Query psy8772
Match_columns 234
No_of_seqs 197 out of 1016
Neff 6.9
Searched_HMMs 29240
Date Fri Aug 16 18:53:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8772.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8772hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ebm_A RWD domain-containing p 100.0 1.5E-29 5E-34 198.7 15.8 118 2-119 10-127 (128)
2 2yz0_A Serine/threonine-protei 100.0 1E-27 3.6E-32 190.6 13.5 110 3-113 11-128 (138)
3 1ukx_A GCN2, GCN2 EIF2alpha ki 99.9 1.6E-27 5.6E-32 189.0 12.4 114 1-114 9-130 (137)
4 2day_A Ring finger protein 25; 99.9 1.2E-26 4.1E-31 182.1 13.0 110 4-113 10-125 (128)
5 2ebk_A RWD domain-containing p 99.9 2.2E-26 7.6E-31 180.8 10.8 112 3-116 8-124 (128)
6 2dax_A Protein C21ORF6; RWD do 99.9 1.8E-23 6.2E-28 168.9 10.7 114 2-117 8-143 (152)
7 2daw_A RWD domain containing p 99.9 8.9E-23 3E-27 165.5 12.2 109 3-116 15-144 (154)
8 4a9a_C Translation machinery-a 99.1 7.1E-11 2.4E-15 93.2 3.6 55 129-189 19-76 (142)
9 2a7l_A Hypothetical ubiquitin- 96.3 0.019 6.6E-07 44.7 8.6 67 5-71 25-95 (136)
10 2aak_A UBC1, ubiquitin conjuga 95.7 0.097 3.3E-06 41.2 10.1 67 5-71 7-75 (152)
11 1ayz_A UBC2, ubiquitin-conjuga 95.6 0.087 3E-06 42.4 9.9 67 5-71 7-75 (169)
12 1zdn_A Ubiquitin-conjugating e 95.6 0.12 4E-06 41.0 10.4 68 5-72 16-85 (158)
13 1wzv_A Ubiquitin-conjugating e 95.6 0.076 2.6E-06 41.9 9.2 67 4-71 6-75 (155)
14 2bep_A Ubiquitin-conjugating e 95.5 0.12 4E-06 41.0 10.0 67 5-71 11-82 (159)
15 2e2c_A Ubiquitin conjugating e 95.4 0.17 5.7E-06 40.0 10.6 68 5-72 12-81 (156)
16 2ayv_A Ubiquitin-conjugating e 95.3 0.1 3.4E-06 41.9 9.2 66 6-71 25-92 (166)
17 2fo3_A Ubiquitin-conjugating e 95.3 0.11 3.6E-06 39.7 8.8 66 6-71 10-77 (125)
18 2ucz_A UBC7, ubiquitin conjuga 95.2 0.16 5.3E-06 40.5 10.0 67 5-71 7-76 (165)
19 2h2y_A Ubiquitin-conjugating e 95.2 0.18 6.1E-06 39.0 10.1 67 5-71 23-91 (136)
20 2c2v_B Ubiquitin-conjugating e 95.2 0.15 5E-06 40.3 9.6 66 6-71 9-76 (154)
21 3h8k_A Ubiquitin-conjugating e 95.0 0.17 5.8E-06 40.2 9.7 66 6-71 7-75 (164)
22 1z2u_A Ubiquitin-conjugating e 95.0 0.11 3.6E-06 40.9 8.4 66 6-71 8-75 (150)
23 2c4o_A Ubiquitin-conjugating e 95.0 0.13 4.3E-06 41.2 8.9 66 6-71 23-90 (165)
24 2r0j_A Ubiquitin carrier prote 95.0 0.12 4.1E-06 40.5 8.5 64 8-71 7-72 (149)
25 1fxt_A Ubiquitin-conjugating e 94.9 0.17 5.9E-06 39.6 9.3 66 6-71 5-73 (149)
26 1jat_A Ubiquitin-conjugating e 94.9 0.13 4.3E-06 40.7 8.5 66 6-71 9-76 (155)
27 4gpr_A Ubiquitin-conjugating e 94.9 0.16 5.6E-06 39.9 9.1 66 6-71 8-75 (151)
28 2awf_A Ubiquitin-conjugating e 94.9 0.16 5.4E-06 40.9 9.2 65 7-71 22-89 (172)
29 3rz3_A Ubiquitin-conjugating e 94.8 0.25 8.7E-06 40.1 10.3 67 5-71 10-79 (183)
30 1yh2_A HSPC150 protein similar 94.8 0.16 5.4E-06 40.8 8.9 66 6-71 8-75 (169)
31 1yrv_A Ubiquitin-conjugating l 94.7 0.18 6.1E-06 40.6 9.0 66 6-71 27-94 (169)
32 2pwq_A Ubiquitin conjugating e 94.6 0.18 6E-06 42.3 9.1 104 6-112 27-135 (216)
33 2grr_A Ubiquitin-conjugating e 94.6 0.19 6.6E-06 39.9 9.0 67 5-71 10-83 (161)
34 3bzh_A Ubiquitin-conjugating e 94.5 0.22 7.6E-06 40.9 9.4 66 6-71 52-119 (194)
35 2y9m_A Ubiquitin-conjugating e 94.4 0.28 9.6E-06 39.4 9.5 66 5-70 9-88 (172)
36 1i7k_A Ubiquitin-conjugating e 94.3 0.33 1.1E-05 39.4 9.8 68 5-72 33-102 (179)
37 2gjd_A Ubiquitin-conjugating e 94.2 0.22 7.4E-06 39.4 8.4 67 5-71 7-80 (157)
38 3k9o_A Ubiquitin-conjugating e 94.2 0.27 9.4E-06 40.4 9.2 67 5-71 8-79 (201)
39 3fn1_B NEDD8-conjugating enzym 94.0 0.24 8.4E-06 39.4 8.4 65 6-71 18-85 (167)
40 2onu_A Ubiquitin-conjugating e 93.9 0.25 8.6E-06 38.9 8.2 44 28-71 27-70 (152)
41 2f4w_A Ubiquitin-conjugating e 93.9 0.25 8.7E-06 40.3 8.5 66 6-71 18-85 (187)
42 4ds2_A Ubiquitin-conjugating e 93.9 0.25 8.5E-06 39.5 8.2 45 27-71 47-93 (167)
43 1jat_B Ubiquitin-conjugating e 93.6 0.65 2.2E-05 35.8 10.0 66 6-71 10-81 (138)
44 3o2u_A NEDD8-conjugating enzym 93.6 0.22 7.4E-06 40.8 7.5 62 7-71 34-104 (190)
45 1c4z_D UBCH7, ubiquitin conjug 93.6 0.091 3.1E-06 41.4 5.1 63 8-71 8-73 (154)
46 3rcz_B SUMO-conjugating enzyme 93.5 0.39 1.3E-05 38.3 8.7 67 5-71 13-86 (163)
47 2q0v_A Ubiquitin-conjugating e 93.4 0.74 2.5E-05 36.4 10.2 66 6-71 25-96 (156)
48 2a4d_A Ubiquitin-conjugating e 93.1 0.5 1.7E-05 37.6 8.8 66 6-71 29-100 (160)
49 2f4z_A Tgtwinscan_2721 - E2 do 93.0 0.37 1.3E-05 39.6 8.0 66 6-71 36-116 (193)
50 3e46_A Ubiquitin-conjugating e 92.9 0.57 2E-05 40.1 9.3 67 5-71 60-131 (253)
51 1yf9_A Ubiquitin carrier prote 92.5 0.53 1.8E-05 37.8 8.1 64 6-71 16-79 (171)
52 2z5d_A Ubiquitin-conjugating e 92.4 0.24 8.3E-06 40.2 6.0 63 6-71 29-92 (179)
53 1tte_A Ubiquitin-conjugating e 91.9 0.26 9E-06 41.2 5.9 66 6-71 6-74 (215)
54 3ceg_A Baculoviral IAP repeat- 91.9 1.1 3.9E-05 39.6 10.3 66 6-71 80-151 (323)
55 1y8x_A Ubiquitin-conjugating e 91.6 0.4 1.4E-05 38.0 6.4 62 7-71 11-75 (160)
56 4ddg_A Ubiquitin-conjugating e 91.6 0.76 2.6E-05 41.7 9.0 66 6-71 7-74 (399)
57 2nvu_C NEDD8-conjugating enzym 90.7 0.46 1.6E-05 38.5 6.1 62 7-71 31-95 (180)
58 1zuo_A Hypothetical protein LO 90.5 0.2 6.9E-06 40.9 3.7 66 6-71 31-113 (186)
59 2hlw_A Ubiquitin-conjugating e 90.1 0.47 1.6E-05 38.1 5.5 66 6-71 39-110 (170)
60 3kpa_A Probable ubiquitin fold 89.9 0.17 5.7E-06 40.3 2.6 26 46-71 84-109 (168)
61 2z6o_A UFM1-conjugating enzyme 88.9 0.22 7.7E-06 40.2 2.7 24 47-70 83-106 (172)
62 3obq_A Tumor susceptibility ge 77.1 2 6.8E-05 33.7 3.6 63 4-70 22-92 (146)
63 3r3q_A Suppressor protein STP2 76.5 2.1 7.1E-05 34.2 3.6 24 47-70 81-104 (162)
64 3zqs_A E3 ubiquitin-protein li 75.2 15 0.0005 29.9 8.4 46 22-72 18-63 (186)
65 2x4k_A 4-oxalocrotonate tautom 73.3 5.2 0.00018 25.2 4.4 36 62-97 2-37 (63)
66 2opa_A Probable tautomerase YW 72.6 4.5 0.00016 25.6 3.9 34 64-97 1-34 (61)
67 3m20_A 4-oxalocrotonate tautom 72.5 5 0.00017 26.0 4.2 33 64-97 1-33 (62)
68 1otf_A 4-oxalocrotonate tautom 71.6 4.9 0.00017 25.5 3.9 34 64-97 1-34 (62)
69 3abf_A 4-oxalocrotonate tautom 71.3 5.4 0.00019 25.5 4.1 35 63-97 1-35 (64)
70 3ry0_A Putative tautomerase; o 69.7 5.6 0.00019 25.9 3.9 34 64-97 1-34 (65)
71 3mb2_A 4-oxalocrotonate tautom 67.0 5.6 0.00019 26.5 3.6 35 63-97 1-35 (72)
72 3m21_A Probable tautomerase HP 66.4 7.2 0.00025 25.5 4.0 34 64-97 1-37 (67)
73 3ej9_A Alpha-subunit of trans- 62.6 8.9 0.0003 26.0 3.9 35 63-97 1-35 (76)
74 3qc5_X Platelet binding protei 58.8 19 0.00064 32.0 6.2 40 47-88 270-309 (360)
75 3mlc_A FG41 malonate semialdeh 52.4 27 0.00092 26.4 5.6 44 53-97 50-98 (136)
76 3ej9_B Beta-subunit of trans-3 47.2 25 0.00084 24.0 3.9 34 64-97 1-34 (70)
77 1gyx_A YDCE, B1461, hypothetic 46.8 27 0.00092 23.3 4.3 34 64-97 1-35 (76)
78 2aal_A Malonate semialdehyde d 34.4 41 0.0014 24.8 3.9 35 63-97 1-35 (131)
79 3mlc_A FG41 malonate semialdeh 30.9 37 0.0013 25.6 3.2 34 64-97 1-34 (136)
80 3fcs_B Integrin beta-3; beta p 26.9 48 0.0016 32.1 3.9 51 29-86 85-135 (690)
81 1mww_A Hypothetical protein HI 26.5 1E+02 0.0034 22.4 4.9 35 63-97 59-93 (128)
82 1hfo_A Migration inhibitory fa 25.8 82 0.0028 22.2 4.2 38 60-97 53-90 (113)
83 2aal_A Malonate semialdehyde d 25.8 1.1E+02 0.0039 22.2 5.1 33 64-97 67-99 (131)
84 3c6v_A Probable tautomerase/de 25.6 1E+02 0.0034 24.0 5.0 34 63-97 22-56 (161)
85 2wkb_A Macrophage migration in 23.6 96 0.0033 22.5 4.3 37 64-100 1-37 (125)
86 1p3q_Q VPS9P, vacuolar protein 23.5 58 0.002 21.0 2.6 18 4-21 9-26 (54)
87 1uiz_A MIF, macrophage migrati 23.5 99 0.0034 21.9 4.3 37 61-97 55-91 (115)
88 3t5s_A Gilaa.00834.A, macropha 21.5 1.2E+02 0.0042 22.6 4.6 38 61-98 20-57 (135)
89 2wkb_A Macrophage migration in 21.4 52 0.0018 24.0 2.4 38 60-97 54-91 (125)
90 3t3p_B Integrin beta-3; integr 21.2 1.2E+02 0.0041 28.0 5.2 57 29-92 85-141 (472)
91 3k6s_B Integrin beta-2; cell r 21.0 46 0.0016 32.2 2.5 56 28-90 77-132 (687)
92 3b64_A Macrophage migration in 20.5 1.6E+02 0.0054 20.7 4.9 35 64-99 1-36 (112)
No 1
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.97 E-value=1.5e-29 Score=198.73 Aligned_cols=118 Identities=44% Similarity=0.722 Sum_probs=109.0
Q ss_pred ChHHHHHHHHHHHHhhcCCCeeeccCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecCCCCCHHHHHH
Q psy8772 2 DYQEEQSNEIEALDSIYYGDMEILEKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENCDNIDEDVERE 81 (234)
Q Consensus 2 ~~~EeQ~~ElEaLeSIY~de~~~~~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~~~L~~~~~~~ 81 (234)
++.++|.+|++||+||||++|++++..|.+|+|+|.+..+++...+++.|+|+||++||+++|.|.+.+..||+..++..
T Consensus 10 ~~~e~q~~EleaL~sIy~d~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~~~~l~~~~~~~ 89 (128)
T 2ebm_A 10 DYGEEQRNELEALESIYPDSFTVLSENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFSQENLEDNDVSD 89 (128)
T ss_dssp CHHHHHHHHHHHHHHHCSSSEEECCSSSCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEEEESSCCHHHHHH
T ss_pred ChHHHHHHHHHHHHHHccCceEEccCCCCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEEcCCCCCHHHHHH
Confidence 48999999999999999999999987789999999987654445689999999999999999999998888999999999
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhHHHhHH
Q psy8772 82 LKEYLLTQANENLGMVMIFTLVSSAQEWLSTKSDQLKK 119 (234)
Q Consensus 82 L~~~L~~~~ee~lG~~mIf~lv~~lqE~l~~~~~~~~~ 119 (234)
|.+.|.+++++++|++|||+||+|+|++|.+++++.++
T Consensus 90 L~~~L~~~~~e~~G~~mif~lv~~lqe~l~e~~~~~~~ 127 (128)
T 2ebm_A 90 ILKLLALQAEENLGMVMIFTLVTAVQEKLNEIVDQIKT 127 (128)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHhCCCEEHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999987765
No 2
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=99.95 E-value=1e-27 Score=190.57 Aligned_cols=110 Identities=34% Similarity=0.435 Sum_probs=101.1
Q ss_pred hHHHHHHHHHHHHhhcCCCeeeccC--------CCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecCCCC
Q psy8772 3 YQEEQSNEIEALDSIYYGDMEILEK--------DPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENCDNI 74 (234)
Q Consensus 3 ~~EeQ~~ElEaLeSIY~de~~~~~~--------~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~~~L 74 (234)
|.++|.+|++||+||||++|++++. .+.+|+|+|.+..+ ....+++.|+|+||++||+++|.|.+.+..||
T Consensus 11 ~~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~f~I~l~~~~~-~~~~~~~~L~~~~p~~YP~~~P~i~l~~~~~L 89 (138)
T 2yz0_A 11 YYEIQCNELEAIRSIYMDDFTDLTKRKSSWDKQPQIIFEITLRSVDK-EPVESSITLHFAMTPMYPYTAPEIEFKNVQNV 89 (138)
T ss_dssp HHHHHHHHHHHHHTTSSSSEECCSTTSSSSCSSCCSCEEEEEECSSC-SSCCCEEEEEEECCSSTTSSCCEEEEECCCSC
T ss_pred hHHHHHHHHHHHHHHChhhheecccccccccCCCCcEEEEEEecCCC-CCCceEEEEEEECCCCCCCCCCeEEEecCCCC
Confidence 7899999999999999999998875 25899999987653 23468999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Q psy8772 75 DEDVERELKEYLLTQANENLGMVMIFTLVSSAQEWLSTK 113 (234)
Q Consensus 75 ~~~~~~~L~~~L~~~~ee~lG~~mIf~lv~~lqE~l~~~ 113 (234)
+..++..|++.|..++++++|++|||+||+|+|++|.++
T Consensus 90 ~~~~~~~L~~~L~~~~~e~~G~~mif~lv~~lqe~l~~~ 128 (138)
T 2yz0_A 90 MDSQLQMLKSEFKKIHNTSRGQEIIFEITSFTQEKLDEF 128 (138)
T ss_dssp CSHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCCEEHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887
No 3
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=99.95 E-value=1.6e-27 Score=188.97 Aligned_cols=114 Identities=29% Similarity=0.506 Sum_probs=101.6
Q ss_pred CChHHHHHHHHHHHHhhcCCCeeeccCC-------CcEEEEEeccCCCC-CCCcceEEEEEEeCCCCCCCCCeEEEecCC
Q psy8772 1 MDYQEEQSNEIEALDSIYYGDMEILEKD-------PHVFTIPIQSECVD-DEHQMNCLLRFQYTPKYPEEIPIIEIENCD 72 (234)
Q Consensus 1 M~~~EeQ~~ElEaLeSIY~de~~~~~~~-------p~~f~I~i~~~~~~-~~~~~~l~L~~~~p~~YP~~~P~i~l~~~~ 72 (234)
|+|.++|.+|++||+|||+|+|++++.. |.+|+|+|.+...+ ....+++.|+|+||++||+++|.|.+.+..
T Consensus 9 ~~~~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~~~ 88 (137)
T 1ukx_A 9 ESYSQRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLYPQGLAGEEVYVQVELRVKCPPTYPDVVPEIDLKNAK 88 (137)
T ss_dssp CCHHHHHHHHHHHHHHHTSSSEEECCCCCSSSCCCCCCEEEEECCTTSCSSSCSCEEEEEECCCTTTTSSCCCCEEEEEE
T ss_pred cchHHHHHHHHHHHHHHCcccceeccCcccCccCCCcEEEEEEecCCcCCcccceEEEEEEECCCCCCCCCCcEEEecCC
Confidence 4589999999999999999999988742 68999999875422 123589999999999999999999998889
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhH
Q psy8772 73 NIDEDVERELKEYLLTQANENLGMVMIFTLVSSAQEWLSTKS 114 (234)
Q Consensus 73 ~L~~~~~~~L~~~L~~~~ee~lG~~mIf~lv~~lqE~l~~~~ 114 (234)
||+..++..|++.|.+++++++|++|||+||+|||++|.++.
T Consensus 89 ~L~~~~~~~L~~~L~~~~~e~~G~~mif~lv~~lqe~l~~~~ 130 (137)
T 1ukx_A 89 GLSNESVNLLKSHLEELAKKQCGEVMIFELAHHVQSFLSEHN 130 (137)
T ss_dssp SSSSSHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCEEhHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999998764
No 4
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=99.94 E-value=1.2e-26 Score=182.09 Aligned_cols=110 Identities=25% Similarity=0.445 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHhhcCCCeeeccC----CCcEEEEEeccCCCC--CCCcceEEEEEEeCCCCCCCCCeEEEecCCCCCHH
Q psy8772 4 QEEQSNEIEALDSIYYGDMEILEK----DPHVFTIPIQSECVD--DEHQMNCLLRFQYTPKYPEEIPIIEIENCDNIDED 77 (234)
Q Consensus 4 ~EeQ~~ElEaLeSIY~de~~~~~~----~p~~f~I~i~~~~~~--~~~~~~l~L~~~~p~~YP~~~P~i~l~~~~~L~~~ 77 (234)
.+.|.+|++||+|||+++|++++. .|..|+|+|.+..++ ....+++.|+|+||++||+++|.|.+.+.+||+..
T Consensus 10 ~e~~~~EleaL~SIY~de~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~~~~~~L~~~ 89 (128)
T 2day_A 10 DWVLPSEVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRNPRGLSDE 89 (128)
T ss_dssp CCHHHHHHHHHHHHSTTTEEEECCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEEEESSCHH
T ss_pred HHHHHHHHHHHHHHCCCceEEecCCCCCCCeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEEEcCCCCCHH
Confidence 478999999999999999998874 578999999876542 12468999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Q psy8772 78 VERELKEYLLTQANENLGMVMIFTLVSSAQEWLSTK 113 (234)
Q Consensus 78 ~~~~L~~~L~~~~ee~lG~~mIf~lv~~lqE~l~~~ 113 (234)
++..|++.|.+++++++|++|||+||+++|++|.+.
T Consensus 90 ~~~~L~~~L~~~~~e~~G~~mif~lv~~lqe~l~~~ 125 (128)
T 2day_A 90 QIHTILQVLGHVAKAGLGTAMLYELIEKGKEILSGP 125 (128)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHhCCCEEhHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999754
No 5
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.93 E-value=2.2e-26 Score=180.79 Aligned_cols=112 Identities=27% Similarity=0.346 Sum_probs=99.6
Q ss_pred hHHHHHHHHHHHHhhcCC--CeeeccCC---CcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecCCCCCHH
Q psy8772 3 YQEEQSNEIEALDSIYYG--DMEILEKD---PHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENCDNIDED 77 (234)
Q Consensus 3 ~~EeQ~~ElEaLeSIY~d--e~~~~~~~---p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~~~L~~~ 77 (234)
+.+.|.+|++||+|||++ +|++++.. +.+|+|+|.+.... +..+++.|+|+||++||+++|.|.+. ..||++.
T Consensus 8 ~~e~q~~EleaL~SIy~d~~e~~~~~~~~~~~~~f~i~l~~~~~~-~~~~~~~L~~~~p~~YP~~~P~i~l~-~~~L~~~ 85 (128)
T 2ebk_A 8 MAEPVQEELSVLAAIFCRPHEWEVLSRSETDGTVFRIHTKAEGFM-DADIPLELVFHLPVNYPSCLPGISIN-SEQLTRA 85 (128)
T ss_dssp SCHHHHHHHHHHHHHHCCTTTCCCSEECSSSCEEEEEEEECCTTT-TCCCEEEEEEEECSSTTSSCCCCCCC-CSSSCHH
T ss_pred HHHHHHHHHHHHHHHcCCCCceEEecCCCCCCCeEEEEecCCCCC-CCCeEEEEEEECCCCCCCCCCeEEEE-hhhCCHH
Confidence 678999999999999998 89988743 47999999876532 23578999999999999999999997 6899999
Q ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhHHH
Q psy8772 78 VERELKEYLLTQANENLGMVMIFTLVSSAQEWLSTKSDQ 116 (234)
Q Consensus 78 ~~~~L~~~L~~~~ee~lG~~mIf~lv~~lqE~l~~~~~~ 116 (234)
++..|++.|.+++++++|++|||+||+|+|+++.+++++
T Consensus 86 ~~~~l~~~L~~~~~e~~G~~mif~lv~~lqe~l~~~~~~ 124 (128)
T 2ebk_A 86 QCVTVKEKLLEQAESLLSEPMVHELVLWIQQNLRHILSQ 124 (128)
T ss_dssp HHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTSHHHHHCC
T ss_pred HHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999988754
No 6
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=99.89 E-value=1.8e-23 Score=168.92 Aligned_cols=114 Identities=20% Similarity=0.244 Sum_probs=96.1
Q ss_pred ChHHHHHHHHHHHHhhcC--CCeeeccC----------------CC---cEEEEEeccCCCCCCCcceEEEEEEeCCCCC
Q psy8772 2 DYQEEQSNEIEALDSIYY--GDMEILEK----------------DP---HVFTIPIQSECVDDEHQMNCLLRFQYTPKYP 60 (234)
Q Consensus 2 ~~~EeQ~~ElEaLeSIY~--de~~~~~~----------------~p---~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP 60 (234)
+|.+.|.+||+||+|||| |+|++++. .| ..|+|+|.+.... ...+++.|+|+||++||
T Consensus 8 ~~~e~Q~~EleaL~SIY~~~de~~~~~~~~~~~l~~~~~~~~~~~p~~~~~f~I~l~~~~~~-~~~~~l~L~v~lP~~YP 86 (152)
T 2dax_A 8 EQAEAQLAELDLLASMFPGENELIVNDQLAVAELKDCIEKKTMEGRSSKVYFTINMNLDVSD-EKMAMFSLACILPFKYP 86 (152)
T ss_dssp HHHHHHHHHHHHHHHHCCSSSSEEESCHHHHHHHHHHHHHTCCCCCCSCEEEEEEEEEECST-TCEEEEEEEEEECSSTT
T ss_pred chHHHHHHHHHHHHHhCCCCCeEEEcCchhHHHHHHHhhcccccCCCCceEEEEEEecCCCC-ccCceEEEEEECCCCCC
Confidence 388999999999999999 88988763 12 4899998764432 34578999999999999
Q ss_pred CCCCeEEEecCCCCCHHHHHHHHHHHHHHHH-hcCCchHHHHHHHHHHHHHHHhHHHh
Q psy8772 61 EEIPIIEIENCDNIDEDVERELKEYLLTQAN-ENLGMVMIFTLVSSAQEWLSTKSDQL 117 (234)
Q Consensus 61 ~~~P~i~l~~~~~L~~~~~~~L~~~L~~~~e-e~lG~~mIf~lv~~lqE~l~~~~~~~ 117 (234)
+++|.|.+.+. +++..+...|...|.+.++ +++|++|||+|++|||+++.+++.+.
T Consensus 87 ~~~P~i~l~~~-~l~~~~~~~L~~~L~~~~~~~~~G~~mif~lv~~lqe~l~~~~~~~ 143 (152)
T 2dax_A 87 AVLPEITVRSV-LLSRSQQTQLNTDLTAFLQKHCHGDVCILNATEWVREHASGYVSRD 143 (152)
T ss_dssp SSCCCCEEECT-TSCHHHHHHHHHHHHHHHHHSSCSSCCSHHHHHHHHHHHHHHCCCC
T ss_pred CCCCeEEEEcc-cCCHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhcc
Confidence 99999999764 6888888999998888875 58999999999999999999887543
No 7
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=99.89 E-value=8.9e-23 Score=165.49 Aligned_cols=109 Identities=17% Similarity=0.129 Sum_probs=93.3
Q ss_pred hHHHHHHHHHHHHhhcC--CCeeeccC----------------CC--cEEEEEeccCCCCCCCcceEEEEEEeCCCCCCC
Q psy8772 3 YQEEQSNEIEALDSIYY--GDMEILEK----------------DP--HVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEE 62 (234)
Q Consensus 3 ~~EeQ~~ElEaLeSIY~--de~~~~~~----------------~p--~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~ 62 (234)
+.|.|.+||+||+|||| ++|++.+. .| ..|+|+|....+ ...+.|+|+||++||++
T Consensus 15 ~~e~Q~eElEaL~SIY~~~de~~v~d~~~~~~l~~~~~~~~~~~p~~~~~~i~l~~~~~----~~~i~L~v~lP~~YP~~ 90 (154)
T 2daw_A 15 SLQLQLLEMEMLFSMFPNQGEVKLEDVNALTNIKRYLEGTREALPPKIEFVITLQIEEP----KVKIDLQVTMPHSYPYL 90 (154)
T ss_dssp HHHHHHHHHHHHHHHCCSTTSEEESCGGGTHHHHHHHHTSCCSCCCCEEEEEEEEETTT----TEEEEEEEEECSSTTSS
T ss_pred hHHHHHHHHHHHHHhCCCCCeEEEeccchHHHHHHhhcccccCCCCceEEEEEEecCCC----CceEEEEEEcCCCCCCC
Confidence 68999999999999999 88988641 14 478877765432 24899999999999999
Q ss_pred CCeEEEecCCCCCHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHhHHH
Q psy8772 63 IPIIEIENCDNIDEDVERELKEYLLTQANEN-LGMVMIFTLVSSAQEWLSTKSDQ 116 (234)
Q Consensus 63 ~P~i~l~~~~~L~~~~~~~L~~~L~~~~ee~-lG~~mIf~lv~~lqE~l~~~~~~ 116 (234)
+|.|.+.+. ||+..+...|.+.|.+.++++ +|++|||+|++|||+++.+++.+
T Consensus 91 ~P~i~l~~~-~l~~~~~~~L~~~L~~~l~~~~lG~~mif~lve~lqe~~~~~l~~ 144 (154)
T 2daw_A 91 ALQLFGRSS-ELDRHQQLLLNKGLTSYIGTFDPGELCVCAAIQWLQDNSASYFLN 144 (154)
T ss_dssp CCEEEEECS-SSCHHHHHHHHHHHHHHHTTSCTTSCSHHHHHHHHHHTTHHHHCC
T ss_pred CCcEEEEeC-CCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhC
Confidence 999999875 899999999999999999876 79999999999999999888754
No 8
>4a9a_C Translation machinery-associated protein 46; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.06 E-value=7.1e-11 Score=93.16 Aligned_cols=55 Identities=22% Similarity=0.312 Sum_probs=41.3
Q ss_pred HHHHHHHHhhcc---CCcccCHhhHHHhHHhHHHHHHHHHHHHHhHHHhhhcCCCCchhhhccC
Q psy8772 129 IKAEEAAEQKRF---EGTVVTLETFIAWKAKFDKDMAHIIFEEKNKAKEKTAGKLTGREMFMQD 189 (234)
Q Consensus 129 ~~~~~e~e~~~~---~gT~VT~E~F~~Wk~~f~~e~~~~~~~~~~~~~~~~~~~ltGrqlFe~~ 189 (234)
.++-++.+|+++ +.||||+|+|++||+++..+++... ++ .+...++|||++|..+
T Consensus 19 lEe~iE~ER~kL~~~nlTpVT~EtF~~WKk~k~~ek~~~~---~~---~~~kk~~tGRei~~~g 76 (142)
T 4a9a_C 19 LEEFIETERGKLDKSKLTPITIANFAQWKKDHVIAKINAE---KK---LSSKRKPTGREIILKM 76 (142)
T ss_dssp HHHHHHTTGGGSCGGGCCCCCHHHHHHHHHHHHHHHHHHH---HH---HHTTSCCCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHHHHHHHHH---HH---HHHhhhhhhHHHHHhc
Confidence 445677888877 4699999999999999888775443 11 1235779999999875
No 9
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=96.31 E-value=0.019 Score=44.71 Aligned_cols=67 Identities=13% Similarity=0.172 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhhcCCCeeec----cCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772 5 EEQSNEIEALDSIYYGDMEIL----EKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC 71 (234)
Q Consensus 5 EeQ~~ElEaLeSIY~de~~~~----~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~ 71 (234)
..-..|+..|+.=-+..+.+. .++...+.+.|....+-.-..-.+.|.|.+|++||..||.|.+...
T Consensus 25 ~RL~kEl~~l~~~~~~gi~v~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~ 95 (136)
T 2a7l_A 25 KRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGE 95 (136)
T ss_dssp HHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESS
T ss_pred HHHHHHHHHHHhCCCCCEEEEEeeCccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCC
Confidence 344578888876444444421 2233566777764332112345789999999999999999998764
No 10
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=95.65 E-value=0.097 Score=41.19 Aligned_cols=67 Identities=10% Similarity=0.101 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhhcCCCeeecc--CCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772 5 EEQSNEIEALDSIYYGDMEILE--KDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC 71 (234)
Q Consensus 5 EeQ~~ElEaLeSIY~de~~~~~--~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~ 71 (234)
..-..|+..|+.--+..+.+.. ++...+.+.|....+-.-..-.+.|.|.+|++||..||.|.+...
T Consensus 7 ~RL~~E~~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 75 (152)
T 2aak_A 7 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSR 75 (152)
T ss_dssp HHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred HHHHHHHHHHHhCCCCCEEEEeCCCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecC
Confidence 4455788888865555554432 233455566653222112345789999999999999999998764
No 11
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=95.65 E-value=0.087 Score=42.41 Aligned_cols=67 Identities=9% Similarity=0.107 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhhcCCCeeecc--CCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772 5 EEQSNEIEALDSIYYGDMEILE--KDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC 71 (234)
Q Consensus 5 EeQ~~ElEaLeSIY~de~~~~~--~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~ 71 (234)
-.-..|+..|+.--+..+.+.. .+...+.+.|....+-.-..-.+.|.|.+|++||..||.|.+...
T Consensus 7 ~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~ 75 (169)
T 1ayz_A 7 RRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSE 75 (169)
T ss_dssp HHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred HHHHHHHHHHHhCCCCCEEEEecCCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccC
Confidence 3445789888875555554432 233456666653222112345789999999999999999999764
No 12
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=95.60 E-value=0.12 Score=41.03 Aligned_cols=68 Identities=10% Similarity=0.029 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhhcCCCeeec--cCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecCC
Q psy8772 5 EEQSNEIEALDSIYYGDMEIL--EKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENCD 72 (234)
Q Consensus 5 EeQ~~ElEaLeSIY~de~~~~--~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~~ 72 (234)
..-..|+..|+.--+..+.+. ..+...+.+.|....+-.-..-.+.|.|.+|++||..||.|.+....
T Consensus 16 ~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i 85 (158)
T 1zdn_A 16 RLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKI 85 (158)
T ss_dssp HHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCC
T ss_pred HHHHHHHHHHHhCCCCCEEEEECCCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccCc
Confidence 345578888886555555443 23446777777643221123457899999999999999999997753
No 13
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=95.58 E-value=0.076 Score=41.94 Aligned_cols=67 Identities=18% Similarity=0.226 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhhcCCCeee-c--cCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772 4 QEEQSNEIEALDSIYYGDMEI-L--EKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC 71 (234)
Q Consensus 4 ~EeQ~~ElEaLeSIY~de~~~-~--~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~ 71 (234)
...-..|+..|+.--+..+.+ . ..+...+.+.|.|..+ .-..-.+.|.|.+|++||..||.|.+...
T Consensus 6 ~~RL~kEl~~l~~~~~~~i~~~~~~~~~l~~w~~~I~P~~t-pyegg~f~~~i~fp~~YP~~PP~v~f~t~ 75 (155)
T 1wzv_A 6 SMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQP-PYHLKAFNLRISFPPEYPFKPPMIKFTTK 75 (155)
T ss_dssp HHHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEECCCST-TGGGEEEEEEEECCTTTTSSCCEEEESSC
T ss_pred HHHHHHHHHHHHhCCCCCEEEEecCCCchheEEEEEcCCCC-CCCCCEEEEEEECCCCCCCCCCcceeeCC
Confidence 344567888888765555554 2 2344677777664322 12345789999999999999999998764
No 14
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=95.46 E-value=0.12 Score=41.04 Aligned_cols=67 Identities=9% Similarity=0.080 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHh---hcCCCeee--ccCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772 5 EEQSNEIEALDS---IYYGDMEI--LEKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC 71 (234)
Q Consensus 5 EeQ~~ElEaLeS---IY~de~~~--~~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~ 71 (234)
..-..|+..|+. .-+..+.+ ..++...+.+.|....+-.-..-.+.|.|.+|++||..||.|.+...
T Consensus 11 ~RL~kEl~~l~~~~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 82 (159)
T 2bep_A 11 QRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITK 82 (159)
T ss_dssp HHHHHHHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred HHHHHHHHHHHhcCCCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeCC
Confidence 344567888875 22334433 23344677777763222112345789999999999999999999763
No 15
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=95.38 E-value=0.17 Score=40.02 Aligned_cols=68 Identities=9% Similarity=0.149 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhhcCCCeeec--cCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecCC
Q psy8772 5 EEQSNEIEALDSIYYGDMEIL--EKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENCD 72 (234)
Q Consensus 5 EeQ~~ElEaLeSIY~de~~~~--~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~~ 72 (234)
..-..|+..|+.-=+..+.+. .++...+.+.|....+-.-..-.+.|.|.+|++||..||.|.+....
T Consensus 12 ~RL~kEl~~l~~~~~~~i~~~p~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i 81 (156)
T 2e2c_A 12 KRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPC 81 (156)
T ss_dssp HHHHHHHHHHHHHCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCC
T ss_pred HHHHHHHHHHHhCCCCCEEEEECCCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCc
Confidence 445578888876434445442 23446777777633221123457899999999999999999997643
No 16
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=95.32 E-value=0.1 Score=41.91 Aligned_cols=66 Identities=12% Similarity=0.098 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhhcCCCeeec--cCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772 6 EQSNEIEALDSIYYGDMEIL--EKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC 71 (234)
Q Consensus 6 eQ~~ElEaLeSIY~de~~~~--~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~ 71 (234)
.-..|+..|+.--+..+.+. .++...+.+.|....+-.-..-.+.|.|.+|++||..||.|.+...
T Consensus 25 RL~kEl~~l~~~~~~gi~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~ 92 (166)
T 2ayv_A 25 RINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTK 92 (166)
T ss_dssp HHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC
T ss_pred HHHHHHHHHHhCCCCCEEEEEcCCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccC
Confidence 44568888876544445442 2345677777763322112345799999999999999999998764
No 17
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=95.29 E-value=0.11 Score=39.69 Aligned_cols=66 Identities=9% Similarity=0.050 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhhcCCCeee--ccCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772 6 EQSNEIEALDSIYYGDMEI--LEKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC 71 (234)
Q Consensus 6 eQ~~ElEaLeSIY~de~~~--~~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~ 71 (234)
.-..|+..|+.==+..+.+ ..++-..+.+.|....+-.-..-.+.+.|.+|++||..+|.|.+...
T Consensus 10 RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~ 77 (125)
T 2fo3_A 10 RIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQK 77 (125)
T ss_dssp HHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSS
T ss_pred HHHHHHHHHHhCCCCCEEEEeCcchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCC
Confidence 3456788887543344433 22344677777663322112345789999999999999999998764
No 18
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=95.22 E-value=0.16 Score=40.53 Aligned_cols=67 Identities=10% Similarity=0.064 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhhcCCCeeec--c-CCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772 5 EEQSNEIEALDSIYYGDMEIL--E-KDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC 71 (234)
Q Consensus 5 EeQ~~ElEaLeSIY~de~~~~--~-~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~ 71 (234)
..-..|+..|+.-=+..+.+. . .+...+.+.|....+-.-..-.+.|.|.+|++||..||.|.+.+.
T Consensus 7 ~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~ 76 (165)
T 2ucz_A 7 KRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPS 76 (165)
T ss_dssp HHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred HHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCC
Confidence 344568888876444445542 2 244566666653322112345789999999999999999999764
No 19
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=95.22 E-value=0.18 Score=39.03 Aligned_cols=67 Identities=9% Similarity=0.035 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhhcCCCeee--ccCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772 5 EEQSNEIEALDSIYYGDMEI--LEKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC 71 (234)
Q Consensus 5 EeQ~~ElEaLeSIY~de~~~--~~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~ 71 (234)
..-..|+..|+.==+..+.+ ..++...+.+.|....+-.-..-.+.|.|.+|++||..||.|.+...
T Consensus 23 ~RL~kEl~~l~~~~~~~~~~~~~~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~ 91 (136)
T 2h2y_A 23 YRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQK 91 (136)
T ss_dssp HHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSS
T ss_pred HHHHHHHHHHHhCCCCCeEEEeccccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCC
Confidence 34456888887543344433 22344677777763322112345789999999999999999998764
No 20
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=95.15 E-value=0.15 Score=40.30 Aligned_cols=66 Identities=14% Similarity=0.097 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhhcCCCeeec--cCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772 6 EQSNEIEALDSIYYGDMEIL--EKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC 71 (234)
Q Consensus 6 eQ~~ElEaLeSIY~de~~~~--~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~ 71 (234)
.-..|+..|+.-=+..+.+. .++...+.+.|....+-.-..-.+.|.|.+|++||..||.|.+...
T Consensus 9 RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 76 (154)
T 2c2v_B 9 RIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTK 76 (154)
T ss_dssp HHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC
T ss_pred HHHHHHHHHHhCCCCCEEEEECCCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecC
Confidence 34578888876544445442 2344677777753222112345789999999999999999999764
No 21
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=95.04 E-value=0.17 Score=40.24 Aligned_cols=66 Identities=9% Similarity=-0.083 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhhcCCCeeec--cC-CCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772 6 EQSNEIEALDSIYYGDMEIL--EK-DPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC 71 (234)
Q Consensus 6 eQ~~ElEaLeSIY~de~~~~--~~-~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~ 71 (234)
.-..|+..|+.-=+..+.+. .+ +...+.+.|....+-.-..-.+.|.|.+|++||..||.|.+...
T Consensus 7 RL~kEl~~l~~~~~~gi~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 75 (164)
T 3h8k_A 7 RLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCE 75 (164)
T ss_dssp HHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC
T ss_pred HHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCC
Confidence 34567888876544455442 23 44677777763322112345788999999999999999998764
No 22
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=95.04 E-value=0.11 Score=40.85 Aligned_cols=66 Identities=12% Similarity=0.103 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhhcCCCeeec--cCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772 6 EQSNEIEALDSIYYGDMEIL--EKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC 71 (234)
Q Consensus 6 eQ~~ElEaLeSIY~de~~~~--~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~ 71 (234)
.-..|+..|+.-=+..+.+. .++...+.+.|....+-.-..-.+.|.|.+|++||..||.|.+...
T Consensus 8 RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 75 (150)
T 1z2u_A 8 RIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTR 75 (150)
T ss_dssp HHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred HHHHHHHHHHhCCCCCEEEEECCCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecC
Confidence 34568888876544445432 2233566666663322112345789999999999999999998764
No 23
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=95.03 E-value=0.13 Score=41.24 Aligned_cols=66 Identities=12% Similarity=0.096 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhhcCCCeeec--cCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772 6 EQSNEIEALDSIYYGDMEIL--EKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC 71 (234)
Q Consensus 6 eQ~~ElEaLeSIY~de~~~~--~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~ 71 (234)
.-..|+..|+.-=+..+.+. .++...+.+.|....+-.-..-.+.|.|.+|++||..||.|.+...
T Consensus 23 RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~ 90 (165)
T 2c4o_A 23 RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTR 90 (165)
T ss_dssp HHHHHHHHHHSSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC
T ss_pred HHHHHHHHHHhCCCCCEEEEEcCCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecC
Confidence 44568888876433444432 3344677777763322112345789999999999999999998764
No 24
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=94.95 E-value=0.12 Score=40.52 Aligned_cols=64 Identities=16% Similarity=0.120 Sum_probs=41.3
Q ss_pred HHHHHHHHhhcCCCeeec--cCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772 8 SNEIEALDSIYYGDMEIL--EKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC 71 (234)
Q Consensus 8 ~~ElEaLeSIY~de~~~~--~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~ 71 (234)
..|+..|+.-=+..+.+. .++...+.+.|....+-.-..-.+.|.|.+|++||..||.|.+...
T Consensus 7 ~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 72 (149)
T 2r0j_A 7 TKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTK 72 (149)
T ss_dssp HHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSC
T ss_pred HHHHHHHHhCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccC
Confidence 467888876433444432 2233566666653222112345789999999999999999999764
No 25
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=94.91 E-value=0.17 Score=39.59 Aligned_cols=66 Identities=12% Similarity=0.137 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhhcCCCeee--ccC-CCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772 6 EQSNEIEALDSIYYGDMEI--LEK-DPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC 71 (234)
Q Consensus 6 eQ~~ElEaLeSIY~de~~~--~~~-~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~ 71 (234)
.-..|+..|+.-=+..+.+ ..+ +...+.+.|....+..-..-.+.|.|.+|++||..||.|.+...
T Consensus 5 RL~~El~~l~~~~~~~i~~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 73 (149)
T 1fxt_A 5 RIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTK 73 (149)
T ss_dssp HHHHHHHHHHHCGGGCCEEEESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSC
T ss_pred HHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCC
Confidence 3446788887543344433 223 34577777753322112345789999999999999999999763
No 26
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=94.89 E-value=0.13 Score=40.70 Aligned_cols=66 Identities=17% Similarity=0.125 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhhcCCCeeec--cCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772 6 EQSNEIEALDSIYYGDMEIL--EKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC 71 (234)
Q Consensus 6 eQ~~ElEaLeSIY~de~~~~--~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~ 71 (234)
.-..|+..|+.-=+..+.+. .++...+.+.|....+-.-..-.+.|.|.+|++||..||.|.+...
T Consensus 9 RL~kE~~~l~~~~~~~i~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 76 (155)
T 1jat_A 9 RIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTK 76 (155)
T ss_dssp HHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSC
T ss_pred HHHHHHHHHHhCCCCCEEEEECCCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecc
Confidence 34568888876434444432 2233566666653322112346799999999999999999998764
No 27
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=94.88 E-value=0.16 Score=39.85 Aligned_cols=66 Identities=12% Similarity=0.078 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhhcCCCeeec--cCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772 6 EQSNEIEALDSIYYGDMEIL--EKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC 71 (234)
Q Consensus 6 eQ~~ElEaLeSIY~de~~~~--~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~ 71 (234)
.-..|+..|+.-=+..+.+. .++...+.+.|....+..-..-.+.|.|.+|++||..+|.|.+...
T Consensus 8 RL~kEl~~l~~~~~~~i~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~ 75 (151)
T 4gpr_A 8 RIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTK 75 (151)
T ss_dssp HHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred HHHHHHHHHHhCCCCCEEEEEcCCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecC
Confidence 34567888876444444432 3344677777774322112345789999999999999999998764
No 28
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=94.86 E-value=0.16 Score=40.92 Aligned_cols=65 Identities=9% Similarity=0.034 Sum_probs=43.4
Q ss_pred HHHHHHHHHhhcCCCeeec--c-CCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772 7 QSNEIEALDSIYYGDMEIL--E-KDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC 71 (234)
Q Consensus 7 Q~~ElEaLeSIY~de~~~~--~-~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~ 71 (234)
-+.|+..|+.-=+..+.+. . .+...+.+.|....+-.-..-.+.|.|.||++||..||.|.+...
T Consensus 22 L~kEl~~l~~~~~~gi~~~p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~ 89 (172)
T 2awf_A 22 LRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITE 89 (172)
T ss_dssp HHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC
T ss_pred HHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCC
Confidence 3458888877544555542 2 244667766653322112345789999999999999999999765
No 29
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=94.79 E-value=0.25 Score=40.08 Aligned_cols=67 Identities=12% Similarity=0.087 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhhcCCCeeec--c-CCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772 5 EEQSNEIEALDSIYYGDMEIL--E-KDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC 71 (234)
Q Consensus 5 EeQ~~ElEaLeSIY~de~~~~--~-~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~ 71 (234)
..-..|+..|+.-=+..+.+. . .+...+.+.|....+-.-..-.+.|.|.||++||..||.|.+...
T Consensus 10 kRL~kEl~~l~~~~~~gi~~~~~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 79 (183)
T 3rz3_A 10 KALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTK 79 (183)
T ss_dssp HHHHHHHHHHHHSCCTTEEEEECTTCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred HHHHHHHHHHHhCCCCCEEEEecCccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCC
Confidence 345578888877555555443 2 234677777763322112345788999999999999999998764
No 30
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=94.75 E-value=0.16 Score=40.77 Aligned_cols=66 Identities=14% Similarity=0.062 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhhcCCCeeec--cCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772 6 EQSNEIEALDSIYYGDMEIL--EKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC 71 (234)
Q Consensus 6 eQ~~ElEaLeSIY~de~~~~--~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~ 71 (234)
.-..|+..|+.-=+..+.+. ..+...+.+.|....+-.-..-.+.|.|.+|++||..||.|.+.+.
T Consensus 8 RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~ 75 (169)
T 1yh2_A 8 RLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTP 75 (169)
T ss_dssp HHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred HHHHHHHHHHhCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecC
Confidence 34568888876544445442 2344666666653222112345789999999999999999999764
No 31
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=94.66 E-value=0.18 Score=40.56 Aligned_cols=66 Identities=12% Similarity=0.151 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhhcCCCeeec--cCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772 6 EQSNEIEALDSIYYGDMEIL--EKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC 71 (234)
Q Consensus 6 eQ~~ElEaLeSIY~de~~~~--~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~ 71 (234)
.-..|+..|+.--+..+.+. .++...+.+.|....+-.-..-.+.|.|.+|++||..||.|.+...
T Consensus 27 RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~ 94 (169)
T 1yrv_A 27 LLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITI 94 (169)
T ss_dssp HHHHHHHHHHHHCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSC
T ss_pred HHHHHHHHHHhCCCCCEEEEEcCCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCC
Confidence 34568888876554555442 2344677777763222112345789999999999999999999764
No 32
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=94.61 E-value=0.18 Score=42.30 Aligned_cols=104 Identities=16% Similarity=0.123 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhhcCCCeeec--cCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC---CCCCHHHHH
Q psy8772 6 EQSNEIEALDSIYYGDMEIL--EKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC---DNIDEDVER 80 (234)
Q Consensus 6 eQ~~ElEaLeSIY~de~~~~--~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~---~~L~~~~~~ 80 (234)
.-..|+..|+.--+..+.+. .++...+.+.|....+-.-..-.+.|.|.+|++||..||.|.+... .|+....-.
T Consensus 27 RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~~~~G~ 106 (216)
T 2pwq_A 27 RLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQTGA 106 (216)
T ss_dssp HHHHHHHHHHHSCTTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTTCB
T ss_pred HHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCCcCCCCcCCCCE
Confidence 34567888876444444432 3344677777763322112345789999999999999999999764 233311001
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Q psy8772 81 ELKEYLLTQANENLGMVMIFTLVSSAQEWLST 112 (234)
Q Consensus 81 ~L~~~L~~~~ee~lG~~mIf~lv~~lqE~l~~ 112 (234)
.....|.+.|.-.. -|.+++..|+..|.+
T Consensus 107 ICL~iL~~~WsP~~---ti~~VL~sI~sLL~~ 135 (216)
T 2pwq_A 107 ICLDVLKNEWSPAL---TIRTALLSIQALLSD 135 (216)
T ss_dssp BCCHHHHHHCCTTC---CHHHHHHHHHHHHHS
T ss_pred EEchhhcccCCCCC---cHHHHHHHHHHHHhC
Confidence 11223334443222 355666666666543
No 33
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=94.60 E-value=0.19 Score=39.87 Aligned_cols=67 Identities=13% Similarity=0.031 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhhcCCCeeecc-------CCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772 5 EEQSNEIEALDSIYYGDMEILE-------KDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC 71 (234)
Q Consensus 5 EeQ~~ElEaLeSIY~de~~~~~-------~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~ 71 (234)
..-..|+..|+.--+..+.... .+...+.+.|....+-.-..-.+.|.|.+|++||..||.|.+...
T Consensus 10 ~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 83 (161)
T 2grr_A 10 SRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPP 83 (161)
T ss_dssp HHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred HHHHHHHHHHHhCCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEecC
Confidence 3445788888865555544321 122455666653222112345689999999999999999999764
No 34
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=94.54 E-value=0.22 Score=40.93 Aligned_cols=66 Identities=12% Similarity=0.068 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhhcCCCeeec--cCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772 6 EQSNEIEALDSIYYGDMEIL--EKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC 71 (234)
Q Consensus 6 eQ~~ElEaLeSIY~de~~~~--~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~ 71 (234)
.-..|+..|+.-=+..+.+. ..+...+.+.|....+-.-..-.+.|.|.||++||..||.|.+...
T Consensus 52 RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~ 119 (194)
T 3bzh_A 52 RIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTR 119 (194)
T ss_dssp HHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred HHHHHHHHHHhCCCCCceeecccCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCC
Confidence 34568888876434444332 2344666666653322112345789999999999999999998764
No 35
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=94.37 E-value=0.28 Score=39.41 Aligned_cols=66 Identities=11% Similarity=0.060 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHh-h--c-----CC---Ceeec--c-CCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEec
Q psy8772 5 EEQSNEIEALDS-I--Y-----YG---DMEIL--E-KDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIEN 70 (234)
Q Consensus 5 EeQ~~ElEaLeS-I--Y-----~d---e~~~~--~-~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~ 70 (234)
-.-..|+..|+. . - ++ -+... . .+...+.+.|....+-.-..-.+.|.|.+|++||..||.|.+..
T Consensus 9 ~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t 88 (172)
T 2y9m_A 9 SRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQ 88 (172)
T ss_dssp HHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECT
T ss_pred HHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCCCEEEEee
Confidence 344578888887 4 1 22 12221 2 34467777776332211234578999999999999999999977
No 36
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=94.27 E-value=0.33 Score=39.37 Aligned_cols=68 Identities=10% Similarity=0.126 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhhcCCCeeec--cCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecCC
Q psy8772 5 EEQSNEIEALDSIYYGDMEIL--EKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENCD 72 (234)
Q Consensus 5 EeQ~~ElEaLeSIY~de~~~~--~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~~ 72 (234)
..-..|+..|+.-=+..+.+. .++...+.+.|....+-.-..-.+.|.|.||++||..||.|.+....
T Consensus 33 ~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i 102 (179)
T 1i7k_A 33 KRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPC 102 (179)
T ss_dssp HHHHHHHHHHHHHCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCC
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCC
Confidence 344568888876433444432 22234555555533221123457999999999999999999997643
No 37
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=94.22 E-value=0.22 Score=39.43 Aligned_cols=67 Identities=12% Similarity=0.069 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhhcCCCeeec--cC-----CCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772 5 EEQSNEIEALDSIYYGDMEIL--EK-----DPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC 71 (234)
Q Consensus 5 EeQ~~ElEaLeSIY~de~~~~--~~-----~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~ 71 (234)
..-..|+..|+.==+..+... .. +-..+.+.|....+-.-..-.+.|.|.+|++||..||.|.+...
T Consensus 7 ~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 80 (157)
T 2gjd_A 7 QRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAG 80 (157)
T ss_dssp HHHHHHHHHHHHCCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCTT
T ss_pred HHHHHHHHHHHhCCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccCC
Confidence 445578888876444444332 11 22455566653222112345789999999999999999998764
No 38
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=94.17 E-value=0.27 Score=40.42 Aligned_cols=67 Identities=9% Similarity=0.074 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhh---cCCCeee--ccCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772 5 EEQSNEIEALDSI---YYGDMEI--LEKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC 71 (234)
Q Consensus 5 EeQ~~ElEaLeSI---Y~de~~~--~~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~ 71 (234)
..-..|+..|..- -+..+.+ ..++...+.+.|....+..-..-.+.|.|.+|++||..||.|.+...
T Consensus 8 ~Rl~kEl~~l~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~ 79 (201)
T 3k9o_A 8 QRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITK 79 (201)
T ss_dssp HHHHHHHHHHHTCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred HHHHHHHHHHHhCCCCCCCCEEEEECCCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccC
Confidence 4445677777541 2333333 23345677777763322112345689999999999999999998763
No 39
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=94.01 E-value=0.24 Score=39.45 Aligned_cols=65 Identities=9% Similarity=0.069 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhhcCCCeeec--cC-CCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772 6 EQSNEIEALDSIYYGDMEIL--EK-DPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC 71 (234)
Q Consensus 6 eQ~~ElEaLeSIY~de~~~~--~~-~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~ 71 (234)
.-..|+..|+.=-+..+.+. .. +-..+.+.|.|..+ .-..-.+.|.|.||++||..+|.|.+...
T Consensus 18 RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~igp~~t-pyegg~f~~~i~fp~~YP~~pP~v~f~t~ 85 (167)
T 3fn1_B 18 LLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEG-YYQGGKFQFETEVPDAYNMVPPKVKCLTK 85 (167)
T ss_dssp HHHHHHHHHGGGSCTTEEEECSSSSCTTEEEEEECCSSS-TTTTCCEEEEEECCTTBTTBCCEEEECSC
T ss_pred HHHHHHHHHHhCCCCCEEEEeCCCCcceeEEEEECCCCC-ccCCCEEEEEEECCCCCCCCCCeeEecCC
Confidence 44578888887656665553 22 23567777754432 12345688999999999999999998764
No 40
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=93.94 E-value=0.25 Score=38.89 Aligned_cols=44 Identities=14% Similarity=0.091 Sum_probs=31.0
Q ss_pred CCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772 28 DPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC 71 (234)
Q Consensus 28 ~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~ 71 (234)
+...+.+.|....+-.-..-.+.+.|.+|++||..||.+.+...
T Consensus 27 ~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~ 70 (152)
T 2onu_A 27 STQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNK 70 (152)
T ss_dssp EEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred ccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecC
Confidence 33566777753222112345789999999999999999998763
No 41
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=93.92 E-value=0.25 Score=40.29 Aligned_cols=66 Identities=5% Similarity=-0.054 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhhcCCCeeec--cCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772 6 EQSNEIEALDSIYYGDMEIL--EKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC 71 (234)
Q Consensus 6 eQ~~ElEaLeSIY~de~~~~--~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~ 71 (234)
.-..|+..|+.=-+..+.+. .++-..+.+.|....+-.-..-.+.|.|.+|++||..||.|.+...
T Consensus 18 RL~kEl~~l~~~~~~~i~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~ 85 (187)
T 2f4w_A 18 RLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP 85 (187)
T ss_dssp HHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC
T ss_pred HHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCC
Confidence 44568888875434444332 2233566666653222112345789999999999999999998764
No 42
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=93.90 E-value=0.25 Score=39.48 Aligned_cols=45 Identities=11% Similarity=0.170 Sum_probs=32.5
Q ss_pred CCCcEEEEEeccCCCCCCC--cceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772 27 KDPHVFTIPIQSECVDDEH--QMNCLLRFQYTPKYPEEIPIIEIENC 71 (234)
Q Consensus 27 ~~p~~f~I~i~~~~~~~~~--~~~l~L~~~~p~~YP~~~P~i~l~~~ 71 (234)
.+...+.+.|....+-.-. .-.+.|.|.+|++||..+|.|.+...
T Consensus 47 ~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP~~pP~v~f~t~ 93 (167)
T 4ds2_A 47 DTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTP 93 (167)
T ss_dssp SSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred CcccEEEEEEECCCCCCccCCCCEEEEEEECCCCCCCCCCEEEEeCC
Confidence 3456777777643321123 46789999999999999999998764
No 43
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=93.61 E-value=0.65 Score=35.80 Aligned_cols=66 Identities=14% Similarity=0.139 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhhc-CCCeeec--cC-C--CcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772 6 EQSNEIEALDSIY-YGDMEIL--EK-D--PHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC 71 (234)
Q Consensus 6 eQ~~ElEaLeSIY-~de~~~~--~~-~--p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~ 71 (234)
.-..|+..|+.-- +..+.+. .. + -..+.+.|....+-.-..-.+.|.|.+|++||..+|.+.+...
T Consensus 10 RL~kEl~~l~~~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 81 (138)
T 1jat_B 10 RLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISK 81 (138)
T ss_dssp HHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBC
T ss_pred HHHHHHHHHHhcCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEcc
Confidence 4557888887542 3334332 21 2 3567777763322112345789999999999999999999764
No 44
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=93.59 E-value=0.22 Score=40.83 Aligned_cols=62 Identities=11% Similarity=0.160 Sum_probs=41.2
Q ss_pred HHHHHHHHHhhcCCCeeec------cCCCc---EEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772 7 QSNEIEALDSIYYGDMEIL------EKDPH---VFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC 71 (234)
Q Consensus 7 Q~~ElEaLeSIY~de~~~~------~~~p~---~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~ 71 (234)
-..|+..|+ -+..+.+. .++.. .+.+.|.|..+ .-..-.+.|.|.+|++||..||.|.+...
T Consensus 34 L~kEl~~l~--~~~~i~~~~~~~p~~~nl~~~~~w~~~I~p~~t-pyegg~f~~~i~fp~~YP~~PP~v~f~t~ 104 (190)
T 3o2u_A 34 LKRDLDSLD--LPPTVTLNVITSPDSADRSQSPKLEVIVRPDEG-YYNYGSINFNLDFNEVYPIEPPKVVCLKK 104 (190)
T ss_dssp HHHHHHTCC--CCTTEEEEEEECTTCCCTTSCCEEEEEECCSSS-TTTTCCEEEEEECCTTTTTSCCEEEECSC
T ss_pred HHHHHHhcc--CCCCEEEEecCCCCCccCCcCCeEEEEEcCCCC-CCCCCEEEEEEECCCCCCCCCceeEEecC
Confidence 345677776 23344442 22346 77888865432 12345688999999999999999998764
No 45
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=93.59 E-value=0.091 Score=41.44 Aligned_cols=63 Identities=11% Similarity=0.164 Sum_probs=40.3
Q ss_pred HHHHHHHHhhcCCCeeecc---CCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772 8 SNEIEALDSIYYGDMEILE---KDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC 71 (234)
Q Consensus 8 ~~ElEaLeSIY~de~~~~~---~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~ 71 (234)
..|+..|+.--+..+.... .+...+.+.|.|..+ .-..-.+.|.|.+|++||..||.|.+...
T Consensus 8 ~kEl~~l~~~~~~~~~~~~~~~~~l~~w~~~i~P~~t-pyegg~f~~~i~fp~~YP~~PP~v~f~t~ 73 (154)
T 1c4z_D 8 MKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNP-PYDKGAFRIEINFPAEYPFKPPKITFKTK 73 (154)
T ss_dssp HHHHTTCSSSCCSSCEEECSSCSSSSEEEEEECCCSS-SCCSCCEEEEEECCTTTTTSCCEEEESSC
T ss_pred HHHHHHHHhCCCCCEEEeeCCCCchheEEEEEeCCCC-CccCCeEEEEEEeCCCCCCCCCEEEEeCC
Confidence 4566666654444444322 233566666654332 12345688999999999999999998764
No 46
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=93.46 E-value=0.39 Score=38.28 Aligned_cols=67 Identities=10% Similarity=0.007 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhhcCCCeeec--cC-----CCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772 5 EEQSNEIEALDSIYYGDMEIL--EK-----DPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC 71 (234)
Q Consensus 5 EeQ~~ElEaLeSIY~de~~~~--~~-----~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~ 71 (234)
..-..|+..|+.==+..+... .. +...+.+.|....+-.-..-.+.|.|.+|++||..+|.|.+...
T Consensus 13 ~RL~kEl~~l~~~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t~ 86 (163)
T 3rcz_B 13 TRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPP 86 (163)
T ss_dssp HHHHHHHHHHHHSCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred HHHHHHHHHHHhCCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeCC
Confidence 344568888876555555432 22 23456666654322112356788999999999999999998764
No 47
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C
Probab=93.44 E-value=0.74 Score=36.41 Aligned_cols=66 Identities=11% Similarity=0.050 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhhc-CCCeeec--c-C--CCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772 6 EQSNEIEALDSIY-YGDMEIL--E-K--DPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC 71 (234)
Q Consensus 6 eQ~~ElEaLeSIY-~de~~~~--~-~--~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~ 71 (234)
.-..|+..|+.-- +..+.+. . + +...+.+.|....+-.-..-.+.|.|.+|++||..||.|.+...
T Consensus 25 RL~kEl~~l~~~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t~ 96 (156)
T 2q0v_A 25 RLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTK 96 (156)
T ss_dssp HHHHHHHHHHCC-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBC
T ss_pred HHHHHHHHHHhCCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEcc
Confidence 3456888887642 2334332 2 1 23567777763322112345789999999999999999999764
No 48
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Probab=93.12 E-value=0.5 Score=37.63 Aligned_cols=66 Identities=17% Similarity=0.099 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhhcCCC-eeec--cCC---CcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772 6 EQSNEIEALDSIYYGD-MEIL--EKD---PHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC 71 (234)
Q Consensus 6 eQ~~ElEaLeSIY~de-~~~~--~~~---p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~ 71 (234)
.-..|+..|+.=-++. +.+. .++ -..+.+.|....+-.-..-.+.|.|.||++||..||.+.+...
T Consensus 29 RL~kEl~~l~~~~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~ 100 (160)
T 2a4d_A 29 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTK 100 (160)
T ss_dssp HHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBC
T ss_pred HHHHHHHHHHhCCCCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecC
Confidence 3456888887643444 4332 222 3567777763322112345789999999999999999998765
No 49
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=92.99 E-value=0.37 Score=39.56 Aligned_cols=66 Identities=14% Similarity=0.115 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhhcC-------------CCeeec--cCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEec
Q psy8772 6 EQSNEIEALDSIYY-------------GDMEIL--EKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIEN 70 (234)
Q Consensus 6 eQ~~ElEaLeSIY~-------------de~~~~--~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~ 70 (234)
.-..|+..|+.-=+ ..+.+. .++...+.+.|....+-.-..-.+.|.|.||++||..||.|.+..
T Consensus 36 RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T 115 (193)
T 2f4z_A 36 RLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVT 115 (193)
T ss_dssp HHHHHHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS
T ss_pred HHHHHHHHHHhCCCccccccccccCCCCcEEEEEcCCCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCCCCCeEEEec
Confidence 34467777776332 233322 223356666665322211234578999999999999999999976
Q ss_pred C
Q psy8772 71 C 71 (234)
Q Consensus 71 ~ 71 (234)
.
T Consensus 116 ~ 116 (193)
T 2f4z_A 116 K 116 (193)
T ss_dssp C
T ss_pred C
Confidence 4
No 50
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=92.87 E-value=0.57 Score=40.11 Aligned_cols=67 Identities=9% Similarity=0.080 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHh---hcCCCeee--ccCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772 5 EEQSNEIEALDS---IYYGDMEI--LEKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC 71 (234)
Q Consensus 5 EeQ~~ElEaLeS---IY~de~~~--~~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~ 71 (234)
..-..|+..|.. .-+..+.+ ..++...+.+.|....+-.-..-.+.|.|.||++||..||.|.+...
T Consensus 60 ~RL~kEl~~l~~~~~~~~~gi~v~p~~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~ 131 (253)
T 3e46_A 60 QRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITK 131 (253)
T ss_dssp HHHHHHHHHHHHCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred HHHHHHHHHHHhCCCCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecCC
Confidence 344567777753 12333333 23344677777763322112345789999999999999999998663
No 51
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=92.48 E-value=0.53 Score=37.83 Aligned_cols=64 Identities=14% Similarity=0.088 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhhcCCCeeeccCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772 6 EQSNEIEALDSIYYGDMEILEKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC 71 (234)
Q Consensus 6 eQ~~ElEaLeSIY~de~~~~~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~ 71 (234)
.-..|+..|+.-= ..+. ..++...+.+.|....+-.-..-.+.|.|.+|++||..+|.|.+...
T Consensus 16 RL~~El~~l~~~~-~~v~-~~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~ 79 (171)
T 1yf9_A 16 RREMDYMRLCNST-RKVY-PSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNR 79 (171)
T ss_dssp HHHHHHHHHHSSS-SCEE-ECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred HHHHHHHHHHhCC-CCCC-CCCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecC
Confidence 3456777776421 1221 23344677777763322112345789999999999999999998663
No 52
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=92.39 E-value=0.24 Score=40.24 Aligned_cols=63 Identities=16% Similarity=0.118 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhhcCCCeeec-cCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772 6 EQSNEIEALDSIYYGDMEIL-EKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC 71 (234)
Q Consensus 6 eQ~~ElEaLeSIY~de~~~~-~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~ 71 (234)
.-..|+..|.. +.+.+. .++...+.+.|....+-.-..-.+.|.|.+|++||..||.|.+...
T Consensus 29 RL~kEl~~l~~---~g~~v~~~ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~ 92 (179)
T 2z5d_A 29 RMDTDVIKLIE---SKHEVTILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNK 92 (179)
T ss_dssp HHHHHHHHHHH---SSSCEEEEEETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred HHHHHHHhcCc---CCCEEEECCCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecC
Confidence 44567887762 333221 1233567776653222112345789999999999999999999764
No 53
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=91.94 E-value=0.26 Score=41.19 Aligned_cols=66 Identities=9% Similarity=0.041 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhhcCCCeeecc--CCCc-EEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772 6 EQSNEIEALDSIYYGDMEILE--KDPH-VFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC 71 (234)
Q Consensus 6 eQ~~ElEaLeSIY~de~~~~~--~~p~-~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~ 71 (234)
.-..|+..|+.--+..+.+.. ++.. .+.+.|....+-.-..-.+.|.|.+|++||..||.|.+...
T Consensus 6 RL~kEl~~l~~~~~~gi~~~p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~ 74 (215)
T 1tte_A 6 RIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTK 74 (215)
T ss_dssp HHHHHHHHHHTTTCTTCEECCCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTT
T ss_pred HHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCC
Confidence 345688888765444455432 2233 66766653211112234688999999999999999998764
No 54
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=91.91 E-value=1.1 Score=39.61 Aligned_cols=66 Identities=12% Similarity=0.136 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhhcCCCe-----ee-ccCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772 6 EQSNEIEALDSIYYGDM-----EI-LEKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC 71 (234)
Q Consensus 6 eQ~~ElEaLeSIY~de~-----~~-~~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~ 71 (234)
.-..|+..|+.=-|..+ .. ..++...+.+.|....+-.-..-.+.|.|.||++||..||.|.+...
T Consensus 80 RL~kEl~~L~k~~p~g~~~~i~v~~~ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~T~ 151 (323)
T 3ceg_A 80 RLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETT 151 (323)
T ss_dssp HHHHHHHHHHHHCCCCSSCCEEEEEESSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEECCS
T ss_pred HHHHHHHHHHhCCCCCcccceeecccCCCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEecc
Confidence 44568888876444321 11 22334566666653222112345789999999999999999998764
No 55
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=91.60 E-value=0.4 Score=38.01 Aligned_cols=62 Identities=18% Similarity=0.237 Sum_probs=39.8
Q ss_pred HHHHHHHHHhhcCCCeeec---cCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772 7 QSNEIEALDSIYYGDMEIL---EKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC 71 (234)
Q Consensus 7 Q~~ElEaLeSIY~de~~~~---~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~ 71 (234)
-..|+..|+ -+..+.+. ..+...+.+.|.|..+ .-..-.+.|.|.+|++||..||.|.+...
T Consensus 11 L~kEl~~l~--~~~~~~~~~~~~~~l~~w~~~igp~~t-pyegg~f~~~i~fp~~YP~~PP~v~f~t~ 75 (160)
T 1y8x_A 11 IQKDINELN--LPKTCDISFSDPDDLLNFKLVICPDEG-FYKSGKFVFSFKVGQGYPHDPPKVKCETM 75 (160)
T ss_dssp HHHHHHTCC--CCTTEEEECSSTTCTTEEEEEECCSSS-TTTTBCEEEEEECCTTTTTSCCEEEECSC
T ss_pred HHHHHHhcC--CCCCeEEEeccCCccceEEEEECCCCC-CCCCCEEEEEEeCCCcCCCCCCEEEEecC
Confidence 345777773 12334442 2234667777744322 12345689999999999999999999764
No 56
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=91.55 E-value=0.76 Score=41.74 Aligned_cols=66 Identities=12% Similarity=0.096 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhhcCCCeeec--cCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772 6 EQSNEIEALDSIYYGDMEIL--EKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC 71 (234)
Q Consensus 6 eQ~~ElEaLeSIY~de~~~~--~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~ 71 (234)
.-..|+..|..==+..+.+. .++...+.+.|....+-.-..-.+.+.|.+|++||..||.+.+.+.
T Consensus 7 RL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~ 74 (399)
T 4ddg_A 7 RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTR 74 (399)
T ss_dssp HHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSC
T ss_pred HHHHHHHHHHhCCCCCEEEEEcCCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeecc
Confidence 34567888876444444432 2233566677763322112346788999999999999999988663
No 57
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=90.72 E-value=0.46 Score=38.47 Aligned_cols=62 Identities=18% Similarity=0.237 Sum_probs=39.4
Q ss_pred HHHHHHHHHhhcCCCeeec---cCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772 7 QSNEIEALDSIYYGDMEIL---EKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC 71 (234)
Q Consensus 7 Q~~ElEaLeSIY~de~~~~---~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~ 71 (234)
-..|+..|. -+..+.+. .++-..+.+.|.|..+ .-..-.+.|.|.+|++||..||.|.+...
T Consensus 31 L~kEl~~l~--~~~~i~~~~p~~~nl~~W~~~igP~~t-pYegg~f~~~i~fp~~YP~~PP~v~F~t~ 95 (180)
T 2nvu_C 31 IQKDINELN--LPKTCDISFSDPDDLLNFKLVICPDEG-FYKSGKFVFSFKVGQGYPHDPPKVKCETM 95 (180)
T ss_dssp HHHHHHTCC--CCTTEEEECSSTTCTTEEEEEECCCSG-GGTTBCEEEEEECCTTTTTSCCEEEECSC
T ss_pred HHHHHHhcC--CCCCeEEEecccccccceEEEECCCCC-CCCCCEEEEEEeCCCcCCCCCCcCceecc
Confidence 345677663 12334432 2234667777744322 12245689999999999999999999764
No 58
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Probab=90.46 E-value=0.2 Score=40.89 Aligned_cols=66 Identities=14% Similarity=0.183 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhhc---CCCeeec--cCCCcEEEEEeccC-CCCCCCc-----------ceEEEEEEeCCCCCCCCCeEEE
Q psy8772 6 EQSNEIEALDSIY---YGDMEIL--EKDPHVFTIPIQSE-CVDDEHQ-----------MNCLLRFQYTPKYPEEIPIIEI 68 (234)
Q Consensus 6 eQ~~ElEaLeSIY---~de~~~~--~~~p~~f~I~i~~~-~~~~~~~-----------~~l~L~~~~p~~YP~~~P~i~l 68 (234)
.-..|+..|+.-= ++.+.+. .++-..+.+.|... .+..-.. -.+.|.|.||++||..||.|.+
T Consensus 31 RL~kEl~~l~~~~~~~~~~~~~~p~~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~~YP~~PP~V~f 110 (186)
T 1zuo_A 31 RLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRV 110 (186)
T ss_dssp HHHHHHHHHHTSHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTSSCCEEEE
T ss_pred HHHHHHHHHHhCCCCCCCcEEEEEcCCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECCCCCCCCCCeEEE
Confidence 3456777776432 2334332 22335666666642 2110011 4689999999999999999998
Q ss_pred ecC
Q psy8772 69 ENC 71 (234)
Q Consensus 69 ~~~ 71 (234)
...
T Consensus 111 ~tp 113 (186)
T 1zuo_A 111 VLP 113 (186)
T ss_dssp EES
T ss_pred eCC
Confidence 764
No 59
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}
Probab=90.10 E-value=0.47 Score=38.13 Aligned_cols=66 Identities=17% Similarity=0.107 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhhcCCC-eee--ccCC---CcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772 6 EQSNEIEALDSIYYGD-MEI--LEKD---PHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC 71 (234)
Q Consensus 6 eQ~~ElEaLeSIY~de-~~~--~~~~---p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~ 71 (234)
.-..|+..|+.=-++. +.+ ..++ -..+.+.|....+-.-..-.+.|.|.||++||..+|.+.+...
T Consensus 39 RL~kEl~~l~~~~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~ 110 (170)
T 2hlw_A 39 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTK 110 (170)
T ss_dssp HHHHHHHHHHHCCGGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBC
T ss_pred HHHHHHHHHHhCCCCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEecc
Confidence 3456788887532333 332 2222 3467777763222112244678999999999999999998764
No 60
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=89.87 E-value=0.17 Score=40.30 Aligned_cols=26 Identities=19% Similarity=0.416 Sum_probs=23.0
Q ss_pred cceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772 46 QMNCLLRFQYTPKYPEEIPIIEIENC 71 (234)
Q Consensus 46 ~~~l~L~~~~p~~YP~~~P~i~l~~~ 71 (234)
...+.|.|.+|.+||..||.|.+...
T Consensus 84 kyeFkLefdiP~tYP~tPPeI~Fp~l 109 (168)
T 3kpa_A 84 KYEFEMNFDIPVTYPQAPPEIALPEL 109 (168)
T ss_dssp EEEEEEEEECCTTTTTSCCCCBCGGG
T ss_pred eeEEEEEEeCCccCCCCCCEeecccc
Confidence 35789999999999999999999764
No 61
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=88.94 E-value=0.22 Score=40.17 Aligned_cols=24 Identities=21% Similarity=0.427 Sum_probs=21.7
Q ss_pred ceEEEEEEeCCCCCCCCCeEEEec
Q psy8772 47 MNCLLRFQYTPKYPEEIPIIEIEN 70 (234)
Q Consensus 47 ~~l~L~~~~p~~YP~~~P~i~l~~ 70 (234)
..+.|.|.+|.+||..||.|.+..
T Consensus 83 y~F~L~~~fPe~YP~~PPeV~F~~ 106 (172)
T 2z6o_A 83 YEFDIEFDIPITYPTTAPEIAVPE 106 (172)
T ss_dssp EEEEEEEECCTTTTTSCCCCBCGG
T ss_pred eEEEEEEECCCCCCCCCCeeeeCC
Confidence 478999999999999999999855
No 62
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=77.10 E-value=2 Score=33.69 Aligned_cols=63 Identities=16% Similarity=0.198 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHhhcCCC---eeeccCCC-----cEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEec
Q psy8772 4 QEEQSNEIEALDSIYYGD---MEILEKDP-----HVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIEN 70 (234)
Q Consensus 4 ~EeQ~~ElEaLeSIY~de---~~~~~~~p-----~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~ 70 (234)
.+.-..++..+-+-|++- .....+.. ..=+|.+.-. .....+-+.|.+|.+||..+|.+.+..
T Consensus 22 ~d~t~~dv~~vl~~yp~L~p~~~~y~G~~~~LL~l~GtIpv~y~----g~~y~iPi~Iwlp~~YP~~pP~vfv~p 92 (146)
T 3obq_A 22 RDLTVRETVNVITLYKDLKPVLDSYGTGSRELMNLTGTIPVPYR----GNTYNIPICLWLLDTYPYNPPICFVKP 92 (146)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEEESSSTTCEEEEEEEEEEEECS----SCEEEEEEEEECCTTTTTSCCEEEECC
T ss_pred cchhHHHHHHHHHhCCCCceEeeeeeCChheEEEEEEEeeeeec----CccccceEEEEeCccCCCCCCEEEEeC
Confidence 344456788888889763 11111211 1112222111 123456689999999999999998865
No 63
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=76.52 E-value=2.1 Score=34.19 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=21.3
Q ss_pred ceEEEEEEeCCCCCCCCCeEEEec
Q psy8772 47 MNCLLRFQYTPKYPEEIPIIEIEN 70 (234)
Q Consensus 47 ~~l~L~~~~p~~YP~~~P~i~l~~ 70 (234)
..+-|.|.+|.+||..+|.+.+..
T Consensus 81 Yn~pi~IwlP~~YP~~PP~v~v~p 104 (162)
T 3r3q_A 81 HSIPVIMWVPSMYPVKPPFISINL 104 (162)
T ss_dssp CEEEEEEECCTTTTTSCCEEEECG
T ss_pred ccccEEEEeCcccCCCCCEEEEEC
Confidence 458899999999999999999854
No 64
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=75.25 E-value=15 Score=29.89 Aligned_cols=46 Identities=13% Similarity=0.167 Sum_probs=32.7
Q ss_pred eeeccCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecCC
Q psy8772 22 MEILEKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENCD 72 (234)
Q Consensus 22 ~~~~~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~~ 72 (234)
+..+++.-..+++++.-. ....-.|.|.++.+||.++|.+...-+.
T Consensus 18 l~~id~~~~~i~l~~~D~-----~gR~H~l~v~l~~~yp~~~P~~~~DlP~ 63 (186)
T 3zqs_A 18 LVYADTCFSTIKLKAEDA-----SGREHLITLKLKAKYPAESPDYFVDFPV 63 (186)
T ss_dssp EEEECTTSSEEEEEEECT-----TSCEEEEEEECCTTTTTSCCEEECCCSS
T ss_pred eeeecCCccEEEEEEEeC-----CCCeEEEEEEECCCCCCCCCeeEEcCCC
Confidence 444444446777777532 3467788999999999999988875554
No 65
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=73.30 E-value=5.2 Score=25.21 Aligned_cols=36 Identities=11% Similarity=0.252 Sum_probs=31.3
Q ss_pred CCCeEEEecCCCCCHHHHHHHHHHHHHHHHhcCCch
Q psy8772 62 EIPIIEIENCDNIDEDVERELKEYLLTQANENLGMV 97 (234)
Q Consensus 62 ~~P~i~l~~~~~L~~~~~~~L~~~L~~~~ee~lG~~ 97 (234)
..|.|.+....+.+.++...|.+.|.+...+.+|.|
T Consensus 2 ~MP~i~i~~~~g~s~e~k~~l~~~l~~~l~~~lg~p 37 (63)
T 2x4k_A 2 MMPIVNVKLLEGRSDEQLKNLVSEVTDAVEKTTGAN 37 (63)
T ss_dssp CCCEEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 369999988889999999999999999988877765
No 66
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=72.60 E-value=4.5 Score=25.61 Aligned_cols=34 Identities=18% Similarity=0.340 Sum_probs=29.4
Q ss_pred CeEEEecCCCCCHHHHHHHHHHHHHHHHhcCCch
Q psy8772 64 PIIEIENCDNIDEDVERELKEYLLTQANENLGMV 97 (234)
Q Consensus 64 P~i~l~~~~~L~~~~~~~L~~~L~~~~ee~lG~~ 97 (234)
|.|.+....|.+.+++..|.+.|.+...+.+|.+
T Consensus 1 P~i~i~~~~grs~eqk~~l~~~i~~~l~~~lg~~ 34 (61)
T 2opa_A 1 PYVTVKMLEGRTDEQKRNLVEKVTEAVKETTGAS 34 (61)
T ss_dssp CEEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 7788877778899999999999999998877765
No 67
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=72.53 E-value=5 Score=25.96 Aligned_cols=33 Identities=30% Similarity=0.414 Sum_probs=29.3
Q ss_pred CeEEEecCCCCCHHHHHHHHHHHHHHHHhcCCch
Q psy8772 64 PIIEIENCDNIDEDVERELKEYLLTQANENLGMV 97 (234)
Q Consensus 64 P~i~l~~~~~L~~~~~~~L~~~L~~~~ee~lG~~ 97 (234)
|.|.|.. .+.+.+++..|.+.|.+.+.+.+|.+
T Consensus 1 P~I~I~~-~grt~eqK~~L~~~it~~~~~~lg~~ 33 (62)
T 3m20_A 1 PVLIVYG-PKLDVGKKREFVERLTSVAAEIYGMD 33 (62)
T ss_dssp CEEEEEC-SCCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CEEEEEE-CCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 7888887 88999999999999999998887765
No 68
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=71.58 E-value=4.9 Score=25.50 Aligned_cols=34 Identities=12% Similarity=0.171 Sum_probs=29.4
Q ss_pred CeEEEecCCCCCHHHHHHHHHHHHHHHHhcCCch
Q psy8772 64 PIIEIENCDNIDEDVERELKEYLLTQANENLGMV 97 (234)
Q Consensus 64 P~i~l~~~~~L~~~~~~~L~~~L~~~~ee~lG~~ 97 (234)
|.|.+....|.+.+++..|.+.|.+...+.+|.+
T Consensus 1 P~i~I~~~~grs~e~k~~l~~~i~~~l~~~lg~p 34 (62)
T 1otf_A 1 PIAQLYIIEGRTDEQKETLIRQVSEAMANSLDAP 34 (62)
T ss_dssp CEEEEEEESCCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 7788877778999999999999999988877765
No 69
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=71.33 E-value=5.4 Score=25.49 Aligned_cols=35 Identities=20% Similarity=0.252 Sum_probs=30.3
Q ss_pred CCeEEEecCCCCCHHHHHHHHHHHHHHHHhcCCch
Q psy8772 63 IPIIEIENCDNIDEDVERELKEYLLTQANENLGMV 97 (234)
Q Consensus 63 ~P~i~l~~~~~L~~~~~~~L~~~L~~~~ee~lG~~ 97 (234)
.|.|.+....+.+.++...|.+.|.+...+.+|-+
T Consensus 1 MP~i~i~~~~g~s~eqk~~l~~~lt~~l~~~lg~~ 35 (64)
T 3abf_A 1 MVVLKVTLLEGRPPEKKRELVRRLTEMASRLLGEP 35 (64)
T ss_dssp CEEEEEEEETTCCHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 47888887788999999999999999998888765
No 70
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=69.72 E-value=5.6 Score=25.86 Aligned_cols=34 Identities=26% Similarity=0.333 Sum_probs=29.6
Q ss_pred CeEEEecCCCCCHHHHHHHHHHHHHHHHhcCCch
Q psy8772 64 PIIEIENCDNIDEDVERELKEYLLTQANENLGMV 97 (234)
Q Consensus 64 P~i~l~~~~~L~~~~~~~L~~~L~~~~ee~lG~~ 97 (234)
|.|.|.-..|.+.+++..|.+.|.+...+.+|.|
T Consensus 1 P~i~I~~~~Grs~eqk~~L~~~it~~~~~~lg~p 34 (65)
T 3ry0_A 1 PLIRVTLLEGRSPQEVAALGEALTAAAHETLGTP 34 (65)
T ss_dssp CEEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 7788877789999999999999999998877765
No 71
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=66.99 E-value=5.6 Score=26.53 Aligned_cols=35 Identities=14% Similarity=0.199 Sum_probs=30.6
Q ss_pred CCeEEEecCCCCCHHHHHHHHHHHHHHHHhcCCch
Q psy8772 63 IPIIEIENCDNIDEDVERELKEYLLTQANENLGMV 97 (234)
Q Consensus 63 ~P~i~l~~~~~L~~~~~~~L~~~L~~~~ee~lG~~ 97 (234)
.|.|.|.-..|.+.+++..|.+.|.+.+.+.+|.+
T Consensus 1 MP~I~I~~~~grs~eqK~~L~~~it~~l~~~lg~p 35 (72)
T 3mb2_A 1 MLLLRITMLEGRSTEQKAELARALSAAAAAAFDVP 35 (72)
T ss_dssp CEEEEEEEESCCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 48888887789999999999999999998887766
No 72
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=66.37 E-value=7.2 Score=25.52 Aligned_cols=34 Identities=18% Similarity=0.157 Sum_probs=29.5
Q ss_pred CeEEEecCC---CCCHHHHHHHHHHHHHHHHhcCCch
Q psy8772 64 PIIEIENCD---NIDEDVERELKEYLLTQANENLGMV 97 (234)
Q Consensus 64 P~i~l~~~~---~L~~~~~~~L~~~L~~~~ee~lG~~ 97 (234)
|.|.|.-.. +.+.+++..|.+.|.+.+.+.+|.+
T Consensus 1 P~i~I~~~~~~~grs~eqK~~l~~~lt~~l~~~lg~p 37 (67)
T 3m21_A 1 PFINIKLVPENGGPTNEQKQQLIEGVSDLMVKVLNKN 37 (67)
T ss_dssp CEEEEEECCBTTBSCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHCcC
Confidence 778888777 8999999999999999998877765
No 73
>3ej9_A Alpha-subunit of trans-3-chloroacrylic acid dehal; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej3_A 1s0y_A 3ej7_A
Probab=62.59 E-value=8.9 Score=25.99 Aligned_cols=35 Identities=23% Similarity=0.290 Sum_probs=30.3
Q ss_pred CCeEEEecCCCCCHHHHHHHHHHHHHHHHhcCCch
Q psy8772 63 IPIIEIENCDNIDEDVERELKEYLLTQANENLGMV 97 (234)
Q Consensus 63 ~P~i~l~~~~~L~~~~~~~L~~~L~~~~ee~lG~~ 97 (234)
.|.|.|.-..|.+.+++..|...|.+...+.+|.+
T Consensus 1 MP~I~I~~~~Grs~eqK~~L~~~it~~l~~~lg~p 35 (76)
T 3ej9_A 1 MPMISCDMRYGRTDEQKRALSAGLLRVISEATGEP 35 (76)
T ss_dssp -CEEEEEEETTCCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHCcC
Confidence 48889888889999999999999999998877765
No 74
>3qc5_X Platelet binding protein GSPB; carbohydrate/sugar binding, sugar binding protein; HET: GOL; 1.40A {Streptococcus gordonii} PDB: 3qc6_X 4i8e_X* 3qd1_X*
Probab=58.82 E-value=19 Score=32.05 Aligned_cols=40 Identities=18% Similarity=0.206 Sum_probs=34.7
Q ss_pred ceEEEEEEeCCCCCCCCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy8772 47 MNCLLRFQYTPKYPEEIPIIEIENCDNIDEDVERELKEYLLT 88 (234)
Q Consensus 47 ~~l~L~~~~p~~YP~~~P~i~l~~~~~L~~~~~~~L~~~L~~ 88 (234)
-.+.|.+.|+|.+|. +.+.+..+.+|++.++.+++..+..
T Consensus 270 G~fklviKy~P~vP~--~KV~V~DPnnLTd~EKekVkeaVKk 309 (360)
T 3qc5_X 270 GQFKLIIRFRIKTPE--NTVFVNNPNQLTEVEKNLVREAVKK 309 (360)
T ss_dssp TEEEEEEECCCCCCS--SCEEESCTTSCCHHHHHHHHHHHHH
T ss_pred ccEEEEEecCCCCCC--cceEecCcccCCHHHHHHHHHHHHH
Confidence 457788899999995 6788888999999999999999965
No 75
>3mlc_A FG41 malonate semialdehyde decarboxylase; tautomerase superfamily, malonate semialdehyde decarboxylase alpha-beta-motif; 2.22A {Coryneform bacterium} SCOP: d.80.1.0 PDB: 3mjz_A
Probab=52.41 E-value=27 Score=26.37 Aligned_cols=44 Identities=7% Similarity=0.054 Sum_probs=34.0
Q ss_pred EEeCCCC---CC--CCCeEEEecCCCCCHHHHHHHHHHHHHHHHhcCCch
Q psy8772 53 FQYTPKY---PE--EIPIIEIENCDNIDEDVERELKEYLLTQANENLGMV 97 (234)
Q Consensus 53 ~~~p~~Y---P~--~~P~i~l~~~~~L~~~~~~~L~~~L~~~~ee~lG~~ 97 (234)
+.++++| +. ..+.|.+....|-+.+++..|.+.|.+.. +.+|.+
T Consensus 50 ~~~~~~ylg~~rs~~~v~I~I~~~~gRt~EqK~~L~~~it~~l-~~lg~~ 98 (136)
T 3mlc_A 50 IIAEDAGLGFQRSPSVVIIHVFTQAGRTIETKQRVFAAITESL-APIGVA 98 (136)
T ss_dssp EEECCTTSSCCCCSCCEEEEEEEETTCCHHHHHHHHHHHHHHH-TTTTCC
T ss_pred ccccccccCcCCCCCeEEEEEEECCCCCHHHHHHHHHHHHHHH-HHcCCC
Confidence 4567777 22 23567777777899999999999999999 888764
No 76
>3ej9_B Beta-subunit of trans-3-chloroacrylic acid dehalo; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej7_B 3ej3_B 1s0y_B
Probab=47.24 E-value=25 Score=23.99 Aligned_cols=34 Identities=18% Similarity=0.308 Sum_probs=29.9
Q ss_pred CeEEEecCCCCCHHHHHHHHHHHHHHHHhcCCch
Q psy8772 64 PIIEIENCDNIDEDVERELKEYLLTQANENLGMV 97 (234)
Q Consensus 64 P~i~l~~~~~L~~~~~~~L~~~L~~~~ee~lG~~ 97 (234)
|.+.+.-.+|.+.+++..|...+.+..-+.+|.+
T Consensus 1 Pi~qi~i~EGRT~EQK~~lI~~VT~a~~eslgap 34 (70)
T 3ej9_B 1 PFIECHIATGLSVARKQQLIRDVIDVTNKSIGSD 34 (70)
T ss_dssp CEEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CeeEEEEecCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 6777777889999999999999999988888876
No 77
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A*
Probab=46.75 E-value=27 Score=23.30 Aligned_cols=34 Identities=21% Similarity=0.252 Sum_probs=28.0
Q ss_pred CeEEEecCCC-CCHHHHHHHHHHHHHHHHhcCCch
Q psy8772 64 PIIEIENCDN-IDEDVERELKEYLLTQANENLGMV 97 (234)
Q Consensus 64 P~i~l~~~~~-L~~~~~~~L~~~L~~~~ee~lG~~ 97 (234)
|.|.+.-..| |+.++...|.+.|.+...+.+|.+
T Consensus 1 P~I~I~l~~Grls~eqk~~L~~~l~~~l~~~lgip 35 (76)
T 1gyx_A 1 PHIDIKCFPRELDEQQKAALAADITDVIIRHLNSK 35 (76)
T ss_dssp CEEEEEESCCCCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 7788876666 599999999999999888877755
No 78
>2aal_A Malonate semialdehyde decarboxylase; tautomerase superfamily, beta-alpha-beta, homotrimeric, LYAS; 1.65A {Pseudomonas pavonaceae} SCOP: d.80.1.6 PDB: 2aag_A 2aaj_A
Probab=34.36 E-value=41 Score=24.77 Aligned_cols=35 Identities=9% Similarity=0.148 Sum_probs=29.3
Q ss_pred CCeEEEecCCCCCHHHHHHHHHHHHHHHHhcCCch
Q psy8772 63 IPIIEIENCDNIDEDVERELKEYLLTQANENLGMV 97 (234)
Q Consensus 63 ~P~i~l~~~~~L~~~~~~~L~~~L~~~~ee~lG~~ 97 (234)
.|.|.+....+.+..+...|.+.+.+...+.+|.|
T Consensus 1 MP~i~I~~~~~~~~e~k~~l~~~i~~al~~~~g~p 35 (131)
T 2aal_A 1 XPLLKFDLFYGRTDAQIKSLLDAAHGAMVDAFGVP 35 (131)
T ss_dssp -CEEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 48888888888999999999999998888777766
No 79
>3mlc_A FG41 malonate semialdehyde decarboxylase; tautomerase superfamily, malonate semialdehyde decarboxylase alpha-beta-motif; 2.22A {Coryneform bacterium} SCOP: d.80.1.0 PDB: 3mjz_A
Probab=30.89 E-value=37 Score=25.57 Aligned_cols=34 Identities=18% Similarity=0.308 Sum_probs=29.6
Q ss_pred CeEEEecCCCCCHHHHHHHHHHHHHHHHhcCCch
Q psy8772 64 PIIEIENCDNIDEDVERELKEYLLTQANENLGMV 97 (234)
Q Consensus 64 P~i~l~~~~~L~~~~~~~L~~~L~~~~ee~lG~~ 97 (234)
|.+.|.-..|.+.+++..|.+.+.+...+.+|.|
T Consensus 1 P~v~I~l~~Grs~e~k~~L~~~it~al~e~~~vP 34 (136)
T 3mlc_A 1 PLIRIDLTSDRSREQRRAIADAVHDALVEVLAIP 34 (136)
T ss_dssp CEEEEEEETTSCSHHHHHHHHHHHHHHHHHHCCC
T ss_pred CEEEEEEeCCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 7788877888999999999999999888877776
No 80
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=26.90 E-value=48 Score=32.09 Aligned_cols=51 Identities=12% Similarity=0.236 Sum_probs=31.3
Q ss_pred CcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecCCCCCHHHHHHHHHHH
Q psy8772 29 PHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENCDNIDEDVERELKEYL 86 (234)
Q Consensus 29 p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~~~L~~~~~~~L~~~L 86 (234)
|..++|+|.|. ....+.|.|.-+.+|| .=.+.|....+--..++..|+...
T Consensus 85 Pq~~~~~Lr~g-----~~~~f~~~~~~~~~~p--vDly~LmD~S~SM~ddi~~lk~l~ 135 (690)
T 3fcs_B 85 PQRIALRLRPD-----DSKNFSIQVRQVEDYP--VDIYYLMDLSYSMKDDLWSIQNLG 135 (690)
T ss_dssp SCEEEEEECTT-----CEEEEEEEEECCBTCC--EEEEEEEECSGGGHHHHHHTTTTT
T ss_pred CceEEEEeccC-----CcEEEEEEEeccCCCC--ccEEEEecCCcchHHHHHHHHHHH
Confidence 56777777763 3578999999999999 333444443333334444444433
No 81
>1mww_A Hypothetical protein HI1388.1; structural genomics, structure 2 function project, S2F, unknown function; HET: GLU; 2.08A {Haemophilus influenzae} SCOP: d.80.1.4
Probab=26.49 E-value=1e+02 Score=22.39 Aligned_cols=35 Identities=23% Similarity=0.333 Sum_probs=29.5
Q ss_pred CCeEEEecCCCCCHHHHHHHHHHHHHHHHhcCCch
Q psy8772 63 IPIIEIENCDNIDEDVERELKEYLLTQANENLGMV 97 (234)
Q Consensus 63 ~P~i~l~~~~~L~~~~~~~L~~~L~~~~ee~lG~~ 97 (234)
.|.|.+....|.+.++...|.+.|.+...+.+|.+
T Consensus 59 ~~~i~i~~~~grt~eqK~~l~~~l~~~l~~~lg~~ 93 (128)
T 1mww_A 59 YTVIEINLMAGRMEGTKKRLIKMLFSELEYKLGIR 93 (128)
T ss_dssp CEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred cEEEEEEECCCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 46778877788999999999999999998877764
No 82
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=25.84 E-value=82 Score=22.23 Aligned_cols=38 Identities=16% Similarity=0.251 Sum_probs=30.7
Q ss_pred CCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHhcCCch
Q psy8772 60 PEEIPIIEIENCDNIDEDVERELKEYLLTQANENLGMV 97 (234)
Q Consensus 60 P~~~P~i~l~~~~~L~~~~~~~L~~~L~~~~ee~lG~~ 97 (234)
++-.+.++|....|.+.++...+.+.|.+...+.+|-+
T Consensus 53 ~~~~~~i~i~~~~g~~~eqk~~l~~~i~~~l~~~lgi~ 90 (113)
T 1hfo_A 53 TNPAAFGTLMSIGGIEPSRNRDHSAKLFDHLNTKLGIP 90 (113)
T ss_dssp CSSCEEEEEEESSSCSHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCCeEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 34446678887778999999999999999998887764
No 83
>2aal_A Malonate semialdehyde decarboxylase; tautomerase superfamily, beta-alpha-beta, homotrimeric, LYAS; 1.65A {Pseudomonas pavonaceae} SCOP: d.80.1.6 PDB: 2aag_A 2aaj_A
Probab=25.84 E-value=1.1e+02 Score=22.23 Aligned_cols=33 Identities=9% Similarity=0.138 Sum_probs=27.2
Q ss_pred CeEEEecCCCCCHHHHHHHHHHHHHHHHhcCCch
Q psy8772 64 PIIEIENCDNIDEDVERELKEYLLTQANENLGMV 97 (234)
Q Consensus 64 P~i~l~~~~~L~~~~~~~L~~~L~~~~ee~lG~~ 97 (234)
+.|.+. ..|.+.++...|.+.|.+...+.+|.+
T Consensus 67 ~~I~i~-~~grt~eqK~~l~~~l~~~l~~~lg~~ 99 (131)
T 2aal_A 67 VLLTVI-SRPRSEEQKVCFYKLLTGALERDCGIS 99 (131)
T ss_dssp EEEEEE-ESCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred EEEEEE-eCCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 457777 678999999999999999988877754
No 84
>3c6v_A Probable tautomerase/dehalogenase AU4130; aspergillus fumigatus trimeric thermophilic probable tautomerase/dehalogenase; HET: MSE; 1.90A {Aspergillus fumigatus AF293}
Probab=25.55 E-value=1e+02 Score=23.95 Aligned_cols=34 Identities=15% Similarity=0.217 Sum_probs=31.0
Q ss_pred CCeEEEecCCC-CCHHHHHHHHHHHHHHHHhcCCch
Q psy8772 63 IPIIEIENCDN-IDEDVERELKEYLLTQANENLGMV 97 (234)
Q Consensus 63 ~P~i~l~~~~~-L~~~~~~~L~~~L~~~~ee~lG~~ 97 (234)
.|.+.|.-..| ++.+++..|.+.+.+...+. |.|
T Consensus 22 MP~v~I~~~~G~~t~eqk~~L~~~It~alve~-g~P 56 (161)
T 3c6v_A 22 MPRWLIQHSPNTLTPEEKSHLAQQITQAYVGF-GLP 56 (161)
T ss_dssp CCEEEEEECTTSSCHHHHHHHHHHHHHHHHHT-TCC
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHHHHh-CcC
Confidence 89999987777 79999999999999999888 998
No 85
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A*
Probab=23.62 E-value=96 Score=22.52 Aligned_cols=37 Identities=16% Similarity=0.197 Sum_probs=30.1
Q ss_pred CeEEEecCCCCCHHHHHHHHHHHHHHHHhcCCchHHH
Q psy8772 64 PIIEIENCDNIDEDVERELKEYLLTQANENLGMVMIF 100 (234)
Q Consensus 64 P~i~l~~~~~L~~~~~~~L~~~L~~~~ee~lG~~mIf 100 (234)
|.|.+....++++.+...|.+.|.+...+.+|.|-=|
T Consensus 1 P~i~i~tn~~~s~~~~~~l~~~l~~ala~~lgkPe~~ 37 (125)
T 2wkb_A 1 PCCELITNISIPDDKAQNTLSEIEDAISNILGKPVAY 37 (125)
T ss_dssp CEEEEEESCCCCHHHHHHHHHHHHHHHHHHHCSCCTT
T ss_pred CEEEEEecCCCchhhHHHHHHHHHHHHHHHhCCCHHH
Confidence 7788877778899989999999988888877777543
No 86
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=23.55 E-value=58 Score=20.96 Aligned_cols=18 Identities=11% Similarity=0.401 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHhhcCCC
Q psy8772 4 QEEQSNEIEALDSIYYGD 21 (234)
Q Consensus 4 ~EeQ~~ElEaLeSIY~de 21 (234)
+.+..+.+..|++|||+-
T Consensus 9 ~~e~~~~~~~L~~MFP~l 26 (54)
T 1p3q_Q 9 ENERKDTLNTLQNMFPDM 26 (54)
T ss_dssp HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHHHcccC
Confidence 356778899999999974
No 87
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=23.47 E-value=99 Score=21.91 Aligned_cols=37 Identities=8% Similarity=0.157 Sum_probs=29.7
Q ss_pred CCCCeEEEecCCCCCHHHHHHHHHHHHHHHHhcCCch
Q psy8772 61 EEIPIIEIENCDNIDEDVERELKEYLLTQANENLGMV 97 (234)
Q Consensus 61 ~~~P~i~l~~~~~L~~~~~~~L~~~L~~~~ee~lG~~ 97 (234)
+-.+.++|....|.+.++...+.+.|.+...+.+|-+
T Consensus 55 ~~~~~v~i~~~~g~~~eqk~~l~~~i~~~l~~~lgi~ 91 (115)
T 1uiz_A 55 DPCAVCSLCSIGKIGGPQNKSYTKLLCDILTKQLNIP 91 (115)
T ss_dssp SSCEEEEEEESSCCSHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCeEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 3345677777778999999999999999998887754
No 88
>3t5s_A Gilaa.00834.A, macrophage migration inhibitory factor; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Giardia lamblia}
Probab=21.49 E-value=1.2e+02 Score=22.56 Aligned_cols=38 Identities=8% Similarity=0.076 Sum_probs=30.3
Q ss_pred CCCCeEEEecCCCCCHHHHHHHHHHHHHHHHhcCCchH
Q psy8772 61 EEIPIIEIENCDNIDEDVERELKEYLLTQANENLGMVM 98 (234)
Q Consensus 61 ~~~P~i~l~~~~~L~~~~~~~L~~~L~~~~ee~lG~~m 98 (234)
...|.+.+....+++..+...|...|.+...+.+|-|-
T Consensus 20 ~~MP~i~i~tnv~~~~~~~~~l~~~ls~~la~~lgKPe 57 (135)
T 3t5s_A 20 GSMPCAIVTTNADFTKDQADAFCLDMGQVLAKETGKPV 57 (135)
T ss_dssp -CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCSCG
T ss_pred CCcceEEEEecCccchhccchhHHHHHHHHHHhhCCch
Confidence 34799999888888888888899988888877777653
No 89
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A*
Probab=21.41 E-value=52 Score=24.02 Aligned_cols=38 Identities=11% Similarity=0.163 Sum_probs=26.4
Q ss_pred CCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHhcCCch
Q psy8772 60 PEEIPIIEIENCDNIDEDVERELKEYLLTQANENLGMV 97 (234)
Q Consensus 60 P~~~P~i~l~~~~~L~~~~~~~L~~~L~~~~ee~lG~~ 97 (234)
++-.|.+.|....|.+.++...|.+.|.+...+.+|.+
T Consensus 54 ~dp~~~v~I~~~~g~t~eqk~~l~~~i~~~l~~~lgi~ 91 (125)
T 2wkb_A 54 NEGYCFVRLTSIGGINRSNNSLLADKITKILSNHLSVK 91 (125)
T ss_dssp CSSCEEEEEECC-----CTHHHHHHHHHHHHHHHHCCC
T ss_pred CCCcEEEEEEECCCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 34457788887777899999999999999888887764
No 90
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=21.23 E-value=1.2e+02 Score=28.04 Aligned_cols=57 Identities=12% Similarity=0.193 Sum_probs=36.8
Q ss_pred CcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHh
Q psy8772 29 PHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENCDNIDEDVERELKEYLLTQANE 92 (234)
Q Consensus 29 p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~~~L~~~~~~~L~~~L~~~~ee 92 (234)
|..+.++|.|. ....+.+.|.-+.+||- =.+.+....+--..++..|+.....++++
T Consensus 85 Pq~v~l~LRpG-----~~~~f~v~~~~~~~ypv--DLy~LmDlS~SM~ddl~~lk~lg~~L~~~ 141 (472)
T 3t3p_B 85 PQRIALRLRPD-----DSKNFSIQVRQVEDYPV--DIYYLMDLSYSMKDDLWSIQNLGTKLATQ 141 (472)
T ss_dssp CCEEEEEECTT-----CEEEEEEEEECCSSCCE--EEEEEEECSGGGHHHHHHTTTHHHHHHHH
T ss_pred CcEEEEEecCC-----CcEEEEEEeecCCCCCc--eEEEEEccCcchHHHHHHHHHHHHHHHHH
Confidence 55778888763 45889999999999993 23444444443355666666666555544
No 91
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=20.99 E-value=46 Score=32.25 Aligned_cols=56 Identities=16% Similarity=0.166 Sum_probs=35.9
Q ss_pred CCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHHH
Q psy8772 28 DPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENCDNIDEDVERELKEYLLTQA 90 (234)
Q Consensus 28 ~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~~~L~~~~~~~L~~~L~~~~ 90 (234)
.|..++|+|.|. ....+.|.|+-+.+|| .=.+.|....+--..++..|+.....++
T Consensus 77 ~Pq~~~~~Lr~g-----~~~~f~~~~~~~~~yp--vDly~LmD~S~SM~ddi~~lk~l~~~l~ 132 (687)
T 3k6s_B 77 SPQKVTLYLRPG-----QAAAFNVTFRRAKGYP--IDLYYLMDLSYSMLDDLRNVKKLGGDLL 132 (687)
T ss_dssp BCSCBEEEECTT-----SCEEEEEEECCCCCCC--CEEEEEEECSSTTHHHHHTTTTCCTTHH
T ss_pred cCcEEEEEEecC-----CeeEEEEEEeccCCCc--eeEEEEEcCCcchHHHHHHHHHHHHHHH
Confidence 456788888773 3578999999999999 3344555544544555655554444333
No 92
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=20.47 E-value=1.6e+02 Score=20.68 Aligned_cols=35 Identities=20% Similarity=0.230 Sum_probs=28.8
Q ss_pred CeEEEecCCCCCHHHHHHHHHHHHHHHH-hcCCchHH
Q psy8772 64 PIIEIENCDNIDEDVERELKEYLLTQAN-ENLGMVMI 99 (234)
Q Consensus 64 P~i~l~~~~~L~~~~~~~L~~~L~~~~e-e~lG~~mI 99 (234)
|.+.+....++++. ...|.+.+.+... +.+|.|-=
T Consensus 1 P~i~i~tn~~~~~~-~~~l~~~~~~~l~~~~~gkPe~ 36 (112)
T 3b64_A 1 PVIQTFVSTPLDHH-KRENLAQVYRAVTRDVLGKPED 36 (112)
T ss_dssp CEEEEEESSCCCHH-HHHHHHHHHHHHHHHTSCSCGG
T ss_pred CEEEEEecCCCchh-HHHHHHHHHHHHHHHHhCCCHH
Confidence 77888777788888 8899999998888 88887744
Done!