RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8772
         (234 letters)



>d1ukxa_ d.20.1.3 (A:) EIF2-alpha kinase 4 (GCN2-like protein)
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 137

 Score = 92.0 bits (228), Expect = 2e-24
 Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 8/118 (6%)

Query: 2   DYQEEQSNEIEALDSIYYGDMEILEKD-------PHVFTIPIQSECVDDEHQMNCL-LRF 53
            Y + Q +E++AL++IY  D + L  D       P    + +  + +  E     + LR 
Sbjct: 10  SYSQRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLYPQGLAGEEVYVQVELRV 69

Query: 54  QYTPKYPEEIPIIEIENCDNIDEDVERELKEYLLTQANENLGMVMIFTLVSSAQEWLS 111
           +  P YP+ +P I+++N   +  +    LK +L   A +  G VMIF L    Q +LS
Sbjct: 70  KCPPTYPDVVPEIDLKNAKGLSNESVNLLKSHLEELAKKQCGEVMIFELAHHVQSFLS 127


>d2daya1 d.20.1.3 (A:8-122) E3 ubiquitin-protein ligase RNF25 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 115

 Score = 79.2 bits (195), Expect = 9e-20
 Identities = 26/110 (23%), Positives = 50/110 (45%), Gaps = 6/110 (5%)

Query: 7   QSNEIEALDSIYYGDMEILEKD----PHVFTIPIQSECVDDEHQMN--CLLRFQYTPKYP 60
             +E+E L+SIY  ++++++ +    P    I +     +D+        L  Q   +YP
Sbjct: 6   LPSEVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYP 65

Query: 61  EEIPIIEIENCDNIDEDVERELKEYLLTQANENLGMVMIFTLVSSAQEWL 110
            E+P I I N   + ++    + + L   A   LG  M++ L+   +E L
Sbjct: 66  HEVPQISIRNPRGLSDEQIHTILQVLGHVAKAGLGTAMLYELIEKGKEIL 115


>d2daxa1 d.20.1.3 (A:8-147) Uncharacterized protein C21orf6 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 140

 Score = 64.4 bits (156), Expect = 8e-14
 Identities = 23/132 (17%), Positives = 41/132 (31%), Gaps = 22/132 (16%)

Query: 2   DYQEEQSNEIEALDSIYYGDMEILEKDPHV---------------------FTIPIQSEC 40
           +  E Q  E++ L S++ G+ E++  D                        FTI +  + 
Sbjct: 1   EQAEAQLAELDLLASMFPGENELIVNDQLAVAELKDCIEKKTMEGRSSKVYFTINMNLDV 60

Query: 41  VDDEHQMNCLLRFQYTPKYPEEIPIIEIENCDNIDEDVERELKEYLLTQANENLGMVMIF 100
            D++      L      KYP  +P I + +         +   +          G V I 
Sbjct: 61  SDEKMA-MFSLACILPFKYPAVLPEITVRSVLLSRSQQTQLNTDLTAFLQKHCHGDVCIL 119

Query: 101 TLVSSAQEWLST 112
                 +E  S 
Sbjct: 120 NATEWVREHASG 131


>d2dawa1 d.20.1.3 (A:8-148) RWD domain-containing protein 2 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 141

 Score = 57.0 bits (137), Expect = 4e-11
 Identities = 16/127 (12%), Positives = 38/127 (29%), Gaps = 16/127 (12%)

Query: 2   DYQEEQSNEIEALDSIYYGDMEILEKDPHVFT----------------IPIQSECVDDEH 45
           +  + Q  E+E L S++    E+  +D +  T                I        +E 
Sbjct: 7   ESLQLQLLEMEMLFSMFPNQGEVKLEDVNALTNIKRYLEGTREALPPKIEFVITLQIEEP 66

Query: 46  QMNCLLRFQYTPKYPEEIPIIEIENCDNIDEDVERELKEYLLTQANENLGMVMIFTLVSS 105
           ++   L+      YP     +   + +          K         + G + +   +  
Sbjct: 67  KVKIDLQVTMPHSYPYLALQLFGRSSELDRHQQLLLNKGLTSYIGTFDPGELCVCAAIQW 126

Query: 106 AQEWLST 112
            Q+  ++
Sbjct: 127 LQDNSAS 133


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.130    0.359 

Gapped
Lambda     K      H
   0.267   0.0516    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 868,860
Number of extensions: 40934
Number of successful extensions: 133
Number of sequences better than 10.0: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 22
Length of query: 234
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 152
Effective length of database: 1,281,736
Effective search space: 194823872
Effective search space used: 194823872
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (23.9 bits)