Query psy8772
Match_columns 234
No_of_seqs 197 out of 1016
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 18:52:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8772.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8772hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4018|consensus 100.0 3.2E-49 6.8E-54 330.7 18.0 213 1-223 1-215 (215)
2 smart00591 RWD domain in RING 99.9 1.5E-22 3.3E-27 153.8 12.2 103 10-112 1-106 (107)
3 PF05773 RWD: RWD domain; Int 99.9 1.4E-21 3.1E-26 149.5 12.0 108 3-110 2-113 (113)
4 KOG4445|consensus 99.5 7.1E-14 1.5E-18 122.9 7.2 104 10-113 2-111 (368)
5 KOG1763|consensus 99.2 1.2E-11 2.5E-16 108.7 5.8 101 122-222 204-311 (343)
6 KOG1814|consensus 99.0 2.1E-09 4.5E-14 98.5 9.4 106 3-115 5-136 (445)
7 KOG1035|consensus 99.0 9.4E-11 2E-15 118.9 -0.0 108 3-114 6-117 (1351)
8 COG5252 Uncharacterized conser 97.2 0.00033 7.2E-09 60.5 4.0 72 126-197 193-267 (299)
9 KOG0309|consensus 97.1 0.006 1.3E-07 60.5 11.6 101 8-108 426-530 (1081)
10 PTZ00390 ubiquitin-conjugating 96.0 0.064 1.4E-06 43.7 9.3 71 1-71 1-73 (152)
11 KOG0416|consensus 95.4 0.48 1E-05 39.3 12.0 99 10-114 9-111 (189)
12 PLN00172 ubiquitin conjugating 95.3 0.17 3.7E-06 40.9 9.3 66 6-71 5-72 (147)
13 PF00179 UQ_con: Ubiquitin-con 95.1 0.11 2.4E-06 41.2 7.3 64 8-71 3-69 (140)
14 cd00195 UBCc Ubiquitin-conjuga 94.7 0.25 5.3E-06 39.3 8.5 63 8-70 5-69 (141)
15 smart00212 UBCc Ubiquitin-conj 93.8 0.47 1E-05 37.8 8.3 63 9-71 5-70 (145)
16 KOG0418|consensus 93.5 0.23 5E-06 41.7 6.2 69 25-93 31-102 (200)
17 COG5078 Ubiquitin-protein liga 93.2 0.71 1.5E-05 37.8 8.4 105 5-112 8-117 (153)
18 KOG0417|consensus 92.6 1.4 3.1E-05 35.7 9.3 41 30-70 31-71 (148)
19 KOG0419|consensus 91.7 1.1 2.3E-05 35.8 7.4 27 45-71 49-75 (152)
20 KOG0420|consensus 89.7 1.3 2.7E-05 36.9 6.4 64 31-95 61-126 (184)
21 KOG0421|consensus 86.2 2 4.4E-05 34.7 5.4 47 45-91 74-122 (175)
22 KOG0427|consensus 86.1 5.7 0.00012 31.7 7.8 66 6-71 19-85 (161)
23 KOG0425|consensus 85.5 2.2 4.7E-05 35.0 5.4 44 30-73 36-79 (171)
24 KOG0422|consensus 84.1 4.5 9.8E-05 32.6 6.5 42 28-70 31-72 (153)
25 PF08694 UFC1: Ubiquitin-fold 80.6 1.4 3E-05 35.6 2.5 28 46-73 74-101 (161)
26 KOG3299|consensus 80.5 1.4 3E-05 37.6 2.6 57 58-116 2-58 (206)
27 KOG0896|consensus 77.4 2.4 5.1E-05 33.9 2.8 27 46-72 55-81 (138)
28 PRK02220 4-oxalocrotonate taut 77.4 6.1 0.00013 26.3 4.6 35 63-97 1-35 (61)
29 PF05743 UEV: UEV domain; Int 76.6 3.4 7.5E-05 32.2 3.6 28 46-73 47-74 (121)
30 PF06113 BRE: Brain and reprod 75.0 5.1 0.00011 36.8 4.7 62 5-72 269-331 (333)
31 PRK02289 4-oxalocrotonate taut 74.0 8.2 0.00018 26.0 4.5 35 63-97 1-35 (60)
32 PRK00745 4-oxalocrotonate taut 73.2 9.5 0.0002 25.4 4.7 36 63-98 1-36 (62)
33 KOG0424|consensus 70.8 8.3 0.00018 31.3 4.5 40 31-70 40-79 (158)
34 PF14461 Prok-E2_B: Prokaryoti 69.9 7 0.00015 30.8 3.9 27 46-72 35-61 (133)
35 TIGR00013 taut 4-oxalocrotonat 66.6 15 0.00033 24.5 4.6 34 64-97 1-35 (63)
36 cd00491 4Oxalocrotonate_Tautom 65.1 17 0.00036 23.7 4.5 34 64-97 1-34 (58)
37 KOG0894|consensus 63.9 7 0.00015 33.8 2.9 25 49-73 54-78 (244)
38 PRK01964 4-oxalocrotonate taut 63.8 17 0.00038 24.4 4.5 35 63-97 1-35 (64)
39 KOG0428|consensus 61.8 23 0.00051 31.2 5.8 24 49-72 59-82 (314)
40 PF01361 Tautomerase: Tautomer 60.7 15 0.00033 24.3 3.7 34 64-97 1-34 (60)
41 KOG0426|consensus 55.4 9.8 0.00021 30.4 2.2 22 49-70 54-75 (165)
42 KOG0895|consensus 53.6 12 0.00026 39.2 3.1 26 46-71 897-922 (1101)
43 PF15594 Imm30: Immunity prote 53.5 29 0.00063 26.8 4.7 46 11-65 6-51 (124)
44 PRK01271 4-oxalocrotonate taut 52.7 33 0.00072 24.6 4.5 35 63-97 1-36 (76)
45 PF14462 Prok-E2_E: Prokaryoti 48.9 17 0.00036 28.7 2.6 24 45-68 40-64 (122)
46 PF09606 Med15: ARC105 or Med1 47.5 6.2 0.00013 40.4 0.0 58 51-112 718-776 (799)
47 KOG3357|consensus 40.3 21 0.00045 28.5 1.9 28 46-73 77-104 (167)
48 KOG0897|consensus 38.4 31 0.00067 26.9 2.6 25 47-71 11-35 (122)
49 COG1942 Uncharacterized protei 38.2 78 0.0017 22.3 4.5 35 63-97 1-36 (69)
50 PF14552 Tautomerase_2: Tautom 33.0 1.1E+02 0.0023 22.2 4.6 44 53-96 14-62 (82)
51 PF07141 Phage_term_sma: Putat 31.8 50 0.0011 26.5 2.9 50 140-189 38-91 (174)
52 PF09765 WD-3: WD-repeat regio 30.4 1.2E+02 0.0026 27.4 5.4 40 26-71 122-161 (291)
53 KOG0895|consensus 27.3 1.4E+02 0.003 31.8 5.8 24 48-71 330-353 (1101)
54 PF04036 DUF372: Domain of unk 25.4 23 0.00049 22.1 -0.1 15 138-152 16-30 (38)
55 KOG4274|consensus 24.6 3.9E+02 0.0085 26.7 8.0 54 51-109 663-716 (742)
56 COG3657 Uncharacterized protei 20.9 2E+02 0.0043 21.8 4.1 23 143-165 5-27 (100)
No 1
>KOG4018|consensus
Probab=100.00 E-value=3.2e-49 Score=330.73 Aligned_cols=213 Identities=41% Similarity=0.625 Sum_probs=187.1
Q ss_pred CChHHHHHHHHHHHHhhcCCCe-eeccCCCcEEEEEeccCCCCCCCcc-eEEEEEEeCCCCCCCCCeEEEecCCCCCHHH
Q psy8772 1 MDYQEEQSNEIEALDSIYYGDM-EILEKDPHVFTIPIQSECVDDEHQM-NCLLRFQYTPKYPEEIPIIEIENCDNIDEDV 78 (234)
Q Consensus 1 M~~~EeQ~~ElEaLeSIY~de~-~~~~~~p~~f~I~i~~~~~~~~~~~-~l~L~~~~p~~YP~~~P~i~l~~~~~L~~~~ 78 (234)
||+.|+|++|+|||+|||||+| ++.+..|++|+|.|....+..+++. ++.|.|++|++||+++|.|.+....++....
T Consensus 1 Ms~~EeQe~E~EaLeSIY~de~~~i~~~~~~~f~v~iq~e~~e~d~~~~~~~l~~s~tEnYPDe~Pli~~~~~~~~~~~~ 80 (215)
T KOG4018|consen 1 MSQYEEQEEELEALESIYPDEFKHINSEDPPIFEVTIQYEEGENDEPKGSFILVFSLTENYPDEAPLIEAFENENLEDAE 80 (215)
T ss_pred CCcHHHHHHHHHHHHHhccchhhhhhccCCccceeeeecccccCCCccccEEEEEEccCCCCCCCcceeccccccccHHH
Confidence 9977999999999999999999 6667788889999988776545555 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhHHHhHHhHHHHHHHHHHHHHHHHhhccCCcccCHhhHHHhHHhHH
Q psy8772 79 ERELKEYLLTQANENLGMVMIFTLVSSAQEWLSTKSDQLKKDKEEAEEKRIKAEEAAEQKRFEGTVVTLETFIAWKAKFD 158 (234)
Q Consensus 79 ~~~L~~~L~~~~ee~lG~~mIf~lv~~lqE~l~~~~~~~~~~~~~~~~~~~~~~~e~e~~~~~gT~VT~E~F~~Wk~~f~ 158 (234)
+..|+..|...+++|+||+|||+||+.+|++|.+++++.+.+ +.++...++.+++++++|+|||||+++|++||.+|+
T Consensus 81 i~~i~~~l~~~aeenLGmaMiftLvss~ke~l~e~~~q~~~~--e~~e~~~~~~ee~e~~kfhgt~VT~esfl~Wk~~fe 158 (215)
T KOG4018|consen 81 IEGILEKLQQEAEENLGMAMIFTLVSSAKEELNEIVEQQKAA--EQREQEAREAEEEERKKFHGTPVTLESFLEWKLKFE 158 (215)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhccccCCceehhhhHHHHHhhh
Confidence 999999999999999999999999999999999999999888 566677778889999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHhhhcCCCCchhhhccCCCCCcchHHHhhhhCCCCCCCCCceeeehhcccc
Q psy8772 159 KDMAHIIFEEKNKAKEKTAGKLTGREMFMQDKSMNESDLKFIEESGDGGLDATESVEVNETLFQD 223 (234)
Q Consensus 159 ~e~~~~~~~~~~~~~~~~~~~ltGrqlFe~~~~l~~sd~~~~~~~~~~~~~~~~~v~vd~~lf~~ 223 (234)
+++...+... +++.....+++||||+|++|+.+..+|..+.. +.+++|++|+++|+|
T Consensus 159 ~el~~~~~k~-~~~~~~~~~k~tgRQ~f~~d~~~~~~~~~~~~-------da~~~~e~~e~~f~d 215 (215)
T KOG4018|consen 159 EELLQIKAKV-KKRLQALAKKLTGRQLFETDHKGDRSDIWNLV-------DAVKDVEIDESLFQD 215 (215)
T ss_pred hhhhhhhhhh-hhHHHHHhhhHHHHHHHHhcccCChhhhHHhh-------hhhhhhhcchhhccC
Confidence 9985554211 11122357999999999999999999988766 467888899999985
No 2
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=99.89 E-value=1.5e-22 Score=153.81 Aligned_cols=103 Identities=36% Similarity=0.584 Sum_probs=92.3
Q ss_pred HHHHHHhhcCCCeeeccCCCc--EEEEEeccCCCC-CCCcceEEEEEEeCCCCCCCCCeEEEecCCCCCHHHHHHHHHHH
Q psy8772 10 EIEALDSIYYGDMEILEKDPH--VFTIPIQSECVD-DEHQMNCLLRFQYTPKYPEEIPIIEIENCDNIDEDVERELKEYL 86 (234)
Q Consensus 10 ElEaLeSIY~de~~~~~~~p~--~f~I~i~~~~~~-~~~~~~l~L~~~~p~~YP~~~P~i~l~~~~~L~~~~~~~L~~~L 86 (234)
|++||+|||++++..++..+. .|+|++.+.... ....+++.|+|.+|++||..+|.|.+.+..||+...+..|...|
T Consensus 1 EieaL~sIy~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~~~~~~~l~~~~~~~l~~~l 80 (107)
T smart00591 1 ELEALESIYPEDFEVIDEDARIPEITIKLSPSSDEGEDQYVSLTLQVKLPENYPDEAPPISLLNSEGLSDEQLAELLKKL 80 (107)
T ss_pred ChHHHHhhccceeEEecCCCCccEEEEEEecCCCCCCccceEEEEEEECCCCCCCCCCCeEEECCCCCCHHHHHHHHHHH
Confidence 799999999999988877655 888988765431 24578999999999999999999999998899999999999999
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHHHH
Q psy8772 87 LTQANENLGMVMIFTLVSSAQEWLST 112 (234)
Q Consensus 87 ~~~~ee~lG~~mIf~lv~~lqE~l~~ 112 (234)
.++++++.|++|||++++++|+++.+
T Consensus 81 ~~~~~e~~g~~~if~~v~~~~e~l~~ 106 (107)
T smart00591 81 EEIAEENLGEVMIFELVEKLQEFLSE 106 (107)
T ss_pred HHHHHHhCCCEEhhHHHHHHHHHHhc
Confidence 99999999999999999999999975
No 3
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=99.87 E-value=1.4e-21 Score=149.52 Aligned_cols=108 Identities=33% Similarity=0.467 Sum_probs=87.8
Q ss_pred hHHHHHHHHHHHHhhcCCCe-eeccCCCcEEEEEeccC--CCCCCCcceEEEEEEeCCCCCCCCCeEEEecCCCCCHHHH
Q psy8772 3 YQEEQSNEIEALDSIYYGDM-EILEKDPHVFTIPIQSE--CVDDEHQMNCLLRFQYTPKYPEEIPIIEIENCDNIDEDVE 79 (234)
Q Consensus 3 ~~EeQ~~ElEaLeSIY~de~-~~~~~~p~~f~I~i~~~--~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~~~L~~~~~ 79 (234)
+.+.|.+|++||+|||++++ ......+..+++++.+. .......+.+.|+|+||++||..+|.|.+.+..++.....
T Consensus 2 ~~e~~~~EieaL~sIy~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~~~~~~~~ 81 (113)
T PF05773_consen 2 CEEQQEEEIEALQSIYPDDFIEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPKNSRNEQI 81 (113)
T ss_dssp HHHHHHHHHHHHHHHSSSSESSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEESSSHCHHH
T ss_pred CHHHHHHHHHHHHHHcCCCccccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCCCCCHHHH
Confidence 57899999999999999998 33344567888888432 2223567899999999999999999999988877777999
Q ss_pred HHHHHHHHHHHHhcC-CchHHHHHHHHHHHHH
Q psy8772 80 RELKEYLLTQANENL-GMVMIFTLVSSAQEWL 110 (234)
Q Consensus 80 ~~L~~~L~~~~ee~l-G~~mIf~lv~~lqE~l 110 (234)
..|.+.|...++++. |++|||++++|+|++|
T Consensus 82 ~~l~~~l~~~~~~~~~G~~~i~~ii~~~qe~~ 113 (113)
T PF05773_consen 82 EKLNKELEQIAEENRQGEPCIFQIIEWLQENL 113 (113)
T ss_dssp HHHHHHHHHHHHHSTTTS-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcCHHHHHHHHHHhhC
Confidence 999999999999999 9999999999999986
No 4
>KOG4445|consensus
Probab=99.48 E-value=7.1e-14 Score=122.95 Aligned_cols=104 Identities=16% Similarity=0.209 Sum_probs=86.0
Q ss_pred HHHHHHhhcCCCeeec----cCCCcEEEEEeccCCCC--CCCcceEEEEEEeCCCCCCCCCeEEEecCCCCCHHHHHHHH
Q psy8772 10 EIEALDSIYYGDMEIL----EKDPHVFTIPIQSECVD--DEHQMNCLLRFQYTPKYPEEIPIIEIENCDNIDEDVERELK 83 (234)
Q Consensus 10 ElEaLeSIY~de~~~~----~~~p~~f~I~i~~~~~~--~~~~~~l~L~~~~p~~YP~~~P~i~l~~~~~L~~~~~~~L~ 83 (234)
|.+.+++||.|++.+. +..+.++.+.+.|-+++ ....++|+|.++.|++||.++|.|.|.+++||++.++..|+
T Consensus 2 e~~~~e~~~ld~i~~~~~~~s~~~~~i~~t~hpit~eedesqyvcvtl~m~vs~gYP~esPtvtl~nPRGl~d~~~~~i~ 81 (368)
T KOG4445|consen 2 ESADGEIEALDSIWDGVHVESKLEASIRYTKHPITSEEDESQYVCVTLEMTVSEGYPAESPTVTLSNPRGLGDPEFREIQ 81 (368)
T ss_pred cccchhhHhhhhHhhccCCCCCChhhheeeecccccccccceeEEEEEEEecCCCCCCcCCceEecCCCCCCcHHHHHHH
Confidence 4556666666664433 23345666666665553 35689999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Q psy8772 84 EYLLTQANENLGMVMIFTLVSSAQEWLSTK 113 (234)
Q Consensus 84 ~~L~~~~ee~lG~~mIf~lv~~lqE~l~~~ 113 (234)
..|+.++++|+||||||.|++.++|+|.+.
T Consensus 82 ~~~~~iikq~~g~pii~~lie~~~e~LT~n 111 (368)
T KOG4445|consen 82 RQIQEIIKQNSGMPIICQLIEHCSEFLTEN 111 (368)
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHcccC
Confidence 999999999999999999999999999873
No 5
>KOG1763|consensus
Probab=99.23 E-value=1.2e-11 Score=108.74 Aligned_cols=101 Identities=21% Similarity=0.310 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHhhcc--CCcccCHhhHHHhHHhHHHHHHHHHHHHHhHHHhhhcCCCCchhhhccCCCCCcchHHH
Q psy8772 122 EEAEEKRIKAEEAAEQKRF--EGTVVTLETFIAWKAKFDKDMAHIIFEEKNKAKEKTAGKLTGREMFMQDKSMNESDLKF 199 (234)
Q Consensus 122 ~~~~~~~~~~~~e~e~~~~--~gT~VT~E~F~~Wk~~f~~e~~~~~~~~~~~~~~~~~~~ltGrqlFe~~~~l~~sd~~~ 199 (234)
+...+-..++-|+.+|+++ +.||||.++|.+||.+..+|++...+.....+...++.-||||+||++++.|+.+|+.-
T Consensus 204 ek~~eISlEe~IE~ER~~L~~nlT~~T~e~F~~WKk~k~~er~~k~~~~~~~~k~~gk~~~sGRElF~~~~dl~~dd~~e 283 (343)
T KOG1763|consen 204 EKQDEISLEELIEKERAALGPNLTPLTEETFKAWKKRKIRERKEKLAAEKAERKKVGKSNMSGRELFESNADLVNDDDEE 283 (343)
T ss_pred cccccccHHHHHHHHHHhcCCCCccccHHHHHHHHHhhHHHHHHHHHHHHHHhhhhccCCCchHHHHhhchhhccCchhh
Confidence 3444556667788899876 79999999999999999888877763322222111122299999999999999999644
Q ss_pred hhh-----hCCCCCCCCCceeeehhccc
Q psy8772 200 IEE-----SGDGGLDATESVEVNETLFQ 222 (234)
Q Consensus 200 ~~~-----~~~~~~~~~~~v~vd~~lf~ 222 (234)
.++ +.++.|+.+..-++|.+.|+
T Consensus 284 ~~d~e~~~~~ee~d~~~k~~e~d~~~~d 311 (343)
T KOG1763|consen 284 AGDLEYTEYSEETDEEAKVKEADAPIFD 311 (343)
T ss_pred ccchhhhhhccchhhhhhhhhccccccc
Confidence 331 33444444445567888883
No 6
>KOG1814|consensus
Probab=98.99 E-value=2.1e-09 Score=98.55 Aligned_cols=106 Identities=21% Similarity=0.237 Sum_probs=78.1
Q ss_pred hHHHHHHHHHHHHhhcCCC-eeeccC-----------CCcEEEEEeccCCC----C-C--------CCcceEEEEEEeCC
Q psy8772 3 YQEEQSNEIEALDSIYYGD-MEILEK-----------DPHVFTIPIQSECV----D-D--------EHQMNCLLRFQYTP 57 (234)
Q Consensus 3 ~~EeQ~~ElEaLeSIY~de-~~~~~~-----------~p~~f~I~i~~~~~----~-~--------~~~~~l~L~~~~p~ 57 (234)
.++.|++||+||+||||+. |...+. -|..|.+.+.+... + + ...+++.|.|.||+
T Consensus 5 n~~~qedEL~AL~siy~e~~~~~~~~~~~~~~~ir~ni~v~f~~~~~~~vnie~~s~~~~~f~~~~~~lPpivlkf~LP~ 84 (445)
T KOG1814|consen 5 NRELQEDELEALESIYPENEFRKVSYWEDGEFEIRLNIEVNFEILYSPKVNIEGTSDSMDLFSLPLDHLPPIVLKFHLPN 84 (445)
T ss_pred HHHHHHHHHHHHHHhccccccccccccccccceeEeeeeccceeecccccccccccccccccccccccCCCeeeeeecCC
Confidence 4899999999999999987 554332 12344444444321 0 0 23578999999999
Q ss_pred CCCCCC-CeEEEecCCCCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhHH
Q psy8772 58 KYPEEI-PIIEIENCDNIDEDVERELKEYLLTQANENLGMVMIFTLVSSAQEWLSTKSD 115 (234)
Q Consensus 58 ~YP~~~-P~i~l~~~~~L~~~~~~~L~~~L~~~~ee~lG~~mIf~lv~~lqE~l~~~~~ 115 (234)
.||..+ |.+.| +..||+..++..|... +..|....|.|.+++++--..++.
T Consensus 85 ~YPs~spP~f~l-~s~Wmn~~q~~~lc~~------el~~i~~~~q~m~~l~~~~~s~l~ 136 (445)
T KOG1814|consen 85 DYPSVSPPKFEL-KSYWMNPDQKSALCSK------ELRLIEELNQMMDFLKESTISILN 136 (445)
T ss_pred ccccCCCCceee-ehcccCHHHhhhccch------hhccceeHHHHHHHHHHHHHHHHH
Confidence 999975 55555 6789999998877776 567889999999999987777653
No 7
>KOG1035|consensus
Probab=98.97 E-value=9.4e-11 Score=118.94 Aligned_cols=108 Identities=31% Similarity=0.400 Sum_probs=92.5
Q ss_pred hHHHHHHHHHHHHhhcCCCeeeccCCC----cEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecCCCCCHHH
Q psy8772 3 YQEEQSNEIEALDSIYYGDMEILEKDP----HVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENCDNIDEDV 78 (234)
Q Consensus 3 ~~EeQ~~ElEaLeSIY~de~~~~~~~p----~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~~~L~~~~ 78 (234)
+.+.|.+|+|||.|||+++|+-+...- +.+-|.+..- ....++.|++.+++.||...|.+.+....|+++.+
T Consensus 6 ~~eiQ~~e~ea~k~i~~~d~e~l~~r~~w~~~i~l~~l~s~----~~~~~~~lh~~~~~~yp~~kp~i~lk~~~~~~d~~ 81 (1351)
T KOG1035|consen 6 NYEIQENELEALKAIYMDDFEELKARWAWVCHILLIALRSC----SLKLSGRLHVKCKRKYPYSKPEIKLKDHQGVSDED 81 (1351)
T ss_pred HHHHHHHHHHhhcccccchHHHHHHHHhhhhhhhhhhhhhh----hHHHhhHhhhhhccccCCCCccccccccccchHHH
Confidence 679999999999999999988765321 2333333221 23578999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhH
Q psy8772 79 ERELKEYLLTQANENLGMVMIFTLVSSAQEWLSTKS 114 (234)
Q Consensus 79 ~~~L~~~L~~~~ee~lG~~mIf~lv~~lqE~l~~~~ 114 (234)
+..|...|.+++....|++|||.|.+.+||+|.++.
T Consensus 82 i~~L~~~l~~~~~~~~G~~~i~eLa~~vqefl~~~~ 117 (1351)
T KOG1035|consen 82 IELLSNELTALAKTLRGEVMIAELASIVQEFLKDHQ 117 (1351)
T ss_pred HHHHHHHHHHhhccccccEEeeeHhhhhHHHHhccC
Confidence 999999999999999999999999999999998864
No 8
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=97.23 E-value=0.00033 Score=60.54 Aligned_cols=72 Identities=21% Similarity=0.212 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhhcc--CCcccCHhhHHHhHHhHHHHHHHHHHHHHhHHHhhhcCCCCch-hhhccCCCCCcchH
Q psy8772 126 EKRIKAEEAAEQKRF--EGTVVTLETFIAWKAKFDKDMAHIIFEEKNKAKEKTAGKLTGR-EMFMQDKSMNESDL 197 (234)
Q Consensus 126 ~~~~~~~~e~e~~~~--~gT~VT~E~F~~Wk~~f~~e~~~~~~~~~~~~~~~~~~~ltGr-qlFe~~~~l~~sd~ 197 (234)
+-..++-++-+|.++ ..||||.|+|..|+.-.+-.....+++..-+++..+...+||+ ++|+.+..++-+|.
T Consensus 193 eislEefIE~eR~~L~~~LTP~TeenFk~Wkd~~~~r~lkq~ee~~s~Rk~~gr~~~~k~~e~FEt~~d~~~ddv 267 (299)
T COG5252 193 EISLEEFIELERQSLPEKLTPLTEENFKEWKDGRRLRILKQKEEKESARKVKGRATGTKGVELFETRRDLFKDDV 267 (299)
T ss_pred cccHHHHHHHHhccCCCcCCcccHHHHHHhccchHHHHHHHHHHHHhcccchhhhhhccchhhhhcccccccccc
Confidence 344556677788766 7999999999999975443322221110000001122345555 89999988877664
No 9
>KOG0309|consensus
Probab=97.10 E-value=0.006 Score=60.51 Aligned_cols=101 Identities=13% Similarity=0.188 Sum_probs=76.2
Q ss_pred HHHHHHHHhhcCCC-eeeccCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCC-CCeEEEecCCCCCHHHHHHHHHH
Q psy8772 8 SNEIEALDSIYYGD-MEILEKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEE-IPIIEIENCDNIDEDVERELKEY 85 (234)
Q Consensus 8 ~~ElEaLeSIY~de-~~~~~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~-~P~i~l~~~~~L~~~~~~~L~~~ 85 (234)
.+|+-++--=|+.= |+.++....+++|.|.+.....+..+-+.++|.||.+||.. +|.+.+..+..++..+.+.|.+.
T Consensus 426 geE~S~Ig~k~~nV~fEkidva~Rsctvsln~p~~~~d~y~flrm~V~FP~nYPn~a~P~Fq~e~~s~~t~~~~~~~l~~ 505 (1081)
T KOG0309|consen 426 GEEFSLIGVKIRNVNFEKIDVADRSCTVSLNCPNHRVDDYIFLRMLVKFPANYPNNAAPSFQFENPSTITSTMKAKLLKI 505 (1081)
T ss_pred HhHHhHhhccccccceEeeccccceEEEEecCCCCccccceeEEEEEeccccCCCCCCCceEEecCccccHHHHHHHHHH
Confidence 35666665556543 66666556788888876544335578899999999999997 59999999999999999999999
Q ss_pred HHHHHHhcC--CchHHHHHHHHHHH
Q psy8772 86 LLTQANENL--GMVMIFTLVSSAQE 108 (234)
Q Consensus 86 L~~~~ee~l--G~~mIf~lv~~lqE 108 (234)
|..++.+.+ |.-|+=..+..|--
T Consensus 506 L~~i~~q~v~s~~yClepClr~l~g 530 (1081)
T KOG0309|consen 506 LKDIALQKVKSGQYCLEPCLRQLVG 530 (1081)
T ss_pred HHHHHHHHhhcCchHHHHHHHHHhc
Confidence 999998753 66665555555554
No 10
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=96.02 E-value=0.064 Score=43.70 Aligned_cols=71 Identities=14% Similarity=0.086 Sum_probs=47.2
Q ss_pred CChHHHHHHHHHHHHhhcCCCeeecc--CCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772 1 MDYQEEQSNEIEALDSIYYGDMEILE--KDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC 71 (234)
Q Consensus 1 M~~~EeQ~~ElEaLeSIY~de~~~~~--~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~ 71 (234)
|+-...-..|+..|..--+..+.+.. .+-..+.+.|.+..+..-..-.+.+.|.+|++||..||.+.+...
T Consensus 1 ~~~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~ 73 (152)
T PTZ00390 1 MSISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTK 73 (152)
T ss_pred CcHHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecC
Confidence 55444556788888865555555432 233577777764332112345788999999999999999998663
No 11
>KOG0416|consensus
Probab=95.41 E-value=0.48 Score=39.33 Aligned_cols=99 Identities=15% Similarity=0.172 Sum_probs=64.7
Q ss_pred HHHHHHhhcCCC-eeeccCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC---CCCCHHHHHHHHHH
Q psy8772 10 EIEALDSIYYGD-MEILEKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC---DNIDEDVERELKEY 85 (234)
Q Consensus 10 ElEaLeSIY~de-~~~~~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~---~~L~~~~~~~L~~~ 85 (234)
|.++..-|-.+- .+++.+.-..|.|.+....+..-+.---+++|.+|.+||-.+|.|-+.+. .|+...--...+..
T Consensus 9 d~Dv~KL~~s~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~SGsVCLDV 88 (189)
T KOG0416|consen 9 DTDVMKLLMSDYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEASGSVCLDV 88 (189)
T ss_pred hhHHHHHHhcCCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhccCccHHHH
Confidence 444444444332 55666555788888876544322344568899999999999999877552 34444434456667
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHHhH
Q psy8772 86 LLTQANENLGMVMIFTLVSSAQEWLSTKS 114 (234)
Q Consensus 86 L~~~~ee~lG~~mIf~lv~~lqE~l~~~~ 114 (234)
|++.| .-+|+|+.-..-||-+++
T Consensus 89 iNQtW------Sp~yDL~NIfetfLPQLL 111 (189)
T KOG0416|consen 89 INQTW------SPLYDLVNIFETFLPQLL 111 (189)
T ss_pred Hhhhh------hHHHHHHHHHHHHhHHHh
Confidence 77776 357888887777777765
No 12
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=95.34 E-value=0.17 Score=40.90 Aligned_cols=66 Identities=14% Similarity=0.122 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhhcCCCeee--ccCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772 6 EQSNEIEALDSIYYGDMEI--LEKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC 71 (234)
Q Consensus 6 eQ~~ElEaLeSIY~de~~~--~~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~ 71 (234)
.-..|+..|..--+..+.+ ...+-..+.+.|....+..-..-.+.+.|.+|++||..+|.+.+...
T Consensus 5 Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~ 72 (147)
T PLN00172 5 RIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTK 72 (147)
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecC
Confidence 3446777776543333333 22334677777764332112345789999999999999999998663
No 13
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=95.08 E-value=0.11 Score=41.22 Aligned_cols=64 Identities=14% Similarity=0.168 Sum_probs=41.6
Q ss_pred HHHHHHHHhhcCCCeee--ccC-CCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772 8 SNEIEALDSIYYGDMEI--LEK-DPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC 71 (234)
Q Consensus 8 ~~ElEaLeSIY~de~~~--~~~-~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~ 71 (234)
..|+..|+.--+..+.+ ..+ +...+.+.|.+..+..-..-.+.+.|.+|++||..+|.|.+.+.
T Consensus 3 ~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~ 69 (140)
T PF00179_consen 3 QKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTP 69 (140)
T ss_dssp HHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS
T ss_pred HHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceecccccccccccccccccccccccccc
Confidence 35677776555555443 232 56777777765322113356789999999999999999999763
No 14
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=94.73 E-value=0.25 Score=39.26 Aligned_cols=63 Identities=13% Similarity=0.102 Sum_probs=41.2
Q ss_pred HHHHHHHHhhcCCCeeec--cCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEec
Q psy8772 8 SNEIEALDSIYYGDMEIL--EKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIEN 70 (234)
Q Consensus 8 ~~ElEaLeSIY~de~~~~--~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~ 70 (234)
..|+..|+.--+..+.+. ..+...+.+.|.+..+..-..-.+.+.|.+|++||..+|.|.+.+
T Consensus 5 ~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~ 69 (141)
T cd00195 5 QKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVT 69 (141)
T ss_pred HHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeC
Confidence 356666665555555433 234467777776542211224578899999999999999999965
No 15
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=93.75 E-value=0.47 Score=37.82 Aligned_cols=63 Identities=14% Similarity=0.103 Sum_probs=40.4
Q ss_pred HHHHHHHhhcCCCeeec--cC-CCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772 9 NEIEALDSIYYGDMEIL--EK-DPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC 71 (234)
Q Consensus 9 ~ElEaLeSIY~de~~~~--~~-~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~ 71 (234)
.|+..|..--+..+.+. .. +...+.+.+....+..-....+.+.|.+|++||..+|.+.+...
T Consensus 5 ~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~ 70 (145)
T smart00212 5 KELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITK 70 (145)
T ss_pred HHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCC
Confidence 46666665445555433 22 44566666653222112345789999999999999999998664
No 16
>KOG0418|consensus
Probab=93.54 E-value=0.23 Score=41.73 Aligned_cols=69 Identities=12% Similarity=0.041 Sum_probs=46.4
Q ss_pred ccCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC---CCCCHHHHHHHHHHHHHHHHhc
Q psy8772 25 LEKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC---DNIDEDVERELKEYLLTQANEN 93 (234)
Q Consensus 25 ~~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~---~~L~~~~~~~L~~~L~~~~ee~ 93 (234)
++++...++-+|....+-.-..-.+.|.|++|.+||..||.+.+... .|+|...-......|..+|--.
T Consensus 31 vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwHPnVSs~tGaICLDilkd~Wa~s 102 (200)
T KOG0418|consen 31 VNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWHPNVSSQTGAICLDILKDQWAAS 102 (200)
T ss_pred ccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeecCCCCcccccchhhhhhcccchh
Confidence 33444455555554322112356789999999999999999987653 3567776677777888887544
No 17
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.16 E-value=0.71 Score=37.79 Aligned_cols=105 Identities=11% Similarity=0.040 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHhhcCCCeeec--cC-CCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecCCCCCH--HHH
Q psy8772 5 EEQSNEIEALDSIYYGDMEIL--EK-DPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENCDNIDE--DVE 79 (234)
Q Consensus 5 EeQ~~ElEaLeSIY~de~~~~--~~-~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~~~L~~--~~~ 79 (234)
..-..|++.|+.=-+..+... .+ +-..+.+.|....+..-++-.+.|.+.||++||..||.|.+.+.-+.+. ..-
T Consensus 8 ~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV~~~G 87 (153)
T COG5078 8 KRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNVDPSG 87 (153)
T ss_pred HHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCcCCCC
Confidence 344567777775544444433 11 2245666665433222346688999999999999999999977543221 111
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Q psy8772 80 RELKEYLLTQANENLGMVMIFTLVSSAQEWLST 112 (234)
Q Consensus 80 ~~L~~~L~~~~ee~lG~~mIf~lv~~lqE~l~~ 112 (234)
......|.+.|.= .-.|=+++-.|+..|.+
T Consensus 88 ~vCLdIL~~~WsP---~~~l~sILlsl~slL~~ 117 (153)
T COG5078 88 NVCLDILKDRWSP---VYTLETILLSLQSLLLS 117 (153)
T ss_pred CChhHHHhCCCCc---cccHHHHHHHHHHHHcC
Confidence 2234444444432 22334555555555544
No 18
>KOG0417|consensus
Probab=92.59 E-value=1.4 Score=35.70 Aligned_cols=41 Identities=12% Similarity=0.151 Sum_probs=32.4
Q ss_pred cEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEec
Q psy8772 30 HVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIEN 70 (234)
Q Consensus 30 ~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~ 70 (234)
..|+..|....+..-++-.+.|.|.+|++||-.||.|.+..
T Consensus 31 ~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~T 71 (148)
T KOG0417|consen 31 FHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLT 71 (148)
T ss_pred eeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeec
Confidence 56888887655432345679999999999999999998865
No 19
>KOG0419|consensus
Probab=91.72 E-value=1.1 Score=35.81 Aligned_cols=27 Identities=19% Similarity=0.395 Sum_probs=23.6
Q ss_pred CcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772 45 HQMNCLLRFQYTPKYPEEIPIIEIENC 71 (234)
Q Consensus 45 ~~~~l~L~~~~p~~YP~~~P~i~l~~~ 71 (234)
+...+.|.++|++.||+.||.+.+.+.
T Consensus 49 e~gtFkLtl~FteeYpnkPP~VrFvs~ 75 (152)
T KOG0419|consen 49 EGGTFKLTLEFTEEYPNKPPTVRFVSK 75 (152)
T ss_pred CCceEEEEEEcccccCCCCCeeEeeee
Confidence 356899999999999999999998774
No 20
>KOG0420|consensus
Probab=89.72 E-value=1.3 Score=36.89 Aligned_cols=64 Identities=14% Similarity=0.060 Sum_probs=41.1
Q ss_pred EEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecCCCCCH--HHHHHHHHHHHHHHHhcCC
Q psy8772 31 VFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENCDNIDE--DVERELKEYLLTQANENLG 95 (234)
Q Consensus 31 ~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~~~L~~--~~~~~L~~~L~~~~ee~lG 95 (234)
.|+++|.|..|= -..-.+.+.|+.|+.||.+||.+.....-+-+. .+-+.....|.+-|.=-++
T Consensus 61 ~~elti~PdEGy-Y~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HPNId~~GnVCLnILRedW~P~ln 126 (184)
T KOG0420|consen 61 EFELTITPDEGY-YQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHPNIDLDGNVCLNILREDWRPVLN 126 (184)
T ss_pred eEEEEEccCcce-ecCceEEEEEECCCCCCCCCCeeeeeeccccCCcCCcchHHHHHHHhcCccccc
Confidence 599999887651 123568889999999999999987765332221 1223345556666654343
No 21
>KOG0421|consensus
Probab=86.20 E-value=2 Score=34.71 Aligned_cols=47 Identities=11% Similarity=0.097 Sum_probs=34.0
Q ss_pred CcceEEEEEEeCCCCCCCCCeEEEecCCCCCHH--HHHHHHHHHHHHHH
Q psy8772 45 HQMNCLLRFQYTPKYPEEIPIIEIENCDNIDED--VERELKEYLLTQAN 91 (234)
Q Consensus 45 ~~~~l~L~~~~p~~YP~~~P~i~l~~~~~L~~~--~~~~L~~~L~~~~e 91 (234)
......|...||.+||..+|.|.+.++.+.+.- +-+..+..|.+.|.
T Consensus 74 egl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD~~GnIcLDILkdKWS 122 (175)
T KOG0421|consen 74 EGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVDLSGNICLDILKDKWS 122 (175)
T ss_pred cCcEEEEEEecCCCCCCCCCeeEeeccccCCCccccccchHHHHHHHHH
Confidence 356788889999999999999999887654432 22345566666663
No 22
>KOG0427|consensus
Probab=86.06 E-value=5.7 Score=31.69 Aligned_cols=66 Identities=11% Similarity=0.104 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhhcCCCeeec-cCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772 6 EQSNEIEALDSIYYGDMEIL-EKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC 71 (234)
Q Consensus 6 eQ~~ElEaLeSIY~de~~~~-~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~ 71 (234)
.-+-|+-.++.==|..|..- +++-..+.|-+..-.+---..-...|.|.||+.||-++|.+-+...
T Consensus 19 RLqKEl~e~q~~pP~G~~~~v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~ 85 (161)
T KOG0427|consen 19 RLQKELSEWQNNPPTGFKHRVTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGP 85 (161)
T ss_pred HHHHHHHHHhcCCCCcceeecccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecC
Confidence 34467888887777776543 2333566666654332111245789999999999999999877654
No 23
>KOG0425|consensus
Probab=85.53 E-value=2.2 Score=35.04 Aligned_cols=44 Identities=9% Similarity=0.026 Sum_probs=29.1
Q ss_pred cEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecCCC
Q psy8772 30 HVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENCDN 73 (234)
Q Consensus 30 ~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~~~ 73 (234)
..+.|.|-...+---..--+.-+..||.+||..||.+.+.+..|
T Consensus 36 f~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mw 79 (171)
T KOG0425|consen 36 FEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMW 79 (171)
T ss_pred eEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhc
Confidence 34555544322111234567888999999999999999977443
No 24
>KOG0422|consensus
Probab=84.14 E-value=4.5 Score=32.61 Aligned_cols=42 Identities=14% Similarity=0.176 Sum_probs=31.6
Q ss_pred CCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEec
Q psy8772 28 DPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIEN 70 (234)
Q Consensus 28 ~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~ 70 (234)
+-..++..|-|...- -+.-.+.|.|.+|.+||--||.|.+..
T Consensus 31 nll~wt~llipd~pp-Y~kgaF~l~I~fp~eYPFKPP~i~f~t 72 (153)
T KOG0422|consen 31 NLLKWTGLLIPDKPP-YNKGAFRLEIDFPVEYPFKPPKIKFKT 72 (153)
T ss_pred cceeEEeEecCCCCC-ccCcceEEEeeCCCCCCCCCCeeeeee
Confidence 336777777665431 235679999999999999999998754
No 25
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=80.63 E-value=1.4 Score=35.60 Aligned_cols=28 Identities=25% Similarity=0.447 Sum_probs=17.4
Q ss_pred cceEEEEEEeCCCCCCCCCeEEEecCCC
Q psy8772 46 QMNCLLRFQYTPKYPEEIPIIEIENCDN 73 (234)
Q Consensus 46 ~~~l~L~~~~p~~YP~~~P~i~l~~~~~ 73 (234)
...+.|.|..|.+||.++|.|.+-...|
T Consensus 74 kYEF~~eFdIP~tYP~t~pEi~lPeLdG 101 (161)
T PF08694_consen 74 KYEFDLEFDIPVTYPTTAPEIALPELDG 101 (161)
T ss_dssp EEEEEEEEE--TTTTTS----B-GGGTT
T ss_pred eEEEeeecCCCccCCCCCcceeccccCC
Confidence 4678999999999999999999966554
No 26
>KOG3299|consensus
Probab=80.55 E-value=1.4 Score=37.56 Aligned_cols=57 Identities=16% Similarity=0.233 Sum_probs=42.4
Q ss_pred CCCCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhHHH
Q psy8772 58 KYPEEIPIIEIENCDNIDEDVERELKEYLLTQANENLGMVMIFTLVSSAQEWLSTKSDQ 116 (234)
Q Consensus 58 ~YP~~~P~i~l~~~~~L~~~~~~~L~~~L~~~~ee~lG~~mIf~lv~~lqE~l~~~~~~ 116 (234)
.||+++|+|.-....++...+..-|...+ .+-.+.|..|++.|++.+++.+.....+
T Consensus 2 ~yps~ap~i~e~~~v~~~~~~~~~l~~a~--~~~s~~~~~l~~~~~~~~~~~~~~~~~~ 58 (206)
T KOG3299|consen 2 DYPSSAPTIKELVGVEKELAKRKLLSNAL--VYISEIGDSLFLLWVEDPRDVLNKRASK 58 (206)
T ss_pred CCCCCCCcHhHhhhHHHHHHHHHhhhhhh--HHHHhhhhhhhhhhhccHHHHHHHhHhh
Confidence 69999887665555556666666566666 6667788999999999999999776543
No 27
>KOG0896|consensus
Probab=77.44 E-value=2.4 Score=33.90 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=22.1
Q ss_pred cceEEEEEEeCCCCCCCCCeEEEecCC
Q psy8772 46 QMNCLLRFQYTPKYPEEIPIIEIENCD 72 (234)
Q Consensus 46 ~~~l~L~~~~p~~YP~~~P~i~l~~~~ 72 (234)
..--.|.|.+-++||+.||.+.+.+..
T Consensus 55 nRiysLKI~Cgp~YPe~PP~vrf~tki 81 (138)
T KOG0896|consen 55 NRIYSLKIECGPKYPELPPTVRFGTKI 81 (138)
T ss_pred cceeeEEEecCCCCCCCCceeEEEEEe
Confidence 345688999999999999999876643
No 28
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=77.38 E-value=6.1 Score=26.30 Aligned_cols=35 Identities=17% Similarity=0.285 Sum_probs=31.4
Q ss_pred CCeEEEecCCCCCHHHHHHHHHHHHHHHHhcCCch
Q psy8772 63 IPIIEIENCDNIDEDVERELKEYLLTQANENLGMV 97 (234)
Q Consensus 63 ~P~i~l~~~~~L~~~~~~~L~~~L~~~~ee~lG~~ 97 (234)
.|.|.+....|.+.+++.+|.+.|.+.+.+.+|.+
T Consensus 1 MP~i~i~~~~Grs~eqk~~l~~~it~~l~~~~~~p 35 (61)
T PRK02220 1 MPYVHIKLIEGRTEEQLKALVKDVTAAVSKNTGAP 35 (61)
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 48899987889999999999999999999988876
No 29
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=76.64 E-value=3.4 Score=32.24 Aligned_cols=28 Identities=18% Similarity=0.288 Sum_probs=22.2
Q ss_pred cceEEEEEEeCCCCCCCCCeEEEecCCC
Q psy8772 46 QMNCLLRFQYTPKYPEEIPIIEIENCDN 73 (234)
Q Consensus 46 ~~~l~L~~~~p~~YP~~~P~i~l~~~~~ 73 (234)
...+-+.|.+|.+||..+|.+.+....+
T Consensus 47 ~y~iPi~Iwlp~~yP~~pP~v~v~pt~~ 74 (121)
T PF05743_consen 47 TYNIPICIWLPENYPYSPPIVYVRPTPS 74 (121)
T ss_dssp CEEEEEEEEE-TTTTTSSSEEEE-GCCT
T ss_pred ccceeEEEEEcccCCCCCCEEEEeCCCC
Confidence 4678899999999999999999976543
No 30
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=74.98 E-value=5.1 Score=36.77 Aligned_cols=62 Identities=15% Similarity=0.231 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhhcCCC-eeeccCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecCC
Q psy8772 5 EEQSNEIEALDSIYYGD-MEILEKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENCD 72 (234)
Q Consensus 5 EeQ~~ElEaLeSIY~de-~~~~~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~~ 72 (234)
..+.+=|+||-+.|+.. ++.-+..-...++-.. .....+.+||.+|..+|...|.+.+.+..
T Consensus 269 ~~RrefI~al~~~fg~~vLE~D~~~~~k~s~L~~------~~~F~flvHi~Lp~~FP~~qP~ltlqS~y 331 (333)
T PF06113_consen 269 KKRREFIEALLSHFGRPVLEYDAEFFRKISFLLE------SGDFTFLVHISLPIQFPKDQPSLTLQSVY 331 (333)
T ss_pred HHHHHHHHHHHHhcCCcceeecccccchhhHHhh------cCCeEEEEEEeccCCCCCcCCeEEEEeec
Confidence 34556689999999987 4433322122333221 23478999999999999999999998753
No 31
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=73.98 E-value=8.2 Score=25.96 Aligned_cols=35 Identities=9% Similarity=0.165 Sum_probs=31.2
Q ss_pred CCeEEEecCCCCCHHHHHHHHHHHHHHHHhcCCch
Q psy8772 63 IPIIEIENCDNIDEDVERELKEYLLTQANENLGMV 97 (234)
Q Consensus 63 ~P~i~l~~~~~L~~~~~~~L~~~L~~~~ee~lG~~ 97 (234)
.|.+.+.-..|.+.+++..|.+.|.+.+.+.+|.|
T Consensus 1 MP~i~i~~~~Grs~EqK~~L~~~it~a~~~~~~~p 35 (60)
T PRK02289 1 MPFVRIDLFEGRSQEQKNALAREVTEVVSRIAKAP 35 (60)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 48889988889999999999999999998888775
No 32
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=73.23 E-value=9.5 Score=25.44 Aligned_cols=36 Identities=25% Similarity=0.305 Sum_probs=31.6
Q ss_pred CCeEEEecCCCCCHHHHHHHHHHHHHHHHhcCCchH
Q psy8772 63 IPIIEIENCDNIDEDVERELKEYLLTQANENLGMVM 98 (234)
Q Consensus 63 ~P~i~l~~~~~L~~~~~~~L~~~L~~~~ee~lG~~m 98 (234)
.|.|.+....|.+.+++..|.+.|.+.+.+.+|.+-
T Consensus 1 MP~i~I~~~~grs~eqk~~l~~~it~~l~~~~~~p~ 36 (62)
T PRK00745 1 MPTFHIELFEGRTVEQKRKLVEEITRVTVETLGCPP 36 (62)
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHcCCCh
Confidence 488999888889999999999999999988888663
No 33
>KOG0424|consensus
Probab=70.82 E-value=8.3 Score=31.26 Aligned_cols=40 Identities=13% Similarity=0.110 Sum_probs=26.7
Q ss_pred EEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEec
Q psy8772 31 VFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIEN 70 (234)
Q Consensus 31 ~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~ 70 (234)
.....|....+..-+.--..|.+.||.+||..||.+.+..
T Consensus 40 ~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~ 79 (158)
T KOG0424|consen 40 NWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKP 79 (158)
T ss_pred EEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCC
Confidence 3333444333322334567889999999999999988754
No 34
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=69.87 E-value=7 Score=30.79 Aligned_cols=27 Identities=19% Similarity=0.272 Sum_probs=23.5
Q ss_pred cceEEEEEEeCCCCCCCCCeEEEecCC
Q psy8772 46 QMNCLLRFQYTPKYPEEIPIIEIENCD 72 (234)
Q Consensus 46 ~~~l~L~~~~p~~YP~~~P~i~l~~~~ 72 (234)
...+.|.+.+|+.||..+|.|.+....
T Consensus 35 ~~~~~l~l~~p~~FP~~pp~v~l~d~~ 61 (133)
T PF14461_consen 35 GGPFPLRLVFPDDFPYLPPRVYLEDPK 61 (133)
T ss_pred CeEEEEEEEECCcccCcCCEEEecCcc
Confidence 368899999999999999999997654
No 35
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=66.58 E-value=15 Score=24.47 Aligned_cols=34 Identities=24% Similarity=0.338 Sum_probs=29.5
Q ss_pred CeEEEecC-CCCCHHHHHHHHHHHHHHHHhcCCch
Q psy8772 64 PIIEIENC-DNIDEDVERELKEYLLTQANENLGMV 97 (234)
Q Consensus 64 P~i~l~~~-~~L~~~~~~~L~~~L~~~~ee~lG~~ 97 (234)
|.+.+.-. .|.+.+++..|...|.+.+.+.+|.+
T Consensus 1 P~i~i~i~~~grt~eqK~~l~~~it~~l~~~lg~~ 35 (63)
T TIGR00013 1 PFVNIYILKEGRTDEQKRQLIEGVTEAMAETLGAN 35 (63)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 67777766 78999999999999999999888876
No 36
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=65.12 E-value=17 Score=23.69 Aligned_cols=34 Identities=26% Similarity=0.377 Sum_probs=29.4
Q ss_pred CeEEEecCCCCCHHHHHHHHHHHHHHHHhcCCch
Q psy8772 64 PIIEIENCDNIDEDVERELKEYLLTQANENLGMV 97 (234)
Q Consensus 64 P~i~l~~~~~L~~~~~~~L~~~L~~~~ee~lG~~ 97 (234)
|.+.+.-..|-+.+++..|.+.|.+.+.+.+|.+
T Consensus 1 P~i~i~~~~grt~eqk~~l~~~i~~~l~~~~g~~ 34 (58)
T cd00491 1 PFVQIYILEGRTDEQKRELIERVTEAVSEILGAP 34 (58)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 7788877778889999999999999998888765
No 37
>KOG0894|consensus
Probab=63.95 E-value=7 Score=33.79 Aligned_cols=25 Identities=20% Similarity=0.409 Sum_probs=20.2
Q ss_pred EEEEEEeCCCCCCCCCeEEEecCCC
Q psy8772 49 CLLRFQYTPKYPEEIPIIEIENCDN 73 (234)
Q Consensus 49 l~L~~~~p~~YP~~~P~i~l~~~~~ 73 (234)
-.=++.||++||-.||.|+...+.|
T Consensus 54 YhGkl~FP~eyP~KPPaI~MiTPNG 78 (244)
T KOG0894|consen 54 YHGKLIFPPEYPFKPPAITMITPNG 78 (244)
T ss_pred eeeEEeCCCCCCCCCCeeEEECCCC
Confidence 3446679999999999999877654
No 38
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=63.82 E-value=17 Score=24.45 Aligned_cols=35 Identities=17% Similarity=0.286 Sum_probs=30.5
Q ss_pred CCeEEEecCCCCCHHHHHHHHHHHHHHHHhcCCch
Q psy8772 63 IPIIEIENCDNIDEDVERELKEYLLTQANENLGMV 97 (234)
Q Consensus 63 ~P~i~l~~~~~L~~~~~~~L~~~L~~~~ee~lG~~ 97 (234)
.|.|.+.-..|.+.+++..|.+.|.+.+.+.+|.|
T Consensus 1 MP~v~i~l~~grt~eqk~~l~~~it~~l~~~lg~p 35 (64)
T PRK01964 1 MPIVQIQLLEGRPEEKIKNLIREVTEAISATLDVP 35 (64)
T ss_pred CCEEEEEEeCCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 48888877778899999999999999998888876
No 39
>KOG0428|consensus
Probab=61.77 E-value=23 Score=31.22 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=19.0
Q ss_pred EEEEEEeCCCCCCCCCeEEEecCC
Q psy8772 49 CLLRFQYTPKYPEEIPIIEIENCD 72 (234)
Q Consensus 49 l~L~~~~p~~YP~~~P~i~l~~~~ 72 (234)
..=.|.+|++||-.||.|-+..+.
T Consensus 59 YHGRI~lPadYPmKPPs~iLLTpN 82 (314)
T KOG0428|consen 59 YHGRIVLPADYPMKPPSIILLTPN 82 (314)
T ss_pred eeeeEecCCCCCCCCCeEEEEcCC
Confidence 344678999999999998876643
No 40
>PF01361 Tautomerase: Tautomerase enzyme; InterPro: IPR004370 4-Oxalocrotonate tautomerase (4-OT) catalyzes the isomerisation of beta,gamma-unsaturated enones to their alpha,beta-isomers. The enzyme is part of a plasmid-encoded pathway, which enables bacteria harbouring the plasmid to use various aromatic hydrocarbons as their sole sources of carbon and energy. The enzyme is a barrel-shaped hexamer, which can be viewed as a trimer of dimers. The hexamer contains a hydrophobic core formed by three beta-sheets and surrounded by three pairs of alpha-helices. Each 4-OT monomer of 62 amino acids has a relatively simple beta-alpha-beta fold as described by the structure of the enzyme from Pseudomonas putida []. The monomer begins with a conserved proline at the start of a beta-strand, followed by an alpha-helix and a 310 helix preceding a second parallel beta-strand, and ends with a beta-hairpin near the C terminus. The dimer results from antiparallel interactions between the beta-sheets and alpha-helices of the two monomers, forming a four-stranded beta-sheet with antiparallel alpha-helices on one side, creating two active sites, one at each end of the beta-sheet. Three dimers further associate to form a hexamer by the interactions of the strands of the C-terminal beta-hairpin loops with the edges of the four-stranded beta-sheets of neighbouring dimers, creating a series of cross-links that stabilise the hexamer Pro-1 of the mature protein functions as the general base while Arg-39 and an ordered water molecule each provide a hydrogen bond to the C-2 oxygen of substrate. Arg-39 plays an additional role in the binding of the C-1 carboxylate group. Arg-11 participates both in substrate binding and in catalysis. It interacts with the C-6 carboxylate group, thereby holding the substrate in place and drawing electron density to the C-5 position. The hydrophobic nature of the active site, which lowers the pKa of Pro-1 and provides a favourable environment for catalysis, is largely maintained by Phe-50. Because several Arg residues located near the active site are not conserved among all members of this family and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.; GO: 0016853 isomerase activity, 0006725 cellular aromatic compound metabolic process; PDB: 4OTA_H 4OTC_G 4OTB_J 2FM7_A 1BJP_B 1S0Y_K 3EJ9_E 3EJ7_K 3EJ3_I 3MB2_A ....
Probab=60.68 E-value=15 Score=24.30 Aligned_cols=34 Identities=29% Similarity=0.394 Sum_probs=27.3
Q ss_pred CeEEEecCCCCCHHHHHHHHHHHHHHHHhcCCch
Q psy8772 64 PIIEIENCDNIDEDVERELKEYLLTQANENLGMV 97 (234)
Q Consensus 64 P~i~l~~~~~L~~~~~~~L~~~L~~~~ee~lG~~ 97 (234)
|.|.+.-..|.+.+++..|.+.|.+.+.+.+|.+
T Consensus 1 P~I~i~~~~g~~~e~K~~l~~~it~~~~~~lg~~ 34 (60)
T PF01361_consen 1 PFITIKIPEGRTAEQKRELAEAITDAVVEVLGIP 34 (60)
T ss_dssp -EEEEEEESTS-HHHHHHHHHHHHHHHHHHHTS-
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 7788888888899999999999999998887765
No 41
>KOG0426|consensus
Probab=55.35 E-value=9.8 Score=30.37 Aligned_cols=22 Identities=18% Similarity=0.360 Sum_probs=17.8
Q ss_pred EEEEEEeCCCCCCCCCeEEEec
Q psy8772 49 CLLRFQYTPKYPEEIPIIEIEN 70 (234)
Q Consensus 49 l~L~~~~p~~YP~~~P~i~l~~ 70 (234)
+--.++||.+||-.||.+.+..
T Consensus 54 fpA~l~FP~DYPLsPPkm~Ftc 75 (165)
T KOG0426|consen 54 FPARLSFPLDYPLSPPKMRFTC 75 (165)
T ss_pred cceeeecCCCCCCCCCceeeec
Confidence 4456779999999999988754
No 42
>KOG0895|consensus
Probab=53.60 E-value=12 Score=39.25 Aligned_cols=26 Identities=19% Similarity=0.491 Sum_probs=22.3
Q ss_pred cceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772 46 QMNCLLRFQYTPKYPEEIPIIEIENC 71 (234)
Q Consensus 46 ~~~l~L~~~~p~~YP~~~P~i~l~~~ 71 (234)
.-.+.+.|.||++||.+||.+...+.
T Consensus 897 ~~~f~fd~~~~~~yp~~pp~~~~~s~ 922 (1101)
T KOG0895|consen 897 DGLFFFDFQFPQDYPSSPPLVHYHSG 922 (1101)
T ss_pred cceEEEEeecCCCCCCCCCceEeecC
Confidence 35688999999999999999988663
No 43
>PF15594 Imm30: Immunity protein 30
Probab=53.53 E-value=29 Score=26.85 Aligned_cols=46 Identities=17% Similarity=0.308 Sum_probs=28.6
Q ss_pred HHHHHhhcCCCeeeccCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCe
Q psy8772 11 IEALDSIYYGDMEILEKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPI 65 (234)
Q Consensus 11 lEaLeSIY~de~~~~~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~ 65 (234)
=++|.+||+........ ...+|++.-. ...++|+| +...+|..+|.
T Consensus 6 ~~~i~~~fg~~P~f~d~--ei~~v~l~r~------~~~l~i~~-~~~~~p~~~P~ 51 (124)
T PF15594_consen 6 PEKIISIFGEWPSFHDA--EIFSVLLDRD------GPRLSIHF-DTKEFPDNPPK 51 (124)
T ss_pred HHHHHHHhCCCCCccee--EEEEEEEEcC------CCEEEEEE-EECCCCCCCCc
Confidence 36899999876433321 2556666432 23677777 67778887765
No 44
>PRK01271 4-oxalocrotonate tautomerase; Provisional
Probab=52.74 E-value=33 Score=24.57 Aligned_cols=35 Identities=20% Similarity=0.285 Sum_probs=30.4
Q ss_pred CCeEEEecCCC-CCHHHHHHHHHHHHHHHHhcCCch
Q psy8772 63 IPIIEIENCDN-IDEDVERELKEYLLTQANENLGMV 97 (234)
Q Consensus 63 ~P~i~l~~~~~-L~~~~~~~L~~~L~~~~ee~lG~~ 97 (234)
.|.|.|.-..| .+.++...|-+.+...+.+.+|.+
T Consensus 1 MP~I~I~~~~g~~s~EqK~~La~~iT~a~~~~lg~~ 36 (76)
T PRK01271 1 MPHIDIKCFPRELDEEQKAALAADITDVIIRHLNSK 36 (76)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 48889988886 899999999999999998888765
No 45
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=48.94 E-value=17 Score=28.67 Aligned_cols=24 Identities=13% Similarity=0.194 Sum_probs=19.0
Q ss_pred CcceEEEEEEeCCCCCCCCCe-EEE
Q psy8772 45 HQMNCLLRFQYTPKYPEEIPI-IEI 68 (234)
Q Consensus 45 ~~~~l~L~~~~p~~YP~~~P~-i~l 68 (234)
+...+.+-|.+|++||.++|. +++
T Consensus 40 ~~~~~dili~iP~gYP~~~~DmfY~ 64 (122)
T PF14462_consen 40 NHNEVDILILIPPGYPDAPLDMFYV 64 (122)
T ss_pred CccceEEEEECCCCCCCCCCCcEEE
Confidence 356789999999999998764 444
No 46
>PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. The proteins in this entry represent subunit Med15 of the Mediator complex. They contain a single copy of the approximately 70 residue ARC105 domain. The ARC105 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, ARC105 is a critical transducer of gene activation signals that control early metazoan development []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2GUT_A.
Probab=47.51 E-value=6.2 Score=40.37 Aligned_cols=58 Identities=12% Similarity=0.296 Sum_probs=0.0
Q ss_pred EEEEeCCCCCCCCCeEEEecCC-CCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Q psy8772 51 LRFQYTPKYPEEIPIIEIENCD-NIDEDVERELKEYLLTQANENLGMVMIFTLVSSAQEWLST 112 (234)
Q Consensus 51 L~~~~p~~YP~~~P~i~l~~~~-~L~~~~~~~L~~~L~~~~ee~lG~~mIf~lv~~lqE~l~~ 112 (234)
|.++.|.+||..+|.+.+.... +++. .+..|...|.+.. +-+|=.|+|...|--|-..
T Consensus 718 l~l~vP~~YP~~sp~~~~~~~~y~~~~-Fl~~v~~~~~~Rl---~~lP~~~svt~lL~tWe~s 776 (799)
T PF09606_consen 718 LRLTVPADYPRQSPQCSVDRDEYDATP-FLQDVQNALTSRL---AKLPDKHSVTQLLNTWEMS 776 (799)
T ss_dssp ---------------------------------------------------------------
T ss_pred eeEeCCCCCCccCCcCcccHHHhccCh-HHHHHHHHHHHHH---HhCCCceeHHHHHHHHHHH
Confidence 4566899999999998774332 1222 3333444444332 3345566665555555433
No 47
>KOG3357|consensus
Probab=40.33 E-value=21 Score=28.50 Aligned_cols=28 Identities=21% Similarity=0.412 Sum_probs=23.3
Q ss_pred cceEEEEEEeCCCCCCCCCeEEEecCCC
Q psy8772 46 QMNCLLRFQYTPKYPEEIPIIEIENCDN 73 (234)
Q Consensus 46 ~~~l~L~~~~p~~YP~~~P~i~l~~~~~ 73 (234)
...+.+.|..|-+||.++|.|.+-...|
T Consensus 77 kyefdvefdipityp~tapeialpeldg 104 (167)
T KOG3357|consen 77 KYEFDVEFDIPITYPTTAPEIALPELDG 104 (167)
T ss_pred hheeeeeeccccccCCCCccccccccCc
Confidence 4568899999999999999998866544
No 48
>KOG0897|consensus
Probab=38.36 E-value=31 Score=26.92 Aligned_cols=25 Identities=20% Similarity=0.199 Sum_probs=21.5
Q ss_pred ceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772 47 MNCLLRFQYTPKYPEEIPIIEIENC 71 (234)
Q Consensus 47 ~~l~L~~~~p~~YP~~~P~i~l~~~ 71 (234)
-.+.|.++++.+||..||...+..+
T Consensus 11 e~ill~~~f~~~fp~~ppf~rvv~p 35 (122)
T KOG0897|consen 11 ENILLLDIFDDNFPFMPPFPRVVKP 35 (122)
T ss_pred ceeEeeeecccCCCCCCCcceeeee
Confidence 4688999999999999999887664
No 49
>COG1942 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog [General function prediction only]
Probab=38.19 E-value=78 Score=22.26 Aligned_cols=35 Identities=26% Similarity=0.427 Sum_probs=29.0
Q ss_pred CCeEEEecCCC-CCHHHHHHHHHHHHHHHHhcCCch
Q psy8772 63 IPIIEIENCDN-IDEDVERELKEYLLTQANENLGMV 97 (234)
Q Consensus 63 ~P~i~l~~~~~-L~~~~~~~L~~~L~~~~ee~lG~~ 97 (234)
.|.+.+...+| ++.+++..|-..+.+..-+.+|.+
T Consensus 1 MP~v~Ik~~~g~~~~~~K~~la~~vT~~~~~~lg~~ 36 (69)
T COG1942 1 MPFVNIKLFEGRLDEEQKAELAAEVTEVTVETLGKD 36 (69)
T ss_pred CCEEEEEecCCCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 48888888766 788889999999999988887764
No 50
>PF14552 Tautomerase_2: Tautomerase enzyme; PDB: 2AAG_C 2AAL_A 2AAJ_A 1MWW_C.
Probab=32.96 E-value=1.1e+02 Score=22.16 Aligned_cols=44 Identities=27% Similarity=0.411 Sum_probs=27.4
Q ss_pred EEeCCCCCCCC--C---eEEEecCCCCCHHHHHHHHHHHHHHHHhcCCc
Q psy8772 53 FQYTPKYPEEI--P---IIEIENCDNIDEDVERELKEYLLTQANENLGM 96 (234)
Q Consensus 53 ~~~p~~YP~~~--P---~i~l~~~~~L~~~~~~~L~~~L~~~~ee~lG~ 96 (234)
|.||++|.... + .|+|....|=+.+++..|.+.|.+...+++|.
T Consensus 14 ~~~~~~ylg~~Rs~~~v~I~It~~~gRs~e~K~~ly~~l~~~L~~~~gi 62 (82)
T PF14552_consen 14 FIYDPTYLGIDRSDDFVIIQITSGAGRSTEQKKALYRALAERLAEKLGI 62 (82)
T ss_dssp EEE-TTTS--TS-TT-EEEEEEECS---HHHHHHHHHHHHHHHHHHH--
T ss_pred EEECCccCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 56888887642 2 36666666778899999999998888777664
No 51
>PF07141 Phage_term_sma: Putative bacteriophage terminase small subunit; InterPro: IPR010789 This entry is represented by Bacteriophage 712, Gp1; it is a family of uncharacterised viral proteins. This family consists of several putative Lactococcus bacteriophage terminase small subunit proteins. The exact function of this family is unknown.
Probab=31.80 E-value=50 Score=26.54 Aligned_cols=50 Identities=16% Similarity=0.191 Sum_probs=27.4
Q ss_pred cCCcccCHhhHHHhHHhHHHHHHHHHHHH-HhH---HHhhhcCCCCchhhhccC
Q psy8772 140 FEGTVVTLETFIAWKAKFDKDMAHIIFEE-KNK---AKEKTAGKLTGREMFMQD 189 (234)
Q Consensus 140 ~~gT~VT~E~F~~Wk~~f~~e~~~~~~~~-~~~---~~~~~~~~ltGrqlFe~~ 189 (234)
|+.-.++.-+|-+||...++-......-. .+. ....-+.||+|+.|=+..
T Consensus 38 c~~L~isrKtFyeWrdtk~eA~eeA~~~rdd~LlmLArssLk~KLegyTLtET~ 91 (174)
T PF07141_consen 38 CTSLHISRKTFYEWRDTKIEAYEEAKGIRDDNLLMLARSSLKSKLEGYTLTETE 91 (174)
T ss_pred HHHHhccHHHHHHHHhhhHHHHHHHHhhccchHHHHHHHHHHhhcceeeeccce
Confidence 33345666799999998754332222000 000 001136889999987764
No 52
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=30.42 E-value=1.2e+02 Score=27.37 Aligned_cols=40 Identities=18% Similarity=0.287 Sum_probs=26.2
Q ss_pred cCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772 26 EKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC 71 (234)
Q Consensus 26 ~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~ 71 (234)
+++-..+++++.- .. ..-.|.+.+|.+||..+|.+.+-.+
T Consensus 122 d~~ls~i~l~~~D-----~~-R~H~l~l~l~~~yp~~~p~~~~~~P 161 (291)
T PF09765_consen 122 DDDLSTIKLKIFD-----SS-RQHYLELKLPSNYPFEPPSCSLDLP 161 (291)
T ss_dssp -CCCSEEEEEEET-----TC-EEEEEEEETTTTTTTSEEEECS-TT
T ss_pred CCCccEEEEEEEc-----CC-ceEEEEEEECCCCCCCCceeeCCCC
Confidence 3333455555531 22 5678899999999999998776443
No 53
>KOG0895|consensus
Probab=27.27 E-value=1.4e+02 Score=31.83 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=20.1
Q ss_pred eEEEEEEeCCCCCCCCCeEEEecC
Q psy8772 48 NCLLRFQYTPKYPEEIPIIEIENC 71 (234)
Q Consensus 48 ~l~L~~~~p~~YP~~~P~i~l~~~ 71 (234)
-+...|.+|..||.++|.+...+.
T Consensus 330 lf~Fdiq~P~~yPa~pp~v~~lt~ 353 (1101)
T KOG0895|consen 330 LFLFDIQFPDTYPAVPPHVKYLTG 353 (1101)
T ss_pred ceeeEeecCCCCCCCCceeEEeec
Confidence 344899999999999999887664
No 54
>PF04036 DUF372: Domain of unknown function (DUF372); InterPro: IPR007179 This is a group of proteins of unknown function. It is found N-terminal to another domain of unknown function (IPR007181 from INTERPRO).; PDB: 2I52_B 2IEC_D 2OGF_C.
Probab=25.38 E-value=23 Score=22.11 Aligned_cols=15 Identities=40% Similarity=0.430 Sum_probs=10.4
Q ss_pred hccCCcccCHhhHHH
Q psy8772 138 KRFEGTVVTLETFIA 152 (234)
Q Consensus 138 ~~~~gT~VT~E~F~~ 152 (234)
..|.||||++++-..
T Consensus 16 HQF~GtPvs~~~~~~ 30 (38)
T PF04036_consen 16 HQFVGTPVSPETAES 30 (38)
T ss_dssp HHHTT-EESTTTHHH
T ss_pred HHhcCCcCCcchHHH
Confidence 356899999987543
No 55
>KOG4274|consensus
Probab=24.62 E-value=3.9e+02 Score=26.73 Aligned_cols=54 Identities=9% Similarity=0.224 Sum_probs=32.7
Q ss_pred EEEEeCCCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q psy8772 51 LRFQYTPKYPEEIPIIEIENCDNIDEDVERELKEYLLTQANENLGMVMIFTLVSSAQEW 109 (234)
Q Consensus 51 L~~~~p~~YP~~~P~i~l~~~~~L~~~~~~~L~~~L~~~~ee~lG~~mIf~lv~~lqE~ 109 (234)
|.++.|.+||... ....+....+....+..+...+.+.... |=.|+|...|--|
T Consensus 663 l~lsVP~~YPaq~-~~vdr~~~y~a~pflq~vq~s~~~Rlsr----P~~~Sit~lLntW 716 (742)
T KOG4274|consen 663 LRLSVPTTYPAQN-VTVDRAVIYLAAPFLQDVQNSVYERLSR----PGLSSITDLLNTW 716 (742)
T ss_pred eeeeccccccccc-hhhhhHHHhhhcHHHHHHHHHHHHHHcc----CCcchHHHHHHHH
Confidence 7888999999877 3333344445666667777766655433 4455544444434
No 56
>COG3657 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.94 E-value=2e+02 Score=21.81 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=18.2
Q ss_pred cccCHhhHHHhHHhHHHHHHHHH
Q psy8772 143 TVVTLETFIAWKAKFDKDMAHII 165 (234)
Q Consensus 143 T~VT~E~F~~Wk~~f~~e~~~~~ 165 (234)
|+-+.++|.+|.++.+-.++..+
T Consensus 5 ~~~~~d~F~~W~~kLkD~~Aka~ 27 (100)
T COG3657 5 TLKGTDTFSEWLKKLKDRRAKAK 27 (100)
T ss_pred eecchHHHHHHHHHHHhHHHHHH
Confidence 45567899999999887776655
Done!