BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8772
(234 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q99ND9|RWDD1_RAT RWD domain-containing protein 1 OS=Rattus norvegicus GN=Rwdd1 PE=2
SV=1
Length = 243
Score = 163 bits (412), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 97/228 (42%), Positives = 157/228 (68%), Gaps = 11/228 (4%)
Query: 2 DYQEEQSNEIEALDSIYYGDMEILEKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPE 61
DY EEQ NE+EAL+SIY +L ++P FTI + SE +++ + L+F Y+ KYP+
Sbjct: 3 DYGEEQRNELEALESIYPDSFTVLSENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPD 62
Query: 62 EIPIIEIENCDNIDEDVERELKEYLLTQANENLGMVMIFTLVSSAQEWLSTKSDQLKKDK 121
E P+ EI + +N++++ ++ + L QA ENLGMVMIFTLV++ QE L+ DQ+K +
Sbjct: 63 EAPLYEIFSQENLEDNDVSDILKLLALQAEENLGMVMIFTLVTAVQEKLNEIVDQIKTRR 122
Query: 122 EEAEEKRIKAEEAAEQKRFEGTVVTLETFIAWKAKFDKDMAHIIFEEKNKAKEKTAG--K 179
EE ++++ K E AE+K F GT VT+E F++WKAKFD ++ I ++K +E+ AG K
Sbjct: 123 EEEKKQKEKEAEEAEKKLFHGTPVTIENFLSWKAKFDAELLEI--KKKRMKEEEQAGKNK 180
Query: 180 LTGREMFMQDKSMNESDLKFIEESGDGGLDATESVEVNETLFQDMNDL 227
L+G+++F D +++ SD++F+E++G+ +VEV+E+LFQ+M+DL
Sbjct: 181 LSGKQLFETDHNLDTSDIQFLEDAGN-------NVEVDESLFQEMDDL 221
>sp|Q9CQK7|RWDD1_MOUSE RWD domain-containing protein 1 OS=Mus musculus GN=Rwdd1 PE=1 SV=1
Length = 243
Score = 163 bits (412), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 97/228 (42%), Positives = 156/228 (68%), Gaps = 11/228 (4%)
Query: 2 DYQEEQSNEIEALDSIYYGDMEILEKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPE 61
DY EEQ NE+EAL+SIY +L + P FTI + SE +++ + L+F Y+ KYP+
Sbjct: 3 DYGEEQRNELEALESIYPDSFTVLSESPPSFTITVTSEAGENDETVQTTLKFTYSEKYPD 62
Query: 62 EIPIIEIENCDNIDEDVERELKEYLLTQANENLGMVMIFTLVSSAQEWLSTKSDQLKKDK 121
E P+ EI + +N++++ ++ + L QA ENLGMVMIFTLV++ QE L+ DQ+K +
Sbjct: 63 ETPLYEIFSQENLEDNDVSDILKLLALQAEENLGMVMIFTLVTAVQEKLNEIVDQIKTRR 122
Query: 122 EEAEEKRIKAEEAAEQKRFEGTVVTLETFIAWKAKFDKDMAHIIFEEKNKAKEKTAG--K 179
EE ++++ K E AE+K F GT VT+E F++WKAKFD ++ I ++K +E+ AG K
Sbjct: 123 EEEKKQKEKEAEEAEKKLFHGTPVTIENFLSWKAKFDAELLEI--KKKRMKEEEQAGKNK 180
Query: 180 LTGREMFMQDKSMNESDLKFIEESGDGGLDATESVEVNETLFQDMNDL 227
L+G+++F D +++ SD++F+E++G+ +VEV+E+LFQ+M+DL
Sbjct: 181 LSGKQLFETDHNLDTSDIQFLEDAGN-------NVEVDESLFQEMDDL 221
>sp|Q9H446|RWDD1_HUMAN RWD domain-containing protein 1 OS=Homo sapiens GN=RWDD1 PE=1 SV=1
Length = 243
Score = 158 bits (399), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 94/225 (41%), Positives = 153/225 (68%), Gaps = 11/225 (4%)
Query: 2 DYQEEQSNEIEALDSIYYGDMEILEKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPE 61
DY EEQ NE+EAL+SIY +L ++P FTI + SE +++ + L+F Y+ KYP+
Sbjct: 3 DYGEEQRNELEALESIYPDSFTVLSENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPD 62
Query: 62 EIPIIEIENCDNIDEDVERELKEYLLTQANENLGMVMIFTLVSSAQEWLSTKSDQLKKDK 121
E P+ EI + +N++++ ++ + L QA ENLGMVMIFTLV++ QE L+ DQ+K +
Sbjct: 63 EAPLYEIFSQENLEDNDVSDILKLLALQAEENLGMVMIFTLVTAVQEKLNEIVDQIKTRR 122
Query: 122 EEAEEKRIKAEEAAEQKRFEGTVVTLETFIAWKAKFDKDMAHIIFEEKNKAKEKTAG--K 179
EE ++++ K E AE++ F GT VT+E F+ WKAKFD ++ I ++K +E+ AG K
Sbjct: 123 EEEKKQKEKEAEEAEKQLFHGTPVTIENFLNWKAKFDAELLEI--KKKRMKEEEQAGKNK 180
Query: 180 LTGREMFMQDKSMNESDLKFIEESGDGGLDATESVEVNETLFQDM 224
L+G+++F D +++ SD++F+E++G+ +VEV+E+LFQ+M
Sbjct: 181 LSGKQLFETDHNLDTSDIQFLEDAGN-------NVEVDESLFQEM 218
>sp|O94721|YCF9_SCHPO RWD domain-containing protein C1393.09c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC1393.09c PE=4
SV=1
Length = 215
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 99/195 (50%), Gaps = 19/195 (9%)
Query: 10 EIEALDSIYYGDMEILEKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIE 69
E E L+SIY + + + T PI E + ++ + + Q + YP+E+P ++I
Sbjct: 8 EREILESIYPEEFKCINDSTFEITQPIDREESNCDNPPSLIFTCQLSEAYPDEVPDVKIT 67
Query: 70 NCDNI----DEDVERELKEYLLTQANENLGMVMIFTLVSSAQEWLSTKSDQLKKDKEEAE 125
+ +E++ER LK+ + A E LGM MIF+L S A+E + + + + +A
Sbjct: 68 FSEPHPWLGEEEIER-LKQVVAQNAEECLGMAMIFSLCSVAKEETNAILIEQSQRETQAI 126
Query: 126 EKRIKAEEAAEQKRFEGTVVTLETFIAWKAKFDK-DMAHIIFEEKNKAKEKTA------- 177
E+R + E E K+F GT VT+E+F WK FD + E+++K KE +
Sbjct: 127 EERHRKEAEQENKKFHGTPVTVESFTEWKKGFDAWRNEQLKLEQESKLKEALSAASSSNA 186
Query: 178 ------GKLTGREMF 186
++TGRE+F
Sbjct: 187 RKAILEKRMTGRELF 201
>sp|Q03768|GIR2_YEAST Protein GIR2 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=GIR2 PE=1 SV=1
Length = 265
Score = 67.8 bits (164), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 117/243 (48%), Gaps = 65/243 (26%)
Query: 1 MDYQEEQSNEIEALDSIYYGDMEILEKD-PHV-FTIPIQSE--------CVDDEHQMNCL 50
MDY+EEQ E+E L+SIY ++ I+ + P + F + I+ E + EH + +
Sbjct: 1 MDYKEEQKQELEVLESIYPDELRIINDEYPKIKFEVAIKLELDTGDSTSVLTKEHTI--I 58
Query: 51 LRFQYTPKYPEEIPIIEIE------------------------NCDNIDEDVER-----E 81
F+ YP+E +I +E + + + + E
Sbjct: 59 AEFKLPENYPDEPCLISLEAQEVALNDNEEDNEEDEDEVEYDDHGNKVLKKFENLPDLIS 118
Query: 82 LKEYL--LTQANEN-------LGMVMIFTLVSSAQE----WLSTKSDQLKKDKE-EAEEK 127
K YL LT E+ LGM M F L+SS +E W S + ++L+K E EA+E+
Sbjct: 119 FKGYLPELTVQLESQIETDMLLGMQMCFALISSIKERCEQWYSEQLNKLEKQYELEAQER 178
Query: 128 RIKAEEAAEQKRFEGTVVTLETFIAWKAKFDKDMAHIIFEEKNKAKEKTA--GKLTGREM 185
E EQ +F GT VT E+++ W++KF +++ +E+++ + A GKLTG++M
Sbjct: 179 -----EKKEQAKFHGTKVTRESYLEWRSKFRQELK---LDERDQVRRMKAHHGKLTGKQM 230
Query: 186 FMQ 188
F Q
Sbjct: 231 FEQ 233
>sp|Q9HGN1|GCN2_SCHPO Serine/threonine-protein kinase gcn2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=gcn2 PE=2 SV=2
Length = 1576
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 76/157 (48%), Gaps = 25/157 (15%)
Query: 4 QEEQSNEIEALDSIYYGDMEILE-------KDPHVFTIPIQSECVDDEHQMNCLLRFQYT 56
+E Q NEIEAL +I+ D E L+ + HV+ I + S + + L +
Sbjct: 11 KEIQENEIEALKAIFMDDFEELKVRNAWNVTNGHVYCIHLCSRSANSKSIAKLDLCIELG 70
Query: 57 PKYPEEIPIIEIENCDNIDEDVERELKEYLLTQANENLGMVMIFTLVSSAQEWLST---- 112
YP P+I+++N +N+ R L + L T+A + LG MIF L S Q++L+
Sbjct: 71 RSYPYVKPVIKLQNGENVLNSQIRFLLDKLDTKAKDLLGEEMIFELASIVQDYLNDWQSD 130
Query: 113 -----------KSDQLKKDKEEAE---EKRIKAEEAA 135
++ QLK D+E AE + R+K E+ A
Sbjct: 131 LSSQFASLEEERAVQLKHDRERAEVDLQLRLKREKDA 167
>sp|Q9P2K8|E2AK4_HUMAN Eukaryotic translation initiation factor 2-alpha kinase 4 OS=Homo
sapiens GN=EIF2AK4 PE=1 SV=3
Length = 1649
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 9/140 (6%)
Query: 3 YQEEQSNEIEALDSIYYGDMEILEKD--------PHVFTIPIQSECVDDEHQMNCLLRFQ 54
Y + Q +E++AL++IY D + L D P + + +E + LR +
Sbjct: 19 YPQRQDHELQALEAIYGADFQDLRPDACGPVKEPPEINLVLYPQGLTGEEVYVKVDLRVK 78
Query: 55 YTPKYPEEIPIIEIENCDNIDEDVERELKEYLLTQANENLGMVMIFTLVSSAQEWLSTKS 114
P YP+ +P IE++N + + LK L A ++ G VMIF L Q +LS +
Sbjct: 79 CPPTYPDVVPEIELKNAKGLSNESVNLLKSRLEELAKKHCGEVMIFELAYHVQSFLSEHN 138
Query: 115 DQLKKD-KEEAEEKRIKAEE 133
K EE E+R + E+
Sbjct: 139 KPPPKSFHEEMLERRAQEEQ 158
>sp|Q9QZ05|E2AK4_MOUSE Eukaryotic translation initiation factor 2-alpha kinase 4 OS=Mus
musculus GN=Eif2ak4 PE=1 SV=2
Length = 1648
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 73/156 (46%), Gaps = 17/156 (10%)
Query: 3 YQEEQSNEIEALDSIYYGDMEILEKD--------PHVFTIPIQSECVDDEHQMNCLLRFQ 54
Y + Q +E++AL++IY D + L D P + + +E + L+ +
Sbjct: 19 YSQRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLYPQGLAGEEVYVQVELQVK 78
Query: 55 YTPKYPEEIPIIEIENCDNIDEDVERELKEYLLTQANENLGMVMIFTLVSSAQEWLSTKS 114
P YP+ +P IE++N + + LK +L A + G VMIF L Q +LS +
Sbjct: 79 CPPTYPDVVPEIELKNAKGLSNESVNLLKSHLEELAKKQCGEVMIFELAHHVQSFLSEHN 138
Query: 115 ---------DQLKKDKEEAEEKRIKAEEAAEQKRFE 141
+ L++ +E +++ ++A EQ++ E
Sbjct: 139 KPPPKSFHEEMLERQAQEKQQRLLEARRKEEQEQRE 174
>sp|P15442|GCN2_YEAST Serine/threonine-protein kinase GCN2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=GCN2 PE=1 SV=3
Length = 1659
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 67/143 (46%), Gaps = 21/143 (14%)
Query: 3 YQEEQSNEIEALDSIYYGDMEIL-------EKDPHV-FTIPIQSECVDDEH-QMNCLLRF 53
Y E Q NE+EA+ SIY D L +K P + F I ++S VD E + + L F
Sbjct: 11 YYEIQCNELEAIRSIYMDDFTDLTKRKSSWDKQPQIIFEITLRS--VDKEPVESSITLHF 68
Query: 54 QYTPKYPEEIPIIEIENCDNIDEDVERELKEYLLTQANENLGMVMIFTLVSSAQEWL--- 110
TP YP P IE +N N+ + + LK N + G +IF + S QE L
Sbjct: 69 AMTPMYPYTAPEIEFKNVQNVMDSQLQMLKSEFKKIHNTSRGQEIIFEITSFTQEKLDEF 128
Query: 111 -------STKSDQLKKDKEEAEE 126
S + D+L++ KE E+
Sbjct: 129 QNVVNTQSLEDDRLQRIKETKEQ 151
>sp|Q9CPR1|RWDD4_MOUSE RWD domain-containing protein 4 OS=Mus musculus GN=Rwdd4 PE=2 SV=1
Length = 188
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 10/112 (8%)
Query: 1 MDYQEEQSNEIEALDSIYYGDMEILEKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYP 60
M E+Q E+EAL SIY GD E P + Q +D L+ +T YP
Sbjct: 1 MGANEDQEMELEALRSIYEGDNSFRELSP----VSFQYRIGEDGDPKAFLIEVSWTETYP 56
Query: 61 EEIPIIEIENCDNIDEDVERELKEYLLTQANE----NLGMVMIFTLVSSAQE 108
+ P+I + N + +K+ +L + E NLG M +TL A++
Sbjct: 57 QTAPVISMNAFFN--NTISSAVKQSILAKLQEAVEVNLGTAMTYTLFEYAKD 106
>sp|Q569B7|RWDD4_RAT RWD domain-containing protein 4 OS=Rattus norvegicus GN=Rwdd4 PE=2
SV=1
Length = 188
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 10/112 (8%)
Query: 1 MDYQEEQSNEIEALDSIYYGDMEILEKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYP 60
M E+Q E+EAL SIY GD E P F Q +D L+ +T YP
Sbjct: 1 MGANEDQEMELEALRSIYEGDESFRELSPVSF----QYRIGEDGDPKAFLIEISWTETYP 56
Query: 61 EEIPIIEIENCDNIDEDVERELKEYLLTQANE----NLGMVMIFTLVSSAQE 108
+ P+I + N + +K+ +L + E NLG M +TL A++
Sbjct: 57 QTPPVISMNAFFN--NTISSAVKQSILAKLQEAVEVNLGTAMTYTLFEYAKD 106
>sp|Q6NW29|RWDD4_HUMAN RWD domain-containing protein 4 OS=Homo sapiens GN=RWDD4 PE=1 SV=3
Length = 188
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 48/110 (43%), Gaps = 6/110 (5%)
Query: 1 MDYQEEQSNEIEALDSIYYGDMEILEKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYP 60
M E+Q E+EAL SIY GD E P F Q ++ L+ +T YP
Sbjct: 1 MSANEDQEMELEALRSIYEGDESFRELSPVSF----QYRIGENGDPKAFLIEISWTETYP 56
Query: 61 EEIPIIEIENCDN--IDEDVERELKEYLLTQANENLGMVMIFTLVSSAQE 108
+ PI+ + N I V++ + L NLG M +TL A++
Sbjct: 57 QTPPILSMNAFFNNTISSAVKQSILAKLQEAVEANLGTAMTYTLFEYAKD 106
>sp|Q9LX30|GCN2_ARATH Probable serine/threonine-protein kinase GCN2 OS=Arabidopsis
thaliana GN=GCN2 PE=2 SV=2
Length = 1241
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 8 SNEIEALDSIYYGDMEILE--KDPHVFTIPIQSECVD---DEHQMNCLLRFQYTPKYPEE 62
S EI AL +I+ D +++ + P I ++ D ++ ++ +L + P YP +
Sbjct: 36 SEEITALSAIFQEDCKVVSDSRSPPQIAIKLRPYSKDMGYEDTDISAMLIVRCLPGYPYK 95
Query: 63 IPIIEIENCDNIDEDVERELKEYLLTQANENL--GMVMIFTLVSSAQEWLS 111
P ++I + +L L QAN N G VMIF LV +AQE+LS
Sbjct: 96 CPKLQITPEQGLTTADAEKLLSLLEDQANSNAREGRVMIFNLVEAAQEFLS 146
>sp|Q5E9N3|RNF25_BOVIN E3 ubiquitin-protein ligase RNF25 OS=Bos taurus GN=RNF25 PE=2 SV=1
Length = 458
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 9 NEIEALDSIYYGDMEILEKD----PHVFTIPIQSECVDDE-HQMNCL-LRFQYTPKYPEE 62
+E+E L+SIY ++++++ + P I + +D+ Q C L Q +YP E
Sbjct: 18 SEVEVLESIYLDELQVVKGNGRSSPWEIYITLHPATAEDQDSQYVCFTLVLQVPTQYPHE 77
Query: 63 IPIIEIENCDNIDEDVERELKEYLLTQANENLGMVMIFTLVSSAQEWLS 111
+P I I N + ++ ++ + L A LG M++ L+ +E L+
Sbjct: 78 VPQISIRNPRGLSDEQIHKISQALSHVAEAGLGTAMLYELIEKGKEILT 126
>sp|Q9QZR0|RNF25_MOUSE E3 ubiquitin-protein ligase RNF25 OS=Mus musculus GN=Rnf25 PE=1
SV=2
Length = 456
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 55/110 (50%), Gaps = 9/110 (8%)
Query: 9 NEIEALDSIYYGDMEILE---KDP-HVFTI--PIQSECVDDEHQMNCLLRFQYTP-KYPE 61
+E+E L+SIY ++++++ + P +F P +E D Q C P +YP
Sbjct: 18 SEVEVLESIYLDELQVMKGNGRSPWEIFITLHPATAEVQDS--QFVCFTLVLRIPVQYPH 75
Query: 62 EIPIIEIENCDNIDEDVERELKEYLLTQANENLGMVMIFTLVSSAQEWLS 111
E+P I I N + ++ ++ + L A E LG M++ L+ +E L+
Sbjct: 76 EVPQISIRNPRGLSDEQIHKISQALGHVAKEGLGTAMLYELIEKGKEILT 125
>sp|Q96BH1|RNF25_HUMAN E3 ubiquitin-protein ligase RNF25 OS=Homo sapiens GN=RNF25 PE=1
SV=1
Length = 459
Score = 40.0 bits (92), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 6/110 (5%)
Query: 8 SNEIEALDSIYYGDMEILEKD----PHVFTIPIQSECVDDE-HQMNCL-LRFQYTPKYPE 61
+E+E L+SIY ++++++ + P I + +D+ Q C L Q +YP
Sbjct: 17 PSEVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPH 76
Query: 62 EIPIIEIENCDNIDEDVERELKEYLLTQANENLGMVMIFTLVSSAQEWLS 111
E+P I I N + ++ + + L A LG M++ L+ +E L+
Sbjct: 77 EVPQISIRNPRGLSDEQIHTILQVLGHVAKAGLGTAMLYELIEKGKEILT 126
>sp|Q28Y69|ZC3HF_DROPS Zinc finger CCCH domain-containing protein 15 homolog OS=Drosophila
pseudoobscura pseudoobscura GN=GA21225 PE=3 SV=1
Length = 406
Score = 38.5 bits (88), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 10/67 (14%)
Query: 143 TVVTLETFIAWKA-KFDKDMAHIIFEEKNKAKEKTAGK---LTGREMF------MQDKSM 192
T VTLETF+AWK K + A ++ EE+ K + + GK ++GREMF + D +
Sbjct: 239 TRVTLETFLAWKKRKLQEKKAKMVAEEERKKSDFSKGKQFGISGREMFSFNPDLVDDGPI 298
Query: 193 NESDLKF 199
E D F
Sbjct: 299 EEGDAAF 305
>sp|Q7JWR9|ZC3HF_DROME Zinc finger CCCH domain-containing protein 15 homolog OS=Drosophila
melanogaster GN=CG8635 PE=1 SV=1
Length = 404
Score = 37.4 bits (85), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 10/67 (14%)
Query: 143 TVVTLETFIAWKA-KFDKDMAHIIFEEKNKAKEKTAGK---LTGREMF------MQDKSM 192
T VTLE+F+AWK K + A + EE+ K + + GK ++GREMF + D M
Sbjct: 238 TRVTLESFLAWKKRKIAEKKAKLAAEEERKKSDFSKGKQFGISGREMFSFNPDLVDDGPM 297
Query: 193 NESDLKF 199
E D F
Sbjct: 298 EEGDAAF 304
>sp|Q04GN0|IF2_OENOB Translation initiation factor IF-2 OS=Oenococcus oeni (strain ATCC
BAA-331 / PSU-1) GN=infB PE=3 SV=1
Length = 829
Score = 34.7 bits (78), Expect = 0.65, Method: Composition-based stats.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 11/96 (11%)
Query: 118 KKDKEEAEEKRIKAEEAAEQKRFEGTVVTLETFIAWKAKFD-KDMAHIIFEEKNKAKEKT 176
+KD EA E R A++A E++R G VVTL+T + AK D K ++ I+ + + E
Sbjct: 587 EKDAREAGESR--AKKAMEEERNNGAVVTLDTLFSTMAKRDMKTVSLIVKADVQGSVEAL 644
Query: 177 AGKLTGRE--------MFMQDKSMNESDLKFIEESG 204
+ L + + ++NESD+ E SG
Sbjct: 645 SASLKKIKVEGVRVDILHAAVGAINESDINLAEASG 680
>sp|Q6U6G5|ZC3HF_RAT Zinc finger CCCH domain-containing protein 15 OS=Rattus norvegicus
GN=Zc3h15 PE=2 SV=1
Length = 426
Score = 34.3 bits (77), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 32/107 (29%)
Query: 143 TVVTLETFIAWKA--------KFDKDMAHIIFEEKNKAKEKTAGK---LTGREMF----- 186
T +TLE+F+AWK K ++DM E+ KA K AGK ++GRE+F
Sbjct: 248 TKITLESFLAWKKRKRQEKIDKLEQDM------ERRKADFK-AGKALVISGREVFEFRPE 300
Query: 187 -MQDKSMNESDLKFIEESGDGGLDATESVEVNETLFQDMNDLDSFTP 232
+ D D ++I+ G GG + +SV VN+ DL + P
Sbjct: 301 LVNDDDEEADDTRYIQ--GTGGDEVDDSVGVNDI------DLSLYVP 339
>sp|Q04544|POLG_SOUV3 Genome polyprotein OS=Southampton virus (strain GI/Human/United
Kingdom/Southampton/1991) GN=ORF1 PE=1 SV=2
Length = 1788
Score = 33.9 bits (76), Expect = 0.96, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 166 FEEKNKAKEKTAGKLTGREMFMQDKSMNESDLKFIEESGDGGLDATESVEVNETLF 221
+EE K +E+ G + +E +++D+ E +L ++ GDGG+ TE +E+ +F
Sbjct: 991 YEEYKKIREEKGGNYSIQE-YLEDRQRYEEELAEVQAGGDGGIGETE-MEIRHRVF 1044
>sp|Q83883|POLG_NVN68 Genome polyprotein OS=Norwalk virus (strain GI/Human/United
States/Norwalk/1968) GN=ORF1 PE=1 SV=1
Length = 1789
Score = 33.1 bits (74), Expect = 1.7, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 166 FEEKNKAKEKTAGKLTGREMFMQDKSMNESDLKFIEESGDGGLDATESVEVNETLF 221
+EE K +E+ G + +E +++D+ E +L ++ GDGG+ TE +E+ +F
Sbjct: 992 YEEYKKIREEKNGNYSIQE-YLEDRQRYEEELAEVQAGGDGGIGETE-MEIRHRVF 1045
>sp|Q93618|ZC3HF_CAEEL Zinc finger CCCH domain-containing protein 15 homolog
OS=Caenorhabditis elegans GN=F27D4.4 PE=2 SV=3
Length = 374
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 65/118 (55%), Gaps = 16/118 (13%)
Query: 117 LKKDKEEAEEKR---IKAEEAAEQKRF-----EGTVVTLETFIAWKAKFDKDMAHI---- 164
LKK+++ E+++ I EE E++R T +TL+TFIAWK K ++
Sbjct: 204 LKKERKAMEQQKEDEISIEELVEKERAALSSKNLTKLTLQTFIAWKKKKLRERKEKEEAD 263
Query: 165 IFEEKNKAKEKTAGKLTGREMFMQDKSMNESDLKFIEESGDGGLDATESVEVNETLFQ 222
+ E+K K K ++GR++F+ D ++ +D +E+GD ++ E V+ NE +F+
Sbjct: 264 LKEKKEKIKSGKHNGMSGRDLFLYDANLVNND---DDEAGDIEME-KEEVDENEKVFE 317
>sp|Q8WU90|ZC3HF_HUMAN Zinc finger CCCH domain-containing protein 15 OS=Homo sapiens
GN=ZC3H15 PE=1 SV=1
Length = 426
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 26/93 (27%)
Query: 143 TVVTLETFIAWKA--------KFDKDMAHIIFEEKNKAKEKTAGK---LTGREMF----- 186
T +TLE+F+AWK K ++DM E+ KA K AGK ++GRE+F
Sbjct: 248 TKITLESFLAWKKRKRQEKIDKLEQDM------ERRKADFK-AGKALVISGREVFEFRPE 300
Query: 187 -MQDKSMNESDLKFIEESGDGGLDATESVEVNE 218
+ D D ++ + G GG + +SV VN+
Sbjct: 301 LVNDDDEEADDTRYTQ--GTGGDEVDDSVSVND 331
>sp|Q3TIV5|ZC3HF_MOUSE Zinc finger CCCH domain-containing protein 15 OS=Mus musculus
GN=Zc3h15 PE=1 SV=2
Length = 426
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 26/93 (27%)
Query: 143 TVVTLETFIAWKA--------KFDKDMAHIIFEEKNKAKEKTAGK---LTGREMF----- 186
T +TLE+F+AWK K ++DM E+ KA K AGK ++GRE+F
Sbjct: 248 TKITLESFLAWKKRKRQEKIDKLEQDM------ERRKADFK-AGKALVISGREVFEFRPE 300
Query: 187 -MQDKSMNESDLKFIEESGDGGLDATESVEVNE 218
+ D D ++I+ G GG + +S+ VN+
Sbjct: 301 LVNDDDEEADDTRYIQ--GTGGDEVDDSMGVND 331
>sp|A9UMG5|IMPTB_XENTR Protein IMPACT-B OS=Xenopus tropicalis GN=impact-B PE=2 SV=1
Length = 317
Score = 31.6 bits (70), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 3/110 (2%)
Query: 5 EEQSNEIEALDSIYYGDMEILEKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIP 64
+ Q EIEAL SIY + ++++ VF I I + + L+ P YP P
Sbjct: 13 QSQIEEIEALSSIYGEEWCVIDEAARVFCIRISET---QQPKWTVCLQIILPPDYPSSAP 69
Query: 65 IIEIENCDNIDEDVERELKEYLLTQANENLGMVMIFTLVSSAQEWLSTKS 114
I N + L L EN G +++ V +E+L+ KS
Sbjct: 70 PIYQINAAWLRGQDRMTLSNSLEEIYVENAGESILYLWVEKIREFLTEKS 119
>sp|Q642J4|IMPCT_DANRE Protein IMPACT OS=Danio rerio GN=impact PE=2 SV=1
Length = 317
Score = 31.6 bits (70), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 3/110 (2%)
Query: 5 EEQSNEIEALDSIYYGDMEILEKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIP 64
+ Q EIEAL SIY + ++++ VF I I + + L+ P YP P
Sbjct: 13 QSQIEEIEALSSIYGEEWCVIDEAARVFCIRISET---QQPKWTVCLQIILPPDYPSSAP 69
Query: 65 IIEIENCDNIDEDVERELKEYLLTQANENLGMVMIFTLVSSAQEWLSTKS 114
I N + L L EN G +++ V +E+L+ KS
Sbjct: 70 PIYQINAAWLRGQDRMTLSNSLEEIYVENAGESILYLWVEKIREFLTEKS 119
>sp|A8WMM4|ZC3HF_CAEBR Zinc finger CCCH domain-containing protein 15 homolog
OS=Caenorhabditis briggsae GN=CBG00292 PE=3 SV=2
Length = 374
Score = 31.6 bits (70), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 66/118 (55%), Gaps = 16/118 (13%)
Query: 117 LKKDKEEAEEKR---IKAEEAAEQKRF-----EGTVVTLETFIAWKAKFDKDMAHIIFEE 168
LKKD++ E ++ I EE E++R + T +TL+TF+AWK K K+ +
Sbjct: 202 LKKDRKAMEAQKEDEISIEELVEKERAALNSKDLTKLTLQTFVAWKKKKLKERKEKEEAD 261
Query: 169 KNKAKEK-TAGK---LTGREMFMQDKSMNESDLKFIEESGDGGLDATESVEVNETLFQ 222
KEK +GK ++GR++F+ D ++ +D +E+GD ++ E V+ NE +F+
Sbjct: 262 LKAKKEKIKSGKHNGMSGRDLFLFDANLINND---DDEAGDIEME-KEEVDENEKVFE 315
>sp|Q03F26|TIG_PEDPA Trigger factor OS=Pediococcus pentosaceus (strain ATCC 25745 /
183-1w) GN=tig PE=3 SV=1
Length = 435
Score = 30.4 bits (67), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Query: 74 IDEDVERELKEYLLTQANENLGMVMIFTLVSSAQEWLSTKSDQLKKDKEEAEEKRIK 130
++EDV+R++ +YL + + M F L S++ DQL+ E E R+K
Sbjct: 310 LNEDVDRQVNQYLANMQQQGISPEMYFQLTGSSE-------DQLRDQLREGAENRVK 359
>sp|A5U874|Y3439_MYCTA Putative S-adenosyl-L-methionine-dependent methyltransferase
MRA_3439 OS=Mycobacterium tuberculosis (strain ATCC
25177 / H37Ra) GN=MRA_3439 PE=3 SV=2
Length = 306
Score = 30.4 bits (67), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 24/112 (21%)
Query: 82 LKEYLLTQANENLGMVMIFTLVSSAQEWLSTKSDQLKKDKEEAEEKRIKAEEAAEQKRFE 141
L YL Q + L + T +S+ L+T+S L D E +EK+++ + AAE R
Sbjct: 185 LLSYLPPQGQDRL--LDAITALSAPDSRLATQS-PLVLDLAEEDEKKMRMKSAAEAWRER 241
Query: 142 GTVVTLETFIAWKAKFDKDMAHII-FEEKNKAKEKTAGK------LTGREMF 186
G FD D+ +I F+++N + AG TG+E+F
Sbjct: 242 G--------------FDLDLTELIYFDQRNDVADYLAGSGWQVTTSTGKELF 279
>sp|Q50726|Y3399_MYCTU Putative S-adenosyl-L-methionine-dependent methyltransferase
Rv3399/MT3507 OS=Mycobacterium tuberculosis GN=Rv3399
PE=3 SV=2
Length = 306
Score = 30.4 bits (67), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 24/112 (21%)
Query: 82 LKEYLLTQANENLGMVMIFTLVSSAQEWLSTKSDQLKKDKEEAEEKRIKAEEAAEQKRFE 141
L YL Q + L + T +S+ L+T+S L D E +EK+++ + AAE R
Sbjct: 185 LLSYLPPQGQDRL--LDAITALSAPDSRLATQS-PLVLDLAEEDEKKMRMKSAAEAWRER 241
Query: 142 GTVVTLETFIAWKAKFDKDMAHII-FEEKNKAKEKTAGK------LTGREMF 186
G FD D+ +I F+++N + AG TG+E+F
Sbjct: 242 G--------------FDLDLTELIYFDQRNDVADYLAGSGWQVTTSTGKELF 279
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.130 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,932,794
Number of Sequences: 539616
Number of extensions: 3654569
Number of successful extensions: 14523
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 205
Number of HSP's that attempted gapping in prelim test: 14274
Number of HSP's gapped (non-prelim): 383
length of query: 234
length of database: 191,569,459
effective HSP length: 114
effective length of query: 120
effective length of database: 130,053,235
effective search space: 15606388200
effective search space used: 15606388200
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.3 bits)