNDTYAKAKHHRRIGLVET 676
+KP + ++ L W E + + + D + G
Sbjct: 17 SKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIYTGYATR 76
Query: 677 YSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQN 722
+ + GL P TLY L SP GE +P + V T + + P +
Sbjct: 77 HVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVATTR---ESGPSS 119
Score = 46.5 bits (110), Expect = 2e-06
Identities = 23/111 (20%), Positives = 39/111 (35%), Gaps = 17/111 (15%)
Query: 282 SSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITAKHHRRI-------- 333
S + + + P + P V ++ ++ + WD + Q + R
Sbjct: 3 SGSSGMEPHKVVPLSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPK 62
Query: 334 ---------GLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQ 375
G + + GL P TLY L SP GE +P + V T +
Sbjct: 63 MHSYGVIYTGYATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVATTR 113
Score = 38.4 bits (89), Expect = 0.001
Identities = 11/49 (22%), Positives = 21/49 (42%)
Query: 849 DVSDGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKTPGGVP 897
+ G A V GL+P T+Y ++ + G+ + S ++ T
Sbjct: 68 VIYTGYATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVATTRESG 116
Score = 28.4 bits (63), Expect = 4.0
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 447 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEP 481
L P TLY L SP GE +P + V T +
Sbjct: 82 LEPRTLYKFRLKVTSPSGEYEYSPVVSVATTRESG 116
>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens}
SCOP: b.1.2.1
Length = 112
Score = 70.4 bits (173), Expect = 8e-15
Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 7/98 (7%)
Query: 201 PVAPLDVKISEVTATSVRLDWTYPSET----LLYYVIQYKPKAANTPYS-EISGIITTYY 255
P +T +V L W P T + Y+++ + S I+ +
Sbjct: 11 IDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEF 70
Query: 256 TVRNLSPYTEYEFYIIAVNNLGR-GPPSSP-AVITTGE 291
TV L+ YEF +IA N G PPS P IT +
Sbjct: 71 TVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCRD 108
Score = 54.3 bits (131), Expect = 3e-09
Identities = 26/102 (25%), Positives = 38/102 (37%), Gaps = 10/102 (9%)
Query: 480 EPGTAPRDVQVRPLSSSTMVIQWDEPETPNG-QITGYKVYYTQDQSLPMSAWETQVVDNN 538
P P ++ T+ ++W +PE G +IT Y V + LP W N
Sbjct: 9 SPIDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEK---RDLPNGRWLKANFSNI 65
Query: 539 QLT--TISDLTPHTIYTIRVQAFTSVG----PGPLSAPVLVK 574
T+S LT Y RV A + G P S + +
Sbjct: 66 LENEFTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCR 107
Score = 51.2 bits (123), Expect = 5e-08
Identities = 18/105 (17%), Positives = 34/105 (32%), Gaps = 9/105 (8%)
Query: 716 PGAPPQNVSCEPLSSTSIRISWEPPPVERSNGH--IVYYKLQFVETGRSDSEASIVTLKN 773
P PP ++ ++ + W P G I Y ++ + + +
Sbjct: 10 PIDPPGKPVPLNITRHTVTLKWAKP---EYTGGFKITSYIVEKRDLPNGRWLKANFSNIL 66
Query: 774 QTSFVLDELKKWTEYRIWVLAGTSIGDG----PSSYPITIRTHED 814
+ F + L + Y V+A + G S IT R +
Sbjct: 67 ENEFTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCRDDVE 111
Score = 35.8 bits (83), Expect = 0.010
Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 5/94 (5%)
Query: 624 PRDLRAVDIQETAVTLAWSKPTHSGEN-IISY--ELYWNDTYAKAKHHRRIGLVETYSLT 680
P ++I VTL W+KP ++G I SY E K + L ++++
Sbjct: 14 PGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEFTVS 73
Query: 681 GLYPNTLYYIWLAAQSPRGEG--ATTPPIPVRTK 712
GL + Y + A++ G + P + +
Sbjct: 74 GLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCR 107
Score = 31.5 bits (72), Expect = 0.28
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 578 GVPSQPRDLRAVDIQETAVTLAWSKPTHSGEN-IISY 613
P +P ++I VTL W+KP ++G I SY
Sbjct: 12 DPPGKPV---PLNITRHTVTLKWAKPEYTGGFKITSY 45
Score = 29.2 bits (66), Expect = 2.0
Identities = 17/100 (17%), Positives = 38/100 (38%), Gaps = 17/100 (17%)
Query: 292 TEPGTAPRDVQVRPLSSSTMVIQWDEPETPNG-QITA--------------KHHRRIGLV 336
+ P P ++ T+ ++W +PE G +IT+ K + L
Sbjct: 8 SSPIDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILE 67
Query: 337 ETYSLTGLYPNTLYYIWLAAQSPRGEG--ATTPPIPVRTK 374
++++GL + Y + A++ G + P + +
Sbjct: 68 NEFTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCR 107
>2crz_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 110
Score = 70.1 bits (172), Expect = 1e-14
Identities = 28/103 (27%), Positives = 41/103 (39%), Gaps = 9/103 (8%)
Query: 201 PVAPLDVKI-SEVTATSVRLDWTYPSET----LLYYVIQYKPKAANTPYSEISGIITTYY 255
P L ++ A ++L W P + Y ++ P + P E+
Sbjct: 9 PGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEP-REVYQGSEVEC 67
Query: 256 TVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAP 298
TV +L P Y F + A N +G GP S IT T PG+ P
Sbjct: 68 TVSSLLPGKTYSFRLRAANKMGFGPFSEKCDIT---TAPGSGP 107
Score = 60.0 bits (146), Expect = 4e-11
Identities = 24/118 (20%), Positives = 46/118 (38%), Gaps = 15/118 (12%)
Query: 466 GATTPPIPVRTKQYEPGTAPRDVQVRPLSSST-MVIQWDEPETPNGQ-ITGYKVYYTQDQ 523
G++ P PG +++ + + ++W P G I+ Y V + +
Sbjct: 1 GSSGSSGP-------PG-PCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIE 52
Query: 524 SLPMSAWETQVVDNNQLT-TISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVP 580
+V +++ T+S L P Y+ R++A +G GP S + T G
Sbjct: 53 K----DEPREVYQGSEVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTAPGSG 106
Score = 56.6 bits (137), Expect = 6e-10
Identities = 24/119 (20%), Positives = 38/119 (31%), Gaps = 16/119 (13%)
Query: 701 GATTPPIPVRTKQYVPGAP-PQNVSCEPLSSTSIRISWEPPPVERSNGH--IVYYKLQFV 757
G++ P PG P + P + I++ W PP +G I Y ++
Sbjct: 1 GSSGSSGP-------PGPCLPPRLQGRP-KAKEIQLRWGPP---LVDGGSPISCYSVEMS 49
Query: 758 ETGRSDSEASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDP 816
E V ++ + L Y + A +G GP S I T
Sbjct: 50 PIE--KDEPREVYQGSEVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTAPGSG 106
Score = 40.8 bits (96), Expect = 2e-04
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 850 VSDGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKT-PGGVP 897
V G +E V+ L P Y+ ++ A + G G S+ I T PG P
Sbjct: 59 VYQGSEVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTAPGSGP 107
Score = 39.6 bits (93), Expect = 4e-04
Identities = 19/101 (18%), Positives = 32/101 (31%), Gaps = 5/101 (4%)
Query: 624 PRDLRAVD-IQETAVTLAWSKPTHSGEN-IISYELYWNDTYAKAKHHRRIGLVETYSLTG 681
R + + L W P G + I Y + + G +++
Sbjct: 12 CLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQGSEVECTVSS 71
Query: 682 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQN 722
L P Y L A + G G + + T PG+ P +
Sbjct: 72 LLPGKTYSFRLRAANKMGFGPFSEKCDITTA---PGSGPSS 109
Score = 31.9 bits (73), Expect = 0.24
Identities = 16/100 (16%), Positives = 34/100 (34%), Gaps = 14/100 (14%)
Query: 288 TTGETEPGTAPRDVQVRPLSSST-MVIQWDEPETPNGQ-IT----------AKHHRRI-- 333
++G + P +++ + + ++W P G I+ R +
Sbjct: 2 SSGSSGPPGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQ 61
Query: 334 GLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRT 373
G +++ L P Y L A + G G + + T
Sbjct: 62 GSEVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITT 101
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 68.5 bits (168), Expect = 3e-14
Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 4/93 (4%)
Query: 102 RVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRK-GQNIELTPDDKLPVGRNVL 160
RV P + + +SC A G+P P + W K + + L G L
Sbjct: 8 RVAPTI-TGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNL 66
Query: 161 TLDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
T+ RV + + YTC A SVLG + ++
Sbjct: 67 TIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIE 99
>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor
complex LIFR LIF, cytokine RE cytokine complex; HET: NAG
FUC MAN; 4.00A {Mus musculus}
Length = 488
Score = 75.4 bits (184), Expect = 3e-14
Identities = 30/203 (14%), Positives = 64/203 (31%), Gaps = 15/203 (7%)
Query: 622 AKPRDLRAVDIQETAVTLAWSKPTHSGEN---IISYELYWNDTYAKAKHHRRIGLVETYS 678
P+ L + +W+ +G Y L+ + + A HR GL
Sbjct: 288 DVPQKLSCETHDLKEIICSWNPGRITGLVGPRNTEYTLFESISGKSAVFHRIEGLTNETY 347
Query: 679 ---LTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRI 735
+ ++ L ++P G+ + + + V P ++ + ++ST +
Sbjct: 348 RLGVQMHPGQEIHNFTLTGRNPLGQ--AQSAVVINVTERVAPHDPTSLKVKDINSTVVTF 405
Query: 736 SWEPPPVERSNGHIVYYKLQFVETGRSDSEAS---IVTLKNQTSFVLDELKKWTEYRIWV 792
SW P + +++ + + + +D+L +T Y V
Sbjct: 406 SWYLPG--NFTKINLLCQIEICKANSKKEVRNATIRGAEDSTYHVAVDKLNPYTAYTFRV 463
Query: 793 LAGTSIGDGPS--SYPITIRTHE 813
+ S S T E
Sbjct: 464 RCSSKTFWKWSRWSDEKRHLTTE 486
Score = 65.8 bits (159), Expect = 3e-11
Identities = 62/449 (13%), Positives = 125/449 (27%), Gaps = 64/449 (14%)
Query: 201 PVAPLDVKISEVTATSVRLDWTYPSET---LLYYVIQYKPKAANTPYSEISGIITTYYTV 257
D+K + W P + + + P T +
Sbjct: 4 DDDDKDLKCTTNNMRVWDCTWPAPLGVSPGTVKDICIKDRFHSCHPLET------TNVKI 57
Query: 258 RNLSPYTEYEFYIIAVNNLG-RGPPSSPAVITTGETEPGTAPRDVQVRPLSS-STMVIQW 315
LSP ++E I +N + + V P T P + + S+++++W
Sbjct: 58 PALSP-GDHEVTINYLNGFQSKFTLNEKDVSLI----PET-PEILDLSADFFTSSLLLKW 111
Query: 316 DEPETPNGQITAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQ 375
++ + T+ + L + L + T +
Sbjct: 112 NDRGSALPH---------PSNATWEIKVLQNPRTEPVALVLLN------TMLSGKDTVQH 156
Query: 376 YGKTPGFGEQAAKHHRRI-GLVETYSLTGLYPNTLY-YIWLAAQSPRGEGATTPPIPV-- 431
+ T Q A H I +++ +G + + + + E P V
Sbjct: 157 WNWTSDLPLQCATHSVSIRWHIDSPHFSGYKEWSDWSPLKNISWIRNTETNVFPQDKVVL 216
Query: 432 ---------------RTKQYGKTPGFGEQALYPNTLYYIWLAAQSPRGEG-------ATT 469
+ Q G T LY T+ L G
Sbjct: 217 AGSNMTICCMSPTKVLSGQIGNTLRPLIH-LYGQTVAIHILNIPVSENSGTNIIFITDDD 275
Query: 470 PPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPN---GQITGYKVYYTQDQSLP 526
V Y P P+ + ++ W+ + T Y ++ +
Sbjct: 276 VYGTVVFAGYPPD-VPQKLSCETHDLKEIICSWNPGRITGLVGPRNTEYTLFESISGKSA 334
Query: 527 MSAWETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPSQPRDL 586
+ + + + I+ + +G SA V+ T++ P P L
Sbjct: 335 VFHRIEGLTNETYRLGVQMHPGQEIHNFTLTGRNPLGQAQ-SAVVINVTERVAPHDPTSL 393
Query: 587 RAVDIQETAVTLAWSKPTHSGENIISYEL 615
+ DI T VT +W P + + + ++
Sbjct: 394 KVKDINSTVVTFSWYLPGNFTKINLLCQI 422
Score = 64.6 bits (156), Expect = 7e-11
Identities = 37/288 (12%), Positives = 78/288 (27%), Gaps = 42/288 (14%)
Query: 99 PVRRVPPQFSIPP---PALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPV 155
P++ + + P V+ S + + C++ + + + + +
Sbjct: 194 PLKNISWIRNTETNVFPQDKVVLAGSNMTICCMSPTKVLSGQIGNTLRPLIHLYGQTVAI 253
Query: 156 GRNVLTLDRVTESENYTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISEVTAT 215
+ + + + V G + + P P +
Sbjct: 254 HILNIPVSENSGTNIIFITDDDVYGTVVFAGYP------------PDVPQKLSCETHDLK 301
Query: 216 SVRLDWTYPSETLLY------YVIQYKPKAANTPYSEISGII--TTYYTVRNLSPYTEYE 267
+ W T L Y + + + I G+ T V+ +
Sbjct: 302 EIICSWNPGRITGLVGPRNTEYTLFESISGKSAVFHRIEGLTNETYRLGVQMHPGQEIHN 361
Query: 268 FYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQI-- 325
F + N LG+ S VI E P ++V+ ++S+ + W P
Sbjct: 362 FTLTGRNPLGQ--AQSAVVINVTERVAPHDPTSLKVKDINSTVVTFSWYLPGNFTKINLL 419
Query: 326 -----------TAKHHRRIGLVET----YSLTGLYPNTLYYIWLAAQS 358
+ I E ++ L P T Y + S
Sbjct: 420 CQIEICKANSKKEVRNATIRGAEDSTYHVAVDKLNPYTAYTFRVRCSS 467
Score = 61.9 bits (149), Expect = 5e-10
Identities = 20/136 (14%), Positives = 43/136 (31%), Gaps = 6/136 (4%)
Query: 445 QALYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDE 504
Q ++ L ++P G+ + + + P ++V+ ++S+ + W
Sbjct: 352 QMHPGQEIHNFTLTGRNPLGQ--AQSAVVINVTERVAPHDPTSLKVKDINSTVVTFSWYL 409
Query: 505 PETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLT--TISDLTPHTIYTIRVQAFT-- 560
P ++ + S T + + L P+T YT RV+ +
Sbjct: 410 PGNFTKINLLCQIEICKANSKKEVRNATIRGAEDSTYHVAVDKLNPYTAYTFRVRCSSKT 469
Query: 561 SVGPGPLSAPVLVKTQ 576
S T
Sbjct: 470 FWKWSRWSDEKRHLTT 485
Score = 58.0 bits (139), Expect = 7e-09
Identities = 36/207 (17%), Positives = 58/207 (28%), Gaps = 23/207 (11%)
Query: 709 VRTKQYVPGAPPQNVSCEPLSSTSIRISWEPP-PVERSNGHIVYYKLQFVETGRSDSEAS 767
V Y P PQ +SCE I SW P Y L +G+S
Sbjct: 280 VVFAGYPPD-VPQKLSCETHDLKEIICSWNPGRITGLVGPRNTEYTLFESISGKSAVFHR 338
Query: 768 IVTLKNQTSFV-LDELKKWTEYRIWVLAGTSIGDGPSSYPITI--RTHEDDPSEVCPTQN 824
I L N+T + + + + +G S+ I + R DP+ +
Sbjct: 339 IEGLTNETYRLGVQMHPGQEIHNFTLTGRNPLGQAQSAVVINVTERVAPHDPTSLKVKDI 398
Query: 825 DFRK-----NKKTNGSNFKGGYL-----------NDPMRFDVSDGGALELNVTGLQPDTI 868
+ N + ++ + V L P T
Sbjct: 399 NSTVVTFSWYLPGNFTKINLLCQIEICKANSKKEVRNATIRGAEDSTYHVAVDKLNPYTA 458
Query: 869 YTIQVAALTRKGD--GDRSKPETIKTP 893
YT +V ++ S + T
Sbjct: 459 YTFRVRCSSKTFWKWSRWSDEKRHLTT 485
Score = 46.9 bits (110), Expect = 2e-05
Identities = 22/197 (11%), Positives = 56/197 (28%), Gaps = 20/197 (10%)
Query: 621 YAKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVETYSLT 680
+DL+ W P + + H +
Sbjct: 4 DDDDKDLKCTTNNMRVWDCTWPAPLGVSPGTV-----KDICIKDRFHSCHPLETTNVKIP 58
Query: 681 GLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTS-IRISWEP 739
L P + + + + +P P+ + TS + + W
Sbjct: 59 ALSPGDHEVTI----NYLNGFQSKFTLNEKDVSLIPE-TPEILDLSADFFTSSLLLKWND 113
Query: 740 PPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSIG 799
+ ++++ ++ R++ A ++ N D ++ W + +
Sbjct: 114 RGSALPHPSNATWEIKVLQNPRTEPVALVLL--NTMLSGKDTVQHWN-------WTSDLP 164
Query: 800 DGPSSYPITIRTHEDDP 816
+++ ++IR H D P
Sbjct: 165 LQCATHSVSIRWHIDSP 181
Score = 31.1 bits (69), Expect = 2.1
Identities = 15/127 (11%), Positives = 32/127 (25%), Gaps = 14/127 (11%)
Query: 479 YEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNN 538
Y+ +D++ + W P + + S
Sbjct: 2 YKDD-DDKDLKCTTNNMRVWDCTWPAPLGVSPGTVKDICIKDRFHSCHPLETTN------ 54
Query: 539 QLTTISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPSQPRDLRA-VDIQETAVT 597
I L+P + + + + K +P P L D +++
Sbjct: 55 --VKIPALSPGD-HEVTINYLNGFQS---KFTLNEKDVSLIPETPEILDLSADFFTSSLL 108
Query: 598 LAWSKPT 604
L W+
Sbjct: 109 LKWNDRG 115
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 71.1 bits (174), Expect = 4e-14
Identities = 18/118 (15%), Positives = 43/118 (36%), Gaps = 4/118 (3%)
Query: 76 ARLAAQSVLRRGRLAHAVRQVADPVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMP 135
+ + + + + P + + ++ + L C A+G+P+P
Sbjct: 85 VSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDV-YALMGQNVTLECFALGNPVP 143
Query: 136 FVKWRKGQNIELTPDDKLPVGRNVLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
++WRK + ++ VL + + + Y C A ++ G + + VQ
Sbjct: 144 DIRWRKV-LEPMPSTAEISTSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQ 200
Score = 41.0 bits (96), Expect = 7e-04
Identities = 21/124 (16%), Positives = 37/124 (29%), Gaps = 11/124 (8%)
Query: 107 FSIPPPALLEVMLDSPLNLSCVAVGSPMP--FVKWRK-GQNIELTPDDK--LPVGRNVLT 161
F + V + L C +W + +T D + + L
Sbjct: 10 FPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLY 69
Query: 162 LDRVTESE--NYTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAP-LDVKISEVTA---T 215
+ V S+ NY+C +S + T P + V+ +V A
Sbjct: 70 IANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQ 129
Query: 216 SVRL 219
+V L
Sbjct: 130 NVTL 133
>4doh_R Interleukin-20 receptor subunit alpha; IL10 family cytokine
receptor complex, alpha helical cytokin beta sandwhich
receptor fold, signaling complex; HET: NAG; 2.80A {Homo
sapiens}
Length = 221
Score = 71.0 bits (173), Expect = 6e-14
Identities = 29/210 (13%), Positives = 53/210 (25%), Gaps = 14/210 (6%)
Query: 622 AKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYW-----NDTYAKAKHHRRIGLVET 676
KP ++ L W+ P ++Y + + K++
Sbjct: 10 PKPANIT-FLSINMKNVLQWTPPEGLQGVKVTYTVQYFIYGQKKWLNKSECRNINRTYCD 68
Query: 677 YSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRIS 736
S YY + A PP+ S S+ ++
Sbjct: 69 LSAETSDYEHQYYARVRAIWGTKCSKWAESGRFYPFLETQIGPPEVALTTDEKSISVVLT 128
Query: 737 WEPPPVERSNGHIVYYKLQF------VETGRSDSEASIVTLKNQTSFVLDELKKWTEYRI 790
V + + V + S + + VL L+ T Y +
Sbjct: 129 APEKWKRNPEDLPVSMQQIYSNLKYNVSVLNTKSNRTWSQCVTNHTLVLTWLEPNTLYCV 188
Query: 791 WVLAGTSIGDGPS--SYPITIRTHEDDPSE 818
V + + S RT +D S
Sbjct: 189 HVESFVPGPPRRAQPSEKQCARTLKDQSSI 218
Score = 56.4 bits (135), Expect = 6e-09
Identities = 38/235 (16%), Positives = 67/235 (28%), Gaps = 41/235 (17%)
Query: 484 APRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLTTI 543
P ++ ++ V+QW PE G Y V Y W + N T
Sbjct: 11 KPANITFLSINMKN-VLQWTPPEGLQGVKVTYTVQY---FIYGQKKWLNKSECRNINRTY 66
Query: 544 SDLT-----PHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTL 598
DL+ Y RV+A + P ++ + E ++++
Sbjct: 67 CDLSAETSDYEHQYYARVRAIWGTKCSKWAESGRFYPFLETQIGPPEVA-LTTDEKSISV 125
Query: 599 AWSKPTHSGENIISYELYWNDTYAKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYW 658
+ P N + Y + + Y +
Sbjct: 126 VLTAPEKWKRNPEDLPVSMQQIY----------------------------SNLKYNVSV 157
Query: 659 NDTYAKAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPR--GEGATTPPIPVRT 711
+T + + + T LT L PNTLY + + + P + RT
Sbjct: 158 LNTKSNRTWSQCVT-NHTLVLTWLEPNTLYCVHVESFVPGPPRRAQPSEKQCART 211
Score = 51.0 bits (121), Expect = 4e-07
Identities = 26/152 (17%), Positives = 42/152 (27%), Gaps = 21/152 (13%)
Query: 447 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPE 506
YY + A E P +V + S V PE
Sbjct: 74 SDYEHQYYARVRAIWGTKCSKWAESGRFYPFL-ETQIGPPEVALTTDEKSISV-VLTAPE 131
Query: 507 TPNGQITG-------------YKVYYTQDQSLPMSAWETQVVDNNQLTTISDLTPHTIYT 553
Y V +S + +Q V N+ L ++ L P+T+Y
Sbjct: 132 KWKRNPEDLPVSMQQIYSNLKYNVSVLNTKS---NRTWSQCVTNHTLV-LTWLEPNTLYC 187
Query: 554 IRVQAFTSV--GPGPLSAPVLVKTQQGVPSQP 583
+ V++F S +T + S
Sbjct: 188 VHVESFVPGPPRRAQPSEKQCARTLKDQSSIE 219
Score = 45.6 bits (107), Expect = 3e-05
Identities = 33/202 (16%), Positives = 54/202 (26%), Gaps = 32/202 (15%)
Query: 203 APLDVKISEVTATSVRLDWTYPSET---LLYYVIQYKPKAANT--PYSEISGIITTY--Y 255
P ++ + L WT P + Y +QY SE I TY
Sbjct: 11 KPANITFLSIN-MKNVLQWTPPEGLQGVKVTYTVQYFIYGQKKWLNKSECRNINRTYCDL 69
Query: 256 TVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQW 315
+ +Y + A+ + P S ++V+
Sbjct: 70 SAETSDYEHQYYARVRAIWGTKCSKWAESGRFYPFLETQIGPPEVALTTDEKSISVVLTA 129
Query: 316 DEPETPNGQITAKHHRRIGLVETYS----------------------LTGLYPNTLYYIW 353
E N + ++I Y+ LT L PNTLY +
Sbjct: 130 PEKWKRNPEDLPVSMQQIYSNLKYNVSVLNTKSNRTWSQCVTNHTLVLTWLEPNTLYCVH 189
Query: 354 LAAQSPR--GEGATTPPIPVRT 373
+ + P + RT
Sbjct: 190 VESFVPGPPRRAQPSEKQCART 211
Score = 45.6 bits (107), Expect = 3e-05
Identities = 28/206 (13%), Positives = 55/206 (26%), Gaps = 33/206 (16%)
Query: 718 APPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSD---SEASIVTLKNQ 774
P N++ ++ ++ + W PP G V Y +Q+ G+ +
Sbjct: 10 PKPANITFLSINMKNV-LQWTPPE--GLQGVKVTYTVQYFIYGQKKWLNKSECRNINRTY 66
Query: 775 TSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHED-------------------- 814
+ +Y V A + +
Sbjct: 67 CDLSAETSDYEHQYYARVRAIWGTKCSKWAESGRFYPFLETQIGPPEVALTTDEKSISVV 126
Query: 815 --DPSEVCPTQNDFRKNKKTNGSNFK---GGYLNDPMRFDVSDGGALELNVTGLQPDTIY 869
P + D + + SN K R L +T L+P+T+Y
Sbjct: 127 LTAPEKWKRNPEDLPVSMQQIYSNLKYNVSVLNTKSNRTWSQCVTNHTLVLTWLEPNTLY 186
Query: 870 TIQVAALT--RKGDGDRSKPETIKTP 893
+ V + S+ + +T
Sbjct: 187 CVHVESFVPGPPRRAQPSEKQCARTL 212
Score = 38.7 bits (89), Expect = 0.004
Identities = 23/158 (14%), Positives = 47/158 (29%), Gaps = 23/158 (14%)
Query: 160 LTLDRVTESENYTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISEVTATSVRL 219
L+ + Y ++ G + ++ P L + P +V ++ S+ +
Sbjct: 69 LSAETSDYEHQYYARVRAIWGTKCSKW--AESGRFYPFLETQIGPPEVALT-TDEKSISV 125
Query: 220 DWTYPSETL----------------LYYVIQYKPKAANTPYSEISGIITTYYTVRNLSPY 263
T P + L Y + +N +S+ + L P
Sbjct: 126 VLTAPEKWKRNPEDLPVSMQQIYSNLKYNVSVLNTKSNRTWSQCVT--NHTLVLTWLEPN 183
Query: 264 TEYEFYIIAVNNL--GRGPPSSPAVITTGETEPGTAPR 299
T Y ++ + R PS T + + R
Sbjct: 184 TLYCVHVESFVPGPPRRAQPSEKQCARTLKDQSSIEGR 221
>1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic
cytokine, cytokine receptor class 1, complex
(cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A
Length = 227
Score = 70.5 bits (172), Expect = 1e-13
Identities = 44/262 (16%), Positives = 72/262 (27%), Gaps = 45/262 (17%)
Query: 563 GPGPLSAPVLVKTQQGV-PSQPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTY 621
P P P + P +L + + W + +G Y +
Sbjct: 3 FPPPNPDPKFESKAALLAARGPEELLCFTERLEDLVCFWEEAASAGVGPGQYSFSY---- 58
Query: 622 AKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVETYSLTG 681
E L+ T A +
Sbjct: 59 -----------------------QLEDEPWKLCRLHQAPTARGAVRF-----WCSLPTAD 90
Query: 682 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTS-IRISWEPP 740
+ + A S GA + + V P + + + + W PP
Sbjct: 91 TSSFVPLELRVTAAS----GAPRYHRVIHINEVVLLDAPVGLVARLADESGHVVLRWLPP 146
Query: 741 PVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFVLDELKKWTEYRIWV---LAGTS 797
P HI Y ++ + S + L+ +T VL L+ T Y V +A S
Sbjct: 147 PETPMTSHIRY-EVDVSAGQGAGSVQRVEILEGRTECVLSNLRGRTRYTFAVRARMAEPS 205
Query: 798 IGDGPS--SYPITIRTHED-DP 816
G S S P+++ T D DP
Sbjct: 206 FGGFWSEWSEPVSLLTPSDLDP 227
Score = 57.0 bits (137), Expect = 4e-09
Identities = 28/221 (12%), Positives = 56/221 (25%), Gaps = 30/221 (13%)
Query: 702 ATTPPIPVRTKQ-YVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETG 760
P +K + P+ + C + WE + Y +
Sbjct: 5 PPNPDPKFESKAALLAARGPEELLCFTERLEDLVCFWEEA--ASAGVGPGQYSFSYQLED 62
Query: 761 RSDSEASIV-------TLKNQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHE 813
+ ++ S + + + V A + I
Sbjct: 63 EPWKLCRLHQAPTARGAVRFWCSLPTADTSSFVPLELRVTAASGAPRYHRVIHINEVVLL 122
Query: 814 DDPSEVCPTQNDFRKNKKTNGSNFKGGYLNDPMRFDV---------------SDGGALEL 858
D P + D + + +R++V G E
Sbjct: 123 DAPVGLVARLADESGHVVLRWLPPPETPMTSHIRYEVDVSAGQGAGSVQRVEILEGRTEC 182
Query: 859 NVTGLQPDTIYTIQVAALTRKGD-----GDRSKPETIKTPG 894
++ L+ T YT V A + + S+P ++ TP
Sbjct: 183 VLSNLRGRTRYTFAVRARMAEPSFGGFWSEWSEPVSLLTPS 223
Score = 54.7 bits (131), Expect = 2e-08
Identities = 25/157 (15%), Positives = 42/157 (26%), Gaps = 13/157 (8%)
Query: 469 TPPIPVRTKQYE--PGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLP 526
P P + P ++ +V W+E + Y Y +
Sbjct: 6 PNPDPKFESKAALLAARGPEELLCFTERLEDLVCFWEEAASAGVGPGQYSFSYQLEDEPW 65
Query: 527 MSAWETQVVDNNQLTTIS------DLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVP 580
Q D + +RV A + V+ + +
Sbjct: 66 KLCRLHQAPTARGAVRFWCSLPTADTSSFVPLELRVTAASGAP---RYHRVIHINEVVLL 122
Query: 581 SQPRDLRAVDIQET-AVTLAWSKPTHSG-ENIISYEL 615
P L A E+ V L W P + + I YE+
Sbjct: 123 DAPVGLVARLADESGHVVLRWLPPPETPMTSHIRYEV 159
Score = 49.3 bits (117), Expect = 1e-06
Identities = 28/153 (18%), Positives = 50/153 (32%), Gaps = 10/153 (6%)
Query: 408 TLYYIWLAAQSPRGEGATTPPIPVRTKQYGKTPGFGEQALYPNTLYYIWLAAQSPRGEGA 467
+ Y L + + P ++ + + + A S GA
Sbjct: 55 SFSY-QLEDEPWKLCRLHQAPTARGAVRFWCS--LPTADTSSFVPLELRVTAAS----GA 107
Query: 468 TTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMV-IQWDEP-ETPNGQITGYKVYYTQDQSL 525
+ + AP + R S V ++W P ETP Y+V + Q
Sbjct: 108 PRYHRVIHINEVVLLDAPVGLVARLADESGHVVLRWLPPPETPMTSHIRYEVDVSAGQG- 166
Query: 526 PMSAWETQVVDNNQLTTISDLTPHTIYTIRVQA 558
S ++++ +S+L T YT V+A
Sbjct: 167 AGSVQRVEILEGRTECVLSNLRGRTRYTFAVRA 199
Score = 40.5 bits (94), Expect = 0.001
Identities = 27/201 (13%), Positives = 52/201 (25%), Gaps = 33/201 (16%)
Query: 184 TSTIVKVQCKYAPLLTLPVAPLDVKISEVTATSVRLDWTYPSETLLY---YVIQYKPKAA 240
+ K + K A L P ++ + W + + Y Y+ +
Sbjct: 6 PNPDPKFESKAALLA--ARGPEELLCFTERLEDLVCFWEEAASAGVGPGQYSFSYQLEDE 63
Query: 241 NT--------PYSEISGIITTYYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGET 292
P + + + S + E + A + VI E
Sbjct: 64 PWKLCRLHQAPTARGAVRFWCSLPTADTSSFVPLELRVTAASGAP----RYHRVIHINEV 119
Query: 293 EPGTAPRDVQVRPLSSSTMV-IQWDEPETPNGQITAKHHRRIGLVET------------- 338
AP + R S V ++W P ++ + +
Sbjct: 120 VLLDAPVGLVARLADESGHVVLRWLPPPETPMTSHIRYEVDVSAGQGAGSVQRVEILEGR 179
Query: 339 --YSLTGLYPNTLYYIWLAAQ 357
L+ L T Y + A+
Sbjct: 180 TECVLSNLRGRTRYTFAVRAR 200
>2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 112
Score = 66.9 bits (163), Expect = 2e-13
Identities = 14/104 (13%), Positives = 35/104 (33%), Gaps = 9/104 (8%)
Query: 201 PVAPLDVKISEVTATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEISGII--------- 251
+ +++VT +S+RL+W P +++++ + +T ++
Sbjct: 9 RPRLSQLSVTDVTTSSLRLNWEAPPGAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGT 68
Query: 252 TTYYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPG 295
+R+L T Y + + + T G
Sbjct: 69 RHSAVLRDLRSGTLYSLTLYGLRGPHKADSIQGTARTLSGPSSG 112
Score = 48.0 bits (114), Expect = 6e-07
Identities = 16/109 (14%), Positives = 35/109 (32%), Gaps = 11/109 (10%)
Query: 480 EPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYT-------QDQSLPMSAWET 532
+ V +++S++ + W+ P G + + + + P+ E
Sbjct: 7 GSRPRLSQLSVTDVTTSSLRLNWEAPP---GAFDSFLLRFGVPSPSTLEPHPRPLLQREL 63
Query: 533 QVVDNNQLTTISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPS 581
V + DL T+Y++ + S +T G S
Sbjct: 64 MVPGTRHSAVLRDLRSGTLYSLTLYGLRGPHKAD-SIQGTARTLSGPSS 111
Score = 45.4 bits (107), Expect = 5e-06
Identities = 21/122 (17%), Positives = 39/122 (31%), Gaps = 14/122 (11%)
Query: 699 GEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVE 758
G ++ P +S ++++S+R++WE PP + + +
Sbjct: 1 GSSGSSGSRP----------RLSQLSVTDVTTSSLRLNWEAPPGAFDSFLLRFGVPSPST 50
Query: 759 TGRSDSEASIVTLK---NQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDD 815
L + S VL +L+ T Y + + S T RT
Sbjct: 51 LEPHPRPLLQRELMVPGTRHSAVLRDLRSGTLYSLTLYGLRGPHKADSIQ-GTARTLSGP 109
Query: 816 PS 817
S
Sbjct: 110 SS 111
Score = 40.3 bits (94), Expect = 3e-04
Identities = 16/99 (16%), Positives = 31/99 (31%), Gaps = 13/99 (13%)
Query: 623 KPRDLRAVDIQETAVTLAWSKPTHSGEN-IISYELYWNDTYAKAKHHRRI------GLVE 675
+ L D+ +++ L W P + ++ ++ + + T G
Sbjct: 11 RLSQLSVTDVTTSSLRLNWEAPPGAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGTRH 70
Query: 676 TYSLTGLYPNTLYYIWLAAQSPRGEG------ATTPPIP 708
+ L L TLY + L + A T P
Sbjct: 71 SAVLRDLRSGTLYSLTLYGLRGPHKADSIQGTARTLSGP 109
Score = 38.8 bits (90), Expect = 9e-04
Identities = 15/108 (13%), Positives = 31/108 (28%), Gaps = 25/108 (23%)
Query: 288 TTGETEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQ-------------------ITAK 328
++G + + V +++S++ + W+ P + +
Sbjct: 2 SSGSSGSRPRLSQLSVTDVTTSSLRLNWEAPPGAFDSFLLRFGVPSPSTLEPHPRPLLQR 61
Query: 329 HHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEG------ATTPPIP 370
G + L L TLY + L + A T P
Sbjct: 62 ELMVPGTRHSAVLRDLRSGTLYSLTLYGLRGPHKADSIQGTARTLSGP 109
Score = 29.9 bits (67), Expect = 1.1
Identities = 8/52 (15%), Positives = 17/52 (32%)
Query: 832 TNGSNFKGGYLNDPMRFDVSDGGALELNVTGLQPDTIYTIQVAALTRKGDGD 883
+ S + R + G + L+ T+Y++ + L D
Sbjct: 46 PSPSTLEPHPRPLLQRELMVPGTRHSAVLRDLRSGTLYSLTLYGLRGPHKAD 97
>3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor,
antibody FAB F immunoglobulin fold; HET: NAG; 1.95A
{Homo sapiens}
Length = 206
Score = 69.3 bits (169), Expect = 2e-13
Identities = 31/190 (16%), Positives = 58/190 (30%), Gaps = 19/190 (10%)
Query: 630 VDIQETAVTLAWS--KPTHSGENIISYELYWNDTYAKAKH-----------HRRIGLVET 676
D T +T WS E+ + + + Y + +
Sbjct: 11 TDGYLTKMTCRWSTSTIQSLAESTLQLRYHRSSLYCSDIPSIHPISEPKDCYLQSDGFYE 70
Query: 677 YSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTS-IRI 735
++ + Y +W+ G +PP V V PP +V E + ++I
Sbjct: 71 CIFQPIFLLSGYTMWIRINHSLGS-LDSPPTCVLPDSVVKPLPPSSVKAEITINIGLLKI 129
Query: 736 SWEPPPVERSNGHIVYYKLQF-VETGRSDSEASIVTLKNQTSFVLDELKKWTEYRIWVLA 794
SWE P + + +++++ + + V S L Y + V
Sbjct: 130 SWEKPV---FPENNLQFQIRYGLSGKEVQWKMYEVYDAKSKSVSLPVPDLCAVYAVQVRC 186
Query: 795 GTSIGDGPSS 804
G G S
Sbjct: 187 KRLDGLGYWS 196
Score = 60.9 bits (147), Expect = 1e-10
Identities = 21/127 (16%), Positives = 46/127 (36%), Gaps = 7/127 (5%)
Query: 445 QALYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMV-IQWD 503
Q ++ + Y +W+ G +PP V P V+ + ++ I W+
Sbjct: 74 QPIFLLSGYTMWIRINHSLGS-LDSPPTCVLPDSVVKPLPPSSVKAEITINIGLLKISWE 132
Query: 504 EPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLT--TISDLTPHTIYTIRVQAFTS 561
+P P + +++ Y W+ V + + ++ +Y ++V+
Sbjct: 133 KPVFPENNLQ-FQIRYGLSGK--EVQWKMYEVYDAKSKSVSLPVPDLCAVYAVQVRCKRL 189
Query: 562 VGPGPLS 568
G G S
Sbjct: 190 DGLGYWS 196
Score = 56.6 bits (136), Expect = 4e-09
Identities = 26/194 (13%), Positives = 53/194 (27%), Gaps = 33/194 (17%)
Query: 719 PPQNVSCE-PLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQ--- 774
N+SCE T + W + + +L++ + S+ + ++
Sbjct: 3 VNINISCETDGYLTKMTCRWSTSTI--QSLAESTLQLRYHRSSLYCSDIPSIHPISEPKD 60
Query: 775 --------TSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHED---DPSE---VC 820
+ + + Y +W+ S+G S P + P
Sbjct: 61 CYLQSDGFYECIFQPIFLLSGYTMWIRINHSLGSL-DSPPTCVLPDSVVKPLPPSSVKAE 119
Query: 821 PTQNDFRKNKKTNGSNFKGGYL------------NDPMRFDVSDGGALELNVTGLQPDTI 868
T N F L ++V D + +++ +
Sbjct: 120 ITINIGLLKISWEKPVFPENNLQFQIRYGLSGKEVQWKMYEVYDAKSKSVSLPVPDLCAV 179
Query: 869 YTIQVAALTRKGDG 882
Y +QV G G
Sbjct: 180 YAVQVRCKRLDGLG 193
Score = 50.5 bits (120), Expect = 5e-07
Identities = 22/191 (11%), Positives = 53/191 (27%), Gaps = 32/191 (16%)
Query: 204 PLDVK-ISEVTATSVRLDWTYPSETLL---YYVIQYKPKAANTPYSE------------I 247
+++ ++ T + W+ + L ++Y + +
Sbjct: 4 NINISCETDGYLTKMTCRWSTSTIQSLAESTLQLRYHRSSLYCSDIPSIHPISEPKDCYL 63
Query: 248 SGIITTYYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLS 307
+ + + Y +I ++LG S P + P V+
Sbjct: 64 QSDGFYECIFQPIFLLSGYTMWIRINHSLGSL-DSPPTCVLPDSVVKPLPPSSVKAEITI 122
Query: 308 SSTMV-IQWDEPETPNGQIT-------------AKHHRRIGLVET-YSLTGLYPNTLYYI 352
+ ++ I W++P P + K + SL +Y +
Sbjct: 123 NIGLLKISWEKPVFPENNLQFQIRYGLSGKEVQWKMYEVYDAKSKSVSLPVPDLCAVYAV 182
Query: 353 WLAAQSPRGEG 363
+ + G G
Sbjct: 183 QVRCKRLDGLG 193
Score = 48.9 bits (116), Expect = 2e-06
Identities = 17/96 (17%), Positives = 29/96 (30%), Gaps = 7/96 (7%)
Query: 201 PVAPLDVKISEVTATS-VRLDWTYPS--ETLLYYVIQYKPKAANTPYS--EISGIITTYY 255
P+ P VK +++ W P E L + I+Y + E+ +
Sbjct: 110 PLPPSSVKAEITINIGLLKISWEKPVFPENNLQFQIRYGLSGKEVQWKMYEVYDAKSKSV 169
Query: 256 TVRNLSPYTEYEFYIIAVNNLGRGPPS--SPAVITT 289
++ Y + G G S S T
Sbjct: 170 SLPVPDLCAVYAVQVRCKRLDGLGYWSNWSNPAYTV 205
Score = 47.0 bits (111), Expect = 6e-06
Identities = 29/219 (13%), Positives = 65/219 (29%), Gaps = 52/219 (23%)
Query: 495 SSTMVIQWDEPETPNGQITGYKVYY--------TQDQSLPMSAWETQVVDNNQLT--TIS 544
+ M +W + + ++ Y P+S + + ++
Sbjct: 15 LTKMTCRWSTSTIQSLAESTLQLRYHRSSLYCSDIPSIHPISEPKDCYLQSDGFYECIFQ 74
Query: 545 DLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGV-PSQPRDLRAVDIQET-AVTLAWSK 602
+ + YT+ ++ S+G S P V V P P ++A + ++W K
Sbjct: 75 PIFLLSGYTMWIRINHSLGSLD-SPPTCVLPDSVVKPLPPSSVKAEITINIGLLKISWEK 133
Query: 603 PTHSGENIISYELYWNDTYAKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTY 662
P EN + +++ + + YE+Y +
Sbjct: 134 P-VFPENNLQFQIRY-------------------------GLSGKEVQWKMYEVYDAKS- 166
Query: 663 AKAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEG 701
++ SL +Y + + + G G
Sbjct: 167 ------------KSVSLPVPDLCAVYAVQVRCKRLDGLG 193
>3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain,
cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond,
glycoprotein, membrane; 2.14A {Homo sapiens}
Length = 201
Score = 69.0 bits (168), Expect = 2e-13
Identities = 32/207 (15%), Positives = 68/207 (32%), Gaps = 21/207 (10%)
Query: 623 KPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVETYSLTGL 682
P ++R ++ L W P + + ++ + + L E + L
Sbjct: 4 PPENVR-MNSVNFKNILQWESPAFAKGQL-TFTAQYLSYRIFQDKCMQTTLTE-CDFSSL 60
Query: 683 YPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPPV 742
+ + + A+ + G P V + + + + + P +
Sbjct: 61 SKYGDHTLRVRAEFADEHSDWVQITFSPVDDTIIGPPGMQVE---VLADCLHMRFLAPKI 117
Query: 743 E--------RSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFVLDELKKWTEYRIWVLA 794
E ++ + Y +Q+ + G +D + I VL L+ WT Y + V
Sbjct: 118 ENEYETWTMKNVYNSWTYNVQYWKQG-TDEKFQITP--QYDFEVLRNLEPWTTYCVQVRG 174
Query: 795 GTSIGDGPS--SYPITIRTHEDD--PS 817
+ S P+ +T D+ PS
Sbjct: 175 FLPDRNKAGEWSEPVCEQTTHDETVPS 201
Score = 62.8 bits (152), Expect = 2e-11
Identities = 34/206 (16%), Positives = 63/206 (30%), Gaps = 32/206 (15%)
Query: 200 LPVAPLDVKISEVTATSVRLDWTYPSET--LLYYVIQYKPKAANTPYSEISGIITTYYTV 257
+P P +V+++ V ++ L W P+ L + QY + T
Sbjct: 2 VP-PPENVRMNSVNFKNI-LQWESPAFAKGQLTFTAQYLSYRIFQD--KCMQTTLTECDF 57
Query: 258 RNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDE 317
+LS Y ++ + A +T G P +QV L+ + ++
Sbjct: 58 SSLSKYGDHTLRVRAEFADEHSDWVQITFSPVDDTIIG--PPGMQVEVLADCLHM-RFLA 114
Query: 318 PETPNGQI---------------------TAKHHRRIGLVETYSLTGLYPNTLYYIWLAA 356
P+ N T + + + L L P T Y + +
Sbjct: 115 PKIENEYETWTMKNVYNSWTYNVQYWKQGTDEKFQITPQYDFEVLRNLEPWTTYCVQVRG 174
Query: 357 QSP--RGEGATTPPIPVRTKQYGKTP 380
P G + P+ +T P
Sbjct: 175 FLPDRNKAGEWSEPVCEQTTHDETVP 200
Score = 58.6 bits (141), Expect = 8e-10
Identities = 34/230 (14%), Positives = 64/230 (27%), Gaps = 42/230 (18%)
Query: 484 APRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLTTI 543
P +V++ ++ ++QW+ P GQ+T + Y + +T
Sbjct: 4 PPENVRMNSVNFKN-ILQWESPAFAKGQLT-FTAQYLSYRIFQDKCMQT----TLTECDF 57
Query: 544 SDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLAWSKP 603
S L+ + +T+RV+A + + P V + K
Sbjct: 58 SSLSKYGDHTLRVRAEFADEHSDWVQITFSPVDDTIIGPPGMQVEVLADCLHMRFLAPKI 117
Query: 604 THSGENIISYELYWNDTYAKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYA 663
+ E +Y + TY YW
Sbjct: 118 ENEYETWTMKNVYNSWTY--------------------------------NVQYWKQGTD 145
Query: 664 KAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSP--RGEGATTPPIPVRT 711
+ + L L P T Y + + P G + P+ +T
Sbjct: 146 EKFQITPQY--DFEVLRNLEPWTTYCVQVRGFLPDRNKAGEWSEPVCEQT 193
Score = 54.0 bits (129), Expect = 3e-08
Identities = 28/149 (18%), Positives = 48/149 (32%), Gaps = 21/149 (14%)
Query: 447 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPE 506
L + + + A+ G P +QV L+ + ++ P+
Sbjct: 60 LSKYGDHTLRVRAEFADEHSDWVQITFSPVDDTIIG--PPGMQVEVLADCLHM-RFLAPK 116
Query: 507 TPNGQITG----------YKVYYTQDQSLPMSAWETQVVDNNQLTTISDLTPHTIYTIRV 556
N T Y V Y + + + Q+ + +L P T Y ++V
Sbjct: 117 IENEYETWTMKNVYNSWTYNVQYWKQGT----DEKFQITPQYDFEVLRNLEPWTTYCVQV 172
Query: 557 QAFTSV--GPGPLSAPVLVKTQQG--VPS 581
+ F G S PV +T VPS
Sbjct: 173 RGFLPDRNKAGEWSEPVCEQTTHDETVPS 201
Score = 48.6 bits (115), Expect = 2e-06
Identities = 31/202 (15%), Positives = 58/202 (28%), Gaps = 34/202 (16%)
Query: 719 PPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFV 778
PP+NV ++ +I + WE P + G + + + T
Sbjct: 4 PPENVRMNSVNFKNI-LQWESPAF--AKGQLTFT----AQYLSYRIFQDKCMQTTLTECD 56
Query: 779 LDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDPSEVCPTQNDFRKNK-------- 830
L K+ ++ + V A D S + + DD P
Sbjct: 57 FSSLSKYGDHTLRVRAEF--ADEHSDWVQITFSPVDDTIIGPPGMQVEVLADCLHMRFLA 114
Query: 831 ---KTNGSNFKGGYLNDPMRFDVS------------DGGALELNVTGLQPDTIYTIQVAA 875
+ + + + ++V + L+P T Y +QV
Sbjct: 115 PKIENEYETWTMKNVYNSWTYNVQYWKQGTDEKFQITPQYDFEVLRNLEPWTTYCVQVRG 174
Query: 876 --LTRKGDGDRSKPETIKTPGG 895
R G+ S+P +T
Sbjct: 175 FLPDRNKAGEWSEPVCEQTTHD 196
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 70.2 bits (172), Expect = 3e-13
Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 9/115 (7%)
Query: 102 RVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRK-GQNIELTPDDKLPV--GRN 158
+ PP+F V D C GSP V W K I+ + ++
Sbjct: 96 QEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVA 155
Query: 159 VLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISE 211
VL + ++ + +YTC A + G +ST +KV+ P+ P V+ +
Sbjct: 156 VLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK--EPPVFRKK--PHPVETLK 206
Score = 65.9 bits (161), Expect = 7e-12
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 6/94 (6%)
Query: 103 VPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRK-GQNIELTPDDKLPV--GRNV 159
PP F + P ++ ++ L C G+ + W K + I + K+ +
Sbjct: 4 APPFFDLKPVSV-DLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTAT 62
Query: 160 LTLDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
LT+ +VT+ + YTC A++V G S + VQ
Sbjct: 63 LTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ 96
Score = 65.5 bits (160), Expect = 1e-11
Identities = 20/96 (20%), Positives = 38/96 (39%), Gaps = 8/96 (8%)
Query: 102 RVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPV----GR 157
+ PP F P +E + + ++L C G+P V W K EL K +
Sbjct: 190 KEPPVFRKKP-HPVETLKGADVHLECELQGTPPFQVSWHKD-KRELRSGKKYKIMSENFL 247
Query: 158 NVLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
+ + V ++ Y C A++ +G + ++
Sbjct: 248 TSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLK 283
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 67.9 bits (166), Expect = 3e-13
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 102 RVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPF-VKWRK-GQNIELTPDDKLPVGRNV 159
P F++ P L V ++P LSC AVG P P + W + I +V
Sbjct: 96 EGVPFFTVEPKDL-AVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP-----SPSV 149
Query: 160 LTLDRVTESENYTCIAASVLGVIETSTI-VKVQ 191
L + VT+S ++C A ++ G+ + T V +Q
Sbjct: 150 LNVTGVTQSTMFSCEAHNLKGLASSRTATVHLQ 182
Score = 54.8 bits (132), Expect = 1e-08
Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 9/96 (9%)
Query: 104 PPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRK-GQNIELTPDDKLPVGRN---- 158
+ + P L V P+ L+C G P ++W K G ++ +PV
Sbjct: 2 GLKL-MGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIG 60
Query: 159 VLTLDRVTESE--NYTCIAASVLGVIETSTI-VKVQ 191
L+L V S+ Y C + + + V+
Sbjct: 61 FLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVE 96
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 71.4 bits (175), Expect = 4e-13
Identities = 16/109 (14%), Positives = 39/109 (35%), Gaps = 2/109 (1%)
Query: 85 RRGRLAHAVRQVADPVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQN 144
G + + + P+ + P + + + L C A+G+P+P + WR+
Sbjct: 185 VLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADG 244
Query: 145 IELTPDDKLPVGRNVLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
+ + +L + + + +Y C+A + G +
Sbjct: 245 KPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFY 293
Score = 61.8 bits (150), Expect = 4e-10
Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 6/94 (6%)
Query: 103 VPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRK-GQNIELTPDDKLPVGRNVLT 161
P + + V ++ + C A G P P +W K G L D++ + + L
Sbjct: 294 AQPNWVQIINDI-HVAMEESVFWECKANGRPKPTYRWLKNGD--PLLTRDRIQIEQGTLN 350
Query: 162 LDRVTESE--NYTCIAASVLGVIETSTIVKVQCK 193
+ V S+ Y C+A + GVI +S + V +
Sbjct: 351 ITIVNLSDAGMYQCVAENKHGVIFSSAELSVIAE 384
Score = 53.3 bits (128), Expect = 2e-07
Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 7/99 (7%)
Query: 104 PPQFSIPPPALLEVMLD--SPLNLSCVAVGSPMPFVKWRK-GQNIELTPDDKLPVGRNVL 160
P F P ++ + + LSC G+P P ++W+ G ++++ D + V L
Sbjct: 5 GPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSL 64
Query: 161 TLDRVTESE---NYTCIAASVLGVIETSTIVKVQCKYAP 196
++ +++ Y CIA + G I S K+Q Y
Sbjct: 65 LINNPNKTQDAGTYQCIATNSFGTI-VSREAKLQFAYLE 102
Score = 46.4 bits (110), Expect = 3e-05
Identities = 15/116 (12%), Positives = 35/116 (30%), Gaps = 5/116 (4%)
Query: 103 VPPQFSIPPPALLEVMLDSPLNLSCVAV-GSPMPFVKWRKGQNIELTPDDKLPVGRN-VL 160
F + + V + L C S W + + + L
Sbjct: 100 YLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNL 159
Query: 161 TLDRVTESE--NYTCIAASVLG-VIETSTIVKVQCKYAPLLTLPVAPLDVKISEVT 213
+ +V +S+ NYTC+ + + + + ++ ++V+ E
Sbjct: 160 YIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETV 215
>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 104
Score = 65.2 bits (159), Expect = 4e-13
Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 3/93 (3%)
Query: 199 TLPV-APLDVKISEVTATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEIS-GIITTYYT 256
+ P+ P + ++ VT +V L W PS +Y+++ P + E +
Sbjct: 6 SGPLPPPRALTLAAVTPRTVHLTWQ-PSAGATHYLVRCSPASPKGEEEEREVQVGRPEVL 64
Query: 257 VRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITT 289
+ L P +YE + ++ T
Sbjct: 65 LDGLEPGRDYEVSVQSLRGPEGSEARGIRARTP 97
Score = 65.2 bits (159), Expect = 4e-13
Identities = 17/103 (16%), Positives = 37/103 (35%), Gaps = 7/103 (6%)
Query: 715 VPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQ 774
P PP+ ++ ++ ++ ++W+P +Y ++ E +
Sbjct: 7 GPLPPPRALTLAAVTPRTVHLTWQPSA------GATHYLVRCSPASPKGEEEEREVQVGR 60
Query: 775 TSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDPS 817
+LD L+ +Y + V + + I RT PS
Sbjct: 61 PEVLLDGLEPGRDYEVSVQSLRGPEGSEAR-GIRARTPTSGPS 102
Score = 59.5 bits (144), Expect = 4e-11
Identities = 21/119 (17%), Positives = 40/119 (33%), Gaps = 18/119 (15%)
Query: 464 GEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQ 523
G ++ P+P PR + + ++ T+ + W T Y V +
Sbjct: 1 GSSGSSGPLP----------PPRALTLAAVTPRTVHLTWQPS----AGATHYLVRCSP-- 44
Query: 524 SLPMSAWETQVVDNNQLT-TISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPS 581
+ P E + V + + L P Y + VQ+ + + +T PS
Sbjct: 45 ASPKGEEEEREVQVGRPEVLLDGLEPGRDYEVSVQSLRGPEGSE-ARGIRARTPTSGPS 102
Score = 48.7 bits (116), Expect = 2e-07
Identities = 13/99 (13%), Positives = 26/99 (26%), Gaps = 7/99 (7%)
Query: 624 PRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVETYSLTGLY 683
PR L + V L W + ++ + + + L GL
Sbjct: 12 PRALTLAAVTPRTVHLTWQPSAGATHYLVRCSPASPKGEEEEREVQ--VGRPEVLLDGLE 69
Query: 684 PNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQN 722
P Y + + + + P + P +
Sbjct: 70 PGRDYEVSVQSLRGPEGSE-----ARGIRARTPTSGPSS 103
Score = 47.1 bits (112), Expect = 9e-07
Identities = 16/99 (16%), Positives = 29/99 (29%), Gaps = 16/99 (16%)
Query: 288 TTGETEPGTAPRDVQVRPLSSSTMVIQWDEPETPNG-QITAKHHRRIGLVET-------- 338
++G + P PR + + ++ T+ + W + G E
Sbjct: 2 SSGSSGPLPPPRALTLAAVTPRTVHLTWQPSAGATHYLVRCSPASPKGEEEEREVQVGRP 61
Query: 339 -YSLTGLYPNTLYYIWLAAQSPRGEG------ATTPPIP 370
L GL P Y + + + A TP
Sbjct: 62 EVLLDGLEPGRDYEVSVQSLRGPEGSEARGIRARTPTSG 100
Score = 32.9 bits (75), Expect = 0.11
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 852 DGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKTPGGVP 897
G E+ + GL+P Y + V +L + +TP P
Sbjct: 57 QVGRPEVLLDGLEPGRDYEVSVQSLRGPEGSEAR-GIRARTPTSGP 101
Score = 28.6 bits (64), Expect = 2.9
Identities = 5/32 (15%), Positives = 12/32 (37%)
Query: 31 TEPGTAPRDVQVRPLSSSTMVIQWDEPETPNG 62
+ P PR + + ++ T+ + W
Sbjct: 6 SGPLPPPRALTLAAVTPRTVHLTWQPSAGATH 37
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 67.1 bits (164), Expect = 8e-13
Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 8/100 (8%)
Query: 104 PPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRK-GQNIELTPDDKLPV----GRN 158
P F+ P ++ V+ S G P+P V W + GQ I + + + GR
Sbjct: 5 APTFTQPLQSV-VVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63
Query: 159 VLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQCKYAP 196
LT+ VT++ Y+ A + G ++ + V+ + AP
Sbjct: 64 KLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAP 103
Score = 61.3 bits (149), Expect = 9e-11
Identities = 18/97 (18%), Positives = 33/97 (34%), Gaps = 8/97 (8%)
Query: 101 RRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPV----G 156
PP F + + V S + L G P P VK+ + E+ +
Sbjct: 100 ETAPPNF-VQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRD-GAEIQSSLDFQISQEGD 157
Query: 157 RNVLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
L + + Y+ A + +G ++ + VQ
Sbjct: 158 LYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 71.0 bits (174), Expect = 9e-13
Identities = 30/154 (19%), Positives = 54/154 (35%), Gaps = 7/154 (4%)
Query: 198 LTLPVAPLDVKISEVTATSVRLDWTYPSE----TLLYYVIQYKPKAANTPYSEISGIITT 253
+ P P I + +V L W P+ + Y I+ + + +S + T
Sbjct: 7 VPEPEPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGS-WSPCAKSRYT 65
Query: 254 YYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPA--VITTGETEPGTAPRDVQVRPLSSSTM 311
Y T+ L +YEF IIA N G+ P P V+ G+ DV +
Sbjct: 66 YTTIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLIPGDERKRRRGYDVDEQGKIVRGK 125
Query: 312 VIQWDEPETPNGQITAKHHRRIGLVETYSLTGLY 345
+ I +++ + ++ + Y
Sbjct: 126 GTVSSNYDNYVFDIWKQYYPQPVEIKHDHVLDHY 159
Score = 51.0 bits (122), Expect = 2e-06
Identities = 27/153 (17%), Positives = 47/153 (30%), Gaps = 9/153 (5%)
Query: 484 APRDVQVRPLSSSTMVIQWDEPE-TPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLT- 541
PR + + +++ W P +T Y + + + +W + +
Sbjct: 12 PPRFPIIENILDEAVILSWKPPALDGGSLVTNYTI---EKREAMGGSW-SPCAKSRYTYT 67
Query: 542 TISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLAWS 601
TI L Y R+ A G P G + R VD Q V
Sbjct: 68 TIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLIPGDERKRRRGYDVDEQGKIVR---G 124
Query: 602 KPTHSGENIISYELYWNDTYAKPRDLRAVDIQE 634
K T S W Y +P +++ + +
Sbjct: 125 KGTVSSNYDNYVFDIWKQYYPQPVEIKHDHVLD 157
Score = 48.3 bits (115), Expect = 1e-05
Identities = 31/127 (24%), Positives = 42/127 (33%), Gaps = 7/127 (5%)
Query: 70 RAARSHARLAAQSVLRRGRLAHAVRQVADPVRRVPPQFSIPPPALLEVMLDSPLNLSCVA 129
R++ S LR+ R + A R I P EV N C
Sbjct: 447 EPLPPLGRISNYSSLRKHRPQEYSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRV 506
Query: 130 VGSPMPFVKWRKGQNIELTPDDKLPV----GRNVLTLDRVTESEN--YTCIAASVLGVIE 183
+ S P V W K + EL K LT++RV + YT A + G E
Sbjct: 507 IASSPPVVTWHKD-DRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKE 565
Query: 184 TSTIVKV 190
+ V
Sbjct: 566 EIVFLNV 572
Score = 47.9 bits (114), Expect = 1e-05
Identities = 19/119 (15%), Positives = 39/119 (32%), Gaps = 3/119 (2%)
Query: 718 APPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSF 777
PP+ E + ++ +SW+PP ++ + Y ++ E S T
Sbjct: 11 EPPRFPIIENILDEAVILSWKPPALD-GGSLVTNYTIEKREAM--GGSWSPCAKSRYTYT 67
Query: 778 VLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDPSEVCPTQNDFRKNKKTNGSN 836
++ L+ +Y ++A G P D + + + K G
Sbjct: 68 TIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLIPGDERKRRRGYDVDEQGKIVRGKG 126
Score = 41.0 bits (96), Expect = 0.002
Identities = 19/149 (12%), Positives = 41/149 (27%), Gaps = 10/149 (6%)
Query: 624 PRDLRAVDIQETAVTLAWSKPTH-SGENIISYEL-YWNDTYAKAKHHRRIGLV--ETYSL 679
PR +I + AV L+W P G + +Y + ++
Sbjct: 13 PRFPIIENILDEAVILSWKPPALDGGSLVTNYTIEKREAM---GGSWSPCAKSRYTYTTI 69
Query: 680 TGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEP 739
GL Y + A++ G+ P +PG + + + +
Sbjct: 70 EGLRAGKQYEFRIIAENKHGQSKPCEPTAPVL---IPGDERKRRRGYDVDEQGKIVRGKG 126
Query: 740 PPVERSNGHIVYYKLQFVETGRSDSEASI 768
+ ++ Q+ +
Sbjct: 127 TVSSNYDNYVFDIWKQYYPQPVEIKHDHV 155
Score = 34.4 bits (79), Expect = 0.17
Identities = 9/54 (16%), Positives = 17/54 (31%), Gaps = 1/54 (1%)
Query: 849 DVSDGGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKP-ETIKTPGGVPNRPH 901
+ + GL+ Y ++ A + G +P + PG R
Sbjct: 58 PCAKSRYTYTTIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLIPGDERKRRR 111
Score = 33.7 bits (77), Expect = 0.35
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 577 QGVPSQPRDLRAVDIQETAVTLAWSKPTH-SGENIISY 613
P PR +I + AV L+W P G + +Y
Sbjct: 7 VPEPEPPRFPIIENILDEAVILSWKPPALDGGSLVTNY 44
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 70.7 bits (173), Expect = 1e-12
Identities = 44/261 (16%), Positives = 75/261 (28%), Gaps = 29/261 (11%)
Query: 102 RVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRN-VL 160
P ++ L ++C G P+ + W + N L + K V N L
Sbjct: 525 YGLPYIRQMEK--KAIVAGETLIVTCPVAGYPIDSIVWERD-NRALPINRKQKVFPNGTL 581
Query: 161 TLDRVTESE---NYTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISEVTATSV 217
++ V + YTC+A + G + ++VQ P + P A + +
Sbjct: 582 IIENVERNSDQATYTCVAKNQEGYSARGS-LEVQVMVLPRII-PFAFEEGPAQV--GQYL 637
Query: 218 RLDWTYPSETLLYYVIQYKPKAANTPYSEISGIITTYY----TVRNLSPYTEYEFYIIAV 273
L + P L + A + I+ T+ + F A
Sbjct: 638 TLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHAR 697
Query: 274 NNLGRGPPSSPAVITTGETEPGTAPRDVQVRP----------LSSSTMVIQW--DEPETP 321
N G ++P + P D + W +TP
Sbjct: 698 NLAGHQQFTTP-LNVYVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTP 756
Query: 322 NGQITAKHHRRIGLVETYSLT 342
K I VE +L
Sbjct: 757 GEYKDLKKSDNI-RVEEGTLH 776
Score = 65.0 bits (158), Expect = 8e-11
Identities = 20/114 (17%), Positives = 38/114 (33%), Gaps = 7/114 (6%)
Query: 85 RRGRLAHAVRQVADPVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKG-- 142
R + VP S+ + S + L C A G P+P +W K
Sbjct: 228 RLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIE 287
Query: 143 ---QNIELTPDDKLPVGRNVLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
+ + +D++ L + + Y C+ + +G T++ V
Sbjct: 288 GTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVT 341
Score = 61.5 bits (149), Expect = 8e-10
Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 13/103 (12%)
Query: 100 VRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRNV 159
R PP + + L CVA G+P P + W ++ +D+ VG+ V
Sbjct: 425 GRFDPPVI-RQAFQEETMEPGPSVFLKCVAGGNPTPEISWELD-GKKIANNDRYQVGQYV 482
Query: 160 ---------LTLDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
L + V ++ Y CIA S +GV E S + V
Sbjct: 483 TVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVY 525
Score = 61.5 bits (149), Expect = 9e-10
Identities = 23/109 (21%), Positives = 41/109 (37%), Gaps = 9/109 (8%)
Query: 91 HAVRQVADPVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPF-VKWRKGQNIELTP 149
++ R + V P+ + L L C G +P + W ++
Sbjct: 605 YSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLD-GQAISE 663
Query: 150 DDKLPVGRN-----VLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
D + R VLT++ V S N+TC A ++ G + +T + V
Sbjct: 664 DLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVY 712
Score = 61.1 bits (148), Expect = 1e-09
Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 10/96 (10%)
Query: 103 VPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRNVLTL 162
P I PP V P +C G+P+ V W K + +VL +
Sbjct: 342 APLSAKIDPPTQ-TVDFGRPAVFTCQYTGNPIKTVSWMKD-------GKAIGHSESVLRI 393
Query: 163 DRVTESE--NYTCIAASVLGVIETSTIVKVQCKYAP 196
+ V + + Y C + E S +K+ ++ P
Sbjct: 394 ESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDP 429
Score = 58.8 bits (142), Expect = 6e-09
Identities = 42/232 (18%), Positives = 65/232 (28%), Gaps = 33/232 (14%)
Query: 103 VPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRK--GQNIELTPDDKLPVGRNVL 160
P F P ++ + + C A G+PMP + W + G + P + L
Sbjct: 37 KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKL 96
Query: 161 TLDRVTESEN--------YTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKI--- 209
+ Y C+A + G I S V V+ A V V
Sbjct: 97 VFPPFRAEDYRQEVHAQVYACLARNQFGSI-ISRDVHVRAVVAQYYEADVNKEHVIRGNS 155
Query: 210 --------SEVTATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEISGIITTYYTVRNLS 261
S V + W E + +Y K P E+ +R +
Sbjct: 156 AVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGEL--------HIREVG 207
Query: 262 PY-TEYEFYIIAVNNLGRGPPSSPAVITTGETEP--GTAPRDVQVRPLSSST 310
P + + L S TEP P+ V + T
Sbjct: 208 PEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKT 259
Score = 57.3 bits (138), Expect = 2e-08
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 10/99 (10%)
Query: 102 RVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRK------GQNIELTPDDKLPV 155
VPP++ + P S + C A G P P V W+K G+ +L D + V
Sbjct: 712 YVPPRWILEPTDK-AFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRV 770
Query: 156 GRNVLTLDRVTESE--NYTCIAASVLGVIETSTI-VKVQ 191
L +D + ++ Y C A + +G ++ I + VQ
Sbjct: 771 EEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQ 809
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 67.2 bits (164), Expect = 1e-12
Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 10/113 (8%)
Query: 91 HAVRQVADPVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPD 150
+ ++ D V Q + P + ++M S L L CVAVGSP+P +W K + LT +
Sbjct: 105 ESFQRSVDGVSESKLQICVEPTSQ-KLMPGSTLVLQCVAVGSPIPHYQWFKN-ELPLTHE 162
Query: 151 DKLPVGRNVLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQCKYAPLLTLP 201
+ + + V Y C + ++ + + L P
Sbjct: 163 T-----KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIII-DELNNLGHP 209
Score = 51.8 bits (124), Expect = 2e-07
Identities = 19/110 (17%), Positives = 37/110 (33%), Gaps = 12/110 (10%)
Query: 90 AHAVRQVADPVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTP 149
+H + + + ++ P + V+ + L C A G P +W K
Sbjct: 4 SHHHHHHSSGLVPRGSKITVNPESK-AVLAGQFVKLCCRATGHPFVQYQWFKM------- 55
Query: 150 DDKLPVGRN-VLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQCKYAP 196
+ ++P G L + V + Y C + E S ++ P
Sbjct: 56 NKEIPNGNTSELIFNAVHVKDAGFYVCRVNNNFTF-EFSQWSQLDVCDIP 104
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 63.5 bits (155), Expect = 1e-12
Identities = 25/98 (25%), Positives = 35/98 (35%), Gaps = 5/98 (5%)
Query: 97 ADPVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRK-GQNIELTPDDKLPV 155
V P FS V+ L C G+P+P + W GQ I+
Sbjct: 4 GSSGMEVAPSFSSVL-KDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYAR-STCEA 61
Query: 156 GRNVLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
G L + + YTC+A + LG + S V V
Sbjct: 62 GVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTVH 99
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 68.7 bits (168), Expect = 2e-12
Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 4/98 (4%)
Query: 97 ADPVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRK-GQNIELTPDDKLPV 155
+DP F + P+ + + L C G P P W + + I+L +
Sbjct: 214 SDPGLHRQLYF-LQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLL 272
Query: 156 GRNVLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
G + L + VT+ + YTC+ I S + V
Sbjct: 273 GGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVL 310
Score = 60.6 bits (147), Expect = 1e-09
Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 5/93 (5%)
Query: 102 RVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRN-VL 160
VPP F P L + C G P+P V W K + P D + L
Sbjct: 310 LVPPWFLNHPSNL-YAYESMDIEFECAVSGKPVPTVNWMKN-GDVVIPSDYFQIVGGSNL 367
Query: 161 TLDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
+ V +S+ Y C+A + G ++S + V
Sbjct: 368 RILGVVKSDEGFYQCVAENEAGNAQSSAQLIVP 400
Score = 55.6 bits (134), Expect = 4e-08
Identities = 25/119 (21%), Positives = 42/119 (35%), Gaps = 13/119 (10%)
Query: 103 VPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRK-GQNIELTPDDK----LPVGR 157
P +F ++ + + L C +G PMP + W+K Q++ P D LP G
Sbjct: 120 GPLRFLSQTESI-TAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSG- 177
Query: 158 NVLTLDRVTESE--NYTCIAASVLGVIETST---IVKVQCKYAPLLTLPVAPLDVKISE 211
L + R+ + Y C A + + + L P +V E
Sbjct: 178 -ALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIE 235
Score = 50.2 bits (120), Expect = 2e-06
Identities = 24/120 (20%), Positives = 37/120 (30%), Gaps = 11/120 (9%)
Query: 102 RVPPQFSIPPPALLEVMLDSPLNLSCVAVGS-PMPFVKWRK-GQNIELTPDDKLPVGRN- 158
R F P M + L+C A +P +KW+K G + L DD+ N
Sbjct: 19 RRSLHFVSEPSDA-VTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNG 77
Query: 159 VLTLDRVTESE-------NYTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISE 211
L + + S Y C A+ S KV + + +
Sbjct: 78 SLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGD 137
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 67.5 bits (165), Expect = 3e-12
Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 4/96 (4%)
Query: 100 VRRVPPQFSIPP-PALLEVMLDSPLNLSCVAVGSPMPFVKWRK-GQNIELTPDDKLPVGR 157
+ VPP S+P + SC A GSP P + W + G+ IE L
Sbjct: 188 IVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSN 247
Query: 158 NVLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
LT+ + S+ Y C A + G E ++V
Sbjct: 248 TELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF 283
Score = 61.0 bits (148), Expect = 4e-10
Identities = 19/114 (16%), Positives = 36/114 (31%), Gaps = 7/114 (6%)
Query: 103 VPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRK-GQNIELTPDDKLPV-GRNVL 160
F E + C SP P V W + + D++ + N L
Sbjct: 97 QKLTFREVVSPQ-EFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNL 155
Query: 161 TLDRVTESE--NYTCIAA-SVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISE 211
+ + +S+ Y C G I+ I+ + P +++P +
Sbjct: 156 QILNINKSDEGIYRCEGRVEARGEIDFRDIIVIV-NVPPAISMPQKSFNATAER 208
Score = 54.1 bits (130), Expect = 8e-08
Identities = 18/92 (19%), Positives = 34/92 (36%), Gaps = 8/92 (8%)
Query: 103 VPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRN---- 158
Q +I + E+ + +C A+G P W Q ++ ++ V +
Sbjct: 3 ALLQVTISLSKV-ELSVGESKFFTCTAIGEPESID-WYNPQGEKIISTQRVVVQKEGVRS 60
Query: 159 VLTLDRVTESE--NYTCIAASVLGVIETSTIV 188
LT+ + Y C A G + +T+V
Sbjct: 61 RLTIYNANIEDAGIYRCQATDAKGQTQEATVV 92
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 67.6 bits (165), Expect = 3e-12
Identities = 18/113 (15%), Positives = 38/113 (33%), Gaps = 5/113 (4%)
Query: 103 VPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRK-GQNIELTPDDKLPV-GRNVL 160
F P E + C V S P + W+ G+++ L D + V N L
Sbjct: 99 QKLMFKNAPTPQ-EFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYL 157
Query: 161 TLDRVTESE--NYTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISE 211
+ + +++ Y C + ++V P + + ++ +
Sbjct: 158 QIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANL 210
Score = 62.6 bits (152), Expect = 1e-10
Identities = 24/101 (23%), Positives = 38/101 (37%), Gaps = 10/101 (9%)
Query: 102 RVPPQFSIPPPAL-LEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRNV- 159
VPP + L + L C A G P P + W K + +++
Sbjct: 192 NVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKD-GEPIENEEEDDEKHIFS 250
Query: 160 -----LTLDRVTESE--NYTCIAASVLGVIETSTIVKVQCK 193
LT+ V +++ Y CIA + G + S +KV K
Sbjct: 251 DDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFAK 291
Score = 49.9 bits (119), Expect = 2e-06
Identities = 21/117 (17%), Positives = 36/117 (30%), Gaps = 15/117 (12%)
Query: 105 PQFSIPPPALLEVMLDSPLNLSCVAVGSPM-PFVKWRKGQNIELTPDD------KLPVGR 157
Q I P E+ + C G + W +L+P+
Sbjct: 3 LQVDIVPSQG-EISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDS 61
Query: 158 NVLTLDRVTESE--NYTCIAASVLGVIETSTI-VKVQCKYAPLLTLPVAPLDVKISE 211
+ LT+ + Y C+ + G +T+ VK+ L AP + E
Sbjct: 62 STLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIF----QKLMFKNAPTPQEFKE 114
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1
(isoform 2); hydrolase, immunoglobulin domain, nucleus,
protease; 1.15A {Homo sapiens}
Length = 91
Score = 62.4 bits (152), Expect = 3e-12
Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 9/87 (10%)
Query: 104 PPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRNVLTLD 163
Q + P + ++M S L L CVAVGSP+P +W K + LT + + + +
Sbjct: 3 KLQICVEPTSQ-KLMPGSTLVLQCVAVGSPIPHYQWFKN-ELPLTHET-----KKLYMVP 55
Query: 164 RVTESE--NYTCIAASVLGVIETSTIV 188
V Y C + ++ +
Sbjct: 56 YVDLEHQGTYWCHVYNDRDSQDSKKVE 82
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 62.7 bits (153), Expect = 3e-12
Identities = 17/96 (17%), Positives = 35/96 (36%), Gaps = 8/96 (8%)
Query: 103 VPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRK-GQNIELTPDDKLPV----GR 157
+PP+ P+ + + L ++C G P P V W G+ I + +
Sbjct: 4 IPPKI-EALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDL 62
Query: 158 NVLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
L + V + + YT + G + + ++
Sbjct: 63 TTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIR 98
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 69.4 bits (170), Expect = 3e-12
Identities = 29/116 (25%), Positives = 44/116 (37%), Gaps = 11/116 (9%)
Query: 102 RVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPV----GR 157
+ PP+F V D C GSP V W K E+ K +
Sbjct: 288 QEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKD-ETEIQESSKFRMSFVESV 346
Query: 158 NVLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISE 211
VL + ++ + +YTC A + G +ST +KV K P+ P V+ +
Sbjct: 347 AVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKV--KEPPVFRKK--PHPVETLK 398
Score = 66.4 bits (162), Expect = 2e-11
Identities = 20/96 (20%), Positives = 38/96 (39%), Gaps = 8/96 (8%)
Query: 102 RVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPV----GR 157
+ PP F P +E + + ++L C G+P V W K EL K +
Sbjct: 382 KEPPVF-RKKPHPVETLKGADVHLECELQGTPPFQVSWHKD-KRELRSGKKYKIMSENFL 439
Query: 158 NVLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
+ + V ++ Y C A++ +G + ++
Sbjct: 440 TSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLK 475
Score = 64.8 bits (158), Expect = 6e-11
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 8/98 (8%)
Query: 100 VRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPV---- 155
VPP F + P ++ ++ L C G+ + W K N E+ P +
Sbjct: 193 EHEVPPFFDLKPVSV-DLALGESGTFKCHVTGTAPIKITWAKD-NREIRPGGNYKMTLVE 250
Query: 156 GRNVLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
LT+ +VT+ + YTC A++V G S + VQ
Sbjct: 251 NTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ 288
Score = 61.0 bits (148), Expect = 1e-09
Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 7/113 (6%)
Query: 104 PPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRK-GQNIELTPDDK--LPVGRNVL 160
PP F P + E + P+ L C G+P + W K + P K L
Sbjct: 5 PPYFIEPLEHV-EAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASL 63
Query: 161 TLDRVTESE--NYTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISE 211
+++V S+ YTC A + +G + +S ++ ++ + P + DV +
Sbjct: 64 VINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLP-PSFARKLKDVHETL 115
Score = 60.6 bits (147), Expect = 2e-09
Identities = 17/96 (17%), Positives = 32/96 (33%), Gaps = 7/96 (7%)
Query: 102 RVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRN--- 158
+ PP+F + ++ + L G+ V W K + + D + + +
Sbjct: 475 KAPPRFVKKLSDI-STVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENI 533
Query: 159 -VLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
L R + YTC + G E + V
Sbjct: 534 ATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVL 569
Score = 58.7 bits (142), Expect = 6e-09
Identities = 24/103 (23%), Positives = 37/103 (35%), Gaps = 8/103 (7%)
Query: 100 VRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRN- 158
R++PP F+ + L P+ C GS V W K L D L
Sbjct: 97 ERKLPPSFARKLKDV-HETLGFPVAFECRINGSEPLQVSWYKD-GELLKDDANLQTSFIH 154
Query: 159 ---VLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQCKYAP 196
L + + +S Y C A++ LG +S + + P
Sbjct: 155 NVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVP 197
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 65.2 bits (159), Expect = 3e-12
Identities = 24/101 (23%), Positives = 37/101 (36%), Gaps = 14/101 (13%)
Query: 103 VPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRK-GQNIELTPDDKLPVGRNV-- 159
V P + + L C A G P+P + W++ T DK GR
Sbjct: 94 VQPHIIQLKN--ETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVK 151
Query: 160 -------LTLDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
L + V S+ Y C AAS +G + S + ++
Sbjct: 152 GQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 192
Score = 63.3 bits (154), Expect = 1e-11
Identities = 24/92 (26%), Positives = 35/92 (38%), Gaps = 4/92 (4%)
Query: 104 PPQFSIPP-PALLEVMLDSPLNLSCVAVGSPMPFVKWRK-GQNIELTPDDKLPVGRNVLT 161
P S+P + SC A GSP P + W + G+ IE L LT
Sbjct: 2 MPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELT 61
Query: 162 LDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
+ + S+ Y C A + G E ++V
Sbjct: 62 VRNIINSDGGPYVCRATNKAGEDEKQAFLQVF 93
>2erj_C Cytokine receptor common gamma chain; immune system-cytok complex;
HET: NAG FUC BMA; 3.00A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1
Length = 247
Score = 66.4 bits (161), Expect = 4e-12
Identities = 27/207 (13%), Positives = 63/207 (30%), Gaps = 18/207 (8%)
Query: 622 AKPRDLRAVDIQETAVTLAWSKPTH-SGENIISYELYWNDTYAKAK----HHRRIGLVET 676
+++ + W + N+ + Y N K + + +
Sbjct: 38 LPLPEVQCFVFNVEYMNCTWQSSSEPQPTNLTLHYWYKNSDNDKVQKCSHYLFSEEITSG 97
Query: 677 YSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRIS 736
L + + Q PR + +P P+N++ LS + + ++
Sbjct: 98 CQLQKKEIHLYQTFVVQLQDPREPRRQATQMLKLQNLVIP-WAPENLTLHKLSESQLELN 156
Query: 737 WEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFVLDELKKWTEYRIWVLAGT 796
W + H+V Y+ D + ++ + F L + Y V +
Sbjct: 157 WNNRFLNHCLEHLVQYRTD------WDHSWTEQSVDYRHKFSLPSVDGQKRYTFRVRSRF 210
Query: 797 SIGDGPS------SYPITIRTHEDDPS 817
+ G + S+PI ++ +
Sbjct: 211 NPLCGSAQHWSEWSHPIHWGSNTSKEN 237
Score = 58.7 bits (141), Expect = 2e-09
Identities = 33/191 (17%), Positives = 57/191 (29%), Gaps = 18/191 (9%)
Query: 400 SLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYGKTPGFGEQALYPNTLYYIWLAA 459
S TL+Y + + T G Q + +
Sbjct: 61 SEPQPTNLTLHYWY-----KNSDNDKVQKCSHYLFSEEITSGCQLQKKEIHLYQTFVVQL 115
Query: 460 QSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYY 519
Q PR + P AP ++ + LS S + + W+ + + V Y
Sbjct: 116 QDPREPRRQATQMLKLQNLVIPW-APENLTLHKLSESQLELNWNNRFLNHCLE--HLVQY 172
Query: 520 TQDQSLPMSAWETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVGPGPL------SAPVLV 573
D +W Q VD ++ + YT RV++ + G S P+
Sbjct: 173 RTDWD---HSWTEQSVDYRHKFSLPSVDGQKRYTFRVRSRFNPLCGSAQHWSEWSHPIHW 229
Query: 574 KTQQGVPSQPR 584
+ + PR
Sbjct: 230 GSNTSKEN-PR 239
Score = 49.4 bits (117), Expect = 2e-06
Identities = 30/236 (12%), Positives = 69/236 (29%), Gaps = 28/236 (11%)
Query: 180 GVIETSTIVKVQCKYAPLLTLPVAPL-DVKISEVTATSVRLDWTYPSETLL--YYVIQYK 236
G +T+ + L++ PL +V+ + W SE + +
Sbjct: 15 GNEDTTADFFLTTMPTDSLSVSTLPLPEVQCFVFNVEYMNCTWQSSSEPQPTNLTLHYWY 74
Query: 237 PKAANTPYSE-----ISGIITTYYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGE 291
+ N + S IT+ ++ + F + + ++ +
Sbjct: 75 KNSDNDKVQKCSHYLFSEEITSGCQLQKKEIHLYQTFVVQLQDPREPRRQATQMLKLQNL 134
Query: 292 TEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQI----------TAKHHRRIGLVETYSL 341
P AP ++ + LS S + + W+ + + + + +SL
Sbjct: 135 VIPW-APENLTLHKLSESQLELNWNNRFLNHCLEHLVQYRTDWDHSWTEQSVDYRHKFSL 193
Query: 342 TGLYPNTLYYIWLAAQSPRGEGATT------PPIPVRTKQYGKTPGFGEQAAKHHR 391
+ Y + ++ G+ PI + + P HH
Sbjct: 194 PSVDGQKRYTFRVRSRFNPLCGSAQHWSEWSHPIHWGSNTSKENP---RTGHHHHH 246
Score = 48.3 bits (114), Expect = 3e-06
Identities = 20/201 (9%), Positives = 50/201 (24%), Gaps = 25/201 (12%)
Query: 715 VPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRS-DSEASIVTLKN 773
V P V C + + +W+ + ++Y + + + + + +
Sbjct: 35 VSTLPLPEVQCFVFNVEYMNCTWQSSSEPQPTNLTLHYWYKNSDNDKVQKCSHYLFSEEI 94
Query: 774 QTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDPSEVCPTQNDFRKNKKTN 833
+ L + + V + + + P +N +
Sbjct: 95 TSGCQLQKKEIHLYQTFVVQLQDPREPRRQATQMLKLQNLVIPW---APENLTLHKLSES 151
Query: 834 ------GSNFKGGYL---------NDPMRFDVSDGGALELNVTGLQPDTIYTIQVAALTR 878
+ F L D + S + ++ + YT +V +
Sbjct: 152 QLELNWNNRFLNHCLEHLVQYRTDWDHSWTEQSVDYRHKFSLPSVDGQKRYTFRVRSRFN 211
Query: 879 KGDGDR------SKPETIKTP 893
G S P +
Sbjct: 212 PLCGSAQHWSEWSHPIHWGSN 232
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 65.2 bits (159), Expect = 4e-12
Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 4/96 (4%)
Query: 100 VRRVPPQFSIPP-PALLEVMLDSPLNLSCVAVGSPMPFVKWRK-GQNIELTPDDKLPVGR 157
+ VPP S+P + SC A GSP P + W + G+ IE L
Sbjct: 92 IVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSN 151
Query: 158 NVLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
LT+ + S+ Y C A + G E ++V
Sbjct: 152 TELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF 187
Score = 59.0 bits (143), Expect = 4e-10
Identities = 17/121 (14%), Positives = 33/121 (27%), Gaps = 7/121 (5%)
Query: 104 PPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRK-GQNIELTPDDKLPV-GRNVLT 161
F E + C SP P V W + + D++ + N L
Sbjct: 2 MLTFREVVSPQ-EFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQ 60
Query: 162 LDRVTESE--NYTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISEVTATSVRL 219
+ + +S+ Y C + V P +++P + +
Sbjct: 61 ILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAER--GEEMTF 118
Query: 220 D 220
Sbjct: 119 S 119
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 62.8 bits (153), Expect = 4e-12
Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 8/96 (8%)
Query: 102 RVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPV----GR 157
+ + P ++ V SC G P+P V W + L+ + V +
Sbjct: 12 TLAARILTKPRSM-TVYEGESARFSCDTDGEPVPTVTWLRK-GQVLSTSARHQVTTTKYK 69
Query: 158 NVLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
+ + V S+ NY+ + + G E + +Q
Sbjct: 70 STFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 105
>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine,
hormone-hormone recep complex; 2.00A {Homo sapiens} PDB:
3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B
3ew3_B 3npz_B 1f6f_B 2lfg_A
Length = 210
Score = 65.1 bits (158), Expect = 5e-12
Identities = 33/206 (16%), Positives = 60/206 (29%), Gaps = 14/206 (6%)
Query: 622 AKPRDLRAVDIQETAVTLAWSKPTHSGEN---IISYELYWNDTYAKAKHHRRIGLVE-TY 677
KP + + T W T G ++Y + + G +
Sbjct: 5 GKPEIFKCRSPNKETFTCWWRPGTDGGLPTNYSLTYHREGETLMHECPDYITGGPNSCHF 64
Query: 678 SLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQNVSCEPL----SSTSI 733
Y + + A + G + + V V PP ++ E +
Sbjct: 65 GKQYTSMWRTYIMMVNATNQMGSS-FSDELYVDVTYIVQPDPPLELAVEVKQPEDRKPYL 123
Query: 734 RISWEPPPV--ERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFVLDELKKWTEYRIW 791
I W PP + ++ + Y+++ +E I QT F + L +Y +
Sbjct: 124 WIKWSPPTLIDLKTGWFTLLYEIRLKPEK--AAEWEIHFAGQQTEFKILSLHPGQKYLVQ 181
Query: 792 VLAGTSIGD-GPSSYPITIRTHEDDP 816
V G S I+ D
Sbjct: 182 VRCKPDHGYWSAWSPATFIQIPSDFT 207
Score = 63.2 bits (153), Expect = 2e-11
Identities = 32/206 (15%), Positives = 51/206 (24%), Gaps = 23/206 (11%)
Query: 715 VPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQ 774
+P P+ C + + W P + + ET + I N
Sbjct: 2 LPPGKPEIFKCRSPNKETFTCWWRPGTDGGLPTNYSLTYHREGETLMHECPDYITGGPNS 61
Query: 775 TSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPI---TIRTHEDDPSEVCPTQNDFRKNKK 831
F W Y + V A +G S T D P E+ K
Sbjct: 62 CHFGKQYTSMWRTYIMMVNATNQMGSSFSDELYVDVTYIVQPDPPLELAVEVKQPEDRKP 121
Query: 832 ------TNGSNFKGGYLNDPMRFDV-------------SDGGALELNVTGLQPDTIYTIQ 872
+ + + +++ G E + L P Y +Q
Sbjct: 122 YLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEIHFAGQQTEFKILSLHPGQKYLVQ 181
Query: 873 VAALTRKGD-GDRSKPETIKTPGGVP 897
V G S I+ P
Sbjct: 182 VRCKPDHGYWSAWSPATFIQIPSDFT 207
Score = 55.5 bits (133), Expect = 1e-08
Identities = 35/243 (14%), Positives = 63/243 (25%), Gaps = 45/243 (18%)
Query: 481 PGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQL 540
P P + R + T W P T G T Y + Y ++ M +
Sbjct: 3 PPGKPEIFKCRSPNKETFTCWW-RPGTDGGLPTNYSLTYHREGETLMHECPDYITGGPNS 61
Query: 541 TTI--SDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPSQPRDLRA----VDIQET 594
+ Y + V A +G + T P P +L + ++
Sbjct: 62 CHFGKQYTSMWRTYIMMVNATNQMGSSFSDELYVDVTYIVQPDPPLELAVEVKQPEDRKP 121
Query: 595 AVTLAWSKPTHSGENIISYELYWNDTYAKPRDLRAVDIQETAVTLAWSKPTHSGENIISY 654
+ + WS PT +G + Y
Sbjct: 122 YLWIKWSPPT-------------------------------------LIDLKTGWFTLLY 144
Query: 655 ELYWNDTYAKAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGE-GATTPPIPVRTKQ 713
E+ A G + + L+P Y + + + G A +P ++
Sbjct: 145 EIRLKPEKAAEWEIHFAGQQTEFKILSLHPGQKYLVQVRCKPDHGYWSAWSPATFIQIPS 204
Query: 714 YVP 716
Sbjct: 205 DFT 207
Score = 50.9 bits (121), Expect = 4e-07
Identities = 23/150 (15%), Positives = 46/150 (30%), Gaps = 13/150 (8%)
Query: 442 FGEQALYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSST---- 497
FG+Q Y + + A + G + T +P P ++ V
Sbjct: 64 FGKQYTSMWRTYIMMVNATNQMGSSFSDELYVDVTYIVQPD-PPLELAVEVKQPEDRKPY 122
Query: 498 MVIQWDEPETPNGQITG----YKVYYTQDQSLPMSAWETQVVDNNQLTTISDLTPHTIYT 553
+ I+W P + + Y++ +++ + WE I L P Y
Sbjct: 123 LWIKWSPPTLIDLKTGWFTLLYEIRLKPEKA---AEWEIHFAGQQTEFKILSLHPGQKYL 179
Query: 554 IRVQAFTSVGP-GPLSAPVLVKTQQGVPSQ 582
++V+ G S ++
Sbjct: 180 VQVRCKPDHGYWSAWSPATFIQIPSDFTMN 209
Score = 50.5 bits (120), Expect = 4e-07
Identities = 30/201 (14%), Positives = 60/201 (29%), Gaps = 28/201 (13%)
Query: 201 PVAPLDVKISEVTATSVRLDWTYPSET------LLYYVIQYKPKAANTPYSEISGIITTY 254
P P K + W ++ L Y + + P G + +
Sbjct: 4 PGKPEIFKCRSPNKETFTCWWRPGTDGGLPTNYSLTYHREGETLMHECPDYITGGPNSCH 63
Query: 255 YTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLSSST---- 310
+ + S + Y + A N +G V T +P P ++ V
Sbjct: 64 FGKQYTSMWRTYIMMVNATNQMGSSFSDELYVDVTYIVQPD-PPLELAVEVKQPEDRKPY 122
Query: 311 MVIQWDEP---ETPNGQITAKHHRRIGLVE-------------TYSLTGLYPNTLYYIWL 354
+ I+W P + G T + R+ + + + L+P Y + +
Sbjct: 123 LWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEIHFAGQQTEFKILSLHPGQKYLVQV 182
Query: 355 AAQSPRGE-GATTPPIPVRTK 374
+ G A +P ++
Sbjct: 183 RCKPDHGYWSAWSPATFIQIP 203
Score = 48.9 bits (116), Expect = 2e-06
Identities = 35/211 (16%), Positives = 65/211 (30%), Gaps = 24/211 (11%)
Query: 103 VPPQFSIPPPALLEVMLDSPLNLSC-----VAVGSPMPFV--KWRKGQNIELTPDDKLPV 155
+PP P + + + +C G P + R+G+ + D +
Sbjct: 2 LPPG----KPEIFKCRSPNKETFTCWWRPGTDGGLPTNYSLTYHREGETLMHECPDYITG 57
Query: 156 GRNVLTLDRVTESENYTCI----AASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISE 211
G N + S T I A + +G + + ++VK E
Sbjct: 58 GPNSCHFGKQYTSMWRTYIMMVNATNQMGSSFSDELYVDVTYIVQPDPPLELAVEVKQPE 117
Query: 212 VTATSVRLDWTYPSET-------LLYYVIQYKPKAANTPYSEISGIITTYYTVRNLSPYT 264
+ + W+ P+ L Y I+ KP+ A +G T + + +L P
Sbjct: 118 DRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEIHFAGQ-QTEFKILSLHPGQ 176
Query: 265 EYEFYIIAVNNLGR-GPPSSPAVITTGETEP 294
+Y + + G S I
Sbjct: 177 KYLVQVRCKPDHGYWSAWSPATFIQIPSDFT 207
>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, cell adhesion; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 108
Score = 62.3 bits (151), Expect = 5e-12
Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 4/101 (3%)
Query: 201 PVAPLDVKISEVTATSVRLDWTYP---SETLLYYVIQYK-PKAANTPYSEISGIITTYYT 256
++P ++ T V L W P + L YV++ + T
Sbjct: 7 GLSPPRGLVAVRTPRGVLLHWDPPELVPKRLDGYVLEGRQGSQGWEVLDPAVAGTETELL 66
Query: 257 VRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTA 297
V L YEF ++A PS+ A ++T ++
Sbjct: 67 VPGLIKDVLYEFRLVAFAGSFVSDPSNTANVSTSGLSGPSS 107
Score = 54.2 bits (130), Expect = 4e-09
Identities = 20/104 (19%), Positives = 32/104 (30%), Gaps = 8/104 (7%)
Query: 480 EPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWET---QVVD 536
+ PR + + +++ WD PE ++ GY + Q WE V
Sbjct: 6 SGLSPPRGLVAVR-TPRGVLLHWDPPELVPKRLDGYVLEGRQGSQ----GWEVLDPAVAG 60
Query: 537 NNQLTTISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVP 580
+ L +Y R+ AF S V T
Sbjct: 61 TETELLVPGLIKDVLYEFRLVAFAGSFVSDPSNTANVSTSGLSG 104
Score = 53.8 bits (129), Expect = 5e-09
Identities = 15/101 (14%), Positives = 32/101 (31%), Gaps = 3/101 (2%)
Query: 716 PGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQT 775
+PP+ + + + + W+PP E + Y L+ + + +T
Sbjct: 7 GLSPPRGLVAVR-TPRGVLLHWDPP--ELVPKRLDGYVLEGRQGSQGWEVLDPAVAGTET 63
Query: 776 SFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDP 816
++ L K Y ++A S + T
Sbjct: 64 ELLVPGLIKDVLYEFRLVAFAGSFVSDPSNTANVSTSGLSG 104
Score = 38.0 bits (88), Expect = 0.002
Identities = 19/95 (20%), Positives = 27/95 (28%), Gaps = 3/95 (3%)
Query: 624 PRDLRAVDIQETAVTLAWSKPTHSGENIISYEL-YWNDTYAKAKHHRRIGLVET-YSLTG 681
PR L V L W P + + Y L + + ET + G
Sbjct: 11 PRGL-VAVRTPRGVLLHWDPPELVPKRLDGYVLEGRQGSQGWEVLDPAVAGTETELLVPG 69
Query: 682 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVP 716
L + LY L A + + V T
Sbjct: 70 LIKDVLYEFRLVAFAGSFVSDPSNTANVSTSGLSG 104
Score = 30.3 bits (68), Expect = 0.95
Identities = 13/45 (28%), Positives = 17/45 (37%)
Query: 853 GGALELNVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKTPGGVP 897
G EL V GL D +Y ++ A D S + T G
Sbjct: 60 GTETELLVPGLIKDVLYEFRLVAFAGSFVSDPSNTANVSTSGLSG 104
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 67.6 bits (165), Expect = 5e-12
Identities = 27/122 (22%), Positives = 45/122 (36%), Gaps = 8/122 (6%)
Query: 72 ARSHARLAAQSVLRRGRLAHAVRQVADPVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVG 131
A SH +SV + + A+ R+ P PA + + L C A G
Sbjct: 177 ATSHIDFITKSVFSK---FSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFG 233
Query: 132 SPMPFVKWRKGQNIELTPDDKLPVGRNVLTLDRVTESE--NYTCIAASVLGVIETSTIVK 189
+P+P +KWRK + K +L + V + Y C A ++ G +
Sbjct: 234 NPVPQIKWRKLDG---SQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRII 290
Query: 190 VQ 191
+
Sbjct: 291 IH 292
Score = 63.0 bits (153), Expect = 2e-10
Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 4/92 (4%)
Query: 102 RVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRNVLT 161
P + E + S L SCVA G P P V+W + L +++ V L
Sbjct: 292 HAQPDWLDVITDT-EADIGSDLRWSCVASGKPRPAVRWLRD-GQPLASQNRIEVSGGELR 349
Query: 162 LDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
++ + Y C+A + G + S + VQ
Sbjct: 350 FSKLVLEDSGMYQCVAENKHGTVYASAELTVQ 381
Score = 56.8 bits (137), Expect = 1e-08
Identities = 20/102 (19%), Positives = 42/102 (41%), Gaps = 7/102 (6%)
Query: 101 RRVPPQFSIPPPALL--EVMLDSPLNLSCVAVGSPMPFVKWRK-GQNIELTPDDKLPVGR 157
R P F P L E + + L+C A +P +W+ G +++ PD + +
Sbjct: 1 RSYGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVA 60
Query: 158 NVLTLDRVTESE---NYTCIAASVLGVIETSTIVKVQCKYAP 196
L + +++ +Y C+A + G + S ++ +
Sbjct: 61 GDLVISNPVKAKDAGSYQCVATNARGTV-VSREASLRFGFLQ 101
Score = 46.0 bits (109), Expect = 4e-05
Identities = 18/96 (18%), Positives = 31/96 (32%), Gaps = 10/96 (10%)
Query: 103 VPPQFSIPPPALLEVMLDSPLNLSCVAV-GSPMPFVKWRKGQNIELTPDDK-----LPVG 156
+FS +++ + +C P +W + P D G
Sbjct: 99 FLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTG 158
Query: 157 RNVLTLDRVTESE--NYTCIAASVLGVIETSTIVKV 190
L + + S+ NY+C A S + I S K
Sbjct: 159 --NLYIAKTEASDLGNYSCFATSHIDFITKSVFSKF 192
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 61.7 bits (150), Expect = 7e-12
Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 5/96 (5%)
Query: 99 PVRRVPPQFSIPPPALLEVMLDSPLNLSCVAV-GSPMPFVKWRKGQNIELTPDDKLPVGR 157
P ++ V + + C A SP + W + N +L G
Sbjct: 4 AAPSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNG- 62
Query: 158 NVLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
+LT+ V S+ Y C +++ + + + + VQ
Sbjct: 63 -ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 97
>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic
receptor, signal transduction cytokine; HET: NAG; 2.80A
{Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A
1gcf_A
Length = 215
Score = 64.8 bits (157), Expect = 8e-12
Identities = 29/212 (13%), Positives = 64/212 (30%), Gaps = 24/212 (11%)
Query: 622 AKPRDLRAV-DIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVE----- 675
A P +L + + ++ W + S+ L + A ++
Sbjct: 6 ASPSNLSCLMHLTTNSLVCQWEPGPETHLPT-SFILKSFRSRADCQYQGDTIPDCVAKKR 64
Query: 676 ----TYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQNVSCEPLS-- 729
+ L IW+ A++ G + +P + + V PP + +
Sbjct: 65 QNNCSIPRKNLLLYQYMAIWVQAENMLGS-SESPKLCLDPMDVVKLEPPMLQALDIGPDV 123
Query: 730 ----STSIRISWEPPPVERSNGHIVYYKLQFVETGRS-DSEASIVTLKNQTSFVLDELKK 784
+ +SW+P S +L++ + + ++ F L L +
Sbjct: 124 VSHQPGCLWLSWKPWK--PSEYMEQECELRYQPQLKGANWTLVFHLPSSKDQFELCGLHQ 181
Query: 785 WTEYRIWVLAGTSIGDGPSSY---PITIRTHE 813
Y + + S G S + +R
Sbjct: 182 APVYTLQMRCIRSSLPGFWSPWSPGLQLRPTM 213
Score = 55.2 bits (132), Expect = 1e-08
Identities = 16/145 (11%), Positives = 41/145 (28%), Gaps = 10/145 (6%)
Query: 442 FGEQALYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLS------S 495
+ L IW+ A++ G + +P + + P +
Sbjct: 70 IPRKNLLLYQYMAIWVQAENMLGS-SESPKLCLDPMDVVKLEPPMLQALDIGPDVVSHQP 128
Query: 496 STMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLTTISDLTPHTIYTIR 555
+ + W + ++ Y + + + L +YT++
Sbjct: 129 GCLWLSWKPWKPSEYMEQECELRYQPQLKGANWTLVFHLPSSKDQFELCGLHQAPVYTLQ 188
Query: 556 VQAFTSVGPGPLSA---PVLVKTQQ 577
++ S PG S + ++
Sbjct: 189 MRCIRSSLPGFWSPWSPGLQLRPTM 213
Score = 54.4 bits (130), Expect = 2e-08
Identities = 35/218 (16%), Positives = 60/218 (27%), Gaps = 47/218 (21%)
Query: 715 VPGAPPQNVSCE-PLSSTSIRISWEPPP----VERSNGHIVYYKLQFVETGRSDSEASIV 769
P A P N+SC L++ S+ WEP P + G + +
Sbjct: 3 YPPASPSNLSCLMHLTTNSLVCQWEPGPETHLPTSFILKSFRSRADCQYQGDTIPDCVAK 62
Query: 770 TLKNQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYP----------------------- 806
+N S L + IWV A +G S
Sbjct: 63 KRQNNCSIPRKNLLLYQYMAIWVQAENMLGSSESPKLCLDPMDVVKLEPPMLQALDIGPD 122
Query: 807 --------ITIRTHEDDPSEVCPTQNDFRKNKKTNGSNFKGGYLNDPMRFDVSDGGALEL 858
+ + PSE + + R + G+N+ +
Sbjct: 123 VVSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLKGANWT--------LVFHLPSSKDQF 174
Query: 859 NVTGLQPDTIYTIQVAALTRKGDG---DRSKPETIKTP 893
+ GL +YT+Q+ + G S ++
Sbjct: 175 ELCGLHQAPVYTLQMRCIRSSLPGFWSPWSPGLQLRPT 212
Score = 54.1 bits (129), Expect = 4e-08
Identities = 26/210 (12%), Positives = 59/210 (28%), Gaps = 36/210 (17%)
Query: 201 PVAPLDVK-ISEVTATSVRLDWTYPSETLLY--YVIQYKPKAAN--------TPYSEISG 249
P +P ++ + +T S+ W ET L ++++ A+
Sbjct: 5 PASPSNLSCLMHLTTNSLVCQWEPGPETHLPTSFILKSFRSRADCQYQGDTIPDCVAKKR 64
Query: 250 IITTYYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLS-- 307
+NL Y ++ A N LG S + + P +
Sbjct: 65 QNNCSIPRKNLLLYQYMAIWVQAENMLGSS-ESPKLCLDPMDVVKLEPPMLQALDIGPDV 123
Query: 308 ----SSTMVIQWDEPETPNG-----QITAKHHRR----------IGLVETYSLTGLYPNT 348
+ + W + ++ + + + + L GL+
Sbjct: 124 VSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLKGANWTLVFHLPSSKDQFELCGLHQAP 183
Query: 349 LYYIWLAAQSPRGEGAT---TPPIPVRTKQ 375
+Y + + G +P + +R
Sbjct: 184 VYTLQMRCIRSSLPGFWSPWSPGLQLRPTM 213
Score = 51.4 bits (122), Expect = 3e-07
Identities = 36/246 (14%), Positives = 67/246 (27%), Gaps = 49/246 (19%)
Query: 481 PGTAPRDVQ-VRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWET------Q 533
P +P ++ + L+++++V QW EP T + + + ++ +T +
Sbjct: 4 PPASPSNLSCLMHLTTNSLVCQW-EPGPETHLPTSFILKSFRSRADCQYQGDTIPDCVAK 62
Query: 534 VVDNNQLTTISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPSQPRDLRAVDIQE 593
NN +L + I VQA +G L P
Sbjct: 63 KRQNNCSIPRKNLLLYQYMAIWVQAENMLGSSESPKLCLDPMDVVKLEPPMLQAL----- 117
Query: 594 TAVTLAWSKPTHSGENIISYELYWNDTYAKPRDLRAVDIQETAVTLAWSKPTHSGENIIS 653
V Q + L+W S
Sbjct: 118 ------------------------------DIGPDVVSHQPGCLWLSWKPWKPSEYMEQE 147
Query: 654 YELYWNDTYAKAKHHRRIGLVET---YSLTGLYPNTLYYIWLAAQSPRGEGAT---TPPI 707
EL + A L + + L GL+ +Y + + G +P +
Sbjct: 148 CELRYQPQLKGANWTLVFHLPSSKDQFELCGLHQAPVYTLQMRCIRSSLPGFWSPWSPGL 207
Query: 708 PVRTKQ 713
+R
Sbjct: 208 QLRPTM 213
Score = 45.6 bits (107), Expect = 3e-05
Identities = 10/101 (9%), Positives = 29/101 (28%), Gaps = 8/101 (7%)
Query: 199 TLPVAPLDVKISEVTATSVRLDWTYPSET---LLYYVIQYKPKAANTPYSEISGIIT--T 253
L + + + L W + ++Y+P+ ++ + + +
Sbjct: 113 MLQALDIGPDVVSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLKGANWTLVFHLPSSKD 172
Query: 254 YYTVRNLSPYTEYEFYIIAVNNLGRG---PPSSPAVITTGE 291
+ + L Y + + + G P S +
Sbjct: 173 QFELCGLHQAPVYTLQMRCIRSSLPGFWSPWSPGLQLRPTM 213
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 66.1 bits (161), Expect = 1e-11
Identities = 24/127 (18%), Positives = 43/127 (33%), Gaps = 9/127 (7%)
Query: 72 ARSHARLAAQSVLRRGRLAHAVRQVADPVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVG 131
+ L+ Q+ ++Q A + P ++ + LNL+C G
Sbjct: 190 HQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVL-GGLPDVVTIQEGKALNLTCNVWG 248
Query: 132 SPMPFVKWRKGQNIELTPDDKLPV-----GRNVLTLDRVTESE--NYTCIAASVLGVIET 184
P P V W K L DD + T++ V+ ++ Y + + G +
Sbjct: 249 DPPPEVSWLKN-EKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETS 307
Query: 185 STIVKVQ 191
V V
Sbjct: 308 DFTVSVF 314
Score = 60.7 bits (147), Expect = 6e-10
Identities = 16/94 (17%), Positives = 30/94 (31%), Gaps = 8/94 (8%)
Query: 103 VPPQFSIPPPALLEVMLDSPLNLSCVAVGS-PMPFVKWRKGQNIELTPDDK--LPVGRNV 159
P F EV + + L C + W K E++ D+K G
Sbjct: 6 TGPHFVEYLSW--EVTGECNVLLKCKVANIKKETHIVWYKD-EREISVDEKHDFKDGICT 62
Query: 160 LTLDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
L + ++ + Y I G ++ + +
Sbjct: 63 LLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE 96
Score = 44.9 bits (106), Expect = 6e-05
Identities = 13/116 (11%), Positives = 25/116 (21%), Gaps = 5/116 (4%)
Query: 104 PPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRK-GQNIELTPDDKLPVGRNVLTL 162
++ + S V V W G I + K V + L
Sbjct: 107 KKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWL 166
Query: 163 --DRVTESE--NYTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISEVTA 214
+ T ++ Y + + + Q + A
Sbjct: 167 QINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRA 222
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 65.5 bits (159), Expect = 1e-11
Identities = 17/114 (14%), Positives = 32/114 (28%), Gaps = 18/114 (15%)
Query: 95 QVADPVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKG------------ 142
+ + P P +EV L S + L C G W+
Sbjct: 199 ITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLG 258
Query: 143 ---QNIELTPDDKLPVGRNVLTLDRVTESE---NYTCIAASVLGVIETSTIVKV 190
++E + + VL + + +TC A + G+ +
Sbjct: 259 EDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 312
Score = 43.2 bits (101), Expect = 2e-04
Identities = 11/116 (9%), Positives = 28/116 (24%), Gaps = 7/116 (6%)
Query: 108 SIPPPALLEVMLDSPLNLSCVAVGSPMPF-VKWRK-GQNIELTPDDK--LPVGRNVLTLD 163
+L + C + + W K ++ + + + L
Sbjct: 8 EREEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFV 67
Query: 164 RVTESE--NYTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISEVTATSV 217
+ +Y C+ + + K + P L + + V
Sbjct: 68 PAKVEDSGHYYCVVRNSSYCLRIKISAKFV-ENEPNLCYNAQAIFKQKLPVAGDGG 122
Score = 42.8 bits (100), Expect = 4e-04
Identities = 20/135 (14%), Positives = 42/135 (31%), Gaps = 14/135 (10%)
Query: 100 VRRVPPQFSIPPPALLE--VMLDSPLNLSC------VAVGSPMPFVKWRKGQNIELTPDD 151
P A+ + + + L C + +P ++W K L +
Sbjct: 96 FVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNI 155
Query: 152 KLPVGRNVLTLDRVTESE--NYTCIAASVLGVIETS----TIVKVQCKYAPLLTLPVAPL 205
++ L + V E NYTC A+ + + P + V+P
Sbjct: 156 HFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPA 215
Query: 206 DVKISEVTATSVRLD 220
+ + + ++L
Sbjct: 216 NETMEVDLGSQIQLI 230
>2b5i_B Interleukin-2 receptor beta chain; four-helix bundle, fibronectin
domain, cytokine-cytokine REC complex; HET: NAG; 2.30A
{Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3qaz_B*
2erj_B*
Length = 214
Score = 64.0 bits (155), Expect = 1e-11
Identities = 24/142 (16%), Positives = 48/142 (33%), Gaps = 6/142 (4%)
Query: 682 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPP 741
L + + + + + + + P ++ + + ISWE
Sbjct: 72 LTTVDIVTLRVLCREGVRW-RVMAIQDFKPFENLRLMAPISLQVVHVETHRCNISWEISQ 130
Query: 742 VERSNGHIVYYKLQFVETGRSDSEASIVTLK-NQTSFVLDELKKWTEYRIWVLAGTSIGD 800
+ ++ + + G + EA ++TLK Q L+ L T+Y V G+
Sbjct: 131 ASHYFERHLEFEARTLSPGHTWEEAPLLTLKQKQEWICLETLTPDTQYEFQVRVKPLQGE 190
Query: 801 G----PSSYPITIRTHEDDPSE 818
P S P+ RT +
Sbjct: 191 FTTWSPWSQPLAFRTKPAALGK 212
Score = 54.4 bits (130), Expect = 3e-08
Identities = 24/191 (12%), Positives = 48/191 (25%), Gaps = 12/191 (6%)
Query: 400 SLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYGKTPGFGEQALYPNTLYYIWLAA 459
++ W + + P Q L + + +
Sbjct: 26 GALQDTSCQVHA-WPDRRRWQQTCELLPVSQASWACNLILGAPDSQKLTTVDIVTLRVLC 84
Query: 460 QSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYY 519
+ + AP +QV + + I W+ + +
Sbjct: 85 REGVRWRVMAIQDFKPFENLRLM-APISLQVVHVETHRCNISWEIS--QASHYFERHLEF 141
Query: 520 TQDQSLPMSAWETQ----VVDNNQLTTISDLTPHTIYTIRVQAFTSVGPG----PLSAPV 571
P WE + + + LTP T Y +V+ G P S P+
Sbjct: 142 EARTLSPGHTWEEAPLLTLKQKQEWICLETLTPDTQYEFQVRVKPLQGEFTTWSPWSQPL 201
Query: 572 LVKTQQGVPSQ 582
+T+ +
Sbjct: 202 AFRTKPAALGK 212
Score = 53.3 bits (127), Expect = 6e-08
Identities = 18/106 (16%), Positives = 34/106 (32%), Gaps = 11/106 (10%)
Query: 201 PVAPLDVKISEVTATSVRLDWTYPS-----ETLLYYVIQYKPKAANTPYSEISGII--TT 253
+AP+ +++ V + W E L + + + + +
Sbjct: 106 LMAPISLQVVHVETHRCNISWEISQASHYFERHLEFEARTLSPGHTWEEAPLLTLKQKQE 165
Query: 254 YYTVRNLSPYTEYEFYIIAVNNLGRG----PPSSPAVITTGETEPG 295
+ + L+P T+YEF + G P S P T G
Sbjct: 166 WICLETLTPDTQYEFQVRVKPLQGEFTTWSPWSQPLAFRTKPAALG 211
Score = 42.1 bits (98), Expect = 3e-04
Identities = 26/133 (19%), Positives = 47/133 (35%), Gaps = 12/133 (9%)
Query: 599 AWSKPTHSGENIISYELYWNDTYAKPRDLRAVDIQETAVTLAWSKP--THSGENIISYEL 656
I ++ + N P L+ V ++ ++W +H E + +E
Sbjct: 84 CREGVRWRVMAIQDFKPFENLRLMAPISLQVVHVETHRCNISWEISQASHYFERHLEFEA 143
Query: 657 YW---NDTYAKAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGAT----TPPIPV 709
T+ +A E L L P+T Y + + +GE T + P+
Sbjct: 144 RTLSPGHTWEEAPLLTLKQKQEWICLETLTPDTQYEFQVRVKPLQGEFTTWSPWSQPLAF 203
Query: 710 RTKQYVPGAPPQN 722
RTK P A ++
Sbjct: 204 RTK---PAALGKD 213
Score = 32.8 bits (74), Expect = 0.35
Identities = 16/121 (13%), Positives = 31/121 (25%), Gaps = 18/121 (14%)
Query: 260 LSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEPE 319
L+ ++ + + AP +QV + + I W+ +
Sbjct: 72 LTTVDIVTLRVLCREGVRWRVMAIQDFKPFENLRLM-APISLQVVHVETHRCNISWEISQ 130
Query: 320 TPN-----------------GQITAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGE 362
+ A E L L P+T Y + + +GE
Sbjct: 131 ASHYFERHLEFEARTLSPGHTWEEAPLLTLKQKQEWICLETLTPDTQYEFQVRVKPLQGE 190
Query: 363 G 363
Sbjct: 191 F 191
Score = 31.3 bits (70), Expect = 1.0
Identities = 25/208 (12%), Positives = 47/208 (22%), Gaps = 28/208 (13%)
Query: 720 PQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQF--------VETGRSDSEASIVTL 771
+C S I W + V+ + S A + L
Sbjct: 5 TSQFTCFYNSRAQISCVWSQDGALQDTSCQVHAWPDRRRWQQTCELLPVSQASWACNLIL 64
Query: 772 KNQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDPSEVCPTQNDFRKNKK 831
S L + T + + P + + +
Sbjct: 65 GAPDSQKLTTVDIVTLRVLCREGVRWRVMAIQDFKPFENLRLMAPISLQVVHVETHRCNI 124
Query: 832 TNGSNFKGGYLNDPMRFDVS----------------DGGALELNVTGLQPDTIYTIQVAA 875
+ + Y + F+ + + L PDT Y QV
Sbjct: 125 SWEISQASHYFERHLEFEARTLSPGHTWEEAPLLTLKQKQEWICLETLTPDTQYEFQVRV 184
Query: 876 LTRKGDGDR----SKPETIKTPGGVPNR 899
+G+ S+P +T +
Sbjct: 185 KPLQGEFTTWSPWSQPLAFRTKPAALGK 212
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 61.3 bits (149), Expect = 1e-11
Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 10/107 (9%)
Query: 102 RVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRK-GQNIELTPDDKL----PVG 156
+ P F I P +V+ + L C P P + W++ + ++ D G
Sbjct: 13 KRAPMF-IYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTG 71
Query: 157 RNVLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQCKYAPLLTLP 201
R L + V + + YT A + GV +T + V + P TLP
Sbjct: 72 RVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTAR--PNQTLP 116
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 63.7 bits (155), Expect = 2e-11
Identities = 24/119 (20%), Positives = 43/119 (36%), Gaps = 11/119 (9%)
Query: 103 VPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRK-GQNIELTPDDKLPV---GRN 158
PP+F+ P + + C A G P P + W K G+ + + + +
Sbjct: 5 TPPRFTRTPVDQ-TGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGS 63
Query: 159 VLTLDRVTESE---NYTCIAASVLGVIETSTIVKVQCKYAPLLTLPV---APLDVKISE 211
VL + + Y C+A++ +G I ST + V + P P +
Sbjct: 64 VLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVER 122
Score = 53.7 bits (129), Expect = 4e-08
Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 9/100 (9%)
Query: 95 QVADPVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRK-GQNIELTPDDK- 152
D + R P P L V + C A G+P P + W K ++ + ++
Sbjct: 99 LREDQIPRGFPTI-DMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGR 157
Query: 153 ----LPVGRNVLTLDRVTESE--NYTCIAASVLGVIETST 186
L +++ ES+ Y C+A + G ++
Sbjct: 158 IKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAP 197
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 63.7 bits (155), Expect = 2e-11
Identities = 23/127 (18%), Positives = 42/127 (33%), Gaps = 9/127 (7%)
Query: 72 ARSHARLAAQSVLRRGRLAHAVRQVADPVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVG 131
+ L+ Q+ ++Q A + P ++ + LNL+C G
Sbjct: 85 HQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVL-GGLPDVVTIQEGKALNLTCNVWG 143
Query: 132 SPMPFVKWRKGQNIELTPDDKLPV-----GRNVLTLDRVTESE--NYTCIAASVLGVIET 184
P P V W K L D + T++ V+ ++ Y + + G +
Sbjct: 144 DPPPEVSWLKN-EKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETS 202
Query: 185 STIVKVQ 191
V V
Sbjct: 203 DFTVSVF 209
Score = 40.2 bits (94), Expect = 0.001
Identities = 9/72 (12%), Positives = 20/72 (27%), Gaps = 7/72 (9%)
Query: 126 SCVAVGSPMPFVKWRKGQNIELTPDDKLPV----GRNVLTLDRVTESE--NYTCIAASVL 179
S V V W + D++ + L ++ T ++ Y
Sbjct: 24 SFVTYYVEDLKVNWSHN-GSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGK 82
Query: 180 GVIETSTIVKVQ 191
+ + + Q
Sbjct: 83 TGHQKTVDLSGQ 94
>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine,
ligand-receptor complex, signaling protein-cytokin; HET:
NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1
Length = 313
Score = 65.3 bits (158), Expect = 2e-11
Identities = 27/206 (13%), Positives = 59/206 (28%), Gaps = 21/206 (10%)
Query: 630 VDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVE--------TYSLTG 681
+++ +++ W + + I +
Sbjct: 109 MNLTTSSLICQWEPGPETHLPTSFTLKSFKSRGNCQTQGDSILDCVPKDGQSHCSIPRKH 168
Query: 682 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQNVSCEPL------SSTSIRI 735
L IW+ A++ G + +P + + V PP + +P + +++
Sbjct: 169 LLLYQNMGIWVQAENALGT-SMSPQLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQL 227
Query: 736 SWEPPPVERSNGHIVYYKLQF-VETGRSDSEASIVTLKNQTSFVLDELKKWTEYRIWVLA 794
SWEP +L+ + G + + L L T Y + +
Sbjct: 228 SWEPWQ--PGLHINQKCELRHKPQRGEASWALVGPLPLEALQYELCGLLPATAYTLQIRC 285
Query: 795 GTSIGDGPSSY---PITIRTHEDDPS 817
G S + +RT E +
Sbjct: 286 IRWPLPGHWSDWSPSLELRTTERAAA 311
Score = 61.5 bits (148), Expect = 4e-10
Identities = 48/314 (15%), Positives = 94/314 (29%), Gaps = 48/314 (15%)
Query: 109 IPPPALLEVMLDSPLNLSCVA-----VGSPMPFVKWRKGQNIELTPDDKLPVGRN---VL 160
I A + V L P+ SC+ P P + WR G ++ + ++
Sbjct: 5 ISVSAPI-VHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPGGRQQRLSDGTQESII 63
Query: 161 TLDRVTESE-NYTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISEVTATSVRL 219
TL + ++ +C ++ V+++ Y P + ++ + +T +S+
Sbjct: 64 TLPHLNHTQAFLSCSLNWG-NSLQILDQVELRAGYPPAIPHNLS----CLMNLTTSSLIC 118
Query: 220 DWTYPSETLLY--YVIQYKPKAAN--------TPYSEISGIITTYYTVRNLSPYTEYEFY 269
W ET L + ++ N G ++L Y +
Sbjct: 119 QWEPGPETHLPTSFTLKSFKSRGNCQTQGDSILDCVPKDGQSHCSIPRKHLLLYQNMGIW 178
Query: 270 IIAVNNLGRGPPSSPAVITTGETEPG-----TAPRDVQVRPLSSSTMVIQWDEPETPNGQ 324
+ A N LG + + T + P + + + W+ +
Sbjct: 179 VQAENALGTSMSPQLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLHI 238
Query: 325 I---------------TAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEG---ATT 366
A Y L GL P T Y + + G +
Sbjct: 239 NQKCELRHKPQRGEASWALVGPLPLEALQYELCGLLPATAYTLQIRCIRWPLPGHWSDWS 298
Query: 367 PPIPVRTKQYGKTP 380
P + +RT + P
Sbjct: 299 PSLELRTTERAAAP 312
Score = 61.1 bits (147), Expect = 4e-10
Identities = 26/199 (13%), Positives = 66/199 (33%), Gaps = 17/199 (8%)
Query: 397 ETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYGKTPGFGEQALYPNTLYYIW 456
E T L + + + + + +G + + Q + + L IW
Sbjct: 121 EPGPETHLPTSFTLKSFKSRGNCQTQGDSILDCVPKDGQSHCS--IPRKHLLLYQNMGIW 178
Query: 457 LAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPL------SSSTMVIQWDEPETPNG 510
+ A++ G + +P + + P + P + + + W+ +
Sbjct: 179 VQAENALGT-SMSPQLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLH 237
Query: 511 QITGYKVYYTQDQSLPMSAWETQVVDNNQLT--TISDLTPHTIYTIRVQAFTSVGPG--- 565
++ + + ++W + + L P T YT++++ PG
Sbjct: 238 INQKCELRHKPQRG--EASWALVGPLPLEALQYELCGLLPATAYTLQIRCIRWPLPGHWS 295
Query: 566 PLSAPVLVKTQQGVPSQPR 584
S + ++T + + PR
Sbjct: 296 DWSPSLELRTTERAAA-PR 313
Score = 53.0 bits (126), Expect = 2e-07
Identities = 38/213 (17%), Positives = 66/213 (30%), Gaps = 31/213 (14%)
Query: 716 PGAPPQNVSCE-PLSSTSIRISWEPPPVE--RSNGHIVYYKLQFVETGRSDSEASIV--T 770
P A P N+SC L+++S+ WEP P ++ + +K + + DS V
Sbjct: 98 PPAIPHNLSCLMNLTTSSLICQWEPGPETHLPTSFTLKSFKSRGNCQTQGDSILDCVPKD 157
Query: 771 LKNQTSFVLDELKKWTEYRIWVLAGTSIGDGPSS---YPITIRTHEDDPSEVCPTQNDFR 827
++ S L + IWV A ++G S + P +
Sbjct: 158 GQSHCSIPRKHLLLYQNMGIWVQAENALGTSMSPQLCLDPMDVVKLEPPMLRTMDPSPEA 217
Query: 828 KNKKTNGSNFKGGYLNDPMRFD--------------------VSDGGALELNVTGLQPDT 867
+ + + AL+ + GL P T
Sbjct: 218 APPQAGCLQLSWEPWQPGLHINQKCELRHKPQRGEASWALVGPLPLEALQYELCGLLPAT 277
Query: 868 IYTIQVAALTRKGDG---DRSKPETIKTPGGVP 897
YT+Q+ + G D S ++T
Sbjct: 278 AYTLQIRCIRWPLPGHWSDWSPSLELRTTERAA 310
Score = 52.6 bits (125), Expect = 2e-07
Identities = 20/109 (18%), Positives = 35/109 (32%), Gaps = 10/109 (9%)
Query: 199 TLPVAPLDVKISEVTATSVRLDWTYPSETL---LYYVIQYKPKAANTPYSEISGIIT--T 253
L + + A ++L W L +++KP+ ++ + +
Sbjct: 207 MLRTMDPSPEAAPPQAGCLQLSWEPWQPGLHINQKCELRHKPQRGEASWALVGPLPLEAL 266
Query: 254 YYTVRNLSPYTEYEFYIIAVNNLGRG---PPSSPAVITTGETEPGTAPR 299
Y + L P T Y I + G S + T E APR
Sbjct: 267 QYELCGLLPATAYTLQIRCIRWPLPGHWSDWSPSLELRTTERAA--APR 313
Score = 51.9 bits (123), Expect = 4e-07
Identities = 36/250 (14%), Positives = 65/250 (26%), Gaps = 49/250 (19%)
Query: 481 PGTAPRDVQ-VRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQ 539
P P ++ + L++S+++ QW EP T + + + + + ++ + +
Sbjct: 98 PPAIPHNLSCLMNLTTSSLICQW-EPGPETHLPTSFTLKSFKSRGNCQTQGDSILDCVPK 156
Query: 540 LT------TISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPSQPRDLRAVDIQE 593
L + I VQA ++G L P E
Sbjct: 157 DGQSHCSIPRKHLLLYQNMGIWVQAENALGTSMSPQLCLDPMDVVKLEPPMLRTMDPSPE 216
Query: 594 TAVTLAWSKPTHSGENIISYELYWNDTYAKPRDLRAVDIQETAVTLAWSKPTHSGENIIS 653
A Q + L+W
Sbjct: 217 -----------------------------------AAPPQAGCLQLSWEPWQPGLHINQK 241
Query: 654 YELYW---NDTYAKAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEG---ATTPPI 707
EL + A Y L GL P T Y + + G +P +
Sbjct: 242 CELRHKPQRGEASWALVGPLPLEALQYELCGLLPATAYTLQIRCIRWPLPGHWSDWSPSL 301
Query: 708 PVRTKQYVPG 717
+RT +
Sbjct: 302 ELRTTERAAA 311
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 60.1 bits (146), Expect = 2e-11
Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 9/98 (9%)
Query: 102 RVPPQFSIPP---PALLEVMLDSPLNLSCVAVGSPMPFVKWRK-GQNIELTPDD---KLP 154
+ P ++ L V + + C A G+PMP ++W K G+ + K+
Sbjct: 2 KRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVR 61
Query: 155 VGRNVLTLDRVTESE--NYTCIAASVLGVIETSTIVKV 190
L ++ V S+ NYTC+ + G I + + V
Sbjct: 62 NQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 65.0 bits (158), Expect = 3e-11
Identities = 27/133 (20%), Positives = 44/133 (33%), Gaps = 9/133 (6%)
Query: 68 PTRAARSHARLAAQSVLRRGRLAHAVRQVADPVRRVPPQFSIPP---PALLEVMLDSPLN 124
R + + V P ++ P LL V + +
Sbjct: 83 TQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVR 142
Query: 125 LSCVAVGSPMPFVKWRK-GQNIELTPDD---KLPVGRNVLTLDRVTESE--NYTCIAASV 178
C A G+P P + W K G+ KL + L ++ V S+ NYTC+ +
Sbjct: 143 FRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENK 202
Query: 179 LGVIETSTIVKVQ 191
G I + + V
Sbjct: 203 FGSIRQTYTLDVL 215
Score = 56.9 bits (137), Expect = 1e-08
Identities = 25/115 (21%), Positives = 38/115 (33%), Gaps = 19/115 (16%)
Query: 95 QVADPVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQ---NIELTPDD 151
V + P PA +L S + C P ++W K ++ PD
Sbjct: 213 DVLERSPHRPILQ-AGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDG 271
Query: 152 KLPV-------------GRNVLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
V VL+L VT + YTC+A + +G S + V
Sbjct: 272 TPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVL 326
Score = 54.6 bits (131), Expect = 6e-08
Identities = 18/90 (20%), Positives = 29/90 (32%), Gaps = 4/90 (4%)
Query: 104 PPQFSIPPPALLEVMLDSPLNLSCVAV-GSPMPFVKWRKGQNIELTPDDKLPVGRNVLTL 162
P L + LSC G PM W K L P +++ VG L +
Sbjct: 7 VPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKD-GTGLVPSERVLVGPQRLQV 65
Query: 163 DRVTESE--NYTCIAASVLGVIETSTIVKV 190
+ + Y+C V+ ++
Sbjct: 66 LNASHEDSGAYSCRQRLTQRVLCHFSVRVT 95
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 63.4 bits (154), Expect = 3e-11
Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 11/101 (10%)
Query: 101 RRVPPQFSIPP---PALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPV-- 155
+ P ++ L V + + C A G+PMP ++W K E + ++
Sbjct: 12 NKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKN-GKEFKQEHRIGGYK 70
Query: 156 ---GRNVLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
L ++ V S+ NYTC+ + G I + + V
Sbjct: 71 VRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV 111
Score = 58.8 bits (142), Expect = 9e-10
Identities = 24/118 (20%), Positives = 37/118 (31%), Gaps = 17/118 (14%)
Query: 90 AHAVRQVADPVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKG--QNIEL 147
V + R P PA ++ + C P ++W K +N
Sbjct: 104 HTYHLDVVERSRHRPILQ-AGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSK 162
Query: 148 TPDDKLPV------------GRNVLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
D LP VL L VTE++ Y C ++ +G S + V
Sbjct: 163 YGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVL 220
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 59.7 bits (145), Expect = 3e-11
Identities = 20/98 (20%), Positives = 32/98 (32%), Gaps = 11/98 (11%)
Query: 97 ADPVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRK-GQNIELTPDDKLPV 155
+ Q + P V + L+C P P + W K G + L P
Sbjct: 3 SGSSGLEEVQLVVEP-EGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPS----- 56
Query: 156 GRNVLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
VL L + + Y+C+A + S V +
Sbjct: 57 --PVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSIS 92
>3mpc_A FN3-like protein; fibronectin, FN(III), unknown function; 1.60A
{Clostridium thermocellum}
Length = 103
Score = 59.7 bits (145), Expect = 3e-11
Identities = 20/95 (21%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
Query: 197 LLTLPVAPLDVK-ISEVTATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEI-SGIITTY 254
+++ P P + + + + + L W Y V + + PY+ I + I +T
Sbjct: 1 MVSAPAFPTGLSAVLDSSGNTANLTWNAAPGANSYNV--KRSTKSGGPYTTIATNITSTN 58
Query: 255 YTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITT 289
YT ++ T+Y + + AV+N S+ A++
Sbjct: 59 YTDTGVATGTKYYYVVSAVSNGVETLNSAEAILQY 93
Score = 41.6 bits (98), Expect = 8e-05
Identities = 16/94 (17%), Positives = 29/94 (30%), Gaps = 7/94 (7%)
Query: 483 TAPRDVQVRPLSSSTMV-IQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLT 541
P + SS + W+ Y V + P + T + N
Sbjct: 6 AFPTGLSAVLDSSGNTANLTWNAAPG----ANSYNVKRSTKSGGPYTTIATNITSTN--Y 59
Query: 542 TISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKT 575
T + + T Y V A ++ SA +++
Sbjct: 60 TDTGVATGTKYYYVVSAVSNGVETLNSAEAILQY 93
Score = 35.8 bits (83), Expect = 0.009
Identities = 19/92 (20%), Positives = 30/92 (32%), Gaps = 6/92 (6%)
Query: 622 AKPRDLRAVDIQ-ETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVET-YSL 679
A P L AV L W+ SY + + + T Y+
Sbjct: 6 AFPTGLSAVLDSSGNTANLTWNAAP----GANSYNVKRSTKSGGPYTTIATNITSTNYTD 61
Query: 680 TGLYPNTLYYIWLAAQSPRGEGATTPPIPVRT 711
TG+ T YY ++A S E + ++
Sbjct: 62 TGVATGTKYYYVVSAVSNGVETLNSAEAILQY 93
Score = 30.8 bits (70), Expect = 0.41
Identities = 17/95 (17%), Positives = 34/95 (35%), Gaps = 8/95 (8%)
Query: 718 APPQNVSCEPLSS-TSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTS 776
A P +S SS + ++W +N + V T +I T T+
Sbjct: 6 AFPTGLSAVLDSSGNTANLTWNA--APGANSYNVKRS-----TKSGGPYTTIATNITSTN 58
Query: 777 FVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRT 811
+ + T+Y V A ++ + +S ++
Sbjct: 59 YTDTGVATGTKYYYVVSAVSNGVETLNSAEAILQY 93
Score = 29.7 bits (67), Expect = 1.4
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 860 VTGLQPDTIYTIQVAALTRKGDGDRSKPETIKTPG 894
TG+ T Y V+A++ + S ++ P
Sbjct: 61 DTGVATGTKYYYVVSAVSNGVETLNSAEAILQYPK 95
Score = 27.8 bits (62), Expect = 6.2
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 338 TYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRT 373
Y+ TG+ T YY ++A S E + ++
Sbjct: 58 NYTDTGVATGTKYYYVVSAVSNGVETLNSAEAILQY 93
Score = 27.8 bits (62), Expect = 6.2
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 398 TYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRT 433
Y+ TG+ T YY ++A S E + ++
Sbjct: 58 NYTDTGVATGTKYYYVVSAVSNGVETLNSAEAILQY 93
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 60.1 bits (146), Expect = 3e-11
Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 8/95 (8%)
Query: 104 PPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRK-GQNIELTPD----DKLPVGRN 158
P F + ++ P+ +C G+P P + W K G+ I D + G
Sbjct: 8 APFFEMKL-KHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTC 66
Query: 159 VLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
L T + NYT +AA+ G I + + VQ
Sbjct: 67 SLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQ 101
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 61.4 bits (149), Expect = 3e-11
Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 7/105 (6%)
Query: 93 VRQVADPVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRK-GQNIELTPDD 151
+ +VA+ V P F+ + EV+ S C G P P V W K ++ +
Sbjct: 30 LEEVAEEKPHVKPYFTKTILDM-EVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHF 88
Query: 152 KL---PVGRNVLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
++ G LT+ V + YTC A + LG + + V+
Sbjct: 89 QIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVE 133
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 65.3 bits (159), Expect = 3e-11
Identities = 28/121 (23%), Positives = 48/121 (39%), Gaps = 6/121 (4%)
Query: 76 ARLAAQSVLRRGRLAHAVRQVADPVRRVPPQFSIPP--PALLEVMLDSPLNLSCVAVGSP 133
AR +++ V P F P + V+ L L C+A G P
Sbjct: 191 ARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVP 250
Query: 134 MPFVKWRK-GQNIELTPDDKLPVGRNVLTLDRVTESE--NYTCIAASVLGVIETSTIVKV 190
P + W K G ++ + K L + V+E + Y C+A++ +G I + V+V
Sbjct: 251 TPDIAWYKKGGDLP-SDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRV 309
Query: 191 Q 191
+
Sbjct: 310 K 310
Score = 60.3 bits (146), Expect = 1e-09
Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 5/94 (5%)
Query: 102 RVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRK-GQNIELTPDDK-LPVGRNV 159
+ P + P L + L C A G+P P V+W G+ ++ P + V +
Sbjct: 310 KAAPYWLDEPKNL-ILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDT 368
Query: 160 LTLDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
+ S Y C ++ G + + V V
Sbjct: 369 IIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVL 402
Score = 59.1 bits (143), Expect = 3e-09
Identities = 20/103 (19%), Positives = 37/103 (35%), Gaps = 10/103 (9%)
Query: 103 VPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRK-GQNIELTPDDKLPVGRN--V 159
PP + V + + C A G+P P W + + + D ++ + R
Sbjct: 15 QPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGT 74
Query: 160 LTLDRVTESEN------YTCIAASVLGVIETSTIVKVQCKYAP 196
L +D + Y C A + G S +++Q +P
Sbjct: 75 LVIDFRSGGRPEEYEGEYQCFARNKFGTA-LSNRIRLQVSKSP 116
Score = 48.3 bits (115), Expect = 7e-06
Identities = 19/83 (22%), Positives = 29/83 (34%), Gaps = 5/83 (6%)
Query: 103 VPPQFSIPPPALLEVMLDSPLNLSCVAV-GSPMPFVKWRKGQNIELTPDDKLPVGRN-VL 160
P + + V +PL L C G P P + W +T D ++ G N L
Sbjct: 114 KSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDL 173
Query: 161 TLDRVTESE---NYTCIAASVLG 180
V + +Y+C A
Sbjct: 174 YFSNVMLQDMQTDYSCNARFHFT 196
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 62.0 bits (151), Expect = 4e-11
Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 10/97 (10%)
Query: 103 VPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDK------LPVG 156
+ P F L V S L C G P P VKW + E+ D G
Sbjct: 3 MAPHF-KEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQ-GKEIIADGLKYRIQEFKGG 60
Query: 157 RNVLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
+ L + VT+ + Y A + G + + ++V+
Sbjct: 61 YHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVE 97
Score = 62.0 bits (151), Expect = 5e-11
Identities = 15/104 (14%), Positives = 38/104 (36%), Gaps = 9/104 (8%)
Query: 95 QVADPVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLP 154
+V P + P+ + + + +++ G P P + W+KG + +
Sbjct: 95 EVEVPAKIHLPKT-LEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKG-QDLIDNNGHYQ 152
Query: 155 V-----GRNVLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
V +++ + V + Y A + G+ + + + V
Sbjct: 153 VIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA 196
>2b5i_C Cytokine receptor common gamma chain; four-helix bundle,
fibronectin domain, cytokine-cytokine REC complex; HET:
NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB:
3bpl_C* 3qb7_C* 3qaz_C*
Length = 199
Score = 62.1 bits (150), Expect = 4e-11
Identities = 21/146 (14%), Positives = 49/146 (33%), Gaps = 13/146 (8%)
Query: 678 SLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISW 737
L + + Q PR + ++ + V P+N++ LS + + ++W
Sbjct: 61 QLQKKEIHLYQTFVVQLQDPREPRRQATQM-LKLQNLVIPWAPENLTLHKLSESQLELNW 119
Query: 738 EPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFVLDELKKWTEYRIWVLAGTS 797
+ H+V Y+ D + ++ + F L + Y V + +
Sbjct: 120 NNRFLNHCLEHLVQYRTD------WDHSWTEQSVDYRHKFSLPSVDGQKRYTFRVRSRFN 173
Query: 798 IGDGPSSY------PITIRTHEDDPS 817
G + + PI ++ +
Sbjct: 174 PLCGSAQHWSEWSHPIHWGSNTSKEN 199
Score = 56.3 bits (135), Expect = 4e-09
Identities = 23/122 (18%), Positives = 41/122 (33%), Gaps = 6/122 (4%)
Query: 445 QALYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDE 504
Q + + Q PR + P AP ++ + LS S + + W+
Sbjct: 63 QKKEIHLYQTFVVQLQDPREPRRQATQMLKLQNLVIPW-APENLTLHKLSESQLELNWNN 121
Query: 505 PETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVGP 564
+ + V Y D +W Q VD ++ + YT RV++ +
Sbjct: 122 RFLNHCLE--HLVQYRTDWD---HSWTEQSVDYRHKFSLPSVDGQKRYTFRVRSRFNPLC 176
Query: 565 GP 566
G
Sbjct: 177 GS 178
Score = 42.0 bits (98), Expect = 3e-04
Identities = 19/199 (9%), Positives = 51/199 (25%), Gaps = 29/199 (14%)
Query: 719 PPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQT--- 775
P V C + + +W+ + ++Y + + + + + + T
Sbjct: 1 PLPEVQCFVFNVEYMNCTWQSSSEPQPTNLTLHYWYKNSDNDKVQKCSHYLFSEEITSGC 60
Query: 776 SFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDPSEVCPTQNDFRKNKKTN-- 833
E+ + + + + + + + P +N +
Sbjct: 61 QLQKKEIHLYQTFVVQLQD--PREPRRQATQMLKLQNLVIPW---APENLTLHKLSESQL 115
Query: 834 ----GSNFKGGYL---------NDPMRFDVSDGGALELNVTGLQPDTIYTIQVAALTRKG 880
+ F L D + S + ++ + YT +V +
Sbjct: 116 ELNWNNRFLNHCLEHLVQYRTDWDHSWTEQSVDYRHKFSLPSVDGQKRYTFRVRSRFNPL 175
Query: 881 DGDR------SKPETIKTP 893
G S P +
Sbjct: 176 CGSAQHWSEWSHPIHWGSN 194
Score = 41.7 bits (97), Expect = 4e-04
Identities = 15/137 (10%), Positives = 41/137 (29%), Gaps = 12/137 (8%)
Query: 242 TPYSEISGIITTYYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDV 301
+ Y I T+ ++ + F + + ++ + P AP ++
Sbjct: 48 SHYLFSEEI-TSGCQLQKKEIHLYQTFVVQLQDPREPRRQATQMLKLQNLVIPW-APENL 105
Query: 302 QVRPLSSSTMVIQWDEPETPNGQI----------TAKHHRRIGLVETYSLTGLYPNTLYY 351
+ LS S + + W+ + + + + +SL + Y
Sbjct: 106 TLHKLSESQLELNWNNRFLNHCLEHLVQYRTDWDHSWTEQSVDYRHKFSLPSVDGQKRYT 165
Query: 352 IWLAAQSPRGEGATTPP 368
+ ++ G+
Sbjct: 166 FRVRSRFNPLCGSAQHW 182
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 59.3 bits (144), Expect = 5e-11
Identities = 25/104 (24%), Positives = 40/104 (38%), Gaps = 8/104 (7%)
Query: 94 RQVADPVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKL 153
+ + + PP F P + V+ + L CV +G P P V W KG +L ++L
Sbjct: 3 MKASSGDQGSPPCFLRFPRPV-RVVSGAEAELKCVVLGEPPPVVVWEKG-GQQLAASERL 60
Query: 154 PV----GRNVLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
+ L L ++ Y C A + G + V V
Sbjct: 61 SFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVL 104
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 64.5 bits (157), Expect = 5e-11
Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 4/91 (4%)
Query: 102 RVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRNVLT 161
P++ P ++ V + + C G P P V W N + + V + L
Sbjct: 306 VSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSH--NAKPLSGGRATVTDSGLV 363
Query: 162 LDRVTESE--NYTCIAASVLGVIETSTIVKV 190
+ V + Y C A + G T+V+V
Sbjct: 364 IKGVKNGDKGYYGCRATNEHGDKYFETLVQV 394
Score = 62.2 bits (151), Expect = 3e-10
Identities = 14/107 (13%), Positives = 35/107 (32%), Gaps = 9/107 (8%)
Query: 93 VRQVADPVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRK-GQNIELTPDD 151
+ + P + + C+ +PM + + K G+++ P+D
Sbjct: 201 GVTKDNSGYKGEPVPQYVSKDM-MAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPED 259
Query: 152 KLP----VGRNVLTLDRVTESE--NYTCIAASVLGVIETSTI-VKVQ 191
++ L + YTC + +G + ++ + V
Sbjct: 260 RITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVV 306
Score = 54.9 bits (132), Expect = 7e-08
Identities = 19/110 (17%), Positives = 35/110 (31%), Gaps = 7/110 (6%)
Query: 103 VPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPF-VKWRK-GQNIELTPDDKLPVGRN-V 159
P P + ++P L C+ G+ W+K G++ +
Sbjct: 5 KYPVLKDQPAEV-LFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGS 63
Query: 160 LTLDRVTESE--NYTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDV 207
L R S+ +Y C A + GV +S ++ + Y
Sbjct: 64 LVFLRPQASDEGHYQCFAETPAGVA-SSRVISFRKTYLIASPAKTHEKTP 112
Score = 43.4 bits (102), Expect = 3e-04
Identities = 19/134 (14%), Positives = 36/134 (26%), Gaps = 15/134 (11%)
Query: 92 AVRQVADPVRRVPPQFSIPPPALLEVMLDSPLNLSC-VAVGSPMPFVKWRKGQNIELTPD 150
A +V + + P L C + P P + W+K +
Sbjct: 88 ASSRVISFRKTYLIASPAKTHEK-TPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNA 146
Query: 151 DKLPVGRNV-------LTLDRVTESE-----NYTCIAASVLG-VIETSTIVKVQCKYAPL 197
D R + L VT+ + Y C A + +++
Sbjct: 147 DVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDN 206
Query: 198 LTLPVAPLDVKISE 211
P+ +S+
Sbjct: 207 SGYKGEPVPQYVSK 220
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic adhesion,
arterial smooth muscle cells; 0.96A {Homo sapiens}
Length = 99
Score = 59.2 bits (144), Expect = 5e-11
Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 9/97 (9%)
Query: 102 RVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDK-----LPVG 156
+ PP F + V + +S G P P V W + + PD + G
Sbjct: 3 KAPPTFKVSL-MDQSVREGQDVIMSIRVQGEPKPVVSWLRN-RQPVRPDQRRFAEEAEGG 60
Query: 157 RNVLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
L + + YTC A + G + ++V+
Sbjct: 61 LCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVR 97
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 62.6 bits (152), Expect = 6e-11
Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 9/102 (8%)
Query: 99 PVRRVPPQFSIPP---PALLEVMLDSPLNLSCVAVGSPMPFVKWRK-GQNIELTPDDK-- 152
V P ++ P LL V + + C A G+P P + W K G+
Sbjct: 6 GVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGI 65
Query: 153 -LPVGRNVLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
L + L ++ V S+ NYTC+ + G I + + V
Sbjct: 66 KLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVL 107
Score = 58.4 bits (141), Expect = 2e-09
Identities = 24/119 (20%), Positives = 38/119 (31%), Gaps = 18/119 (15%)
Query: 90 AHAVRQVADPVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNI---E 146
V + P PA +L S + C P ++W K + +
Sbjct: 100 QTYTLDVLERSPHRPILQ-AGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSK 158
Query: 147 LTPDDKLPV------------GRNVLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
+ PD V L L V+E + Y C A + +GV E + + V
Sbjct: 159 VGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVH 217
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 59.3 bits (144), Expect = 7e-11
Identities = 25/100 (25%), Positives = 38/100 (38%), Gaps = 7/100 (7%)
Query: 103 VPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRK-GQNIELTPDDKL---PVGRN 158
P F P L V + C G P P + W+ G+ + K+ G +
Sbjct: 8 FRPHFLQAPGDL-TVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVH 66
Query: 159 VLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQCKYAP 196
L ++ VT + YTCIA + G S + V K +
Sbjct: 67 SLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESG 106
>4doh_B Interleukin-20 receptor subunit beta; IL10 family cytokine receptor
complex, alpha helical cytokin beta sandwhich receptor
fold, signaling complex; HET: NAG; 2.80A {Homo sapiens}
Length = 206
Score = 62.0 bits (150), Expect = 7e-11
Identities = 24/203 (11%), Positives = 46/203 (22%), Gaps = 19/203 (9%)
Query: 622 AKPRDLRAVDIQETAVTLAWSKPTHSGENII--------SYELYWNDTYAKAKHHRRIGL 673
P+ L V L WS GE + LY + + +
Sbjct: 8 PAPQQLS-VLSTNMKHLLMWSPVIAPGETVYYSVEYQGEYESLYTSHIWIPSSWCSLTEG 66
Query: 674 VETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSI 733
E + Y + + A A + +Q P + +
Sbjct: 67 PECDVTDDITATVPYNLRVRATLGSQTSAWSILKHPFNRQSTILTRP-GMEITK-DGFHL 124
Query: 734 RISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFVLDELKKWTEYRIWVL 793
I E G + + + E + L+ ++ Y +
Sbjct: 125 VIELEDL------GPQFEFLVAYWRREPGAEEHVKMVRSGGIPVHLETMEPGAAYCVKAQ 178
Query: 794 AGTSIGDGPS--SYPITIRTHED 814
S S + +
Sbjct: 179 TFVKAIGRYSAFSQTECVEVQGE 201
Score = 53.2 bits (127), Expect = 6e-08
Identities = 25/196 (12%), Positives = 55/196 (28%), Gaps = 22/196 (11%)
Query: 718 APPQNVSCEPLSSTSIRISWEPPPVERSN-GHIVYYKLQFVETGRSDSEASIVTLKNQTS 776
PQ +S + + + W P + V Y+ ++ S
Sbjct: 8 PAPQQLSVLSTNMKHL-LMWSPVIAPGETVYYSVEYQGEYESLYTSHIWIPSSWCSLTEG 66
Query: 777 F---VLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDPSEVCPTQNDFRKNKKT- 832
V D++ Y + V A G S++ I + + + K+
Sbjct: 67 PECDVTDDITATVPYNLRVRATL--GSQTSAWSILKHPFNRQSTILTRPGMEITKDGFHL 124
Query: 833 --------NGSNFKGGYL----NDPMRFDVSDGGALELNVTGLQPDTIYTIQVAALTRKG 880
F Y + G + +++ ++P Y ++ +
Sbjct: 125 VIELEDLGPQFEFLVAYWRREPGAEEHVKMVRSGGIPVHLETMEPGAAYCVKAQTFVKAI 184
Query: 881 D--GDRSKPETIKTPG 894
S+ E ++ G
Sbjct: 185 GRYSAFSQTECVEVQG 200
Score = 52.0 bits (124), Expect = 2e-07
Identities = 18/133 (13%), Positives = 41/133 (30%), Gaps = 11/133 (8%)
Query: 447 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPE 506
+ Y + + A A + +Q T P +++ ++ E E
Sbjct: 75 ITATVPYNLRVRATLGSQTSAWSILKHPFNRQSTILTRP-GMEITKDGFHLVI----ELE 129
Query: 507 TPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLT-TISDLTPHTIYTIRVQAFTSV--G 563
Q Y+ ++ + ++V + + + + P Y ++ Q F
Sbjct: 130 DLGPQFEFLVAYWRREPG---AEEHVKMVRSGGIPVHLETMEPGAAYCVKAQTFVKAIGR 186
Query: 564 PGPLSAPVLVKTQ 576
S V+ Q
Sbjct: 187 YSAFSQTECVEVQ 199
Score = 50.8 bits (121), Expect = 3e-07
Identities = 24/168 (14%), Positives = 46/168 (27%), Gaps = 14/168 (8%)
Query: 484 APRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLTTI 543
AP+ + V + ++ W P + Y V Y + ++ LT
Sbjct: 9 APQQLSVLSTNMKH-LLMWSPVIAPGETVY-YSVEYQGEYESLYTSHIWIPSSWCSLTEG 66
Query: 544 ------SDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVT 597
D+T Y +RV+A S +Q + + +
Sbjct: 67 PECDVTDDITATVPYNLRVRATLGSQTSAWSILKHPFNRQSTILTRPGME-ITKDGFHLV 125
Query: 598 LAWSKPTHSGENIISYEL-YWNDTYAKPRDLRAVDIQETAVTLAWSKP 644
+ + + YW ++ V V L +P
Sbjct: 126 IELEDL----GPQFEFLVAYWRREPGAEEHVKMVRSGGIPVHLETMEP 169
Score = 41.6 bits (97), Expect = 4e-04
Identities = 8/95 (8%), Positives = 20/95 (21%), Gaps = 4/95 (4%)
Query: 199 TLPVAPLDVKISEVTATSVRL--DWTYPSETLLYYVIQYKPKAANTPYSEISGIITTYYT 256
L E+T L + + V ++ + + ++
Sbjct: 104 NRQSTILTRPGMEITKDGFHLVIELEDLGPQFEFLVAYWRREPGAEEHVKMVRSGGIPVH 163
Query: 257 VRNLSPYTEYEFYIIAVNNL--GRGPPSSPAVITT 289
+ + P Y S +
Sbjct: 164 LETMEPGAAYCVKAQTFVKAIGRYSAFSQTECVEV 198
Score = 40.8 bits (95), Expect = 8e-04
Identities = 26/203 (12%), Positives = 54/203 (26%), Gaps = 27/203 (13%)
Query: 195 APLLTLPVAPLDVKISEVTATSVRLDWTYPSET--LLYYVIQYKPKAANTPYSEI----- 247
A + + AP + + + L W+ +YY ++Y+ + + S I
Sbjct: 1 ADEVAILPAPQQLSVLSTNMKHL-LMWSPVIAPGETVYYSVEYQGEYESLYTSHIWIPSS 59
Query: 248 --SGIITTYYTV-RNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVR 304
S V +++ Y + A S ++ T P +++
Sbjct: 60 WCSLTEGPECDVTDDITATVPYNLRVRATLGSQTSAWSILKHPFNRQSTILTRP-GMEIT 118
Query: 305 PLSSSTMVIQWDEP-----------ETPNGQITAKHHRRIGLVETYSLTGLYPNTLYYIW 353
++ D P + K R L + P Y +
Sbjct: 119 KDGFHLVIELEDLGPQFEFLVAYWRREPGAEEHVKMVR--SGGIPVHLETMEPGAAYCVK 176
Query: 354 LAAQSPR--GEGATTPPIPVRTK 374
A + V +
Sbjct: 177 AQTFVKAIGRYSAFSQTECVEVQ 199
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 59.0 bits (143), Expect = 1e-10
Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 6/111 (5%)
Query: 104 PPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRN-VLTL 162
PP P V +D LSCVA GSP+P + WRK + T D ++ N VL +
Sbjct: 8 PPVIRQGP-VNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQI 66
Query: 163 DRVTESE--NYTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISE 211
+ YTCIA++ G S ++VQ + P P D +
Sbjct: 67 RYAKLGDTGRYTCIASTPSGEATWSAYIEVQ--EFGVPVQPPRPTDPNLIP 115
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 63.8 bits (155), Expect = 1e-10
Identities = 20/107 (18%), Positives = 41/107 (38%), Gaps = 7/107 (6%)
Query: 92 AVRQVADPVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKG-----QNIE 146
+ +P+ P+ LE+M+ ++L C A G P P +W K +
Sbjct: 199 GRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQA 258
Query: 147 LTPDDKLPVGRNVLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
+ +D++ L + + Y C+ + +G T++ V
Sbjct: 259 VVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVT 305
Score = 60.0 bits (145), Expect = 2e-09
Identities = 24/115 (20%), Positives = 37/115 (32%), Gaps = 11/115 (9%)
Query: 103 VPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRK--GQNIELTPDDKLPVGRNVL 160
P F P ++ + + C A G+PMP + W + G + P + L
Sbjct: 2 KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKL 61
Query: 161 TLDRVTESEN--------YTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDV 207
+ Y C+A + G I S V V+ A V V
Sbjct: 62 VFPPFRAEDYRQEVHAQVYACLARNQFGSI-ISRDVHVRAVVAQYYEADVNKEHV 115
Score = 54.9 bits (132), Expect = 6e-08
Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 12/92 (13%)
Query: 102 RVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRK-GQNIELTPDDKLPVGRNVL 160
P I PP V P +C G+P+ V W K G+ + + +VL
Sbjct: 305 TAPLSAKIDPPTQ-TVDFGRPAVFTCQYTGNPIKTVSWMKDGK--AIGHSE------SVL 355
Query: 161 TLDRVTESE--NYTCIAASVLGVIETSTIVKV 190
++ V + + Y C + E S +K+
Sbjct: 356 RIESVKKEDKGMYQCFVRNDRESAEASAELKL 387
Score = 37.6 bits (87), Expect = 0.018
Identities = 18/92 (19%), Positives = 29/92 (31%), Gaps = 11/92 (11%)
Query: 100 VRRVPPQFSIPPPALLEVMLDSPLNLSCVA---VGSPMPFVKWRKGQNIELTP----DDK 152
VR V Q+ V+ + + C+ V + V W + P D K
Sbjct: 98 VRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGK 157
Query: 153 LPVGRN-VLTLDRVTESE---NYTCIAASVLG 180
V + L + V + +Y C L
Sbjct: 158 YLVLPSGELHIREVGPEDGYKSYQCRTKHRLT 189
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 64.2 bits (156), Expect = 1e-10
Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 3/99 (3%)
Query: 100 VRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRNV 159
V P+ SI V + +C ++ W GQ++ ++P +L G
Sbjct: 462 VSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWVNGQSLPVSPRLQLSNGNRT 521
Query: 160 LTLDRVTESE--NYTCIAASVLGVIETSTIVKVQCKYAP 196
LTL VT ++ Y C + + + V + Y P
Sbjct: 522 LTLFNVTRNDARAYVCGIQNSVSANRSDP-VTLDVLYGP 559
Score = 60.4 bits (146), Expect = 2e-09
Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 3/99 (3%)
Query: 100 VRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRNV 159
V P+ SI V + +C ++ W Q++ ++P +L G
Sbjct: 106 VYPELPKPSISSNNSKPVEDKDAVAFTCEPETQDATYLWWVNNQSLPVSPRLQLSNGNRT 165
Query: 160 LTLDRVTESE--NYTCIAASVLGVIETSTIVKVQCKYAP 196
LTL VT ++ +Y C + + S V + Y P
Sbjct: 166 LTLFNVTRNDTASYKCETQNPVSAR-RSDSVILNVLYGP 203
Score = 59.6 bits (144), Expect = 3e-09
Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 3/99 (3%)
Query: 100 VRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRNV 159
V PP+ I V + + L+C ++ W Q++ ++P +L
Sbjct: 284 VYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDNRT 343
Query: 160 LTLDRVTESE--NYTCIAASVLGVIETSTIVKVQCKYAP 196
LTL VT ++ Y C + L V + V + Y P
Sbjct: 344 LTLLSVTRNDVGPYECGIQNELSVDHSDP-VILNVLYGP 381
Score = 58.8 bits (142), Expect = 5e-09
Identities = 20/114 (17%), Positives = 33/114 (28%), Gaps = 11/114 (9%)
Query: 100 VRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRNV 159
V P +I P L+LSC A +P W D +
Sbjct: 377 VLYGPDDPTISPSYT-YYRPGVNLSLSCHAASNPPAQYSWLI--------DGNIQQHTQE 427
Query: 160 LTLDRVTESE--NYTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISE 211
L + +TE YTC A + +T+ + + + +
Sbjct: 428 LFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVED 481
Score = 54.2 bits (130), Expect = 1e-07
Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 10/92 (10%)
Query: 102 RVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRNVLT 161
P I P + + LNLSC + +P P WR + VL
Sbjct: 556 LYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRI--------NGIPQQHTQVLF 607
Query: 162 LDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
+ ++T + Y C +++ S + +
Sbjct: 608 IAKITPNNNGTYACFVSNLATGRNNSIVKSIT 639
Score = 53.0 bits (127), Expect = 3e-07
Identities = 18/111 (16%), Positives = 32/111 (28%), Gaps = 10/111 (9%)
Query: 103 VPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRNVLTL 162
P P LNLSC A +P W + L +
Sbjct: 201 YGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFV--------NGTFQQSTQELFI 252
Query: 163 DRVTESE--NYTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISE 211
+T + +YTC A + + +T+ + P + + +
Sbjct: 253 PNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVED 303
Score = 33.0 bits (75), Expect = 0.50
Identities = 14/112 (12%), Positives = 30/112 (26%), Gaps = 22/112 (19%)
Query: 106 QFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTP---------------- 149
+ +I V + L + + W KG+ ++
Sbjct: 1 KLTIESTPF-NVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGP 59
Query: 150 --DDKLPVGRN-VLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQCKYAP 196
+ + N L + + +++ YT V E +T P
Sbjct: 60 AYSGREIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELP 111
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 60.9 bits (148), Expect = 1e-10
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 8/94 (8%)
Query: 104 PPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPV----GRNV 159
P + L LSC VG P+P +KW + EL K + +
Sbjct: 7 APGI-RKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRF-GKELIQSRKYKMSSDGRTHT 64
Query: 160 LTLDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
LT+ + + YTCIA + +G +ETS+ + +Q
Sbjct: 65 LTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQ 98
Score = 57.8 bits (140), Expect = 1e-09
Identities = 21/100 (21%), Positives = 36/100 (36%), Gaps = 10/100 (10%)
Query: 103 VPPQFSIPPPAL--LEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPV----G 156
PQF P + S L L + +G P+P + W G L + + +
Sbjct: 99 ATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHG-QKLLQNSENITIENTEH 157
Query: 157 RNVLTLDRVTESE---NYTCIAASVLGVIETSTIVKVQCK 193
L + V Y ++V G ++ V++Q K
Sbjct: 158 YTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQDK 197
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 60.3 bits (146), Expect = 2e-10
Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 4/91 (4%)
Query: 102 RVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPF-VKWRKGQNIELTPDDKLPVGRNVL 160
P F P V ++P NLSC A G P P + W + + L R L
Sbjct: 104 EGLPYFLEEPEDR-TVAANTPFNLSCQAQGPPEPVDLLWLQD-AVPLATAPGHGPQR-SL 160
Query: 161 TLDRVTESENYTCIAASVLGVIETSTIVKVQ 191
+ + ++ +++C A + GV + T
Sbjct: 161 HVPGLNKTSSFSCEAHNAKGVTTSRTATITV 191
Score = 40.7 bits (95), Expect = 8e-04
Identities = 17/104 (16%), Positives = 31/104 (29%), Gaps = 17/104 (16%)
Query: 104 PPQFSIPPPALLEVMLDSPLNLSC-VAVGSPMPFVKWRK-GQNIELTPDDKL-------- 153
F P + L C + V P V W + GQ +EL +
Sbjct: 2 ESPFVGNPGNI-TGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDE 60
Query: 154 ---PVGRNVLTLDRVTESE--NYTCIAASVLGVIETSTI-VKVQ 191
+ + L + + S+ Y C+ + V ++
Sbjct: 61 QDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLE 104
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 57.3 bits (139), Expect = 2e-10
Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 8/95 (8%)
Query: 103 VPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPV----GRN 158
+ P+ + ++ NL +G+P P W G + +L V
Sbjct: 1 LKPKILTASRKI-KIKAGFTHNLEVDFIGAPDPTATWTVG-DSGAALAPELLVDAKSSTT 58
Query: 159 VLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
+ ++ NY + LG E V VQ
Sbjct: 59 SIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 57.8 bits (140), Expect = 2e-10
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 4/91 (4%)
Query: 104 PPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRN-VLTL 162
PP + PA + +D L C A G P+P + W K D + + L +
Sbjct: 8 PPII-LQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQI 66
Query: 163 DRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
+ S+ YTC+A S G S ++ V
Sbjct: 67 KNLRISDTGTYTCVATSSSGETSWSAVLDVT 97
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease
mutation, immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 57.3 bits (139), Expect = 2e-10
Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 7/97 (7%)
Query: 103 VPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRK-GQNIELTPDDKLPV---GRN 158
PP+F P + + + G P P V W G+ ++ K+ V G +
Sbjct: 4 GPPRFIQVPENM-SIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLH 62
Query: 159 VLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQCK 193
L + V S+ Y C+A + G + + V K
Sbjct: 63 SLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAK 99
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 63.2 bits (153), Expect = 2e-10
Identities = 8/94 (8%), Positives = 19/94 (20%), Gaps = 4/94 (4%)
Query: 103 VPPQFSIPP-PALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRNVLT 161
+ E+ S P W + K ++
Sbjct: 323 EKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFS-RKSFPCEQKGLDNGYSIS 381
Query: 162 LDRVTESE--NYTCIAASVLGVIETSTIVKVQCK 193
+ + Y A + + ++ K
Sbjct: 382 KFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRK 415
Score = 56.2 bits (135), Expect = 3e-08
Identities = 26/208 (12%), Positives = 61/208 (29%), Gaps = 15/208 (7%)
Query: 102 RVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRK-GQNIELTPDDKL-PVGRNV 159
R ++ A +EV + + + L + W ++ P L G
Sbjct: 45 RPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVS 104
Query: 160 LTLDRVTESE--NYTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISEVTATSV 217
+ + ++TE++ Y S + + V + L TL ++ +
Sbjct: 105 MVILKMTETQAGEYLLFIQSEAT--NYTILFTVSIRNTLLYTLRRPYFRKMENQDALVCI 162
Query: 218 RLDWTYPSETLLYYVIQYKPKAANTPYSEISGIITTYYTVRNLSPYTEYEFYIIAVNNLG 277
+ P + + + + ++ + + L + A N LG
Sbjct: 163 SE--SVPEPIVEWVLCDSQGESCKEESPAVVKKEE-----KVLHELFGTDIRCCARNELG 215
Query: 278 RGPPSSPAVITTGETEPGTAPRDVQVRP 305
R + P T + ++
Sbjct: 216 RE--CTRLFTIDLNQTPQTTLPQLFLKV 241
Score = 48.9 bits (116), Expect = 5e-06
Identities = 17/106 (16%), Positives = 31/106 (29%), Gaps = 25/106 (23%)
Query: 102 RVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRN--- 158
R PQ + S SC + G P+P W+K + +++ G
Sbjct: 413 RRKPQV---------LAEASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRK 463
Query: 159 -------------VLTLDRVTESENYTCIAASVLGVIETSTIVKVQ 191
L + + C A + LG + ++
Sbjct: 464 ANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNSP 509
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 60.4 bits (146), Expect = 2e-10
Identities = 22/115 (19%), Positives = 38/115 (33%), Gaps = 13/115 (11%)
Query: 110 PPPALLEVMLDSPLNLSCVAVGSPMPFVKWRK-----------GQNIELTPDDKLPVGRN 158
+ + ++P+ LSC G P V+W+ I + +D++
Sbjct: 9 SSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPT 68
Query: 159 VLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISE 211
+T VT + YTC+ + G VK+ P P I
Sbjct: 69 GITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGN 123
Score = 53.4 bits (128), Expect = 4e-08
Identities = 22/102 (21%), Positives = 35/102 (34%), Gaps = 14/102 (13%)
Query: 103 VPPQFSIPPPALLEVMLDSPLNLSCVAV-GSPMPFVKWRK-GQNIELTPDDKLPVGRN-- 158
VPP + + L+C GSP W K G + P +
Sbjct: 106 VPPSKPTVNI-PSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSY 164
Query: 159 -------VLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
L D ++ S+ Y+C A + G TS V+++
Sbjct: 165 VLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRME 206
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 59.8 bits (145), Expect = 3e-10
Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 5/93 (5%)
Query: 103 VPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRK-GQNIELTPDDKLPV-GRNVL 160
F P E + C V S P + W+ G+++ L D + V N L
Sbjct: 99 QKLMFKNAP-TPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYL 157
Query: 161 TLDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
+ + +++ Y C + ++V
Sbjct: 158 QIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 190
Score = 56.0 bits (135), Expect = 5e-09
Identities = 20/117 (17%), Positives = 35/117 (29%), Gaps = 11/117 (9%)
Query: 104 PPQFSIPPPALLEVMLDSPLNLSCVAVGSPM-PFVKWRKGQNIELTPDD------KLPVG 156
Q I P E+ + C G + W +L+P+
Sbjct: 2 VLQVDIVPSQG-EISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60
Query: 157 RNVLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISE 211
+ LT+ + Y C+ + G +T V V+ + P + K E
Sbjct: 61 SSTLTIYNANIDDAGIYKCVVTAEDGTQSEAT-VNVKIFQKLMFKNAPTPQEFKEGE 116
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 59.4 bits (144), Expect = 3e-10
Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 13/107 (12%)
Query: 90 AHAVRQVADPVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTP 149
+ QV + P+ + PP + +++ L C +G+P P V W KG + L
Sbjct: 91 SCGALQVK-----MKPKITRPPINV-KIIEGLKAVLPCTTMGNPKPSVSWIKG-DSALRE 143
Query: 150 DDKLPV-GRNVLTLDRVTESE--NYTCIAASVLGVIETSTI---VKV 190
+ ++ V L + V + + Y C+A + LG + + V+V
Sbjct: 144 NSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEV 190
Score = 58.6 bits (142), Expect = 6e-10
Identities = 26/112 (23%), Positives = 44/112 (39%), Gaps = 8/112 (7%)
Query: 104 PPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRK-GQNIELTPDD-KLPVGRNVLT 161
P P ++ +++ C P P + W + I+L + +LT
Sbjct: 7 APVI-TTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLT 65
Query: 162 LDRVTESE--NYTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISE 211
+ V +S+ Y C A + +G S K P +T P P++VKI E
Sbjct: 66 ILSVEDSDDGIYCCTANNGVGGAVESCGALQV-KMKPKITRP--PINVKIIE 114
>2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin
type-III, beta-N-acetylglucosaminidase, cohesin,
hydrolase; 1.80A {Clostridium perfringens}
Length = 238
Score = 60.3 bits (145), Expect = 4e-10
Identities = 30/177 (16%), Positives = 56/177 (31%), Gaps = 15/177 (8%)
Query: 408 TLYYIWLAAQSPRGEGATTPPIPVRTKQYGKTPGFGEQALYPNTLYYIWLAAQ------- 460
+ + R ++ P+ K+ +A + + ++
Sbjct: 70 FVNAKKIEDGKVRVLVSSLTGEPLPAKEVLAKVVLRAEAKTEGSNLSVTNSSVGDGEGLV 129
Query: 461 SPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYT 520
T I T RD + ++ + + W EPET G + GY +Y
Sbjct: 130 HEIAGTEKTVNIIEGTSPEIVVNPVRDFKASEINKKNVTVTWTEPETTEG-LEGYILYKD 188
Query: 521 QDQSLPMSAWETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQ 577
+ + ET T L HTIY ++ A S G + ++T +
Sbjct: 189 GKKVAEIGKDETSY-------TFKKLNRHTIYNFKIAAKYSNGEVSSKESLTLRTAR 238
Score = 59.6 bits (143), Expect = 7e-10
Identities = 31/137 (22%), Positives = 47/137 (34%), Gaps = 9/137 (6%)
Query: 159 VLTLDRVTESENYTCIAASVLGVIETSTIVKVQCKY------APLLTLPVAPLDVKISEV 212
VL + TE N + +SV + K + D K SE+
Sbjct: 103 VLRAEAKTEGSNLSVTNSSVGDGEGLVHEIAGTEKTVNIIEGTSPEIVVNPVRDFKASEI 162
Query: 213 TATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEISGIITTYYTVRNLSPYTEYEFYIIA 272
+V + WT P T + Y +EI T+Y T + L+ +T Y F I A
Sbjct: 163 NKKNVTVTWTEPETT--EGLEGYILYKDGKKVAEIGKDETSY-TFKKLNRHTIYNFKIAA 219
Query: 273 VNNLGRGPPSSPAVITT 289
+ G + T
Sbjct: 220 KYSNGEVSSKESLTLRT 236
Score = 56.5 bits (135), Expect = 7e-09
Identities = 30/224 (13%), Positives = 70/224 (31%), Gaps = 46/224 (20%)
Query: 490 VRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLTTISDLTPH 549
V +S + + + E ++ + + + A + + +T
Sbjct: 61 VEAISDDGVFVNAKKIEDGKVRVLVSSLTGEPLPAKEVLAKVVLRAEAKTEGSNLSVTNS 120
Query: 550 TIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLAWSKPTHSGEN 609
++ G + + + V + RD +A +I + VT+ W++P +
Sbjct: 121 SVGDGEGLVHEIAGTEKTVNIIEGTSPEIVVNPVRDFKASEINKKNVTVTWTEPETTE-G 179
Query: 610 IISYELYWNDTYAKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHR 669
+ Y LY + + + ET
Sbjct: 180 LEGYILYKDGKK-----VAEIGKDET---------------------------------- 200
Query: 670 RIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQ 713
+Y+ L +T+Y +AA+ GE ++ + +RT +
Sbjct: 201 ------SYTFKKLNRHTIYNFKIAAKYSNGEVSSKESLTLRTAR 238
Score = 50.7 bits (120), Expect = 6e-07
Identities = 29/177 (16%), Positives = 57/177 (32%), Gaps = 11/177 (6%)
Query: 637 VTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVETYSLTGLYPNTLYYI--WLAA 694
V + K ++ L AK + + E + T +
Sbjct: 69 VFVNAKKIEDGKVRVLVSSLTGEPLPAKEVLAKVVLRAEAKTEGSNLSVTNSSVGDGEGL 128
Query: 695 QSPRGEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKL 754
T I T + P ++ ++ ++ ++W P + + Y L
Sbjct: 129 VHEIAGTEKTVNIIEGTSPEIVVNPVRDFKASEINKKNVTVTWTEP---ETTEGLEGYIL 185
Query: 755 QFVETGRSDSEASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRT 811
D + K++TS+ +L + T Y + A S G+ S +T+RT
Sbjct: 186 Y------KDGKKVAEIGKDETSYTFKKLNRHTIYNFKIAAKYSNGEVSSKESLTLRT 236
Score = 49.9 bits (118), Expect = 1e-06
Identities = 22/148 (14%), Positives = 46/148 (31%), Gaps = 14/148 (9%)
Query: 242 TPYSEISGIITTYYTVRNLSPYTEYEFYIIAVN-------NLGRGPPSSPAVITTGETEP 294
P + + + +V + + + T
Sbjct: 91 EPLPAKEVLAKVVLRAEAKTEGSNLSVTNSSVGDGEGLVHEIAGTEKTVNIIEGTSPEIV 150
Query: 295 GTAPRDVQVRPLSSSTMVIQWDEPETPNGQITAKHHRRIGLVET-------YSLTGLYPN 347
RD + ++ + + W EPET G ++ V Y+ L +
Sbjct: 151 VNPVRDFKASEINKKNVTVTWTEPETTEGLEGYILYKDGKKVAEIGKDETSYTFKKLNRH 210
Query: 348 TLYYIWLAAQSPRGEGATTPPIPVRTKQ 375
T+Y +AA+ GE ++ + +RT +
Sbjct: 211 TIYNFKIAAKYSNGEVSSKESLTLRTAR 238
Score = 36.1 bits (82), Expect = 0.032
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 859 NVTGLQPDTIYTIQVAALTRKGDGDRSKPETIKT 892
L TIY ++AA G+ + T++T
Sbjct: 203 TFKKLNRHTIYNFKIAAKYSNGEVSSKESLTLRT 236
Score = 36.1 bits (82), Expect = 0.033
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 398 TYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQ 435
+Y+ L +T+Y +AA+ GE ++ + +RT +
Sbjct: 201 SYTFKKLNRHTIYNFKIAAKYSNGEVSSKESLTLRTAR 238
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 56.5 bits (137), Expect = 4e-10
Identities = 20/96 (20%), Positives = 32/96 (33%), Gaps = 7/96 (7%)
Query: 104 PPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRK-GQNIELTPDDKL---PVGRNV 159
P+ + V S + VG P P +W K G IE +
Sbjct: 5 APKIFERIQSQ-TVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE 63
Query: 160 LTLDRVTESE--NYTCIAASVLGVIETSTIVKVQCK 193
L + VT + + A ++ G + + VQ K
Sbjct: 64 LVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 99
>1iar_B Protein (interleukin-4 receptor alpha chain); cytokine
receptor,interleukin-4, cytokine/receptor complex; 2.30A
{Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_B*
3bpn_B* 3bpo_B*
Length = 207
Score = 59.3 bits (143), Expect = 4e-10
Identities = 28/190 (14%), Positives = 52/190 (27%), Gaps = 17/190 (8%)
Query: 641 WSKPTHSGENIISYELYWNDTYAKAKH------HRRIGLVETYSLTGLYPNTLYYIWLAA 694
W + + LY H + G V + + Y + L A
Sbjct: 21 WKMNGPTNCSTELRLLYQLVFLLSEAHTCIPENNGGAGCVCHLLMDDVVSADNYTLDLWA 80
Query: 695 QSPRGEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPP-PVERSNGHIVYYK 753
+ ++V P N++ S ++ ++W P P + + + Y
Sbjct: 81 GQQLLW-----KGSFKPSEHVKPRAPGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYA 135
Query: 754 LQFVETGRSD--SEASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDGP-S--SYPIT 808
+ ++ L+ LK YR V A + S S
Sbjct: 136 VNIWSENDPADFRIYNVTYLEPSLRIAASTLKSGISYRARVRAWAQAYNTTWSEWSPSTK 195
Query: 809 IRTHEDDPSE 818
+P E
Sbjct: 196 WHNSYREPFE 205
Score = 56.6 bits (136), Expect = 5e-09
Identities = 28/189 (14%), Positives = 50/189 (26%), Gaps = 18/189 (9%)
Query: 400 SLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYGKTPGFGEQALYPNTLYYIWLAA 459
T L IP G + Y + L A
Sbjct: 25 GPTNCSTELRLLYQLVFLLSE----AHTCIPENNGGAGCVCHLLMDDVVSADNYTLDLWA 80
Query: 460 QSPRGEGAT-TPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITG---Y 515
+ P V+ + AP ++ V S T+++ W P P+ + Y
Sbjct: 81 GQQLLWKGSFKPSEHVKPR------APGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTY 134
Query: 516 KV-YYTQDQSLPMSAWETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVGPGPLSA---PV 571
V ++++ + ++ + S L Y RV+A+ S
Sbjct: 135 AVNIWSENDPADFRIYNVTYLEPSLRIAASTLKSGISYRARVRAWAQAYNTTWSEWSPST 194
Query: 572 LVKTQQGVP 580
P
Sbjct: 195 KWHNSYREP 203
Score = 47.0 bits (111), Expect = 7e-06
Identities = 16/109 (14%), Positives = 29/109 (26%), Gaps = 13/109 (11%)
Query: 201 PVAPLDVKISEVTATSVRLDWTYPSE------TLLYYVIQYKPK---AANTPYSEISGII 251
P AP ++ + + ++ L W+ P L Y + + A Y+
Sbjct: 98 PRAPGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLEP 157
Query: 252 TTYYTVRNLSPYTEYEFYIIAVNNLGRGPPS--SPAVITTGETEPGTAP 298
+ L Y + A S SP+
Sbjct: 158 SLRIAASTLKSGISYRARVRAWAQAYNTTWSEWSPST--KWHNSYREPF 204
Score = 38.5 bits (89), Expect = 0.004
Identities = 18/140 (12%), Positives = 39/140 (27%), Gaps = 24/140 (17%)
Query: 243 PYSEISGIITTYYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQ 302
P + + + ++ Y + A L P + +P AP ++
Sbjct: 51 PENNGGAGCVCHLLMDDVVSADNYTLDLWAGQQLLWKGSFKP----SEHVKPR-APGNLT 105
Query: 303 VRPLSSSTMVIQWDEPETPNGQIT-----------------AKHHRRIGLVETYSLTG-- 343
V S T+++ W P P+ + + + L + +
Sbjct: 106 VHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLEPSLRIAAST 165
Query: 344 LYPNTLYYIWLAAQSPRGEG 363
L Y + A +
Sbjct: 166 LKSGISYRARVRAWAQAYNT 185
Score = 33.5 bits (76), Expect = 0.20
Identities = 27/155 (17%), Positives = 50/155 (32%), Gaps = 19/155 (12%)
Query: 496 STMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLT------TISDLTPH 549
S +W N ++ Y +S T + +NN + D+
Sbjct: 15 SISTCEWKMNGPTNCSTE-LRLLYQLVFL--LSEAHTCIPENNGGAGCVCHLLMDDVVSA 71
Query: 550 TIYTIRVQAFTSVGPGPLSAPVLVKTQQGV-PSQPRDLRAVDIQETAVTLAWSKP---TH 605
YT+ + A L K + V P P +L + L WS P +
Sbjct: 72 DNYTLDLWA-----GQQLLWKGSFKPSEHVKPRAPGNLTVHTNVSDTLLLTWSNPYPPDN 126
Query: 606 SGENIISYEL-YWNDTYAKPRDLRAVDIQETAVTL 639
N ++Y + W++ + V E ++ +
Sbjct: 127 YLYNHLTYAVNIWSENDPADFRIYNVTYLEPSLRI 161
Score = 31.2 bits (70), Expect = 1.1
Identities = 14/85 (16%), Positives = 28/85 (32%), Gaps = 7/85 (8%)
Query: 624 PRDLRAVDIQETAVTLAWSKP---THSGENIISYEL-YWN-DTYAKAKHHRRIGLVETYS 678
P +L + L WS P + N ++Y + W+ + A + + L +
Sbjct: 101 PGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLEPSLR 160
Query: 679 LTG--LYPNTLYYIWLAAQSPRGEG 701
+ L Y + A +
Sbjct: 161 IAASTLKSGISYRARVRAWAQAYNT 185
Score = 28.5 bits (63), Expect = 8.2
Identities = 7/45 (15%), Positives = 14/45 (31%), Gaps = 3/45 (6%)
Query: 856 LELNVTGLQPDTIYTIQVAALTRKGDG---DRSKPETIKTPGGVP 897
L + + L+ Y +V A + + + S P
Sbjct: 159 LRIAASTLKSGISYRARVRAWAQAYNTTWSEWSPSTKWHNSYREP 203
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 62.1 bits (150), Expect = 5e-10
Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 6/94 (6%)
Query: 102 RVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDK--LPVGRNV 159
RV P + + + +SC A G+P P + W K N L D L G
Sbjct: 664 RVAPTITGNLENQ-TTSIGESIEVSCTASGNPPPQIMWFKD-NETLVEDSGIVLKDGNRN 721
Query: 160 LTLDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
LT+ RV + + YTC A SVLG + ++
Sbjct: 722 LTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIE 755
Score = 59.0 bits (142), Expect = 6e-09
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 6/98 (6%)
Query: 103 VPPQFSIPP--PALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRNVL 160
P + +L+E + + + +G P P +KW K I L + + G +VL
Sbjct: 326 EKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKN-GIPLESNHTIKAG-HVL 383
Query: 161 TLDRVTESE--NYTCIAASVLGVIETSTIVKVQCKYAP 196
T+ V+E + NYT I + + + S +V + P
Sbjct: 384 TIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPP 421
Score = 53.2 bits (127), Expect = 3e-07
Identities = 22/103 (21%), Positives = 41/103 (39%), Gaps = 15/103 (14%)
Query: 104 PPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRK-------------GQNIELTPD 150
+ P +E+ + L L+C A + + ++++
Sbjct: 223 IYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSG 282
Query: 151 DKLPVGRNVLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
++ + LT+D VT S+ YTC A+S L + ST V+V
Sbjct: 283 SEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVH 325
Score = 51.7 bits (123), Expect = 1e-06
Identities = 19/136 (13%), Positives = 38/136 (27%), Gaps = 29/136 (21%)
Query: 103 VPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPV------- 155
P+ ++ P ++ ++L C A S + W K L
Sbjct: 549 RGPEITLQPD--MQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNL 606
Query: 156 ----------------GRNVLTLDRVTESE--NYTCIAASVLGVIETSTI--VKVQCKYA 195
++ L + + +Y C+A + + V + A
Sbjct: 607 DTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVA 666
Query: 196 PLLTLPVAPLDVKISE 211
P +T + I E
Sbjct: 667 PTITGNLENQTTSIGE 682
Score = 49.0 bits (116), Expect = 7e-06
Identities = 13/123 (10%), Positives = 31/123 (25%), Gaps = 6/123 (4%)
Query: 93 VRQVADPVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDK 152
V+ P + + + + + C+ S + + PD
Sbjct: 118 VQDYRSP--FIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGN 175
Query: 153 --LPVGRNVLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVK 208
+ T+ S C A ++ + V Y + ++
Sbjct: 176 RISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIE 235
Query: 209 ISE 211
+S
Sbjct: 236 LSV 238
Score = 44.4 bits (104), Expect = 2e-04
Identities = 29/212 (13%), Positives = 60/212 (28%), Gaps = 14/212 (6%)
Query: 104 PPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRN----V 159
P+ SI L + ++ L ++C G W Q+ +
Sbjct: 31 LPRLSIQKDIL-TIKANTTLQITCR--GQRDLDWLWPNNQSGSEQRVEVTECSDGLFCKT 87
Query: 160 LTLDRVTESEN--YTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISEVTATSV 217
LT+ +V ++ Y C V+ + + ++ V I+E +V
Sbjct: 88 LTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDY-RSPFIASVSDQHGVVYITENKNKTV 146
Query: 218 RLDWTYPSETLLYYVIQYKPKAANTPYS-EISGIITTYYTVRNLSPYTEYEFYIIAVNNL 276
+ L + P+ P IS +T+ + + A N
Sbjct: 147 VIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKIND 206
Query: 277 GRGPPSSPAVITTGETEP---GTAPRDVQVRP 305
V+ G + +++
Sbjct: 207 ESYQSIMYIVVVVGYRIYDVVLSPSHGIELSV 238
Score = 37.0 bits (85), Expect = 0.031
Identities = 20/131 (15%), Positives = 28/131 (21%), Gaps = 41/131 (31%)
Query: 102 RVPPQFSIPP--PALLEVMLDSPLNLSCVAVGSPMPF-VKWRKGQNIELTPDDKLPVGRN 158
VPPQ + + L+C P P + W E + V
Sbjct: 418 YVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVT 477
Query: 159 ------------------------------------VLTLDRVTESE--NYTCIAASVLG 180
V TL + Y C A + +G
Sbjct: 478 NPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVG 537
Query: 181 VIETSTIVKVQ 191
E V
Sbjct: 538 RGERVISFHVT 548
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 56.2 bits (136), Expect = 5e-10
Identities = 14/94 (14%), Positives = 25/94 (26%), Gaps = 8/94 (8%)
Query: 104 PPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPV----GRNV 159
P+ ++ + V P VKW +EL K+ G
Sbjct: 8 APRITLRMRSH-RVPCGQNTRFILNVQSKPTAEVKWYHN-GVELQESSKIHYTNTSGVLT 65
Query: 160 LTLDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
L + + Y + + G + V
Sbjct: 66 LEILDCHTDDSGTYRAVCTNYKGEASDYATLDVT 99
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 60.4 bits (146), Expect = 7e-10
Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 9/101 (8%)
Query: 99 PVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRN 158
V PP ++ P A L + + C A + F + + N +L + N
Sbjct: 181 KVIPGPPALTLVP-AELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNN 239
Query: 159 V------LTLDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
L LD+V NY+C+A++V G TS +V
Sbjct: 240 RYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVV 280
Score = 51.5 bits (123), Expect = 5e-07
Identities = 23/137 (16%), Positives = 39/137 (28%), Gaps = 14/137 (10%)
Query: 102 RVPPQFSIPPPALLEVMLDSPLNLSCVAVG-SPMPFVKWRKGQNIELTPDDKLPV-GRNV 159
+ P + + V D L C+ V + + L +
Sbjct: 86 KDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHG 145
Query: 160 LTLDRVTESE--NYTCIAASVLGVIETSTI---VKVQCKYAPLLTLPVAPLDVKISE--- 211
T+ R + +Y C A + + +I V+ P LTL A L E
Sbjct: 146 FTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQ 205
Query: 212 ----VTATSVRLDWTYP 224
++ V D
Sbjct: 206 IVCSASSVDVNFDVFLQ 222
Score = 49.2 bits (117), Expect = 3e-06
Identities = 21/112 (18%), Positives = 34/112 (30%), Gaps = 12/112 (10%)
Query: 102 RVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRNVLT 161
P P L+ V + + L CV GS V+W + T +L+
Sbjct: 2 GSIPVIEPSVPELV-VKPGATVTLRCVGNGS----VEWDGPPSPHWTLYSDGSSS--ILS 54
Query: 162 LDRVTESE--NYTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISE 211
+ T Y C + + V+ P V +V + E
Sbjct: 55 TNNATFQNTGTYRCTEPGDPLGGSAAIHLYVK---DPARPWNVLAQEVVVFE 103
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 58.8 bits (142), Expect = 8e-10
Identities = 21/120 (17%), Positives = 37/120 (30%), Gaps = 14/120 (11%)
Query: 105 PQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQ-----------NIELTPDDKL 153
+ +V + + L+C G P V+W+ Q I D++
Sbjct: 2 GSVYTAQSDV-QVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRV 60
Query: 154 PVGRNVLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISE 211
+ +T VT + YTC+ + G + + P P V I
Sbjct: 61 TFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGN 120
Score = 53.0 bits (127), Expect = 8e-08
Identities = 23/103 (22%), Positives = 31/103 (30%), Gaps = 15/103 (14%)
Query: 103 VPPQFSIPPPALLEVMLDSPLNLSCVAV-GSPMPFVKWRK-GQNIELTPDDKLPVGRNV- 159
VPP V + + L+C GSP W K G ++ K N
Sbjct: 103 VPPSK-PTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSS 161
Query: 160 ---------LTLDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
L D VT + Y C A + G S +
Sbjct: 162 FTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMD 204
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 57.9 bits (140), Expect = 1e-09
Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 14/102 (13%)
Query: 102 RVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGR---- 157
+ P + + + C +VG P P WRK +N + + GR
Sbjct: 90 KAAPDITGHKRSE-NKNEGQDAMMYCKSVGYPHPEWMWRKKEN-GVFEEISNSSGRFFII 147
Query: 158 -----NVLTLDRVTESE---NYTCIAASVLGVIETSTIVKVQ 191
L + + +E Y C A + +G ST+++V+
Sbjct: 148 NKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR 189
Score = 57.2 bits (138), Expect = 2e-09
Identities = 19/114 (16%), Positives = 39/114 (34%), Gaps = 12/114 (10%)
Query: 102 RVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFV--KWRKGQNIELTPDDKLPVGRNV 159
+ P+ + ++ P+ L C S + W K +ELT K
Sbjct: 1 QNEPRI-VTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKN-GVELTATRK-NASNME 57
Query: 160 LTLDRVTESE--NYTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISE 211
+++ + Y C+ V + + ++V+ AP +T +E
Sbjct: 58 YRINKPRAEDSGEYHCVYHFV-SAPKANATIEVK--AAPDIT--GHKRSENKNE 106
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 59.6 bits (144), Expect = 1e-09
Identities = 21/114 (18%), Positives = 41/114 (35%), Gaps = 9/114 (7%)
Query: 86 RGRLAHAVRQVADPVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNI 145
R + + + V PPQ + P L + + C A + + F K +
Sbjct: 168 RESTSTGIWLKVNRVHPEPPQIKLEPSKL-VRIRGEAAQIVCSATNAEVGFNVILKRGDT 226
Query: 146 ELTPDDKLPVGRNV------LTLDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
+L N L+L+ V + Y+C+A++ +G + +V
Sbjct: 227 KLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVV 280
Score = 50.3 bits (120), Expect = 1e-06
Identities = 14/114 (12%), Positives = 27/114 (23%), Gaps = 7/114 (6%)
Query: 102 RVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPM-PFVKWRK-GQNIELTPDDKLPVGRNV 159
+ P + V+ L C+ + V + G L
Sbjct: 86 KDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRG 145
Query: 160 LTLDRVTESE--NYTCIAASVLGVIETSTI---VKVQCKYAPLLTLPVAPLDVK 208
+ + + Y C ++ I V P + L + L
Sbjct: 146 FIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRI 199
Score = 49.2 bits (117), Expect = 2e-06
Identities = 25/111 (22%), Positives = 37/111 (33%), Gaps = 12/111 (10%)
Query: 104 PPQFSI-PPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRNVLTL 162
P I P L V + L CV+ GS V+W + T D + P LT
Sbjct: 2 DPAPVIEPSGPELVVEPGETVTLRCVSNGS----VEWDGPISPYWTLDPESPGS--TLTT 55
Query: 163 DRVTESE--NYTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISE 211
T Y C T+ + V+ P + + +V + E
Sbjct: 56 RNATFKNTGTYRCTELEDPMAGSTTIHLYVK---DPAHSWNLLAQEVTVVE 103
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 57.7 bits (139), Expect = 1e-09
Identities = 14/94 (14%), Positives = 30/94 (31%), Gaps = 11/94 (11%)
Query: 100 VRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRNV 159
V+ + + ++ L L+ + P V+ R P K G
Sbjct: 94 VQLLVFGLTANSDT--HLLQGQSLTLTLESPPGSSPSVQCRS-------PRGKNIQGGKT 144
Query: 160 LTLDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
L++ ++ + +TC +E + V
Sbjct: 145 LSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVL 178
Score = 29.9 bits (67), Expect = 2.6
Identities = 9/85 (10%), Positives = 19/85 (22%), Gaps = 22/85 (25%)
Query: 125 LSCVAVGSPMPFVKWRKGQNIELTPDDK--------------------LPVGRNVLTLDR 164
L+C A W+ I++ + G L +
Sbjct: 15 LTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKN 74
Query: 165 VTES--ENYTCIAASVLGVIETSTI 187
+ + Y C ++
Sbjct: 75 LKIEDSDTYICEVEDQKEEVQLLVF 99
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 55.0 bits (133), Expect = 1e-09
Identities = 21/99 (21%), Positives = 34/99 (34%), Gaps = 9/99 (9%)
Query: 99 PVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPV--- 155
P+ P V DS + A G P P W K +T K +
Sbjct: 2 PIS-SKPVIVTGLQDT-TVSSDSVAKFAVKATGEPRPTAIWTKD-GKAITQGGKYKLSED 58
Query: 156 -GRNVLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
G L + + S+ YTC + G + +S + ++
Sbjct: 59 KGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIK 97
>3g9v_A Interleukin 22 receptor, alpha 2; cytokine, cytokine receptor,
receptor, glycoprotein, polymorphism, secreted,
cytokine/cytokine receptor complex; 2.76A {Homo sapiens}
Length = 211
Score = 57.9 bits (139), Expect = 1e-09
Identities = 23/205 (11%), Positives = 47/205 (22%), Gaps = 18/205 (8%)
Query: 622 AKPRDLRAVDIQETAVTLAWSKPTHSGENIISYEL----YWNDTYAKAKHHRRI-GLVET 676
KP+ ++ + L W N Y + Y + + L
Sbjct: 9 LKPQRVQ-FQSRNFHNILQWQPGRALTGNSSVYFVQYKIYGQRQWKNKEDCWGTQELSCD 67
Query: 677 YSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRIS 736
+ YY + A S + PP + S + +
Sbjct: 68 LTSETSDIQEPYYGRVRAASAGSYSEWSMTPRFTPWWETKIDPPVMNITQVNGSLLVILH 127
Query: 737 WEPPPVERSNGHIV--------YYKLQFVETGRSDSEASIVTLKNQTSFVLDELKKWTEY 788
P V Y++ + + + ++ L + Y
Sbjct: 128 APNLPYRYQKEKNVSIEDYYELLYRVFIINNSLEKEQKVYEG--AHRAVEIEALTPHSSY 185
Query: 789 RIWVLAGTSIGDGPS--SYPITIRT 811
+ + D S S +
Sbjct: 186 CVVAEIYQPMLDRRSQRSEERCVEI 210
Score = 52.1 bits (124), Expect = 1e-07
Identities = 29/235 (12%), Positives = 58/235 (24%), Gaps = 41/235 (17%)
Query: 484 APRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLTTI 543
P+ VQ + + ++QW G + Y V Y + W+ +
Sbjct: 10 KPQRVQFQSRNFHN-ILQWQPGRALTGNSSVYFVQY---KIYGQRQWKNKEDCWGTQELS 65
Query: 544 SDLT-----PHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTL 598
DLT Y RV+A ++ S P + + ++ +
Sbjct: 66 CDLTSETSDIQEPYYGRVRAASAGSYSEWSMTPRFTPWWETKIDPPVMN-ITQVNGSLLV 124
Query: 599 AWSKPTHSGENIISYELYWNDTYAKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYW 658
P + D Y + Y ++
Sbjct: 125 ILHAPNLPYRYQKEKNVSIEDYYE-----------------------------LLYRVFI 155
Query: 659 NDTYAKAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPR--GEGATTPPIPVRT 711
+ + + G + L P++ Y + P + V
Sbjct: 156 INNSLEKEQKVYEGAHRAVEIEALTPHSSYCVVAEIYQPMLDRRSQRSEERCVEI 210
Score = 49.0 bits (116), Expect = 1e-06
Identities = 19/148 (12%), Positives = 39/148 (26%), Gaps = 19/148 (12%)
Query: 442 FGEQALYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQ 501
+ YY + A S + P + + ++ S +V
Sbjct: 68 LTSETSDIQEPYYGRVRAASAGSYSEWSMTPRFTPWWETKIDPP-VMNITQVNGSLLV-I 125
Query: 502 WDEPETPNGQITG------------YKVYYTQDQSLPMSAWETQVVDNNQLTTISDLTPH 549
P P Y+V+ + + ++ I LTPH
Sbjct: 126 LHAPNLPYRYQKEKNVSIEDYYELLYRVFIINNSL---EKEQKVYEGAHRAVEIEALTPH 182
Query: 550 TIYTIRVQAFTSV--GPGPLSAPVLVKT 575
+ Y + + + + S V+
Sbjct: 183 SSYCVVAEIYQPMLDRRSQRSEERCVEI 210
Score = 47.1 bits (111), Expect = 7e-06
Identities = 29/206 (14%), Positives = 59/206 (28%), Gaps = 33/206 (16%)
Query: 718 APPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSD---SEASIVTLKNQ 774
PQ V + + +I + W+P G+ Y +Q+ G+ E T +
Sbjct: 9 LKPQRVQFQSRNFHNI-LQWQPGRA--LTGNSSVYFVQYKIYGQRQWKNKEDCWGTQELS 65
Query: 775 TSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHED---DPSEVCPTQNDF----- 826
+ Y V A ++ S + DP + TQ +
Sbjct: 66 CDLTSETSDIQEPYYGRVRAASAGSYSEWSMTPRFTPWWETKIDPPVMNITQVNGSLLVI 125
Query: 827 -----------RKNKKTNGSNFKGGYL------NDPMRFDVSDGGALELNVTGLQPDTIY 869
++ + ++ Y + V +G + + L P + Y
Sbjct: 126 LHAPNLPYRYQKEKNVSIEDYYELLYRVFIINNSLEKEQKVYEGAHRAVEIEALTPHSSY 185
Query: 870 TIQVAALT--RKGDGDRSKPETIKTP 893
+ RS+ ++ P
Sbjct: 186 CVVAEIYQPMLDRRSQRSEERCVEIP 211
Score = 42.1 bits (98), Expect = 3e-04
Identities = 29/243 (11%), Positives = 55/243 (22%), Gaps = 50/243 (20%)
Query: 201 PVAPLDVKISEVTATSVRLDWTYPSE---TLLYYVIQYKPKAAN--TPYSEISGIITTYY 255
+ P V+ ++ L W Y +QYK + G
Sbjct: 8 SLKPQRVQFQSRNFHNI-LQWQPGRALTGNSSVYFVQYKIYGQRQWKNKEDCWGTQELSC 66
Query: 256 --TVRNLSPYTEYEFYIIAVNNLGRGP-PSSPAVITTGETEPGTAPRDVQVRPLSSSTMV 312
T Y + A + +P ET+ P + + ++ S +V
Sbjct: 67 DLTSETSDIQEPYYGRVRAASAGSYSEWSMTPRFTPWWETKID--PPVMNITQVNGSLLV 124
Query: 313 IQWDEPETPNGQITAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVR 372
P P K + + + Y L Y +++
Sbjct: 125 -ILHAPNLPYRYQKEK---NVSIEDYYELL-------YRVFI-----INNSLEKEQKVYE 168
Query: 373 TKQYGKTPGFGEQAAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPR--GEGATTPPIP 430
+ L P++ Y + P +
Sbjct: 169 GAH---------------------RAVEIEALTPHSSYCVVAEIYQPMLDRRSQRSEERC 207
Query: 431 VRT 433
V
Sbjct: 208 VEI 210
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 60.1 bits (145), Expect = 1e-09
Identities = 7/96 (7%), Positives = 19/96 (19%), Gaps = 3/96 (3%)
Query: 100 VRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRNV 159
+ + E+ S P W + K
Sbjct: 321 IVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFS-RKSFPCEQKGLDNGYS 379
Query: 160 LTLDRVTESE--NYTCIAASVLGVIETSTIVKVQCK 193
++ + + Y A + + ++
Sbjct: 380 ISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSG 415
Score = 57.4 bits (138), Expect = 1e-08
Identities = 31/219 (14%), Positives = 65/219 (29%), Gaps = 17/219 (7%)
Query: 93 VRQVADPVRRVPPQFS--IPPPALLEVMLDSPLNLSCVAVGSPMPFVKW-RKGQNIELTP 149
D + PQ S + A +EV + + + L + W K ++ P
Sbjct: 34 SESPEDLGCALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQP 93
Query: 150 DDKLPV-GRNVLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLD 206
L G + + ++TE++ Y S V ++ L +
Sbjct: 94 HFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNT----LLYTLRRPY 149
Query: 207 VKISEVTATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEISGIITTYYTVRNLSPYTEY 266
+ E V + + P + + + + ++ + + L T+
Sbjct: 150 FRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEK--VLHELFG-TDI 206
Query: 267 EFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRP 305
A N LGR + P T + ++
Sbjct: 207 R--CCARNELGR--ECTRLFTIDLNQTPQTTLPQLFLKV 241
Score = 47.7 bits (113), Expect = 1e-05
Identities = 17/121 (14%), Positives = 38/121 (31%), Gaps = 18/121 (14%)
Query: 103 VPPQFSIPPPALLEVMLDSPLNLSCVAV-GSPMPFVKWRKG---------QNIELTPDDK 152
+ P L + + PL + C AV + + W + ++
Sbjct: 226 LNQTPQTTLPQLF-LKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNR 284
Query: 153 LPVGRNVLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKIS 210
+ + V ++ YTC ++ S +V + K + + D +I
Sbjct: 285 TMIRILFAFVSSVARNDTGYYTCSSSKHPS---QSALVTIVEK--GFINATNSSEDYEID 339
Query: 211 E 211
+
Sbjct: 340 Q 340
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 57.1 bits (138), Expect = 2e-09
Identities = 21/114 (18%), Positives = 41/114 (35%), Gaps = 9/114 (7%)
Query: 104 PPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPV----GRNV 159
Q +I + E+ + +C A+G P + ++ ++ V R+
Sbjct: 2 LLQVTISLSKV-ELSVGESKFFTCTAIGEPESIDWYNPQ-GEKIISTQRVVVQKEGVRSR 59
Query: 160 LTLDRVTESE--NYTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISE 211
LT+ + Y C A G + +T V ++ V+P + K E
Sbjct: 60 LTIYNANIEDAGIYRCQATDAKGQTQEAT-VVLEIYQKLTFREVVSPQEFKQGE 112
Score = 55.6 bits (134), Expect = 8e-09
Identities = 17/96 (17%), Positives = 30/96 (31%), Gaps = 9/96 (9%)
Query: 103 VPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRK-GQNIELTPDDKLPV-GRNVL 160
F + E + C SP P V W + + D++ + N L
Sbjct: 95 QKLTFREVV-SPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNL 153
Query: 161 TLDRVTESE--NYTCIAA----SVLGVIETSTIVKV 190
+ + +S+ Y C + + IV V
Sbjct: 154 QILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNV 189
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 57.5 bits (139), Expect = 2e-09
Identities = 20/101 (19%), Positives = 39/101 (38%), Gaps = 6/101 (5%)
Query: 95 QVADPVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLP 154
D P + P + + + ++C A+G+P P + W K Q + +
Sbjct: 101 YEGDKTPAGFPVITQGP-GTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYS 159
Query: 155 VGRNVLTLDRVTESE--NYTCIAASVLGVIETST---IVKV 190
+ L ++ E + Y C+A + +G + VKV
Sbjct: 160 LKDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKV 200
Score = 51.3 bits (123), Expect = 3e-07
Identities = 24/121 (19%), Positives = 41/121 (33%), Gaps = 13/121 (10%)
Query: 103 VPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRK-GQNIELTPDDKLPVGRN--- 158
PP+ P V + + C A G P P + WRK G+ + T + +
Sbjct: 5 HPPEIIRKPQNQ-GVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGI 63
Query: 159 -VLTLDRVTESE---NYTCIAASVLG-VIETSTIVKVQCKYAPLLTLPV---APLDVKIS 210
+L ++ V Y C+A + +G + + + PV P I
Sbjct: 64 SILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIE 123
Query: 211 E 211
Sbjct: 124 V 124
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 57.3 bits (138), Expect = 2e-09
Identities = 21/126 (16%), Positives = 43/126 (34%), Gaps = 8/126 (6%)
Query: 71 AARSHARLAAQSVLRRGRLAHAVRQVADPVRRVPPQFSIPPPALLEVMLDSPLNLSCVAV 130
A +H+ + + + A Q + +R+ P F EV + + L C
Sbjct: 84 KATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSW--EVTGECNVLLKCKVA 141
Query: 131 GSPMPF-VKWRKGQNIELTPDDK--LPVGRNVLTLDRVTESE--NYTCIAASVLGVIETS 185
+ W K E++ D+K G L + ++ + Y I G ++
Sbjct: 142 NIKKETHIVWYKD-EREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSR 200
Query: 186 TIVKVQ 191
+ +
Sbjct: 201 LKLVDE 206
Score = 45.7 bits (108), Expect = 2e-05
Identities = 12/110 (10%), Positives = 29/110 (26%), Gaps = 7/110 (6%)
Query: 125 LSCVAVGSPMPFVKWRK-GQNIELTPDDKLPVGRNV----LTLDRVTESE--NYTCIAAS 177
S V + + I P K+ + RN + ++++ + + YT
Sbjct: 23 WMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQD 82
Query: 178 VLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISEVTATSVRLDWTYPSET 227
++ ++ + + L W E
Sbjct: 83 GKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGEC 132
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 54.3 bits (131), Expect = 3e-09
Identities = 13/90 (14%), Positives = 28/90 (31%), Gaps = 5/90 (5%)
Query: 104 PPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRNVLTLD 163
+ + V L L C + W + ++L ++ + + +
Sbjct: 3 SGSSGVEVESF-LVHPGDLLQLRCRLRDDV-QSINWLRD-GVQLAESNRTRITGEEVEVQ 59
Query: 164 RVTESE--NYTCIAASVLGVIETSTIVKVQ 191
++ Y C+ +S G T V V
Sbjct: 60 DSVPADSGLYACVTSSPSGSDTTYFSVNVS 89
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 54.6 bits (132), Expect = 3e-09
Identities = 21/107 (19%), Positives = 35/107 (32%), Gaps = 8/107 (7%)
Query: 104 PPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPV----GRNV 159
PQ I P +V + L G+ W K ++ + + V +
Sbjct: 7 GPQI-IQFPEDQKVRAGESVELFGKVTGTQPITCTWMKF-RKQIQESEHMKVENSENGSK 64
Query: 160 LTLDRVTESE--NYTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAP 204
LT+ + YT + + LG + + V K P P P
Sbjct: 65 LTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPPAGTPSGP 111
>3up1_A Interleukin-7 receptor subunit alpha; cytokine receptor,
fibronectin type 3 fold, membrane and SOL glycosylation,
immune system; HET: NAG FUC NGA; 2.15A {Homo sapiens}
PDB: 3di3_B* 3di2_B*
Length = 223
Score = 57.5 bits (138), Expect = 3e-09
Identities = 21/187 (11%), Positives = 54/187 (28%), Gaps = 11/187 (5%)
Query: 637 VTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQS 696
+T A+ P + N E + K L E Y + + + +
Sbjct: 39 LTCAFEDPDVNTTN---LEFEICGALVEVKCLNFRKLQEIYFIETKKFLLIGKSNICVKV 95
Query: 697 PRGEGATTPPIPVRTKQYVPGAPPQNVSCEPLSST-SIRISWEPPPVERSNGHIVYYKLQ 755
+ + V P ++S +++ +++ ++ + +
Sbjct: 96 ---GEKSLTCKKIDLTTIVKPEAPFDLSVVYREGANDFVVTFNTSHLQKKYVKVLMHDVA 152
Query: 756 FVETGRSDSEASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDGPS----SYPITIRT 811
+ + + + + + + +L+ Y I V + S RT
Sbjct: 153 YRQEKDENKWTHVNLSSTKLTLLQRKLQPAAMYEIKVRSIPDHYFKGFWSEWSPSYYFRT 212
Query: 812 HEDDPSE 818
E + S
Sbjct: 213 PEINNSS 219
Score = 42.9 bits (100), Expect = 2e-04
Identities = 18/111 (16%), Positives = 37/111 (33%), Gaps = 11/111 (9%)
Query: 201 PVAPLDVKIS-EVTATSVRLDWTYPSE-----TLLYYVIQYKPKAANTPYSEISGIITTY 254
P AP D+ + A + + +L + + Y+ + ++ ++ T
Sbjct: 113 PEAPFDLSVVYREGANDFVVTFNTSHLQKKYVKVLMHDVAYRQEKDENKWTHVNLSSTKL 172
Query: 255 -YTVRNLSPYTEYEFYIIA-VNNLGRGPP---SSPAVITTGETEPGTAPRD 300
R L P YE + + ++ +G S T E + D
Sbjct: 173 TLLQRKLQPAAMYEIKVRSIPDHYFKGFWSEWSPSYYFRTPEINNSSGEMD 223
Score = 40.2 bits (93), Expect = 0.001
Identities = 25/142 (17%), Positives = 46/142 (32%), Gaps = 11/142 (7%)
Query: 448 YPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSS-TMVIQWDEPE 506
L GE + T T +P AP D+ V + V+ ++
Sbjct: 80 TKKFLLIGKSNICVKVGEKSLTCKKIDLTTIVKPE-APFDLSVVYREGANDFVVTFNTSH 138
Query: 507 TPNGQITG--YKVYYTQDQSLPMSAWETQVVDNNQLT-TISDLTPHTIYTIRVQAFTSVG 563
+ + V Y Q++ + W + + +LT L P +Y I+V++
Sbjct: 139 LQKKYVKVLMHDVAYRQEKD--ENKWTHVNLSSTKLTLLQRKLQPAAMYEIKVRSIPDHY 196
Query: 564 PGPL----SAPVLVKTQQGVPS 581
S +T + S
Sbjct: 197 FKGFWSEWSPSYYFRTPEINNS 218
Score = 29.4 bits (65), Expect = 4.2
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 4/42 (9%)
Query: 856 LELNVTGLQPDTIYTIQVAALTRKGDGDR----SKPETIKTP 893
L L LQP +Y I+V ++ S +TP
Sbjct: 172 LTLLQRKLQPAAMYEIKVRSIPDHYFKGFWSEWSPSYYFRTP 213
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 58.5 bits (141), Expect = 3e-09
Identities = 21/118 (17%), Positives = 34/118 (28%), Gaps = 23/118 (19%)
Query: 95 QVADPVRRVPPQFSIPPPALLEVMLDSPLNLSCVA---VGSPMPFVKWRK--GQNIELTP 149
++ P I P + L S L + C G+P+ + W +IE
Sbjct: 217 RIKKKKEETIPVI-ISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAY 275
Query: 150 DDK--------------LPVGRNVLTLDRVTESE---NYTCIAASVLGVIETSTIVKV 190
L D VT + ++ C+ + L T VK
Sbjct: 276 PGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVKE 333
Score = 52.0 bits (124), Expect = 4e-07
Identities = 17/120 (14%), Positives = 33/120 (27%), Gaps = 13/120 (10%)
Query: 104 PPQFSIPPPALLEVMLDSPLNLSC-------VAVGSPMPFVKWRK-GQNIELTPDDK--L 153
+ P+ L C A SP + W K + +++ +
Sbjct: 18 CRFRGRHYKREF-RLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRM 76
Query: 154 PVGRNVLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISE 211
L L + + Y C + + S ++V L P + +S
Sbjct: 77 WAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLST 136
Score = 41.6 bits (97), Expect = 0.001
Identities = 25/150 (16%), Positives = 48/150 (32%), Gaps = 18/150 (12%)
Query: 100 VRRVPPQFSIPPPALLEVMLDSPLNLSCV-----AVGSPMPFVKWRK-GQNIELTPDDKL 153
V F + L + L C ++W K ++ + L
Sbjct: 115 VFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFL 174
Query: 154 PV-GRNVLTLDRVTESE--NYTCIAASVLGVIETS-------TIVKVQCKYAPLLTLPVA 203
V G L + V + Y C+ + + I K + + P++ P+
Sbjct: 175 SVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLK 234
Query: 204 PLDVKI-SEVTAT-SVRLDWTYPSETLLYY 231
+ + S +T V L P T+L++
Sbjct: 235 TISASLGSRLTIPCKVFLGTGTPLTTMLWW 264
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 58.3 bits (140), Expect = 4e-09
Identities = 20/123 (16%), Positives = 37/123 (30%), Gaps = 18/123 (14%)
Query: 87 GRLAHAVRQVADPVRRVPPQ---FSIPPPALLEVMLDSPLNLSCVAVGSPMP----FVKW 139
V + +P Q F + + V + P N++C AV + + + W
Sbjct: 207 RIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDW 266
Query: 140 RK--------GQNIELTPDDKLPVGRNVLTLDRVTES---ENYTCIAASVLGVIETSTIV 188
+ + L + VTE YTC + +T V
Sbjct: 267 ENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTV 326
Query: 189 KVQ 191
++
Sbjct: 327 VLE 329
Score = 49.4 bits (117), Expect = 3e-06
Identities = 21/132 (15%), Positives = 36/132 (27%), Gaps = 7/132 (5%)
Query: 91 HAVRQVADPVRRVPPQFSIPPPALLEVMLDSPLNLSC-VAVGSPMPFVKWRKGQNIELTP 149
V+ + R PP IP L ++L C + + W K +
Sbjct: 115 DCVQGIVRSHIRKPPSC-IPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIID 173
Query: 150 DDKLPVGRNVLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDV 207
K L + + Y C I+ +V L +P
Sbjct: 174 GTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRC---KILTVIPSQDHRF 230
Query: 208 KISEVTATSVRL 219
K+ +V +
Sbjct: 231 KLILDPKINVTI 242
Score = 30.6 bits (68), Expect = 2.3
Identities = 12/98 (12%), Positives = 25/98 (25%), Gaps = 14/98 (14%)
Query: 103 VPPQFSIPPPALLEVMLDSPLNLSCVAVGSPM---------PFVKWRKGQNIELTPDDKL 153
+ P L P + C + + V W K + ++
Sbjct: 27 LNPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRV 86
Query: 154 PVGRNVLTLDRVTESEN---YTCIAASVLGVIETSTIV 188
L + T +++ Y C + G +
Sbjct: 87 K--NGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVR 122
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 57.7 bits (139), Expect = 5e-09
Identities = 22/125 (17%), Positives = 41/125 (32%), Gaps = 10/125 (8%)
Query: 72 ARSHARLAAQSVLRRGRLAHAVRQVADPVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVG 131
S L + + A RQ + +R+ P F EV + + L C
Sbjct: 192 NHSTVVLVGDVFKKLQKEAEFQRQ--EWIRKQGPHFVEYLS--WEVTGECNVLLKCKVAN 247
Query: 132 SPMPF-VKWRKGQNIELTPDDKLPV--GRNVLTLDRVTESE--NYTCIAASVLGVIETST 186
+ W K E++ D+K G L + ++ + Y I G ++
Sbjct: 248 IKKETHIVWYKD-EREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRL 306
Query: 187 IVKVQ 191
+ +
Sbjct: 307 KLVDE 311
Score = 53.1 bits (127), Expect = 2e-07
Identities = 16/105 (15%), Positives = 32/105 (30%), Gaps = 9/105 (8%)
Query: 103 VPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPV----GRN 158
+ P ++ LN C +P W K + +L V +
Sbjct: 2 IDPFT-KEVVVNVDDDGVISLNFEC-DKMTPKSEFSWSKD-YVSTEDSPRLEVESKGNKT 58
Query: 159 VLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQCKYAPLLTLP 201
+T + + Y+C G+ + I + + K L+
Sbjct: 59 KMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHE 103
Score = 51.1 bits (122), Expect = 6e-07
Identities = 11/132 (8%), Positives = 30/132 (22%), Gaps = 9/132 (6%)
Query: 99 PVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPV--- 155
+ P A+ + S V + E+ K +
Sbjct: 102 HEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFN-EKEIFEGPKYKMHID 160
Query: 156 ---GRNVLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKIS 210
G + ++++ + + YT ++ ++ +
Sbjct: 161 RNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRK 220
Query: 211 EVTATSVRLDWT 222
+ L W
Sbjct: 221 QGPHFVEYLSWE 232
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 57.9 bits (139), Expect = 7e-09
Identities = 29/234 (12%), Positives = 62/234 (26%), Gaps = 29/234 (12%)
Query: 106 QFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRNVLTLDRV 165
F + + ++ L L+ + P V+ R P K G L++ ++
Sbjct: 97 VFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRS-------PRGKNIQGGKTLSVSQL 149
Query: 166 TESE--NYTCIAASVLGVIETSTIVKVQCKY-APLLTLPVAPLDVKIS-------EVTAT 215
+ +TC +E + V A + V+ S E
Sbjct: 150 ELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTG 209
Query: 216 SVRLDWTYPSETLLYYVIQY--------KPKAANTPYSEISGIITTYYTVRNLSPYTE-- 265
S L W + I + + P ++ + + T+ P
Sbjct: 210 SGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGS 269
Query: 266 YEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEPE 319
+ G+ V+ +V +S +++
Sbjct: 270 GNLTLALEAKTGKLHQEVNLVVMRATQLQKNLT--CEVWGPTSPKLMLSLKLEN 321
Score = 29.4 bits (65), Expect = 5.3
Identities = 9/89 (10%), Positives = 21/89 (23%), Gaps = 22/89 (24%)
Query: 121 SPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPV--------------------GRNVL 160
+ L+C A W+ I++ + + G L
Sbjct: 10 DTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPL 69
Query: 161 TLDRVTESE--NYTCIAASVLGVIETSTI 187
+ + + Y C ++
Sbjct: 70 IIKNLKIEDSDTYICEVEDQKEEVQLLVF 98
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 53.2 bits (127), Expect = 1e-08
Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 16/110 (14%)
Query: 97 ADPVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRK-------------GQ 143
ADP R+ + P +E+ + L L+C A + + +
Sbjct: 1 ADPGYRIYD-VVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNR 59
Query: 144 NIELTPDDKLPVGRNVLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
+++ ++ + LT+D VT S+ YTC A+S L + ST V+V
Sbjct: 60 DLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVH 109
>1k85_A Chitinase A1; fibronectin type III domain, chitin binding domain,
carbohydrase, horizontal gene transfer, hydrolase; NMR
{Bacillus circulans} SCOP: b.1.2.1
Length = 88
Score = 51.5 bits (124), Expect = 2e-08
Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 6/90 (6%)
Query: 201 PVAPLDVKISEVTATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEISGIITTYYTVRNL 260
P AP ++ + T +S+ L WT ++ V Y + ++G T T+ L
Sbjct: 4 PTAPTNLASTAQTTSSITLSWTASTDN--VGVTGYDVYNGTALATTVTG---TTATISGL 58
Query: 261 SPYTEYEFYIIAVNNLG-RGPPSSPAVITT 289
+ T Y F + A + G S+ + T
Sbjct: 59 AADTSYTFTVKAKDAAGNVSAASNAVSVKT 88
Score = 48.4 bits (116), Expect = 2e-07
Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 11/94 (11%)
Query: 483 TAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLTT 542
TAP ++ ++S++ + W T N +TGY VY +L + T T
Sbjct: 5 TAPTNLASTAQTTSSITLSWTAS-TDNVGVTGYDVY--NGTALATTVTGTT-------AT 54
Query: 543 ISDLTPHTIYTIRVQAFTSVG-PGPLSAPVLVKT 575
IS L T YT V+A + G S V VKT
Sbjct: 55 ISGLAADTSYTFTVKAKDAAGNVSAASNAVSVKT 88
Score = 41.5 bits (98), Expect = 7e-05
Identities = 19/91 (20%), Positives = 38/91 (41%), Gaps = 12/91 (13%)
Query: 624 PRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVE--TYSLTG 681
P +L + +++TL+W+ T + Y++Y V T +++G
Sbjct: 7 PTNLASTAQTTSSITLSWTAST-DNVGVTGYDVYNGTA--------LATTVTGTTATISG 57
Query: 682 LYPNTLYYIWLAAQSPRG-EGATTPPIPVRT 711
L +T Y + A+ G A + + V+T
Sbjct: 58 LAADTSYTFTVKAKDAAGNVSAASNAVSVKT 88
Score = 34.6 bits (80), Expect = 0.020
Identities = 9/41 (21%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 580 PSQPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDT 620
P+ P +L + +++TL+W+ T + Y++Y
Sbjct: 4 PTAPTNLASTAQTTSSITLSWTAST-DNVGVTGYDVYNGTA 43
Score = 31.1 bits (71), Expect = 0.26
Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 8/85 (9%)
Query: 296 TAPRDVQVRPLSSSTMVIQWDEPETPNGQITA----KHHRRIGLVE--TYSLTGLYPNTL 349
TAP ++ ++S++ + W T N +T V T +++GL +T
Sbjct: 5 TAPTNLASTAQTTSSITLSWTAS-TDNVGVTGYDVYNGTALATTVTGTTATISGLAADTS 63
Query: 350 YYIWLAAQSPRG-EGATTPPIPVRT 373
Y + A+ G A + + V+T
Sbjct: 64 YTFTVKAKDAAGNVSAASNAVSVKT 88
Score = 31.1 bits (71), Expect = 0.31
Identities = 20/98 (20%), Positives = 40/98 (40%), Gaps = 12/98 (12%)
Query: 715 VPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQ 774
+ P N++ +++SI +SW N + Y + + A+ VT
Sbjct: 2 MAPTAPTNLASTAQTTSSITLSWTAST---DNVGVTGYDVY-----NGTALATTVT---G 50
Query: 775 TSFVLDELKKWTEYRIWVLAGTSIGD-GPSSYPITIRT 811
T+ + L T Y V A + G+ +S ++++T
Sbjct: 51 TTATISGLAADTSYTFTVKAKDAAGNVSAASNAVSVKT 88
Score = 27.6 bits (62), Expect = 5.0
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 859 NVTGLQPDTIYTIQVAALTRKGD-GDRSKPETIKT 892
++GL DT YT V A G+ S ++KT
Sbjct: 54 TISGLAADTSYTFTVKAKDAAGNVSAASNAVSVKT 88
>2csp_A RIM-BP2, RIM binding protein 2; FN3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 130
Score = 52.8 bits (126), Expect = 2e-08
Identities = 27/126 (21%), Positives = 48/126 (38%), Gaps = 6/126 (4%)
Query: 702 ATTPPIPVRTKQYVPGAPPQNVSCEP-LSSTSIRISWEPP---PVERSNGHIVYYKLQFV 757
+ + + T P APPQ+V+ + ++ +IR+SW PP P SNG V +
Sbjct: 3 SGSSGVEFSTLPAGPPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGVYA 62
Query: 758 ETGRSDSEASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDPS 817
+ R + T+ L L+ + V ++ G+ S + P
Sbjct: 63 KGQRVAEVIFPTA--DSTAVELVRLRSLEAKGVTVRTLSAQGESVDSAVAAVPPELLVPP 120
Query: 818 EVCPTQ 823
P+
Sbjct: 121 TPHPSG 126
Score = 52.1 bits (124), Expect = 4e-08
Identities = 23/125 (18%), Positives = 42/125 (33%), Gaps = 11/125 (8%)
Query: 467 ATTPPIPVRTKQYEPGTAPRDVQVRP-LSSSTMVIQWDEPETPN------GQITGYKVYY 519
+ + + T P P+DV V+ ++ +T+ + W P +TGY VY
Sbjct: 3 SGSSGVEFSTLPAGPPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGVYA 62
Query: 520 TQDQSLPMSAWETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGV 579
+ + + L + V+ ++ G SA V + V
Sbjct: 63 KGQRVAEVIFPTADST----AVELVRLRSLEAKGVTVRTLSAQGESVDSAVAAVPPELLV 118
Query: 580 PSQPR 584
P P
Sbjct: 119 PPTPH 123
Score = 33.6 bits (76), Expect = 0.097
Identities = 20/113 (17%), Positives = 34/113 (30%), Gaps = 18/113 (15%)
Query: 281 PSSPAVITTGETEPGTAPRDVQVRP-LSSSTMVIQWDEPETP-----------------N 322
SS +T P P+DV V+ ++ +T+ + W P
Sbjct: 4 GSSGVEFSTLPAGPPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGVYAK 63
Query: 323 GQITAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQ 375
GQ A+ L L + + S +GE + V +
Sbjct: 64 GQRVAEVIFPTADSTAVELVRLRSLEAKGVTVRTLSAQGESVDSAVAAVPPEL 116
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 52.1 bits (125), Expect = 2e-08
Identities = 25/115 (21%), Positives = 42/115 (36%), Gaps = 14/115 (12%)
Query: 103 VPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRK-GQNIELTPDDKLPVGRNV-- 159
PP+ +L E L + V G+P P + W GQ + + + +
Sbjct: 7 YPPRVV----SLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEI 62
Query: 160 ----LTLDRVTESE--NYTCIAASVLGVIETSTIVKVQCKYAPLLTL-PVAPLDV 207
L ++ T NYT IA + LG + + P+ + P P+ V
Sbjct: 63 SEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEVSPTPPITV 117
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 51.3 bits (123), Expect = 2e-08
Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 4/90 (4%)
Query: 103 VPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRNVLTL 162
P L V L L C + W + ++L ++ + + +
Sbjct: 7 AQPWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRD-GVQLVESNRTRITGEEVEV 64
Query: 163 DRVTESE--NYTCIAASVLGVIETSTIVKV 190
++ Y C+ +S G T V V
Sbjct: 65 RDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 56.2 bits (135), Expect = 3e-08
Identities = 17/125 (13%), Positives = 41/125 (32%), Gaps = 15/125 (12%)
Query: 99 PVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPF-VKWRKGQNIELTPDDKLPVGR 157
P + P S+ + + ++C W++ N + +K
Sbjct: 206 PAFKAVPVVSVSKASY-LLREGEEFTVTCTIKDVSSSVYSTWKRE-NSQTKLQEKYNSWH 263
Query: 158 N---------VLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLD 206
+ LT+ ++ + C A + G +T ++V K + P+
Sbjct: 264 HGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDK-GFINIFPMINTT 322
Query: 207 VKISE 211
V +++
Sbjct: 323 VFVND 327
Score = 53.5 bits (128), Expect = 2e-07
Identities = 17/105 (16%), Positives = 31/105 (29%), Gaps = 13/105 (12%)
Query: 102 RVPPQFSIPP--PALLEVMLDSPLNLSCVAVGSPMP-FVKWRK-GQNIELTPDDKLPV-- 155
+I P + V ++L P P +W + +D
Sbjct: 308 VDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSEN 367
Query: 156 -----GRNVLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQCK 193
+ L L R+ +E YT + ++ + V V K
Sbjct: 368 ESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTK 412
Score = 48.5 bits (115), Expect = 8e-06
Identities = 15/98 (15%), Positives = 23/98 (23%), Gaps = 17/98 (17%)
Query: 111 PPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRN------------ 158
P +L L CVA G P P + W E +
Sbjct: 412 KPEILTYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGK 471
Query: 159 ---VLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
++D C A + +G +
Sbjct: 472 LVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFK 509
Score = 45.8 bits (108), Expect = 6e-05
Identities = 17/143 (11%), Positives = 41/143 (28%), Gaps = 17/143 (11%)
Query: 102 RVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPV-GRNVL 160
R P + + L D+ + C + + Q L D + + +
Sbjct: 112 RDPAKLFLVDR-SLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGI 170
Query: 161 TLDRVTESEN---YTCIAASVLGVIETSTI---VKVQCKYAPLLTLPVAPLDVKISE--- 211
+ V + + C + + V+ K P++++ A ++ E
Sbjct: 171 MIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFT 230
Query: 212 ----VTATSVRLD--WTYPSETL 228
+ S + W +
Sbjct: 231 VTCTIKDVSSSVYSTWKRENSQT 253
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 55.9 bits (135), Expect = 3e-08
Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 5/93 (5%)
Query: 104 PPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRK--GQNIELTPDDKLPVGRN-VL 160
+ + V + C A G P P + W + + +L V + L
Sbjct: 384 RARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTL 443
Query: 161 TLDRVTESEN--YTCIAASVLGVIETSTIVKVQ 191
+ +N Y CIAA+ G + V+
Sbjct: 444 EVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVR 476
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 56.0 bits (134), Expect = 3e-08
Identities = 24/105 (22%), Positives = 34/105 (32%), Gaps = 8/105 (7%)
Query: 87 GRLAHAVRQVADPVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIE 146
G+L H + V P P +S C A G+P+P +K K
Sbjct: 352 GQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFP 411
Query: 147 LTPDDKLPVGRNVLTLDRVTESENYTCIAASVLGVIETSTIVKVQ 191
L + + V R+ Y C A S G + V V
Sbjct: 412 LPIGESVTVTRD--------LEGTYLCRARSTQGEVTREVTVNVL 448
Score = 34.5 bits (78), Expect = 0.19
Identities = 28/257 (10%), Positives = 55/257 (21%), Gaps = 16/257 (6%)
Query: 46 SSSTMVIQWDEPETPNGQITHPPTRAARSHARLAAQSVLR-RGRLAHAVRQVADPVR-RV 103
M++ + P + R + + S +
Sbjct: 25 CDQPMLLGIETPLPKKELLLPGNNRKVYELSNVQEDSQPMCYSNCPDGQSTAKTFLTVYW 84
Query: 104 PPQFSIPPPALLEVMLDSPLNLSCVAVGS---PMPFVKWRKGQNIELTPDDKLPVGRNVL 160
P+ P + L L C G V +G+
Sbjct: 85 TPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTT 144
Query: 161 TLDRVTESE--NYTCIAASVLG-----VIETSTIVKVQCKYAPLLTLPVAPLDVKISEVT 213
T+ + N++C L + E ++ + T P + T
Sbjct: 145 TVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDT 204
Query: 214 ATSV--RLDWTYPSETLLYYVIQYKPKAANTPYSEISGIITTYYTVRNLSPYTEYEFYII 271
+V LD +P ++ + T
Sbjct: 205 QGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRL--T 262
Query: 272 AVNNLGRGPPSSPAVIT 288
LG + +T
Sbjct: 263 CAVILGNQSQETLQTVT 279
Score = 33.7 bits (76), Expect = 0.31
Identities = 15/88 (17%), Positives = 25/88 (28%), Gaps = 7/88 (7%)
Query: 106 QFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRNVLT--LD 163
Q S+ P + + + ++C + L + L G N L
Sbjct: 1 QTSVSPSKV-ILPRGGSVLVTCSTSCDQPMLLGIET----PLPKKELLLPGNNRKVYELS 55
Query: 164 RVTESENYTCIAASVLGVIETSTIVKVQ 191
V E C + G T + V
Sbjct: 56 NVQEDSQPMCYSNCPDGQSTAKTFLTVY 83
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 54.9 bits (131), Expect = 5e-08
Identities = 25/120 (20%), Positives = 42/120 (35%), Gaps = 21/120 (17%)
Query: 93 VRQVADPVRRVPPQFSIPP-PALLEVMLDSPLNLSCVAV----GSPMPFVKWRK-GQNIE 146
V+ V P VPP P + E L + C V W G+ +
Sbjct: 213 VKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPD 272
Query: 147 -LTPDDKLPVGRN-----------VLTLDRVTESE---NYTCIAASVLGVIETSTIVKVQ 191
+T D + + +L++ +VT + +Y C A S G + + VK +
Sbjct: 273 DITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQK 332
Score = 38.7 bits (89), Expect = 0.006
Identities = 17/97 (17%), Positives = 32/97 (32%), Gaps = 8/97 (8%)
Query: 124 NLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRNVLTLDRVTESE--NYTCIAASVLG- 180
N+ S P + W G ++ + + L+ S NYTC+
Sbjct: 144 NVDGYFPSSVKPTITWYMGCY-KIQNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPENG 202
Query: 181 -VIETSTIVKVQCKYAPLLTLP---VAPLDVKISEVT 213
+ + V+ +P +P +P D + E
Sbjct: 203 RTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKE 239
Score = 35.6 bits (81), Expect = 0.059
Identities = 17/109 (15%), Positives = 38/109 (34%), Gaps = 10/109 (9%)
Query: 120 DSPLNLSCVAVGSPMPFVKWRK---GQNIELTPDDKLPVGR-----NVLTLDRVTESE-- 169
+ L + S + W +++E + +LP R +VL ++
Sbjct: 33 EHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTG 92
Query: 170 NYTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISEVTATSVR 218
NYTC+ + + + ++V K + + P+ E +
Sbjct: 93 NYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRIT 141
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 51.2 bits (123), Expect = 5e-08
Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 13/100 (13%)
Query: 99 PVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPV--- 155
V+ I ++V S C + V W L ++ +
Sbjct: 8 LVQGRRVHI-IEDLEDVDVQEGSSATFRCRISPANYEPVHWFLD-KTPLHANELNEIDAQ 65
Query: 156 --GRNVLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
G +VLTL ++ + A G S ++V
Sbjct: 66 PGGYHVLTLRQLALKDSGTIYFEA----GDQRASAALRVT 101
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 51.6 bits (123), Expect = 5e-08
Identities = 21/119 (17%), Positives = 39/119 (32%), Gaps = 19/119 (15%)
Query: 91 HAVRQVADPVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPD 150
H P F + P + + + L C AVGSP+P ++W
Sbjct: 8 HHHSSGLVPRGSHMAGF-VQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDIC 66
Query: 151 DKLPVGRN----------------VLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
+L G +++D + E + Y C A++ + +V+
Sbjct: 67 SQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVK 125
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 53.2 bits (127), Expect = 6e-08
Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 5/94 (5%)
Query: 102 RVPPQFSIPPPALLEVMLDSPLNLSCVAV-GSPMPFVKWRKGQNIELTPDDKLPVGRN-V 159
V P + + + L C GS +W+K + + P L + V
Sbjct: 119 LVKPSGT-RCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPV 177
Query: 160 LTLDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
+++ + Y+C + +G + + V
Sbjct: 178 ISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVV 211
Score = 33.5 bits (76), Expect = 0.20
Identities = 15/114 (13%), Positives = 27/114 (23%), Gaps = 33/114 (28%)
Query: 111 PPALLEVMLDSPLNLSCVAVGSPMP----FVKWRKGQNIELTPD---------------- 150
P +E L C SP ++W + D
Sbjct: 6 PEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYY 65
Query: 151 -----------DKLPVGRNVLTLDRVTESEN--YTCIAASVLGVIETSTIVKVQ 191
+ + G + + + S+ Y C GV ++ V
Sbjct: 66 PDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVL 119
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 52.9 bits (127), Expect = 7e-08
Identities = 25/105 (23%), Positives = 38/105 (36%), Gaps = 15/105 (14%)
Query: 100 VRRVPPQFSIPPPALLEVMLDSPLNLSCVAV-GSPMPFVKWRK-GQNIELTPDDKLPVGR 157
+ + F + P V L C G P P + W K G ++
Sbjct: 104 IAVLRDDFRVEP-KDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASS 162
Query: 158 NV-------LTLDRVTESE--NYTCIAASVLGVIETST---IVKV 190
V L + V + NY CIA +++G E+S IV+V
Sbjct: 163 RVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQV 207
Score = 51.4 bits (123), Expect = 2e-07
Identities = 18/103 (17%), Positives = 36/103 (34%), Gaps = 11/103 (10%)
Query: 99 PVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRK-GQNIELTPDDK----L 153
+ P+ P L V + P L+C G P P ++W K G+ +
Sbjct: 4 AGQYQSPRIIEHPTDL-VVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQF 62
Query: 154 PVG----RNVLTLDRVTESENYTCIAASVLGVIET-STIVKVQ 191
G + + + Y C+A + +G + +++
Sbjct: 63 KDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIA 105
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 52.9 bits (127), Expect = 8e-08
Identities = 27/151 (17%), Positives = 50/151 (33%), Gaps = 26/151 (17%)
Query: 61 NGQITHPPTRAARSHARLAAQSVLRRGRLAHAVRQVADP--------------------- 99
G+ RSH L L R+ H + D
Sbjct: 46 GGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASL 105
Query: 100 -VRRVPPQFSIPPPALLEVMLDSPLNLSCVAV-GSPMPFVKWRKGQNIELTPDDKLPVGR 157
V + F P + + V + P + C G P P + W+K + D+++ +
Sbjct: 106 EVAILRDDFRQNP-SDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRG 164
Query: 158 NVLTLDRVTESE--NYTCIAASVLGVIETST 186
L + +S+ Y C+ +++G E+
Sbjct: 165 GKLMITYTRKSDAGKYVCVGTNMVGERESEV 195
Score = 50.6 bits (121), Expect = 4e-07
Identities = 26/109 (23%), Positives = 38/109 (34%), Gaps = 14/109 (12%)
Query: 100 VRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRK-GQNIE-----------L 147
PP+ P L V P L+C A G P P ++W K G+ +E L
Sbjct: 5 QEDFPPRIVEHPSDL-IVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRML 63
Query: 148 TPDDKLPVGRNVLTLDRVTESENYTCIAASVLGVIETSTIVKVQCKYAP 196
P L R V + Y C+A + LG + ++
Sbjct: 64 LPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHD-ASLEVAILR 111
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 54.0 bits (129), Expect = 1e-07
Identities = 27/196 (13%), Positives = 54/196 (27%), Gaps = 22/196 (11%)
Query: 19 PLPPLIPGYILVT-EPGTAPRDVQVRPLSSS---TMVIQW----DEPETPNGQITHPPTR 70
P + ++ + G + + S++ V+ W T
Sbjct: 131 PTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTV 190
Query: 71 AARSHARLAAQSVLRRGRLA----HAVRQVADPVR---RVPPQFSIPPPALLEVMLDSPL 123
S RL + LA + + + + + + P+ +I + +
Sbjct: 191 TVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDV 250
Query: 124 NLSCVAVGSPMPF-VKWRKGQNIELTPDDKLPVGRNVLTLDRVTESEN--YTCIAASVLG 180
L+C A +P W P R + + S Y C A + +G
Sbjct: 251 KLTCKADANPPATEYHWTTLNGSL--PKGVEAQNRTLFFKGPINYSLAGTYICEATNPIG 308
Query: 181 VIETSTIVKVQCKYAP 196
V + A
Sbjct: 309 TRSGQVEVNIT--EAA 322
>2dle_A Receptor-type tyrosine-protein phosphatase ETA; protein-tyrosine
phosphatase ETA, R-PTP-ETA, HPTP ETA, protein-tyrosine
phosphatase receptor type J; NMR {Homo sapiens}
Length = 104
Score = 50.1 bits (119), Expect = 1e-07
Identities = 17/94 (18%), Positives = 28/94 (29%), Gaps = 3/94 (3%)
Query: 199 TLPVAPLDVKISEVTATSVRLDWTYP-SETLLYYVIQYKPKAANTPYSEISGIITTYYTV 257
+ + DV ++ATS+ L W +E+ Y + + +
Sbjct: 6 SGAIQVFDVTAVNISATSLTLIWKVSDNESSSNYTYKIHVAGETDSSNLNVS--EPRAVI 63
Query: 258 RNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGE 291
L T Y + V G P V T
Sbjct: 64 PGLRSSTFYNITVCPVLGDIEGTPGFLQVHTPPV 97
Score = 42.0 bits (98), Expect = 7e-05
Identities = 13/84 (15%), Positives = 27/84 (32%), Gaps = 6/84 (7%)
Query: 483 TAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLTT 542
DV +S++++ + W + + YK++ + + + +
Sbjct: 9 IQVFDVTAVNISATSLTLIWKVSDNESSSNYTYKIHVAGETD------SSNLNVSEPRAV 62
Query: 543 ISDLTPHTIYTIRVQAFTSVGPGP 566
I L T Y I V G
Sbjct: 63 IPGLRSSTFYNITVCPVLGDIEGT 86
Score = 39.7 bits (92), Expect = 4e-04
Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 11/104 (10%)
Query: 719 PPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFV 778
+V+ +S+TS+ + W+ N Y + G +DS V ++ V
Sbjct: 10 QVFDVTAVNISATSLTLIWKVSD----NESSSNYTYKIHVAGETDSSNLNV---SEPRAV 62
Query: 779 LDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHEDDPSEVCPT 822
+ L+ T Y I V + P ++ H P P+
Sbjct: 63 IPGLRSSTFYNITVCP---VLGDIEGTPGFLQVH-TPPVPSGPS 102
Score = 36.2 bits (83), Expect = 0.006
Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 11/93 (11%)
Query: 624 PRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVET-YSLTGL 682
D+ AV+I T++TL W + + +Y+++ A + + E + GL
Sbjct: 11 VFDVTAVNISATSLTLIWKVSDNESSSNYTYKIHV----AGETDSSNLNVSEPRAVIPGL 66
Query: 683 YPNTLYYIWLAAQSPRGEG------ATTPPIPV 709
+T Y I + EG TPP+P
Sbjct: 67 RSSTFYNITVCPVLGDIEGTPGFLQVHTPPVPS 99
Score = 33.1 bits (75), Expect = 0.071
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 575 TQQGVPSQPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYW 617
+ Q D+ AV+I T++TL W + + +Y+++
Sbjct: 3 SGSSGAIQVFDVTAVNISATSLTLIWKVSDNESSSNYTYKIHV 45
Score = 32.7 bits (74), Expect = 0.097
Identities = 17/99 (17%), Positives = 34/99 (34%), Gaps = 16/99 (16%)
Query: 288 TTGETEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITAKHHRRIGLVET--------- 338
++G + DV +S++++ + W + + G ++
Sbjct: 2 SSGSSGA-IQVFDVTAVNISATSLTLIWKVSDNESSSNYTYKIHVAGETDSSNLNVSEPR 60
Query: 339 YSLTGLYPNTLYYIWLAAQSPRGEG------ATTPPIPV 371
+ GL +T Y I + EG TPP+P
Sbjct: 61 AVIPGLRSSTFYNITVCPVLGDIEGTPGFLQVHTPPVPS 99
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 53.6 bits (128), Expect = 1e-07
Identities = 34/181 (18%), Positives = 52/181 (28%), Gaps = 12/181 (6%)
Query: 105 PQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRK-GQNIELTPDDKLPVGRNVLTLD 163
P + P V + + L C G + W T + LTL
Sbjct: 159 PTLKVQVPNA-SVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLA 217
Query: 164 RVTESEN---YTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKIS-EVTATSV-R 218
VT N TC A + +G E S V V + L V I V
Sbjct: 218 NVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHTAVEMHHWCIPFSVDGQPAPS 277
Query: 219 LDWTYPSETLLYY-VIQYKPKAANTPYSEISGIITTYYTVRNLSPYTEYEFYIIAVNNLG 277
L W + L I + + G + + + + ++A N G
Sbjct: 278 LRWLFNGSVLNETSFIFTEFLEPAANETVRHGCL----RLNQPTHVNNGNYTLLAANPFG 333
Query: 278 R 278
+
Sbjct: 334 Q 334
Score = 44.0 bits (103), Expect = 1e-04
Identities = 16/77 (20%), Positives = 24/77 (31%), Gaps = 12/77 (15%)
Query: 127 CVAVGSPMPFVKWRK-GQNIELTPDDKLPVGRNV---------LTLDRVTESEN--YTCI 174
G P P ++W G + T L L++ T N YT +
Sbjct: 268 FSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLL 327
Query: 175 AASVLGVIETSTIVKVQ 191
AA+ G S +
Sbjct: 328 AANPFGQASASIMAAFM 344
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 50.3 bits (120), Expect = 1e-07
Identities = 17/103 (16%), Positives = 29/103 (28%), Gaps = 15/103 (14%)
Query: 102 RVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMP-FVKWRK-GQNIELTPDDKLPV---- 155
PP S + + C +P P + W +E + V
Sbjct: 12 NGPPIISSTQTQ--HALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETIS 69
Query: 156 ----GRNVLTLDRVTES---ENYTCIAASVLGVIETSTIVKVQ 191
+ LT+ + + Y C A + G +K Q
Sbjct: 70 TEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQ 112
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 51.7 bits (123), Expect = 2e-07
Identities = 23/120 (19%), Positives = 45/120 (37%), Gaps = 15/120 (12%)
Query: 87 GRLAHAVRQVADPVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWR------ 140
++ + V + P +E+ + L L+C A + +
Sbjct: 87 DESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSS 146
Query: 141 -------KGQNIELTPDDKLPVGRNVLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
++++ ++ + LT+D VT S+ YTC A+S L + ST V+V
Sbjct: 147 KHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVH 206
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 51.7 bits (123), Expect = 2e-07
Identities = 19/104 (18%), Positives = 34/104 (32%), Gaps = 2/104 (1%)
Query: 106 QFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRNVLTLDRV 165
+ P + + ++L+C G PF WR + L + LT++ V
Sbjct: 2 KIETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPV 61
Query: 166 TESEN--YTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDV 207
+ Y C A +E V++ PL+
Sbjct: 62 SFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEA 105
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 49.4 bits (118), Expect = 2e-07
Identities = 30/111 (27%), Positives = 42/111 (37%), Gaps = 18/111 (16%)
Query: 100 VRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRK-GQNIELTPDDK------ 152
PP+ P L+ V P L+C A G P P ++W K G+ +E DD
Sbjct: 5 QEDFPPRIVEHPSDLI-VSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRML 63
Query: 153 LPVGRNVLTLDRVTESEN-------YTCIAASVLGVIETSTIVKVQCKYAP 196
LP G L R+ Y C+A + LG S ++ A
Sbjct: 64 LPSG--SLFFLRIVHGRKSRPDEGVYVCVARNYLGEA-VSHDASLEVAAAA 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 52.9 bits (127), Expect = 2e-07
Identities = 17/86 (19%), Positives = 25/86 (29%), Gaps = 4/86 (4%)
Query: 110 PPPALLEVMLDSPLNLSCVAVGSPMPFVKW--RKGQNIELTPDDKLPVGRNVLTLDRVTE 167
+ E L L + C M V Q + + + V L +V
Sbjct: 251 YKESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQV 310
Query: 168 SEN--YTCIAASVLGVIETSTIVKVQ 191
+ YTC A S +KV
Sbjct: 311 EDGGVYTCYAMGETFNETLSVELKVY 336
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 52.4 bits (125), Expect = 2e-07
Identities = 20/90 (22%), Positives = 29/90 (32%), Gaps = 9/90 (10%)
Query: 103 VPPQFSIPP-PALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRNVLT 161
P+ P +S C A G+P+P +K K L + + V R+
Sbjct: 182 YGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTVTRD--- 238
Query: 162 LDRVTESENYTCIAASVLGVIETSTIVKVQ 191
Y C A S G + V V
Sbjct: 239 -----LEGTYLCRARSTQGEVTREVTVNVL 263
Score = 33.1 bits (75), Expect = 0.30
Identities = 23/105 (21%), Positives = 36/105 (34%), Gaps = 11/105 (10%)
Query: 104 PPQFSIPPPALLEVMLDSPLNLSCVAVG---SPMPFVKWRKG---QNIELTPDDKLPVGR 157
PPQ P +LEV D+ + C G V G N +T + +
Sbjct: 6 PPQLVSPR--VLEV--DTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAK 61
Query: 158 NVLTLDRVTE-SENYTCIAASVLGVIETSTIVKVQCKYAPLLTLP 201
+++ E ++ TC ET V + AP + L
Sbjct: 62 ASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILT 106
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 48.9 bits (117), Expect = 3e-07
Identities = 19/109 (17%), Positives = 40/109 (36%), Gaps = 12/109 (11%)
Query: 89 LAHAVRQVADPVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRK-GQNIEL 147
+ H + + F +V + L+ + VKW K GQ I++
Sbjct: 1 MHHHHH-HSSMDEKKSTAFQKKLEPAYQVSKGHKIRLTVE-LADHDAEVKWLKNGQEIQM 58
Query: 148 TPDDKLPV---GRNVLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
+ + + LT+ + + ++ Y C+ G + ST + V+
Sbjct: 59 SGSKYIFESIGAKRTLTISQCSLADDAAYQCVV----GGEKCSTELFVK 103
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 48.5 bits (116), Expect = 3e-07
Identities = 13/88 (14%), Positives = 26/88 (29%), Gaps = 8/88 (9%)
Query: 111 PPALLEVMLDSPLNLSCVAVGSPMPF-VKWRKGQNIELTPDDKLPV----GRNVLTLDRV 165
+ C V W G +L +K + G +L + +
Sbjct: 7 QIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFG-VRQLENSEKYEITYEDGVAILYVKDI 65
Query: 166 TESE--NYTCIAASVLGVIETSTIVKVQ 191
T+ + Y C + G + + V+
Sbjct: 66 TKLDDGTYRCKVVNDYGEDSSYAELFVK 93
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 53.3 bits (127), Expect = 3e-07
Identities = 41/311 (13%), Positives = 88/311 (28%), Gaps = 107/311 (34%)
Query: 111 PPALLEVMLD--------SPLNLSC-VAVGSPMPFVKWRKGQNIELTPDDKLPVGRNVLT 161
LL +L + NLSC + + + + ++T D ++
Sbjct: 244 ENCLL--VLLNVQNAKAWNAFNLSCKILLTT----------RFKQVT-DFLSAATTTHIS 290
Query: 162 LDRV----TESENYTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISEVTATSV 217
LD T E + + L + + P ++ + I + AT
Sbjct: 291 LDHHSMTLTPDEVKS-LLLKYLD-CRPQDLPREVLTTNPRR---LSIIAESIRDGLAT-- 343
Query: 218 RLDWTYPSETLLYYVIQYKPKAANTPYSEISGIITTYYTVRNLSPYTEYEFYIIAVNNLG 277
W +K + +++ II + ++ L P + + + L
Sbjct: 344 ---WDN-----------WK----HVNCDKLTTIIES--SLNVLEPAEYRKMF----DRL- 378
Query: 278 RGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEPETPN-GQITAKHHRRIGLV 336
+V P + + + + W + + + K H+ LV
Sbjct: 379 -------SVF----------PPSA---HIPTILLSLIWFDVIKSDVMVVVNKLHKY-SLV 417
Query: 337 ETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYGKTPGFGEQAAKHHRRIGLV 396
E ++ I+L + E HR I V
Sbjct: 418 EKQPKESTI--SIPSIYLELKVKL-----------------------ENEYALHRSI--V 450
Query: 397 ETYSLTGLYPN 407
+ Y++ + +
Sbjct: 451 DHYNIPKTFDS 461
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 48.1 bits (115), Expect = 4e-07
Identities = 17/94 (18%), Positives = 31/94 (32%), Gaps = 12/94 (12%)
Query: 104 PPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPV----GRNV 159
F+ +V + + P VKW K E+ P K + +
Sbjct: 7 GAAFAKILDPAYQVDKGGRVRFVVE-LADPKLEVKWYKN-GQEIRPSTKYIFEHKGCQRI 64
Query: 160 LTLDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
L ++ ++ Y A G + ST + V+
Sbjct: 65 LFINNCQMTDDSEYYVTA----GDEKCSTELFVR 94
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 47.8 bits (114), Expect = 5e-07
Identities = 18/100 (18%), Positives = 26/100 (26%), Gaps = 16/100 (16%)
Query: 103 VPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPV------- 155
P + L D + G+P P ++W L +
Sbjct: 3 FAPTITF----LESPTSDHHWCIPFTVKGNPKPALQWFYN-GAILNESKYICTKIHVTNH 57
Query: 156 --GRNVLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
L LD T +YT IA + G E
Sbjct: 58 TEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFM 97
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 50.5 bits (120), Expect = 1e-06
Identities = 14/106 (13%), Positives = 26/106 (24%), Gaps = 14/106 (13%)
Query: 99 PVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPF-VKWRKGQNIELTPDDKLPVGR 157
+ P S+P + + + C W K
Sbjct: 183 EAIKAIPVVSVPETSH-LLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSW 241
Query: 158 N----------VLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
+ LT+ + + C A + G +T +KV
Sbjct: 242 HRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVV 287
Score = 48.6 bits (115), Expect = 4e-06
Identities = 23/168 (13%), Positives = 47/168 (27%), Gaps = 18/168 (10%)
Query: 102 RVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRNV-L 160
R P + + L DS + C + + L D +
Sbjct: 89 RDPAKLFLVGLPLF-GKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGI 147
Query: 161 TLDRVTESE---NYTCIAASVLGVIETSTI---VKVQCKYAPLLTLPVAPLDVKISE--- 211
T+ V + C A + + V+ K P++++P +K +
Sbjct: 148 TIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFT 207
Query: 212 ----VTA--TSVRLDWTYPSETLLYYV-IQYKPKAANTPYSEISGIIT 252
+ TSV W + + +++ E +T
Sbjct: 208 VVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLT 255
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 50.5 bits (120), Expect = 1e-06
Identities = 20/92 (21%), Positives = 32/92 (34%), Gaps = 6/92 (6%)
Query: 102 RVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPF-VKWRKGQNIELTPDDKLPVGRNVL 160
PP+ SI + + L+C A +P P W + P + G L
Sbjct: 214 YYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWST--TMGPLPPFAVAQG-AQL 270
Query: 161 TLDRVTESEN--YTCIAASVLGVIETSTIVKV 190
+ V + N C + LG + V+V
Sbjct: 271 LIRPVDKPINTTLICNVTNALGARQAELTVQV 302
Score = 44.7 bits (105), Expect = 9e-05
Identities = 17/122 (13%), Positives = 37/122 (30%), Gaps = 10/122 (8%)
Query: 103 VPPQFSIPPPALLEVMLDSPLNLSCVAV-GSPMPFVKWRK-GQNIELT-----PDDKLPV 155
PQ + + ++ + CV+ G P + W + T
Sbjct: 116 AKPQNTAEVQKV-QLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVT 174
Query: 156 GRNVLTLDRVTE--SENYTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISEVT 213
++ L ++ +N TC V + Y P +++ + + +
Sbjct: 175 VTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNE 234
Query: 214 AT 215
AT
Sbjct: 235 AT 236
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 47.4 bits (113), Expect = 1e-06
Identities = 18/96 (18%), Positives = 28/96 (29%), Gaps = 8/96 (8%)
Query: 103 VPPQFSIPPPAL--LEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDD---KLPVGR 157
PP+ +P + LNL G P P V W KG L +
Sbjct: 20 EPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKG-GAPLDTSRVHVRTSDFD 78
Query: 158 NVLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
V + + S+ Y + ++V
Sbjct: 79 TVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVV 114
>1axi_B HGHBP, growth hormone receptor; complex (hormone-receptor), complex
(hormone-receptor) compl; 2.10A {Homo sapiens} SCOP:
b.1.2.1 b.1.2.1 PDB: 1a22_B 1kf9_B 1hwg_B 1hwh_B 3hhr_B
2aew_A
Length = 236
Score = 49.4 bits (117), Expect = 1e-06
Identities = 24/235 (10%), Positives = 61/235 (25%), Gaps = 33/235 (14%)
Query: 691 WLAAQSPRGEGATTPPIPVRTKQYVPGAP---PQNVSCEPLSSTSIRISWEPPP---VER 744
+ +++ + P + P+ C + W +
Sbjct: 1 FSGSEATAAILSRAPWSLQSVNPGLKTNSSGEPKFTKCRSPERETFSCHWTDEVHHGTKN 60
Query: 745 SNGHIVYYKLQFVETGRSDS---EASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDG 801
++Y + + + + +N F Y I + + D
Sbjct: 61 EGPIQLFYTRRNTQEWTQEWKECPDYVSAGENSCYFNSSFTSIAIPYCIKLTSNGGTVD- 119
Query: 802 PSSYPITIRTHEDDPSEVCPTQNDFRKNKKTN----------GSNFKGGYL--------- 842
+ + D P + T + ++ + G++
Sbjct: 120 EKCFSVDEIVQPDPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYK 179
Query: 843 --NDPMRFDVSDGGALELNVTGLQPDTIYTIQVAALTRKGD--GDRSKPETIKTP 893
N+ + + V L+ D Y ++V + R G+ S+ + P
Sbjct: 180 EVNETKWKMMDPILTTSVPVYSLKVDKEYEVRVRSKQRNSGNYGEFSEVLYVTLP 234
Score = 45.6 bits (107), Expect = 3e-05
Identities = 32/212 (15%), Positives = 66/212 (31%), Gaps = 27/212 (12%)
Query: 622 AKPRDLRAVDIQETAVTLAWSKPTHSGENI---------ISYELYWNDTYAKAKHHRRIG 672
+P+ + + + W+ H G W + + + G
Sbjct: 31 GEPKFTKCRSPERETFSCHWTDEVHHGTKNEGPIQLFYTRRNTQEWTQEWKECPDYVSAG 90
Query: 673 LVETY-SLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQNVSCEPLS-- 729
Y + + Y I L + G T + V PP ++ L+
Sbjct: 91 ENSCYFNSSFTSIAIPYCIKLTS-----NGGTVDEKCFSVDEIVQPDPPIALNWTLLNVS 145
Query: 730 ----STSIRISWEPPPV--ERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFVLDELK 783
I++ WE P + ++ Y+LQ+ E +++ ++ TS + LK
Sbjct: 146 LTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVN--ETKWKMMDPILTTSVPVYSLK 203
Query: 784 KWTEYRIWVLAGTSIGDGPS--SYPITIRTHE 813
EY + V + S + + +
Sbjct: 204 VDKEYEVRVRSKQRNSGNYGEFSEVLYVTLPQ 235
Score = 41.0 bits (95), Expect = 0.001
Identities = 19/127 (14%), Positives = 38/127 (29%), Gaps = 18/127 (14%)
Query: 442 FGEQALYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSS----- 496
F Y I L + G T + P + L+ S
Sbjct: 96 FNSSFTSIAIPYCIKLTS-----NGGTVDEKCFSVDEIVQPDPPIALNWTLLNVSLTGIH 150
Query: 497 -TMVIQWDEPETPNGQ----ITGYKVYYTQDQSLPMSAWETQVVDNNQLTTISDLTPHTI 551
+ ++W+ P + Q + Y++ Y + + W+ + L
Sbjct: 151 ADIQVRWEAPRNADIQKGWMVLEYELQYKEVNE---TKWKMMDPILTTSVPVYSLKVDKE 207
Query: 552 YTIRVQA 558
Y +RV++
Sbjct: 208 YEVRVRS 214
Score = 40.6 bits (94), Expect = 0.001
Identities = 20/176 (11%), Positives = 49/176 (27%), Gaps = 16/176 (9%)
Query: 456 WLAAQSPRGEGATTPPIPVR---TKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQI 512
+ +++ + P + P+ + R T W + +
Sbjct: 1 FSGSEATAAILSRAPWSLQSVNPGLKTNSSGEPKFTKCRSPERETFSCHWTDEVHHGTKN 60
Query: 513 -TGYKVYYTQDQSLPMSAWETQVVDNNQLT------TISDLTPHTIYTIRVQAFTSVG-P 564
+++YT+ + + + D S + Y I++ +
Sbjct: 61 EGPIQLFYTRRNTQEWTQEWKECPDYVSAGENSCYFNSSFTSIAIPYCIKLTSNGGTVDE 120
Query: 565 GPLSAPVLVKTQQGVPSQPRDLRA-VDIQETAVTLAWSKPT----HSGENIISYEL 615
S +V+ + L + + + W P G ++ YEL
Sbjct: 121 KCFSVDEIVQPDPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYEL 176
Score = 38.6 bits (89), Expect = 0.005
Identities = 14/163 (8%), Positives = 41/163 (25%), Gaps = 17/163 (10%)
Query: 213 TATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEISGIITTYYTVRNLSPYTEYEFYIIA 272
+ + ++ + P +G + Y+ S Y + +
Sbjct: 54 VHHGTKNEGPIQLFYTRRNTQEWTQEWKECPDYVSAGENSCYFNSSFTSIAIPYCIKLTS 113
Query: 273 VNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMV-IQWDEPETPN---GQITAK 328
S I + + V + ++W+ P + G + +
Sbjct: 114 NGGTVDEKCFSVDEIVQPDPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLE 173
Query: 329 HHRRIGLVET-------------YSLTGLYPNTLYYIWLAAQS 358
+ + V + L + Y + + ++
Sbjct: 174 YELQYKEVNETKWKMMDPILTTSVPVYSLKVDKEYEVRVRSKQ 216
Score = 35.2 bits (80), Expect = 0.074
Identities = 28/201 (13%), Positives = 52/201 (25%), Gaps = 40/201 (19%)
Query: 102 RVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPV------ 155
V P P C + W + + + +
Sbjct: 20 SVNPGLKTNSSG-------EPKFTKCRSPERETFSCHWTDEVHHGTKNEGPIQLFYTRRN 72
Query: 156 ----GRNVLTLDRVTESENYTCIAASVLGVIETSTIVKVQ-----------CKYAPLLTL 200
+ + +C S I +K+ +
Sbjct: 73 TQEWTQEWKECPDYVSAGENSCYFNSSFTSIAIPYCIKLTSNGGTVDEKCFSVDEIVQPD 132
Query: 201 PVAPLDVKISEVTAT----SVRLDWTYPSET-------LLYYVIQYKPKAANTPYSEISG 249
P L+ + V+ T +++ W P +L Y +QYK + +
Sbjct: 133 PPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNETK-WKMMDP 191
Query: 250 IITTYYTVRNLSPYTEYEFYI 270
I+TT V +L EYE +
Sbjct: 192 ILTTSVPVYSLKVDKEYEVRV 212
Score = 31.7 bits (71), Expect = 0.94
Identities = 10/47 (21%), Positives = 15/47 (31%)
Query: 276 LGRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWDEPETPN 322
L R P S +V +T P+ + R T W +
Sbjct: 11 LSRAPWSLQSVNPGLKTNSSGEPKFTKCRSPERETFSCHWTDEVHHG 57
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.4 bits (120), Expect = 2e-06
Identities = 91/537 (16%), Positives = 160/537 (29%), Gaps = 169/537 (31%)
Query: 457 LAAQSPR----GEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSST-MVIQWDEPETPN-- 509
+ A S R G+ + V T + + ++ + L T DEP TP
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAEL 60
Query: 510 -GQITGYKVYYTQDQSLP---------MSAWETQVVDNN-------QLTTISDLTPHTIY 552
G+ GY + + ++ +E ++ N +L +D T
Sbjct: 61 VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTK 120
Query: 553 TIRVQAFTSVGPGPLSAPVLVKTQQGVPSQPRDLRAVDIQETAVTLAWSKPTHSGE-NII 611
+ ++ + ++A ++ K S RAV + + G+ N
Sbjct: 121 EL-IKNY-------ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF-----GGQGNTD 167
Query: 612 SY-----ELYWNDTYAKP--RDLRAVDIQETAVTL---------------------AW-S 642
Y +LY TY DL I+ +A TL W
Sbjct: 168 DYFEELRDLY--QTY-HVLVGDL----IKFSAETLSELIRTTLDAEKVFTQGLNILEWLE 220
Query: 643 KP--THSGENIISYELYWNDTYAKAKHHRRIGLVET--YSLT----GLYPNTLYYIWLAA 694
P T + ++S + IG+++ Y +T G P L L
Sbjct: 221 NPSNTPDKDYLLSIPISCP----------LIGVIQLAHYVVTAKLLGFTPGELRSY-LKG 269
Query: 695 QSPRGEG---------ATTPP---------------IPVRTKQYVPGA--PPQNV--SCE 726
+ +G + I VR + P PP + S E
Sbjct: 270 ATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLE 329
Query: 727 -----P---LSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKN-QTSF 777
P LS +++ V ++N H+ + + I +L N +
Sbjct: 330 NNEGVPSPMLSISNLTQEQVQDYVNKTNSHL-----------PAGKQVEI-SLVNGAKNL 377
Query: 778 V-------LDELKKWTEYRIWVLAGTSIGDGPSS---------Y-PITIRTHEDDPSE-V 819
V L L + +G P S + P+ H S +
Sbjct: 378 VVSGPPQSLYGLNLTLR-KAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFH----SHLL 432
Query: 820 CPTQNDFRKNKKTNGSNFKGGYLNDPMRFDVSDGGALELNVTGLQP---DTIYTIQV 873
P + K+ N +F + P+ +D DG L + + D I + V
Sbjct: 433 VPASDLINKDLVKNNVSFNAKDIQIPV-YDTFDGSDLRVLSGSISERIVDCIIRLPV 488
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 46.1 bits (109), Expect = 3e-06
Identities = 19/105 (18%), Positives = 36/105 (34%), Gaps = 17/105 (16%)
Query: 104 PPQFSIPPPALLEVMLDSPLNLSCVAVGSPM---PFVKWRKGQNIELTP----------- 149
P + P EV + + S G+ + P VKW KG+ ++L+
Sbjct: 3 PIGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDS 62
Query: 150 -DDKLPVGRNVLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
D V L + + +Y C ++ ++ + V
Sbjct: 63 YDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVH 107
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 48.5 bits (115), Expect = 3e-06
Identities = 17/97 (17%), Positives = 29/97 (29%), Gaps = 8/97 (8%)
Query: 103 VPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRNVLTL 162
P I L+ + S L+C A G P V W + L+ + L
Sbjct: 114 NAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKL 173
Query: 163 DRVT--------ESENYTCIAASVLGVIETSTIVKVQ 191
VT +E + C + + + +
Sbjct: 174 FNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIP 210
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 46.5 bits (110), Expect = 3e-06
Identities = 24/125 (19%), Positives = 40/125 (32%), Gaps = 17/125 (13%)
Query: 111 PPALLEVMLDSPLNLSCVAV---GSPMPFVKWRK-GQNIELTPDDKLPVGRNV------- 159
PA +++ ++ C+ G P P ++W G + T
Sbjct: 3 MPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRH 62
Query: 160 --LTLDRVTESE--NYTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISEVTAT 215
L L++ T NYT +AA+ G S + P P P+ S
Sbjct: 63 GCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFM--DNPFEFNPEDPIPDTNSTSGDP 120
Query: 216 SVRLD 220
+ D
Sbjct: 121 VEKKD 125
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 47.7 bits (113), Expect = 3e-06
Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 3/98 (3%)
Query: 102 RVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGR-NVL 160
+V + +LEV + L+C A G P+ V W+ T + P G V
Sbjct: 100 KVKASYMRIDTRILEVPGTGEVQLTCQARGYPLAEVSWQNVSVPANTSHIRTPEGLYQVT 159
Query: 161 TLDRVTES--ENYTCIAASVLGVIETSTIVKVQCKYAP 196
++ R+ N++C+ + TS I+ + P
Sbjct: 160 SVLRLKPQPSRNFSCMFWNAHMKELTSAIIDPLSRMEP 197
Score = 38.1 bits (88), Expect = 0.005
Identities = 15/97 (15%), Positives = 34/97 (35%), Gaps = 14/97 (14%)
Query: 109 IPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPD------------DKLPVG 156
P + V + S ++L C ++ + ++ D ++LP+G
Sbjct: 6 TAPKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLG 65
Query: 157 RNVLTLDRVTESEN--YTCIAASVLGVIETSTIVKVQ 191
+ + + V ++ Y C+ VKV+
Sbjct: 66 KALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVK 102
>3tgx_A Interleukin-21 receptor; class I cytokine, class I cytokine
receptor, sugarbridge, fibronectine domain, signaling,
cytokine-cytokine receptor; HET: MAN FUL NAG BMA FUC;
2.80A {Homo sapiens}
Length = 219
Score = 47.8 bits (113), Expect = 4e-06
Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 16/144 (11%)
Query: 688 YYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNG 747
+ G + + + APP +V+ S +ISW + +
Sbjct: 73 DIFSVQITDQSG-QYSQECGSFLLAESIKPAPPFDVT--VTFSGQYQISWRSDYEDPAFY 129
Query: 748 HIVY---YKLQFVETGRSDSEASIVTL----KNQTSFVLDELKKWTEYRIWVLAGTSIGD 800
+ Y+LQ+ G + + L S + E +K + Y + V AG G
Sbjct: 130 MLKGKLQYELQYRNRGDPWAVSPRRKLISVDSRSVSLLPLEFRKDSSYELQVRAGPMPGS 189
Query: 801 GPS------SYPITIRTHEDDPSE 818
S P+ +T ++ E
Sbjct: 190 SYQGTWSEWSDPVIFQTQSEELKE 213
Score = 44.4 bits (104), Expect = 7e-05
Identities = 20/148 (13%), Positives = 42/148 (28%), Gaps = 17/148 (11%)
Query: 453 YYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQI 512
+ G+ + + + +P P DV V S I W
Sbjct: 73 DIFSVQITDQSGQYSQECGSFLLAESIKP-APPFDVTVTF--SGQYQISWRSDYEDPAFY 129
Query: 513 TG-----YKVYYTQDQSLPMSAWETQVVDNNQLTT---ISDLTPHTIYTIRVQAFTSVGP 564
Y++ Y + +++ + + + + Y ++V+A G
Sbjct: 130 MLKGKLQYELQYRNRGDPWAVSPRRKLISVDSRSVSLLPLEFRKDSSYELQVRAGPMPGS 189
Query: 565 GPL------SAPVLVKTQQGVPSQPRDL 586
S PV+ +TQ +
Sbjct: 190 SYQGTWSEWSDPVIFQTQSEELKEHHHH 217
Score = 38.6 bits (89), Expect = 0.004
Identities = 23/217 (10%), Positives = 57/217 (26%), Gaps = 39/217 (17%)
Query: 721 QNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRS------DSEASIVTLKNQ 774
++ C ++ E + S + + + S +
Sbjct: 2 PDLVCYTDYLQTVICILEMWNLHPSTLTLTWQDQYEELKDEATSCSLHRSAHNATHATYT 61
Query: 775 TSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIRTHE----DDPSEVCPTQ-NDFRKN 829
+ + + + T S + E P +V T ++ +
Sbjct: 62 CHMDVFHFMADDIFSVQI---TDQSGQYSQECGSFLLAESIKPAPPFDVTVTFSGQYQIS 118
Query: 830 KKTNGSNFKGGYLNDPMRFDV-------------------SDGGALELNVTGLQPDTIYT 870
+++ + L +++++ D ++ L + D+ Y
Sbjct: 119 WRSDYEDPAFYMLKGKLQYELQYRNRGDPWAVSPRRKLISVDSRSVSLLPLEFRKDSSYE 178
Query: 871 IQVAALTRKGDGDR------SKPETIKTPGGVPNRPH 901
+QV A G + S P +T H
Sbjct: 179 LQVRAGPMPGSSYQGTWSEWSDPVIFQTQSEELKEHH 215
Score = 35.5 bits (81), Expect = 0.053
Identities = 20/114 (17%), Positives = 31/114 (27%), Gaps = 21/114 (18%)
Query: 201 PVAPLDVKISEVTATSVRLDWTYPSE--------TLLYYVIQYKPKAANTPYSEISGII- 251
P P DV ++ + W E L Y +QY+ + S +I
Sbjct: 101 PAPPFDVTVTFSGQYQIS--WRSDYEDPAFYMLKGKLQYELQYRNRGDPWAVSPRRKLIS 158
Query: 252 ----TTYYTVRNLSPYTEYEFYIIAVNNLGRGPP------SSPAVITTGETEPG 295
+ + YE + A G S P + T E
Sbjct: 159 VDSRSVSLLPLEFRKDSSYELQVRAGPMPGSSYQGTWSEWSDPVIFQTQSEELK 212
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 45.1 bits (107), Expect = 4e-06
Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 14/98 (14%)
Query: 104 PPQFSIPPPAL--LEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPV----GR 157
F+ PA ++ + LSC V V W K +L+ K+ V
Sbjct: 8 KVVFAKEQPAHREVQAEAGASATLSCE-VAQAQTEVTWYKD-GKKLSSSSKVRVEAVGCT 65
Query: 158 NVLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQCK 193
L + + ++E Y+C A G + S ++V +
Sbjct: 66 RRLVVQQAGQAEAGEYSCEA----GGQQLSFRLQVAGQ 99
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 48.2 bits (114), Expect = 5e-06
Identities = 12/102 (11%), Positives = 31/102 (30%), Gaps = 11/102 (10%)
Query: 100 VRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRK-GQNIELTPD-------D 151
++ S+ V + L C+ +G+ + +W + + D
Sbjct: 177 LQVSSINVSVNAVQT-VVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLD 235
Query: 152 KLPVGRNVLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
R++L + + YTC + + + +
Sbjct: 236 MPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINIT 277
Score = 43.2 bits (101), Expect = 2e-04
Identities = 20/160 (12%), Positives = 45/160 (28%), Gaps = 16/160 (10%)
Query: 99 PVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRN 158
P V + + + + + + C P V + + P +
Sbjct: 89 PDPTVGFLPNDAEELFIFLTEITEITIPCRVTD-PQLVVTLHEKKGDVALPV----PYDH 143
Query: 159 VLTLDRVTESENYTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISE------- 211
+ E +Y C +++ + + + + + V + + +
Sbjct: 144 QRGFSGIFEDRSYICKTTIGDREVDSDAYYVYRLQVSS-INVSVNAVQTVVRQGENITLM 202
Query: 212 --VTATS-VRLDWTYPSETLLYYVIQYKPKAANTPYSEIS 248
V V +WTYP + V + PY S
Sbjct: 203 CIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRS 242
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 45.0 bits (107), Expect = 6e-06
Identities = 25/99 (25%), Positives = 33/99 (33%), Gaps = 13/99 (13%)
Query: 99 PVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPV--- 155
P +F L EV+ L CV P VKW G N L P DK +
Sbjct: 3 SGSSGPVRFQEALKDL-EVLEGGAATLRCVLSSVAAP-VKWCYG-NNVLRPGDKYSLRQE 59
Query: 156 -GRNVLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
L + + + Y+C G TS + V
Sbjct: 60 GAMLELVVRNLRPQDSGRYSCSF----GDQTTSATLTVT 94
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 46.9 bits (111), Expect = 6e-06
Identities = 14/95 (14%), Positives = 30/95 (31%), Gaps = 10/95 (10%)
Query: 102 RVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTP---DDKLPVGRN 158
P S+ + S L ++C P P V+W + +E P + + ++
Sbjct: 102 VKPLTLSVHSE-RSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKD 160
Query: 159 ----VLTLDRVTESE--NYTCIAASVLGVIETSTI 187
V + + TC+ + +
Sbjct: 161 GSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHGVYV 195
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 44.6 bits (106), Expect = 7e-06
Identities = 21/96 (21%), Positives = 33/96 (34%), Gaps = 13/96 (13%)
Query: 104 PPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPV----GRNV 159
F L+V +C P V WRKG +EL K
Sbjct: 8 ANCF-TEELTNLQVEEKGTAVFTCK-TEHPAATVTWRKG-LLELRASGKHQPSQEGLTLR 64
Query: 160 LTLDRVTESE--NYTCIAASVLGVIETSTIVKVQCK 193
LT+ + +++ YTC G ++ + VQ +
Sbjct: 65 LTISALEKADSDTYTCDI----GQAQSRAQLLVQGR 96
>1uc6_A CNTF receptor, ciliary neurotrophic factor receptor alpha;
cytokine, leukemia inhibitory factor, cytokine receptor;
NMR {Homo sapiens} SCOP: b.1.2.1
Length = 109
Score = 44.6 bits (105), Expect = 9e-06
Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 7/102 (6%)
Query: 719 PPQNVSCEPL--SSTSIRISWEPPP-VERSNGHIVYYKLQFVETGRSDSEASIVTLKNQT 775
PP+NV P+ + + ++W+ P + + L++ + ++ N T
Sbjct: 10 PPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHVELS--NGT 67
Query: 776 SFVLDELKKWTEYRIWVLAGTSIGDGPS--SYPITIRTHEDD 815
+ + + EY I V A + S S ++
Sbjct: 68 AHTITDAYAGKEYIIQVAAKDNEIGTWSDWSVAAHATPWTEE 109
Score = 41.1 bits (96), Expect = 1e-04
Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 8/79 (10%)
Query: 485 PRDVQVRPL--SSSTMVIQWDEPET---PNGQITGYKVYYTQDQSLPMSAWETQVVDNNQ 539
P +V RP+ + + + W P T P + + Y W+ + N
Sbjct: 11 PENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLIL---DQWQHVELSNGT 67
Query: 540 LTTISDLTPHTIYTIRVQA 558
TI+D Y I+V A
Sbjct: 68 AHTITDAYAGKEYIIQVAA 86
Score = 38.4 bits (89), Expect = 0.001
Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 10/103 (9%)
Query: 199 TLPVAPLDVKISEVTATSVRLDWTYPSET------LLYYVIQYKPKAANTPYSEISGIIT 252
P + + + + W PS L + ++Y+P + + +
Sbjct: 8 PDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQ-WQHVELSNG 66
Query: 253 TYYTVRNLSPYTEYEFYIIAVNNLGRGPPS--SPAVITTGETE 293
T +T+ + EY + A +N G S S A T TE
Sbjct: 67 TAHTITDAYAGKEYIIQVAAKDN-EIGTWSDWSVAAHATPWTE 108
Score = 29.2 bits (65), Expect = 1.9
Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 5/77 (6%)
Query: 624 PRDLRA--VDIQETAVTLAWSKPTHSGEN---IISYELYWNDTYAKAKHHRRIGLVETYS 678
P ++ A V + + W P+ + + + L + H + ++
Sbjct: 11 PENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHVELSNGTAHT 70
Query: 679 LTGLYPNTLYYIWLAAQ 695
+T Y Y I +AA+
Sbjct: 71 ITDAYAGKEYIIQVAAK 87
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding, cell
adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 43.9 bits (104), Expect = 1e-05
Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 13/99 (13%)
Query: 99 PVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPV--- 155
P ++ F P +EV SP V+W++G +++ +K +
Sbjct: 3 PGKKPVSAF-SKKPRSVEVAAGSPAVFEAE-TERAGVKVRWQRG-GSDISASNKYGLATE 59
Query: 156 -GRNVLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
R+ LT+ V ++ +Y IA G + +KV
Sbjct: 60 GTRHTLTVREVGPADQGSYAVIA----GSSKVKFDLKVI 94
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function;
1.80A {Homo sapiens} PDB: 3ch8_A
Length = 195
Score = 45.7 bits (107), Expect = 2e-05
Identities = 21/108 (19%), Positives = 39/108 (36%), Gaps = 5/108 (4%)
Query: 703 TTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFVETGRS 762
+ + P N+ + TS+ ISW+ + YY++ + ETG +
Sbjct: 90 IRVRVEKDGGSGGVSSVPTNLEVVAATPTSLLISWDASY-----YGVSYYRITYGETGGN 144
Query: 763 DSEASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSIGDGPSSYPITIR 810
+ ++ + LK +Y I V A + PI+I
Sbjct: 145 SPVQEFTVPYSSSTATISGLKPGVDYTITVYAYSDYYGSHHYSPISIN 192
Score = 41.5 bits (96), Expect = 5e-04
Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 1/80 (1%)
Query: 210 SEVTATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEISGIIT-TYYTVRNLSPYTEYEF 268
T TS+ + W + YY I Y N+P E + + + T+ L P +Y
Sbjct: 113 VAATPTSLLISWDASYYGVSYYRITYGETGGNSPVQEFTVPYSSSTATISGLKPGVDYTI 172
Query: 269 YIIAVNNLGRGPPSSPAVIT 288
+ A ++ SP I
Sbjct: 173 TVYAYSDYYGSHHYSPISIN 192
Score = 34.1 bits (77), Expect = 0.11
Identities = 21/108 (19%), Positives = 44/108 (40%), Gaps = 6/108 (5%)
Query: 468 TTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKV-YYTQDQSLP 526
+ + P +++V + ++++I WD ++ Y++ Y + P
Sbjct: 90 IRVRVEKDGGSGGVSSVPTNLEVVAATPTSLLISWDASYYG---VSYYRITYGETGGNSP 146
Query: 527 MSAWETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVK 574
+ E V ++ TIS L P YTI V A++ +P+ +
Sbjct: 147 VQ--EFTVPYSSSTATISGLKPGVDYTITVYAYSDYYGSHHYSPISIN 192
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 45.4 bits (107), Expect = 2e-05
Identities = 15/103 (14%), Positives = 29/103 (28%), Gaps = 14/103 (13%)
Query: 102 RVPPQFSIPPPALLEVMLDSPLNLSCVAVGSP-MPFVKWRKGQNIELTPDDKLPVGR--- 157
PP+ + + L C + P + W K + E R
Sbjct: 81 HGPPRVKAVKSSE-HINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFV 139
Query: 158 ------NVLTLDRVTESE---NYTCIAASVLGVIETSTIVKVQ 191
+ L ++ + Y C S G + ++V+
Sbjct: 140 SSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVR 182
Score = 37.3 bits (86), Expect = 0.010
Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 8/63 (12%)
Query: 117 VMLDSPLNLSCVAVGSPMP--FVKWRKGQNIELTPDDKLPVGRNVLTLDRVTESE--NYT 172
L S + L+C S +W KG + L D + ++ + Y+
Sbjct: 10 EDLGSKILLTCSLNDSATEVTGHRWLKG-GVVLKED---ALPGQKTEFKVDSDDQWGEYS 65
Query: 173 CIA 175
C+
Sbjct: 66 CVF 68
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 44.4 bits (104), Expect = 2e-05
Identities = 25/135 (18%), Positives = 43/135 (31%), Gaps = 39/135 (28%)
Query: 94 RQVADPVRRVPPQFSIPPPAL----LEVMLDSPLNLSCVAVGSPMPFVKWRKG------- 142
R+ PP+ + P + V+ + L L G P P V W+K
Sbjct: 4 HHHHSS-RQEPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKA 62
Query: 143 -------------QNIELTPDDKLPV------------GRNVLTLDRVTESE--NYTCIA 175
+ E D KL R++ T++ + + YT
Sbjct: 63 PARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTV 122
Query: 176 ASVLGVIETSTIVKV 190
+ +G + + VKV
Sbjct: 123 KNPVGEDQVNLTVKV 137
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 43.8 bits (103), Expect = 2e-05
Identities = 16/105 (15%), Positives = 31/105 (29%), Gaps = 18/105 (17%)
Query: 104 PPQFSIPPPALLEVMLDSPLNLSCVAVGSPM---PFVKWRKGQNIELTP----------- 149
F I P V + + + P +KW KG+ ++L
Sbjct: 7 GILF-IEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKET 65
Query: 150 -DDKLPVGRNVLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
+ V + + + ++ NY C S ++V
Sbjct: 66 FERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVH 110
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 42.4 bits (100), Expect = 4e-05
Identities = 10/100 (10%), Positives = 26/100 (26%), Gaps = 13/100 (13%)
Query: 104 PPQFSIPPPALLEVMLDSPLNLSC-VAVGSPMPFVKWRKGQNIELTPDDKLPV----GRN 158
+EV+ + C ++ S W G + + +
Sbjct: 8 HVGI-TKRLKTMEVLEGESCSFECVLSHESASDPAMWTVG-GKTVGSSSRFQATRQGRKY 65
Query: 159 VLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQCKYAP 196
+L + S+ + + + V+ + P
Sbjct: 66 ILVVREAAPSDAGEVVFSV----RGLTSKASLIVRERSGP 101
>1oww_A FN, fibronectin first type III module, CIG; fibronectin type III
module, structural protein; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 98
Score = 42.5 bits (99), Expect = 4e-05
Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 204 PLDVKISEVTA--TSVRLDWTYPSET-LLYYVIQYKPKAANTPYSE--ISGIITTYYTVR 258
P++V I+E + S + W P + + Y+++++PK + + E I G + +Y T++
Sbjct: 8 PVEVFITETPSQPNSHPIQWNAPQPSHISKYILRWRPKNSVGRWKEATIPGHLNSY-TIK 66
Query: 259 NLSPYTEYEFYIIAVNNLGRG 279
L P YE +I++ G
Sbjct: 67 GLKPGVVYEGQLISIQQYGHQ 87
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 45.1 bits (105), Expect = 6e-05
Identities = 19/143 (13%), Positives = 45/143 (31%), Gaps = 5/143 (3%)
Query: 428 PIPVRTKQYGKTPGFGEQALYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRD 487
+ +Y I + + + P++
Sbjct: 159 RGDNKEYEYSVECQEDSACPAAEESLPIEVMVDAVHKLKYEQYTSSFFIRDIIKPDPPKN 218
Query: 488 VQVRPLSSSTMV-IQWDEPETPNGQITGYKV-YYTQDQSLPMSAWETQVVDNNQLTTISD 545
+Q++PL +S V + W+ P+T + + + + + Q Q + +V + T +
Sbjct: 219 LQLKPLKNSRQVEVSWEYPDTWSTPHSYFSLTFCVQVQGKSKREKKDRVFTD---KTSAT 275
Query: 546 LTPHTIYTIRVQAFTSVGPGPLS 568
+ +I V+A S
Sbjct: 276 VICRKNASISVRAQDRYYSSSWS 298
Score = 38.2 bits (87), Expect = 0.010
Identities = 21/125 (16%), Positives = 38/125 (30%), Gaps = 8/125 (6%)
Query: 683 YPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQNVSCEPLS-STSIRISWEPPP 741
I + + + + PP+N+ +PL S + +SWE P
Sbjct: 179 AAEESLPIEVMVDAVHKLKYEQYTSSFFIRDIIKPDPPKNLQLKPLKNSRQVEVSWEYPD 238
Query: 742 V--ERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFVLDELKKWTEYRIWVLAGTSIG 799
+ + + +Q G+S E ++TS + I V A
Sbjct: 239 TWSTPHSYFSLTFCVQV--QGKSKREKKDRVFTDKTSA---TVICRKNASISVRAQDRYY 293
Query: 800 DGPSS 804
S
Sbjct: 294 SSSWS 298
Score = 35.5 bits (80), Expect = 0.058
Identities = 16/121 (13%), Positives = 37/121 (30%), Gaps = 17/121 (14%)
Query: 170 NYTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISEVTATS-VRLDWTYPSET- 227
A L + ++ ++ + P P ++++ + + V + W YP
Sbjct: 187 EVMVDAVHKLKYEQYTSSFFIR-----DIIKPDPPKNLQLKPLKNSRQVEVSWEYPDTWS 241
Query: 228 ------LLYYVIQYKPKAANTPYSEISGIITTYYTVRNLSPYTEYEFYIIAVNNLGRGPP 281
L + +Q + K+ E + T T + + A +
Sbjct: 242 TPHSYFSLTFCVQVQGKSK----REKKDRVFTDKTSATVICRKNASISVRAQDRYYSSSW 297
Query: 282 S 282
S
Sbjct: 298 S 298
Score = 30.5 bits (67), Expect = 2.6
Identities = 29/299 (9%), Positives = 73/299 (24%), Gaps = 48/299 (16%)
Query: 104 PPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRNVLTLD 163
+ + + + L+C + W Q+ E+ LT+
Sbjct: 6 KDVYVVELDWYPDAP-GEMVVLTCD--TPEEDGITWTLDQSSEVLGS------GKTLTIQ 56
Query: 164 RVTESE--NYTCIAA------SVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISEVTAT 215
+ YTC S+L + + + ++ +
Sbjct: 57 VKEFGDAGQYTCHKGGEVLSHSLLLLHKKEDGIWSTDILKDQKEPKNKTFLRCEAKNYSG 116
Query: 216 SVRLDWTYPSETLLYYVIQYK-----------------PKAANTPYSEISGIITTYYTVR 258
W T L + ++ + E +
Sbjct: 117 RFTCWWLTTISTDLTFSVKSSRGSSDPQGVTCGAATLSAERVRGDNKEYEYSVECQEDSA 176
Query: 259 NLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMV-IQWDE 317
+ ++ + + P+++Q++PL +S V + W+
Sbjct: 177 CPAAEESLPIEVMVDAVHKLKYEQYTSSFFIRDIIKPDPPKNLQLKPLKNSRQVEVSWEY 236
Query: 318 PET---PNGQITAKHHRRI----------GLVETYSLTGLYPNTLYYIWLAAQSPRGEG 363
P+T P+ + ++ + + + I + AQ
Sbjct: 237 PDTWSTPHSYFSLTFCVQVQGKSKREKKDRVFTDKTSATVICRKNASISVRAQDRYYSS 295
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 41.5 bits (98), Expect = 8e-05
Identities = 17/99 (17%), Positives = 31/99 (31%), Gaps = 13/99 (13%)
Query: 104 PPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPV----GRNV 159
P P V + L C + P V W K + K V +
Sbjct: 8 PAAIIKPLEDQ-WVAPGEDVELRCELSRAGTP-VHWLKD-RKAIRKSQKYDVVCEGTMAM 64
Query: 160 LTLDRVTESE--NYTCIAASVLGVIETSTIVKVQCKYAP 196
L + + + YTC + +++ + V+ K +
Sbjct: 65 LVIRGASLKDAGEYTCEVEAS----KSTASLHVEEKASG 99
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 41.6 bits (98), Expect = 8e-05
Identities = 18/100 (18%), Positives = 32/100 (32%), Gaps = 17/100 (17%)
Query: 104 PPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPV-------- 155
P P +V + + ++ V V W K +ELT +D
Sbjct: 8 PVLIVTPLEDQ-QVFVGDRVEMAVE-VSEEGAQVMWMKN-GVELTREDSFKARYRFKKDG 64
Query: 156 GRNVLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQCK 193
R++L V + + Y I + + V+ K
Sbjct: 65 KRHILIFSDVVQEDRGRYQVITNGG----QCEAELIVEEK 100
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 41.3 bits (97), Expect = 1e-04
Identities = 17/97 (17%), Positives = 28/97 (28%), Gaps = 14/97 (14%)
Query: 103 VPPQFSIPPPAL--LEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPV----G 156
+ + P + + + L+C + P V+W K E+ L +
Sbjct: 9 DVSSWIVYPSGKVYVAAVRLERVVLTCE-LCRPWAEVRWTKD-GEEVVESPALLLQKEDT 66
Query: 157 RNVLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
L L V + Y C S V V
Sbjct: 67 VRRLVLPAVQLEDSGEYLCEI----DDESASFTVTVT 99
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 44.4 bits (105), Expect = 1e-04
Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 7/93 (7%)
Query: 104 PPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPD---DKLPVGRN-V 159
+ PPA L V L C A + + V W +T ++ V +
Sbjct: 340 YAPVIVEPPADLNVTEGMAAELKCRA-STSLTSVSWITPNGTVMTHGAYKVRIAVLSDGT 398
Query: 160 LTLDRVTESEN--YTCIAASVLGVIETSTIVKV 190
L VT + YTC+ ++ +G S + V
Sbjct: 399 LNFTNVTVQDTGMYTCMVSNSVGNTTASATLNV 431
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 40.8 bits (96), Expect = 2e-04
Identities = 17/100 (17%), Positives = 34/100 (34%), Gaps = 13/100 (13%)
Query: 104 PPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRK-GQNIELTPDDKLPV----GRN 158
+ L C V VKW K G+ I P + + ++
Sbjct: 7 GIMV-TKQLEDTTAYCGERVELECE-VSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKH 64
Query: 159 VLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQCKYAP 196
+L ++ T+++ Y+ + ++S + V K P
Sbjct: 65 ILIIEGATKADAAEYSVMTTGG----QSSAKLSVDLKSGP 100
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 43.6 bits (103), Expect = 2e-04
Identities = 22/94 (23%), Positives = 32/94 (34%), Gaps = 8/94 (8%)
Query: 104 PPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTP---DDKLPVGRN-V 159
F + P L + L C PM VKW L+ ++ V +
Sbjct: 351 SAPFIMDAPRDLNISEGRMAELKCRT--PPMSSVKWLLPNGTVLSHASRHPRISVLNDGT 408
Query: 160 LTLDRVTESEN--YTCIAASVLGVIETSTIVKVQ 191
L V S+ YTC+ +V G S + V
Sbjct: 409 LNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVS 442
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 40.0 bits (94), Expect = 3e-04
Identities = 12/94 (12%), Positives = 30/94 (31%), Gaps = 13/94 (13%)
Query: 104 PPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPV----GRNV 159
+ P + EV + + + P +W+ L + +++
Sbjct: 5 LIEVEKPLYGV-EVFVGETAHFEIE-LSEPDVHGQWKLK-GQPLAASPDCEIIEDGKKHI 61
Query: 160 LTLDRVTESEN--YTCIAASVLGVIETSTIVKVQ 191
L L + AA+ +++ +KV+
Sbjct: 62 LILHNCQLGMTGEVSFQAANT----KSAANLKVK 91
>3dlq_R Interleukin-22 receptor subunit alpha-1; cytokine-receptor complex,
fibronectin-III, cytokine, glycoprotein, polymorphism,
secreted, membrane; 1.90A {Homo sapiens} PDB: 3dgc_R*
Length = 211
Score = 42.4 bits (99), Expect = 3e-04
Identities = 31/180 (17%), Positives = 56/180 (31%), Gaps = 18/180 (10%)
Query: 622 AKPRDLRAVDIQETAVTLAWSKPTHSGENI---ISYELYWNDTYAKAKHHRRIGLVETY- 677
+ ++ L W + I Y+ Y + K +RI
Sbjct: 6 DLLQHVK-FQSSNFENILTWDSGPEGTPDTVYSIEYKTYGERDWVAKKGCQRI--TRKSC 62
Query: 678 --SLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSIRI 735
++ LYY + A S G AT + Q+ PP +V+C SI++
Sbjct: 63 NLTVETGNLTELYYARVTAVSAGGRSATKMTDRFSSLQHTTLKPP-DVTCIS-KVRSIQM 120
Query: 736 SWEPPPVERSNG-------HIVYYKLQFVETGRSDSEASIVTLKNQTSFVLDELKKWTEY 788
P P G +++ L + + + + Q + L TE+
Sbjct: 121 IVHPTPTPIRAGDGHRLTLEDIFHDLFYHLELQVNRTYQMHLGGKQREYEFFGLTPDTEF 180
Score = 30.8 bits (69), Expect = 1.3
Identities = 31/231 (13%), Positives = 61/231 (26%), Gaps = 41/231 (17%)
Query: 480 EPGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQ 539
+P + V+ + + ++ WD T Y + Y ++ W +
Sbjct: 3 DPSDLLQHVKFQSSNFEN-ILTWD-SGPEGTPDTVYSIEY---KTYGERDWVAKKGCQRI 57
Query: 540 LTTISDLT-----PHTIYTIRVQAFTSVGPGPLSAPVLVKTQQGVPSQPRDLRAVDIQET 594
+LT +Y RV A ++ G + Q +P D+ +
Sbjct: 58 TRKSCNLTVETGNLTELYYARVTAVSAGGRSATKMTDRFSSLQHTTLKPPDVT-CISKVR 116
Query: 595 AVTLAWSKPTHSGENIISYELYWNDTYAKPRDLRAVDIQETAVTLAWSKPTHSGENIISY 654
++ + + L D + + + Y
Sbjct: 117 SIQMIVHPTPTPIRAGDGHRLTLEDIF----------------------------HDLFY 148
Query: 655 ELYWNDTYAKAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTP 705
L H G Y GL P+T + + P + P
Sbjct: 149 HLELQVNRTYQMHLG--GKQREYEFFGLTPDTEFLGTIMILVPTWAKESAP 197
Score = 30.8 bits (69), Expect = 1.5
Identities = 21/126 (16%), Positives = 34/126 (26%), Gaps = 10/126 (7%)
Query: 447 LYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMVIQWDEPE 506
LYY + A S G AT + Q+ P DV S +I
Sbjct: 69 GNLTELYYARVTAVSAGGRSATKMTDRFSSLQHTTLKPP-DVTCISKVRSIQMI-VHPTP 126
Query: 507 TPNGQITGYKVYYTQDQSLPM--------SAWETQVVDNNQLTTISDLTPHTIYTIRVQA 558
TP G+++ ++ + + LTP T + +
Sbjct: 127 TPIRAGDGHRLTLEDIFHDLFYHLELQVNRTYQMHLGGKQREYEFFGLTPDTEFLGTIMI 186
Query: 559 FTSVGP 564
Sbjct: 187 LVPTWA 192
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 42.6 bits (99), Expect = 3e-04
Identities = 15/116 (12%), Positives = 31/116 (26%), Gaps = 29/116 (25%)
Query: 104 PPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKG--------QNIELTPDDKLPV 155
+ +++V + + ++C V W G +K
Sbjct: 135 SNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQF 194
Query: 156 GR----------------NVLTLDRVTESE--NYTCIAASVLGVIETS---TIVKV 190
G L + ++ C A+ G ++ TI+KV
Sbjct: 195 GITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTILKV 250
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 41.2 bits (96), Expect = 5e-04
Identities = 19/106 (17%), Positives = 41/106 (38%), Gaps = 6/106 (5%)
Query: 94 RQVADPVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRK-GQNIELTPDDK 152
V V + Q + V + L+C++ ++W Q+++LT
Sbjct: 100 ATVRFHVHQPVTQPFLQVTNT-TVKELDSVTLTCLS-NDIGANIQWLFNSQSLQLTERMT 157
Query: 153 LPVGRNVLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQCKYAP 196
L ++L +D + + Y C ++ + V S +K+ + P
Sbjct: 158 LSQNNSILRIDPIKREDAGEYQCEISNPVSV-RRSNSIKLDIIFDP 202
Score = 31.2 bits (70), Expect = 1.1
Identities = 19/118 (16%), Positives = 30/118 (25%), Gaps = 25/118 (21%)
Query: 125 LSCVAVGSPMPFVKWRKGQNIELTPDDKLPV-------------GRNV------LTLDRV 165
L + + W KG + + V GR + L +
Sbjct: 19 LLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMI 78
Query: 166 TESE--NYTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISEVTATSVRLDW 221
T + YT +T+ + L V VK + SV L
Sbjct: 79 TMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELD----SVTLTC 132
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 41.1 bits (96), Expect = 0.001
Identities = 16/105 (15%), Positives = 30/105 (28%), Gaps = 13/105 (12%)
Query: 96 VADPVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGS-PMPFVKWRK-GQNIELTPDDKL 153
+ + R + E PL L C A + V + + G+ + +
Sbjct: 76 IQLEIHRGWLLLQVSSRVFTE---GEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWN-- 130
Query: 154 PVGRNVLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQCKYAP 196
+ LT+ + S Y C V V+ +
Sbjct: 131 ----SNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPA 171
Score = 36.8 bits (85), Expect = 0.021
Identities = 13/97 (13%), Positives = 29/97 (29%), Gaps = 15/97 (15%)
Query: 105 PQFSIPPPALLEVMLDSPLNLSCVAVGSPMPF-VKWRKGQNIELTPDDKLPVGRNVLTLD 163
++ PP + V + + L C + P +W +
Sbjct: 2 AVITLQPPWV-SVFQEETVTLHCEVLHLPGSSSTQWFLN-------GTATQTSTPSYRIT 53
Query: 164 RVTESE--NYTCIAASVLGVIETSTIVKVQCKYAPLL 198
+ ++ Y C G+ S ++++ LL
Sbjct: 54 SASVNDSGEYRCQR----GLSGRSDPIQLEIHRGWLL 86
Score = 36.0 bits (83), Expect = 0.036
Identities = 13/98 (13%), Positives = 30/98 (30%), Gaps = 11/98 (11%)
Query: 100 VRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPM---PFVKWRKGQNIELTPDDKLPVG 156
P + + ++ + + LSC + + +
Sbjct: 167 ELFPAPVLNASVTS--PLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRN---T 221
Query: 157 RNVLTLDRVTE--SENYTCIAASVLG-VIETSTIVKVQ 191
+ + S Y C AA+ G V++ S +++Q
Sbjct: 222 SSEYQILTARREDSGLYWCEAATEDGNVLKRSPELELQ 259
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 40.6 bits (94), Expect = 0.001
Identities = 17/98 (17%), Positives = 28/98 (28%), Gaps = 7/98 (7%)
Query: 95 QVADPVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRK-GQNIELTPDDKL 153
D I + + + L+C P + W+ +NI DDK
Sbjct: 103 AKKDGSDGNEEMGGITQTPYKVSISGTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKN 160
Query: 154 -PVGRNVLTLDRVTESEN---YTCIAASVLGVIETSTI 187
+ L+L +E E Y C +
Sbjct: 161 IGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYL 198
>1wft_A 1700129L13RIK protein; FN3 domain, similar to HOST cell factor 2,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.1.2.1
Length = 123
Score = 38.7 bits (89), Expect = 0.001
Identities = 20/100 (20%), Positives = 30/100 (30%), Gaps = 16/100 (16%)
Query: 481 PGTAPRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAW---------- 530
PG AP V++ + + + W+ P +P+G I Y Y +
Sbjct: 8 PG-APSTVRISK-NVDGIHLSWEPPTSPSGNILEYSAYLAIRTAQMQDNPSQLVFMRIYC 65
Query: 531 ----ETQVVDNNQLTTISDLTPHTIYTIRVQAFTSVGPGP 566
V D T R+ A G GP
Sbjct: 66 GLKTSCTVTAGQLANAHIDYTSRPAIVFRISAKNEKGYGP 105
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase,
periplasm, beta-helix, glycosidase, EXO-activity; HET:
AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A*
Length = 608
Score = 41.5 bits (97), Expect = 0.001
Identities = 25/148 (16%), Positives = 52/148 (35%), Gaps = 22/148 (14%)
Query: 567 LSAPVLVKTQQGVPSQPRDLRAVDIQ--ETAVTLAWSKPTHSGENIISYELYWNDTYAKP 624
+ P+ + + P+ L+ + E+++ L W P + I+ Y+++
Sbjct: 22 VGTPMAMAAKSSSLDAPQQLQVPTLAYDESSIVLVWKAPEDT-RKIVDYQIFSAGK---- 76
Query: 625 RDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVETYSLTGLYP 684
+ + S Y ND H+ + ++ +++ GL P
Sbjct: 77 ----------LLGKASDNNDNFSPAKPYIDHFYVNDK--DNFQHKIV--MQNFTVIGLKP 122
Query: 685 NTLYYIWLAAQSPRG-EGATTPPIPVRT 711
T Y + AQ G + PI +T
Sbjct: 123 ETSYQFTVKAQYADGSLSVASKPITAKT 150
Score = 37.3 bits (86), Expect = 0.026
Identities = 30/128 (23%), Positives = 48/128 (37%), Gaps = 25/128 (19%)
Query: 471 PIPVRTKQYEPGTAPRDVQVRPLS--SSTMVIQWDEPETPNGQITGYKVY---------- 518
P+ + K AP+ +QV L+ S++V+ W PE +I Y+++
Sbjct: 25 PMAMAAKSSSL-DAPQQLQVPTLAYDESSIVLVWKAPED-TRKIVDYQIFSAGKLLGKAS 82
Query: 519 YTQDQSLPMSAWETQVVDNN----------QLTTISDLTPHTIYTIRVQAFTSVGP-GPL 567
D P + N+ Q T+ L P T Y V+A + G
Sbjct: 83 DNNDNFSPAKPYIDHFYVNDKDNFQHKIVMQNFTVIGLKPETSYQFTVKAQYADGSLSVA 142
Query: 568 SAPVLVKT 575
S P+ KT
Sbjct: 143 SKPITAKT 150
Score = 33.8 bits (77), Expect = 0.32
Identities = 27/152 (17%), Positives = 52/152 (34%), Gaps = 29/152 (19%)
Query: 285 AVITTGETEPGTAPRDVQVRPLS--SSTMVIQWDEPETPNGQITAKHHRRIGLVETYSLT 342
+ ++ AP+ +QV L+ S++V+ W PE
Sbjct: 25 PMAMAAKSSSLDAPQQLQVPTLAYDESSIVLVWKAPED---------------------- 62
Query: 343 GLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYGKTPGFGEQAAKHHRRIGLVETYSLT 402
+ Y +A G+ + K Y ++ H+ + ++ +++
Sbjct: 63 --TRKIVDYQIFSAGKLLGKASDNNDNFSPAKPYIDHFYVNDKDNFQHKIV--MQNFTVI 118
Query: 403 GLYPNTLYYIWLAAQSPRG-EGATTPPIPVRT 433
GL P T Y + AQ G + PI +T
Sbjct: 119 GLKPETSYQFTVKAQYADGSLSVASKPITAKT 150
Score = 33.0 bits (75), Expect = 0.48
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 250 IITTYYTVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVR 304
I+ +TV L P T Y+F + A G +S + P+ V VR
Sbjct: 110 IVMQNFTVIGLKPETSYQFTVKAQYADGSLSVASKPITAK----TSAKPQIVNVR 160
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 37.4 bits (86), Expect = 0.003
Identities = 15/96 (15%), Positives = 33/96 (34%), Gaps = 16/96 (16%)
Query: 105 PQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRN------ 158
PQ ++ P + S ++ +C A S + + + E D ++ +
Sbjct: 11 PQITVQPETQS-AIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGG 69
Query: 159 -------VLTLDRVTESEN--YTCIAASVLGVIETS 185
+L L V + Y C+ ++ G +
Sbjct: 70 ELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSV 105
>3b4n_A Endo-pectate lyase; pectin, galacturonic acid, right-handed
parallel beta helix fold; 1.45A {Erwinia chrysanthemi}
PDB: 3b8y_A* 3b90_A
Length = 344
Score = 39.1 bits (90), Expect = 0.005
Identities = 15/96 (15%), Positives = 28/96 (29%), Gaps = 8/96 (8%)
Query: 636 AVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRIGLVE----TYSLTGLYPNTLYYIW 691
L WS + E+Y T + RI +++ T+ Y+ W
Sbjct: 32 VNYLGWST---DESKVARQEVY-RGTTSNPDLRERIAVLDAETRTFKDADTNSGLNYWYW 87
Query: 692 LAAQSPRGEGATTPPIPVRTKQYVPGAPPQNVSCEP 727
+ S + + A + C+P
Sbjct: 88 VDVVSENQAQVVSNAVTTAPNAGPLRAAKASSECKP 123
Score = 29.1 bits (64), Expect = 7.2
Identities = 5/56 (8%), Positives = 11/56 (19%)
Query: 398 TYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQYGKTPGFGEQALYPNTLY 453
T+ Y+ W+ S + + P +
Sbjct: 72 TFKDADTNSGLNYWYWVDVVSENQAQVVSNAVTTAPNAGPLRAAKASSECKPGATF 127
>3og6_B Interleukin 28 receptor, alpha (interferon, lambd receptor);
helical bundle, fibronectin type III domain,
beta-sandwich, signaling, membrane; HET: BMA NAG; 2.10A
{Homo sapiens} PDB: 3og4_B*
Length = 226
Score = 38.5 bits (89), Expect = 0.006
Identities = 29/175 (16%), Positives = 61/175 (34%), Gaps = 13/175 (7%)
Query: 622 AKPRDLRAVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKHHRRI----GLVETY 677
A P+++ + Q +V L W + +++ +Y + + + + R + G E
Sbjct: 7 APPQNVT-LLSQNFSVYLTWLPGLGNPQDV-TYFVAYQ-SSPTRRRWREVEECAGTKELL 63
Query: 678 -SLTGLYPNTL---YYIWLAAQSPRGEGATTPPIPVRTKQYVPGAPPQNVSCEPLSSTSI 733
S+ L L + + SP + + V APP V + S
Sbjct: 64 CSMMCLKKQDLYNKFKGRVRTVSPSSKSPWVESEYLDYLFEVEPAPPVLVLTQTEEILSA 123
Query: 734 RISWEPPPVERSNGHIVYYKLQFVETGRSDSEASIVTLKNQTSFVLDELKKWTEY 788
+++ PP + Y++ F + G + VT Q + + +
Sbjct: 124 NATYQLPPCMPPLD--LKYEVAFWKEGAGNKTLFPVTPHGQPVQITLQPAASEHH 176
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 37.9 bits (87), Expect = 0.011
Identities = 13/131 (9%), Positives = 33/131 (25%), Gaps = 6/131 (4%)
Query: 100 VRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRNV 159
+ +I P V + + L S + + + +
Sbjct: 87 MEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQD 146
Query: 160 LTLDRVTESE--NYTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISEVTATSV 217
+T+ T + YT S K+ A + + + +
Sbjct: 147 ITIQEFTADKNGVYTVKVWGESEDSAASASTKIM--LATM--NVDQDVVESKTVALGNEI 202
Query: 218 RLDWTYPSETL 228
L++ + +
Sbjct: 203 SLNYVVSEDIV 213
Score = 35.6 bits (81), Expect = 0.057
Identities = 23/215 (10%), Positives = 47/215 (21%), Gaps = 22/215 (10%)
Query: 103 VPPQFSIPPPALLEVMLDSPLNLSCVAVGS-PMPF---VKWRK-GQNIELTPDDKLPVGR 157
+ SI + L+ G P+P W K Q E
Sbjct: 1 MAFTVSIQSNKR-CFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNT-------- 51
Query: 158 NVLTLDRVTESE--NYTCIAASVLGVIETSTIVK-VQCKYAPLLTLPVAPLDVKISEVTA 214
LT+ T +Y + + V ++ + V
Sbjct: 52 ATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVE 111
Query: 215 TSVRLDWTYPSETLLYYVIQYKPKAANTPYSEISGIITTYYTVRNLSPYTEYEFYIIAVN 274
+ ++ Y + Y T T++ + + +
Sbjct: 112 LHATVKFSGGKTPADNYELHYSWSKGEDVIDT-----TQDITIQEFTADKNGVYTVKVWG 166
Query: 275 NLGRGPPSSPAVITTGETEPGTAPRDVQVRPLSSS 309
S+ I + + L +
Sbjct: 167 ESEDSAASASTKIMLATMNVDQDVVESKTVALGNE 201
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 37.4 bits (86), Expect = 0.011
Identities = 15/101 (14%), Positives = 32/101 (31%), Gaps = 10/101 (9%)
Query: 99 PVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVG-SPMPFVKWRKGQNIELTP-------- 149
V ++ D ++L C + G P P ++W + +
Sbjct: 112 LVELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVAD 171
Query: 150 DDKLPVGRNVLTLDRVTESENYTCIAASVLGVIETSTIVKV 190
L + + R + E +C S L +E + + +
Sbjct: 172 GVGLYAVAASVIM-RGSSGEGVSCTIRSSLLGLEKTASISI 211
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 37.2 bits (85), Expect = 0.018
Identities = 21/139 (15%), Positives = 32/139 (23%), Gaps = 32/139 (23%)
Query: 110 PPPALLEVMLDSPLNLSCVAVGSPMP---FVKWRKG--------------QNIELTPDDK 152
P L V + + C + V W N+
Sbjct: 123 EEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQS 182
Query: 153 LPVGRNV-------------LTLDRVTESE--NYTCIAASVLGVIETSTIVKVQCKYAPL 197
L RN + L V ES+ YTC + ++ V
Sbjct: 183 LGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDEFQR 242
Query: 198 LTLPVAPLDVKISEVTATS 216
P P D + +
Sbjct: 243 TISPTPPTDKGQQGILNGN 261
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 35.2 bits (80), Expect = 0.022
Identities = 16/112 (14%), Positives = 31/112 (27%), Gaps = 17/112 (15%)
Query: 97 ADPVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPM---PFVKWRKGQNIEL------ 147
P + P + V + G + P +KW KG+ +EL
Sbjct: 4 GSSGAEEPTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGA 63
Query: 148 ------TPDDKLPVGRNVLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
+ + V L + +V + Y + + V+
Sbjct: 64 RFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVE 115
>1y6k_R Interleukin-10 receptor alpha chain; helix bundle, receptor
complex, immune system; 2.52A {Homo sapiens} SCOP:
b.1.2.1 b.1.2.1 PDB: 1j7v_R* 1lqs_R 1y6m_R 1y6n_R
Length = 214
Score = 36.3 bits (83), Expect = 0.026
Identities = 18/144 (12%), Positives = 37/144 (25%), Gaps = 22/144 (15%)
Query: 447 LYPNTLYYIWLAAQSPRGEGA---TTPPIPVRTKQYEPGTAPRDVQVRPLSSSTMV-IQW 502
LY + Y + A T V E V + + + IQ
Sbjct: 69 LYHSNGYRARVRAVDGSRHSQWTVTNTRFSVD----EVTLTVGSVNLEIHNGFILGKIQL 124
Query: 503 DEPETPNGQIT---------GYKVYYTQDQSLPMSAWETQVVDNNQLTTISDLTPHTIYT 553
P+ Q T Y++ + T ++ ++ +
Sbjct: 125 PRPKMAPAQDTYESIFSHFREYEIAIRKVPG---QFTFTHKKVKHEQFSLLTSGEVGEFC 181
Query: 554 IRVQAFTSVGP--GPLSAPVLVKT 575
++V+ + G S +
Sbjct: 182 VQVKPSVASRSNKGMWSKEECISL 205
Score = 31.6 bits (71), Expect = 0.91
Identities = 21/218 (9%), Positives = 47/218 (21%), Gaps = 53/218 (24%)
Query: 484 APRDVQVRPLSSSTMVIQWDEPETPNGQITGYKVYYTQDQSLPMSAWETQVVDNNQLTT- 542
+P V ++ W + Y+V + +W + + T
Sbjct: 7 SPPSVWFEAEFFHH-ILHWTPIPQQSESTC-YEVAL---LRYGIESWNS--ISQCSQTLS 59
Query: 543 ------ISDLTPHTIYTIRVQAFTSVGPGPLSAPVLVKT----QQGVPSQPRDLRAVDIQ 592
DL Y RV+A S + T + + +
Sbjct: 60 YDLTAVTLDLYHSNGYRARVRAVD---GSRHSQWTVTNTRFSVDEVTLTVGSVNLEIHNG 116
Query: 593 ETAVTLAWSKPTHSGENIISYELYWNDTYAKPRDLRAVDIQETAVTLAWSKPTHSGENII 652
+ +P + ++ +
Sbjct: 117 FILGKIQLPRPKMAPAQDTYESIFSHFRE------------------------------- 145
Query: 653 SYELYWNDTYAKAKHHRRIGLVETYSLTGLYPNTLYYI 690
YE+ + + E +SL + +
Sbjct: 146 -YEIAIRKVPGQFTFTHKKVKHEQFSLLTSGEVGEFCV 182
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 34.9 bits (80), Expect = 0.056
Identities = 12/73 (16%), Positives = 29/73 (39%), Gaps = 10/73 (13%)
Query: 121 SPLNLSCVAVGSPMPFVKWRK-GQNIELTPDDKLPVGRNVLTLDRVTESENYTCIAASVL 179
L+C + P + + G++++L+ R + + S + C A + +
Sbjct: 116 INTTLTCEVMNGTDPELNLYQDGKHLKLSQ-------RVITHKWTTSLSAKFKCTAGNKV 168
Query: 180 GVIETSTIVKVQC 192
+ S++ V C
Sbjct: 169 S--KESSVEPVSC 179
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 35.7 bits (81), Expect = 0.073
Identities = 20/134 (14%), Positives = 39/134 (29%), Gaps = 8/134 (5%)
Query: 93 VRQVADPVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPD-- 150
V + + + S+ L + + C V +
Sbjct: 219 VLKPEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGR 278
Query: 151 ----DKLPVGRNVLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAP 204
+ G + + + + + Y C A S + E S I Q T+P +P
Sbjct: 279 ILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSP 338
Query: 205 LDVKISEVTATSVR 218
VK ++ +V
Sbjct: 339 TVVKGVAGSSVAVL 352
Score = 30.4 bits (67), Expect = 3.5
Identities = 25/121 (20%), Positives = 37/121 (30%), Gaps = 17/121 (14%)
Query: 110 PPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRNV---------- 159
A+L L P + C + KW L D+ P V
Sbjct: 451 NVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVS 510
Query: 160 LTLDRVTESE--NYTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISEVTATSV 217
LTL+ VT ++ Y C ET+ V V + DV +++ A
Sbjct: 511 LTLNLVTRADEGWYWCGVKQGHFYGETAA-VYVAVEERK----AAGSRDVSLAKADAAPD 565
Query: 218 R 218
Sbjct: 566 E 566
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 34.7 bits (79), Expect = 0.096
Identities = 13/104 (12%), Positives = 28/104 (26%), Gaps = 12/104 (11%)
Query: 103 VPPQFSIPPPALLEVMLDSPLNLSCVAVGS-PMPFVKWRKGQNIELTPDDKLPVGRN--- 158
PQ + +++ + CV+ G P + W + ++P +
Sbjct: 115 AKPQNTAEVQ-KVQLTGEPVPMARCVSTGGRPPAQITWHSDLG-GMPQTSQVPGFLSGTV 172
Query: 159 ------VLTLDRVTESENYTCIAASVLGVIETSTIVKVQCKYAP 196
+L + + TC V + Y
Sbjct: 173 TVTSLWILVPSSQVDGKQVTCKVEHESFEKPQLLTVSLTVYYPH 216
>1jb0_F Photosystem 1 reaction centre subunit III; membrane protein,
multiprotein-pigment complex, photosynthes; HET: CL1 PQN
BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP:
f.23.16.1 PDB: 3pcq_F*
Length = 164
Score = 33.4 bits (76), Expect = 0.13
Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 112 PALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELT-PDDKLPV 155
E+++D PL + C+ G P ++ + ELT D+++ V
Sbjct: 117 ANEKEIIIDVPLAIKCMLTGFAWPLAALKELASGELTAKDNEITV 161
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 33.3 bits (76), Expect = 0.15
Identities = 17/104 (16%), Positives = 28/104 (26%), Gaps = 17/104 (16%)
Query: 103 VP--PQFSIPPPALLEVMLDSPLNLSCVAVGSPMPF-VKWRKGQNIELTPDDKLPVGRNV 159
VP P+ S+ PP + + L+C KW +
Sbjct: 1 VPQKPKVSLNPPWN-RIFKGENVTLTCNGNNFFEVSSTKWFHN-------GSLSEETNSS 52
Query: 160 LTLDRVTESE--NYTCIAASVLGVIETSTIVKVQCKYAPLLTLP 201
L + + Y C + S V ++ LL
Sbjct: 53 LNIVNAKFEDSGEYKCQH----QQVNESEPVYLEVFSDWLLLQA 92
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 33.4 bits (76), Expect = 0.16
Identities = 11/72 (15%), Positives = 23/72 (31%), Gaps = 8/72 (11%)
Query: 121 SPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRNVLTLDRVTESENYTCIAASVLG 180
S L+C + +K +G L + ++ + C A + +
Sbjct: 111 SNATLTCEVLEGTDVELKLYQG-KEHLRSLRQK-----TMSYQWTNLRAPFKCKAVNRVS 164
Query: 181 VIETSTIVKVQC 192
+ S + V C
Sbjct: 165 --QESEMEVVNC 174
Score = 29.9 bits (67), Expect = 2.6
Identities = 15/108 (13%), Positives = 31/108 (28%), Gaps = 18/108 (16%)
Query: 120 DSPLNLSCVAVGSPMPFVKWRKGQN-IELTPDDKLPVGRNV---------LTLDRVTE-- 167
LN+ + + V+W +G + P ++ L + +T
Sbjct: 13 GINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDD 72
Query: 168 SENYTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISEVTAT 215
S Y S G + + ++ V+ + AT
Sbjct: 73 SGTYNVTVYSTNGTRILNKALDLRIL------EMVSKPMIYWECSNAT 114
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 32.1 bits (73), Expect = 0.19
Identities = 18/101 (17%), Positives = 34/101 (33%), Gaps = 15/101 (14%)
Query: 105 PQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRN------ 158
Q P + V+ L+C + ++W L DDK + N
Sbjct: 6 SQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVR 65
Query: 159 ------VLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQ 191
+++ V+ S+ YTC + + V + + V
Sbjct: 66 ASWHELSISVSDVSLSDEGQYTC-SLFTMPVKTSKAYLTVL 105
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN;
1.75A {Gallus gallus}
Length = 231
Score = 33.5 bits (76), Expect = 0.25
Identities = 22/128 (17%), Positives = 41/128 (32%), Gaps = 16/128 (12%)
Query: 104 PPQFSIPPPALLEVMLDSPLNLSCVAVGSPMP---FVKWRKGQNIELTPDDKLPVGRN-- 158
P Q PP+ E+ + L C+ V P V W + ++ L PD +
Sbjct: 12 PIQLYAIPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNG 71
Query: 159 ------VLTLDRV--TESENYTCIA---ASVLGVIETSTIVKVQCKYAPLLTLPVAPLDV 207
+ + E +TC L + ++ + P ++
Sbjct: 72 TYSASSAVPVSTQDWLSGERFTCTVQHEELPLPLSKSVYRNTGPTTPPLIYPFAPHPEEL 131
Query: 208 KISEVTAT 215
+S VT +
Sbjct: 132 SLSRVTLS 139
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 33.7 bits (76), Expect = 0.26
Identities = 20/109 (18%), Positives = 30/109 (27%), Gaps = 10/109 (9%)
Query: 100 VRRVPPQFSIPP-PALLEVMLDSPLNLSCVAVGS-PMPFVKWR-KGQNIELTPDDKLPVG 156
+P P +LEV D+ + C G P+ + + L P
Sbjct: 184 TFVLPATPPQLVSPRVLEV--DTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGND 241
Query: 157 RNVLTLDRVTESE-----NYTCIAASVLGVIETSTIVKVQCKYAPLLTL 200
+E TC ET V + AP + L
Sbjct: 242 SFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVIL 290
Score = 31.0 bits (69), Expect = 1.7
Identities = 29/202 (14%), Positives = 52/202 (25%), Gaps = 17/202 (8%)
Query: 100 VRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGS---PMPFVKWRKGQNIELTPDDKLPVG 156
V P + + P + L L C G V +G EL + +
Sbjct: 82 VYWTPERVELAPLPSW-QPVGKNLTLRCQVEGGAPRANLTVVLLRG-EKELKREPAVGEP 139
Query: 157 RNV---LTLDRVTESENYTCIAASVLG------VIETSTIVKVQCKYAPLLT-LPVAPLD 206
V + + R N++C L TS ++Q P V+P
Sbjct: 140 AEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRV 199
Query: 207 VKISEVTATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEISGIITTYYTVRNLSPYTEY 266
+++ LD +P ++ + T
Sbjct: 200 LEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQ 259
Query: 267 EFYIIAVNNLGRGPPSSPAVIT 288
+ LG + +T
Sbjct: 260 R--LTCAVILGNQSQETLQTVT 279
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 32.5 bits (74), Expect = 0.28
Identities = 16/102 (15%), Positives = 33/102 (32%), Gaps = 15/102 (14%)
Query: 104 PPQFSI-PPPALLEVMLDSPLNLSCVAVGSPMPF-VKWRKGQNIELTPDDKLPVGRNVLT 161
PP+ + P + V+ + + L+C SP ++W + +P
Sbjct: 2 PPKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHN-------GNLIPTHTQPSY 54
Query: 162 LDRVTESE--NYTCIAASVLGVIETSTIVKVQCKYAPLLTLP 201
+ ++ YTC S V + + L+
Sbjct: 55 RFKANNNDSGEYTCQTGQT----SLSDPVHLTVLFEWLVLQT 92
>3lw5_F Photosystem I reaction center subunit III, chloro; photosynthesis,
electron transfer, membrane proteins, large, complexes,
chromophore; HET: CL1 PQN BCR LMU LMG; 3.30A {Pisum
sativum} PDB: 2o01_F*
Length = 154
Score = 31.6 bits (71), Expect = 0.48
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 112 PALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDD 151
P E+++D PL S + G P +R+ N EL ++
Sbjct: 114 PTQKEIIIDVPLASSLLFRGFSWPVAAYRELLNGELVDNN 153
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 32.2 bits (73), Expect = 0.63
Identities = 37/301 (12%), Positives = 65/301 (21%), Gaps = 65/301 (21%)
Query: 111 PPALLEVMLDSPLNLSCVAVGS-PMPFVKW--RKGQNIELTPDDKLPVGRNVLTLDRVTE 167
P + V L C P+ ++W G EL + K +T +
Sbjct: 9 PDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQK-EGHFPRVTTVSEST 67
Query: 168 SEN------------------YTC---IAASVLGVIETSTIVKVQCKYAPLLTLPVAPLD 206
Y C S ++ ++ + P + P
Sbjct: 68 KRENMDFSISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAA 127
Query: 207 VKISEVTAT-----------SVRLDWTYPSETLLYYVIQYKPKAANTPYSEISGIITTYY 255
+ T + + L W L + P + YS S
Sbjct: 128 RATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVV-- 185
Query: 256 TVRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQW 315
L+ + I V + + T +
Sbjct: 186 ----LTREDVHSQVICEVAH----VTLQGDPLRGTANLSETIRVPPTLEVTQQ------- 230
Query: 316 DEPETPNGQITAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIPVRTKQ 375
P Q+ T + YP L WL + + +
Sbjct: 231 --PVRAENQVNV----------TCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGT 278
Query: 376 Y 376
Y
Sbjct: 279 Y 279
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 31.8 bits (71), Expect = 0.67
Identities = 23/110 (20%), Positives = 40/110 (36%), Gaps = 9/110 (8%)
Query: 102 RVPPQFSIPPPALLEVMLDSPLNLSCVAVGS-PMPFVKWRKGQNIELTPDDKLPV--GRN 158
+V P PP ++ V L + L+C + V+WR T + GR+
Sbjct: 4 QVKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLD----TSLGAVQSDTGRS 59
Query: 159 VLTLDRVTESEN--YTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLD 206
VLT+ + S C+ + + + + V L P A +
Sbjct: 60 VLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPNQLTVSPAALVP 109
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 31.0 bits (70), Expect = 0.96
Identities = 16/110 (14%), Positives = 32/110 (29%), Gaps = 18/110 (16%)
Query: 95 QVADPVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMP-FVKWRKGQNIELTPDDKL 153
+ D + + P V+ + L C SP +W + +
Sbjct: 1 RTEDLPK---AVVFLEPQWY-SVLEKDSVTLKCQGAYSPEDNSTQWFHN-------ESLI 49
Query: 154 PVGRNVLTLDRVTESE--NYTCIAASVLGVIETSTIVKVQCKYAPLLTLP 201
+ +D T ++ Y C + S V+++ LL
Sbjct: 50 SSQASSYFIDAATVNDSGEYRCQT----NLSTLSDPVQLEVHIGWLLLQA 95
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 1.1
Identities = 4/11 (36%), Positives = 5/11 (45%)
Query: 475 RTKQYEPGTAP 485
K Y +AP
Sbjct: 28 SLKLYADDSAP 38
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology,
X-RAY solution scattering, constrained modelling, immune
system; NMR {Homo sapiens}
Length = 523
Score = 31.7 bits (72), Expect = 1.3
Identities = 50/294 (17%), Positives = 86/294 (29%), Gaps = 51/294 (17%)
Query: 99 PVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVG-SPMPF-VKWRKG---QNIELTP---- 149
P P+ + L C+ P P V W G + P
Sbjct: 214 SASTKGPSVFPLAPSS-KSTSGGTAALGCLVKDYFPQPVTVSWNSGALTSGVHTFPAVLQ 272
Query: 150 DDKLPVGRNVLTLDRVT-ESENYTCIAASVLGVIETSTIVKVQCKYAPLLTLPVAPLDVK 208
L +V+T+ + ++ Y C + V+ + L P +
Sbjct: 273 SSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPLSLPSVFLFPPKPKDTLM 332
Query: 209 ISEV------------TATSVRLDWTYPSETLLYYVIQYKPKAANTPYSEISGIITTYYT 256
IS V+ +W + + + + N+ Y +S T
Sbjct: 333 ISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVS-----VLT 387
Query: 257 VRNLSPYTEYEFYIIAVNNLGRGPPSSPAVITTGETEPGTAPRDVQVRPLSSSTMVIQWD 316
V + + E+ N + PA I ++ PR+ QV L S
Sbjct: 388 VLHQNWLDGKEYKCKVSN------KALPAPIEKTISKAKGQPREPQVYTLPPSRE----- 436
Query: 317 EPETPNGQITAKHHRRIGLVETYSLTGLYPNTLYYIWLAAQSPRGEGATTPPIP 370
E Q++ T + G YP+ + W + P TTPP+
Sbjct: 437 --EMTKNQVSL----------TCLVKGFYPSDIAVEWESNGQPENNYKTTPPVL 478
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 30.6 bits (69), Expect = 1.3
Identities = 7/55 (12%), Positives = 17/55 (30%), Gaps = 6/55 (10%)
Query: 121 SPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRNVLTLDRVTESENYTCIA 175
S L+C + +K +G+ + + ++ + C A
Sbjct: 116 SNATLTCEVLEGTDVELKLYQGKEHLRSL------RQKTMSYQWTNLRAPFKCKA 164
>2wsc_F Photosystem I reaction center subunit III, chloroplastic;
photosynthesis, electron transfer, membrane proteins,
large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A
{Spinacia oleracea} PDB: 2wse_F* 2wsf_F*
Length = 231
Score = 31.0 bits (69), Expect = 1.4
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 112 PALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDD 151
P E+++D PL S + G P +R+ N EL ++
Sbjct: 191 PTQKEIIIDVPLASSLLFRGFSWPVAAYRELLNGELVDNN 230
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 30.6 bits (68), Expect = 1.8
Identities = 20/96 (20%), Positives = 29/96 (30%), Gaps = 7/96 (7%)
Query: 100 VRRVPPQFSIPPPALLEVMLDSPLN--LSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGR 157
V + + I LE + L+ L P W L+P D
Sbjct: 120 VTALIEKPDIHFLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNA---LSPLDPETTRS 176
Query: 158 NVLTLDRVTE--SENYTCIAASVLGVIETSTIVKVQ 191
+ LTL E N TC + T V++
Sbjct: 177 SELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLN 212
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody,
immune system; NMR {Homo sapiens}
Length = 512
Score = 31.1 bits (70), Expect = 1.8
Identities = 27/165 (16%), Positives = 52/165 (31%), Gaps = 32/165 (19%)
Query: 41 QVRPLSSSTMVIQWDEPETPNGQITHPPTRAARSHARLAAQSVLR--------------- 85
V+ +S + + PE+P Q + PT ++ LA +
Sbjct: 214 VVQHTASKSKKEIFRWPESPKAQASSVPTAQPQAEGSLAKATTAPATTRNTGRGGEEKKK 273
Query: 86 ---RGRLAHAVRQVAD-PVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMP--FVKW 139
+ + + P P + PA+ ++ L +C VGS + + W
Sbjct: 274 EKEKEEQEERETKTPECPSHTQPLGVYLLTPAVQDLWLRDKATFTCFVVGSDLKDAHLTW 333
Query: 140 RKGQNIELTPDDKLPVGRN---------VLTLDR--VTESENYTC 173
+ ++ + R+ LTL R + TC
Sbjct: 334 EVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTC 378
>3fvc_A GP115, glycoprotein GP110; viral fusion protein, PH domains, fusion
loops, glycoprotein protein, membrane, transmembrane,
viral protein; HET: NAG; 3.20A {Human herpesvirus 4}
Length = 663
Score = 30.7 bits (69), Expect = 2.4
Identities = 14/104 (13%), Positives = 34/104 (32%), Gaps = 12/104 (11%)
Query: 666 KHHRRIGLVETYSLTG--------LYPNTL----YYIWLAAQSPRGEGATTPPIPVRTKQ 713
++ + + + +G L P +L L + + +PP P +
Sbjct: 339 RYTKGQEAITYFITSGGLLLAWLPLTPRSLATVKNLTELTTPTSSPPSSPSPPAPSAARG 398
Query: 714 YVPGAPPQNVSCEPLSSTSIRISWEPPPVERSNGHIVYYKLQFV 757
P A + + ++T+ P + + ++QF
Sbjct: 399 STPAAVLRRRRRDAGNATTPVPPTAPGKSLGTLNNPATVQIQFA 442
>1q38_A Fibronectin; amyloid fibril, anastellin, extracellular matrix,
dynamic fluctuations, conformational exchange, chaps,
cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 89
Score = 28.6 bits (63), Expect = 2.7
Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 224 PSETLLYYVIQYKPKAANTPYSE--ISGIITTYYTVRNLSPYTEYEFYIIAVNNLGR 278
+ Y+++++PK + + E I G + + YT++ L P YE +I++ G
Sbjct: 8 QPSHISKYILRWRPKNSVGRWKEATIPGHLNS-YTIKGLKPGVVYEGQLISIQQYGH 63
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C
region, hinge region, immunoglobulin; HET: NAG FUL NDG
BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2
Length = 434
Score = 29.9 bits (67), Expect = 4.1
Identities = 24/201 (11%), Positives = 58/201 (28%), Gaps = 26/201 (12%)
Query: 74 SHARLAAQSVLRRGRLAHAVRQVADPVRRVPPQFSIPPPALLEVMLDSPLNLSCVAVG-- 131
+H + + + + V V F PP +++ ++CV V
Sbjct: 199 AHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDTLLITVTPKVTCVVVDIS 258
Query: 132 ---SPMPFVKWRKGQNIE---LTPDDKLPVGR----NVLTLDRVT--ESENYTCIA---A 176
+ F + + P ++ + L + + + C A
Sbjct: 259 KDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAA 318
Query: 177 SVLGVIETSTIVKVQCKYAPLLTLPVAPLDVKISEVTAT---------SVRLDWTYPSET 227
+ +T + K + + + T+P + +V+ T + ++W +
Sbjct: 319 FPAPIEKTISKTKGKPRAPQVYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQSDGQA 378
Query: 228 LLYYVIQYKPKAANTPYSEIS 248
Y + Y S
Sbjct: 379 PENYKNTQPIMDTDGSYFVYS 399
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 29.0 bits (64), Expect = 5.6
Identities = 15/95 (15%), Positives = 27/95 (28%), Gaps = 19/95 (20%)
Query: 104 PPQFSIPPPALLEVMLDSPLNLSCVAV-GSPMPFVKWRKGQNIELTPDDKLPVGRNV--- 159
+ S L + + +C + G+P P + W + P + P G
Sbjct: 118 ATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRT 177
Query: 160 ---------------LTLDRVTESENYTCIAASVL 179
L L + ++ C A L
Sbjct: 178 VREASGLLSLTSTLYLRLRKDDRDASFHCAAHYSL 212
>1u58_A MHC-I homolog M144; MCMV, MHC-I homolog, immune system; 1.90A
{Murid herpesvirus 1} SCOP: b.1.1.2 d.19.1.1 PDB: 1pqz_A
Length = 253
Score = 29.1 bits (65), Expect = 5.8
Identities = 25/146 (17%), Positives = 29/146 (19%), Gaps = 26/146 (17%)
Query: 629 AVDIQETAVTLAWSKPTHSGENIISYELYWNDTYAKAKH------HRRIGLVETYSL--- 679
A D ET A S + Y A A R G L
Sbjct: 107 AYDGNETEDDTATSASERDRDCQKKLTEYRKLVLASAVSPQLEVERRSSGREGGMRLRCF 166
Query: 680 -TGLYPNTLYYIWLAAQSPRGEGAT--TPPIPVR-----TKQ-----YVPGAPPQNVSC- 725
YP L W G Q YV G SC
Sbjct: 167 ARDYYPADLEIRWWKDDGGGGALPQTSKQHHDPLPSGNGLYQKHIDVYVDGGLEHVYSCR 226
Query: 726 ---EPLSSTSIRISWEPPPVERSNGH 748
+ W+ + H
Sbjct: 227 VKGIATGLELQIVRWKGYARGAGHHH 252
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable
transcriptional repressor ARSR family, structural
genomics, PSI-2; 1.48A {Rhodococcus SP}
Length = 151
Score = 28.3 bits (63), Expect = 7.8
Identities = 12/75 (16%), Positives = 24/75 (32%), Gaps = 10/75 (13%)
Query: 60 PNGQITHPPTRAARSHARLAAQSVLRRGRLAHAVRQVADPVRRVPPQFSIPPPALLEVML 119
G + P +R R A + + A+P RR L++++
Sbjct: 19 FQGHMNSPTSRPLRRDPLHNALVTTNVLVVLDQLEVAAEPTRR----------RLVQLLT 68
Query: 120 DSPLNLSCVAVGSPM 134
++ +A P
Sbjct: 69 SGEQTVNNLAAHFPA 83
>3s9d_B Interferon alpha/beta receptor 2; human, type I interferons, IFNA2,
ifnar2, SUB-complex of the interferon signaling complex;
2.00A {Homo sapiens} PDB: 1n6u_A 1n6v_A 2hym_A 2ksx_B
2kz1_B 2lag_B 3se4_C* 3se3_C* 3s8w_A*
Length = 199
Score = 28.5 bits (63), Expect = 7.9
Identities = 8/71 (11%), Positives = 23/71 (32%), Gaps = 1/71 (1%)
Query: 719 PPQNVSCEPLSSTSIRISWEPPPVERSNGHIVY-YKLQFVETGRSDSEASIVTLKNQTSF 777
PP+ + ++ + + E + + Q + + ++
Sbjct: 103 PPEFEIVGFTNHINVMVKFPSIVEEELQFDLSLVIEEQSEGIVKKHKPEIKGNMSGNFTY 162
Query: 778 VLDELKKWTEY 788
++D+L T Y
Sbjct: 163 IIDKLIPNTNY 173
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 28.7 bits (64), Expect = 9.2
Identities = 16/77 (20%), Positives = 23/77 (29%), Gaps = 3/77 (3%)
Query: 100 VRRVPPQFSIPPPALLEVMLDSPLNLSCVAVGSPMPFVKWRKGQNIELTPDDKLPVGRNV 159
V + S+ +V + LSC + S + R+G E V R
Sbjct: 213 VTGPYEKPSLSAQPGPKVQAGESVTLSCSSRSSYDMYHLSREGGAHERRLPAVRKVNRTF 272
Query: 160 ---LTLDRVTESENYTC 173
L T Y C
Sbjct: 273 QADFPLGPATHGGTYRC 289
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.133 0.406
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 14,056,992
Number of extensions: 853583
Number of successful extensions: 4684
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3081
Number of HSP's successfully gapped: 1555
Length of query: 904
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 802
Effective length of database: 3,853,851
Effective search space: 3090788502
Effective search space used: 3090788502
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.1 bits)