BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8773
(1773 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FH7|A Chain A, Crystal Structure Of The Phosphatase Domains Of Human Ptp
Sigma
Length = 595
Score = 703 bits (1815), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/571 (61%), Positives = 421/571 (73%), Gaps = 39/571 (6%)
Query: 192 MVSHPPIPISRLAQHIENLKANDNLKFSQEYESIEPGQQFTWDHSSMEMNKAKNRYANVI 251
M+SHPPIPI+ +A+H E LKAND+LK SQEYESI+PGQQFTW+HS++E+NK KNRYANVI
Sbjct: 6 MLSHPPIPIADMAEHTERLKANDSLKLSQEYESIDPGQQFTWEHSNLEVNKPKNRYANVI 65
Query: 252 AYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVT 311
AYDHSRVIL ++GI GSDYINANY DGYR+ NAY+ATQGPL ET GDFWRMVWE RS T
Sbjct: 66 AYDHSRVILQPIEGIMGSDYINANYVDGYRRQNAYIATQGPLPETFGDFWRMVWEQRSAT 125
Query: 312 IVMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYCIRTFMINKGADSERRE 371
IVMMT+LEE++RIKCDQYWP+RGTETYG I VTL D ELA++C+RTF ++K SE+RE
Sbjct: 126 IVMMTRLEEKSRIKCDQYWPNRGTETYGFIQVTLLDTIELATFCVRTFSLHKNGSSEKRE 185
Query: 372 IKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGR 431
++Q QFTAWPDHGVPE+P PFL FLRRV+ NP GP++VHCSAGVGR
Sbjct: 186 VRQFQFTAWPDHGVPEYPTPFLAFLRRVKTCNPPD-----------AGPIVVHCSAGVGR 234
Query: 432 TGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLEAVLCGNTE 491
TGCFIVIDAM+ERIK +KTVD+YGHVT +R+QRNYMVQTEDQY FIH+ALLEAV CGNTE
Sbjct: 235 TGCFIVIDAMLERIKPEKTVDVYGHVTLMRSQRNYMVQTEDQYSFIHEALLEAVGCGNTE 294
Query: 492 IPARSLHVHIQKLMSMEVGDTSTGMELEFKKLSNIRAEPSRFISASLPCNKHKNRLVHIL 551
+PARSL+ +IQKL +E G+ TGMELEFK+L+N +A SRFISA+LPCNK KNRLV+I+
Sbjct: 295 VPARSLYAYIQKLAQVEPGEHVTGMELEFKRLANSKAHTSRFISANLPCNKFKNRLVNIM 354
Query: 552 PVESSRVCLTPVR---GDGFID--FIGQVHKTKEQFGQDGPIT-----------VHCSRL 595
P ES+RVCL P+R G +I+ FI + K GP+ + S +
Sbjct: 355 PYESTRVCLQPIRGVEGSDYINASFIDGYRQQKAYIATQGPLAETTEDFWRMLWENNSTI 414
Query: 596 AQHIENLKANDNLKFSQ----------EYESIEPGQQFTWDHSSM-EMNKAKNRYANVIA 644
+ L+ K Q +Y ++P ++ + E R
Sbjct: 415 VVMLTKLREMGREKCHQYWPAERSARYQYFVVDPMAEYNMPQYILREFKVTDARDGQSRT 474
Query: 645 YDHSRVILSTVDGIPGR-DGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSI 703
+ G+P +GFIDFIGQVHKTKEQFGQDGPI+VHCSAGVGRTGVFITLSI
Sbjct: 475 VRQFQFTDWPEQGVPKSGEGFIDFIGQVHKTKEQFGQDGPISVHCSAGVGRTGVFITLSI 534
Query: 704 VLERMQYEGVIDLFQTVRILRTQRPAMVQTE 734
VLERM+YEGV+D+FQTV++LRTQRPAMVQTE
Sbjct: 535 VLERMRYEGVVDIFQTVKMLRTQRPAMVQTE 565
Score = 438 bits (1127), Expect = e-122, Method: Compositional matrix adjust.
Identities = 199/274 (72%), Positives = 231/274 (84%), Gaps = 11/274 (4%)
Query: 734 ESIEPGQQFTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRK 793
ESI+PGQQFTW+HS++E+NK KNRYANVIAYDHSRVIL ++GI GSDYINANY DGYR+
Sbjct: 37 ESIDPGQQFTWEHSNLEVNKPKNRYANVIAYDHSRVILQPIEGIMGSDYINANYVDGYRR 96
Query: 794 HNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGHIT 853
NAY+ATQGPL ET GDFWRMVWE RS TIVMMT+LEE++RIKCDQYWP+RGTETYG I
Sbjct: 97 QNAYIATQGPLPETFGDFWRMVWEQRSATIVMMTRLEEKSRIKCDQYWPNRGTETYGFIQ 156
Query: 854 VTLQDVQELASYCIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAM 913
VTL D ELA++C+RTF ++K SE+RE++Q QFTAWPDHGVPE+P PFL FLRRV+
Sbjct: 157 VTLLDTIELATFCVRTFSLHKNGSSEKREVRQFQFTAWPDHGVPEYPTPFLAFLRRVKTC 216
Query: 914 NPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRA 973
NP GP++VHCSAGVGRTGCFIVIDAM+ERIK +KTVD+YGHVT +R+
Sbjct: 217 NPPD-----------AGPIVVHCSAGVGRTGCFIVIDAMLERIKPEKTVDVYGHVTLMRS 265
Query: 974 QRNYMVQTEDQYMFIHDALLEAVLCGNTEIPASS 1007
QRNYMVQTEDQY FIH+ALLEAV CGNTE+PA S
Sbjct: 266 QRNYMVQTEDQYSFIHEALLEAVGCGNTEVPARS 299
Score = 298 bits (763), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 154/275 (56%), Positives = 177/275 (64%), Gaps = 79/275 (28%)
Query: 1222 IAAKSLHVHIQKLMSMEVGDTSTGMELEFKKLSNIRAEPSRFISASLPCNKHKNRLVHIL 1281
+ A+SL+ +IQKL +E G+ TGMELE
Sbjct: 295 VPARSLYAYIQKLAQVEPGEHVTGMELE-------------------------------- 322
Query: 1282 PVESSRVCLTPVRGKTEFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLTP 1341
FK+L+N +A SRFISA+LPCNK KNRLV+I+P ES+RVCL P
Sbjct: 323 -----------------FKRLANSKAHTSRFISANLPCNKFKNRLVNIMPYESTRVCLQP 365
Query: 1342 VRGIEGSDYINASFIDGYRLRSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMG 1401
+RG+EGSDYINASFIDGYR + AYIATQGPLA+TTEDFWRMLWE+NSTIVVMLTKL+EMG
Sbjct: 366 IRGVEGSDYINASFIDGYRQQKAYIATQGPLAETTEDFWRMLWENNSTIVVMLTKLREMG 425
Query: 1402 R------------------------------YVLREFKVTDARDATSRTLRQFQLIDWPE 1431
R Y+LREFKVTDARD SRT+RQFQ DWPE
Sbjct: 426 REKCHQYWPAERSARYQYFVVDPMAEYNMPQYILREFKVTDARDGQSRTVRQFQFTDWPE 485
Query: 1432 QGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCS 1466
QGVPKSG+GFIDFIGQVHKTKEQFGQDGPI+VHCS
Sbjct: 486 QGVPKSGEGFIDFIGQVHKTKEQFGQDGPISVHCS 520
Score = 273 bits (699), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 127/165 (76%), Positives = 145/165 (87%), Gaps = 3/165 (1%)
Query: 1493 VLIAYLVLFSQEKCHQYWPSERSIRYEWFVVEPIAEYNMPQYVLREFKVTDARDATSRTL 1552
V++ L +EKCHQYWP+ERS RY++FVV+P+AEYNMPQY+LREFKVTDARD SRT+
Sbjct: 416 VMLTKLREMGREKCHQYWPAERSARYQYFVVDPMAEYNMPQYILREFKVTDARDGQSRTV 475
Query: 1553 RQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIV 1612
RQFQ DWPEQGVPKSG+GFIDFIGQVHKTKEQFGQDGPI+VHCSAGVGRTGVFITLSIV
Sbjct: 476 RQFQFTDWPEQGVPKSGEGFIDFIGQVHKTKEQFGQDGPISVHCSAGVGRTGVFITLSIV 535
Query: 1613 LERMQYEGVIDLFQTVRILRTQRPAMVQTEHLYTSSPFSEQLALD 1657
LERM+YEGV+D+FQTV++LRTQRPAMVQTE Y F Q AL+
Sbjct: 536 LERMRYEGVVDIFQTVKMLRTQRPAMVQTEDEYQ---FCYQAALE 577
Score = 271 bits (692), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 144/365 (39%), Positives = 200/365 (54%), Gaps = 61/365 (16%)
Query: 682 GPITVHCSAGVGRTGVFITLSIVLERMQYEGVIDLFQTVRILRTQRPAMVQTES------ 735
GPI VHCSAGVGRTG FI + +LER++ E +D++ V ++R+QR MVQTE
Sbjct: 222 GPIVVHCSAGVGRTGCFIVIDAMLERIKPEKTVDVYGHVTLMRSQRNYMVQTEDQYSFIH 281
Query: 736 ----------------------------IEPGQQFT------------------WDHSSM 749
+EPG+ T + +++
Sbjct: 282 EALLEAVGCGNTEVPARSLYAYIQKLAQVEPGEHVTGMELEFKRLANSKAHTSRFISANL 341
Query: 750 EMNKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLG 809
NK KNR N++ Y+ +RV L + G+ GSDYINA++ DGYR+ AY+ATQGPL ET
Sbjct: 342 PCNKFKNRLVNIMPYESTRVCLQPIRGVEGSDYINASFIDGYRQQKAYIATQGPLAETTE 401
Query: 810 DFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYCIRT 869
DFWRM+WE S +VM+TKL E R KC QYWP+ + Y + V + Y +R
Sbjct: 402 DFWRMLWENNSTIVVMLTKLREMGREKCHQYWPAERSARYQYFVVDPMAEYNMPQYILRE 461
Query: 870 FMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPV 929
F + D + R ++Q QFT WP+ GVP+ F+ F+ +V + E G +
Sbjct: 462 FKVTDARDGQSRTVRQFQFTDWPEQGVPKSGEGFIDFIGQVH------KTKEQFGQD--- 512
Query: 930 GPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIH 989
GP+ VHCSAGVGRTG FI + ++ER++++ VDI+ V LR QR MVQTED+Y F +
Sbjct: 513 GPISVHCSAGVGRTGVFITLSIVLERMRYEGVVDIFQTVKMLRTQRPAMVQTEDEYQFCY 572
Query: 990 DALLE 994
A LE
Sbjct: 573 QAALE 577
Score = 228 bits (581), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 110/248 (44%), Positives = 153/248 (61%), Gaps = 9/248 (3%)
Query: 236 SSMEMNKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQE 295
+++ NK KNR N++ Y+ +RV L + G+ GSDYINA++ DGYR+ AY+ATQGPL E
Sbjct: 339 ANLPCNKFKNRLVNIMPYESTRVCLQPIRGVEGSDYINASFIDGYRQQKAYIATQGPLAE 398
Query: 296 TLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYC 355
T DFWRM+WE S +VM+TKL E R KC QYWP+ + Y + V + Y
Sbjct: 399 TTEDFWRMLWENNSTIVVMLTKLREMGREKCHQYWPAERSARYQYFVVDPMAEYNMPQYI 458
Query: 356 IRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVN 415
+R F + D + R ++Q QFT WP+ GVP+ F+ F+ +V + E G +
Sbjct: 459 LREFKVTDARDGQSRTVRQFQFTDWPEQGVPKSGEGFIDFIGQVH------KTKEQFGQD 512
Query: 416 LPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYM 475
GP+ VHCSAGVGRTG FI + ++ER++++ VDI+ V LR QR MVQTED+Y
Sbjct: 513 ---GPISVHCSAGVGRTGVFITLSIVLERMRYEGVVDIFQTVKMLRTQRPAMVQTEDEYQ 569
Query: 476 FIHDALLE 483
F + A LE
Sbjct: 570 FCYQAALE 577
Score = 135 bits (339), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 70/182 (38%), Positives = 98/182 (53%), Gaps = 32/182 (17%)
Query: 1315 ASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFIDGYRLRSAYIATQGPLAD 1374
++L NK KNR +++ + SRV L P+ GI GSDYINA+++DGYR ++AYIATQGPL +
Sbjct: 50 SNLEVNKPKNRYANVIAYDHSRVILQPIEGIMGSDYINANYVDGYRRQNAYIATQGPLPE 109
Query: 1375 TTEDFWRMLWEHNSTIVVMLTKLKEMGR------------------------------YV 1404
T DFWRM+WE S +VM+T+L+E R +
Sbjct: 110 TFGDFWRMVWEQRSATIVMMTRLEEKSRIKCDQYWPNRGTETYGFIQVTLLDTIELATFC 169
Query: 1405 LREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVH 1464
+R F + + R +RQFQ WP+ GVP+ F+ F+ +V GPI VH
Sbjct: 170 VRTFSLHKNGSSEKREVRQFQFTAWPDHGVPEYPTPFLAFLRRVKTCNPP--DAGPIVVH 227
Query: 1465 CS 1466
CS
Sbjct: 228 CS 229
Score = 108 bits (271), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 88/160 (55%), Gaps = 2/160 (1%)
Query: 1487 QLSFCSVLIAYLVLFSQEKCHQYWPSERSIRYEWFVVEPIAEYNMPQYVLREFKVTDARD 1546
Q S V++ L S+ KC QYWP+ + Y + V + + + +R F +
Sbjct: 121 QRSATIVMMTRLEEKSRIKCDQYWPNRGTETYGFIQVTLLDTIELATFCVRTFSLHKNGS 180
Query: 1547 ATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVF 1606
+ R +RQFQ WP+ GVP+ F+ F+ +V GPI VHCSAGVGRTG F
Sbjct: 181 SEKREVRQFQFTAWPDHGVPEYPTPFLAFLRRVKTCNPP--DAGPIVVHCSAGVGRTGCF 238
Query: 1607 ITLSIVLERMQYEGVIDLFQTVRILRTQRPAMVQTEHLYT 1646
I + +LER++ E +D++ V ++R+QR MVQTE Y+
Sbjct: 239 IVIDAMLERIKPEKTVDVYGHVTLMRSQRNYMVQTEDQYS 278
Score = 63.9 bits (154), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 38/74 (51%), Gaps = 30/74 (40%)
Query: 1729 GPLIVHCSAGVGRTGCFI------------------------------VIDAKEQYQFCY 1758
GP+ VHCSAGVGRTG FI ++ +++YQFCY
Sbjct: 513 GPISVHCSAGVGRTGVFITLSIVLERMRYEGVVDIFQTVKMLRTQRPAMVQTEDEYQFCY 572
Query: 1759 HAALEYLGSFDHYT 1772
AALEYLGSFDHY
Sbjct: 573 QAALEYLGSFDHYA 586
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/23 (86%), Positives = 22/23 (95%)
Query: 1728 VGPLIVHCSAGVGRTGCFIVIDA 1750
GP++VHCSAGVGRTGCFIVIDA
Sbjct: 221 AGPIVVHCSAGVGRTGCFIVIDA 243
>pdb|3SR9|A Chain A, Crystal Structure Of Mouse Ptpsigma
Length = 583
Score = 702 bits (1811), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/579 (61%), Positives = 424/579 (73%), Gaps = 55/579 (9%)
Query: 192 MVSHPPIPISRLAQHIENLKANDNLKFSQEYESIEPGQQFTWDHSSMEMNKAKNRYANVI 251
M+SHPPIPI+ +A+H+E LKAND+LK SQEYESI+PGQQFTW+HS++E NK KNRYANVI
Sbjct: 8 MLSHPPIPITDMAEHMERLKANDSLKLSQEYESIDPGQQFTWEHSNLEANKPKNRYANVI 67
Query: 252 AYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVT 311
AYDHSRVIL ++GI GSDYINANY DGYR+ NAY+ATQGPL ET GDFWRMVWE RS T
Sbjct: 68 AYDHSRVILQPLEGIMGSDYINANYVDGYRRQNAYIATQGPLPETFGDFWRMVWEQRSAT 127
Query: 312 IVMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYCIRTFMINKGADSERRE 371
+VMMT+LEE++RIKCDQYWP+RGTETYG I VTL D ELA++C+RTF ++K SE+RE
Sbjct: 128 VVMMTRLEEKSRIKCDQYWPNRGTETYGFIQVTLLDTMELATFCVRTFSLHKNGSSEKRE 187
Query: 372 IKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGR 431
++ QFTAWPDHGVPE+P PFL FLRRV+ NP GP++VHCSAGVGR
Sbjct: 188 VRHFQFTAWPDHGVPEYPTPFLAFLRRVKTCNPPD-----------AGPIVVHCSAGVGR 236
Query: 432 TGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLEAVLCGNTE 491
TGCFIVIDAM+ERIK +KTVD+YGHVT +R+QRNYMVQTEDQY FIH+ALLEAV CGNTE
Sbjct: 237 TGCFIVIDAMLERIKTEKTVDVYGHVTLMRSQRNYMVQTEDQYGFIHEALLEAVGCGNTE 296
Query: 492 IPARSLHVHIQKLMSMEVGDTSTGMELEFKKLSNIRAEPSRFISASLPCNKHKNRLVHIL 551
+PARSL+ +IQKL +E G+ TGMELEFK+L++ +A SRFI+ASLPCNK KNRLV+IL
Sbjct: 297 VPARSLYTYIQKLAQVEPGEHVTGMELEFKRLASSKAHTSRFITASLPCNKFKNRLVNIL 356
Query: 552 PVESSRVCLTPVR---GDGFID--FIGQVHKTKEQFGQDGPITVHCSRLAQHIEN----L 602
P ESSRVCL P+R G +I+ FI + K GP LA+ E+ L
Sbjct: 357 PYESSRVCLQPIRGVEGSDYINASFIDGYRQQKAYIATQGP-------LAETTEDFWRAL 409
Query: 603 KANDNLKFSQEYESIEPGQQFTWDHSSMEMNKAKNRYANV---IAYDHSRVILSTVDGIP 659
N++ + E G++ + E A+ +Y V Y+ + IL
Sbjct: 410 WENNSTIVVMLTKLREMGREKCHQYWPAE-RSARYQYFVVDPMAEYNMPQYILREFKVTD 468
Query: 660 GRD------------------------GFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRT 695
RD GFIDFIGQVHKTKEQFGQDGPI+VHCSAGVGRT
Sbjct: 469 ARDGQSRTVRQFQFTDWPEQGAPKSGEGFIDFIGQVHKTKEQFGQDGPISVHCSAGVGRT 528
Query: 696 GVFITLSIVLERMQYEGVIDLFQTVRILRTQRPAMVQTE 734
GVFITLSIVLERM+YEGV+D+FQTV++LRTQRPAMVQTE
Sbjct: 529 GVFITLSIVLERMRYEGVVDIFQTVKVLRTQRPAMVQTE 567
Score = 436 bits (1122), Expect = e-122, Method: Compositional matrix adjust.
Identities = 197/274 (71%), Positives = 229/274 (83%), Gaps = 11/274 (4%)
Query: 734 ESIEPGQQFTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRK 793
ESI+PGQQFTW+HS++E NK KNRYANVIAYDHSRVIL ++GI GSDYINANY DGYR+
Sbjct: 39 ESIDPGQQFTWEHSNLEANKPKNRYANVIAYDHSRVILQPLEGIMGSDYINANYVDGYRR 98
Query: 794 HNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGHIT 853
NAY+ATQGPL ET GDFWRMVWE RS T+VMMT+LEE++RIKCDQYWP+RGTETYG I
Sbjct: 99 QNAYIATQGPLPETFGDFWRMVWEQRSATVVMMTRLEEKSRIKCDQYWPNRGTETYGFIQ 158
Query: 854 VTLQDVQELASYCIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAM 913
VTL D ELA++C+RTF ++K SE+RE++ QFTAWPDHGVPE+P PFL FLRRV+
Sbjct: 159 VTLLDTMELATFCVRTFSLHKNGSSEKREVRHFQFTAWPDHGVPEYPTPFLAFLRRVKTC 218
Query: 914 NPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRA 973
NP GP++VHCSAGVGRTGCFIVIDAM+ERIK +KTVD+YGHVT +R+
Sbjct: 219 NPPD-----------AGPIVVHCSAGVGRTGCFIVIDAMLERIKTEKTVDVYGHVTLMRS 267
Query: 974 QRNYMVQTEDQYMFIHDALLEAVLCGNTEIPASS 1007
QRNYMVQTEDQY FIH+ALLEAV CGNTE+PA S
Sbjct: 268 QRNYMVQTEDQYGFIHEALLEAVGCGNTEVPARS 301
Score = 294 bits (753), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 153/275 (55%), Positives = 175/275 (63%), Gaps = 79/275 (28%)
Query: 1222 IAAKSLHVHIQKLMSMEVGDTSTGMELEFKKLSNIRAEPSRFISASLPCNKHKNRLVHIL 1281
+ A+SL+ +IQKL +E G+ TGMELE
Sbjct: 297 VPARSLYTYIQKLAQVEPGEHVTGMELE-------------------------------- 324
Query: 1282 PVESSRVCLTPVRGKTEFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLTP 1341
FK+L++ +A SRFI+ASLPCNK KNRLV+ILP ESSRVCL P
Sbjct: 325 -----------------FKRLASSKAHTSRFITASLPCNKFKNRLVNILPYESSRVCLQP 367
Query: 1342 VRGIEGSDYINASFIDGYRLRSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMG 1401
+RG+EGSDYINASFIDGYR + AYIATQGPLA+TTEDFWR LWE+NSTIVVMLTKL+EMG
Sbjct: 368 IRGVEGSDYINASFIDGYRQQKAYIATQGPLAETTEDFWRALWENNSTIVVMLTKLREMG 427
Query: 1402 R------------------------------YVLREFKVTDARDATSRTLRQFQLIDWPE 1431
R Y+LREFKVTDARD SRT+RQFQ DWPE
Sbjct: 428 REKCHQYWPAERSARYQYFVVDPMAEYNMPQYILREFKVTDARDGQSRTVRQFQFTDWPE 487
Query: 1432 QGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCS 1466
QG PKSG+GFIDFIGQVHKTKEQFGQDGPI+VHCS
Sbjct: 488 QGAPKSGEGFIDFIGQVHKTKEQFGQDGPISVHCS 522
Score = 272 bits (696), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 126/165 (76%), Positives = 144/165 (87%), Gaps = 3/165 (1%)
Query: 1493 VLIAYLVLFSQEKCHQYWPSERSIRYEWFVVEPIAEYNMPQYVLREFKVTDARDATSRTL 1552
V++ L +EKCHQYWP+ERS RY++FVV+P+AEYNMPQY+LREFKVTDARD SRT+
Sbjct: 418 VMLTKLREMGREKCHQYWPAERSARYQYFVVDPMAEYNMPQYILREFKVTDARDGQSRTV 477
Query: 1553 RQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIV 1612
RQFQ DWPEQG PKSG+GFIDFIGQVHKTKEQFGQDGPI+VHCSAGVGRTGVFITLSIV
Sbjct: 478 RQFQFTDWPEQGAPKSGEGFIDFIGQVHKTKEQFGQDGPISVHCSAGVGRTGVFITLSIV 537
Query: 1613 LERMQYEGVIDLFQTVRILRTQRPAMVQTEHLYTSSPFSEQLALD 1657
LERM+YEGV+D+FQTV++LRTQRPAMVQTE Y F Q AL+
Sbjct: 538 LERMRYEGVVDIFQTVKVLRTQRPAMVQTEDEYQ---FCFQAALE 579
Score = 269 bits (688), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 144/365 (39%), Positives = 197/365 (53%), Gaps = 61/365 (16%)
Query: 682 GPITVHCSAGVGRTGVFITLSIVLERMQYEGVIDLFQTVRILRTQRPAMVQTES------ 735
GPI VHCSAGVGRTG FI + +LER++ E +D++ V ++R+QR MVQTE
Sbjct: 224 GPIVVHCSAGVGRTGCFIVIDAMLERIKTEKTVDVYGHVTLMRSQRNYMVQTEDQYGFIH 283
Query: 736 ----------------------------IEPGQQFT------------------WDHSSM 749
+EPG+ T + +S+
Sbjct: 284 EALLEAVGCGNTEVPARSLYTYIQKLAQVEPGEHVTGMELEFKRLASSKAHTSRFITASL 343
Query: 750 EMNKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLG 809
NK KNR N++ Y+ SRV L + G+ GSDYINA++ DGYR+ AY+ATQGPL ET
Sbjct: 344 PCNKFKNRLVNILPYESSRVCLQPIRGVEGSDYINASFIDGYRQQKAYIATQGPLAETTE 403
Query: 810 DFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYCIRT 869
DFWR +WE S +VM+TKL E R KC QYWP+ + Y + V + Y +R
Sbjct: 404 DFWRALWENNSTIVVMLTKLREMGREKCHQYWPAERSARYQYFVVDPMAEYNMPQYILRE 463
Query: 870 FMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPV 929
F + D + R ++Q QFT WP+ G P+ F+ F+ +V + E G +
Sbjct: 464 FKVTDARDGQSRTVRQFQFTDWPEQGAPKSGEGFIDFIGQVH------KTKEQFGQD--- 514
Query: 930 GPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIH 989
GP+ VHCSAGVGRTG FI + ++ER++++ VDI+ V LR QR MVQTED+Y F
Sbjct: 515 GPISVHCSAGVGRTGVFITLSIVLERMRYEGVVDIFQTVKVLRTQRPAMVQTEDEYQFCF 574
Query: 990 DALLE 994
A LE
Sbjct: 575 QAALE 579
Score = 226 bits (575), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 110/248 (44%), Positives = 150/248 (60%), Gaps = 9/248 (3%)
Query: 236 SSMEMNKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQE 295
+S+ NK KNR N++ Y+ SRV L + G+ GSDYINA++ DGYR+ AY+ATQGPL E
Sbjct: 341 ASLPCNKFKNRLVNILPYESSRVCLQPIRGVEGSDYINASFIDGYRQQKAYIATQGPLAE 400
Query: 296 TLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYC 355
T DFWR +WE S +VM+TKL E R KC QYWP+ + Y + V + Y
Sbjct: 401 TTEDFWRALWENNSTIVVMLTKLREMGREKCHQYWPAERSARYQYFVVDPMAEYNMPQYI 460
Query: 356 IRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVN 415
+R F + D + R ++Q QFT WP+ G P+ F+ F+ +V + E G +
Sbjct: 461 LREFKVTDARDGQSRTVRQFQFTDWPEQGAPKSGEGFIDFIGQVH------KTKEQFGQD 514
Query: 416 LPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYM 475
GP+ VHCSAGVGRTG FI + ++ER++++ VDI+ V LR QR MVQTED+Y
Sbjct: 515 ---GPISVHCSAGVGRTGVFITLSIVLERMRYEGVVDIFQTVKVLRTQRPAMVQTEDEYQ 571
Query: 476 FIHDALLE 483
F A LE
Sbjct: 572 FCFQAALE 579
Score = 133 bits (334), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 70/182 (38%), Positives = 97/182 (53%), Gaps = 32/182 (17%)
Query: 1315 ASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFIDGYRLRSAYIATQGPLAD 1374
++L NK KNR +++ + SRV L P+ GI GSDYINA+++DGYR ++AYIATQGPL +
Sbjct: 52 SNLEANKPKNRYANVIAYDHSRVILQPLEGIMGSDYINANYVDGYRRQNAYIATQGPLPE 111
Query: 1375 TTEDFWRMLWEHNSTIVVMLTKLKEMGR------------------------------YV 1404
T DFWRM+WE S VVM+T+L+E R +
Sbjct: 112 TFGDFWRMVWEQRSATVVMMTRLEEKSRIKCDQYWPNRGTETYGFIQVTLLDTMELATFC 171
Query: 1405 LREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVH 1464
+R F + + R +R FQ WP+ GVP+ F+ F+ +V GPI VH
Sbjct: 172 VRTFSLHKNGSSEKREVRHFQFTAWPDHGVPEYPTPFLAFLRRVKTCNPP--DAGPIVVH 229
Query: 1465 CS 1466
CS
Sbjct: 230 CS 231
Score = 107 bits (268), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 58/159 (36%), Positives = 86/159 (54%), Gaps = 2/159 (1%)
Query: 1487 QLSFCSVLIAYLVLFSQEKCHQYWPSERSIRYEWFVVEPIAEYNMPQYVLREFKVTDARD 1546
Q S V++ L S+ KC QYWP+ + Y + V + + + +R F +
Sbjct: 123 QRSATVVMMTRLEEKSRIKCDQYWPNRGTETYGFIQVTLLDTMELATFCVRTFSLHKNGS 182
Query: 1547 ATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVF 1606
+ R +R FQ WP+ GVP+ F+ F+ +V GPI VHCSAGVGRTG F
Sbjct: 183 SEKREVRHFQFTAWPDHGVPEYPTPFLAFLRRVKTCNPP--DAGPIVVHCSAGVGRTGCF 240
Query: 1607 ITLSIVLERMQYEGVIDLFQTVRILRTQRPAMVQTEHLY 1645
I + +LER++ E +D++ V ++R+QR MVQTE Y
Sbjct: 241 IVIDAMLERIKTEKTVDVYGHVTLMRSQRNYMVQTEDQY 279
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 30/69 (43%)
Query: 1729 GPLIVHCSAGVGRTGCFI------------------------------VIDAKEQYQFCY 1758
GP+ VHCSAGVGRTG FI ++ +++YQFC+
Sbjct: 515 GPISVHCSAGVGRTGVFITLSIVLERMRYEGVVDIFQTVKVLRTQRPAMVQTEDEYQFCF 574
Query: 1759 HAALEYLGS 1767
AALEYLGS
Sbjct: 575 QAALEYLGS 583
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/23 (86%), Positives = 22/23 (95%)
Query: 1728 VGPLIVHCSAGVGRTGCFIVIDA 1750
GP++VHCSAGVGRTGCFIVIDA
Sbjct: 223 AGPIVVHCSAGVGRTGCFIVIDA 245
>pdb|1LAR|A Chain A, Crystal Structure Of The Tandem Phosphatase Domains Of
Rptp Lar
pdb|1LAR|B Chain B, Crystal Structure Of The Tandem Phosphatase Domains Of
Rptp Lar
Length = 575
Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/569 (60%), Positives = 418/569 (73%), Gaps = 51/569 (8%)
Query: 200 ISRLAQHIENLKANDNLKFSQEYESIEPGQQFTWDHSSMEMNKAKNRYANVIAYDHSRVI 259
I+ LA +IE LKAND LKFSQEYESI+PGQQFTW++S++E+NK KNRYANVIAYDHSRVI
Sbjct: 2 ITDLADNIERLKANDGLKFSQEYESIDPGQQFTWENSNLEVNKPKNRYANVIAYDHSRVI 61
Query: 260 LSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLE 319
L+++DG+PGSDYINANY DGYRK NAY+ATQGPL ET+GDFWRMVWE R+ T+VMMT+LE
Sbjct: 62 LTSIDGVPGSDYINANYIDGYRKQNAYIATQGPLPETMGDFWRMVWEQRTATVVMMTRLE 121
Query: 320 ERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYCIRTFMINKGADSERREIKQLQFTA 379
E++R+KCDQYWP+RGTET G I VTL D ELA+Y +RTF ++K SE+RE++Q QF A
Sbjct: 122 EKSRVKCDQYWPARGTETCGLIQVTLLDTVELATYTVRTFALHKSGSSEKRELRQFQFMA 181
Query: 380 WPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVID 439
WPDHGVPE+P P L FLRRV+A NP L GP++VHCSAGVGRTGCFIVID
Sbjct: 182 WPDHGVPEYPTPILAFLRRVKACNP-----------LDAGPMVVHCSAGVGRTGCFIVID 230
Query: 440 AMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLEAVLCGNTEIPARSLHV 499
AM+ER+KH+KTVDIYGHVTC+R+QRNYMVQTEDQY+FIH+ALLEA CG+TE+PAR+L+
Sbjct: 231 AMLERMKHEKTVDIYGHVTCMRSQRNYMVQTEDQYVFIHEALLEAATCGHTEVPARNLYA 290
Query: 500 HIQKLMSMEVGDTSTGMELEFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSRVC 559
HIQKL + G++ T MELEFK L++ +A SRFISA+LPCNK KNRLV+I+P E +RVC
Sbjct: 291 HIQKLGQVPPGESVTAMELEFKLLASSKAHTSRFISANLPCNKFKNRLVNIMPYELTRVC 350
Query: 560 LTPVR---GDGFID--FIGQVHKTKEQFGQDGPIT-----------VHCSRLAQHIENLK 603
L P+R G +I+ F+ + K GP+ H S + + L+
Sbjct: 351 LQPIRGVEGSDYINASFLDGYRQQKAYIATQGPLAESTEDFWRMLWEHNSTIIVMLTKLR 410
Query: 604 ANDNLKFSQ----------EYESIEPGQQFTWDHSSMEMNKAKNRYANVIAYD-HSRVI- 651
K Q +Y ++P ++ + K + A D SR I
Sbjct: 411 EMGREKCHQYWPAERSARYQYFVVDPMAEYNMPQYILREFKVTD------ARDGQSRTIR 464
Query: 652 -LSTVD----GIPGR-DGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVL 705
D G+P +GFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVL
Sbjct: 465 QFQFTDWPEQGVPKTGEGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVL 524
Query: 706 ERMQYEGVIDLFQTVRILRTQRPAMVQTE 734
ERM+YEGV+D+FQTV+ LRTQRPAMVQTE
Sbjct: 525 ERMRYEGVVDMFQTVKTLRTQRPAMVQTE 553
Score = 440 bits (1132), Expect = e-123, Method: Compositional matrix adjust.
Identities = 195/274 (71%), Positives = 235/274 (85%), Gaps = 11/274 (4%)
Query: 734 ESIEPGQQFTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRK 793
ESI+PGQQFTW++S++E+NK KNRYANVIAYDHSRVIL+++DG+PGSDYINANY DGYRK
Sbjct: 25 ESIDPGQQFTWENSNLEVNKPKNRYANVIAYDHSRVILTSIDGVPGSDYINANYIDGYRK 84
Query: 794 HNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGHIT 853
NAY+ATQGPL ET+GDFWRMVWE R+ T+VMMT+LEE++R+KCDQYWP+RGTET G I
Sbjct: 85 QNAYIATQGPLPETMGDFWRMVWEQRTATVVMMTRLEEKSRVKCDQYWPARGTETCGLIQ 144
Query: 854 VTLQDVQELASYCIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAM 913
VTL D ELA+Y +RTF ++K SE+RE++Q QF AWPDHGVPE+P P L FLRRV+A
Sbjct: 145 VTLLDTVELATYTVRTFALHKSGSSEKRELRQFQFMAWPDHGVPEYPTPILAFLRRVKAC 204
Query: 914 NPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRA 973
NP L GP++VHCSAGVGRTGCFIVIDAM+ER+KH+KTVDIYGHVTC+R+
Sbjct: 205 NP-----------LDAGPMVVHCSAGVGRTGCFIVIDAMLERMKHEKTVDIYGHVTCMRS 253
Query: 974 QRNYMVQTEDQYMFIHDALLEAVLCGNTEIPASS 1007
QRNYMVQTEDQY+FIH+ALLEA CG+TE+PA +
Sbjct: 254 QRNYMVQTEDQYVFIHEALLEAATCGHTEVPARN 287
Score = 290 bits (741), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 148/275 (53%), Positives = 174/275 (63%), Gaps = 79/275 (28%)
Query: 1222 IAAKSLHVHIQKLMSMEVGDTSTGMELEFKKLSNIRAEPSRFISASLPCNKHKNRLVHIL 1281
+ A++L+ HIQKL + G++ T MELE
Sbjct: 283 VPARNLYAHIQKLGQVPPGESVTAMELE-------------------------------- 310
Query: 1282 PVESSRVCLTPVRGKTEFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLTP 1341
FK L++ +A SRFISA+LPCNK KNRLV+I+P E +RVCL P
Sbjct: 311 -----------------FKLLASSKAHTSRFISANLPCNKFKNRLVNIMPYELTRVCLQP 353
Query: 1342 VRGIEGSDYINASFIDGYRLRSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMG 1401
+RG+EGSDYINASF+DGYR + AYIATQGPLA++TEDFWRMLWEHNSTI+VMLTKL+EMG
Sbjct: 354 IRGVEGSDYINASFLDGYRQQKAYIATQGPLAESTEDFWRMLWEHNSTIIVMLTKLREMG 413
Query: 1402 R------------------------------YVLREFKVTDARDATSRTLRQFQLIDWPE 1431
R Y+LREFKVTDARD SRT+RQFQ DWPE
Sbjct: 414 REKCHQYWPAERSARYQYFVVDPMAEYNMPQYILREFKVTDARDGQSRTIRQFQFTDWPE 473
Query: 1432 QGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCS 1466
QGVPK+G+GFIDFIGQVHKTKEQFGQDGPITVHCS
Sbjct: 474 QGVPKTGEGFIDFIGQVHKTKEQFGQDGPITVHCS 508
Score = 273 bits (698), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 123/153 (80%), Positives = 139/153 (90%)
Query: 1493 VLIAYLVLFSQEKCHQYWPSERSIRYEWFVVEPIAEYNMPQYVLREFKVTDARDATSRTL 1552
V++ L +EKCHQYWP+ERS RY++FVV+P+AEYNMPQY+LREFKVTDARD SRT+
Sbjct: 404 VMLTKLREMGREKCHQYWPAERSARYQYFVVDPMAEYNMPQYILREFKVTDARDGQSRTI 463
Query: 1553 RQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIV 1612
RQFQ DWPEQGVPK+G+GFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIV
Sbjct: 464 RQFQFTDWPEQGVPKTGEGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIV 523
Query: 1613 LERMQYEGVIDLFQTVRILRTQRPAMVQTEHLY 1645
LERM+YEGV+D+FQTV+ LRTQRPAMVQTE Y
Sbjct: 524 LERMRYEGVVDMFQTVKTLRTQRPAMVQTEDQY 556
Score = 267 bits (682), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 143/365 (39%), Positives = 198/365 (54%), Gaps = 61/365 (16%)
Query: 682 GPITVHCSAGVGRTGVFITLSIVLERMQYEGVIDLFQTVRILRTQRPAMVQTES------ 735
GP+ VHCSAGVGRTG FI + +LERM++E +D++ V +R+QR MVQTE
Sbjct: 210 GPMVVHCSAGVGRTGCFIVIDAMLERMKHEKTVDIYGHVTCMRSQRNYMVQTEDQYVFIH 269
Query: 736 ----------------------------IEPGQQFT------------------WDHSSM 749
+ PG+ T + +++
Sbjct: 270 EALLEAATCGHTEVPARNLYAHIQKLGQVPPGESVTAMELEFKLLASSKAHTSRFISANL 329
Query: 750 EMNKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLG 809
NK KNR N++ Y+ +RV L + G+ GSDYINA++ DGYR+ AY+ATQGPL E+
Sbjct: 330 PCNKFKNRLVNIMPYELTRVCLQPIRGVEGSDYINASFLDGYRQQKAYIATQGPLAESTE 389
Query: 810 DFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYCIRT 869
DFWRM+WE S IVM+TKL E R KC QYWP+ + Y + V + Y +R
Sbjct: 390 DFWRMLWEHNSTIIVMLTKLREMGREKCHQYWPAERSARYQYFVVDPMAEYNMPQYILRE 449
Query: 870 FMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPV 929
F + D + R I+Q QFT WP+ GVP+ F+ F+ +V + E G +
Sbjct: 450 FKVTDARDGQSRTIRQFQFTDWPEQGVPKTGEGFIDFIGQVH------KTKEQFGQD--- 500
Query: 930 GPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIH 989
GP+ VHCSAGVGRTG FI + ++ER++++ VD++ V LR QR MVQTEDQY +
Sbjct: 501 GPITVHCSAGVGRTGVFITLSIVLERMRYEGVVDMFQTVKTLRTQRPAMVQTEDQYQLCY 560
Query: 990 DALLE 994
A LE
Sbjct: 561 RAALE 565
Score = 226 bits (576), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 118/296 (39%), Positives = 167/296 (56%), Gaps = 15/296 (5%)
Query: 194 SHPPIPISRLAQHIENLK----ANDNLKFSQEYESIEPGQQFT--WDHSSMEMNKAKNRY 247
H +P L HI+ L E++ + + T + +++ NK KNR
Sbjct: 279 GHTEVPARNLYAHIQKLGQVPPGESVTAMELEFKLLASSKAHTSRFISANLPCNKFKNRL 338
Query: 248 ANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDFWRMVWEL 307
N++ Y+ +RV L + G+ GSDYINA++ DGYR+ AY+ATQGPL E+ DFWRM+WE
Sbjct: 339 VNIMPYELTRVCLQPIRGVEGSDYINASFLDGYRQQKAYIATQGPLAESTEDFWRMLWEH 398
Query: 308 RSVTIVMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYCIRTFMINKGADS 367
S IVM+TKL E R KC QYWP+ + Y + V + Y +R F + D
Sbjct: 399 NSTIIVMLTKLREMGREKCHQYWPAERSARYQYFVVDPMAEYNMPQYILREFKVTDARDG 458
Query: 368 ERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSA 427
+ R I+Q QFT WP+ GVP+ F+ F+ +V + E G + GP+ VHCSA
Sbjct: 459 QSRTIRQFQFTDWPEQGVPKTGEGFIDFIGQVH------KTKEQFGQD---GPITVHCSA 509
Query: 428 GVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLE 483
GVGRTG FI + ++ER++++ VD++ V LR QR MVQTEDQY + A LE
Sbjct: 510 GVGRTGVFITLSIVLERMRYEGVVDMFQTVKTLRTQRPAMVQTEDQYQLCYRAALE 565
Score = 134 bits (337), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 70/183 (38%), Positives = 100/183 (54%), Gaps = 32/183 (17%)
Query: 1314 SASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFIDGYRLRSAYIATQGPLA 1373
+++L NK KNR +++ + SRV LT + G+ GSDYINA++IDGYR ++AYIATQGPL
Sbjct: 37 NSNLEVNKPKNRYANVIAYDHSRVILTSIDGVPGSDYINANYIDGYRKQNAYIATQGPLP 96
Query: 1374 DTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------------------------Y 1403
+T DFWRM+WE + VVM+T+L+E R Y
Sbjct: 97 ETMGDFWRMVWEQRTATVVMMTRLEEKSRVKCDQYWPARGTETCGLIQVTLLDTVELATY 156
Query: 1404 VLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITV 1463
+R F + + + R LRQFQ + WP+ GVP+ + F+ +V GP+ V
Sbjct: 157 TVRTFALHKSGSSEKRELRQFQFMAWPDHGVPEYPTPILAFLRRVKACNPL--DAGPMVV 214
Query: 1464 HCS 1466
HCS
Sbjct: 215 HCS 217
Score = 107 bits (268), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 84/153 (54%), Gaps = 2/153 (1%)
Query: 1493 VLIAYLVLFSQEKCHQYWPSERSIRYEWFVVEPIAEYNMPQYVLREFKVTDARDATSRTL 1552
V++ L S+ KC QYWP+ + V + + Y +R F + + + R L
Sbjct: 115 VMMTRLEEKSRVKCDQYWPARGTETCGLIQVTLLDTVELATYTVRTFALHKSGSSEKREL 174
Query: 1553 RQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIV 1612
RQFQ + WP+ GVP+ + F+ +V GP+ VHCSAGVGRTG FI + +
Sbjct: 175 RQFQFMAWPDHGVPEYPTPILAFLRRVKACNPL--DAGPMVVHCSAGVGRTGCFIVIDAM 232
Query: 1613 LERMQYEGVIDLFQTVRILRTQRPAMVQTEHLY 1645
LERM++E +D++ V +R+QR MVQTE Y
Sbjct: 233 LERMKHEKTVDIYGHVTCMRSQRNYMVQTEDQY 265
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 37/73 (50%), Gaps = 30/73 (41%)
Query: 1729 GPLIVHCSAGVGRTGCFI------------------------------VIDAKEQYQFCY 1758
GP+ VHCSAGVGRTG FI ++ ++QYQ CY
Sbjct: 501 GPITVHCSAGVGRTGVFITLSIVLERMRYEGVVDMFQTVKTLRTQRPAMVQTEDQYQLCY 560
Query: 1759 HAALEYLGSFDHY 1771
AALEYLGSFDHY
Sbjct: 561 RAALEYLGSFDHY 573
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/25 (84%), Positives = 23/25 (92%)
Query: 1726 LPVGPLIVHCSAGVGRTGCFIVIDA 1750
L GP++VHCSAGVGRTGCFIVIDA
Sbjct: 207 LDAGPMVVHCSAGVGRTGCFIVIDA 231
>pdb|2NV5|A Chain A, Crystal Structure Of A C-Terminal Phosphatase Domain Of
Rattus Norvegicus Ortholog Of Human Protein Tyrosine
Phosphatase, Receptor Type, D (Ptprd)
pdb|2NV5|B Chain B, Crystal Structure Of A C-Terminal Phosphatase Domain Of
Rattus Norvegicus Ortholog Of Human Protein Tyrosine
Phosphatase, Receptor Type, D (Ptprd)
pdb|2NV5|C Chain C, Crystal Structure Of A C-Terminal Phosphatase Domain Of
Rattus Norvegicus Ortholog Of Human Protein Tyrosine
Phosphatase, Receptor Type, D (Ptprd)
Length = 299
Score = 496 bits (1278), Expect = e-140, Method: Compositional matrix adjust.
Identities = 225/300 (75%), Positives = 255/300 (85%), Gaps = 11/300 (3%)
Query: 192 MVSHPPIPISRLAQHIENLKANDNLKFSQEYESIEPGQQFTWDHSSMEMNKAKNRYANVI 251
+ SHPPIPI LA HIE LKANDNLKFSQEYESI+PGQQFTW+HS++E+NK KNRYANVI
Sbjct: 3 LASHPPIPILELADHIERLKANDNLKFSQEYESIDPGQQFTWEHSNLEVNKPKNRYANVI 62
Query: 252 AYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVT 311
AYDHSRV+LS ++GIPGSDY+NANY DGYRK NAY+ATQG L ET GDFWRM+WE RS T
Sbjct: 63 AYDHSRVLLSAIEGIPGSDYVNANYIDGYRKQNAYIATQGSLPETFGDFWRMIWEQRSAT 122
Query: 312 IVMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYCIRTFMINKGADSERRE 371
+VMMTKLEER+R+KCDQYWPSRGTET+G + VTL D ELA+YC+RTF + K SE+RE
Sbjct: 123 VVMMTKLEERSRVKCDQYWPSRGTETHGLVQVTLLDTVELATYCVRTFALYKNGSSEKRE 182
Query: 372 IKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGR 431
++Q QFTAWPDHGVPEHP PFL FLRRV+ NP GP++VHCSAGVGR
Sbjct: 183 VRQFQFTAWPDHGVPEHPTPFLAFLRRVKTCNPPD-----------AGPMVVHCSAGVGR 231
Query: 432 TGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLEAVLCGNTE 491
TGCFIVIDAM+ERIKH+KTVDIYGHVT +RAQRNYMVQTEDQY+FIHDALLEAV CGNTE
Sbjct: 232 TGCFIVIDAMLERIKHEKTVDIYGHVTLMRAQRNYMVQTEDQYIFIHDALLEAVTCGNTE 291
Score = 445 bits (1144), Expect = e-124, Method: Compositional matrix adjust.
Identities = 200/271 (73%), Positives = 230/271 (84%), Gaps = 11/271 (4%)
Query: 732 QTESIEPGQQFTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGY 791
+ ESI+PGQQFTW+HS++E+NK KNRYANVIAYDHSRV+LS ++GIPGSDY+NANY DGY
Sbjct: 32 EYESIDPGQQFTWEHSNLEVNKPKNRYANVIAYDHSRVLLSAIEGIPGSDYVNANYIDGY 91
Query: 792 RKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGH 851
RK NAY+ATQG L ET GDFWRM+WE RS T+VMMTKLEER+R+KCDQYWPSRGTET+G
Sbjct: 92 RKQNAYIATQGSLPETFGDFWRMIWEQRSATVVMMTKLEERSRVKCDQYWPSRGTETHGL 151
Query: 852 ITVTLQDVQELASYCIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVR 911
+ VTL D ELA+YC+RTF + K SE+RE++Q QFTAWPDHGVPEHP PFL FLRRV+
Sbjct: 152 VQVTLLDTVELATYCVRTFALYKNGSSEKREVRQFQFTAWPDHGVPEHPTPFLAFLRRVK 211
Query: 912 AMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCL 971
NP GP++VHCSAGVGRTGCFIVIDAM+ERIKH+KTVDIYGHVT +
Sbjct: 212 TCNPPD-----------AGPMVVHCSAGVGRTGCFIVIDAMLERIKHEKTVDIYGHVTLM 260
Query: 972 RAQRNYMVQTEDQYMFIHDALLEAVLCGNTE 1002
RAQRNYMVQTEDQY+FIHDALLEAV CGNTE
Sbjct: 261 RAQRNYMVQTEDQYIFIHDALLEAVTCGNTE 291
Score = 132 bits (331), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/182 (38%), Positives = 97/182 (53%), Gaps = 32/182 (17%)
Query: 1315 ASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFIDGYRLRSAYIATQGPLAD 1374
++L NK KNR +++ + SRV L+ + GI GSDY+NA++IDGYR ++AYIATQG L +
Sbjct: 47 SNLEVNKPKNRYANVIAYDHSRVLLSAIEGIPGSDYVNANYIDGYRKQNAYIATQGSLPE 106
Query: 1375 TTEDFWRMLWEHNSTIVVMLTKLKEMGR------------------------------YV 1404
T DFWRM+WE S VVM+TKL+E R Y
Sbjct: 107 TFGDFWRMIWEQRSATVVMMTKLEERSRVKCDQYWPSRGTETHGLVQVTLLDTVELATYC 166
Query: 1405 LREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVH 1464
+R F + + R +RQFQ WP+ GVP+ F+ F+ +V GP+ VH
Sbjct: 167 VRTFALYKNGSSEKREVRQFQFTAWPDHGVPEHPTPFLAFLRRVKTCNPP--DAGPMVVH 224
Query: 1465 CS 1466
CS
Sbjct: 225 CS 226
Score = 123 bits (309), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 55/68 (80%), Positives = 63/68 (92%)
Query: 595 LAQHIENLKANDNLKFSQEYESIEPGQQFTWDHSSMEMNKAKNRYANVIAYDHSRVILST 654
LA HIE LKANDNLKFSQEYESI+PGQQFTW+HS++E+NK KNRYANVIAYDHSRV+LS
Sbjct: 14 LADHIERLKANDNLKFSQEYESIDPGQQFTWEHSNLEVNKPKNRYANVIAYDHSRVLLSA 73
Query: 655 VDGIPGRD 662
++GIPG D
Sbjct: 74 IEGIPGSD 81
Score = 110 bits (275), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 86/159 (54%), Gaps = 2/159 (1%)
Query: 1487 QLSFCSVLIAYLVLFSQEKCHQYWPSERSIRYEWFVVEPIAEYNMPQYVLREFKVTDARD 1546
Q S V++ L S+ KC QYWPS + + V + + Y +R F +
Sbjct: 118 QRSATVVMMTKLEERSRVKCDQYWPSRGTETHGLVQVTLLDTVELATYCVRTFALYKNGS 177
Query: 1547 ATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVF 1606
+ R +RQFQ WP+ GVP+ F+ F+ +V GP+ VHCSAGVGRTG F
Sbjct: 178 SEKREVRQFQFTAWPDHGVPEHPTPFLAFLRRVKTCNPP--DAGPMVVHCSAGVGRTGCF 235
Query: 1607 ITLSIVLERMQYEGVIDLFQTVRILRTQRPAMVQTEHLY 1645
I + +LER+++E +D++ V ++R QR MVQTE Y
Sbjct: 236 IVIDAMLERIKHEKTVDIYGHVTLMRAQRNYMVQTEDQY 274
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 40/53 (75%)
Query: 682 GPITVHCSAGVGRTGVFITLSIVLERMQYEGVIDLFQTVRILRTQRPAMVQTE 734
GP+ VHCSAGVGRTG FI + +LER+++E +D++ V ++R QR MVQTE
Sbjct: 219 GPMVVHCSAGVGRTGCFIVIDAMLERIKHEKTVDIYGHVTLMRAQRNYMVQTE 271
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/23 (86%), Positives = 22/23 (95%)
Query: 1728 VGPLIVHCSAGVGRTGCFIVIDA 1750
GP++VHCSAGVGRTGCFIVIDA
Sbjct: 218 AGPMVVHCSAGVGRTGCFIVIDA 240
>pdb|2JJD|A Chain A, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|B Chain B, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|C Chain C, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|D Chain D, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|E Chain E, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|F Chain F, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
Length = 599
Score = 404 bits (1039), Expect = e-112, Method: Compositional matrix adjust.
Identities = 231/575 (40%), Positives = 324/575 (56%), Gaps = 51/575 (8%)
Query: 197 PIPISRLAQHIENLKANDNLKFSQEYESIEPGQ-QFTWDHSSMEMNKAKNRYANVIAYDH 255
PIP+ L + I A+D +F +E+ S+ G Q T++ ++ E N+ KNRY N++ DH
Sbjct: 9 PIPVEHLEEEIRIRSADDCKQFREEFNSLPSGHIQGTFELANKEENREKNRYPNILPNDH 68
Query: 256 SRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMM 315
SRVILS +DGIP SDYINA+Y DGY++ N ++A QGP QET+ DFWRMVWE +S TIVM+
Sbjct: 69 SRVILSQLDGIPCSDYINASYIDGYKEKNKFIAAQGPKQETVNDFWRMVWEQKSATIVML 128
Query: 316 TKLEERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYCIRTFMIN----KGADSERRE 371
T L+ER KC QYWP +G TYG+I V ++D L Y IR F I G + R
Sbjct: 129 TNLKERKEEKCHQYWPDQGCWTYGNIRVCVEDCVVLVDYTIRKFCIQPQLPDGCKAPRL- 187
Query: 372 IKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGR 431
+ QL FT+WPD GVP P L FL++V+ +NP + GP++VHCSAGVGR
Sbjct: 188 VSQLHFTSWPDFGVPFTPIGMLKFLKKVKTLNP-----------VHAGPIVVHCSAGVGR 236
Query: 432 TGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLEAVLCGNTE 491
TG FIVIDAM+ + ++ VD++ V+ +R QR MVQT+ QY FI+ ALLE L G+TE
Sbjct: 237 TGTFIVIDAMMAMMHAEQKVDVFEFVSRIRNQRPQMVQTDMQYTFIYQALLEYYLYGDTE 296
Query: 492 IPARSLHVHIQKLMSMEVGDTSTGMELEFKKLSNIRAEPSRFISASLPCNKHKNRLVHIL 551
+ SL H+Q + G+E EF+KL+N+R + +LP N K R++ I+
Sbjct: 297 LDVSSLEKHLQTMHGTTTHFDKIGLEEEFRKLTNVRIMKENMRTGNLPANMKKARVIQII 356
Query: 552 PVESSRVCLTPVRGDGFIDFIGQV----HKTKEQF-GQDGPITVHCSRLAQHIENLKAND 606
P + +RV L+ RG + D+I ++ K+ F GP+ + I K++
Sbjct: 357 PYDFNRVILSMKRGQEYTDYINASFIDGYRQKDYFIATQGPLAHTVEDFWRMIWEWKSHT 416
Query: 607 NLKFSQEYESIEPGQQFTW------DHSSMEMNKAKNRYANVIAYDHSRVILSTVD---- 656
+ ++ E + W H + + + + I+ V L+
Sbjct: 417 IVMLTEVQEREQDKCYQYWPTEGSVTHGEITIEIKNDTLSEAISIRDFLVTLNQPQARQG 476
Query: 657 -----------------GIPGR-DGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVF 698
GIP G ID I V K ++Q G + PITVHCSAG GRTG F
Sbjct: 477 EQVRVVRQFHFHGWPEIGIPAEGKGMIDLIAAVQKQQQQTG-NHPITVHCSAGAGRTGTF 535
Query: 699 ITLSIVLERMQYEGVIDLFQTVRILRTQRPAMVQT 733
I LS +LER++ EG++D+FQ V+ LR QRP MVQT
Sbjct: 536 IALSNILERVKAEGLLDVFQAVKSLRLQRPHMVQT 570
Score = 275 bits (704), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 138/271 (50%), Positives = 181/271 (66%), Gaps = 16/271 (5%)
Query: 741 QFTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVAT 800
Q T++ ++ E N+ KNRY N++ DHSRVILS +DGIP SDYINA+Y DGY++ N ++A
Sbjct: 43 QGTFELANKEENREKNRYPNILPNDHSRVILSQLDGIPCSDYINASYIDGYKEKNKFIAA 102
Query: 801 QGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDVQ 860
QGP QET+ DFWRMVWE +S TIVM+T L+ER KC QYWP +G TYG+I V ++D
Sbjct: 103 QGPKQETVNDFWRMVWEQKSATIVMLTNLKERKEEKCHQYWPDQGCWTYGNIRVCVEDCV 162
Query: 861 ELASYCIRTFMIN----KGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPG 916
L Y IR F I G + R + QL FT+WPD GVP P L FL++V+ +NP
Sbjct: 163 VLVDYTIRKFCIQPQLPDGCKAPRL-VSQLHFTSWPDFGVPFTPIGMLKFLKKVKTLNP- 220
Query: 917 TNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRN 976
+ GP++VHCSAGVGRTG FIVIDAM+ + ++ VD++ V+ +R QR
Sbjct: 221 ----------VHAGPIVVHCSAGVGRTGTFIVIDAMMAMMHAEQKVDVFEFVSRIRNQRP 270
Query: 977 YMVQTEDQYMFIHDALLEAVLCGNTEIPASS 1007
MVQT+ QY FI+ ALLE L G+TE+ SS
Sbjct: 271 QMVQTDMQYTFIYQALLEYYLYGDTELDVSS 301
Score = 225 bits (574), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 170/592 (28%), Positives = 263/592 (44%), Gaps = 115/592 (19%)
Query: 500 HIQKLMSMEVGDTSTGMELEFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSRVC 559
H+++ + + D EF L + + + F A+ N+ KNR +ILP + SRV
Sbjct: 14 HLEEEIRIRSADDCKQFREEFNSLPSGHIQGT-FELANKEENREKNRYPNILPNDHSRVI 72
Query: 560 LTPVRGDGFIDFIGQVH----KTKEQF-GQDGPITVHCSRLAQHIENLKAND-----NLK 609
L+ + G D+I + K K +F GP + + + K+ NLK
Sbjct: 73 LSQLDGIPCSDYINASYIDGYKEKNKFIAAQGPKQETVNDFWRMVWEQKSATIVMLTNLK 132
Query: 610 FSQEYESIEPGQQFTWDHSSMEMNKAKNRYAN-VIAYDHSRVILSTVDGIPGRDGFIDFI 668
+E E Q+ D + + V+ D++ +P +
Sbjct: 133 ERKE----EKCHQYWPDQGCWTYGNIRVCVEDCVVLVDYTIRKFCIQPQLPDGCKAPRLV 188
Query: 669 GQVHKTK-EQFG---------------------QDGPITVHCSAGVGRTGVFITLSIVLE 706
Q+H T FG GPI VHCSAGVGRTG FI + ++
Sbjct: 189 SQLHFTSWPDFGVPFTPIGMLKFLKKVKTLNPVHAGPIVVHCSAGVGRTGTFIVIDAMMA 248
Query: 707 RMQYEGVIDLFQTVRILRTQRPAMVQTESIEPGQQFTW----------------DHSSME 750
M E +D+F+ V +R QRP M ++ Q+T+ D SS+E
Sbjct: 249 MMHAEQKVDVFEFVSRIRNQRPQM-----VQTDMQYTFIYQALLEYYLYGDTELDVSSLE 303
Query: 751 -----------------------------------------MNKAKNRYANVIAYDHSRV 769
N K R +I YD +RV
Sbjct: 304 KHLQTMHGTTTHFDKIGLEEEFRKLTNVRIMKENMRTGNLPANMKKARVIQIIPYDFNRV 363
Query: 770 ILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKL 829
ILS G +DYINA++ DGYR+ + ++ATQGPL T+ DFWRM+WE +S TIVM+T++
Sbjct: 364 ILSMKRGQEYTDYINASFIDGYRQKDYFIATQGPLAHTVEDFWRMIWEWKSHTIVMLTEV 423
Query: 830 EERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYCIRTFMINKGADSER-----REIK 884
+ER + KC QYWP+ G+ T+G IT+ +++ + IR F++ R R ++
Sbjct: 424 QEREQDKCYQYWPTEGSVTHGEITIEIKNDTLSEAISIRDFLVTLNQPQARQGEQVRVVR 483
Query: 885 QLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTG 944
Q F WP+ G+P + + V+ T + P+ VHCSAG GRTG
Sbjct: 484 QFHFHGWPEIGIPAEGKGMIDLIAAVQKQQQQTGN----------HPITVHCSAGAGRTG 533
Query: 945 CFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLEAV 996
FI + ++ER+K + +D++ V LR QR +MVQT +QY F + + + +
Sbjct: 534 TFIALSNILERVKAEGLLDVFQAVKSLRLQRPHMVQTLEQYEFCYKVVQDFI 585
Score = 193 bits (490), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 96/255 (37%), Positives = 148/255 (58%), Gaps = 15/255 (5%)
Query: 236 SSMEMNKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQE 295
++ N K R +I YD +RVILS G +DYINA++ DGYR+ + ++ATQGPL
Sbjct: 341 GNLPANMKKARVIQIIPYDFNRVILSMKRGQEYTDYINASFIDGYRQKDYFIATQGPLAH 400
Query: 296 TLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYC 355
T+ DFWRM+WE +S TIVM+T+++ER + KC QYWP+ G+ T+G IT+ +++ +
Sbjct: 401 TVEDFWRMIWEWKSHTIVMLTEVQEREQDKCYQYWPTEGSVTHGEITIEIKNDTLSEAIS 460
Query: 356 IRTFMINKGADSER-----REIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLE 410
IR F++ R R ++Q F WP+ G+P + + V+ T +
Sbjct: 461 IRDFLVTLNQPQARQGEQVRVVRQFHFHGWPEIGIPAEGKGMIDLIAAVQKQQQQTGN-- 518
Query: 411 SSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQT 470
P+ VHCSAG GRTG FI + ++ER+K + +D++ V LR QR +MVQT
Sbjct: 519 --------HPITVHCSAGAGRTGTFIALSNILERVKAEGLLDVFQAVKSLRLQRPHMVQT 570
Query: 471 EDQYMFIHDALLEAV 485
+QY F + + + +
Sbjct: 571 LEQYEFCYKVVQDFI 585
Score = 152 bits (383), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 85/204 (41%), Positives = 112/204 (54%), Gaps = 36/204 (17%)
Query: 1298 EFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFID 1357
EF+KL+N+R + +LP N K R++ I+P + +RV L+ RG E +DYINASFID
Sbjct: 324 EFRKLTNVRIMKENMRTGNLPANMKKARVIQIIPYDFNRVILSMKRGQEYTDYINASFID 383
Query: 1358 GYRLRSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR--------------- 1402
GYR + +IATQGPLA T EDFWRM+WE S +VMLT+++E +
Sbjct: 384 GYRQKDYFIATQGPLAHTVEDFWRMIWEWKSHTIVMLTEVQEREQDKCYQYWPTEGSVTH 443
Query: 1403 ---------------YVLREFKVT----DARDATS-RTLRQFQLIDWPEQGVPKSGDGFI 1442
+R+F VT AR R +RQF WPE G+P G G I
Sbjct: 444 GEITIEIKNDTLSEAISIRDFLVTLNQPQARQGEQVRVVRQFHFHGWPEIGIPAEGKGMI 503
Query: 1443 DFIGQVHKTKEQFGQDGPITVHCS 1466
D I V K ++Q G + PITVHCS
Sbjct: 504 DLIAAVQKQQQQTG-NHPITVHCS 526
Score = 131 bits (330), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/148 (47%), Positives = 91/148 (61%), Gaps = 6/148 (4%)
Query: 1503 QEKCHQYWPSERSIRYEWFVVEPIAEYNMPQYVLREFKVT----DARDATS-RTLRQFQL 1557
Q+KC+QYWP+E S+ + +E + +R+F VT AR R +RQF
Sbjct: 428 QDKCYQYWPTEGSVTHGEITIEIKNDTLSEAISIRDFLVTLNQPQARQGEQVRVVRQFHF 487
Query: 1558 IDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQ 1617
WPE G+P G G ID I V K ++Q G + PITVHCSAG GRTG FI LS +LER++
Sbjct: 488 HGWPEIGIPAEGKGMIDLIAAVQKQQQQTG-NHPITVHCSAGAGRTGTFIALSNILERVK 546
Query: 1618 YEGVIDLFQTVRILRTQRPAMVQTEHLY 1645
EG++D+FQ V+ LR QRP MVQT Y
Sbjct: 547 AEGLLDVFQAVKSLRLQRPHMVQTLEQY 574
Score = 112 bits (280), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 91/181 (50%), Gaps = 37/181 (20%)
Query: 1320 NKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFIDGYRLRSAYIATQGPLADTTEDF 1379
N+ KNR +ILP + SRV L+ + GI SDYINAS+IDGY+ ++ +IA QGP +T DF
Sbjct: 54 NREKNRYPNILPNDHSRVILSQLDGIPCSDYINASYIDGYKEKNKFIAAQGPKQETVNDF 113
Query: 1380 WRMLWEHNSTIVVMLTKLKE------------------------------MGRYVLREF- 1408
WRM+WE S +VMLT LKE + Y +R+F
Sbjct: 114 WRMVWEQKSATIVMLTNLKERKEEKCHQYWPDQGCWTYGNIRVCVEDCVVLVDYTIRKFC 173
Query: 1409 ---KVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHC 1465
++ D A R + Q WP+ GVP + G + F+ +V GPI VHC
Sbjct: 174 IQPQLPDGCKA-PRLVSQLHFTSWPDFGVPFTPIGMLKFLKKVKTLNPVHA--GPIVVHC 230
Query: 1466 S 1466
S
Sbjct: 231 S 231
Score = 96.7 bits (239), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 83/164 (50%), Gaps = 7/164 (4%)
Query: 1487 QLSFCSVLIAYLVLFSQEKCHQYWPSERSIRYEWFVVEPIAEYNMPQYVLREF----KVT 1542
Q S V++ L +EKCHQYWP + Y V + Y +R+F ++
Sbjct: 120 QKSATIVMLTNLKERKEEKCHQYWPDQGCWTYGNIRVCVEDCVVLVDYTIRKFCIQPQLP 179
Query: 1543 DARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGR 1602
D A R + Q WP+ GVP + G + F+ +V GPI VHCSAGVGR
Sbjct: 180 DGCKA-PRLVSQLHFTSWPDFGVPFTPIGMLKFLKKVKTLNPVHA--GPIVVHCSAGVGR 236
Query: 1603 TGVFITLSIVLERMQYEGVIDLFQTVRILRTQRPAMVQTEHLYT 1646
TG FI + ++ M E +D+F+ V +R QRP MVQT+ YT
Sbjct: 237 TGTFIVIDAMMAMMHAEQKVDVFEFVSRIRNQRPQMVQTDMQYT 280
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/23 (82%), Positives = 21/23 (91%)
Query: 1728 VGPLIVHCSAGVGRTGCFIVIDA 1750
GP++VHCSAGVGRTG FIVIDA
Sbjct: 223 AGPIVVHCSAGVGRTGTFIVIDA 245
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 28/73 (38%), Gaps = 30/73 (41%)
Query: 1730 PLIVHCSAGVGRTGCFI------------------------------VIDAKEQYQFCYH 1759
P+ VHCSAG GRTG FI ++ EQY+FCY
Sbjct: 520 PITVHCSAGAGRTGTFIALSNILERVKAEGLLDVFQAVKSLRLQRPHMVQTLEQYEFCYK 579
Query: 1760 AALEYLGSFDHYT 1772
+++ F Y
Sbjct: 580 VVQDFIDIFSDYA 592
>pdb|2NLK|A Chain A, Crystal Structure Of D1 And D2 Catalytic Domains Of Human
Protein Tyrosine Phosphatase Gamma (D1+d2 Ptprg)
Length = 627
Score = 339 bits (870), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 209/590 (35%), Positives = 310/590 (52%), Gaps = 81/590 (13%)
Query: 198 IPISRLAQHIENLKANDNLKFSQEYESIE---PGQQFTWDHSSMEMNKAKNRYANVIAYD 254
IP+ + +HI L +N+ FS+++E ++ T +HS+ NK KNRY N++AYD
Sbjct: 3 IPVKQFVKHIGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYD 62
Query: 255 HSRVILSTVDGIPG--SDYINANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTI 312
HSRV L + G SDYINANY DGY K AY+ATQGPL+ T DFWRM+WE + I
Sbjct: 63 HSRVKLRPLPGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGII 122
Query: 313 VMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYCIRTFMIN---------- 362
VM+T L E+ R KCDQYWP+ +E YG+I VTL+ + A Y +R F I
Sbjct: 123 VMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTKVKKGQKG 182
Query: 363 --KGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLP-VG 419
KG +ER I Q +T WPD GVPE+ P L F+RR SS +P G
Sbjct: 183 NPKGRQNERVVI-QYHYTQWPDMGVPEYALPVLTFVRR------------SSAARMPETG 229
Query: 420 PLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHD 479
P++VHCSAGVGRTG +IVID+M+++IK TV++ G + +R QRNY+VQTE+QY+FIHD
Sbjct: 230 PVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHD 289
Query: 480 ALLEAVLCGNTEIPARSLHVHIQKLMSMEVGDTSTGMELEFKKLSNIRAEPSRFISASLP 539
ALLEA+L TE+ + LH ++ ++ VG T +E +FK ++ A+ SA
Sbjct: 290 ALLEAILGKETEVSSNQLHSYVNSILIPGVGG-KTRLEKQFKLVTQCNAKYVECFSAQKE 348
Query: 540 CNKHKNRLVHILPVESSRVCLTPV---RGDGFID--FIGQVHKTKEQFGQDGPITVHCSR 594
CNK KNR ++P E +RV L P+ +G +I+ +I +++ E P+
Sbjct: 349 CNKEKNRNSSVVPSERARVGLAPLPGMKGTDYINASYIMGYYRSNEFIITQHPLPHTTKD 408
Query: 595 LAQHIENLKAN------DNLKFSQEYESIEPGQQFTWDHSSMEMNKAKNRYANVIAYDHS 648
+ I + A DN +++ +F + S E + +I+ D
Sbjct: 409 FWRMIWDHNAQIIVMLPDNQSLAED--------EFVYWPSREESMNCEAFTVTLISKD-- 458
Query: 649 RVILSTVDGIPGRDGFI-----DFIGQVHK-----------------------TKEQFGQ 680
R+ LS + I D + D++ +V +E +
Sbjct: 459 RLCLSNEEQIIIHDFILEATQDDYVLEVRHFQCPKWPNPDAPISSTFELINVIKEEALTR 518
Query: 681 DGPITVHCSAGVGRTGVFITLSIVLERMQYEGVIDLFQTVRILRTQRPAM 730
DGP VH G G+ L+ + ++++ E +D+FQ +++ RP +
Sbjct: 519 DGPTIVHDEYGAVSAGMLCALTTLSQQLENENAVDVFQVAKMINLMRPGV 568
Score = 275 bits (702), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 143/283 (50%), Positives = 184/283 (65%), Gaps = 29/283 (10%)
Query: 742 FTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVDGIPG--SDYINANYCDGYRKHNAYVA 799
T +HS+ NK KNRY N++AYDHSRV L + G SDYINANY DGY K AY+A
Sbjct: 39 ITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVDGYNKAKAYIA 98
Query: 800 TQGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDV 859
TQGPL+ T DFWRM+WE + IVM+T L E+ R KCDQYWP+ +E YG+I VTL+
Sbjct: 99 TQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKST 158
Query: 860 QELASYCIRTFMIN------------KGADSERREIKQLQFTAWPDHGVPEHPAPFLLFL 907
+ A Y +R F I KG +ER I Q +T WPD GVPE+ P L F+
Sbjct: 159 KIHACYTVRRFSIRNTKVKKGQKGNPKGRQNERVVI-QYHYTQWPDMGVPEYALPVLTFV 217
Query: 908 RRVRAMNPGTNSLESSGVNLP-VGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYG 966
RR SS +P GP++VHCSAGVGRTG +IVID+M+++IK TV++ G
Sbjct: 218 RR------------SSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLG 265
Query: 967 HVTCLRAQRNYMVQTEDQYMFIHDALLEAVLCGNTEIPASSQM 1009
+ +R QRNY+VQTE+QY+FIHDALLEA+L TE+ +S+Q+
Sbjct: 266 FLKHIRTQRNYLVQTEEQYIFIHDALLEAILGKETEV-SSNQL 307
Score = 122 bits (305), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 100/206 (48%), Gaps = 50/206 (24%)
Query: 1304 NIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLTPVRGIEG--SDYINASFIDGYRL 1361
NI AE S P NKHKNR ++IL + SRV L P+ G + SDYINA+++DGY
Sbjct: 38 NITAEHSNH-----PENKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVDGYNK 92
Query: 1362 RSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------------- 1402
AYIATQGPL T EDFWRM+WE N+ I+VM+T L E GR
Sbjct: 93 AKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNII 152
Query: 1403 -----------YVLREFKVTDAR-----------DATSRTLRQFQLIDWPEQGVPKSGDG 1440
Y +R F + + + R + Q+ WP+ GVP+
Sbjct: 153 VTLKSTKIHACYTVRRFSIRNTKVKKGQKGNPKGRQNERVVIQYHYTQWPDMGVPEYALP 212
Query: 1441 FIDFIGQVHKTKEQFGQDGPITVHCS 1466
+ F+ + + + + GP+ VHCS
Sbjct: 213 VLTFVRR--SSAARMPETGPVLVHCS 236
Score = 109 bits (273), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/286 (27%), Positives = 128/286 (44%), Gaps = 30/286 (10%)
Query: 750 EMNKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLG 809
E NK KNR ++V+ + +RV L+ + G+ G+DYINA+Y GY + N ++ TQ PL T
Sbjct: 348 ECNKEKNRNSSVVPSERARVGLAPLPGMKGTDYINASYIMGYYRSNEFIITQHPLPHTTK 407
Query: 810 DFWRMVWELRSVTIVMMTKLEERTRIKCDQ--YWPSRGTETYGH-ITVTLQDVQELA--- 863
DFWRM+W+ + IVM L + + D+ YWPSR TVTL L
Sbjct: 408 DFWRMIWDHNAQIIVM---LPDNQSLAEDEFVYWPSREESMNCEAFTVTLISKDRLCLSN 464
Query: 864 --SYCIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLE 921
I F++ D E++ Q WP+ P L+ + + A+
Sbjct: 465 EEQIIIHDFILEATQDDYVLEVRHFQCPKWPNPDAPISSTFELINVIKEEALTRD----- 519
Query: 922 SSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQT 981
GP IVH G G + + ++++++ VD++ + R +
Sbjct: 520 --------GPTIVHDEYGAVSAGMLCALTTLSQQLENENAVDVFQVAKMINLMRPGVFTD 571
Query: 982 EDQYMFIHDALLEAVLC---GNTEIPASSQ---MITRKDDPTVSLQ 1021
+QY FI+ A+L V GN + +I + DP S++
Sbjct: 572 IEQYQFIYKAMLSLVSTKENGNGPMTVDKNGAVLIADESDPAESME 617
Score = 108 bits (271), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 117/255 (45%), Gaps = 24/255 (9%)
Query: 239 EMNKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLG 298
E NK KNR ++V+ + +RV L+ + G+ G+DYINA+Y GY + N ++ TQ PL T
Sbjct: 348 ECNKEKNRNSSVVPSERARVGLAPLPGMKGTDYINASYIMGYYRSNEFIITQHPLPHTTK 407
Query: 299 DFWRMVWELRSVTIVMMTKLEERTRIKCDQ--YWPSRGTETYGH-ITVTLQDVQELA--- 352
DFWRM+W+ + IVM L + + D+ YWPSR TVTL L
Sbjct: 408 DFWRMIWDHNAQIIVM---LPDNQSLAEDEFVYWPSREESMNCEAFTVTLISKDRLCLSN 464
Query: 353 --SYCIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLE 410
I F++ D E++ Q WP+ P L+ + + A+
Sbjct: 465 EEQIIIHDFILEATQDDYVLEVRHFQCPKWPNPDAPISSTFELINVIKEEALTRD----- 519
Query: 411 SSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQT 470
GP IVH G G + + ++++++ VD++ + R +
Sbjct: 520 --------GPTIVHDEYGAVSAGMLCALTTLSQQLENENAVDVFQVAKMINLMRPGVFTD 571
Query: 471 EDQYMFIHDALLEAV 485
+QY FI+ A+L V
Sbjct: 572 IEQYQFIYKAMLSLV 586
Score = 107 bits (267), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 99/211 (46%), Gaps = 43/211 (20%)
Query: 1293 VRGKT----EFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGS 1348
V GKT +FK ++ A+ SA CNK KNR ++P E +RV L P+ G++G+
Sbjct: 319 VGGKTRLEKQFKLVTQCNAKYVECFSAQKECNKEKNRNSSVVPSERARVGLAPLPGMKGT 378
Query: 1349 DYINASFIDGYRLRSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMG------- 1401
DYINAS+I GY + +I TQ PL TT+DFWRM+W+HN+ I+VML + +
Sbjct: 379 DYINASYIMGYYRSNEFIITQHPLPHTTKDFWRMIWDHNAQIIVMLPDNQSLAEDEFVYW 438
Query: 1402 ----------------------------RYVLREFKVTDARDATSRTLRQFQLIDWPEQG 1433
+ ++ +F + +D +R FQ WP
Sbjct: 439 PSREESMNCEAFTVTLISKDRLCLSNEEQIIIHDFILEATQDDYVLEVRHFQCPKWPNPD 498
Query: 1434 VPKSGDGFIDFIGQVHKTKEQFGQDGPITVH 1464
P S + I + +E +DGP VH
Sbjct: 499 APISST--FELINVI--KEEALTRDGPTIVH 525
Score = 91.3 bits (225), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 87/164 (53%), Gaps = 13/164 (7%)
Query: 1493 VLIAYLVLFSQEKCHQYWPSERSIRYEWFVV-----EPIAEYNMPQYVLREFKVTDARDA 1547
V+I LV + KC QYWP+E S Y +V + A Y + ++ +R KV +
Sbjct: 123 VMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTKVKKGQKG 182
Query: 1548 T------SRTLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVG 1601
R + Q+ WP+ GVP+ + F+ + + + + GP+ VHCSAGVG
Sbjct: 183 NPKGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRR--SSAARMPETGPVLVHCSAGVG 240
Query: 1602 RTGVFITLSIVLERMQYEGVIDLFQTVRILRTQRPAMVQTEHLY 1645
RTG +I + +L++++ + +++ ++ +RTQR +VQTE Y
Sbjct: 241 RTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQY 284
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 10/136 (7%)
Query: 1509 YWPS-ERSIRYEWFVVEPIAE-----YNMPQYVLREFKVTDARDATSRTLRQFQLIDWPE 1562
YWPS E S+ E F V I++ N Q ++ +F + +D +R FQ WP
Sbjct: 437 YWPSREESMNCEAFTVTLISKDRLCLSNEEQIIIHDFILEATQDDYVLEVRHFQCPKWPN 496
Query: 1563 QGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVI 1622
P S + I + +E +DGP VH G G+ L+ + ++++ E +
Sbjct: 497 PDAPISST--FELINVI--KEEALTRDGPTIVHDEYGAVSAGMLCALTTLSQQLENENAV 552
Query: 1623 DLFQTVRILRTQRPAM 1638
D+FQ +++ RP +
Sbjct: 553 DVFQVAKMINLMRPGV 568
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 56/106 (52%), Gaps = 12/106 (11%)
Query: 588 ITVHCSRLAQHIENLKANDNLKFSQEYESIE---PGQQFTWDHSSMEMNKAKNRYANVIA 644
+ + + +HI L +N+ FS+++E ++ T +HS+ NK KNRY N++A
Sbjct: 1 MAIPVKQFVKHIGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILA 60
Query: 645 YDHSRVILSTVDGIPGRDG----FI--DFIGQVHKTKEQFGQDGPI 684
YDHSRV L +PG+D +I +++ +K K GP+
Sbjct: 61 YDHSRVKLRP---LPGKDSKHSDYINANYVDGYNKAKAYIATQGPL 103
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 37/62 (59%), Gaps = 6/62 (9%)
Query: 1710 VLLFILKSSLESSGVNLP-VGPLIVHCSAGVGRTGCFIVIDAKEQYQFCYHAALEYLGSF 1768
VL F+ +SS +P GP++VHCSAGVGRTG +IVID+ Q Q + + LG
Sbjct: 213 VLTFVRRSS----AARMPETGPVLVHCSAGVGRTGTYIVIDSMLQ-QIKDKSTVNVLGFL 267
Query: 1769 DH 1770
H
Sbjct: 268 KH 269
>pdb|2C7S|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Kappa At 1.95a Resolution
Length = 313
Score = 327 bits (839), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 156/300 (52%), Positives = 203/300 (67%), Gaps = 12/300 (4%)
Query: 194 SHPPIPISRLAQHIENLKANDNLKFSQEYESIEPGQQFTWDHSSMEMNKAKNRYANVIAY 253
S P I ++ L QHI +K +D+ F +EYES GQ +WD + + N+AKNRY N+IAY
Sbjct: 22 SMPAIRVADLLQHINLMKTSDSYGFKEEYESFFEGQSASWDVAKKDQNRAKNRYGNIIAY 81
Query: 254 DHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIV 313
DHSRVIL V+ P SDYINANY DGY++ + Y+ATQGP+ ET+ DFWRM+W+ +S IV
Sbjct: 82 DHSRVILQPVEDDPSSDYINANYIDGYQRPSHYIATQGPVHETVYDFWRMIWQEQSACIV 141
Query: 314 MMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYCIRTFMINKGADSERREIK 373
M+T L E R+KC +YWP TE YG VT +++ LA Y +RTF + + +E RE+K
Sbjct: 142 MVTNLVEVGRVKCYKYWPD-DTEVYGDFKVTCVEMEPLAEYVVRTFTLERRGYNEIREVK 200
Query: 374 QLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTG 433
Q FT WPDHGVP H L F+RRV+ NP + GP++VHCSAG GRTG
Sbjct: 201 QFHFTGWPDHGVPYHATGLLSFIRRVKLSNPPS-----------AGPIVVHCSAGAGRTG 249
Query: 434 CFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLEAVLCGNTEIP 493
C+IVID M++ + + VDIY V LR++R MVQTE+QY+FIHDA+LEA LCG T IP
Sbjct: 250 CYIVIDIMLDMAEREGVVDIYNCVKALRSRRINMVQTEEQYIFIHDAILEACLCGETAIP 309
Score = 307 bits (787), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 151/307 (49%), Positives = 200/307 (65%), Gaps = 14/307 (4%)
Query: 700 TLSIVLERMQYEGVIDLFQTVRILRTQRPAMV--QTESIEPGQQFTWDHSSMEMNKAKNR 757
T ++ + M V DL Q + +++T + ES GQ +WD + + N+AKNR
Sbjct: 15 TENLYFQSMPAIRVADLLQHINLMKTSDSYGFKEEYESFFEGQSASWDVAKKDQNRAKNR 74
Query: 758 YANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDFWRMVWE 817
Y N+IAYDHSRVIL V+ P SDYINANY DGY++ + Y+ATQGP+ ET+ DFWRM+W+
Sbjct: 75 YGNIIAYDHSRVILQPVEDDPSSDYINANYIDGYQRPSHYIATQGPVHETVYDFWRMIWQ 134
Query: 818 LRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYCIRTFMINKGAD 877
+S IVM+T L E R+KC +YWP TE YG VT +++ LA Y +RTF + +
Sbjct: 135 EQSACIVMVTNLVEVGRVKCYKYWPD-DTEVYGDFKVTCVEMEPLAEYVVRTFTLERRGY 193
Query: 878 SERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCS 937
+E RE+KQ FT WPDHGVP H L F+RRV+ NP + GP++VHCS
Sbjct: 194 NEIREVKQFHFTGWPDHGVPYHATGLLSFIRRVKLSNPPS-----------AGPIVVHCS 242
Query: 938 AGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLEAVL 997
AG GRTGC+IVID M++ + + VDIY V LR++R MVQTE+QY+FIHDA+LEA L
Sbjct: 243 AGAGRTGCYIVIDIMLDMAEREGVVDIYNCVKALRSRRINMVQTEEQYIFIHDAILEACL 302
Query: 998 CGNTEIP 1004
CG T IP
Sbjct: 303 CGETAIP 309
Score = 120 bits (300), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 89/176 (50%), Gaps = 31/176 (17%)
Query: 1320 NKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFIDGYRLRSAYIATQGPLADTTEDF 1379
N+ KNR +I+ + SRV L PV SDYINA++IDGY+ S YIATQGP+ +T DF
Sbjct: 69 NRAKNRYGNIIAYDHSRVILQPVEDDPSSDYINANYIDGYQRPSHYIATQGPVHETVYDF 128
Query: 1380 WRMLWEHNSTIVVMLTKLKEMGR-----------------------------YVLREFKV 1410
WRM+W+ S +VM+T L E+GR YV+R F +
Sbjct: 129 WRMIWQEQSACIVMVTNLVEVGRVKCYKYWPDDTEVYGDFKVTCVEMEPLAEYVVRTFTL 188
Query: 1411 TDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCS 1466
R ++QF WP+ GVP G + FI +V + GPI VHCS
Sbjct: 189 ERRGYNEIREVKQFHFTGWPDHGVPYHATGLLSFIRRVKLSNPP--SAGPIVVHCS 242
Score = 114 bits (285), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 91/161 (56%), Gaps = 11/161 (6%)
Query: 1489 SFCSVLIAYLVLFSQEKCHQYWPSERSIRYEWFV----VEPIAEYNMPQYVLREFKVTDA 1544
S C V++ LV + KC++YWP + + ++ V +EP+AEY V+R F +
Sbjct: 137 SACIVMVTNLVEVGRVKCYKYWPDDTEVYGDFKVTCVEMEPLAEY-----VVRTFTLERR 191
Query: 1545 RDATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTG 1604
R ++QF WP+ GVP G + FI +V + GPI VHCSAG GRTG
Sbjct: 192 GYNEIREVKQFHFTGWPDHGVPYHATGLLSFIRRVKLSNPP--SAGPIVVHCSAGAGRTG 249
Query: 1605 VFITLSIVLERMQYEGVIDLFQTVRILRTQRPAMVQTEHLY 1645
+I + I+L+ + EGV+D++ V+ LR++R MVQTE Y
Sbjct: 250 CYIVIDIMLDMAEREGVVDIYNCVKALRSRRINMVQTEEQY 290
Score = 78.2 bits (191), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 578 TKEQFGQDGPITVHCSRLAQHIENLKANDNLKFSQEYESIEPGQQFTWDHSSMEMNKAKN 637
T+ + Q P + + L QHI +K +D+ F +EYES GQ +WD + + N+AKN
Sbjct: 15 TENLYFQSMP-AIRVADLLQHINLMKTSDSYGFKEEYESFFEGQSASWDVAKKDQNRAKN 73
Query: 638 RYANVIAYDHSRVILSTVDGIPGRDGF-IDFIGQVHKTKEQFGQDGPI 684
RY N+IAYDHSRVIL V+ P D ++I + GP+
Sbjct: 74 RYGNIIAYDHSRVILQPVEDDPSSDYINANYIDGYQRPSHYIATQGPV 121
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 77/296 (26%), Positives = 131/296 (44%), Gaps = 59/296 (19%)
Query: 492 IPARSLHVHIQKLMSMEVGDTSTGMELEFKKLSNIRAEPSRFISASLPCNKHKNRLVHIL 551
+PA + +Q + M+ D S G + E++ S + + + A N+ KNR +I+
Sbjct: 23 MPAIRVADLLQHINLMKTSD-SYGFKEEYE--SFFEGQSASWDVAKKDQNRAKNRYGNII 79
Query: 552 PVESSRVCLTPVRGDGFIDFI------------------GQVHKTKEQFG-----QDGPI 588
+ SRV L PV D D+I G VH+T F +
Sbjct: 80 AYDHSRVILQPVEDDPSSDYINANYIDGYQRPSHYIATQGPVHETVYDFWRMIWQEQSAC 139
Query: 589 TVHCSRLAQHIENLKAN----DNLKFSQEYE----SIEPGQQFTWDHSSMEMNKAKNRYA 640
V + L + + +K D+ + +++ +EP ++ ++E + N
Sbjct: 140 IVMVTNLVE-VGRVKCYKYWPDDTEVYGDFKVTCVEMEPLAEYVVRTFTLE-RRGYNEIR 197
Query: 641 NVIAY------DHSRVILSTVDGIPGR-DGFIDFIGQVHKTKEQFGQDGPITVHCSAGVG 693
V + DH G+P G + FI +V + GPI VHCSAG G
Sbjct: 198 EVKQFHFTGWPDH---------GVPYHATGLLSFIRRVKLSNPP--SAGPIVVHCSAGAG 246
Query: 694 RTGVFITLSIVLERMQYEGVIDLFQTVRILRTQRPAMVQTESIEPGQQFTWDHSSM 749
RTG +I + I+L+ + EGV+D++ V+ LR++R MVQTE +Q+ + H ++
Sbjct: 247 RTGCYIVIDIMLDMAEREGVVDIYNCVKALRSRRINMVQTE-----EQYIFIHDAI 297
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/21 (80%), Positives = 20/21 (95%)
Query: 1729 GPLIVHCSAGVGRTGCFIVID 1749
GP++VHCSAG GRTGC+IVID
Sbjct: 235 GPIVVHCSAGAGRTGCYIVID 255
>pdb|2OOQ|A Chain A, Crystal Structure Of The Human Receptor Phosphatase Ptprt
pdb|2OOQ|B Chain B, Crystal Structure Of The Human Receptor Phosphatase Ptprt
Length = 286
Score = 312 bits (800), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 150/295 (50%), Positives = 197/295 (66%), Gaps = 12/295 (4%)
Query: 198 IPISRLAQHIENLKANDNLKFSQEYESIEPGQQFTWDHSSMEMNKAKNRYANVIAYDHSR 257
I ++ L QHI +K F +EYE++ GQ +WD + + N+ KNRY N+I+YDHSR
Sbjct: 4 IRVADLLQHITQMKRGQGYGFKEEYEALPEGQTASWDTAKEDENRNKNRYGNIISYDHSR 63
Query: 258 VILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTK 317
V L +DG P SDYINANY DGY + Y+ATQGP+QET+ DFWRM+W+ S +IVM+T
Sbjct: 64 VRLLVLDGDPHSDYINANYIDGYHRPRHYIATQGPMQETVKDFWRMIWQENSASIVMVTN 123
Query: 318 LEERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYCIRTFMINKGADSERREIKQLQF 377
L E R+KC +YWP TE YG I VTL + + LA Y IRTF + K E RE++ F
Sbjct: 124 LVEVGRVKCVRYWPD-DTEVYGDIKVTLIETEPLAEYVIRTFTVQKKGYHEIRELRLFHF 182
Query: 378 TAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIV 437
T+WPDHGVP + L F+R+V+ +NP GP++VHCSAG GRTGCFI
Sbjct: 183 TSWPDHGVPCYATGLLGFVRQVKFLNPP-----------EAGPIVVHCSAGAGRTGCFIA 231
Query: 438 IDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLEAVLCGNTEI 492
ID M++ +++ VDI+ V LRAQR +VQTE+QY+F+HDA+LEA LCGNT I
Sbjct: 232 IDTMLDMAENEGVVDIFNCVRELRAQRVNLVQTEEQYVFVHDAILEACLCGNTAI 286
Score = 294 bits (753), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 141/272 (51%), Positives = 185/272 (68%), Gaps = 12/272 (4%)
Query: 732 QTESIEPGQQFTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGY 791
+ E++ GQ +WD + + N+ KNRY N+I+YDHSRV L +DG P SDYINANY DGY
Sbjct: 27 EYEALPEGQTASWDTAKEDENRNKNRYGNIISYDHSRVRLLVLDGDPHSDYINANYIDGY 86
Query: 792 RKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGH 851
+ Y+ATQGP+QET+ DFWRM+W+ S +IVM+T L E R+KC +YWP TE YG
Sbjct: 87 HRPRHYIATQGPMQETVKDFWRMIWQENSASIVMVTNLVEVGRVKCVRYWPD-DTEVYGD 145
Query: 852 ITVTLQDVQELASYCIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVR 911
I VTL + + LA Y IRTF + K E RE++ FT+WPDHGVP + L F+R+V+
Sbjct: 146 IKVTLIETEPLAEYVIRTFTVQKKGYHEIRELRLFHFTSWPDHGVPCYATGLLGFVRQVK 205
Query: 912 AMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCL 971
+NP GP++VHCSAG GRTGCFI ID M++ +++ VDI+ V L
Sbjct: 206 FLNPP-----------EAGPIVVHCSAGAGRTGCFIAIDTMLDMAENEGVVDIFNCVREL 254
Query: 972 RAQRNYMVQTEDQYMFIHDALLEAVLCGNTEI 1003
RAQR +VQTE+QY+F+HDA+LEA LCGNT I
Sbjct: 255 RAQRVNLVQTEEQYVFVHDAILEACLCGNTAI 286
Score = 119 bits (298), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 99/200 (49%), Gaps = 33/200 (16%)
Query: 1296 KTEFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASF 1355
K E++ L + + + +A N++KNR +I+ + SRV L + G SDYINA++
Sbjct: 25 KEEYEALP--EGQTASWDTAKEDENRNKNRYGNIISYDHSRVRLLVLDGDPHSDYINANY 82
Query: 1356 IDGYRLRSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------- 1402
IDGY YIATQGP+ +T +DFWRM+W+ NS +VM+T L E+GR
Sbjct: 83 IDGYHRPRHYIATQGPMQETVKDFWRMIWQENSASIVMVTNLVEVGRVKCVRYWPDDTEV 142
Query: 1403 ----------------YVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFIG 1446
YV+R F V R LR F WP+ GVP G + F+
Sbjct: 143 YGDIKVTLIETEPLAEYVIRTFTVQKKGYHEIRELRLFHFTSWPDHGVPCYATGLLGFVR 202
Query: 1447 QVHKTKEQFGQDGPITVHCS 1466
QV + GPI VHCS
Sbjct: 203 QVKFLNPP--EAGPIVVHCS 220
Score = 110 bits (275), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 63/157 (40%), Positives = 82/157 (52%), Gaps = 11/157 (7%)
Query: 1493 VLIAYLVLFSQEKCHQYWPSER----SIRYEWFVVEPIAEYNMPQYVLREFKVTDARDAT 1548
V++ LV + KC +YWP + I+ EP+AEY V+R F V
Sbjct: 119 VMVTNLVEVGRVKCVRYWPDDTEVYGDIKVTLIETEPLAEY-----VIRTFTVQKKGYHE 173
Query: 1549 SRTLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFIT 1608
R LR F WP+ GVP G + F+ QV + GPI VHCSAG GRTG FI
Sbjct: 174 IRELRLFHFTSWPDHGVPCYATGLLGFVRQVKFLNPP--EAGPIVVHCSAGAGRTGCFIA 231
Query: 1609 LSIVLERMQYEGVIDLFQTVRILRTQRPAMVQTEHLY 1645
+ +L+ + EGV+D+F VR LR QR +VQTE Y
Sbjct: 232 IDTMLDMAENEGVVDIFNCVRELRAQRVNLVQTEEQY 268
Score = 74.3 bits (181), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
Query: 588 ITVHCSRLAQHIENLKANDNLKFSQEYESIEPGQQFTWDHSSMEMNKAKNRYANVIAYDH 647
+ + + L QHI +K F +EYE++ GQ +WD + + N+ KNRY N+I+YDH
Sbjct: 2 MAIRVADLLQHITQMKRGQGYGFKEEYEALPEGQTASWDTAKEDENRNKNRYGNIISYDH 61
Query: 648 SRVILSTVDGIPGRDGF-IDFIGQVHKTKEQFGQDGPI 684
SRV L +DG P D ++I H+ + GP+
Sbjct: 62 SRVRLLVLDGDPHSDYINANYIDGYHRPRHYIATQGPM 99
Score = 70.5 bits (171), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 52/87 (59%), Gaps = 7/87 (8%)
Query: 663 GFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVIDLFQTVRI 722
G + F+ QV + GPI VHCSAG GRTG FI + +L+ + EGV+D+F VR
Sbjct: 196 GLLGFVRQVKFLNPP--EAGPIVVHCSAGAGRTGCFIAIDTMLDMAENEGVVDIFNCVRE 253
Query: 723 LRTQRPAMVQTESIEPGQQFTWDHSSM 749
LR QR +VQTE +Q+ + H ++
Sbjct: 254 LRAQRVNLVQTE-----EQYVFVHDAI 275
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/21 (80%), Positives = 19/21 (90%)
Query: 1729 GPLIVHCSAGVGRTGCFIVID 1749
GP++VHCSAG GRTGCFI ID
Sbjct: 213 GPIVVHCSAGAGRTGCFIAID 233
>pdb|1RPM|A Chain A, Human Receptor Protein Tyrosine Phosphatase Mu, Domain 1
pdb|1RPM|B Chain B, Human Receptor Protein Tyrosine Phosphatase Mu, Domain 1
Length = 278
Score = 304 bits (778), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 149/290 (51%), Positives = 190/290 (65%), Gaps = 12/290 (4%)
Query: 197 PIPISRLAQHIENLKANDNLKFSQEYESIEPGQQFTWDHSSMEMNKAKNRYANVIAYDHS 256
I ++ L QHI +K + F +EYES GQ WD + + N+ KNRY N+IAYDHS
Sbjct: 1 AIRVADLLQHITQMKCAEGYGFKEEYESFFEGQSAPWDSAKKDENRMKNRYGNIIAYDHS 60
Query: 257 RVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMT 316
RV L T++G SDYIN NY DGY + N Y+ATQGP+QET+ DFWRMVW + +I+M+T
Sbjct: 61 RVRLQTIEGDTNSDYINGNYIDGYHRPNHYIATQGPMQETIYDFWRMVWHENTASIIMVT 120
Query: 317 KLEERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYCIRTFMINKGADSERREIKQLQ 376
L E R+KC +YWP TE Y I VTL + + LA Y IRTF + K E REI+Q
Sbjct: 121 NLVEVGRVKCCKYWPD-DTEIYKDIKVTLIETELLAEYVIRTFAVEKRGVHEIREIRQFH 179
Query: 377 FTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFI 436
FT WPDHGVP H L F+R+V++ +P + GPL+VHCSAG GRTGCFI
Sbjct: 180 FTGWPDHGVPYHATGLLGFVRQVKSKSPPS-----------AGPLVVHCSAGAGRTGCFI 228
Query: 437 VIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLEAVL 486
VID M++ + + VDIY V LR++R MVQTE+QY+FIHDA+LEA L
Sbjct: 229 VIDIMLDMAEREGVVDIYNCVRELRSRRVNMVQTEEQYVFIHDAILEACL 278
Score = 285 bits (729), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 140/266 (52%), Positives = 177/266 (66%), Gaps = 12/266 (4%)
Query: 732 QTESIEPGQQFTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGY 791
+ ES GQ WD + + N+ KNRY N+IAYDHSRV L T++G SDYIN NY DGY
Sbjct: 25 EYESFFEGQSAPWDSAKKDENRMKNRYGNIIAYDHSRVRLQTIEGDTNSDYINGNYIDGY 84
Query: 792 RKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGH 851
+ N Y+ATQGP+QET+ DFWRMVW + +I+M+T L E R+KC +YWP TE Y
Sbjct: 85 HRPNHYIATQGPMQETIYDFWRMVWHENTASIIMVTNLVEVGRVKCCKYWPD-DTEIYKD 143
Query: 852 ITVTLQDVQELASYCIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVR 911
I VTL + + LA Y IRTF + K E REI+Q FT WPDHGVP H L F+R+V+
Sbjct: 144 IKVTLIETELLAEYVIRTFAVEKRGVHEIREIRQFHFTGWPDHGVPYHATGLLGFVRQVK 203
Query: 912 AMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCL 971
+ +P + GPL+VHCSAG GRTGCFIVID M++ + + VDIY V L
Sbjct: 204 SKSPPS-----------AGPLVVHCSAGAGRTGCFIVIDIMLDMAEREGVVDIYNCVREL 252
Query: 972 RAQRNYMVQTEDQYMFIHDALLEAVL 997
R++R MVQTE+QY+FIHDA+LEA L
Sbjct: 253 RSRRVNMVQTEEQYVFIHDAILEACL 278
Score = 119 bits (299), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/220 (33%), Positives = 105/220 (47%), Gaps = 33/220 (15%)
Query: 1276 RLVHILPVESSRVCLTPVRGKTEFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESS 1335
R+ +L + C K E++ ++ P + SA N+ KNR +I+ + S
Sbjct: 3 RVADLLQHITQMKCAEGYGFKEEYESFFEGQSAP--WDSAKKDENRMKNRYGNIIAYDHS 60
Query: 1336 RVCLTPVRGIEGSDYINASFIDGYRLRSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLT 1395
RV L + G SDYIN ++IDGY + YIATQGP+ +T DFWRM+W N+ ++M+T
Sbjct: 61 RVRLQTIEGDTNSDYINGNYIDGYHRPNHYIATQGPMQETIYDFWRMVWHENTASIIMVT 120
Query: 1396 KLKEMGR-----------------------------YVLREFKVTDARDATSRTLRQFQL 1426
L E+GR YV+R F V R +RQF
Sbjct: 121 NLVEVGRVKCCKYWPDDTEIYKDIKVTLIETELLAEYVIRTFAVEKRGVHEIREIRQFHF 180
Query: 1427 IDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCS 1466
WP+ GVP G + F+ QV K+K GP+ VHCS
Sbjct: 181 TGWPDHGVPYHATGLLGFVRQV-KSKSP-PSAGPLVVHCS 218
Score = 113 bits (282), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 87/154 (56%), Gaps = 3/154 (1%)
Query: 1493 VLIAYLVLFSQEKCHQYWPSERSIRYEWFVVEPIAEYNMPQYVLREFKVTDARDATSRTL 1552
+++ LV + KC +YWP + I Y+ V I + +YV+R F V R +
Sbjct: 117 IMVTNLVEVGRVKCCKYWPDDTEI-YKDIKVTLIETELLAEYVIRTFAVEKRGVHEIREI 175
Query: 1553 RQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIV 1612
RQF WP+ GVP G + F+ QV K+K GP+ VHCSAG GRTG FI + I+
Sbjct: 176 RQFHFTGWPDHGVPYHATGLLGFVRQV-KSKSP-PSAGPLVVHCSAGAGRTGCFIVIDIM 233
Query: 1613 LERMQYEGVIDLFQTVRILRTQRPAMVQTEHLYT 1646
L+ + EGV+D++ VR LR++R MVQTE Y
Sbjct: 234 LDMAEREGVVDIYNCVRELRSRRVNMVQTEEQYV 267
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 53/98 (54%), Gaps = 3/98 (3%)
Query: 589 TVHCSRLAQHIENLKANDNLKFSQEYESIEPGQQFTWDHSSMEMNKAKNRYANVIAYDHS 648
+ + L QHI +K + F +EYES GQ WD + + N+ KNRY N+IAYDHS
Sbjct: 1 AIRVADLLQHITQMKCAEGYGFKEEYESFFEGQSAPWDSAKKDENRMKNRYGNIIAYDHS 60
Query: 649 RVILSTVDGIPGRDGFI--DFIGQVHKTKEQFGQDGPI 684
RV L T++G D +I ++I H+ GP+
Sbjct: 61 RVRLQTIEGDTNSD-YINGNYIDGYHRPNHYIATQGPM 97
Score = 70.9 bits (172), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 56/87 (64%), Gaps = 7/87 (8%)
Query: 663 GFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVIDLFQTVRI 722
G + F+ QV K+K GP+ VHCSAG GRTG FI + I+L+ + EGV+D++ VR
Sbjct: 194 GLLGFVRQV-KSKSP-PSAGPLVVHCSAGAGRTGCFIVIDIMLDMAEREGVVDIYNCVRE 251
Query: 723 LRTQRPAMVQTESIEPGQQFTWDHSSM 749
LR++R MVQTE +Q+ + H ++
Sbjct: 252 LRSRRVNMVQTE-----EQYVFIHDAI 273
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/21 (90%), Positives = 20/21 (95%)
Query: 1729 GPLIVHCSAGVGRTGCFIVID 1749
GPL+VHCSAG GRTGCFIVID
Sbjct: 211 GPLVVHCSAGAGRTGCFIVID 231
>pdb|1YFO|A Chain A, Receptor Protein Tyrosine Phosphatase Alpha, Domain 1 From
Mouse
pdb|1YFO|B Chain B, Receptor Protein Tyrosine Phosphatase Alpha, Domain 1 From
Mouse
Length = 302
Score = 295 bits (756), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 142/304 (46%), Positives = 201/304 (66%), Gaps = 16/304 (5%)
Query: 194 SHPPIPISRLAQHIENLKANDNLKFSQEYESIEPGQ-QFTWDHSSMEMNKAKNRYANVIA 252
+PP+P+ +L + I A+DN F +E+ ++ Q T + +S E NK KNRY N++
Sbjct: 7 KYPPLPVDKLEEEINRRMADDNKLFREEFNALPACPIQATCEAASKEENKEKNRYVNILP 66
Query: 253 YDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTI 312
YDHSRV L+ V+G+P SDYINA++ +GY++ N ++A QGP +ET+ DFWRM+WE + TI
Sbjct: 67 YDHSRVHLTPVEGVPDSDYINASFINGYQEKNKFIAAQGPKEETVNDFWRMIWEQNTATI 126
Query: 313 VMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYCIRTFMINKGADSERRE- 371
VM+T L+ER KC QYWP +G TYG++ V+++DV L Y +R F I + D R+
Sbjct: 127 VMVTNLKERKECKCAQYWPDQGCWTYGNVRVSVEDVTVLVDYTVRKFCIQQVGDVTNRKP 186
Query: 372 ---IKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAG 428
I Q FT+WPD GVP P L FL++V+A NP G ++VHCSAG
Sbjct: 187 QRLITQFHFTSWPDFGVPFTPIGMLKFLKKVKACNPQY-----------AGAIVVHCSAG 235
Query: 429 VGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLEAVLCG 488
VGRTG F+VIDAM++ + ++ VD+YG V+ +RAQR MVQT+ QY+FI+ ALLE L G
Sbjct: 236 VGRTGTFVVIDAMLDMMHSERKVDVYGFVSRIRAQRCQMVQTDMQYVFIYQALLEHYLYG 295
Query: 489 NTEI 492
+TE+
Sbjct: 296 DTEL 299
Score = 276 bits (707), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 132/270 (48%), Positives = 182/270 (67%), Gaps = 15/270 (5%)
Query: 741 QFTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVAT 800
Q T + +S E NK KNRY N++ YDHSRV L+ V+G+P SDYINA++ +GY++ N ++A
Sbjct: 44 QATCEAASKEENKEKNRYVNILPYDHSRVHLTPVEGVPDSDYINASFINGYQEKNKFIAA 103
Query: 801 QGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDVQ 860
QGP +ET+ DFWRM+WE + TIVM+T L+ER KC QYWP +G TYG++ V+++DV
Sbjct: 104 QGPKEETVNDFWRMIWEQNTATIVMVTNLKERKECKCAQYWPDQGCWTYGNVRVSVEDVT 163
Query: 861 ELASYCIRTFMINKGADSERRE----IKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPG 916
L Y +R F I + D R+ I Q FT+WPD GVP P L FL++V+A NP
Sbjct: 164 VLVDYTVRKFCIQQVGDVTNRKPQRLITQFHFTSWPDFGVPFTPIGMLKFLKKVKACNPQ 223
Query: 917 TNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRN 976
G ++VHCSAGVGRTG F+VIDAM++ + ++ VD+YG V+ +RAQR
Sbjct: 224 Y-----------AGAIVVHCSAGVGRTGTFVVIDAMLDMMHSERKVDVYGFVSRIRAQRC 272
Query: 977 YMVQTEDQYMFIHDALLEAVLCGNTEIPAS 1006
MVQT+ QY+FI+ ALLE L G+TE+ +
Sbjct: 273 QMVQTDMQYVFIYQALLEHYLYGDTELEVT 302
Score = 133 bits (334), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 73/187 (39%), Positives = 99/187 (52%), Gaps = 36/187 (19%)
Query: 1314 SASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFIDGYRLRSAYIATQGPLA 1373
+AS NK KNR V+ILP + SRV LTPV G+ SDYINASFI+GY+ ++ +IA QGP
Sbjct: 49 AASKEENKEKNRYVNILPYDHSRVHLTPVEGVPDSDYINASFINGYQEKNKFIAAQGPKE 108
Query: 1374 DTTEDFWRMLWEHNSTIVVMLTKLKE------------------------------MGRY 1403
+T DFWRM+WE N+ +VM+T LKE + Y
Sbjct: 109 ETVNDFWRMIWEQNTATIVMVTNLKERKECKCAQYWPDQGCWTYGNVRVSVEDVTVLVDY 168
Query: 1404 VLREFKVTDARDATSRT----LRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDG 1459
+R+F + D T+R + QF WP+ GVP + G + F+ +V Q+ G
Sbjct: 169 TVRKFCIQQVGDVTNRKPQRLITQFHFTSWPDFGVPFTPIGMLKFLKKVKACNPQYA--G 226
Query: 1460 PITVHCS 1466
I VHCS
Sbjct: 227 AIVVHCS 233
Score = 94.7 bits (234), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 79/157 (50%), Gaps = 6/157 (3%)
Query: 1493 VLIAYLVLFSQEKCHQYWPSERSIRYEWFVVEPIAEYNMPQYVLREFKVTDARDATSRT- 1551
V++ L + KC QYWP + Y V + Y +R+F + D T+R
Sbjct: 127 VMVTNLKERKECKCAQYWPDQGCWTYGNVRVSVEDVTVLVDYTVRKFCIQQVGDVTNRKP 186
Query: 1552 ---LRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFIT 1608
+ QF WP+ GVP + G + F+ +V Q+ G I VHCSAGVGRTG F+
Sbjct: 187 QRLITQFHFTSWPDFGVPFTPIGMLKFLKKVKACNPQYA--GAIVVHCSAGVGRTGTFVV 244
Query: 1609 LSIVLERMQYEGVIDLFQTVRILRTQRPAMVQTEHLY 1645
+ +L+ M E +D++ V +R QR MVQT+ Y
Sbjct: 245 IDAMLDMMHSERKVDVYGFVSRIRAQRCQMVQTDMQY 281
Score = 75.5 bits (184), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 100/239 (41%), Gaps = 48/239 (20%)
Query: 535 SASLPCNKHKNRLVHILPVESSRVCLTPVRGDGFIDFIGQV----HKTKEQF-GQDGP-- 587
+AS NK KNR V+ILP + SRV LTPV G D+I ++ K +F GP
Sbjct: 49 AASKEENKEKNRYVNILPYDHSRVHLTPVEGVPDSDYINASFINGYQEKNKFIAAQGPKE 108
Query: 588 ---------ITVHCSRLAQHIENLKANDNLKFSQEYESIEPGQQFTWDHSSMEMNKAKNR 638
I + + NLK K +Q + Q W + ++ + +
Sbjct: 109 ETVNDFWRMIWEQNTATIVMVTNLKERKECKCAQYWPD-----QGCWTYGNVRV--SVED 161
Query: 639 YANVIAYDHSRVILSTVDGIPGRD-----------------------GFIDFIGQVHKTK 675
++ Y + + V + R G + F+ +V
Sbjct: 162 VTVLVDYTVRKFCIQQVGDVTNRKPQRLITQFHFTSWPDFGVPFTPIGMLKFLKKVKACN 221
Query: 676 EQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVIDLFQTVRILRTQRPAMVQTE 734
Q+ G I VHCSAGVGRTG F+ + +L+ M E +D++ V +R QR MVQT+
Sbjct: 222 PQYA--GAIVVHCSAGVGRTGTFVVIDAMLDMMHSERKVDVYGFVSRIRAQRCQMVQTD 278
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 4/93 (4%)
Query: 594 RLAQHIENLKANDNLKFSQEYESIEPGQ-QFTWDHSSMEMNKAKNRYANVIAYDHSRVIL 652
+L + I A+DN F +E+ ++ Q T + +S E NK KNRY N++ YDHSRV L
Sbjct: 15 KLEEEINRRMADDNKLFREEFNALPACPIQATCEAASKEENKEKNRYVNILPYDHSRVHL 74
Query: 653 STVDGIPGRDGFID--FIGQVHKTKEQFGQDGP 683
+ V+G+P D +I+ FI + + GP
Sbjct: 75 TPVEGVPDSD-YINASFINGYQEKNKFIAAQGP 106
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/22 (77%), Positives = 20/22 (90%)
Query: 1729 GPLIVHCSAGVGRTGCFIVIDA 1750
G ++VHCSAGVGRTG F+VIDA
Sbjct: 226 GAIVVHCSAGVGRTGTFVVIDA 247
>pdb|3QCL|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
2-[(3,4-Dichlorobenzyl)sulfanyl]-4-(4-Hydroxybut-1-Yn-1-
Yl)benzoic Acid
pdb|3QCN|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, Trigonal Crystal Form
Length = 310
Score = 293 bits (751), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 153/319 (47%), Positives = 200/319 (62%), Gaps = 31/319 (9%)
Query: 192 MVSHPPIPISRLAQHIENLKANDNLKFSQEYESIE---PGQQFTWDHSSMEMNKAKNRYA 248
M S IP+ + +HI L +N+ FS+++E ++ T +HS+ NK KNRY
Sbjct: 4 MGSMEAIPVKQFVKHIGELYSNNQHGFSEDFEEVQRSTADMNITAEHSNHPENKHKNRYI 63
Query: 249 NVIAYDHSRVILSTVDGIPG--SDYINANYCDGYRKHNAYVATQGPLQETLGDFWRMVWE 306
N++AYDHSRV L + G SDYINANY DGY K AY+ATQGPL+ T DFWRM+WE
Sbjct: 64 NILAYDHSRVKLRPLPGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWE 123
Query: 307 LRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYCIRTFMIN---- 362
+ IVM+T L E+ R KCDQYWP+ TE YG+I VTL+ + A Y +R F I
Sbjct: 124 QNTGIIVMITNLVEKGRRKCDQYWPTENTEEYGNIIVTLKSTKIHACYTVRRFSIRNTKV 183
Query: 363 --------KGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 414
KG +ER I Q +T WPD GVPE+ P L F+RR SS
Sbjct: 184 KKGQKGNPKGRQNERVVI-QYHYTQWPDMGVPEYALPVLTFVRR------------SSAA 230
Query: 415 NLP-VGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQ 473
+P GP++VHCSAGVGRTG +IVID+M+++IK TV++ G + +R QRNY+VQTE+Q
Sbjct: 231 RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQ 290
Query: 474 YMFIHDALLEAVLCGNTEI 492
Y+FIHDALLEA+L TE+
Sbjct: 291 YIFIHDALLEAILGKETEV 309
Score = 276 bits (705), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 142/277 (51%), Positives = 179/277 (64%), Gaps = 28/277 (10%)
Query: 742 FTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVDGIPG--SDYINANYCDGYRKHNAYVA 799
T +HS+ NK KNRY N++AYDHSRV L + G SDYINANY DGY K AY+A
Sbjct: 46 ITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVDGYNKAKAYIA 105
Query: 800 TQGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDV 859
TQGPL+ T DFWRM+WE + IVM+T L E+ R KCDQYWP+ TE YG+I VTL+
Sbjct: 106 TQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENTEEYGNIIVTLKST 165
Query: 860 QELASYCIRTFMIN------------KGADSERREIKQLQFTAWPDHGVPEHPAPFLLFL 907
+ A Y +R F I KG +ER I Q +T WPD GVPE+ P L F+
Sbjct: 166 KIHACYTVRRFSIRNTKVKKGQKGNPKGRQNERVVI-QYHYTQWPDMGVPEYALPVLTFV 224
Query: 908 RRVRAMNPGTNSLESSGVNLP-VGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYG 966
RR SS +P GP++VHCSAGVGRTG +IVID+M+++IK TV++ G
Sbjct: 225 RR------------SSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLG 272
Query: 967 HVTCLRAQRNYMVQTEDQYMFIHDALLEAVLCGNTEI 1003
+ +R QRNY+VQTE+QY+FIHDALLEA+L TE+
Sbjct: 273 FLKHIRTQRNYLVQTEEQYIFIHDALLEAILGKETEV 309
Score = 122 bits (305), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 100/206 (48%), Gaps = 50/206 (24%)
Query: 1304 NIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLTPVRGIEG--SDYINASFIDGYRL 1361
NI AE S P NKHKNR ++IL + SRV L P+ G + SDYINA+++DGY
Sbjct: 45 NITAEHSNH-----PENKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVDGYNK 99
Query: 1362 RSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------------- 1402
AYIATQGPL T EDFWRM+WE N+ I+VM+T L E GR
Sbjct: 100 AKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENTEEYGNII 159
Query: 1403 -----------YVLREFKVTDAR-----------DATSRTLRQFQLIDWPEQGVPKSGDG 1440
Y +R F + + + R + Q+ WP+ GVP+
Sbjct: 160 VTLKSTKIHACYTVRRFSIRNTKVKKGQKGNPKGRQNERVVIQYHYTQWPDMGVPEYALP 219
Query: 1441 FIDFIGQVHKTKEQFGQDGPITVHCS 1466
+ F+ + + + + GP+ VHCS
Sbjct: 220 VLTFVRR--SSAARMPETGPVLVHCS 243
Score = 90.1 bits (222), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 87/164 (53%), Gaps = 13/164 (7%)
Query: 1493 VLIAYLVLFSQEKCHQYWPSERSIRYEWFVV-----EPIAEYNMPQYVLREFKVTDARDA 1547
V+I LV + KC QYWP+E + Y +V + A Y + ++ +R KV +
Sbjct: 130 VMITNLVEKGRRKCDQYWPTENTEEYGNIIVTLKSTKIHACYTVRRFSIRNTKVKKGQKG 189
Query: 1548 T------SRTLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVG 1601
R + Q+ WP+ GVP+ + F+ + + + + GP+ VHCSAGVG
Sbjct: 190 NPKGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRR--SSAARMPETGPVLVHCSAGVG 247
Query: 1602 RTGVFITLSIVLERMQYEGVIDLFQTVRILRTQRPAMVQTEHLY 1645
RTG +I + +L++++ + +++ ++ +RTQR +VQTE Y
Sbjct: 248 RTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQY 291
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 47/70 (67%), Gaps = 5/70 (7%)
Query: 680 QDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVIDLFQTVRILRTQRPAMVQTESIEPG 739
+ GP+ VHCSAGVGRTG +I + +L++++ + +++ ++ +RTQR +VQTE
Sbjct: 234 ETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTE----- 288
Query: 740 QQFTWDHSSM 749
+Q+ + H ++
Sbjct: 289 EQYIFIHDAL 298
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 12/102 (11%)
Query: 592 CSRLAQHIENLKANDNLKFSQEYESIE---PGQQFTWDHSSMEMNKAKNRYANVIAYDHS 648
+ +HI L +N+ FS+++E ++ T +HS+ NK KNRY N++AYDHS
Sbjct: 12 VKQFVKHIGELYSNNQHGFSEDFEEVQRSTADMNITAEHSNHPENKHKNRYINILAYDHS 71
Query: 649 RVILSTVDGIPGRDG----FI--DFIGQVHKTKEQFGQDGPI 684
RV L +PG+D +I +++ +K K GP+
Sbjct: 72 RVKLRP---LPGKDSKHSDYINANYVDGYNKAKAYIATQGPL 110
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 37/62 (59%), Gaps = 6/62 (9%)
Query: 1710 VLLFILKSSLESSGVNLP-VGPLIVHCSAGVGRTGCFIVIDAKEQYQFCYHAALEYLGSF 1768
VL F+ +SS +P GP++VHCSAGVGRTG +IVID+ Q Q + + LG
Sbjct: 220 VLTFVRRSS----AARMPETGPVLVHCSAGVGRTGTYIVIDSMLQ-QIKDKSTVNVLGFL 274
Query: 1769 DH 1770
H
Sbjct: 275 KH 276
Score = 38.9 bits (89), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 50/110 (45%), Gaps = 22/110 (20%)
Query: 492 IPARSLHVHIQKLMSMEVGDTSTGMELEFKKLS------NIRAEPSRFISASLPCNKHKN 545
IP + HI +L S + G +F+++ NI AE S P NKHKN
Sbjct: 10 IPVKQFVKHIGELYS----NNQHGFSEDFEEVQRSTADMNITAEHSNH-----PENKHKN 60
Query: 546 RLVHILPVESSRVCLTPVRG-----DGFI--DFIGQVHKTKEQFGQDGPI 588
R ++IL + SRV L P+ G +I +++ +K K GP+
Sbjct: 61 RYINILAYDHSRVKLRPLPGKDSKHSDYINANYVDGYNKAKAYIATQGPL 110
>pdb|3QCM|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
2-[(3,4-Dichlorobenzyl)sulfanyl]-4-{[3-({n-[2-
(Methylamino)ethyl]glycyl}amino)phenyl]ethynyl}benzoic
Acid
pdb|3QCM|B Chain B, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
2-[(3,4-Dichlorobenzyl)sulfanyl]-4-{[3-({n-[2-
(Methylamino)ethyl]glycyl}amino)phenyl]ethynyl}benzoic
Acid
Length = 310
Score = 292 bits (748), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 152/319 (47%), Positives = 200/319 (62%), Gaps = 31/319 (9%)
Query: 192 MVSHPPIPISRLAQHIENLKANDNLKFSQEYESIE---PGQQFTWDHSSMEMNKAKNRYA 248
M S IP+ + +HI L +N+ FS+++E ++ T +HS+ NK KNRY
Sbjct: 4 MGSMEAIPVKQFVKHIGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYI 63
Query: 249 NVIAYDHSRVILSTVDGIPG--SDYINANYCDGYRKHNAYVATQGPLQETLGDFWRMVWE 306
N++AYDHSRV L + G SDYINANY DGY K AY+ATQGPL+ T DFWRM+WE
Sbjct: 64 NILAYDHSRVKLRPLPGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWE 123
Query: 307 LRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYCIRTFMIN---- 362
+ I+M+T L E+ R KCDQYWP+ TE YG+I VTL+ + A Y +R F I
Sbjct: 124 QNTGIIIMITNLVEKGRRKCDQYWPTENTEEYGNIIVTLKSTKIHACYTVRRFSIRNTKV 183
Query: 363 --------KGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 414
KG +ER I Q +T WPD GVPE+ P L F+RR SS
Sbjct: 184 KKGQKGNPKGRQNERVVI-QYHYTQWPDMGVPEYALPVLTFVRR------------SSAA 230
Query: 415 NLP-VGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQ 473
+P GP++VHCSAGVGRTG +IVID+M+++IK TV++ G + +R QRNY+VQTE+Q
Sbjct: 231 RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQ 290
Query: 474 YMFIHDALLEAVLCGNTEI 492
Y+FIHDALLEA+L TE+
Sbjct: 291 YIFIHDALLEAILGKETEV 309
Score = 275 bits (702), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 141/277 (50%), Positives = 179/277 (64%), Gaps = 28/277 (10%)
Query: 742 FTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVDGIPG--SDYINANYCDGYRKHNAYVA 799
T +HS+ NK KNRY N++AYDHSRV L + G SDYINANY DGY K AY+A
Sbjct: 46 ITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVDGYNKAKAYIA 105
Query: 800 TQGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDV 859
TQGPL+ T DFWRM+WE + I+M+T L E+ R KCDQYWP+ TE YG+I VTL+
Sbjct: 106 TQGPLKSTFEDFWRMIWEQNTGIIIMITNLVEKGRRKCDQYWPTENTEEYGNIIVTLKST 165
Query: 860 QELASYCIRTFMIN------------KGADSERREIKQLQFTAWPDHGVPEHPAPFLLFL 907
+ A Y +R F I KG +ER I Q +T WPD GVPE+ P L F+
Sbjct: 166 KIHACYTVRRFSIRNTKVKKGQKGNPKGRQNERVVI-QYHYTQWPDMGVPEYALPVLTFV 224
Query: 908 RRVRAMNPGTNSLESSGVNLP-VGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYG 966
RR SS +P GP++VHCSAGVGRTG +IVID+M+++IK TV++ G
Sbjct: 225 RR------------SSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLG 272
Query: 967 HVTCLRAQRNYMVQTEDQYMFIHDALLEAVLCGNTEI 1003
+ +R QRNY+VQTE+QY+FIHDALLEA+L TE+
Sbjct: 273 FLKHIRTQRNYLVQTEEQYIFIHDALLEAILGKETEV 309
Score = 121 bits (303), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 72/206 (34%), Positives = 100/206 (48%), Gaps = 50/206 (24%)
Query: 1304 NIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLTPVRGIEG--SDYINASFIDGYRL 1361
NI AE S P NKHKNR ++IL + SRV L P+ G + SDYINA+++DGY
Sbjct: 45 NITAEHSNH-----PENKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVDGYNK 99
Query: 1362 RSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------------- 1402
AYIATQGPL T EDFWRM+WE N+ I++M+T L E GR
Sbjct: 100 AKAYIATQGPLKSTFEDFWRMIWEQNTGIIIMITNLVEKGRRKCDQYWPTENTEEYGNII 159
Query: 1403 -----------YVLREFKVTDAR-----------DATSRTLRQFQLIDWPEQGVPKSGDG 1440
Y +R F + + + R + Q+ WP+ GVP+
Sbjct: 160 VTLKSTKIHACYTVRRFSIRNTKVKKGQKGNPKGRQNERVVIQYHYTQWPDMGVPEYALP 219
Query: 1441 FIDFIGQVHKTKEQFGQDGPITVHCS 1466
+ F+ + + + + GP+ VHCS
Sbjct: 220 VLTFVRR--SSAARMPETGPVLVHCS 243
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 87/164 (53%), Gaps = 13/164 (7%)
Query: 1493 VLIAYLVLFSQEKCHQYWPSERSIRYEWFVV-----EPIAEYNMPQYVLREFKVTDARDA 1547
++I LV + KC QYWP+E + Y +V + A Y + ++ +R KV +
Sbjct: 130 IMITNLVEKGRRKCDQYWPTENTEEYGNIIVTLKSTKIHACYTVRRFSIRNTKVKKGQKG 189
Query: 1548 T------SRTLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVG 1601
R + Q+ WP+ GVP+ + F+ + + + + GP+ VHCSAGVG
Sbjct: 190 NPKGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRR--SSAARMPETGPVLVHCSAGVG 247
Query: 1602 RTGVFITLSIVLERMQYEGVIDLFQTVRILRTQRPAMVQTEHLY 1645
RTG +I + +L++++ + +++ ++ +RTQR +VQTE Y
Sbjct: 248 RTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQY 291
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 47/70 (67%), Gaps = 5/70 (7%)
Query: 680 QDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVIDLFQTVRILRTQRPAMVQTESIEPG 739
+ GP+ VHCSAGVGRTG +I + +L++++ + +++ ++ +RTQR +VQTE
Sbjct: 234 ETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTE----- 288
Query: 740 QQFTWDHSSM 749
+Q+ + H ++
Sbjct: 289 EQYIFIHDAL 298
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 12/100 (12%)
Query: 594 RLAQHIENLKANDNLKFSQEYESIE---PGQQFTWDHSSMEMNKAKNRYANVIAYDHSRV 650
+ +HI L +N+ FS+++E ++ T +HS+ NK KNRY N++AYDHSRV
Sbjct: 14 QFVKHIGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRV 73
Query: 651 ILSTVDGIPGRDG----FI--DFIGQVHKTKEQFGQDGPI 684
L +PG+D +I +++ +K K GP+
Sbjct: 74 KLRP---LPGKDSKHSDYINANYVDGYNKAKAYIATQGPL 110
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 37/62 (59%), Gaps = 6/62 (9%)
Query: 1710 VLLFILKSSLESSGVNLP-VGPLIVHCSAGVGRTGCFIVIDAKEQYQFCYHAALEYLGSF 1768
VL F+ +SS +P GP++VHCSAGVGRTG +IVID+ Q Q + + LG
Sbjct: 220 VLTFVRRSS----AARMPETGPVLVHCSAGVGRTGTYIVIDSMLQ-QIKDKSTVNVLGFL 274
Query: 1769 DH 1770
H
Sbjct: 275 KH 276
Score = 38.5 bits (88), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 50/110 (45%), Gaps = 22/110 (20%)
Query: 492 IPARSLHVHIQKLMSMEVGDTSTGMELEFKKLS------NIRAEPSRFISASLPCNKHKN 545
IP + HI +L S + G +F+++ NI AE S P NKHKN
Sbjct: 10 IPVKQFVKHIGELYS----NNQHGFSEDFEEVQRCTADMNITAEHSNH-----PENKHKN 60
Query: 546 RLVHILPVESSRVCLTPVRG-----DGFI--DFIGQVHKTKEQFGQDGPI 588
R ++IL + SRV L P+ G +I +++ +K K GP+
Sbjct: 61 RYINILAYDHSRVKLRPLPGKDSKHSDYINANYVDGYNKAKAYIATQGPL 110
>pdb|3QCB|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, Apo
pdb|3QCB|B Chain B, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, Apo
pdb|3QCC|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With Vanadate, Orthorhombic Crystal Form
pdb|3QCC|B Chain B, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With Vanadate, Orthorhombic Crystal Form
pdb|3QCD|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With Vanadate, Trigonal Crystal Form
pdb|3QCE|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3,4-Dichlorobenzyl)sulfanyl]thiophene-2-Carboxylic
Acid Via Soaking
pdb|3QCE|B Chain B, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3,4-Dichlorobenzyl)sulfanyl]thiophene-2-Carboxylic
Acid Via Soaking
pdb|3QCF|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3,4-Dichlorobenzyl)sulfanyl]thiophene-2-Carboxylic
Acid Via Co-Crystallization
pdb|3QCF|B Chain B, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3,4-Dichlorobenzyl)sulfanyl]thiophene-2-Carboxylic
Acid Via Co-Crystallization
pdb|3QCG|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3-Bromo-4-Chlorobenzyl)sulfanyl]thiophene-2-
Carboxylic Acid
pdb|3QCH|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3,4-Dichlorobenzyl)sulfanyl]-N-(Methylsulfonyl)
Thiophene-2-Carboxamide
pdb|3QCI|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
N-[(3-Aminophenyl)sulfonyl]-3-[(3,4-Dichlorobenzyl)
Sulfanyl]thiophene-2-Carboxamide
pdb|3QCJ|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
5-[({3-[(3,4-Dichlorobenzyl)sulfanyl]thiophen-2-
Yl}carbonyl)sulfamoyl]-2-Methoxybenzoic Acid
pdb|3QCK|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
2-[(3,4-Dichlorobenzyl)sulfanyl]benzoic Acid
Length = 310
Score = 291 bits (745), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 152/319 (47%), Positives = 200/319 (62%), Gaps = 31/319 (9%)
Query: 192 MVSHPPIPISRLAQHIENLKANDNLKFSQEYESIE---PGQQFTWDHSSMEMNKAKNRYA 248
M S IP+ + +HI L +N+ FS+++E ++ T +HS+ NK KNRY
Sbjct: 4 MGSMEAIPVKQFVKHIGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYI 63
Query: 249 NVIAYDHSRVILSTVDGIPG--SDYINANYCDGYRKHNAYVATQGPLQETLGDFWRMVWE 306
N++AYDHSRV L + G SDYINANY DGY K AY+ATQGPL+ T DFWRM+WE
Sbjct: 64 NILAYDHSRVKLRPLPGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWE 123
Query: 307 LRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYCIRTFMIN---- 362
+ IVM+T L E+ R KCDQYWP+ +E YG+I VTL+ + A Y +R F I
Sbjct: 124 QNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTKV 183
Query: 363 --------KGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 414
KG +ER I Q +T WPD GVPE+ P L F+RR SS
Sbjct: 184 KKGQKGNPKGRQNERVVI-QYHYTQWPDMGVPEYALPVLTFVRR------------SSAA 230
Query: 415 NLP-VGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQ 473
+P GP++VHCSAGVGRTG +IVID+M+++IK TV++ G + +R QRNY+VQTE+Q
Sbjct: 231 RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQ 290
Query: 474 YMFIHDALLEAVLCGNTEI 492
Y+FIHDALLEA+L TE+
Sbjct: 291 YIFIHDALLEAILGKETEV 309
Score = 274 bits (700), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 141/277 (50%), Positives = 179/277 (64%), Gaps = 28/277 (10%)
Query: 742 FTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVDGIPG--SDYINANYCDGYRKHNAYVA 799
T +HS+ NK KNRY N++AYDHSRV L + G SDYINANY DGY K AY+A
Sbjct: 46 ITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVDGYNKAKAYIA 105
Query: 800 TQGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDV 859
TQGPL+ T DFWRM+WE + IVM+T L E+ R KCDQYWP+ +E YG+I VTL+
Sbjct: 106 TQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKST 165
Query: 860 QELASYCIRTFMIN------------KGADSERREIKQLQFTAWPDHGVPEHPAPFLLFL 907
+ A Y +R F I KG +ER I Q +T WPD GVPE+ P L F+
Sbjct: 166 KIHACYTVRRFSIRNTKVKKGQKGNPKGRQNERVVI-QYHYTQWPDMGVPEYALPVLTFV 224
Query: 908 RRVRAMNPGTNSLESSGVNLP-VGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYG 966
RR SS +P GP++VHCSAGVGRTG +IVID+M+++IK TV++ G
Sbjct: 225 RR------------SSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLG 272
Query: 967 HVTCLRAQRNYMVQTEDQYMFIHDALLEAVLCGNTEI 1003
+ +R QRNY+VQTE+QY+FIHDALLEA+L TE+
Sbjct: 273 FLKHIRTQRNYLVQTEEQYIFIHDALLEAILGKETEV 309
Score = 121 bits (304), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 100/206 (48%), Gaps = 50/206 (24%)
Query: 1304 NIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLTPVRGIEG--SDYINASFIDGYRL 1361
NI AE S P NKHKNR ++IL + SRV L P+ G + SDYINA+++DGY
Sbjct: 45 NITAEHSNH-----PENKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVDGYNK 99
Query: 1362 RSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------------- 1402
AYIATQGPL T EDFWRM+WE N+ I+VM+T L E GR
Sbjct: 100 AKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNII 159
Query: 1403 -----------YVLREFKVTDAR-----------DATSRTLRQFQLIDWPEQGVPKSGDG 1440
Y +R F + + + R + Q+ WP+ GVP+
Sbjct: 160 VTLKSTKIHACYTVRRFSIRNTKVKKGQKGNPKGRQNERVVIQYHYTQWPDMGVPEYALP 219
Query: 1441 FIDFIGQVHKTKEQFGQDGPITVHCS 1466
+ F+ + + + + GP+ VHCS
Sbjct: 220 VLTFVRR--SSAARMPETGPVLVHCS 243
Score = 91.3 bits (225), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 87/164 (53%), Gaps = 13/164 (7%)
Query: 1493 VLIAYLVLFSQEKCHQYWPSERSIRYEWFVV-----EPIAEYNMPQYVLREFKVTDARDA 1547
V+I LV + KC QYWP+E S Y +V + A Y + ++ +R KV +
Sbjct: 130 VMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTKVKKGQKG 189
Query: 1548 T------SRTLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVG 1601
R + Q+ WP+ GVP+ + F+ + + + + GP+ VHCSAGVG
Sbjct: 190 NPKGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRR--SSAARMPETGPVLVHCSAGVG 247
Query: 1602 RTGVFITLSIVLERMQYEGVIDLFQTVRILRTQRPAMVQTEHLY 1645
RTG +I + +L++++ + +++ ++ +RTQR +VQTE Y
Sbjct: 248 RTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQY 291
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 47/70 (67%), Gaps = 5/70 (7%)
Query: 680 QDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVIDLFQTVRILRTQRPAMVQTESIEPG 739
+ GP+ VHCSAGVGRTG +I + +L++++ + +++ ++ +RTQR +VQTE
Sbjct: 234 ETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTE----- 288
Query: 740 QQFTWDHSSM 749
+Q+ + H ++
Sbjct: 289 EQYIFIHDAL 298
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 12/100 (12%)
Query: 594 RLAQHIENLKANDNLKFSQEYESIE---PGQQFTWDHSSMEMNKAKNRYANVIAYDHSRV 650
+ +HI L +N+ FS+++E ++ T +HS+ NK KNRY N++AYDHSRV
Sbjct: 14 QFVKHIGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRV 73
Query: 651 ILSTVDGIPGRDG----FI--DFIGQVHKTKEQFGQDGPI 684
L +PG+D +I +++ +K K GP+
Sbjct: 74 KLRP---LPGKDSKHSDYINANYVDGYNKAKAYIATQGPL 110
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 37/62 (59%), Gaps = 6/62 (9%)
Query: 1710 VLLFILKSSLESSGVNLP-VGPLIVHCSAGVGRTGCFIVIDAKEQYQFCYHAALEYLGSF 1768
VL F+ +SS +P GP++VHCSAGVGRTG +IVID+ Q Q + + LG
Sbjct: 220 VLTFVRRSS----AARMPETGPVLVHCSAGVGRTGTYIVIDSMLQ-QIKDKSTVNVLGFL 274
Query: 1769 DH 1770
H
Sbjct: 275 KH 276
Score = 38.5 bits (88), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 50/110 (45%), Gaps = 22/110 (20%)
Query: 492 IPARSLHVHIQKLMSMEVGDTSTGMELEFKKLS------NIRAEPSRFISASLPCNKHKN 545
IP + HI +L S + G +F+++ NI AE S P NKHKN
Sbjct: 10 IPVKQFVKHIGELYS----NNQHGFSEDFEEVQRCTADMNITAEHSNH-----PENKHKN 60
Query: 546 RLVHILPVESSRVCLTPVRG-----DGFI--DFIGQVHKTKEQFGQDGPI 588
R ++IL + SRV L P+ G +I +++ +K K GP+
Sbjct: 61 RYINILAYDHSRVKLRPLPGKDSKHSDYINANYVDGYNKAKAYIATQGPL 110
>pdb|2PBN|A Chain A, Crystal Structure Of The Human Tyrosine Receptor Phosphate
Gamma
Length = 313
Score = 290 bits (743), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 150/315 (47%), Positives = 199/315 (63%), Gaps = 31/315 (9%)
Query: 198 IPISRLAQHIENLKANDNLKFSQEYESIE---PGQQFTWDHSSMEMNKAKNRYANVIAYD 254
IP+ + +HI L +N+ FS+++E ++ T +HS+ NK KNRY N++AYD
Sbjct: 11 IPVKQFVKHIGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYD 70
Query: 255 HSRVILSTVDGIPG--SDYINANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTI 312
HSRV L + G SDYINANY DGY K AY+ATQGPL+ T DFWRM+WE + I
Sbjct: 71 HSRVKLRPLPGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGII 130
Query: 313 VMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYCIRTFMIN---------- 362
VM+T L E+ R KCDQYWP+ +E YG+I VTL+ + A Y +R F I
Sbjct: 131 VMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTKVKKGQKG 190
Query: 363 --KGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLP-VG 419
KG +ER I Q +T WPD GVPE+ P L F+RR SS +P G
Sbjct: 191 NPKGRQNERVVI-QYHYTQWPDMGVPEYALPVLTFVRR------------SSAARMPETG 237
Query: 420 PLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHD 479
P++VHCSAGVGRTG +IVID+M+++IK TV++ G + +R QRNY+VQTE+QY+FIHD
Sbjct: 238 PVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHD 297
Query: 480 ALLEAVLCGNTEIPA 494
ALLEA+L TE+ +
Sbjct: 298 ALLEAILGKETEVSS 312
Score = 275 bits (702), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 141/280 (50%), Positives = 181/280 (64%), Gaps = 28/280 (10%)
Query: 742 FTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVDGIPG--SDYINANYCDGYRKHNAYVA 799
T +HS+ NK KNRY N++AYDHSRV L + G SDYINANY DGY K AY+A
Sbjct: 47 ITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVDGYNKAKAYIA 106
Query: 800 TQGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDV 859
TQGPL+ T DFWRM+WE + IVM+T L E+ R KCDQYWP+ +E YG+I VTL+
Sbjct: 107 TQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKST 166
Query: 860 QELASYCIRTFMIN------------KGADSERREIKQLQFTAWPDHGVPEHPAPFLLFL 907
+ A Y +R F I KG +ER I Q +T WPD GVPE+ P L F+
Sbjct: 167 KIHACYTVRRFSIRNTKVKKGQKGNPKGRQNERVVI-QYHYTQWPDMGVPEYALPVLTFV 225
Query: 908 RRVRAMNPGTNSLESSGVNLP-VGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYG 966
RR SS +P GP++VHCSAGVGRTG +IVID+M+++IK TV++ G
Sbjct: 226 RR------------SSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLG 273
Query: 967 HVTCLRAQRNYMVQTEDQYMFIHDALLEAVLCGNTEIPAS 1006
+ +R QRNY+VQTE+QY+FIHDALLEA+L TE+ ++
Sbjct: 274 FLKHIRTQRNYLVQTEEQYIFIHDALLEAILGKETEVSSN 313
Score = 122 bits (305), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 100/206 (48%), Gaps = 50/206 (24%)
Query: 1304 NIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLTPVRGIEG--SDYINASFIDGYRL 1361
NI AE S P NKHKNR ++IL + SRV L P+ G + SDYINA+++DGY
Sbjct: 46 NITAEHSNH-----PENKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVDGYNK 100
Query: 1362 RSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------------- 1402
AYIATQGPL T EDFWRM+WE N+ I+VM+T L E GR
Sbjct: 101 AKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNII 160
Query: 1403 -----------YVLREFKVTDAR-----------DATSRTLRQFQLIDWPEQGVPKSGDG 1440
Y +R F + + + R + Q+ WP+ GVP+
Sbjct: 161 VTLKSTKIHACYTVRRFSIRNTKVKKGQKGNPKGRQNERVVIQYHYTQWPDMGVPEYALP 220
Query: 1441 FIDFIGQVHKTKEQFGQDGPITVHCS 1466
+ F+ + + + + GP+ VHCS
Sbjct: 221 VLTFVRR--SSAARMPETGPVLVHCS 244
Score = 91.3 bits (225), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 87/164 (53%), Gaps = 13/164 (7%)
Query: 1493 VLIAYLVLFSQEKCHQYWPSERSIRYEWFVV-----EPIAEYNMPQYVLREFKVTDARDA 1547
V+I LV + KC QYWP+E S Y +V + A Y + ++ +R KV +
Sbjct: 131 VMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTKVKKGQKG 190
Query: 1548 T------SRTLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVG 1601
R + Q+ WP+ GVP+ + F+ + + + + GP+ VHCSAGVG
Sbjct: 191 NPKGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRR--SSAARMPETGPVLVHCSAGVG 248
Query: 1602 RTGVFITLSIVLERMQYEGVIDLFQTVRILRTQRPAMVQTEHLY 1645
RTG +I + +L++++ + +++ ++ +RTQR +VQTE Y
Sbjct: 249 RTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQY 292
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 47/70 (67%), Gaps = 5/70 (7%)
Query: 680 QDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVIDLFQTVRILRTQRPAMVQTESIEPG 739
+ GP+ VHCSAGVGRTG +I + +L++++ + +++ ++ +RTQR +VQTE
Sbjct: 235 ETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTE----- 289
Query: 740 QQFTWDHSSM 749
+Q+ + H ++
Sbjct: 290 EQYIFIHDAL 299
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 12/100 (12%)
Query: 594 RLAQHIENLKANDNLKFSQEYESIE---PGQQFTWDHSSMEMNKAKNRYANVIAYDHSRV 650
+ +HI L +N+ FS+++E ++ T +HS+ NK KNRY N++AYDHSRV
Sbjct: 15 QFVKHIGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRV 74
Query: 651 ILSTVDGIPGRDG----FI--DFIGQVHKTKEQFGQDGPI 684
L +PG+D +I +++ +K K GP+
Sbjct: 75 KLRP---LPGKDSKHSDYINANYVDGYNKAKAYIATQGPL 111
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 37/62 (59%), Gaps = 6/62 (9%)
Query: 1710 VLLFILKSSLESSGVNLP-VGPLIVHCSAGVGRTGCFIVIDAKEQYQFCYHAALEYLGSF 1768
VL F+ +SS +P GP++VHCSAGVGRTG +IVID+ Q Q + + LG
Sbjct: 221 VLTFVRRSS----AARMPETGPVLVHCSAGVGRTGTYIVIDSMLQ-QIKDKSTVNVLGFL 275
Query: 1769 DH 1770
H
Sbjct: 276 KH 277
Score = 38.9 bits (89), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 50/110 (45%), Gaps = 22/110 (20%)
Query: 492 IPARSLHVHIQKLMSMEVGDTSTGMELEFKKLS------NIRAEPSRFISASLPCNKHKN 545
IP + HI +L S + G +F+++ NI AE S P NKHKN
Sbjct: 11 IPVKQFVKHIGELYS----NNQHGFSEDFEEVQRCTADMNITAEHSNH-----PENKHKN 61
Query: 546 RLVHILPVESSRVCLTPVRG-----DGFI--DFIGQVHKTKEQFGQDGPI 588
R ++IL + SRV L P+ G +I +++ +K K GP+
Sbjct: 62 RYINILAYDHSRVKLRPLPGKDSKHSDYINANYVDGYNKAKAYIATQGPL 111
>pdb|2H4V|A Chain A, Crystal Structure Of The Human Tyrosine Receptor
Phosphatase Gamma
pdb|2H4V|B Chain B, Crystal Structure Of The Human Tyrosine Receptor
Phosphatase Gamma
Length = 320
Score = 285 bits (729), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 148/311 (47%), Positives = 196/311 (63%), Gaps = 31/311 (9%)
Query: 200 ISRLAQHIENLKANDNLKFSQEYESIE---PGQQFTWDHSSMEMNKAKNRYANVIAYDHS 256
+ + +HI L +N+ FS+++E ++ T +HS+ NK KNRY N++AYDHS
Sbjct: 23 MKQFVKHIGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHS 82
Query: 257 RVILSTVDGIPG--SDYINANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIVM 314
RV L + G SDYINANY DGY K AY+ATQGPL+ T DFWRM+WE + IVM
Sbjct: 83 RVKLRPLPGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVM 142
Query: 315 MTKLEERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYCIRTFMIN------------ 362
+T L E+ R KCDQYWP+ +E YG+I VTL+ + A Y +R F I
Sbjct: 143 ITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTKVKKGQKGNP 202
Query: 363 KGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLP-VGPL 421
KG +ER I Q +T WPD GVPE+ P L F+RR SS +P GP+
Sbjct: 203 KGRQNERVVI-QYHYTQWPDMGVPEYALPVLTFVRR------------SSAARMPETGPV 249
Query: 422 IVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDAL 481
+VHCSAGVGRTG +IVID+M+++IK TV++ G + +R QRNY+VQTE+QY+FIHDAL
Sbjct: 250 LVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDAL 309
Query: 482 LEAVLCGNTEI 492
LEA+L TE+
Sbjct: 310 LEAILGKETEV 320
Score = 274 bits (700), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 141/276 (51%), Positives = 179/276 (64%), Gaps = 28/276 (10%)
Query: 743 TWDHSSMEMNKAKNRYANVIAYDHSRVILSTVDGIPG--SDYINANYCDGYRKHNAYVAT 800
T +HS+ NK KNRY N++AYDHSRV L + G SDYINANY DGY K AY+AT
Sbjct: 58 TAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVDGYNKAKAYIAT 117
Query: 801 QGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDVQ 860
QGPL+ T DFWRM+WE + IVM+T L E+ R KCDQYWP+ +E YG+I VTL+ +
Sbjct: 118 QGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTK 177
Query: 861 ELASYCIRTFMIN------------KGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLR 908
A Y +R F I KG +ER I Q +T WPD GVPE+ P L F+R
Sbjct: 178 IHACYTVRRFSIRNTKVKKGQKGNPKGRQNERVVI-QYHYTQWPDMGVPEYALPVLTFVR 236
Query: 909 RVRAMNPGTNSLESSGVNLP-VGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGH 967
R SS +P GP++VHCSAGVGRTG +IVID+M+++IK TV++ G
Sbjct: 237 R------------SSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGF 284
Query: 968 VTCLRAQRNYMVQTEDQYMFIHDALLEAVLCGNTEI 1003
+ +R QRNY+VQTE+QY+FIHDALLEA+L TE+
Sbjct: 285 LKHIRTQRNYLVQTEEQYIFIHDALLEAILGKETEV 320
Score = 121 bits (304), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 100/206 (48%), Gaps = 50/206 (24%)
Query: 1304 NIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLTPVRGIEG--SDYINASFIDGYRL 1361
NI AE S P NKHKNR ++IL + SRV L P+ G + SDYINA+++DGY
Sbjct: 56 NITAEHSNH-----PENKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVDGYNK 110
Query: 1362 RSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------------- 1402
AYIATQGPL T EDFWRM+WE N+ I+VM+T L E GR
Sbjct: 111 AKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNII 170
Query: 1403 -----------YVLREFKVTDAR-----------DATSRTLRQFQLIDWPEQGVPKSGDG 1440
Y +R F + + + R + Q+ WP+ GVP+
Sbjct: 171 VTLKSTKIHACYTVRRFSIRNTKVKKGQKGNPKGRQNERVVIQYHYTQWPDMGVPEYALP 230
Query: 1441 FIDFIGQVHKTKEQFGQDGPITVHCS 1466
+ F+ + + + + GP+ VHCS
Sbjct: 231 VLTFVRR--SSAARMPETGPVLVHCS 254
Score = 90.5 bits (223), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 87/164 (53%), Gaps = 13/164 (7%)
Query: 1493 VLIAYLVLFSQEKCHQYWPSERSIRYEWFVV-----EPIAEYNMPQYVLREFKVTDARDA 1547
V+I LV + KC QYWP+E S Y +V + A Y + ++ +R KV +
Sbjct: 141 VMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTKVKKGQKG 200
Query: 1548 T------SRTLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVG 1601
R + Q+ WP+ GVP+ + F+ + + + + GP+ VHCSAGVG
Sbjct: 201 NPKGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRR--SSAARMPETGPVLVHCSAGVG 258
Query: 1602 RTGVFITLSIVLERMQYEGVIDLFQTVRILRTQRPAMVQTEHLY 1645
RTG +I + +L++++ + +++ ++ +RTQR +VQTE Y
Sbjct: 259 RTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQY 302
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 47/70 (67%), Gaps = 5/70 (7%)
Query: 680 QDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVIDLFQTVRILRTQRPAMVQTESIEPG 739
+ GP+ VHCSAGVGRTG +I + +L++++ + +++ ++ +RTQR +VQTE
Sbjct: 245 ETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTE----- 299
Query: 740 QQFTWDHSSM 749
+Q+ + H ++
Sbjct: 300 EQYIFIHDAL 309
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 12/100 (12%)
Query: 594 RLAQHIENLKANDNLKFSQEYESIE---PGQQFTWDHSSMEMNKAKNRYANVIAYDHSRV 650
+ +HI L +N+ FS+++E ++ T +HS+ NK KNRY N++AYDHSRV
Sbjct: 25 QFVKHIGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRV 84
Query: 651 ILSTVDGIPGRDG----FI--DFIGQVHKTKEQFGQDGPI 684
L +PG+D +I +++ +K K GP+
Sbjct: 85 KLRP---LPGKDSKHSDYINANYVDGYNKAKAYIATQGPL 121
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 37/62 (59%), Gaps = 6/62 (9%)
Query: 1710 VLLFILKSSLESSGVNLP-VGPLIVHCSAGVGRTGCFIVIDAKEQYQFCYHAALEYLGSF 1768
VL F+ +SS +P GP++VHCSAGVGRTG +IVID+ Q Q + + LG
Sbjct: 231 VLTFVRRSS----AARMPETGPVLVHCSAGVGRTGTYIVIDSMLQ-QIKDKSTVNVLGFL 285
Query: 1769 DH 1770
H
Sbjct: 286 KH 287
Score = 35.8 bits (81), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 12/71 (16%)
Query: 525 NIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLTPVRG-----DGFI--DFIGQVHK 577
NI AE S P NKHKNR ++IL + SRV L P+ G +I +++ +K
Sbjct: 56 NITAEHSNH-----PENKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVDGYNK 110
Query: 578 TKEQFGQDGPI 588
K GP+
Sbjct: 111 AKAYIATQGPL 121
>pdb|2HY3|A Chain A, Crystal Structure Of The Human Tyrosine Receptor Phosphate
Gamma In Complex With Vanadate
pdb|2HY3|B Chain B, Crystal Structure Of The Human Tyrosine Receptor Phosphate
Gamma In Complex With Vanadate
Length = 313
Score = 282 bits (721), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 147/315 (46%), Positives = 195/315 (61%), Gaps = 31/315 (9%)
Query: 198 IPISRLAQHIENLKANDNLKFSQEYESIE---PGQQFTWDHSSMEMNKAKNRYANVIAYD 254
IP+ + +HI L +N+ FS+++E ++ T +HS+ NK KNRY N++AYD
Sbjct: 11 IPVKQFVKHIGELYSNNQHGFSEDFEEVQRCTADXNITAEHSNHPENKHKNRYINILAYD 70
Query: 255 HSRVILSTVDGIPG--SDYINANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTI 312
HSRV L + G SDYINANY DGY K AY+ATQGPL+ T DFWR +WE + I
Sbjct: 71 HSRVKLRPLPGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRXIWEQNTGII 130
Query: 313 VMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYCIRTFMIN---------- 362
V +T L E+ R KCDQYWP+ +E YG+I VTL+ + A Y +R F I
Sbjct: 131 VXITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTKVKKGQKG 190
Query: 363 --KGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLP-VG 419
KG +ER I Q +T WPD GVPE+ P L F+RR SS P G
Sbjct: 191 NPKGRQNERVVI-QYHYTQWPDXGVPEYALPVLTFVRR------------SSAARXPETG 237
Query: 420 PLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHD 479
P++VHCSAGVGRTG +IVID+ +++IK TV++ G + +R QRNY+VQTE+QY+FIHD
Sbjct: 238 PVLVHCSAGVGRTGTYIVIDSXLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHD 297
Query: 480 ALLEAVLCGNTEIPA 494
ALLEA+L TE+ +
Sbjct: 298 ALLEAILGKETEVSS 312
Score = 266 bits (680), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 138/280 (49%), Positives = 177/280 (63%), Gaps = 28/280 (10%)
Query: 742 FTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVDGIPG--SDYINANYCDGYRKHNAYVA 799
T +HS+ NK KNRY N++AYDHSRV L + G SDYINANY DGY K AY+A
Sbjct: 47 ITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVDGYNKAKAYIA 106
Query: 800 TQGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDV 859
TQGPL+ T DFWR +WE + IV +T L E+ R KCDQYWP+ +E YG+I VTL+
Sbjct: 107 TQGPLKSTFEDFWRXIWEQNTGIIVXITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKST 166
Query: 860 QELASYCIRTFMIN------------KGADSERREIKQLQFTAWPDHGVPEHPAPFLLFL 907
+ A Y +R F I KG +ER I Q +T WPD GVPE+ P L F+
Sbjct: 167 KIHACYTVRRFSIRNTKVKKGQKGNPKGRQNERVVI-QYHYTQWPDXGVPEYALPVLTFV 225
Query: 908 RRVRAMNPGTNSLESSGVNLP-VGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYG 966
RR SS P GP++VHCSAGVGRTG +IVID+ +++IK TV++ G
Sbjct: 226 RR------------SSAARXPETGPVLVHCSAGVGRTGTYIVIDSXLQQIKDKSTVNVLG 273
Query: 967 HVTCLRAQRNYMVQTEDQYMFIHDALLEAVLCGNTEIPAS 1006
+ +R QRNY+VQTE+QY+FIHDALLEA+L TE+ ++
Sbjct: 274 FLKHIRTQRNYLVQTEEQYIFIHDALLEAILGKETEVSSN 313
Score = 115 bits (289), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 98/206 (47%), Gaps = 50/206 (24%)
Query: 1304 NIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLTPVRGIEG--SDYINASFIDGYRL 1361
NI AE S P NKHKNR ++IL + SRV L P+ G + SDYINA+++DGY
Sbjct: 46 NITAEHSNH-----PENKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVDGYNK 100
Query: 1362 RSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------------- 1402
AYIATQGPL T EDFWR +WE N+ I+V +T L E GR
Sbjct: 101 AKAYIATQGPLKSTFEDFWRXIWEQNTGIIVXITNLVEKGRRKCDQYWPTENSEEYGNII 160
Query: 1403 -----------YVLREFKVTDAR-----------DATSRTLRQFQLIDWPEQGVPKSGDG 1440
Y +R F + + + R + Q+ WP+ GVP+
Sbjct: 161 VTLKSTKIHACYTVRRFSIRNTKVKKGQKGNPKGRQNERVVIQYHYTQWPDXGVPEYALP 220
Query: 1441 FIDFIGQVHKTKEQFGQDGPITVHCS 1466
+ F+ + + + + GP+ VHCS
Sbjct: 221 VLTFVRR--SSAARXPETGPVLVHCS 244
Score = 88.6 bits (218), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 85/164 (51%), Gaps = 13/164 (7%)
Query: 1493 VLIAYLVLFSQEKCHQYWPSERSIRYEWFVV-----EPIAEYNMPQYVLREFKVTDARDA 1547
V I LV + KC QYWP+E S Y +V + A Y + ++ +R KV +
Sbjct: 131 VXITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTKVKKGQKG 190
Query: 1548 T------SRTLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVG 1601
R + Q+ WP+ GVP+ + F+ + + + + GP+ VHCSAGVG
Sbjct: 191 NPKGRQNERVVIQYHYTQWPDXGVPEYALPVLTFVRR--SSAARXPETGPVLVHCSAGVG 248
Query: 1602 RTGVFITLSIVLERMQYEGVIDLFQTVRILRTQRPAMVQTEHLY 1645
RTG +I + L++++ + +++ ++ +RTQR +VQTE Y
Sbjct: 249 RTGTYIVIDSXLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQY 292
Score = 57.4 bits (137), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 46/70 (65%), Gaps = 5/70 (7%)
Query: 680 QDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVIDLFQTVRILRTQRPAMVQTESIEPG 739
+ GP+ VHCSAGVGRTG +I + L++++ + +++ ++ +RTQR +VQTE
Sbjct: 235 ETGPVLVHCSAGVGRTGTYIVIDSXLQQIKDKSTVNVLGFLKHIRTQRNYLVQTE----- 289
Query: 740 QQFTWDHSSM 749
+Q+ + H ++
Sbjct: 290 EQYIFIHDAL 299
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 12/100 (12%)
Query: 594 RLAQHIENLKANDNLKFSQEYESIE---PGQQFTWDHSSMEMNKAKNRYANVIAYDHSRV 650
+ +HI L +N+ FS+++E ++ T +HS+ NK KNRY N++AYDHSRV
Sbjct: 15 QFVKHIGELYSNNQHGFSEDFEEVQRCTADXNITAEHSNHPENKHKNRYINILAYDHSRV 74
Query: 651 ILSTVDGIPGRDG----FI--DFIGQVHKTKEQFGQDGPI 684
L +PG+D +I +++ +K K GP+
Sbjct: 75 KLRP---LPGKDSKHSDYINANYVDGYNKAKAYIATQGPL 111
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 1710 VLLFILKSSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAKEQYQFCYHAALEYLGSFD 1769
VL F+ +SS + GP++VHCSAGVGRTG +IVID+ Q Q + + LG
Sbjct: 221 VLTFVRRSS---AARXPETGPVLVHCSAGVGRTGTYIVIDSXLQ-QIKDKSTVNVLGFLK 276
Query: 1770 H 1770
H
Sbjct: 277 H 277
Score = 38.9 bits (89), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 50/110 (45%), Gaps = 22/110 (20%)
Query: 492 IPARSLHVHIQKLMSMEVGDTSTGMELEFKKLS------NIRAEPSRFISASLPCNKHKN 545
IP + HI +L S + G +F+++ NI AE S P NKHKN
Sbjct: 11 IPVKQFVKHIGELYS----NNQHGFSEDFEEVQRCTADXNITAEHSNH-----PENKHKN 61
Query: 546 RLVHILPVESSRVCLTPVRG-----DGFI--DFIGQVHKTKEQFGQDGPI 588
R ++IL + SRV L P+ G +I +++ +K K GP+
Sbjct: 62 RYINILAYDHSRVKLRPLPGKDSKHSDYINANYVDGYNKAKAYIATQGPL 111
>pdb|1YGR|A Chain A, Crystal Structure Of The Tandem Phosphatase Domain Of Rptp
Cd45
pdb|1YGR|B Chain B, Crystal Structure Of The Tandem Phosphatase Domain Of Rptp
Cd45
pdb|1YGU|A Chain A, Crystal Structure Of The Tandem Phosphatase Domains Of
Rptp Cd45 With A Ptyr Peptide
pdb|1YGU|B Chain B, Crystal Structure Of The Tandem Phosphatase Domains Of
Rptp Cd45 With A Ptyr Peptide
Length = 610
Score = 256 bits (654), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 139/368 (37%), Positives = 209/368 (56%), Gaps = 16/368 (4%)
Query: 197 PIPISRLAQHIENLKANDNLKFSQEYESI-EPGQQFTWDHSSMEMNKAKNRYANVIAYDH 255
PI L + + A++ F E++SI +F + N+ KNRY +++ YD+
Sbjct: 9 PIHADILLETYKRKIADEGRPFLAEFQSIPRVFSKFPIKEARKPFNQNKNRYVDILPYDY 68
Query: 256 SRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMM 315
+RV LS ++G GS+YINA+Y DG+++ Y+A QGP ET+ DFWR +WE ++ IV +
Sbjct: 69 NRVELSEINGDAGSNYINASYIDGFKEPRKYIAAQGPRDETVDDFWRXIWEQKATVIVXV 128
Query: 316 TKLEERTRIKCDQYWPS--RGTETYGHITVTLQDVQELASYCIRTF-MINKGADSERREI 372
T+ EE R KC +YWPS GT +G + V + + Y I+ ++NK + RE+
Sbjct: 129 TRCEEGNRNKCAEYWPSXEEGTRAFGDVVVKINQHKRCPDYIIQKLNIVNKKEKATGREV 188
Query: 373 KQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRT 432
+QFT+WPDHGVPE P L RRV A + N GP++VH SAGVGRT
Sbjct: 189 THIQFTSWPDHGVPEDPHLLLKLRRRVNAFS-----------NFFSGPIVVHSSAGVGRT 237
Query: 433 GCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLEAVLCGNTEI 492
G +I IDA +E ++ + VD+YG+V LR QR VQ E QY+ IH AL+E G TE+
Sbjct: 238 GTYIGIDAXLEGLEAENKVDVYGYVVKLRRQRCLXVQVEAQYILIHQALVEYNQFGETEV 297
Query: 493 PARSLHVHIQKLMSMEVGDTSTGMELEFKKLSNIRAEPSRFISASLPCNKHKNRLVHILP 552
LH ++ + + +E EF++L + R+ ++ I + NK KNR +++P
Sbjct: 298 NLSELHPYLHNXKKRDPPSEPSPLEAEFQRLPSYRSWRTQHI-GNQEENKSKNRNSNVIP 356
Query: 553 VESSRVCL 560
+ +RV L
Sbjct: 357 YDYNRVPL 364
Score = 235 bits (600), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 120/290 (41%), Positives = 171/290 (58%), Gaps = 15/290 (5%)
Query: 721 RILRTQRPAMVQTESI-EPGQQFTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVDGIPG 779
+I RP + + +SI +F + N+ KNRY +++ YD++RV LS ++G G
Sbjct: 22 KIADEGRPFLAEFQSIPRVFSKFPIKEARKPFNQNKNRYVDILPYDYNRVELSEINGDAG 81
Query: 780 SDYINANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQ 839
S+YINA+Y DG+++ Y+A QGP ET+ DFWR +WE ++ IV +T+ EE R KC +
Sbjct: 82 SNYINASYIDGFKEPRKYIAAQGPRDETVDDFWRXIWEQKATVIVXVTRCEEGNRNKCAE 141
Query: 840 YWPS--RGTETYGHITVTLQDVQELASYCIRTF-MINKGADSERREIKQLQFTAWPDHGV 896
YWPS GT +G + V + + Y I+ ++NK + RE+ +QFT+WPDHGV
Sbjct: 142 YWPSXEEGTRAFGDVVVKINQHKRCPDYIIQKLNIVNKKEKATGREVTHIQFTSWPDHGV 201
Query: 897 PEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERI 956
PE P L RRV A + N GP++VH SAGVGRTG +I IDA +E +
Sbjct: 202 PEDPHLLLKLRRRVNAFS-----------NFFSGPIVVHSSAGVGRTGTYIGIDAXLEGL 250
Query: 957 KHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLEAVLCGNTEIPAS 1006
+ + VD+YG+V LR QR VQ E QY+ IH AL+E G TE+ S
Sbjct: 251 EAENKVDVYGYVVKLRRQRCLXVQVEAQYILIHQALVEYNQFGETEVNLS 300
Score = 161 bits (408), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 148/560 (26%), Positives = 239/560 (42%), Gaps = 109/560 (19%)
Query: 536 ASLPCNKHKNRLVHILPVESSRVCLTPVR---GDGFID--FIGQVHKTKEQFGQDGPITV 590
A P N++KNR V ILP + +RV L+ + G +I+ +I + ++ GP
Sbjct: 49 ARKPFNQNKNRYVDILPYDYNRVELSEINGDAGSNYINASYIDGFKEPRKYIAAQGPRDE 108
Query: 591 HCSRLAQHIENLKA-----------NDNLKFSQEYESIEPGQQFTWDHSSMEMNKAKNRY 639
+ I KA + K ++ + S E G + D +++N+ K
Sbjct: 109 TVDDFWRXIWEQKATVIVXVTRCEEGNRNKCAEYWPSXEEGTRAFGD-VVVKINQHKRCP 167
Query: 640 ANVIAYDHSRVILSTVDGIPGRD-GFIDFIG--------------QVHKTKEQFGQ--DG 682
+I I++ + GR+ I F ++ + F G
Sbjct: 168 DYII---QKLNIVNKKEKATGREVTHIQFTSWPDHGVPEDPHLLLKLRRRVNAFSNFFSG 224
Query: 683 PITVHCSAGVGRTGVFITLSIVLERMQYE------GVIDLFQTVRILRTQRPA---MVQT 733
PI VH SAGVGRTG +I + LE ++ E G + + R L Q A ++
Sbjct: 225 PIVVHSSAGVGRTGTYIGIDAXLEGLEAENKVDVYGYVVKLRRQRCLXVQVEAQYILIHQ 284
Query: 734 ESIEPGQ--------------------------------QF-------TW--DH-SSMEM 751
+E Q +F +W H + E
Sbjct: 285 ALVEYNQFGETEVNLSELHPYLHNXKKRDPPSEPSPLEAEFQRLPSYRSWRTQHIGNQEE 344
Query: 752 NKAKNRYANVIAYDHSRVILS-------------------TVDGIPGSDYINANYCDGYR 792
NK+KNR +NVI YD++RV L D S YINA++ Y
Sbjct: 345 NKSKNRNSNVIPYDYNRVPLKHELEMSKESEHDSDESSDDDSDSEEPSKYINASFIXSYW 404
Query: 793 KHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGHI 852
K +A QGPL+ET+GDFW+ +++ + IV +T+L+ + C QYW G +TYG I
Sbjct: 405 KPEVXIAAQGPLKETIGDFWQXIFQRKVKVIVXLTELKHGDQEICAQYW-GEGKQTYGDI 463
Query: 853 TVTLQDVQELASYCIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRA 912
V L+D + ++Y +R F + + R + Q Q+T W +P P + ++ V+
Sbjct: 464 EVDLKDTDKSSTYTLRVFELRHSKRKDSRTVYQYQYTNWSVEQLPAEPKELISXIQVVKQ 523
Query: 913 MNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLR 972
P NS E + + PL++HC G +TG F + ++E + ++ VDI+ V LR
Sbjct: 524 KLPQKNSSEGNKHHKST-PLLIHCRDGSQQTGIFCALLNLLESAETEEVVDIFQVVKALR 582
Query: 973 AQRNYMVQTEDQYMFIHDAL 992
R V T +QY F++D +
Sbjct: 583 KARLGXVSTFEQYQFLYDVI 602
Score = 150 bits (378), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 86/264 (32%), Positives = 136/264 (51%), Gaps = 21/264 (7%)
Query: 237 SMEMNKAKNRYANVIAYDHSRVILS-------------------TVDGIPGSDYINANYC 277
+ E NK+KNR +NVI YD++RV L D S YINA++
Sbjct: 341 NQEENKSKNRNSNVIPYDYNRVPLKHELEMSKESEHDSDESSDDDSDSEEPSKYINASFI 400
Query: 278 DGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTET 337
Y K +A QGPL+ET+GDFW+ +++ + IV +T+L+ + C QYW G +T
Sbjct: 401 XSYWKPEVXIAAQGPLKETIGDFWQXIFQRKVKVIVXLTELKHGDQEICAQYW-GEGKQT 459
Query: 338 YGHITVTLQDVQELASYCIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLR 397
YG I V L+D + ++Y +R F + + R + Q Q+T W +P P + ++
Sbjct: 460 YGDIEVDLKDTDKSSTYTLRVFELRHSKRKDSRTVYQYQYTNWSVEQLPAEPKELISXIQ 519
Query: 398 RVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHV 457
V+ P NS E + + PL++HC G +TG F + ++E + ++ VDI+ V
Sbjct: 520 VVKQKLPQKNSSEGNKHHKST-PLLIHCRDGSQQTGIFCALLNLLESAETEEVVDIFQVV 578
Query: 458 TCLRAQRNYMVQTEDQYMFIHDAL 481
LR R V T +QY F++D +
Sbjct: 579 KALRKARLGXVSTFEQYQFLYDVI 602
Score = 110 bits (275), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 93/185 (50%), Gaps = 35/185 (18%)
Query: 1315 ASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFIDGYRLRSAYIATQGPLAD 1374
A P N++KNR V ILP + +RV L+ + G GS+YINAS+IDG++ YIA QGP +
Sbjct: 49 ARKPFNQNKNRYVDILPYDYNRVELSEINGDAGSNYINASYIDGFKEPRKYIAAQGPRDE 108
Query: 1375 TTEDFWRMLWEHNSTIVVMLTKLKEMGR-------------------------------- 1402
T +DFWR +WE +T++V +T+ +E R
Sbjct: 109 TVDDFWRXIWEQKATVIVXVTRCEEGNRNKCAEYWPSXEEGTRAFGDVVVKINQHKRCPD 168
Query: 1403 YVLREFKVTDARD-ATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPI 1461
Y++++ + + ++ AT R + Q WP+ GVP+ + +V+ F GPI
Sbjct: 169 YIIQKLNIVNKKEKATGREVTHIQFTSWPDHGVPEDPHLLLKLRRRVNAFSNFFS--GPI 226
Query: 1462 TVHCS 1466
VH S
Sbjct: 227 VVHSS 231
Score = 84.7 bits (208), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 77/147 (52%), Gaps = 5/147 (3%)
Query: 1502 SQEKCHQYWPS-ERSIRYEWFVVEPIAEYNM-PQYVLREFKVTDARD-ATSRTLRQFQLI 1558
++ KC +YWPS E R VV I ++ P Y++++ + + ++ AT R + Q
Sbjct: 135 NRNKCAEYWPSXEEGTRAFGDVVVKINQHKRCPDYIIQKLNIVNKKEKATGREVTHIQFT 194
Query: 1559 DWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQY 1618
WP+ GVP+ + +V+ F GPI VH SAGVGRTG +I + LE ++
Sbjct: 195 SWPDHGVPEDPHLLLKLRRRVNAFSNFFS--GPIVVHSSAGVGRTGTYIGIDAXLEGLEA 252
Query: 1619 EGVIDLFQTVRILRTQRPAMVQTEHLY 1645
E +D++ V LR QR VQ E Y
Sbjct: 253 ENKVDVYGYVVKLRRQRCLXVQVEAQY 279
Score = 67.8 bits (164), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 94/227 (41%), Gaps = 59/227 (25%)
Query: 1296 KTEFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLTPVRGIEG-------- 1347
+ EF++L + R+ ++ I + NK KNR +++P + +RV L +
Sbjct: 322 EAEFQRLPSYRSWRTQHI-GNQEENKSKNRNSNVIPYDYNRVPLKHELEMSKESEHDSDE 380
Query: 1348 -----------SDYINASFIDGYRLRSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTK 1396
S YINASFI Y IA QGPL +T DFW+ +++ ++V LT+
Sbjct: 381 SSDDDSDSEEPSKYINASFIXSYWKPEVXIAAQGPLKETIGDFWQXIFQRKVKVIVXLTE 440
Query: 1397 LK-----------------------------EMGRYVLREFKVTDARDATSRTLRQFQLI 1427
LK + Y LR F++ ++ SRT+ Q+Q
Sbjct: 441 LKHGDQEICAQYWGEGKQTYGDIEVDLKDTDKSSTYTLRVFELRHSKRKDSRTVYQYQYT 500
Query: 1428 DWPEQGVPKSGDGFIDFIGQVHKTK---------EQFGQDGPITVHC 1465
+W + +P I I QV K K + + P+ +HC
Sbjct: 501 NWSVEQLPAEPKELISXI-QVVKQKLPQKNSSEGNKHHKSTPLLIHC 546
Score = 67.4 bits (163), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 69/152 (45%), Gaps = 11/152 (7%)
Query: 1503 QEKCHQYWPSERSIRYEWFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQLIDWPE 1562
QE C QYW E Y V+ Y LR F++ ++ SRT+ Q+Q +W
Sbjct: 446 QEICAQYW-GEGKQTYGDIEVDLKDTDKSSTYTLRVFELRHSKRKDSRTVYQYQYTNWSV 504
Query: 1563 QGVPKSGDGFIDFIGQVHKTK---------EQFGQDGPITVHCSAGVGRTGVFITLSIVL 1613
+ +P I I QV K K + + P+ +HC G +TG+F L +L
Sbjct: 505 EQLPAEPKELISXI-QVVKQKLPQKNSSEGNKHHKSTPLLIHCRDGSQQTGIFCALLNLL 563
Query: 1614 ERMQYEGVIDLFQTVRILRTQRPAMVQTEHLY 1645
E + E V+D+FQ V+ LR R V T Y
Sbjct: 564 ESAETEEVVDIFQVVKALRKARLGXVSTFEQY 595
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 20/26 (76%)
Query: 1725 NLPVGPLIVHCSAGVGRTGCFIVIDA 1750
N GP++VH SAGVGRTG +I IDA
Sbjct: 220 NFFSGPIVVHSSAGVGRTGTYIGIDA 245
Score = 37.4 bits (85), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 590 VHCSRLAQHIENLKANDNLKFSQEYESI-EPGQQFTWDHSSMEMNKAKNRYANVIAYDHS 648
+H L + + A++ F E++SI +F + N+ KNRY +++ YD++
Sbjct: 10 IHADILLETYKRKIADEGRPFLAEFQSIPRVFSKFPIKEARKPFNQNKNRYVDILPYDYN 69
Query: 649 RVILSTVDGIPGRD 662
RV LS ++G G +
Sbjct: 70 RVELSEINGDAGSN 83
>pdb|3I36|A Chain A, Crystal Structure Of Rat Protein Tyrosine Phosphatase Eta
Catalytic Domain
Length = 342
Score = 231 bits (590), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 123/289 (42%), Positives = 167/289 (57%), Gaps = 11/289 (3%)
Query: 198 IPISRLAQHIENLKANDNLKFSQEYESIEP-GQQFTWDHSSMEMNKAKNRYANVIAYDHS 256
I + + + +A+ N F++EYE ++ G + + N+ KNRY NV+ YD S
Sbjct: 26 IRVENFEAYFKKQQADSNCGFAEEYEDLKLIGISLPKYAAEIAENRGKNRYNNVLPYDIS 85
Query: 257 RVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMT 316
RV LS V DYINANY GY ++ATQGPL TL DFWRMVWE IVM+T
Sbjct: 86 RVKLS-VQTHSTDDYINANYMPGYHSKKDFIATQGPLPNTLKDFWRMVWEKNVYAIVMLT 144
Query: 317 KLEERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYCIRTFMINKGADSERREIKQLQ 376
K E+ R KC++YWPS+ + YG ITV + L + IR F++ SE ++Q
Sbjct: 145 KCVEQGRTKCEEYWPSKQAQDYGDITVAMTSEVVLPEWTIRDFVVKNMQSSESHPLRQFH 204
Query: 377 FTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFI 436
FT+WPDHGVP+ + F VR P P++VHCSAGVGRTG FI
Sbjct: 205 FTSWPDHGVPDTTDLLINFRYLVRDYMKQIP---------PESPILVHCSAGVGRTGTFI 255
Query: 437 VIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLEAV 485
ID +I +I+++ TVD+YG V LR R MVQTEDQY+F++ +L+ +
Sbjct: 256 AIDRLIYQIENENTVDVYGIVYDLRMHRPLMVQTEDQYVFLNQCVLDII 304
Score = 224 bits (570), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 115/245 (46%), Positives = 148/245 (60%), Gaps = 10/245 (4%)
Query: 752 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 811
N+ KNRY NV+ YD SRV LS V DYINANY GY ++ATQGPL TL DF
Sbjct: 70 NRGKNRYNNVLPYDISRVKLS-VQTHSTDDYINANYMPGYHSKKDFIATQGPLPNTLKDF 128
Query: 812 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYCIRTFM 871
WRMVWE IVM+TK E+ R KC++YWPS+ + YG ITV + L + IR F+
Sbjct: 129 WRMVWEKNVYAIVMLTKCVEQGRTKCEEYWPSKQAQDYGDITVAMTSEVVLPEWTIRDFV 188
Query: 872 INKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGP 931
+ SE ++Q FT+WPDHGVP+ + F VR P P
Sbjct: 189 VKNMQSSESHPLRQFHFTSWPDHGVPDTTDLLINFRYLVRDYMKQIP---------PESP 239
Query: 932 LIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDA 991
++VHCSAGVGRTG FI ID +I +I+++ TVD+YG V LR R MVQTEDQY+F++
Sbjct: 240 ILVHCSAGVGRTGTFIAIDRLIYQIENENTVDVYGIVYDLRMHRPLMVQTEDQYVFLNQC 299
Query: 992 LLEAV 996
+L+ +
Sbjct: 300 VLDII 304
Score = 121 bits (303), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 94/169 (55%), Gaps = 3/169 (1%)
Query: 1490 FCSVLIAYLVLFSQEKCHQYWPSERSIRYEWFVVEPIAEYNMPQYVLREFKVTDARDATS 1549
+ V++ V + KC +YWPS+++ Y V +E +P++ +R+F V + + + S
Sbjct: 138 YAIVMLTKCVEQGRTKCEEYWPSKQAQDYGDITVAMTSEVVLPEWTIRDFVVKNMQSSES 197
Query: 1550 RTLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITL 1609
LRQF WP+ GVP + D I+F V +Q + PI VHCSAGVGRTG FI +
Sbjct: 198 HPLRQFHFTSWPDHGVPDTTDLLINFRYLVRDYMKQIPPESPILVHCSAGVGRTGTFIAI 257
Query: 1610 SIVLERMQYEGVIDLFQTVRILRTQRPAMVQTEHLYTSSPFSEQLALDM 1658
++ +++ E +D++ V LR RP MVQTE Y F Q LD+
Sbjct: 258 DRLIYQIENENTVDVYGIVYDLRMHRPLMVQTEDQYV---FLNQCVLDI 303
Score = 120 bits (302), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 67/183 (36%), Positives = 95/183 (51%), Gaps = 31/183 (16%)
Query: 1314 SASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFIDGYRLRSAYIATQGPLA 1373
+A + N+ KNR ++LP + SRV L+ V+ DYINA+++ GY + +IATQGPL
Sbjct: 64 AAEIAENRGKNRYNNVLPYDISRVKLS-VQTHSTDDYINANYMPGYHSKKDFIATQGPLP 122
Query: 1374 DTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------------------------Y 1403
+T +DFWRM+WE N +VMLTK E GR +
Sbjct: 123 NTLKDFWRMVWEKNVYAIVMLTKCVEQGRTKCEEYWPSKQAQDYGDITVAMTSEVVLPEW 182
Query: 1404 VLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITV 1463
+R+F V + + + S LRQF WP+ GVP + D I+F V +Q + PI V
Sbjct: 183 TIRDFVVKNMQSSESHPLRQFHFTSWPDHGVPDTTDLLINFRYLVRDYMKQIPPESPILV 242
Query: 1464 HCS 1466
HCS
Sbjct: 243 HCS 245
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 657 GIPGR-DGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVID 715
G+P D I+F V +Q + PI VHCSAGVGRTG FI + ++ +++ E +D
Sbjct: 212 GVPDTTDLLINFRYLVRDYMKQIPPESPILVHCSAGVGRTGTFIAIDRLIYQIENENTVD 271
Query: 716 LFQTVRILRTQRPAMVQTE 734
++ V LR RP MVQTE
Sbjct: 272 VYGIVYDLRMHRPLMVQTE 290
Score = 43.9 bits (102), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 17/23 (73%), Positives = 19/23 (82%)
Query: 1727 PVGPLIVHCSAGVGRTGCFIVID 1749
P P++VHCSAGVGRTG FI ID
Sbjct: 236 PESPILVHCSAGVGRTGTFIAID 258
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
Query: 590 VHCSRLAQHIENLKANDNLKFSQEYESIEP-GQQFTWDHSSMEMNKAKNRYANVIAYDHS 648
+ + + +A+ N F++EYE ++ G + + N+ KNRY NV+ YD S
Sbjct: 26 IRVENFEAYFKKQQADSNCGFAEEYEDLKLIGISLPKYAAEIAENRGKNRYNNVLPYDIS 85
Query: 649 RVILSTVDGIPGRDGFI--DFIGQVHKTKEQFGQDGPI 684
RV LS D +I +++ H K+ GP+
Sbjct: 86 RVKLSV--QTHSTDDYINANYMPGYHSKKDFIATQGPL 121
>pdb|3S3E|A Chain A, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster
pdb|3S3E|B Chain B, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster
pdb|3S3F|A Chain A, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster With A Small Molecule Inhibitor
Vanadate
pdb|3S3F|B Chain B, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster With A Small Molecule Inhibitor
Vanadate
pdb|3S3H|A Chain A, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster With A Phosphopeptide Substrate
Gp4
pdb|3S3H|B Chain B, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster With A Phosphopeptide Substrate
Gp4
pdb|3S3K|A Chain A, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster With A Small Molecular Inhibitor
Para-Nitrocatechol Sulphate
pdb|3S3K|B Chain B, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster With A Small Molecular Inhibitor
Para-Nitrocatechol Sulphate
Length = 307
Score = 228 bits (580), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 121/294 (41%), Positives = 169/294 (57%), Gaps = 16/294 (5%)
Query: 197 PIPISRLAQHIENLKANDNLKFSQEYESIEP-GQQFTWDHSSMEMNKAKNRYANVIAYDH 255
PI I A+H + A+ + +FS+E+E ++ G+ + + N+ KNR+ N++ YDH
Sbjct: 25 PILIKNFAEHYRLMSADSDFRFSEEFEELKHVGRDQPCTFADLPCNRPKNRFTNILPYDH 84
Query: 256 SRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMM 315
SR L VD GSDYINANY G+ ++ TQGPL T DFWRM WE S IVM+
Sbjct: 85 SRFKLQPVDDDEGSDYINANYVPGHNSPREFIVTQGPLHSTRDDFWRMCWESNSRAIVML 144
Query: 316 TKLEERTRIKCDQYWPSRGTET-YGHITVTLQDVQELASYCIRTFMINKGADSERREIKQ 374
T+ E+ R KCDQYWP+ YG I V + + A + + FM+ +G SE+R ++
Sbjct: 145 TRCFEKGREKCDQYWPNDTVPVFYGDIKVQILNDSHYADWVMTEFMLCRG--SEQRILRH 202
Query: 375 LQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGC 434
FT WPD GVP P + F+R R + P++VHCSAGVGR+G
Sbjct: 203 FHFTTWPDFGVPNPPQTLVRFVRAFR-----------DRIGAEQRPIVVHCSAGVGRSGT 251
Query: 435 FIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLEAVLCG 488
FI +D ++++I VDI+G V +R +R +MVQTE QY+ IH LL AVL G
Sbjct: 252 FITLDRILQQINTSDYVDIFGIVYAMRKERVWMVQTEQQYICIHQCLL-AVLEG 304
Score = 211 bits (536), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 110/254 (43%), Positives = 148/254 (58%), Gaps = 15/254 (5%)
Query: 747 SSMEMNKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQE 806
+ + N+ KNR+ N++ YDHSR L VD GSDYINANY G+ ++ TQGPL
Sbjct: 65 ADLPCNRPKNRFTNILPYDHSRFKLQPVDDDEGSDYINANYVPGHNSPREFIVTQGPLHS 124
Query: 807 TLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTET-YGHITVTLQDVQELASY 865
T DFWRM WE S IVM+T+ E+ R KCDQYWP+ YG I V + + A +
Sbjct: 125 TRDDFWRMCWESNSRAIVMLTRCFEKGREKCDQYWPNDTVPVFYGDIKVQILNDSHYADW 184
Query: 866 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 925
+ FM+ +G SE+R ++ FT WPD GVP P + F+R R +
Sbjct: 185 VMTEFMLCRG--SEQRILRHFHFTTWPDFGVPNPPQTLVRFVRAFR-----------DRI 231
Query: 926 NLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQY 985
P++VHCSAGVGR+G FI +D ++++I VDI+G V +R +R +MVQTE QY
Sbjct: 232 GAEQRPIVVHCSAGVGRSGTFITLDRILQQINTSDYVDIFGIVYAMRKERVWMVQTEQQY 291
Query: 986 MFIHDALLEAVLCG 999
+ IH LL AVL G
Sbjct: 292 ICIHQCLL-AVLEG 304
Score = 125 bits (314), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 103/206 (50%), Gaps = 40/206 (19%)
Query: 1294 RGKTEFKKLSNI-RAEPSRFISASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYIN 1352
R EF++L ++ R +P F A LPCN+ KNR +ILP + SR L PV EGSDYIN
Sbjct: 45 RFSEEFEELKHVGRDQPCTF--ADLPCNRPKNRFTNILPYDHSRFKLQPVDDDEGSDYIN 102
Query: 1353 ASFIDGYRLRSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR---------- 1402
A+++ G+ +I TQGPL T +DFWRM WE NS +VMLT+ E GR
Sbjct: 103 ANYVPGHNSPREFIVTQGPLHSTRDDFWRMCWESNSRAIVMLTRCFEKGREKCDQYWPND 162
Query: 1403 ---------------------YVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGF 1441
+V+ EF + R + R LR F WP+ GVP
Sbjct: 163 TVPVFYGDIKVQILNDSHYADWVMTEFML--CRGSEQRILRHFHFTTWPDFGVPNPPQTL 220
Query: 1442 IDFIGQVHKTKEQFG-QDGPITVHCS 1466
+ F V +++ G + PI VHCS
Sbjct: 221 VRF---VRAFRDRIGAEQRPIVVHCS 243
Score = 94.4 bits (233), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 80/146 (54%), Gaps = 7/146 (4%)
Query: 1502 SQEKCHQYWPSER-SIRYEWFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQLIDW 1560
+EKC QYWP++ + Y V+ + + + +V+ EF + R + R LR F W
Sbjct: 151 GREKCDQYWPNDTVPVFYGDIKVQILNDSHYADWVMTEFML--CRGSEQRILRHFHFTTW 208
Query: 1561 PEQGVPKSGDGFIDFIGQVHKTKEQFG-QDGPITVHCSAGVGRTGVFITLSIVLERMQYE 1619
P+ GVP + F V +++ G + PI VHCSAGVGR+G FITL +L+++
Sbjct: 209 PDFGVPNPPQTLVRF---VRAFRDRIGAEQRPIVVHCSAGVGRSGTFITLDRILQQINTS 265
Query: 1620 GVIDLFQTVRILRTQRPAMVQTEHLY 1645
+D+F V +R +R MVQTE Y
Sbjct: 266 DYVDIFGIVYAMRKERVWMVQTEQQY 291
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 36/52 (69%)
Query: 683 PITVHCSAGVGRTGVFITLSIVLERMQYEGVIDLFQTVRILRTQRPAMVQTE 734
PI VHCSAGVGR+G FITL +L+++ +D+F V +R +R MVQTE
Sbjct: 237 PIVVHCSAGVGRSGTFITLDRILQQINTSDYVDIFGIVYAMRKERVWMVQTE 288
Score = 50.8 bits (120), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 15/99 (15%)
Query: 595 LAQHIENLKANDNLKFSQEYESIEP-GQQFTWDHSSMEMNKAKNRYANVIAYDHSRVILS 653
A+H + A+ + +FS+E+E ++ G+ + + N+ KNR+ N++ YDHSR L
Sbjct: 31 FAEHYRLMSADSDFRFSEEFEELKHVGRDQPCTFADLPCNRPKNRFTNILPYDHSRFKLQ 90
Query: 654 TVDG-----------IPGRDGFIDFI---GQVHKTKEQF 678
VD +PG + +FI G +H T++ F
Sbjct: 91 PVDDDEGSDYINANYVPGHNSPREFIVTQGPLHSTRDDF 129
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 503 KLMSMEVGDTSTGMELEFKKLSNI-RAEPSRFISASLPCNKHKNRLVHILPVESSRVCLT 561
+LMS D+ EF++L ++ R +P F A LPCN+ KNR +ILP + SR L
Sbjct: 36 RLMS---ADSDFRFSEEFEELKHVGRDQPCTF--ADLPCNRPKNRFTNILPYDHSRFKLQ 90
Query: 562 PVRGDGFIDFIG 573
PV D D+I
Sbjct: 91 PVDDDEGSDYIN 102
Score = 38.1 bits (87), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 14/20 (70%), Positives = 18/20 (90%)
Query: 1730 PLIVHCSAGVGRTGCFIVID 1749
P++VHCSAGVGR+G FI +D
Sbjct: 237 PIVVHCSAGVGRSGTFITLD 256
>pdb|2NZ6|A Chain A, Crystal Structure Of The Ptprj Inactivating Mutant C1239s
Length = 316
Score = 226 bits (577), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 123/289 (42%), Positives = 169/289 (58%), Gaps = 11/289 (3%)
Query: 198 IPISRLAQHIENLKANDNLKFSQEYESIE-PGQQFTWDHSSMEMNKAKNRYANVIAYDHS 256
I + + + +A+ N F++EYE ++ G + + N+ KNRY NV+ YD S
Sbjct: 26 IRVENFEAYFKKQQADSNCGFAEEYEDLKLVGISQPKYAAELAENRGKNRYNNVLPYDIS 85
Query: 257 RVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMT 316
RV LS V DYINANY GY ++ATQGPL TL DFWRMVWE I+M+T
Sbjct: 86 RVKLS-VQTHSTDDYINANYMPGYHSKKDFIATQGPLPNTLKDFWRMVWEKNVYAIIMLT 144
Query: 317 KLEERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYCIRTFMINKGADSERREIKQLQ 376
K E+ R KC++YWPS+ + YG ITV + L + IR F + SE ++Q
Sbjct: 145 KCVEQGRTKCEEYWPSKQAQDYGDITVAMTSEIVLPEWTIRDFTVKNIQTSESHPLRQFH 204
Query: 377 FTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFI 436
FT+WPDHGVP+ + F VR + ++ S P P++VH SAGVGRTG FI
Sbjct: 205 FTSWPDHGVPDTTDLLINFRYLVR------DYMKQSP---PESPILVHSSAGVGRTGTFI 255
Query: 437 VIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLEAV 485
ID +I +I+++ TVD+YG V LR R MVQTEDQY+F++ +L+ V
Sbjct: 256 AIDRLIYQIENENTVDVYGIVYDLRMHRPLMVQTEDQYVFLNQCVLDIV 304
Score = 220 bits (560), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 115/250 (46%), Positives = 152/250 (60%), Gaps = 10/250 (4%)
Query: 747 SSMEMNKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQE 806
+ + N+ KNRY NV+ YD SRV LS V DYINANY GY ++ATQGPL
Sbjct: 65 AELAENRGKNRYNNVLPYDISRVKLS-VQTHSTDDYINANYMPGYHSKKDFIATQGPLPN 123
Query: 807 TLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYC 866
TL DFWRMVWE I+M+TK E+ R KC++YWPS+ + YG ITV + L +
Sbjct: 124 TLKDFWRMVWEKNVYAIIMLTKCVEQGRTKCEEYWPSKQAQDYGDITVAMTSEIVLPEWT 183
Query: 867 IRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVN 926
IR F + SE ++Q FT+WPDHGVP+ + F VR + ++ S
Sbjct: 184 IRDFTVKNIQTSESHPLRQFHFTSWPDHGVPDTTDLLINFRYLVR------DYMKQSP-- 235
Query: 927 LPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYM 986
P P++VH SAGVGRTG FI ID +I +I+++ TVD+YG V LR R MVQTEDQY+
Sbjct: 236 -PESPILVHSSAGVGRTGTFIAIDRLIYQIENENTVDVYGIVYDLRMHRPLMVQTEDQYV 294
Query: 987 FIHDALLEAV 996
F++ +L+ V
Sbjct: 295 FLNQCVLDIV 304
Score = 116 bits (290), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 94/183 (51%), Gaps = 31/183 (16%)
Query: 1314 SASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFIDGYRLRSAYIATQGPLA 1373
+A L N+ KNR ++LP + SRV L+ V+ DYINA+++ GY + +IATQGPL
Sbjct: 64 AAELAENRGKNRYNNVLPYDISRVKLS-VQTHSTDDYINANYMPGYHSKKDFIATQGPLP 122
Query: 1374 DTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------------------------Y 1403
+T +DFWRM+WE N ++MLTK E GR +
Sbjct: 123 NTLKDFWRMVWEKNVYAIIMLTKCVEQGRTKCEEYWPSKQAQDYGDITVAMTSEIVLPEW 182
Query: 1404 VLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITV 1463
+R+F V + + + S LRQF WP+ GVP + D I+F V +Q + PI V
Sbjct: 183 TIRDFTVKNIQTSESHPLRQFHFTSWPDHGVPDTTDLLINFRYLVRDYMKQSPPESPILV 242
Query: 1464 HCS 1466
H S
Sbjct: 243 HSS 245
Score = 115 bits (288), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 93/169 (55%), Gaps = 3/169 (1%)
Query: 1490 FCSVLIAYLVLFSQEKCHQYWPSERSIRYEWFVVEPIAEYNMPQYVLREFKVTDARDATS 1549
+ +++ V + KC +YWPS+++ Y V +E +P++ +R+F V + + + S
Sbjct: 138 YAIIMLTKCVEQGRTKCEEYWPSKQAQDYGDITVAMTSEIVLPEWTIRDFTVKNIQTSES 197
Query: 1550 RTLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITL 1609
LRQF WP+ GVP + D I+F V +Q + PI VH SAGVGRTG FI +
Sbjct: 198 HPLRQFHFTSWPDHGVPDTTDLLINFRYLVRDYMKQSPPESPILVHSSAGVGRTGTFIAI 257
Query: 1610 SIVLERMQYEGVIDLFQTVRILRTQRPAMVQTEHLYTSSPFSEQLALDM 1658
++ +++ E +D++ V LR RP MVQTE Y F Q LD+
Sbjct: 258 DRLIYQIENENTVDVYGIVYDLRMHRPLMVQTEDQYV---FLNQCVLDI 303
Score = 60.8 bits (146), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 657 GIPGR-DGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVID 715
G+P D I+F V +Q + PI VH SAGVGRTG FI + ++ +++ E +D
Sbjct: 212 GVPDTTDLLINFRYLVRDYMKQSPPESPILVHSSAGVGRTGTFIAIDRLIYQIENENTVD 271
Query: 716 LFQTVRILRTQRPAMVQTE 734
++ V LR RP MVQTE
Sbjct: 272 VYGIVYDLRMHRPLMVQTE 290
Score = 39.7 bits (91), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/23 (69%), Positives = 18/23 (78%)
Query: 1727 PVGPLIVHCSAGVGRTGCFIVID 1749
P P++VH SAGVGRTG FI ID
Sbjct: 236 PESPILVHSSAGVGRTGTFIAID 258
Score = 38.9 bits (89), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
Query: 590 VHCSRLAQHIENLKANDNLKFSQEYESIE-PGQQFTWDHSSMEMNKAKNRYANVIAYDHS 648
+ + + +A+ N F++EYE ++ G + + N+ KNRY NV+ YD S
Sbjct: 26 IRVENFEAYFKKQQADSNCGFAEEYEDLKLVGISQPKYAAELAENRGKNRYNNVLPYDIS 85
Query: 649 RVILSTVDGIPGRDGFI--DFIGQVHKTKEQFGQDGPI 684
RV LS D +I +++ H K+ GP+
Sbjct: 86 RVKLSV--QTHSTDDYINANYMPGYHSKKDFIATQGPL 121
>pdb|2CFV|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Receptor Type J
Length = 316
Score = 225 bits (573), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 123/289 (42%), Positives = 169/289 (58%), Gaps = 11/289 (3%)
Query: 198 IPISRLAQHIENLKANDNLKFSQEYESIE-PGQQFTWDHSSMEMNKAKNRYANVIAYDHS 256
I + + + +A+ N F++EYE ++ G + + N+ KNRY NV+ YD S
Sbjct: 26 IRVENFEAYFKKQQADSNCGFAEEYEDLKLVGISQPKYAAELAENRGKNRYNNVLPYDIS 85
Query: 257 RVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMT 316
RV LS V DYINANY GY ++ATQGPL TL DFWRMVWE I+M+T
Sbjct: 86 RVKLS-VQTHSTDDYINANYMPGYHSKKDFIATQGPLPNTLKDFWRMVWEKNVYAIIMLT 144
Query: 317 KLEERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYCIRTFMINKGADSERREIKQLQ 376
K E+ R KC++YWPS+ + YG ITV + L + IR F + SE ++Q
Sbjct: 145 KCVEQGRTKCEEYWPSKQAQDYGDITVAMTSEIVLPEWTIRDFTVKNIQTSESHPLRQFH 204
Query: 377 FTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFI 436
FT+ PDHGVP+ + F VR + ++ S P P++VHCSAGVGRTG FI
Sbjct: 205 FTSAPDHGVPDTTDLLINFRYLVR------DYMKQSP---PESPILVHCSAGVGRTGTFI 255
Query: 437 VIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLEAV 485
ID +I +I+++ TVD+YG V LR R MVQTEDQY+F++ +L+ V
Sbjct: 256 AIDRLIYQIENENTVDVYGIVYDLRMHRPLMVQTEDQYVFLNQCVLDIV 304
Score = 218 bits (556), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 120/295 (40%), Positives = 169/295 (57%), Gaps = 25/295 (8%)
Query: 717 FQTVRILRTQR-PAMVQTESIEPGQQFTWDHSSMEM--------------NKAKNRYANV 761
FQ+++++R + A + + + F ++ +++ N+ KNRY NV
Sbjct: 20 FQSMKLIRVENFEAYFKKQQADSNCGFAEEYEDLKLVGISQPKYAAELAENRGKNRYNNV 79
Query: 762 IAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSV 821
+ YD SRV LS V DYINANY GY ++ATQGPL TL DFWRMVWE
Sbjct: 80 LPYDISRVKLS-VQTHSTDDYINANYMPGYHSKKDFIATQGPLPNTLKDFWRMVWEKNVY 138
Query: 822 TIVMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYCIRTFMINKGADSERR 881
I+M+TK E+ R KC++YWPS+ + YG ITV + L + IR F + SE
Sbjct: 139 AIIMLTKCVEQGRTKCEEYWPSKQAQDYGDITVAMTSEIVLPEWTIRDFTVKNIQTSESH 198
Query: 882 EIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVG 941
++Q FT+ PDHGVP+ + F VR + ++ S P P++VHCSAGVG
Sbjct: 199 PLRQFHFTSAPDHGVPDTTDLLINFRYLVR------DYMKQSP---PESPILVHCSAGVG 249
Query: 942 RTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLEAV 996
RTG FI ID +I +I+++ TVD+YG V LR R MVQTEDQY+F++ +L+ V
Sbjct: 250 RTGTFIAIDRLIYQIENENTVDVYGIVYDLRMHRPLMVQTEDQYVFLNQCVLDIV 304
Score = 114 bits (286), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 94/183 (51%), Gaps = 31/183 (16%)
Query: 1314 SASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFIDGYRLRSAYIATQGPLA 1373
+A L N+ KNR ++LP + SRV L+ V+ DYINA+++ GY + +IATQGPL
Sbjct: 64 AAELAENRGKNRYNNVLPYDISRVKLS-VQTHSTDDYINANYMPGYHSKKDFIATQGPLP 122
Query: 1374 DTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------------------------Y 1403
+T +DFWRM+WE N ++MLTK E GR +
Sbjct: 123 NTLKDFWRMVWEKNVYAIIMLTKCVEQGRTKCEEYWPSKQAQDYGDITVAMTSEIVLPEW 182
Query: 1404 VLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITV 1463
+R+F V + + + S LRQF P+ GVP + D I+F V +Q + PI V
Sbjct: 183 TIRDFTVKNIQTSESHPLRQFHFTSAPDHGVPDTTDLLINFRYLVRDYMKQSPPESPILV 242
Query: 1464 HCS 1466
HCS
Sbjct: 243 HCS 245
Score = 114 bits (284), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 93/169 (55%), Gaps = 3/169 (1%)
Query: 1490 FCSVLIAYLVLFSQEKCHQYWPSERSIRYEWFVVEPIAEYNMPQYVLREFKVTDARDATS 1549
+ +++ V + KC +YWPS+++ Y V +E +P++ +R+F V + + + S
Sbjct: 138 YAIIMLTKCVEQGRTKCEEYWPSKQAQDYGDITVAMTSEIVLPEWTIRDFTVKNIQTSES 197
Query: 1550 RTLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITL 1609
LRQF P+ GVP + D I+F V +Q + PI VHCSAGVGRTG FI +
Sbjct: 198 HPLRQFHFTSAPDHGVPDTTDLLINFRYLVRDYMKQSPPESPILVHCSAGVGRTGTFIAI 257
Query: 1610 SIVLERMQYEGVIDLFQTVRILRTQRPAMVQTEHLYTSSPFSEQLALDM 1658
++ +++ E +D++ V LR RP MVQTE Y F Q LD+
Sbjct: 258 DRLIYQIENENTVDVYGIVYDLRMHRPLMVQTEDQYV---FLNQCVLDI 303
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 112/262 (42%), Gaps = 48/262 (18%)
Query: 510 GDTSTGMELEFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLTPVRGDGFI 569
D++ G E++ L + ++ +A L N+ KNR ++LP + SRV L+ V+
Sbjct: 40 ADSNCGFAEEYEDLKLVGISQPKY-AAELAENRGKNRYNNVLPYDISRVKLS-VQTHSTD 97
Query: 570 DFIGQ-----VHKTKEQFGQDGP---------------------ITVHC-----SRLAQH 598
D+I H K+ GP + C ++ ++
Sbjct: 98 DYINANYMPGYHSKKDFIATQGPLPNTLKDFWRMVWEKNVYAIIMLTKCVEQGRTKCEEY 157
Query: 599 IENLKAND--NLKFSQEYESIEPG---QQFTWDHSSMEMNKAKNRYANVIAYDHSRVILS 653
+ +A D ++ + E + P + FT + + ++ A DH
Sbjct: 158 WPSKQAQDYGDITVAMTSEIVLPEWTIRDFTVKNIQTSESHPLRQFHFTSAPDH------ 211
Query: 654 TVDGIPGR-DGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEG 712
G+P D I+F V +Q + PI VHCSAGVGRTG FI + ++ +++ E
Sbjct: 212 ---GVPDTTDLLINFRYLVRDYMKQSPPESPILVHCSAGVGRTGTFIAIDRLIYQIENEN 268
Query: 713 VIDLFQTVRILRTQRPAMVQTE 734
+D++ V LR RP MVQTE
Sbjct: 269 TVDVYGIVYDLRMHRPLMVQTE 290
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/23 (73%), Positives = 19/23 (82%)
Query: 1727 PVGPLIVHCSAGVGRTGCFIVID 1749
P P++VHCSAGVGRTG FI ID
Sbjct: 236 PESPILVHCSAGVGRTGTFIAID 258
Score = 38.9 bits (89), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
Query: 590 VHCSRLAQHIENLKANDNLKFSQEYESIE-PGQQFTWDHSSMEMNKAKNRYANVIAYDHS 648
+ + + +A+ N F++EYE ++ G + + N+ KNRY NV+ YD S
Sbjct: 26 IRVENFEAYFKKQQADSNCGFAEEYEDLKLVGISQPKYAAELAENRGKNRYNNVLPYDIS 85
Query: 649 RVILSTVDGIPGRDGFI--DFIGQVHKTKEQFGQDGPI 684
RV LS D +I +++ H K+ GP+
Sbjct: 86 RVKLSV--QTHSTDDYINANYMPGYHSKKDFIATQGPL 121
>pdb|2PI7|A Chain A, Structure Of The Catalytic Domain Of The Chick Retinal
Neurite Inhibitor-Receptor Protein Tyrosine Phosphatase
Cryp-2CPTPRO
pdb|2PI7|B Chain B, Structure Of The Catalytic Domain Of The Chick Retinal
Neurite Inhibitor-Receptor Protein Tyrosine Phosphatase
Cryp-2CPTPRO
Length = 312
Score = 219 bits (559), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 118/289 (40%), Positives = 173/289 (59%), Gaps = 17/289 (5%)
Query: 197 PIPISRLAQHIENLKANDNLKFSQEYESIEP-GQQFTWDHSSMEMNKAKNRYANVIAYDH 255
P+ + +I+++ + + KFS ++E ++ G + + MN+ KNRY N++ YD
Sbjct: 13 PVQLDDFDGYIKDMAKDSDYKFSLQFEELKLIGLDIPHFAADLPMNRCKNRYTNILPYDF 72
Query: 256 SRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMM 315
SRV L +++ GSDYINANY GY Y+ATQGPL ET DFW+MV + +S IVM+
Sbjct: 73 SRVRLVSMNEEEGSDYINANYIPGYNSPQEYIATQGPLPETRNDFWKMVLQQKSQIIVML 132
Query: 316 TKLEERTRIKCDQYWP-SRGTETYGHITVTLQDVQELASYCIRTFMINKGADSERREIKQ 374
T+ E+ R+KCD YWP + YG ITV + +E + R F I+ E +++
Sbjct: 133 TQCNEKRRVKCDHYWPFTEDPIAYGDITVEMLSEEEHTDWVYRNFRISYA--DEVQDVMH 190
Query: 375 LQFTAWPDHGVPEHPAP--FLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRT 432
+TAWPDHGVP A L F++ VR S++S GP+I+HCSAGVGRT
Sbjct: 191 FNYTAWPDHGVPTANAAESILQFVQMVRQ-----KSVKSK------GPMIIHCSAGVGRT 239
Query: 433 GCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDAL 481
G FI +D +++ I+ + VDI G V+ +R+ R MVQTE+QY+FIH +
Sbjct: 240 GTFIALDWLLQHIRDHEFVDILGLVSDMRSYRMSMVQTEEQYIFIHQCV 288
Score = 212 bits (540), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 111/249 (44%), Positives = 154/249 (61%), Gaps = 16/249 (6%)
Query: 747 SSMEMNKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQE 806
+ + MN+ KNRY N++ YD SRV L +++ GSDYINANY GY Y+ATQGPL E
Sbjct: 53 ADLPMNRCKNRYTNILPYDFSRVRLVSMNEEEGSDYINANYIPGYNSPQEYIATQGPLPE 112
Query: 807 TLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWP-SRGTETYGHITVTLQDVQELASY 865
T DFW+MV + +S IVM+T+ E+ R+KCD YWP + YG ITV + +E +
Sbjct: 113 TRNDFWKMVLQQKSQIIVMLTQCNEKRRVKCDHYWPFTEDPIAYGDITVEMLSEEEHTDW 172
Query: 866 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAP--FLLFLRRVRAMNPGTNSLESS 923
R F I+ E +++ +TAWPDHGVP A L F++ VR S++S
Sbjct: 173 VYRNFRISYA--DEVQDVMHFNYTAWPDHGVPTANAAESILQFVQMVRQ-----KSVKSK 225
Query: 924 GVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTED 983
GP+I+HCSAGVGRTG FI +D +++ I+ + VDI G V+ +R+ R MVQTE+
Sbjct: 226 ------GPMIIHCSAGVGRTGTFIALDWLLQHIRDHEFVDILGLVSDMRSYRMSMVQTEE 279
Query: 984 QYMFIHDAL 992
QY+FIH +
Sbjct: 280 QYIFIHQCV 288
Score = 108 bits (269), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 100/202 (49%), Gaps = 38/202 (18%)
Query: 1298 EFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFID 1357
+F++L I + F +A LP N+ KNR +ILP + SRV L + EGSDYINA++I
Sbjct: 37 QFEELKLIGLDIPHF-AADLPMNRCKNRYTNILPYDFSRVRLVSMNEEEGSDYINANYIP 95
Query: 1358 GYRLRSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR--------------- 1402
GY YIATQGPL +T DFW+M+ + S I+VMLT+ E R
Sbjct: 96 GYNSPQEYIATQGPLPETRNDFWKMVLQQKSQIIVMLTQCNEKRRVKCDHYWPFTEDPIA 155
Query: 1403 ----------------YVLREFKVTDARDATSRTLRQFQLIDWPEQGVP--KSGDGFIDF 1444
+V R F+++ A + + + F WP+ GVP + + + F
Sbjct: 156 YGDITVEMLSEEEHTDWVYRNFRISYADEV--QDVMHFNYTAWPDHGVPTANAAESILQF 213
Query: 1445 IGQVHKTKEQFGQDGPITVHCS 1466
+ V ++ GP+ +HCS
Sbjct: 214 VQMVR--QKSVKSKGPMIIHCS 233
Score = 89.0 bits (219), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 77/144 (53%), Gaps = 7/144 (4%)
Query: 1505 KCHQYWP-SERSIRYEWFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQLIDWPEQ 1563
KC YWP +E I Y VE ++E +V R F+++ A + + + F WP+
Sbjct: 142 KCDHYWPFTEDPIAYGDITVEMLSEEEHTDWVYRNFRISYADEV--QDVMHFNYTAWPDH 199
Query: 1564 GVP--KSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGV 1621
GVP + + + F+ V + + GP+ +HCSAGVGRTG FI L +L+ ++
Sbjct: 200 GVPTANAAESILQFVQMVRQ--KSVKSKGPMIIHCSAGVGRTGTFIALDWLLQHIRDHEF 257
Query: 1622 IDLFQTVRILRTQRPAMVQTEHLY 1645
+D+ V +R+ R +MVQTE Y
Sbjct: 258 VDILGLVSDMRSYRMSMVQTEEQY 281
Score = 71.2 bits (173), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 68/286 (23%), Positives = 122/286 (42%), Gaps = 40/286 (13%)
Query: 511 DTSTGMELEFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLTPVRGDGFID 570
D+ L+F++L I + F +A LP N+ KNR +ILP + SRV L + + D
Sbjct: 29 DSDYKFSLQFEELKLIGLDIPHF-AADLPMNRCKNRYTNILPYDFSRVRLVSMNEEEGSD 87
Query: 571 FI------------------GQVHKTKEQFG-----QDGPITVHCSRLAQHIENLKANDN 607
+I G + +T+ F Q I V ++ + +K +
Sbjct: 88 YINANYIPGYNSPQEYIATQGPLPETRNDFWKMVLQQKSQIIVMLTQCNEK-RRVKCDHY 146
Query: 608 LKFSQE--------YESIEPGQQFTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVDGIP 659
F+++ E + + W + + ++ A + +V+ ++++ V
Sbjct: 147 WPFTEDPIAYGDITVEMLSEEEHTDWVYRNFRISYA-DEVQDVMHFNYTAWPDHGVPTAN 205
Query: 660 GRDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVIDLFQT 719
+ + F+ V + + GP+ +HCSAGVGRTG FI L +L+ ++ +D+
Sbjct: 206 AAESILQFVQMVRQ--KSVKSKGPMIIHCSAGVGRTGTFIALDWLLQHIRDHEFVDILGL 263
Query: 720 VRILRTQRPAMVQTES----IEPGQQFTWDHSSMEMNKAKNRYANV 761
V +R+ R +MVQTE I Q W + + Y NV
Sbjct: 264 VSDMRSYRMSMVQTEEQYIFIHQCVQLMWQKKKQQFCISDVIYENV 309
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 6/49 (12%)
Query: 1701 AALALSICLVLLFILKSSLESSGVNLPVGPLIVHCSAGVGRTGCFIVID 1749
A A SI + + + S++S G P+I+HCSAGVGRTG FI +D
Sbjct: 204 ANAAESILQFVQMVRQKSVKSKG------PMIIHCSAGVGRTGTFIALD 246
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 598 HIENLKANDNLKFSQEYESIEP-GQQFTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVD 656
+I+++ + + KFS ++E ++ G + + MN+ KNRY N++ YD SRV L +++
Sbjct: 22 YIKDMAKDSDYKFSLQFEELKLIGLDIPHFAADLPMNRCKNRYTNILPYDFSRVRLVSMN 81
Query: 657 GIPGRDGF-IDFIGQVHKTKEQFGQDGPI 684
G D ++I + +E GP+
Sbjct: 82 EEEGSDYINANYIPGYNSPQEYIATQGPL 110
>pdb|2H02|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2H02|B Chain B, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2H04|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2I3R|A Chain A, Engineered Catalytic Domain Of Protein Tyrosine
Phosphatase Hptpbeta
pdb|2I3R|B Chain B, Engineered Catalytic Domain Of Protein Tyrosine
Phosphatase Hptpbeta
pdb|2I3U|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2I4E|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2I4E|B Chain B, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2I4G|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With A Sulfamic Acid
(Soaking Experiment)
pdb|2I4H|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain Co-Crystallized With A Sulfamic Acid
Inhibitor
pdb|2I5X|A Chain A, Engineering The Ptpbeta Catalytic Domain With Improved
Crystallization Properties
pdb|2I5X|B Chain B, Engineering The Ptpbeta Catalytic Domain With Improved
Crystallization Properties
Length = 313
Score = 219 bits (558), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 119/295 (40%), Positives = 169/295 (57%), Gaps = 18/295 (6%)
Query: 197 PIPISRLAQHIENLKANDNLKFSQEYESIEP-GQQFTWDHSSMEMNKAKNRYANVIAYDH 255
PI I++ H L+A+ N S+EYE ++ G+ + D + + N+ KNRY N++ YD
Sbjct: 22 PIKINQFEGHFMKLQADSNYLLSKEYEELKDVGRNQSCDIALLPENRGKNRYNNILPYDA 81
Query: 256 SRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMM 315
+RV LS VD P SDYINA+Y G Y+ TQGPL T DFW+MVWE IVM+
Sbjct: 82 TRVKLSNVDDDPCSDYINASYIPGNNFRREYIVTQGPLPGTKDDFWKMVWEQNVHNIVMV 141
Query: 316 TKLEERTRIKCDQYWPS-RGTETYGHITVTLQDVQELASYCIRTFMI-NKGADSERREIK 373
T+ E+ R+KCD YWP+ + + YG + + + L + IR F I + R I+
Sbjct: 142 TQCVEKGRVKCDHYWPADQDSLYYGDLILQMLSESVLPEWTIREFKICGEEQLDAHRLIR 201
Query: 374 QLQFTAWPDHGVPEHPAPFLLFLRRVRAM---NPGTNSLESSGVNLPVGPLIVHCSAGVG 430
+T WPDHGVPE + F+R VR +PG GP +VHCSAGVG
Sbjct: 202 HFHYTVWPDHGVPETTQSLIQFVRTVRDYINRSPGA------------GPTVVHCSAGVG 249
Query: 431 RTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLEAV 485
RTG FI +D +++++ +VDIYG V LR R +MVQTE QY+++H + + +
Sbjct: 250 RTGTFIALDRILQQLDSKDSVDIYGAVHDLRLHRVHMVQTECQYVYLHQCVRDVL 304
Score = 202 bits (515), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 121/321 (37%), Positives = 176/321 (54%), Gaps = 23/321 (7%)
Query: 681 DGPITVHCSAGVGRTGVFITLSIVLERMQYEGVIDLFQTVRILRTQRPAMVQTESIEPGQ 740
D P++VH + +G+ G T S ++ Q+EG F ++ + E + G+
Sbjct: 2 DRPLSVHLN--LGQKGNRKT-SCPIKINQFEG---HFMKLQADSNYLLSKEYEELKDVGR 55
Query: 741 QFTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVAT 800
+ D + + N+ KNRY N++ YD +RV LS VD P SDYINA+Y G Y+ T
Sbjct: 56 NQSCDIALLPENRGKNRYNNILPYDATRVKLSNVDDDPCSDYINASYIPGNNFRREYIVT 115
Query: 801 QGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPS-RGTETYGHITVTLQDV 859
QGPL T DFW+MVWE IVM+T+ E+ R+KCD YWP+ + + YG + + +
Sbjct: 116 QGPLPGTKDDFWKMVWEQNVHNIVMVTQCVEKGRVKCDHYWPADQDSLYYGDLILQMLSE 175
Query: 860 QELASYCIRTFMI-NKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAM---NP 915
L + IR F I + R I+ +T WPDHGVPE + F+R VR +P
Sbjct: 176 SVLPEWTIREFKICGEEQLDAHRLIRHFHYTVWPDHGVPETTQSLIQFVRTVRDYINRSP 235
Query: 916 GTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQR 975
G GP +VHCSAGVGRTG FI +D +++++ +VDIYG V LR R
Sbjct: 236 GA------------GPTVVHCSAGVGRTGTFIALDRILQQLDSKDSVDIYGAVHDLRLHR 283
Query: 976 NYMVQTEDQYMFIHDALLEAV 996
+MVQTE QY+++H + + +
Sbjct: 284 VHMVQTECQYVYLHQCVRDVL 304
Score = 115 bits (287), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 98/201 (48%), Gaps = 33/201 (16%)
Query: 1298 EFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFID 1357
E+++L ++ S I A LP N+ KNR +ILP +++RV L+ V SDYINAS+I
Sbjct: 46 EYEELKDVGRNQSCDI-ALLPENRGKNRYNNILPYDATRVKLSNVDDDPCSDYINASYIP 104
Query: 1358 GYRLRSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR--------------- 1402
G R YI TQGPL T +DFW+M+WE N +VM+T+ E GR
Sbjct: 105 GNNFRREYIVTQGPLPGTKDDFWKMVWEQNVHNIVMVTQCVEKGRVKCDHYWPADQDSLY 164
Query: 1403 ----------------YVLREFKVTDARDATS-RTLRQFQLIDWPEQGVPKSGDGFIDFI 1445
+ +REFK+ + R +R F WP+ GVP++ I F+
Sbjct: 165 YGDLILQMLSESVLPEWTIREFKICGEEQLDAHRLIRHFHYTVWPDHGVPETTQSLIQFV 224
Query: 1446 GQVHKTKEQFGQDGPITVHCS 1466
V + GP VHCS
Sbjct: 225 RTVRDYINRSPGAGPTVVHCS 245
Score = 106 bits (264), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 86/156 (55%), Gaps = 2/156 (1%)
Query: 1493 VLIAYLVLFSQEKCHQYWPSER-SIRYEWFVVEPIAEYNMPQYVLREFKVTDARDATS-R 1550
V++ V + KC YWP+++ S+ Y +++ ++E +P++ +REFK+ + R
Sbjct: 139 VMVTQCVEKGRVKCDHYWPADQDSLYYGDLILQMLSESVLPEWTIREFKICGEEQLDAHR 198
Query: 1551 TLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLS 1610
+R F WP+ GVP++ I F+ V + GP VHCSAGVGRTG FI L
Sbjct: 199 LIRHFHYTVWPDHGVPETTQSLIQFVRTVRDYINRSPGAGPTVVHCSAGVGRTGTFIALD 258
Query: 1611 IVLERMQYEGVIDLFQTVRILRTQRPAMVQTEHLYT 1646
+L+++ + +D++ V LR R MVQTE Y
Sbjct: 259 RILQQLDSKDSVDIYGAVHDLRLHRVHMVQTECQYV 294
Score = 67.8 bits (164), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 73/265 (27%), Positives = 116/265 (43%), Gaps = 35/265 (13%)
Query: 500 HIQKLMSMEVGDTSTGMELEFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSRVC 559
H KL + D++ + E+++L ++ S I A LP N+ KNR +ILP +++RV
Sbjct: 31 HFMKLQA----DSNYLLSKEYEELKDVGRNQSCDI-ALLPENRGKNRYNNILPYDATRVK 85
Query: 560 LTPVRGDGFIDFIGQVHKTKEQFGQD-----GPI--------------TVH-CSRLAQHI 599
L+ V D D+I + F ++ GP+ VH + Q +
Sbjct: 86 LSNVDDDPCSDYINASYIPGNNFRREYIVTQGPLPGTKDDFWKMVWEQNVHNIVMVTQCV 145
Query: 600 ENLKANDNLKFSQEYESIEPGQ---QFTWDHSSMEMNKAKNRYANVIAYDHSRVILS--- 653
E + + + + +S+ G Q + E + + D R+I
Sbjct: 146 EKGRVKCDHYWPADQDSLYYGDLILQMLSESVLPEWTIREFKICGEEQLDAHRLIRHFHY 205
Query: 654 TV---DGIP-GRDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQ 709
TV G+P I F+ V + GP VHCSAGVGRTG FI L +L+++
Sbjct: 206 TVWPDHGVPETTQSLIQFVRTVRDYINRSPGAGPTVVHCSAGVGRTGTFIALDRILQQLD 265
Query: 710 YEGVIDLFQTVRILRTQRPAMVQTE 734
+ +D++ V LR R MVQTE
Sbjct: 266 SKDSVDIYGAVHDLRLHRVHMVQTE 290
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 582 FGQDGPITVHC----SRLAQHIENLKANDNLKFSQEYESIEP-GQQFTWDHSSMEMNKAK 636
GQ G C ++ H L+A+ N S+EYE ++ G+ + D + + N+ K
Sbjct: 11 LGQKGNRKTSCPIKINQFEGHFMKLQADSNYLLSKEYEELKDVGRNQSCDIALLPENRGK 70
Query: 637 NRYANVIAYDHSRVILSTVDGIPGRD 662
NRY N++ YD +RV LS VD P D
Sbjct: 71 NRYNNILPYDATRVKLSNVDDDPCSD 96
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/22 (72%), Positives = 18/22 (81%)
Query: 1728 VGPLIVHCSAGVGRTGCFIVID 1749
GP +VHCSAGVGRTG FI +D
Sbjct: 237 AGPTVVHCSAGVGRTGTFIALD 258
>pdb|2GJT|A Chain A, Crystal Structure Of The Human Receptor Phosphatase Ptpro
pdb|2GJT|B Chain B, Crystal Structure Of The Human Receptor Phosphatase Ptpro
Length = 295
Score = 218 bits (555), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 116/292 (39%), Positives = 170/292 (58%), Gaps = 17/292 (5%)
Query: 194 SHPPIPISRLAQHIENLKANDNLKFSQEYESIEP-GQQFTWDHSSMEMNKAKNRYANVIA 252
S P+ + +I+++ + + KFS ++E ++ G + + +N+ KNRY N++
Sbjct: 1 SMNPVQLDDFDAYIKDMAKDSDYKFSLQFEELKLIGLDIPHFAADLPLNRCKNRYTNILP 60
Query: 253 YDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTI 312
YD SRV L +++ G+DYINANY GY Y+ATQGPL ET DFW+MV + +S I
Sbjct: 61 YDFSRVRLVSMNEEEGADYINANYIPGYNSPQEYIATQGPLPETRNDFWKMVLQQKSQII 120
Query: 313 VMMTKLEERTRIKCDQYWP-SRGTETYGHITVTLQDVQELASYCIRTFMINKGADSERRE 371
VM+T+ E+ R+KCD YWP + YG ITV + +E + R F IN E ++
Sbjct: 121 VMLTQCNEKRRVKCDHYWPFTEEPIAYGDITVEMISEEEQDDWACRHFRINYA--DEMQD 178
Query: 372 IKQLQFTAWPDHGVPEHPAP--FLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGV 429
+ +TAWPDHGVP A L F+ VR + GP+I+HCSAGV
Sbjct: 179 VMHFNYTAWPDHGVPTANAAESILQFVHMVRQQATKSK-----------GPMIIHCSAGV 227
Query: 430 GRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDAL 481
GRTG FI +D +++ I+ + VDI G V+ +R+ R MVQTE+QY+FIH +
Sbjct: 228 GRTGTFIALDRLLQHIRDHEFVDILGLVSEMRSYRMSMVQTEEQYIFIHQCV 279
Score = 209 bits (533), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 108/249 (43%), Positives = 150/249 (60%), Gaps = 16/249 (6%)
Query: 747 SSMEMNKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQE 806
+ + +N+ KNRY N++ YD SRV L +++ G+DYINANY GY Y+ATQGPL E
Sbjct: 44 ADLPLNRCKNRYTNILPYDFSRVRLVSMNEEEGADYINANYIPGYNSPQEYIATQGPLPE 103
Query: 807 TLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWP-SRGTETYGHITVTLQDVQELASY 865
T DFW+MV + +S IVM+T+ E+ R+KCD YWP + YG ITV + +E +
Sbjct: 104 TRNDFWKMVLQQKSQIIVMLTQCNEKRRVKCDHYWPFTEEPIAYGDITVEMISEEEQDDW 163
Query: 866 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAP--FLLFLRRVRAMNPGTNSLESS 923
R F IN E +++ +TAWPDHGVP A L F+ VR +
Sbjct: 164 ACRHFRINYA--DEMQDVMHFNYTAWPDHGVPTANAAESILQFVHMVRQQATKSK----- 216
Query: 924 GVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTED 983
GP+I+HCSAGVGRTG FI +D +++ I+ + VDI G V+ +R+ R MVQTE+
Sbjct: 217 ------GPMIIHCSAGVGRTGTFIALDRLLQHIRDHEFVDILGLVSEMRSYRMSMVQTEE 270
Query: 984 QYMFIHDAL 992
QY+FIH +
Sbjct: 271 QYIFIHQCV 279
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 100/203 (49%), Gaps = 40/203 (19%)
Query: 1298 EFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFID 1357
+F++L I + F +A LP N+ KNR +ILP + SRV L + EG+DYINA++I
Sbjct: 28 QFEELKLIGLDIPHF-AADLPLNRCKNRYTNILPYDFSRVRLVSMNEEEGADYINANYIP 86
Query: 1358 GYRLRSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR--------------- 1402
GY YIATQGPL +T DFW+M+ + S I+VMLT+ E R
Sbjct: 87 GYNSPQEYIATQGPLPETRNDFWKMVLQQKSQIIVMLTQCNEKRRVKCDHYWPFTEEPIA 146
Query: 1403 ----------------YVLREFKVTDARDATSRTLRQFQLIDWPEQGVP--KSGDGFIDF 1444
+ R F++ A + + + F WP+ GVP + + + F
Sbjct: 147 YGDITVEMISEEEQDDWACRHFRINYADEM--QDVMHFNYTAWPDHGVPTANAAESILQF 204
Query: 1445 IGQVHKTKEQFGQD-GPITVHCS 1466
VH ++Q + GP+ +HCS
Sbjct: 205 ---VHMVRQQATKSKGPMIIHCS 224
Score = 88.6 bits (218), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 77/145 (53%), Gaps = 9/145 (6%)
Query: 1505 KCHQYWP-SERSIRYEWFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQLIDWPEQ 1563
KC YWP +E I Y VE I+E + R F++ A + + + F WP+
Sbjct: 133 KCDHYWPFTEEPIAYGDITVEMISEEEQDDWACRHFRINYADEM--QDVMHFNYTAWPDH 190
Query: 1564 GVP--KSGDGFIDFIGQVHKTKEQFGQD-GPITVHCSAGVGRTGVFITLSIVLERMQYEG 1620
GVP + + + F VH ++Q + GP+ +HCSAGVGRTG FI L +L+ ++
Sbjct: 191 GVPTANAAESILQF---VHMVRQQATKSKGPMIIHCSAGVGRTGTFIALDRLLQHIRDHE 247
Query: 1621 VIDLFQTVRILRTQRPAMVQTEHLY 1645
+D+ V +R+ R +MVQTE Y
Sbjct: 248 FVDILGLVSEMRSYRMSMVQTEEQY 272
Score = 77.4 bits (189), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 126/279 (45%), Gaps = 43/279 (15%)
Query: 511 DTSTGMELEFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLTPVRGDGFID 570
D+ L+F++L I + F +A LP N+ KNR +ILP + SRV L + + D
Sbjct: 20 DSDYKFSLQFEELKLIGLDIPHF-AADLPLNRCKNRYTNILPYDFSRVRLVSMNEEEGAD 78
Query: 571 FI------------------GQVHKTKEQFG-----QDGPITVHCSRLAQHIENLKANDN 607
+I G + +T+ F Q I V ++ + +K +
Sbjct: 79 YINANYIPGYNSPQEYIATQGPLPETRNDFWKMVLQQKSQIIVMLTQCNEK-RRVKCDHY 137
Query: 608 LKFSQE--------YESIEPGQQFTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVDGIP 659
F++E E I +Q W +N A + +V+ ++++ G+P
Sbjct: 138 WPFTEEPIAYGDITVEMISEEEQDDWACRHFRINYA-DEMQDVMHFNYT---AWPDHGVP 193
Query: 660 GRDGFIDFIGQVHKTKEQFGQD-GPITVHCSAGVGRTGVFITLSIVLERMQYEGVIDLFQ 718
+ + VH ++Q + GP+ +HCSAGVGRTG FI L +L+ ++ +D+
Sbjct: 194 TANAAESILQFVHMVRQQATKSKGPMIIHCSAGVGRTGTFIALDRLLQHIRDHEFVDILG 253
Query: 719 TVRILRTQRPAMVQTESIEPGQQFTWDHSSMEMNKAKNR 757
V +R+ R +MVQTE +Q+ + H +++ K +
Sbjct: 254 LVSEMRSYRMSMVQTE-----EQYIFIHQCVQLMWMKKK 287
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/21 (76%), Positives = 19/21 (90%)
Query: 1729 GPLIVHCSAGVGRTGCFIVID 1749
GP+I+HCSAGVGRTG FI +D
Sbjct: 217 GPMIIHCSAGVGRTGTFIALD 237
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 590 VHCSRLAQHIENLKANDNLKFSQEYESIEP-GQQFTWDHSSMEMNKAKNRYANVIAYDHS 648
V +I+++ + + KFS ++E ++ G + + +N+ KNRY N++ YD S
Sbjct: 5 VQLDDFDAYIKDMAKDSDYKFSLQFEELKLIGLDIPHFAADLPLNRCKNRYTNILPYDFS 64
Query: 649 RVILSTVDGIPGRDGF-IDFIGQVHKTKEQFGQDGPI 684
RV L +++ G D ++I + +E GP+
Sbjct: 65 RVRLVSMNEEEGADYINANYIPGYNSPQEYIATQGPL 101
>pdb|2G59|A Chain A, Crystal Structure Of The Catalytic Domain Of Protein
Tyrosine Phosphatase From Homo Sapiens
pdb|2G59|B Chain B, Crystal Structure Of The Catalytic Domain Of Protein
Tyrosine Phosphatase From Homo Sapiens
Length = 297
Score = 218 bits (554), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 115/289 (39%), Positives = 169/289 (58%), Gaps = 17/289 (5%)
Query: 197 PIPISRLAQHIENLKANDNLKFSQEYESIEP-GQQFTWDHSSMEMNKAKNRYANVIAYDH 255
P+ + +I+++ + + KFS ++E ++ G + + +N+ KNRY N++ YD
Sbjct: 6 PVQLDDFDAYIKDMAKDSDYKFSLQFEELKLIGLDIPHFAADLPLNRCKNRYTNILPYDF 65
Query: 256 SRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMM 315
SRV L +++ G+DYINANY GY Y+ATQGPL ET DFW+MV + +S IVM+
Sbjct: 66 SRVRLVSMNEEEGADYINANYIPGYNSPQEYIATQGPLPETRNDFWKMVLQQKSQIIVML 125
Query: 316 TKLEERTRIKCDQYWP-SRGTETYGHITVTLQDVQELASYCIRTFMINKGADSERREIKQ 374
T+ E+ R+KCD YWP + YG ITV + +E + R F IN E +++
Sbjct: 126 TQCNEKRRVKCDHYWPFTEEPIAYGDITVEMISEEEQDDWACRHFRINYA--DEMQDVMH 183
Query: 375 LQFTAWPDHGVPEHPAP--FLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRT 432
+TAWPDHGVP A L F+ VR + GP+I+HCSAGVGRT
Sbjct: 184 FNYTAWPDHGVPTANAAESILQFVHMVRQQATKSK-----------GPMIIHCSAGVGRT 232
Query: 433 GCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDAL 481
G FI +D +++ I+ + VDI G V+ +R+ R MVQTE+QY+FIH +
Sbjct: 233 GTFIALDRLLQHIRDHEFVDILGLVSEMRSYRMSMVQTEEQYIFIHQCV 281
Score = 209 bits (533), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 108/249 (43%), Positives = 150/249 (60%), Gaps = 16/249 (6%)
Query: 747 SSMEMNKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQE 806
+ + +N+ KNRY N++ YD SRV L +++ G+DYINANY GY Y+ATQGPL E
Sbjct: 46 ADLPLNRCKNRYTNILPYDFSRVRLVSMNEEEGADYINANYIPGYNSPQEYIATQGPLPE 105
Query: 807 TLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWP-SRGTETYGHITVTLQDVQELASY 865
T DFW+MV + +S IVM+T+ E+ R+KCD YWP + YG ITV + +E +
Sbjct: 106 TRNDFWKMVLQQKSQIIVMLTQCNEKRRVKCDHYWPFTEEPIAYGDITVEMISEEEQDDW 165
Query: 866 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAP--FLLFLRRVRAMNPGTNSLESS 923
R F IN E +++ +TAWPDHGVP A L F+ VR +
Sbjct: 166 ACRHFRINYA--DEMQDVMHFNYTAWPDHGVPTANAAESILQFVHMVRQQATKSK----- 218
Query: 924 GVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTED 983
GP+I+HCSAGVGRTG FI +D +++ I+ + VDI G V+ +R+ R MVQTE+
Sbjct: 219 ------GPMIIHCSAGVGRTGTFIALDRLLQHIRDHEFVDILGLVSEMRSYRMSMVQTEE 272
Query: 984 QYMFIHDAL 992
QY+FIH +
Sbjct: 273 QYIFIHQCV 281
Score = 105 bits (262), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 100/203 (49%), Gaps = 40/203 (19%)
Query: 1298 EFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFID 1357
+F++L I + F +A LP N+ KNR +ILP + SRV L + EG+DYINA++I
Sbjct: 30 QFEELKLIGLDIPHF-AADLPLNRCKNRYTNILPYDFSRVRLVSMNEEEGADYINANYIP 88
Query: 1358 GYRLRSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR--------------- 1402
GY YIATQGPL +T DFW+M+ + S I+VMLT+ E R
Sbjct: 89 GYNSPQEYIATQGPLPETRNDFWKMVLQQKSQIIVMLTQCNEKRRVKCDHYWPFTEEPIA 148
Query: 1403 ----------------YVLREFKVTDARDATSRTLRQFQLIDWPEQGVP--KSGDGFIDF 1444
+ R F++ A + + + F WP+ GVP + + + F
Sbjct: 149 YGDITVEMISEEEQDDWACRHFRINYADEM--QDVMHFNYTAWPDHGVPTANAAESILQF 206
Query: 1445 IGQVHKTKEQFGQD-GPITVHCS 1466
VH ++Q + GP+ +HCS
Sbjct: 207 ---VHMVRQQATKSKGPMIIHCS 226
Score = 88.2 bits (217), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 77/145 (53%), Gaps = 9/145 (6%)
Query: 1505 KCHQYWP-SERSIRYEWFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQLIDWPEQ 1563
KC YWP +E I Y VE I+E + R F++ A + + + F WP+
Sbjct: 135 KCDHYWPFTEEPIAYGDITVEMISEEEQDDWACRHFRINYADEM--QDVMHFNYTAWPDH 192
Query: 1564 GVP--KSGDGFIDFIGQVHKTKEQFGQD-GPITVHCSAGVGRTGVFITLSIVLERMQYEG 1620
GVP + + + F VH ++Q + GP+ +HCSAGVGRTG FI L +L+ ++
Sbjct: 193 GVPTANAAESILQF---VHMVRQQATKSKGPMIIHCSAGVGRTGTFIALDRLLQHIRDHE 249
Query: 1621 VIDLFQTVRILRTQRPAMVQTEHLY 1645
+D+ V +R+ R +MVQTE Y
Sbjct: 250 FVDILGLVSEMRSYRMSMVQTEEQY 274
Score = 77.4 bits (189), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 126/279 (45%), Gaps = 43/279 (15%)
Query: 511 DTSTGMELEFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLTPVRGDGFID 570
D+ L+F++L I + F +A LP N+ KNR +ILP + SRV L + + D
Sbjct: 22 DSDYKFSLQFEELKLIGLDIPHF-AADLPLNRCKNRYTNILPYDFSRVRLVSMNEEEGAD 80
Query: 571 FI------------------GQVHKTKEQFG-----QDGPITVHCSRLAQHIENLKANDN 607
+I G + +T+ F Q I V ++ + +K +
Sbjct: 81 YINANYIPGYNSPQEYIATQGPLPETRNDFWKMVLQQKSQIIVMLTQCNEK-RRVKCDHY 139
Query: 608 LKFSQE--------YESIEPGQQFTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVDGIP 659
F++E E I +Q W +N A + +V+ ++++ G+P
Sbjct: 140 WPFTEEPIAYGDITVEMISEEEQDDWACRHFRINYA-DEMQDVMHFNYT---AWPDHGVP 195
Query: 660 GRDGFIDFIGQVHKTKEQFGQD-GPITVHCSAGVGRTGVFITLSIVLERMQYEGVIDLFQ 718
+ + VH ++Q + GP+ +HCSAGVGRTG FI L +L+ ++ +D+
Sbjct: 196 TANAAESILQFVHMVRQQATKSKGPMIIHCSAGVGRTGTFIALDRLLQHIRDHEFVDILG 255
Query: 719 TVRILRTQRPAMVQTESIEPGQQFTWDHSSMEMNKAKNR 757
V +R+ R +MVQTE +Q+ + H +++ K +
Sbjct: 256 LVSEMRSYRMSMVQTE-----EQYIFIHQCVQLMWMKKK 289
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/21 (76%), Positives = 19/21 (90%)
Query: 1729 GPLIVHCSAGVGRTGCFIVID 1749
GP+I+HCSAGVGRTG FI +D
Sbjct: 219 GPMIIHCSAGVGRTGTFIALD 239
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 590 VHCSRLAQHIENLKANDNLKFSQEYESIEP-GQQFTWDHSSMEMNKAKNRYANVIAYDHS 648
V +I+++ + + KFS ++E ++ G + + +N+ KNRY N++ YD S
Sbjct: 7 VQLDDFDAYIKDMAKDSDYKFSLQFEELKLIGLDIPHFAADLPLNRCKNRYTNILPYDFS 66
Query: 649 RVILSTVDGIPGRDGF-IDFIGQVHKTKEQFGQDGPI 684
RV L +++ G D ++I + +E GP+
Sbjct: 67 RVRLVSMNEEEGADYINANYIPGYNSPQEYIATQGPL 103
>pdb|2AHS|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Tyrosine Receptor Phosphatase Beta
pdb|2AHS|B Chain B, Crystal Structure Of The Catalytic Domain Of Human
Tyrosine Receptor Phosphatase Beta
Length = 295
Score = 216 bits (551), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 120/301 (39%), Positives = 171/301 (56%), Gaps = 19/301 (6%)
Query: 191 GMVSHPPIPISRLAQHIENLKANDNLKFSQEYESIEP-GQQFTWDHSSMEMNKAKNRYAN 249
G + P IP ++ H L+A+ N S+EYE ++ G+ + D + + N+ KNRY N
Sbjct: 1 GPLGSPGIP-NQFEGHFMKLQADSNYLLSKEYEELKDVGRNQSCDIALLPENRGKNRYNN 59
Query: 250 VIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRS 309
++ YD +RV LS VD P SDYINA+Y G Y+ TQGPL T DFW+MVWE
Sbjct: 60 ILPYDATRVKLSNVDDDPCSDYINASYIPGNNFRREYIVTQGPLPGTKDDFWKMVWEQNV 119
Query: 310 VTIVMMTKLEERTRIKCDQYWPS-RGTETYGHITVTLQDVQELASYCIRTFMI-NKGADS 367
IVM+T+ E+ R+KCD YWP+ + + YG + + + L + IR F I +
Sbjct: 120 HNIVMVTQCVEKGRVKCDHYWPADQDSLYYGDLILQMLSESVLPEWTIREFKICGEEQLD 179
Query: 368 ERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAM---NPGTNSLESSGVNLPVGPLIVH 424
R I+ +T WPDHGVPE + F+R VR +PG GP +VH
Sbjct: 180 AHRLIRHFHYTVWPDHGVPETTQSLIQFVRTVRDYINRSPGA------------GPTVVH 227
Query: 425 CSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLEA 484
CSAGVGRTG FI +D +++++ +VDIYG V LR R +MVQTE QY+++H + +
Sbjct: 228 CSAGVGRTGTFIALDRILQQLDSKDSVDIYGAVHDLRLHRVHMVQTECQYVYLHQCVRDV 287
Query: 485 V 485
+
Sbjct: 288 L 288
Score = 202 bits (513), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 108/263 (41%), Positives = 151/263 (57%), Gaps = 17/263 (6%)
Query: 739 GQQFTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYV 798
G+ + D + + N+ KNRY N++ YD +RV LS VD P SDYINA+Y G Y+
Sbjct: 38 GRNQSCDIALLPENRGKNRYNNILPYDATRVKLSNVDDDPCSDYINASYIPGNNFRREYI 97
Query: 799 ATQGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPS-RGTETYGHITVTLQ 857
TQGPL T DFW+MVWE IVM+T+ E+ R+KCD YWP+ + + YG + + +
Sbjct: 98 VTQGPLPGTKDDFWKMVWEQNVHNIVMVTQCVEKGRVKCDHYWPADQDSLYYGDLILQML 157
Query: 858 DVQELASYCIRTFMI-NKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAM--- 913
L + IR F I + R I+ +T WPDHGVPE + F+R VR
Sbjct: 158 SESVLPEWTIREFKICGEEQLDAHRLIRHFHYTVWPDHGVPETTQSLIQFVRTVRDYINR 217
Query: 914 NPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRA 973
+PG GP +VHCSAGVGRTG FI +D +++++ +VDIYG V LR
Sbjct: 218 SPGA------------GPTVVHCSAGVGRTGTFIALDRILQQLDSKDSVDIYGAVHDLRL 265
Query: 974 QRNYMVQTEDQYMFIHDALLEAV 996
R +MVQTE QY+++H + + +
Sbjct: 266 HRVHMVQTECQYVYLHQCVRDVL 288
Score = 115 bits (287), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 98/201 (48%), Gaps = 33/201 (16%)
Query: 1298 EFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFID 1357
E+++L ++ S I A LP N+ KNR +ILP +++RV L+ V SDYINAS+I
Sbjct: 30 EYEELKDVGRNQSCDI-ALLPENRGKNRYNNILPYDATRVKLSNVDDDPCSDYINASYIP 88
Query: 1358 GYRLRSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR--------------- 1402
G R YI TQGPL T +DFW+M+WE N +VM+T+ E GR
Sbjct: 89 GNNFRREYIVTQGPLPGTKDDFWKMVWEQNVHNIVMVTQCVEKGRVKCDHYWPADQDSLY 148
Query: 1403 ----------------YVLREFKVTDARDATS-RTLRQFQLIDWPEQGVPKSGDGFIDFI 1445
+ +REFK+ + R +R F WP+ GVP++ I F+
Sbjct: 149 YGDLILQMLSESVLPEWTIREFKICGEEQLDAHRLIRHFHYTVWPDHGVPETTQSLIQFV 208
Query: 1446 GQVHKTKEQFGQDGPITVHCS 1466
V + GP VHCS
Sbjct: 209 RTVRDYINRSPGAGPTVVHCS 229
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 86/156 (55%), Gaps = 2/156 (1%)
Query: 1493 VLIAYLVLFSQEKCHQYWPSER-SIRYEWFVVEPIAEYNMPQYVLREFKVTDARDATS-R 1550
V++ V + KC YWP+++ S+ Y +++ ++E +P++ +REFK+ + R
Sbjct: 123 VMVTQCVEKGRVKCDHYWPADQDSLYYGDLILQMLSESVLPEWTIREFKICGEEQLDAHR 182
Query: 1551 TLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLS 1610
+R F WP+ GVP++ I F+ V + GP VHCSAGVGRTG FI L
Sbjct: 183 LIRHFHYTVWPDHGVPETTQSLIQFVRTVRDYINRSPGAGPTVVHCSAGVGRTGTFIALD 242
Query: 1611 IVLERMQYEGVIDLFQTVRILRTQRPAMVQTEHLYT 1646
+L+++ + +D++ V LR R MVQTE Y
Sbjct: 243 RILQQLDSKDSVDIYGAVHDLRLHRVHMVQTECQYV 278
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 73/265 (27%), Positives = 116/265 (43%), Gaps = 35/265 (13%)
Query: 500 HIQKLMSMEVGDTSTGMELEFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSRVC 559
H KL + D++ + E+++L ++ S I A LP N+ KNR +ILP +++RV
Sbjct: 15 HFMKLQA----DSNYLLSKEYEELKDVGRNQSCDI-ALLPENRGKNRYNNILPYDATRVK 69
Query: 560 LTPVRGDGFIDFIGQVHKTKEQFGQD-----GPI--------------TVH-CSRLAQHI 599
L+ V D D+I + F ++ GP+ VH + Q +
Sbjct: 70 LSNVDDDPCSDYINASYIPGNNFRREYIVTQGPLPGTKDDFWKMVWEQNVHNIVMVTQCV 129
Query: 600 ENLKANDNLKFSQEYESIEPGQ---QFTWDHSSMEMNKAKNRYANVIAYDHSRVILS--- 653
E + + + + +S+ G Q + E + + D R+I
Sbjct: 130 EKGRVKCDHYWPADQDSLYYGDLILQMLSESVLPEWTIREFKICGEEQLDAHRLIRHFHY 189
Query: 654 TV---DGIP-GRDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQ 709
TV G+P I F+ V + GP VHCSAGVGRTG FI L +L+++
Sbjct: 190 TVWPDHGVPETTQSLIQFVRTVRDYINRSPGAGPTVVHCSAGVGRTGTFIALDRILQQLD 249
Query: 710 YEGVIDLFQTVRILRTQRPAMVQTE 734
+ +D++ V LR R MVQTE
Sbjct: 250 SKDSVDIYGAVHDLRLHRVHMVQTE 274
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/22 (72%), Positives = 18/22 (81%)
Query: 1728 VGPLIVHCSAGVGRTGCFIVID 1749
GP +VHCSAGVGRTG FI +D
Sbjct: 221 AGPTVVHCSAGVGRTGTFIALD 242
>pdb|2H03|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2HC1|A Chain A, Engineered Catalytic Domain Of Protein Tyrosine
Phosphatase Hptpbeta.
pdb|2HC2|A Chain A, Engineered Protein Tyrosine Phosphatase Beta Catalytic
Domain
Length = 291
Score = 210 bits (535), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 117/295 (39%), Positives = 167/295 (56%), Gaps = 23/295 (7%)
Query: 197 PIPISRLAQHIENLKANDNLKFSQEYESIEP-GQQFTWDHSSMEMNKAKNRYANVIAYDH 255
PI I++ H L+A+ N S+EYE ++ G+ + D + + N+ KNRY N++ YD
Sbjct: 8 PIKINQFEGHFMKLQADSNYLLSKEYEELKDVGRNQSCDIALLPENRGKNRYNNILPYDA 67
Query: 256 SRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMM 315
+RV LS GSDYINA+Y G Y+ TQGPL T DFW+MVWE IVM+
Sbjct: 68 TRVKLSG-----GSDYINASYIPGNNFRREYIVTQGPLPGTKDDFWKMVWEQNVHNIVMV 122
Query: 316 TKLEERTRIKCDQYWPS-RGTETYGHITVTLQDVQELASYCIRTFMI-NKGADSERREIK 373
T+ E+ R+KCD YWP+ + + YG + + + L + IR F I + R I+
Sbjct: 123 TQCVEKGRVKCDHYWPADQDSLYYGDLILQMLSESVLPEWTIREFKICGEEQLDAHRLIR 182
Query: 374 QLQFTAWPDHGVPEHPAPFLLFLRRVRAM---NPGTNSLESSGVNLPVGPLIVHCSAGVG 430
+T WPDHGVPE + F+R VR +PG GP +VHCSAGVG
Sbjct: 183 HFHYTVWPDHGVPETTQSLIQFVRTVRDYINRSPGA------------GPTVVHCSAGVG 230
Query: 431 RTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLEAV 485
RTG FI +D +++++ +VDIYG V LR R +MVQTE QY+++H + + +
Sbjct: 231 RTGTFIALDRILQQLDSKDSVDIYGAVHDLRLHRVHMVQTECQYVYLHQCVRDVL 285
Score = 192 bits (489), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 106/263 (40%), Positives = 149/263 (56%), Gaps = 22/263 (8%)
Query: 739 GQQFTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYV 798
G+ + D + + N+ KNRY N++ YD +RV LS GSDYINA+Y G Y+
Sbjct: 40 GRNQSCDIALLPENRGKNRYNNILPYDATRVKLSG-----GSDYINASYIPGNNFRREYI 94
Query: 799 ATQGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPS-RGTETYGHITVTLQ 857
TQGPL T DFW+MVWE IVM+T+ E+ R+KCD YWP+ + + YG + + +
Sbjct: 95 VTQGPLPGTKDDFWKMVWEQNVHNIVMVTQCVEKGRVKCDHYWPADQDSLYYGDLILQML 154
Query: 858 DVQELASYCIRTFMI-NKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAM--- 913
L + IR F I + R I+ +T WPDHGVPE + F+R VR
Sbjct: 155 SESVLPEWTIREFKICGEEQLDAHRLIRHFHYTVWPDHGVPETTQSLIQFVRTVRDYINR 214
Query: 914 NPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRA 973
+PG GP +VHCSAGVGRTG FI +D +++++ +VDIYG V LR
Sbjct: 215 SPGA------------GPTVVHCSAGVGRTGTFIALDRILQQLDSKDSVDIYGAVHDLRL 262
Query: 974 QRNYMVQTEDQYMFIHDALLEAV 996
R +MVQTE QY+++H + + +
Sbjct: 263 HRVHMVQTECQYVYLHQCVRDVL 285
Score = 113 bits (282), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 98/201 (48%), Gaps = 38/201 (18%)
Query: 1298 EFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFID 1357
E+++L ++ S I A LP N+ KNR +ILP +++RV L+ GSDYINAS+I
Sbjct: 32 EYEELKDVGRNQSCDI-ALLPENRGKNRYNNILPYDATRVKLSG-----GSDYINASYIP 85
Query: 1358 GYRLRSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR--------------- 1402
G R YI TQGPL T +DFW+M+WE N +VM+T+ E GR
Sbjct: 86 GNNFRREYIVTQGPLPGTKDDFWKMVWEQNVHNIVMVTQCVEKGRVKCDHYWPADQDSLY 145
Query: 1403 ----------------YVLREFKVTDARDATS-RTLRQFQLIDWPEQGVPKSGDGFIDFI 1445
+ +REFK+ + R +R F WP+ GVP++ I F+
Sbjct: 146 YGDLILQMLSESVLPEWTIREFKICGEEQLDAHRLIRHFHYTVWPDHGVPETTQSLIQFV 205
Query: 1446 GQVHKTKEQFGQDGPITVHCS 1466
V + GP VHCS
Sbjct: 206 RTVRDYINRSPGAGPTVVHCS 226
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 86/156 (55%), Gaps = 2/156 (1%)
Query: 1493 VLIAYLVLFSQEKCHQYWPSER-SIRYEWFVVEPIAEYNMPQYVLREFKVTDARDATS-R 1550
V++ V + KC YWP+++ S+ Y +++ ++E +P++ +REFK+ + R
Sbjct: 120 VMVTQCVEKGRVKCDHYWPADQDSLYYGDLILQMLSESVLPEWTIREFKICGEEQLDAHR 179
Query: 1551 TLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLS 1610
+R F WP+ GVP++ I F+ V + GP VHCSAGVGRTG FI L
Sbjct: 180 LIRHFHYTVWPDHGVPETTQSLIQFVRTVRDYINRSPGAGPTVVHCSAGVGRTGTFIALD 239
Query: 1611 IVLERMQYEGVIDLFQTVRILRTQRPAMVQTEHLYT 1646
+L+++ + +D++ V LR R MVQTE Y
Sbjct: 240 RILQQLDSKDSVDIYGAVHDLRLHRVHMVQTECQYV 275
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 116/262 (44%), Gaps = 34/262 (12%)
Query: 500 HIQKLMSMEVGDTSTGMELEFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSRVC 559
H KL + D++ + E+++L ++ S I A LP N+ KNR +ILP +++RV
Sbjct: 17 HFMKLQA----DSNYLLSKEYEELKDVGRNQSCDI-ALLPENRGKNRYNNILPYDATRVK 71
Query: 560 LTPVRGDGFID--FIGQVHKTKEQFGQDGPI--------------TVH-CSRLAQHIENL 602
L+ G +I+ +I + +E GP+ VH + Q +E
Sbjct: 72 LSG--GSDYINASYIPGNNFRREYIVTQGPLPGTKDDFWKMVWEQNVHNIVMVTQCVEKG 129
Query: 603 KANDNLKFSQEYESIEPGQ---QFTWDHSSMEMNKAKNRYANVIAYDHSRVILS---TV- 655
+ + + + +S+ G Q + E + + D R+I TV
Sbjct: 130 RVKCDHYWPADQDSLYYGDLILQMLSESVLPEWTIREFKICGEEQLDAHRLIRHFHYTVW 189
Query: 656 --DGIP-GRDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEG 712
G+P I F+ V + GP VHCSAGVGRTG FI L +L+++ +
Sbjct: 190 PDHGVPETTQSLIQFVRTVRDYINRSPGAGPTVVHCSAGVGRTGTFIALDRILQQLDSKD 249
Query: 713 VIDLFQTVRILRTQRPAMVQTE 734
+D++ V LR R MVQTE
Sbjct: 250 SVDIYGAVHDLRLHRVHMVQTE 271
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/22 (72%), Positives = 18/22 (81%)
Query: 1728 VGPLIVHCSAGVGRTGCFIVID 1749
GP +VHCSAGVGRTG FI +D
Sbjct: 218 AGPTVVHCSAGVGRTGTFIALD 239
>pdb|1P15|A Chain A, Crystal Structure Of The D2 Domain Of Rptpa
pdb|1P15|B Chain B, Crystal Structure Of The D2 Domain Of Rptpa
Length = 253
Score = 209 bits (533), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 99/245 (40%), Positives = 151/245 (61%), Gaps = 10/245 (4%)
Query: 241 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 300
N KNR +I Y+ +RVI+ G +DY+NA++ DGYR+ ++Y+A+QGPL T+ DF
Sbjct: 9 NMKKNRVLQIIPYEFNRVIIPVKRGEENTDYVNASFIDGYRQKDSYIASQGPLLHTIEDF 68
Query: 301 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYCIRTFM 360
WRM+WE +S +IVM+T+LEER + KC QYWPS G +YG ITV L+ +E SY +R +
Sbjct: 69 WRMIWEWKSCSIVMLTELEERGQEKCAQYWPSDGLVSYGDITVELKKEEECESYTVRDLL 128
Query: 361 INKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGP 420
+ +++ R+I+Q F WP+ G+P + + V+ + SG + P
Sbjct: 129 VTNTRENKSRQIRQFHFHGWPEVGIPSDGKGMINIIAAVQKQQ------QQSGNH----P 178
Query: 421 LIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDA 480
+ VHCSAG GRTG F + ++ER+K + +D++ V LR QR +MVQT +QY F +
Sbjct: 179 ITVHCSAGAGRTGTFCALSTVLERVKAEGILDVFQTVKSLRLQRPHMVQTLEQYEFCYKV 238
Query: 481 LLEAV 485
+ E +
Sbjct: 239 VQEYI 243
Score = 209 bits (533), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 99/245 (40%), Positives = 151/245 (61%), Gaps = 10/245 (4%)
Query: 752 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 811
N KNR +I Y+ +RVI+ G +DY+NA++ DGYR+ ++Y+A+QGPL T+ DF
Sbjct: 9 NMKKNRVLQIIPYEFNRVIIPVKRGEENTDYVNASFIDGYRQKDSYIASQGPLLHTIEDF 68
Query: 812 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYCIRTFM 871
WRM+WE +S +IVM+T+LEER + KC QYWPS G +YG ITV L+ +E SY +R +
Sbjct: 69 WRMIWEWKSCSIVMLTELEERGQEKCAQYWPSDGLVSYGDITVELKKEEECESYTVRDLL 128
Query: 872 INKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGP 931
+ +++ R+I+Q F WP+ G+P + + V+ + SG + P
Sbjct: 129 VTNTRENKSRQIRQFHFHGWPEVGIPSDGKGMINIIAAVQKQQ------QQSGNH----P 178
Query: 932 LIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDA 991
+ VHCSAG GRTG F + ++ER+K + +D++ V LR QR +MVQT +QY F +
Sbjct: 179 ITVHCSAGAGRTGTFCALSTVLERVKAEGILDVFQTVKSLRLQRPHMVQTLEQYEFCYKV 238
Query: 992 LLEAV 996
+ E +
Sbjct: 239 VQEYI 243
Score = 155 bits (393), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 79/183 (43%), Positives = 106/183 (57%), Gaps = 31/183 (16%)
Query: 1314 SASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFIDGYRLRSAYIATQGPLA 1373
+ +LP N KNR++ I+P E +RV + RG E +DY+NASFIDGYR + +YIA+QGPL
Sbjct: 3 TGNLPANMKKNRVLQIIPYEFNRVIIPVKRGEENTDYVNASFIDGYRQKDSYIASQGPLL 62
Query: 1374 DTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------------------------Y 1403
T EDFWRM+WE S +VMLT+L+E G+ Y
Sbjct: 63 HTIEDFWRMIWEWKSCSIVMLTELEERGQEKCAQYWPSDGLVSYGDITVELKKEEECESY 122
Query: 1404 VLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITV 1463
+R+ VT+ R+ SR +RQF WPE G+P G G I+ I V K ++Q G + PITV
Sbjct: 123 TVRDLLVTNTRENKSRQIRQFHFHGWPEVGIPSDGKGMINIIAAVQKQQQQSG-NHPITV 181
Query: 1464 HCS 1466
HCS
Sbjct: 182 HCS 184
Score = 148 bits (374), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/156 (49%), Positives = 97/156 (62%), Gaps = 2/156 (1%)
Query: 1491 CS-VLIAYLVLFSQEKCHQYWPSERSIRYEWFVVEPIAEYNMPQYVLREFKVTDARDATS 1549
CS V++ L QEKC QYWPS+ + Y VE E Y +R+ VT+ R+ S
Sbjct: 78 CSIVMLTELEERGQEKCAQYWPSDGLVSYGDITVELKKEEECESYTVRDLLVTNTRENKS 137
Query: 1550 RTLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITL 1609
R +RQF WPE G+P G G I+ I V K ++Q G + PITVHCSAG GRTG F L
Sbjct: 138 RQIRQFHFHGWPEVGIPSDGKGMINIIAAVQKQQQQSG-NHPITVHCSAGAGRTGTFCAL 196
Query: 1610 SIVLERMQYEGVIDLFQTVRILRTQRPAMVQTEHLY 1645
S VLER++ EG++D+FQTV+ LR QRP MVQT Y
Sbjct: 197 STVLERVKAEGILDVFQTVKSLRLQRPHMVQTLEQY 232
Score = 95.5 bits (236), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 112/227 (49%), Gaps = 29/227 (12%)
Query: 535 SASLPCNKHKNRLVHILPVESSRVCLTPVRGDGFIDFIGQV----HKTKEQF-GQDGPIT 589
+ +LP N KNR++ I+P E +RV + RG+ D++ ++ K+ + GP+
Sbjct: 3 TGNLPANMKKNRVLQIIPYEFNRVIIPVKRGEENTDYVNASFIDGYRQKDSYIASQGPLL 62
Query: 590 VHCSRLAQHIENLKANDNLKFSQ-EYESIEPGQQF-------TWDHSSMEMNK------- 634
+ I K+ + ++ E E Q+ ++ ++E+ K
Sbjct: 63 HTIEDFWRMIWEWKSCSIVMLTELEERGQEKCAQYWPSDGLVSYGDITVELKKEEECESY 122
Query: 635 -AKNRYANVIAYDHSRVILST------VDGIPGR-DGFIDFIGQVHKTKEQFGQDGPITV 686
++ + SR I GIP G I+ I V K ++Q G + PITV
Sbjct: 123 TVRDLLVTNTRENKSRQIRQFHFHGWPEVGIPSDGKGMINIIAAVQKQQQQSG-NHPITV 181
Query: 687 HCSAGVGRTGVFITLSIVLERMQYEGVIDLFQTVRILRTQRPAMVQT 733
HCSAG GRTG F LS VLER++ EG++D+FQTV+ LR QRP MVQT
Sbjct: 182 HCSAGAGRTGTFCALSTVLERVKAEGILDVFQTVKSLRLQRPHMVQT 228
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 30/74 (40%)
Query: 1730 PLIVHCSAGVGRTGCFI------------------------------VIDAKEQYQFCYH 1759
P+ VHCSAG GRTG F ++ EQY+FCY
Sbjct: 178 PITVHCSAGAGRTGTFCALSTVLERVKAEGILDVFQTVKSLRLQRPHMVQTLEQYEFCYK 237
Query: 1760 AALEYLGSFDHYTN 1773
EY+ +F Y N
Sbjct: 238 VVQEYIDAFSDYAN 251
>pdb|2PA5|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9
pdb|2PA5|B Chain B, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9
pdb|4GE2|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9 (Meg2) Complex With Compound 3
pdb|4GE2|B Chain B, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9 (Meg2) Complex With Compound 3
pdb|4GE5|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9 (Meg2) Complex With Compound 5
pdb|4GE5|B Chain B, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9 (Meg2) Complex With Compound 5
pdb|4GE6|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9 (Meg2) Complex With Compound 7
pdb|4GE6|B Chain B, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9 (Meg2) Complex With Compound 7
Length = 314
Score = 207 bits (526), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 113/298 (37%), Positives = 164/298 (55%), Gaps = 6/298 (2%)
Query: 192 MVSHPPIPISRLAQH-IENLKANDNLKFSQEYESIEPGQQFTWDHSSME-MNKAKNRYAN 249
M H P P + Q ++ + A +EYE I H SM N KNRY +
Sbjct: 1 MSVHVPGPHAMTIQELVDYVNARQKQGIYEEYEDIRRENPVGTFHCSMSPGNLEKNRYGD 60
Query: 250 VIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRS 309
V D +RV L+ G +DYINA++ DGY++ NAY+ TQGPL+ T DFW MVWE +
Sbjct: 61 VPCLDQTRVKLTKRSGHTQTDYINASFMDGYKQKNAYIGTQGPLENTYRDFWLMVWEQKV 120
Query: 310 VTIVMMTKLEERTRIKCDQYWPSRGTE--TYGHITVTLQDVQELASYCIRTFMINKGADS 367
+ IVM T+ EE R KC QYWP +G +TVT V+ + Y T I+ +
Sbjct: 121 LVIVMTTRFEEGGRRKCGQYWPLEKDSRIRFGFLTVTNLGVENMNHYKKTTLEIHNTEER 180
Query: 368 ERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMN--PGTNSLESSGVNLPVGPLIVHC 425
++R++ QF +WPD+GVP A + FLR VR +N S P P++VHC
Sbjct: 181 QKRQVTHFQFLSWPDYGVPSSAASLIDFLRVVRNQQSLAVSNMGARSKGQCPEPPIVVHC 240
Query: 426 SAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLE 483
SAG+GRTG F +D + +++ T++++ V+ +R QR + +QT +QY F + A+LE
Sbjct: 241 SAGIGRTGTFCSLDICLAQLEELGTLNVFQTVSRMRTQRAFSIQTPEQYYFCYKAILE 298
Score = 201 bits (512), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 103/254 (40%), Positives = 149/254 (58%), Gaps = 5/254 (1%)
Query: 746 HSSME-MNKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPL 804
H SM N KNRY +V D +RV L+ G +DYINA++ DGY++ NAY+ TQGPL
Sbjct: 45 HCSMSPGNLEKNRYGDVPCLDQTRVKLTKRSGHTQTDYINASFMDGYKQKNAYIGTQGPL 104
Query: 805 QETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTE--TYGHITVTLQDVQEL 862
+ T DFW MVWE + + IVM T+ EE R KC QYWP +G +TVT V+ +
Sbjct: 105 ENTYRDFWLMVWEQKVLVIVMTTRFEEGGRRKCGQYWPLEKDSRIRFGFLTVTNLGVENM 164
Query: 863 ASYCIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMN--PGTNSL 920
Y T I+ + ++R++ QF +WPD+GVP A + FLR VR +N
Sbjct: 165 NHYKKTTLEIHNTEERQKRQVTHFQFLSWPDYGVPSSAASLIDFLRVVRNQQSLAVSNMG 224
Query: 921 ESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQ 980
S P P++VHCSAG+GRTG F +D + +++ T++++ V+ +R QR + +Q
Sbjct: 225 ARSKGQCPEPPIVVHCSAGIGRTGTFCSLDICLAQLEELGTLNVFQTVSRMRTQRAFSIQ 284
Query: 981 TEDQYMFIHDALLE 994
T +QY F + A+LE
Sbjct: 285 TPEQYYFCYKAILE 298
Score = 108 bits (270), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 103/233 (44%), Gaps = 53/233 (22%)
Query: 1299 FKKLSNIRAEP--SRFISASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFI 1356
+++ +IR E F + P N KNR + ++ +RV LT G +DYINASF+
Sbjct: 29 YEEYEDIRRENPVGTFHCSMSPGNLEKNRYGDVPCLDQTRVKLTKRSGHTQTDYINASFM 88
Query: 1357 DGYRLRSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR-------------- 1402
DGY+ ++AYI TQGPL +T DFW M+WE ++VM T+ +E GR
Sbjct: 89 DGYKQKNAYIGTQGPLENTYRDFWLMVWEQKVLVIVMTTRFEEGGRRKCGQYWPLEKDSR 148
Query: 1403 ------------------YVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDF 1444
Y ++ + + R + FQ + WP+ GVP S IDF
Sbjct: 149 IRFGFLTVTNLGVENMNHYKKTTLEIHNTEERQKRQVTHFQFLSWPDYGVPSSAASLIDF 208
Query: 1445 IGQVHKTK---------EQFGQ--DGPITVHCS--------LLSLHINLTQSE 1478
+ V + GQ + PI VHCS SL I L Q E
Sbjct: 209 LRVVRNQQSLAVSNMGARSKGQCPEPPIVVHCSAGIGRTGTFCSLDICLAQLE 261
Score = 103 bits (256), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 81/157 (51%), Gaps = 13/157 (8%)
Query: 1502 SQEKCHQYWPSERS--IRYEWFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQLID 1559
+ KC QYWP E+ IR+ + V + NM Y ++ + + R + FQ +
Sbjct: 133 GRRKCGQYWPLEKDSRIRFGFLTVTNLGVENMNHYKKTTLEIHNTEERQKRQVTHFQFLS 192
Query: 1560 WPEQGVPKSGDGFIDFIGQVHKTK---------EQFGQ--DGPITVHCSAGVGRTGVFIT 1608
WP+ GVP S IDF+ V + GQ + PI VHCSAG+GRTG F +
Sbjct: 193 WPDYGVPSSAASLIDFLRVVRNQQSLAVSNMGARSKGQCPEPPIVVHCSAGIGRTGTFCS 252
Query: 1609 LSIVLERMQYEGVIDLFQTVRILRTQRPAMVQTEHLY 1645
L I L +++ G +++FQTV +RTQR +QT Y
Sbjct: 253 LDICLAQLEELGTLNVFQTVSRMRTQRAFSIQTPEQY 289
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 37/51 (72%)
Query: 683 PITVHCSAGVGRTGVFITLSIVLERMQYEGVIDLFQTVRILRTQRPAMVQT 733
PI VHCSAG+GRTG F +L I L +++ G +++FQTV +RTQR +QT
Sbjct: 235 PIVVHCSAGIGRTGTFCSLDICLAQLEELGTLNVFQTVSRMRTQRAFSIQT 285
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 30/68 (44%)
Query: 1727 PVGPLIVHCSAGVGRTGCFIVID------------------------------AKEQYQF 1756
P P++VHCSAG+GRTG F +D EQY F
Sbjct: 232 PEPPIVVHCSAGIGRTGTFCSLDICLAQLEELGTLNVFQTVSRMRTQRAFSIQTPEQYYF 291
Query: 1757 CYHAALEY 1764
CY A LE+
Sbjct: 292 CYKAILEF 299
>pdb|3PS5|A Chain A, Crystal Structure Of The Full-Length Human Protein
Tyrosine Phosphatase Shp-1
Length = 595
Score = 198 bits (503), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 133/356 (37%), Positives = 185/356 (51%), Gaps = 42/356 (11%)
Query: 218 FSQEYESIEPGQQFTWDHSSME----MNKAKNRYANVIAYDHSRVILSTVD-GIPGSDYI 272
F +E+ES++ Q+ H +E NK KNRY N++ +DHSRVIL D IPGSDYI
Sbjct: 244 FWEEFESLQK-QEVKNLHQRLEGQRPENKGKNRYKNILPFDHSRVILQGRDSNIPGSDYI 302
Query: 273 NANYCDGY-----RKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCD 327
NANY Y+A+QG L+ T+ DFW+M W+ S IVM T+ E+ R KC
Sbjct: 303 NANYIKNQLLGPDENAKTYIASQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCV 362
Query: 328 QYWPSRGTE-TYGHITVTLQDVQELASYCIRTFMINKGADSER-REIKQLQFTAWPDHGV 385
YWP G + YG +VT + Y +RT ++ + + REI Q+ +WPDHGV
Sbjct: 363 PYWPEVGMQRAYGPYSVTNCGEHDTTEYKLRTLQVSPLDNGDLIREIWHYQYLSWPDHGV 422
Query: 386 PEHPAPFLLFLRRVRAMNPGTNSLESSGVNLP-VGPLIVHCSAGVGRTGCFIVIDAMIER 444
P P L FL ++ N + S LP GP+IVH SAG+GRTG IVID ++E
Sbjct: 423 PSEPGGVLSFLDQI-------NQRQES---LPHAGPIIVHSSAGIGRTGTIIVIDMLMEN 472
Query: 445 IKH---DKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLEAVLCGNTEIPARSLHVHI 501
I D +DI + +RAQR+ MVQTE QY FI+ A+ + + E + L
Sbjct: 473 ISTKGLDCDIDIQKTIQMVRAQRSGMVQTEAQYKFIYVAIAQFI-----ETTKKKL---- 523
Query: 502 QKLMSMEVGDTSTGMELEFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSR 557
EV + G E E+ ++ A + AS +KHK + L ++ R
Sbjct: 524 ------EVLQSQKGQESEYGNITYPPAMKNAHAKASRTSSKHKEDVYENLHTKNKR 573
Score = 191 bits (484), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 111/257 (43%), Positives = 147/257 (57%), Gaps = 22/257 (8%)
Query: 752 NKAKNRYANVIAYDHSRVILSTVD-GIPGSDYINANYCDGY-----RKHNAYVATQGPLQ 805
NK KNRY N++ +DHSRVIL D IPGSDYINANY Y+A+QG L+
Sbjct: 270 NKGKNRYKNILPFDHSRVILQGRDSNIPGSDYINANYIKNQLLGPDENAKTYIASQGCLE 329
Query: 806 ETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTE-TYGHITVTLQDVQELAS 864
T+ DFW+M W+ S IVM T+ E+ R KC YWP G + YG +VT +
Sbjct: 330 ATVNDFWQMAWQENSRVIVMTTREVEKGRNKCVPYWPEVGMQRAYGPYSVTNCGEHDTTE 389
Query: 865 YCIRTFMINKGADSER-REIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESS 923
Y +RT ++ + + REI Q+ +WPDHGVP P L FL ++ N + S
Sbjct: 390 YKLRTLQVSPLDNGDLIREIWHYQYLSWPDHGVPSEPGGVLSFLDQI-------NQRQES 442
Query: 924 GVNLP-VGPLIVHCSAGVGRTGCFIVIDAMIERIKH---DKTVDIYGHVTCLRAQRNYMV 979
LP GP+IVH SAG+GRTG IVID ++E I D +DI + +RAQR+ MV
Sbjct: 443 ---LPHAGPIIVHSSAGIGRTGTIIVIDMLMENISTKGLDCDIDIQKTIQMVRAQRSGMV 499
Query: 980 QTEDQYMFIHDALLEAV 996
QTE QY FI+ A+ + +
Sbjct: 500 QTEAQYKFIYVAIAQFI 516
Score = 100 bits (250), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 89/193 (46%), Gaps = 40/193 (20%)
Query: 1313 ISASLPCNKHKNRLVHILPVESSRVCLTPV-RGIEGSDYINASFIDGYRL-----RSAYI 1366
+ P NK KNR +ILP + SRV L I GSDYINA++I L YI
Sbjct: 263 LEGQRPENKGKNRYKNILPFDHSRVILQGRDSNIPGSDYINANYIKNQLLGPDENAKTYI 322
Query: 1367 ATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------------------ 1402
A+QG L T DFW+M W+ NS ++VM T+ E GR
Sbjct: 323 ASQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCVPYWPEVGMQRAYGPYSVTNC 382
Query: 1403 -------YVLREFKVT--DARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKE 1453
Y LR +V+ D D R + +Q + WP+ GVP G + F+ Q+++ +E
Sbjct: 383 GEHDTTEYKLRTLQVSPLDNGDLI-REIWHYQYLSWPDHGVPSEPGGVLSFLDQINQRQE 441
Query: 1454 QFGQDGPITVHCS 1466
GPI VH S
Sbjct: 442 SLPHAGPIIVHSS 454
Score = 97.8 bits (242), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 87/159 (54%), Gaps = 7/159 (4%)
Query: 1493 VLIAYLVLFSQEKCHQYWPSERSIR-YEWFVVEPIAEYNMPQYVLREFKVT--DARDATS 1549
V+ V + KC YWP R Y + V E++ +Y LR +V+ D D
Sbjct: 348 VMTTREVEKGRNKCVPYWPEVGMQRAYGPYSVTNCGEHDTTEYKLRTLQVSPLDNGDLI- 406
Query: 1550 RTLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITL 1609
R + +Q + WP+ GVP G + F+ Q+++ +E GPI VH SAG+GRTG I +
Sbjct: 407 REIWHYQYLSWPDHGVPSEPGGVLSFLDQINQRQESLPHAGPIIVHSSAGIGRTGTIIVI 466
Query: 1610 SIVLERMQYEGV---IDLFQTVRILRTQRPAMVQTEHLY 1645
+++E + +G+ ID+ +T++++R QR MVQTE Y
Sbjct: 467 DMLMENISTKGLDCDIDIQKTIQMVRAQRSGMVQTEAQY 505
Score = 71.2 bits (173), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 85/368 (23%), Positives = 145/368 (39%), Gaps = 68/368 (18%)
Query: 413 GVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTED 472
G L V + V C G G D++ + ++H K I +
Sbjct: 159 GSPLRVTHIKVMCEGGRYTVGGLETFDSLTDLVEHFKKTGI--------------EEASG 204
Query: 473 QYMFIHDALLEAVLCGNTEIPARSLHVHIQKLMSMEVGDTS-TGMELEFKKLSNIRAEP- 530
++++ A +I R L ++ ++ E DT+ G EF+ L +
Sbjct: 205 AFVYLRQPYY-ATRVNAADIENRVLELNKKQ----ESEDTAKAGFWEEFESLQKQEVKNL 259
Query: 531 SRFISASLPCNKHKNRLVHILPVESSRVCLTPVRGDGFI---DFIGQVHKTKEQFGQDGP 587
+ + P NK KNR +ILP + SRV L D I D+I + + G D
Sbjct: 260 HQRLEGQRPENKGKNRYKNILPFDHSRVILQGR--DSNIPGSDYINANYIKNQLLGPDEN 317
Query: 588 ITVHCSRLAQHIENLKANDNLKFSQEYES---------IEPGQQFT---WDHSSMEMNKA 635
+ + +Q ND + + + S +E G+ W M+
Sbjct: 318 AKTYIA--SQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCVPYWPEVGMQRAYG 375
Query: 636 KNRYANVIAYDHSRVILSTVD------------------------GIPGR-DGFIDFIGQ 670
N +D + L T+ G+P G + F+ Q
Sbjct: 376 PYSVTNCGEHDTTEYKLRTLQVSPLDNGDLIREIWHYQYLSWPDHGVPSEPGGVLSFLDQ 435
Query: 671 VHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGV---IDLFQTVRILRTQR 727
+++ +E GPI VH SAG+GRTG I + +++E + +G+ ID+ +T++++R QR
Sbjct: 436 INQRQESLPHAGPIIVHSSAGIGRTGTIIVIDMLMENISTKGLDCDIDIQKTIQMVRAQR 495
Query: 728 PAMVQTES 735
MVQTE+
Sbjct: 496 SGMVQTEA 503
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 21/26 (80%), Gaps = 1/26 (3%)
Query: 1725 NLP-VGPLIVHCSAGVGRTGCFIVID 1749
+LP GP+IVH SAG+GRTG IVID
Sbjct: 442 SLPHAGPIIVHSSAGIGRTGTIIVID 467
>pdb|2B3O|A Chain A, Crystal Structure Of Human Tyrosine Phosphatase Shp-1
Length = 532
Score = 196 bits (499), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 119/284 (41%), Positives = 161/284 (56%), Gaps = 27/284 (9%)
Query: 218 FSQEYESIEPGQQFTWDHSSME----MNKAKNRYANVIAYDHSRVILSTVD-GIPGSDYI 272
F +E+ES++ Q+ H +E NK KNRY N++ +DHSRVIL D IPGSDYI
Sbjct: 244 FWEEFESLQK-QEVKNLHQRLEGQRPENKGKNRYKNILPFDHSRVILQGRDSNIPGSDYI 302
Query: 273 NANYCDGY-----RKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCD 327
NANY Y+A+QG L+ T+ DFW+M W+ S IVM T+ E+ R KC
Sbjct: 303 NANYIKNQLLGPDENAKTYIASQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCV 362
Query: 328 QYWPSRGTE-TYGHITVTLQDVQELASYCIRTFMINKGADSER-REIKQLQFTAWPDHGV 385
YWP G + YG +VT + Y +RT ++ + + REI Q+ +WPDHGV
Sbjct: 363 PYWPEVGMQRAYGPYSVTNCGEHDTTEYKLRTLQVSPLDNGDLIREIWHYQYLSWPDHGV 422
Query: 386 PEHPAPFLLFLRRVRAMNPGTNSLESSGVNLP-VGPLIVHCSAGVGRTGCFIVIDAMIER 444
P P L FL ++ N + S LP GP+IVHCSAG+GRTG IVID ++E
Sbjct: 423 PSEPGGVLSFLDQI-------NQRQES---LPHAGPIIVHCSAGIGRTGTIIVIDMLMEN 472
Query: 445 IKH---DKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLEAV 485
I D +DI + +RAQR+ MVQTE QY FI+ A+ + +
Sbjct: 473 ISTKGLDCDIDIQKTIQMVRAQRSGMVQTEAQYKFIYVAIAQFI 516
Score = 193 bits (491), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 112/257 (43%), Positives = 148/257 (57%), Gaps = 22/257 (8%)
Query: 752 NKAKNRYANVIAYDHSRVILSTVD-GIPGSDYINANYCDGY-----RKHNAYVATQGPLQ 805
NK KNRY N++ +DHSRVIL D IPGSDYINANY Y+A+QG L+
Sbjct: 270 NKGKNRYKNILPFDHSRVILQGRDSNIPGSDYINANYIKNQLLGPDENAKTYIASQGCLE 329
Query: 806 ETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTE-TYGHITVTLQDVQELAS 864
T+ DFW+M W+ S IVM T+ E+ R KC YWP G + YG +VT +
Sbjct: 330 ATVNDFWQMAWQENSRVIVMTTREVEKGRNKCVPYWPEVGMQRAYGPYSVTNCGEHDTTE 389
Query: 865 YCIRTFMINKGADSER-REIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESS 923
Y +RT ++ + + REI Q+ +WPDHGVP P L FL ++ N + S
Sbjct: 390 YKLRTLQVSPLDNGDLIREIWHYQYLSWPDHGVPSEPGGVLSFLDQI-------NQRQES 442
Query: 924 GVNLP-VGPLIVHCSAGVGRTGCFIVIDAMIERIKH---DKTVDIYGHVTCLRAQRNYMV 979
LP GP+IVHCSAG+GRTG IVID ++E I D +DI + +RAQR+ MV
Sbjct: 443 ---LPHAGPIIVHCSAGIGRTGTIIVIDMLMENISTKGLDCDIDIQKTIQMVRAQRSGMV 499
Query: 980 QTEDQYMFIHDALLEAV 996
QTE QY FI+ A+ + +
Sbjct: 500 QTEAQYKFIYVAIAQFI 516
Score = 103 bits (258), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 90/193 (46%), Gaps = 40/193 (20%)
Query: 1313 ISASLPCNKHKNRLVHILPVESSRVCLTPV-RGIEGSDYINASFIDGYRL-----RSAYI 1366
+ P NK KNR +ILP + SRV L I GSDYINA++I L YI
Sbjct: 263 LEGQRPENKGKNRYKNILPFDHSRVILQGRDSNIPGSDYINANYIKNQLLGPDENAKTYI 322
Query: 1367 ATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------------------ 1402
A+QG L T DFW+M W+ NS ++VM T+ E GR
Sbjct: 323 ASQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCVPYWPEVGMQRAYGPYSVTNC 382
Query: 1403 -------YVLREFKVT--DARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKE 1453
Y LR +V+ D D R + +Q + WP+ GVP G + F+ Q+++ +E
Sbjct: 383 GEHDTTEYKLRTLQVSPLDNGDLI-REIWHYQYLSWPDHGVPSEPGGVLSFLDQINQRQE 441
Query: 1454 QFGQDGPITVHCS 1466
GPI VHCS
Sbjct: 442 SLPHAGPIIVHCS 454
Score = 100 bits (250), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 88/159 (55%), Gaps = 7/159 (4%)
Query: 1493 VLIAYLVLFSQEKCHQYWPSERSIR-YEWFVVEPIAEYNMPQYVLREFKVT--DARDATS 1549
V+ V + KC YWP R Y + V E++ +Y LR +V+ D D
Sbjct: 348 VMTTREVEKGRNKCVPYWPEVGMQRAYGPYSVTNCGEHDTTEYKLRTLQVSPLDNGDLI- 406
Query: 1550 RTLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITL 1609
R + +Q + WP+ GVP G + F+ Q+++ +E GPI VHCSAG+GRTG I +
Sbjct: 407 REIWHYQYLSWPDHGVPSEPGGVLSFLDQINQRQESLPHAGPIIVHCSAGIGRTGTIIVI 466
Query: 1610 SIVLERMQYEGV---IDLFQTVRILRTQRPAMVQTEHLY 1645
+++E + +G+ ID+ +T++++R QR MVQTE Y
Sbjct: 467 DMLMENISTKGLDCDIDIQKTIQMVRAQRSGMVQTEAQY 505
Score = 74.7 bits (182), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 85/369 (23%), Positives = 147/369 (39%), Gaps = 70/369 (18%)
Query: 413 GVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTED 472
G L V + V C G G D++ + ++H K I +
Sbjct: 159 GSPLRVTHIKVMCEGGRYTVGGLETFDSLTDLVEHFKKTGIE--------------EASG 204
Query: 473 QYMFIHDALLEAVLCGNTEIPARSLHVHIQKLMSMEVGDTS-TGMELEFKKLSNIRAEP- 530
++++ A +I R L ++ ++ E DT+ G EF+ L +
Sbjct: 205 AFVYLRQPYY-ATRVNAADIENRVLELNKKQ----ESEDTAKAGFWEEFESLQKQEVKNL 259
Query: 531 SRFISASLPCNKHKNRLVHILPVESSRVCL----TPVRGDGFIDFIGQVHKTKEQFGQDG 586
+ + P NK KNR +ILP + SRV L + + G D+I + + G D
Sbjct: 260 HQRLEGQRPENKGKNRYKNILPFDHSRVILQGRDSNIPGS---DYINANYIKNQLLGPDE 316
Query: 587 PITVHCSRLAQHIENLKANDNLKFSQEYES---------IEPGQQFT---WDHSSMEMNK 634
+ + +Q ND + + + S +E G+ W M+
Sbjct: 317 NAKTYIA--SQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCVPYWPEVGMQRAY 374
Query: 635 AKNRYANVIAYDHSRVILSTVD------------------------GIPGR-DGFIDFIG 669
N +D + L T+ G+P G + F+
Sbjct: 375 GPYSVTNCGEHDTTEYKLRTLQVSPLDNGDLIREIWHYQYLSWPDHGVPSEPGGVLSFLD 434
Query: 670 QVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGV---IDLFQTVRILRTQ 726
Q+++ +E GPI VHCSAG+GRTG I + +++E + +G+ ID+ +T++++R Q
Sbjct: 435 QINQRQESLPHAGPIIVHCSAGIGRTGTIIVIDMLMENISTKGLDCDIDIQKTIQMVRAQ 494
Query: 727 RPAMVQTES 735
R MVQTE+
Sbjct: 495 RSGMVQTEA 503
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/26 (73%), Positives = 22/26 (84%), Gaps = 1/26 (3%)
Query: 1725 NLP-VGPLIVHCSAGVGRTGCFIVID 1749
+LP GP+IVHCSAG+GRTG IVID
Sbjct: 442 SLPHAGPIIVHCSAGIGRTGTIIVID 467
>pdb|4GS0|A Chain A, Crystal Structure Of Shp1 Catalytic Domain With Jak1
Activation Loop Peptide
pdb|4GS0|B Chain B, Crystal Structure Of Shp1 Catalytic Domain With Jak1
Activation Loop Peptide
Length = 308
Score = 196 bits (498), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 119/284 (41%), Positives = 161/284 (56%), Gaps = 27/284 (9%)
Query: 218 FSQEYESIEPGQQFTWDHSSME----MNKAKNRYANVIAYDHSRVILSTVD-GIPGSDYI 272
F +E+ES++ Q+ H +E NK KNRY N++ +DHSRVIL D IPGSDYI
Sbjct: 24 FWEEFESLQK-QEVKNLHQRLEGQRPENKGKNRYKNILPFDHSRVILQGRDSNIPGSDYI 82
Query: 273 NANYCDGY-----RKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCD 327
NANY Y+A+QG L+ T+ DFW+M W+ S IVM T+ E+ R KC
Sbjct: 83 NANYIKNQLLGPDENAKTYIASQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCV 142
Query: 328 QYWPSRGTE-TYGHITVTLQDVQELASYCIRTFMINKGADSER-REIKQLQFTAWPDHGV 385
YWP G + YG +VT + Y +RT ++ + + REI Q+ +WPDHGV
Sbjct: 143 PYWPEVGMQRAYGPYSVTNCGEHDTTEYKLRTLQVSPLDNGDLIREIWHYQYLSWPDHGV 202
Query: 386 PEHPAPFLLFLRRVRAMNPGTNSLESSGVNLP-VGPLIVHCSAGVGRTGCFIVIDAMIER 444
P P L FL ++ N + S LP GP+IVHCSAG+GRTG IVID ++E
Sbjct: 203 PSEPGGVLSFLDQI-------NQRQES---LPHAGPIIVHCSAGIGRTGTIIVIDMLMEN 252
Query: 445 IKH---DKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLEAV 485
I D +DI + +RAQR+ MVQTE QY FI+ A+ + +
Sbjct: 253 ISTKGLDCDIDIQKTIQMVRAQRSGMVQTEAQYKFIYVAIAQFI 296
Score = 193 bits (491), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 112/257 (43%), Positives = 148/257 (57%), Gaps = 22/257 (8%)
Query: 752 NKAKNRYANVIAYDHSRVILSTVD-GIPGSDYINANYCDGY-----RKHNAYVATQGPLQ 805
NK KNRY N++ +DHSRVIL D IPGSDYINANY Y+A+QG L+
Sbjct: 50 NKGKNRYKNILPFDHSRVILQGRDSNIPGSDYINANYIKNQLLGPDENAKTYIASQGCLE 109
Query: 806 ETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTE-TYGHITVTLQDVQELAS 864
T+ DFW+M W+ S IVM T+ E+ R KC YWP G + YG +VT +
Sbjct: 110 ATVNDFWQMAWQENSRVIVMTTREVEKGRNKCVPYWPEVGMQRAYGPYSVTNCGEHDTTE 169
Query: 865 YCIRTFMINKGADSER-REIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESS 923
Y +RT ++ + + REI Q+ +WPDHGVP P L FL ++ N + S
Sbjct: 170 YKLRTLQVSPLDNGDLIREIWHYQYLSWPDHGVPSEPGGVLSFLDQI-------NQRQES 222
Query: 924 GVNLP-VGPLIVHCSAGVGRTGCFIVIDAMIERIKH---DKTVDIYGHVTCLRAQRNYMV 979
LP GP+IVHCSAG+GRTG IVID ++E I D +DI + +RAQR+ MV
Sbjct: 223 ---LPHAGPIIVHCSAGIGRTGTIIVIDMLMENISTKGLDCDIDIQKTIQMVRAQRSGMV 279
Query: 980 QTEDQYMFIHDALLEAV 996
QTE QY FI+ A+ + +
Sbjct: 280 QTEAQYKFIYVAIAQFI 296
Score = 104 bits (260), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 90/193 (46%), Gaps = 40/193 (20%)
Query: 1313 ISASLPCNKHKNRLVHILPVESSRVCLTPV-RGIEGSDYINASFIDGYRL-----RSAYI 1366
+ P NK KNR +ILP + SRV L I GSDYINA++I L YI
Sbjct: 43 LEGQRPENKGKNRYKNILPFDHSRVILQGRDSNIPGSDYINANYIKNQLLGPDENAKTYI 102
Query: 1367 ATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------------------ 1402
A+QG L T DFW+M W+ NS ++VM T+ E GR
Sbjct: 103 ASQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCVPYWPEVGMQRAYGPYSVTNC 162
Query: 1403 -------YVLREFKVT--DARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKE 1453
Y LR +V+ D D R + +Q + WP+ GVP G + F+ Q+++ +E
Sbjct: 163 GEHDTTEYKLRTLQVSPLDNGDLI-REIWHYQYLSWPDHGVPSEPGGVLSFLDQINQRQE 221
Query: 1454 QFGQDGPITVHCS 1466
GPI VHCS
Sbjct: 222 SLPHAGPIIVHCS 234
Score = 100 bits (250), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 85/150 (56%), Gaps = 7/150 (4%)
Query: 1502 SQEKCHQYWPSERSIR-YEWFVVEPIAEYNMPQYVLREFKVT--DARDATSRTLRQFQLI 1558
+ KC YWP R Y + V E++ +Y LR +V+ D D R + +Q +
Sbjct: 137 GRNKCVPYWPEVGMQRAYGPYSVTNCGEHDTTEYKLRTLQVSPLDNGDLI-REIWHYQYL 195
Query: 1559 DWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQY 1618
WP+ GVP G + F+ Q+++ +E GPI VHCSAG+GRTG I + +++E +
Sbjct: 196 SWPDHGVPSEPGGVLSFLDQINQRQESLPHAGPIIVHCSAGIGRTGTIIVIDMLMENIST 255
Query: 1619 EGV---IDLFQTVRILRTQRPAMVQTEHLY 1645
+G+ ID+ +T++++R QR MVQTE Y
Sbjct: 256 KGLDCDIDIQKTIQMVRAQRSGMVQTEAQY 285
Score = 74.3 bits (181), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 105/246 (42%), Gaps = 49/246 (19%)
Query: 534 ISASLPCNKHKNRLVHILPVESSRVCL----TPVRGDGFIDFIGQVHKTKEQFGQDGPIT 589
+ P NK KNR +ILP + SRV L + + G D+I + + G D
Sbjct: 43 LEGQRPENKGKNRYKNILPFDHSRVILQGRDSNIPGS---DYINANYIKNQLLGPDENAK 99
Query: 590 VHCSRLAQHIENLKANDNLKFSQEYES---------IEPGQQFT---WDHSSMEMNKAKN 637
+ + +Q ND + + + S +E G+ W M+
Sbjct: 100 TYIA--SQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCVPYWPEVGMQRAYGPY 157
Query: 638 RYANVIAYDHSRVILSTVD------------------------GIPGR-DGFIDFIGQVH 672
N +D + L T+ G+P G + F+ Q++
Sbjct: 158 SVTNCGEHDTTEYKLRTLQVSPLDNGDLIREIWHYQYLSWPDHGVPSEPGGVLSFLDQIN 217
Query: 673 KTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGV---IDLFQTVRILRTQRPA 729
+ +E GPI VHCSAG+GRTG I + +++E + +G+ ID+ +T++++R QR
Sbjct: 218 QRQESLPHAGPIIVHCSAGIGRTGTIIVIDMLMENISTKGLDCDIDIQKTIQMVRAQRSG 277
Query: 730 MVQTES 735
MVQTE+
Sbjct: 278 MVQTEA 283
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 6/58 (10%)
Query: 610 FSQEYESIEPGQQFTWDHSSME----MNKAKNRYANVIAYDHSRVILSTVD-GIPGRD 662
F +E+ES++ Q+ H +E NK KNRY N++ +DHSRVIL D IPG D
Sbjct: 24 FWEEFESLQK-QEVKNLHQRLEGQRPENKGKNRYKNILPFDHSRVILQGRDSNIPGSD 80
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/22 (77%), Positives = 19/22 (86%)
Query: 1728 VGPLIVHCSAGVGRTGCFIVID 1749
GP+IVHCSAG+GRTG IVID
Sbjct: 226 AGPIIVHCSAGIGRTGTIIVID 247
>pdb|1GWZ|A Chain A, Crystal Structure Of The Catalytic Domain Of The Protein
Tyrosine Phosphatase Shp-1
Length = 299
Score = 196 bits (498), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 119/284 (41%), Positives = 161/284 (56%), Gaps = 27/284 (9%)
Query: 218 FSQEYESIEPGQQFTWDHSSME----MNKAKNRYANVIAYDHSRVILSTVD-GIPGSDYI 272
F +E+ES++ Q+ H +E NK KNRY N++ +DHSRVIL D IPGSDYI
Sbjct: 2 FWEEFESLQK-QEVKNLHQRLEGQRPENKGKNRYKNILPFDHSRVILQGRDSNIPGSDYI 60
Query: 273 NANYCDGY-----RKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCD 327
NANY Y+A+QG L+ T+ DFW+M W+ S IVM T+ E+ R KC
Sbjct: 61 NANYIKNQLLGPDENAKTYIASQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCV 120
Query: 328 QYWPSRGTE-TYGHITVTLQDVQELASYCIRTFMINKGADSER-REIKQLQFTAWPDHGV 385
YWP G + YG +VT + Y +RT ++ + + REI Q+ +WPDHGV
Sbjct: 121 PYWPEVGMQRAYGPYSVTNCGEHDTTEYKLRTLQVSPLDNGDLIREIWHYQYLSWPDHGV 180
Query: 386 PEHPAPFLLFLRRVRAMNPGTNSLESSGVNLP-VGPLIVHCSAGVGRTGCFIVIDAMIER 444
P P L FL ++ N + S LP GP+IVHCSAG+GRTG IVID ++E
Sbjct: 181 PSEPGGVLSFLDQI-------NQRQES---LPHAGPIIVHCSAGIGRTGTIIVIDMLMEN 230
Query: 445 IKH---DKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLEAV 485
I D +DI + +RAQR+ MVQTE QY FI+ A+ + +
Sbjct: 231 ISTKGLDCDIDIQKTIQMVRAQRSGMVQTEAQYKFIYVAIAQFI 274
Score = 193 bits (491), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 112/257 (43%), Positives = 148/257 (57%), Gaps = 22/257 (8%)
Query: 752 NKAKNRYANVIAYDHSRVILSTVD-GIPGSDYINANYCDGY-----RKHNAYVATQGPLQ 805
NK KNRY N++ +DHSRVIL D IPGSDYINANY Y+A+QG L+
Sbjct: 28 NKGKNRYKNILPFDHSRVILQGRDSNIPGSDYINANYIKNQLLGPDENAKTYIASQGCLE 87
Query: 806 ETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTE-TYGHITVTLQDVQELAS 864
T+ DFW+M W+ S IVM T+ E+ R KC YWP G + YG +VT +
Sbjct: 88 ATVNDFWQMAWQENSRVIVMTTREVEKGRNKCVPYWPEVGMQRAYGPYSVTNCGEHDTTE 147
Query: 865 YCIRTFMINKGADSER-REIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESS 923
Y +RT ++ + + REI Q+ +WPDHGVP P L FL ++ N + S
Sbjct: 148 YKLRTLQVSPLDNGDLIREIWHYQYLSWPDHGVPSEPGGVLSFLDQI-------NQRQES 200
Query: 924 GVNLP-VGPLIVHCSAGVGRTGCFIVIDAMIERIKH---DKTVDIYGHVTCLRAQRNYMV 979
LP GP+IVHCSAG+GRTG IVID ++E I D +DI + +RAQR+ MV
Sbjct: 201 ---LPHAGPIIVHCSAGIGRTGTIIVIDMLMENISTKGLDCDIDIQKTIQMVRAQRSGMV 257
Query: 980 QTEDQYMFIHDALLEAV 996
QTE QY FI+ A+ + +
Sbjct: 258 QTEAQYKFIYVAIAQFI 274
Score = 104 bits (260), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 90/193 (46%), Gaps = 40/193 (20%)
Query: 1313 ISASLPCNKHKNRLVHILPVESSRVCLTPV-RGIEGSDYINASFIDGYRL-----RSAYI 1366
+ P NK KNR +ILP + SRV L I GSDYINA++I L YI
Sbjct: 21 LEGQRPENKGKNRYKNILPFDHSRVILQGRDSNIPGSDYINANYIKNQLLGPDENAKTYI 80
Query: 1367 ATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------------------ 1402
A+QG L T DFW+M W+ NS ++VM T+ E GR
Sbjct: 81 ASQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCVPYWPEVGMQRAYGPYSVTNC 140
Query: 1403 -------YVLREFKVT--DARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKE 1453
Y LR +V+ D D R + +Q + WP+ GVP G + F+ Q+++ +E
Sbjct: 141 GEHDTTEYKLRTLQVSPLDNGDLI-REIWHYQYLSWPDHGVPSEPGGVLSFLDQINQRQE 199
Query: 1454 QFGQDGPITVHCS 1466
GPI VHCS
Sbjct: 200 SLPHAGPIIVHCS 212
Score = 100 bits (250), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 88/159 (55%), Gaps = 7/159 (4%)
Query: 1493 VLIAYLVLFSQEKCHQYWPSERSIR-YEWFVVEPIAEYNMPQYVLREFKVT--DARDATS 1549
V+ V + KC YWP R Y + V E++ +Y LR +V+ D D
Sbjct: 106 VMTTREVEKGRNKCVPYWPEVGMQRAYGPYSVTNCGEHDTTEYKLRTLQVSPLDNGDLI- 164
Query: 1550 RTLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITL 1609
R + +Q + WP+ GVP G + F+ Q+++ +E GPI VHCSAG+GRTG I +
Sbjct: 165 REIWHYQYLSWPDHGVPSEPGGVLSFLDQINQRQESLPHAGPIIVHCSAGIGRTGTIIVI 224
Query: 1610 SIVLERMQYEGV---IDLFQTVRILRTQRPAMVQTEHLY 1645
+++E + +G+ ID+ +T++++R QR MVQTE Y
Sbjct: 225 DMLMENISTKGLDCDIDIQKTIQMVRAQRSGMVQTEAQY 263
Score = 73.9 bits (180), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 105/246 (42%), Gaps = 49/246 (19%)
Query: 534 ISASLPCNKHKNRLVHILPVESSRVCL----TPVRGDGFIDFIGQVHKTKEQFGQDGPIT 589
+ P NK KNR +ILP + SRV L + + G D+I + + G D
Sbjct: 21 LEGQRPENKGKNRYKNILPFDHSRVILQGRDSNIPGS---DYINANYIKNQLLGPDENAK 77
Query: 590 VHCSRLAQHIENLKANDNLKFSQEYES---------IEPGQQFT---WDHSSMEMNKAKN 637
+ + +Q ND + + + S +E G+ W M+
Sbjct: 78 TYIA--SQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCVPYWPEVGMQRAYGPY 135
Query: 638 RYANVIAYDHSRVILSTVD------------------------GIPGR-DGFIDFIGQVH 672
N +D + L T+ G+P G + F+ Q++
Sbjct: 136 SVTNCGEHDTTEYKLRTLQVSPLDNGDLIREIWHYQYLSWPDHGVPSEPGGVLSFLDQIN 195
Query: 673 KTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGV---IDLFQTVRILRTQRPA 729
+ +E GPI VHCSAG+GRTG I + +++E + +G+ ID+ +T++++R QR
Sbjct: 196 QRQESLPHAGPIIVHCSAGIGRTGTIIVIDMLMENISTKGLDCDIDIQKTIQMVRAQRSG 255
Query: 730 MVQTES 735
MVQTE+
Sbjct: 256 MVQTEA 261
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 6/58 (10%)
Query: 610 FSQEYESIEPGQQFTWDHSSME----MNKAKNRYANVIAYDHSRVILSTVD-GIPGRD 662
F +E+ES++ Q+ H +E NK KNRY N++ +DHSRVIL D IPG D
Sbjct: 2 FWEEFESLQK-QEVKNLHQRLEGQRPENKGKNRYKNILPFDHSRVILQGRDSNIPGSD 58
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/22 (77%), Positives = 19/22 (86%)
Query: 1728 VGPLIVHCSAGVGRTGCFIVID 1749
GP+IVHCSAG+GRTG IVID
Sbjct: 204 AGPIIVHCSAGIGRTGTIIVID 225
>pdb|4GRY|A Chain A, Crystal Structure Of Shp1 Catalytic Domain With Jak1
Activation Loop Peptide
pdb|4GRZ|A Chain A, Crystal Structure Of Shp1 Catalytic Domain With Po4
Length = 288
Score = 192 bits (489), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 118/284 (41%), Positives = 160/284 (56%), Gaps = 27/284 (9%)
Query: 218 FSQEYESIEPGQQFTWDHSSME----MNKAKNRYANVIAYDHSRVILSTVD-GIPGSDYI 272
F +E+ES++ Q+ H +E NK KNRY N++ +DHSRVIL D IPGSDYI
Sbjct: 4 FWEEFESLQK-QEVKNLHQRLEGQRPENKGKNRYKNILPFDHSRVILQGRDSNIPGSDYI 62
Query: 273 NANYCDGY-----RKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCD 327
NANY Y+A+QG L+ T+ DFW+M W+ S IVM T+ E+ R KC
Sbjct: 63 NANYIKNQLLGPDENAKTYIASQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCV 122
Query: 328 QYWPSRGTE-TYGHITVTLQDVQELASYCIRTFMINKGADSER-REIKQLQFTAWPDHGV 385
YWP G + YG +VT + Y +RT ++ + + REI Q+ +WPDHGV
Sbjct: 123 PYWPEVGMQRAYGPYSVTNCGEHDTTEYKLRTLQVSPLDNGDLIREIWHYQYLSWPDHGV 182
Query: 386 PEHPAPFLLFLRRVRAMNPGTNSLESSGVNLP-VGPLIVHCSAGVGRTGCFIVIDAMIER 444
P P L FL ++ N + S LP GP+IVH SAG+GRTG IVID ++E
Sbjct: 183 PSEPGGVLSFLDQI-------NQRQES---LPHAGPIIVHSSAGIGRTGTIIVIDMLMEN 232
Query: 445 IKH---DKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLEAV 485
I D +DI + +RAQR+ MVQTE QY FI+ A+ + +
Sbjct: 233 ISTKGLDCDIDIQKTIQMVRAQRSGMVQTEAQYKFIYVAIAQFI 276
Score = 190 bits (482), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 111/257 (43%), Positives = 147/257 (57%), Gaps = 22/257 (8%)
Query: 752 NKAKNRYANVIAYDHSRVILSTVD-GIPGSDYINANYCDGY-----RKHNAYVATQGPLQ 805
NK KNRY N++ +DHSRVIL D IPGSDYINANY Y+A+QG L+
Sbjct: 30 NKGKNRYKNILPFDHSRVILQGRDSNIPGSDYINANYIKNQLLGPDENAKTYIASQGCLE 89
Query: 806 ETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTE-TYGHITVTLQDVQELAS 864
T+ DFW+M W+ S IVM T+ E+ R KC YWP G + YG +VT +
Sbjct: 90 ATVNDFWQMAWQENSRVIVMTTREVEKGRNKCVPYWPEVGMQRAYGPYSVTNCGEHDTTE 149
Query: 865 YCIRTFMINKGADSER-REIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESS 923
Y +RT ++ + + REI Q+ +WPDHGVP P L FL ++ N + S
Sbjct: 150 YKLRTLQVSPLDNGDLIREIWHYQYLSWPDHGVPSEPGGVLSFLDQI-------NQRQES 202
Query: 924 GVNLP-VGPLIVHCSAGVGRTGCFIVIDAMIERIKH---DKTVDIYGHVTCLRAQRNYMV 979
LP GP+IVH SAG+GRTG IVID ++E I D +DI + +RAQR+ MV
Sbjct: 203 ---LPHAGPIIVHSSAGIGRTGTIIVIDMLMENISTKGLDCDIDIQKTIQMVRAQRSGMV 259
Query: 980 QTEDQYMFIHDALLEAV 996
QTE QY FI+ A+ + +
Sbjct: 260 QTEAQYKFIYVAIAQFI 276
Score = 100 bits (250), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 89/193 (46%), Gaps = 40/193 (20%)
Query: 1313 ISASLPCNKHKNRLVHILPVESSRVCLTPV-RGIEGSDYINASFIDGYRL-----RSAYI 1366
+ P NK KNR +ILP + SRV L I GSDYINA++I L YI
Sbjct: 23 LEGQRPENKGKNRYKNILPFDHSRVILQGRDSNIPGSDYINANYIKNQLLGPDENAKTYI 82
Query: 1367 ATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------------------ 1402
A+QG L T DFW+M W+ NS ++VM T+ E GR
Sbjct: 83 ASQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCVPYWPEVGMQRAYGPYSVTNC 142
Query: 1403 -------YVLREFKVT--DARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKE 1453
Y LR +V+ D D R + +Q + WP+ GVP G + F+ Q+++ +E
Sbjct: 143 GEHDTTEYKLRTLQVSPLDNGDLI-REIWHYQYLSWPDHGVPSEPGGVLSFLDQINQRQE 201
Query: 1454 QFGQDGPITVHCS 1466
GPI VH S
Sbjct: 202 SLPHAGPIIVHSS 214
Score = 97.1 bits (240), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 87/159 (54%), Gaps = 7/159 (4%)
Query: 1493 VLIAYLVLFSQEKCHQYWPSERSIR-YEWFVVEPIAEYNMPQYVLREFKVT--DARDATS 1549
V+ V + KC YWP R Y + V E++ +Y LR +V+ D D
Sbjct: 108 VMTTREVEKGRNKCVPYWPEVGMQRAYGPYSVTNCGEHDTTEYKLRTLQVSPLDNGDLI- 166
Query: 1550 RTLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITL 1609
R + +Q + WP+ GVP G + F+ Q+++ +E GPI VH SAG+GRTG I +
Sbjct: 167 REIWHYQYLSWPDHGVPSEPGGVLSFLDQINQRQESLPHAGPIIVHSSAGIGRTGTIIVI 226
Query: 1610 SIVLERMQYEGV---IDLFQTVRILRTQRPAMVQTEHLY 1645
+++E + +G+ ID+ +T++++R QR MVQTE Y
Sbjct: 227 DMLMENISTKGLDCDIDIQKTIQMVRAQRSGMVQTEAQY 265
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 104/246 (42%), Gaps = 49/246 (19%)
Query: 534 ISASLPCNKHKNRLVHILPVESSRVCL----TPVRGDGFIDFIGQVHKTKEQFGQDGPIT 589
+ P NK KNR +ILP + SRV L + + G D+I + + G D
Sbjct: 23 LEGQRPENKGKNRYKNILPFDHSRVILQGRDSNIPGS---DYINANYIKNQLLGPDENAK 79
Query: 590 VHCSRLAQHIENLKANDNLKFSQEYES---------IEPGQQFT---WDHSSMEMNKAKN 637
+ + +Q ND + + + S +E G+ W M+
Sbjct: 80 TYIA--SQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCVPYWPEVGMQRAYGPY 137
Query: 638 RYANVIAYDHSRVILSTVD------------------------GIPGR-DGFIDFIGQVH 672
N +D + L T+ G+P G + F+ Q++
Sbjct: 138 SVTNCGEHDTTEYKLRTLQVSPLDNGDLIREIWHYQYLSWPDHGVPSEPGGVLSFLDQIN 197
Query: 673 KTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGV---IDLFQTVRILRTQRPA 729
+ +E GPI VH SAG+GRTG I + +++E + +G+ ID+ +T++++R QR
Sbjct: 198 QRQESLPHAGPIIVHSSAGIGRTGTIIVIDMLMENISTKGLDCDIDIQKTIQMVRAQRSG 257
Query: 730 MVQTES 735
MVQTE+
Sbjct: 258 MVQTEA 263
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 6/58 (10%)
Query: 610 FSQEYESIEPGQQFTWDHSSME----MNKAKNRYANVIAYDHSRVILSTVD-GIPGRD 662
F +E+ES++ Q+ H +E NK KNRY N++ +DHSRVIL D IPG D
Sbjct: 4 FWEEFESLQK-QEVKNLHQRLEGQRPENKGKNRYKNILPFDHSRVILQGRDSNIPGSD 60
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 16/22 (72%), Positives = 18/22 (81%)
Query: 1728 VGPLIVHCSAGVGRTGCFIVID 1749
GP+IVH SAG+GRTG IVID
Sbjct: 206 AGPIIVHSSAGIGRTGTIIVID 227
>pdb|1FPR|A Chain A, Crystal Structure Of The Complex Formed Between The
Catalytic Domain Of Shp-1 And An In Vitro Peptide
Substrate Py469 Derived From Shps-1
Length = 284
Score = 192 bits (489), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 118/284 (41%), Positives = 160/284 (56%), Gaps = 27/284 (9%)
Query: 218 FSQEYESIEPGQQFTWDHSSME----MNKAKNRYANVIAYDHSRVILSTVD-GIPGSDYI 272
F +E+ES++ Q+ H +E NK KNRY N++ +DHSRVIL D IPGSDYI
Sbjct: 2 FWEEFESLQK-QEVKNLHQRLEGQRPENKGKNRYKNILPFDHSRVILQGRDSNIPGSDYI 60
Query: 273 NANYCDGY-----RKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCD 327
NANY Y+A+QG L+ T+ DFW+M W+ S IVM T+ E+ R KC
Sbjct: 61 NANYIKNQLLGPDENAKTYIASQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCV 120
Query: 328 QYWPSRGTE-TYGHITVTLQDVQELASYCIRTFMINKGADSER-REIKQLQFTAWPDHGV 385
YWP G + YG +VT + Y +RT ++ + + REI Q+ +WPDHGV
Sbjct: 121 PYWPEVGMQRAYGPYSVTNCGEHDTTEYKLRTLQVSPLDNGDLIREIWHYQYLSWPDHGV 180
Query: 386 PEHPAPFLLFLRRVRAMNPGTNSLESSGVNLP-VGPLIVHCSAGVGRTGCFIVIDAMIER 444
P P L FL ++ N + S LP GP+IVH SAG+GRTG IVID ++E
Sbjct: 181 PSEPGGVLSFLDQI-------NQRQES---LPHAGPIIVHSSAGIGRTGTIIVIDMLMEN 230
Query: 445 IKH---DKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLEAV 485
I D +DI + +RAQR+ MVQTE QY FI+ A+ + +
Sbjct: 231 ISTKGLDCDIDIQKTIQMVRAQRSGMVQTEAQYKFIYVAIAQFI 274
Score = 189 bits (481), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 111/257 (43%), Positives = 147/257 (57%), Gaps = 22/257 (8%)
Query: 752 NKAKNRYANVIAYDHSRVILSTVD-GIPGSDYINANYCDGY-----RKHNAYVATQGPLQ 805
NK KNRY N++ +DHSRVIL D IPGSDYINANY Y+A+QG L+
Sbjct: 28 NKGKNRYKNILPFDHSRVILQGRDSNIPGSDYINANYIKNQLLGPDENAKTYIASQGCLE 87
Query: 806 ETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTE-TYGHITVTLQDVQELAS 864
T+ DFW+M W+ S IVM T+ E+ R KC YWP G + YG +VT +
Sbjct: 88 ATVNDFWQMAWQENSRVIVMTTREVEKGRNKCVPYWPEVGMQRAYGPYSVTNCGEHDTTE 147
Query: 865 YCIRTFMINKGADSER-REIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESS 923
Y +RT ++ + + REI Q+ +WPDHGVP P L FL ++ N + S
Sbjct: 148 YKLRTLQVSPLDNGDLIREIWHYQYLSWPDHGVPSEPGGVLSFLDQI-------NQRQES 200
Query: 924 GVNLP-VGPLIVHCSAGVGRTGCFIVIDAMIERIKH---DKTVDIYGHVTCLRAQRNYMV 979
LP GP+IVH SAG+GRTG IVID ++E I D +DI + +RAQR+ MV
Sbjct: 201 ---LPHAGPIIVHSSAGIGRTGTIIVIDMLMENISTKGLDCDIDIQKTIQMVRAQRSGMV 257
Query: 980 QTEDQYMFIHDALLEAV 996
QTE QY FI+ A+ + +
Sbjct: 258 QTEAQYKFIYVAIAQFI 274
Score = 100 bits (250), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 89/193 (46%), Gaps = 40/193 (20%)
Query: 1313 ISASLPCNKHKNRLVHILPVESSRVCLTPV-RGIEGSDYINASFIDGYRL-----RSAYI 1366
+ P NK KNR +ILP + SRV L I GSDYINA++I L YI
Sbjct: 21 LEGQRPENKGKNRYKNILPFDHSRVILQGRDSNIPGSDYINANYIKNQLLGPDENAKTYI 80
Query: 1367 ATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------------------ 1402
A+QG L T DFW+M W+ NS ++VM T+ E GR
Sbjct: 81 ASQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCVPYWPEVGMQRAYGPYSVTNC 140
Query: 1403 -------YVLREFKVT--DARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKE 1453
Y LR +V+ D D R + +Q + WP+ GVP G + F+ Q+++ +E
Sbjct: 141 GEHDTTEYKLRTLQVSPLDNGDLI-REIWHYQYLSWPDHGVPSEPGGVLSFLDQINQRQE 199
Query: 1454 QFGQDGPITVHCS 1466
GPI VH S
Sbjct: 200 SLPHAGPIIVHSS 212
Score = 97.1 bits (240), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 84/150 (56%), Gaps = 7/150 (4%)
Query: 1502 SQEKCHQYWPSERSIR-YEWFVVEPIAEYNMPQYVLREFKVT--DARDATSRTLRQFQLI 1558
+ KC YWP R Y + V E++ +Y LR +V+ D D R + +Q +
Sbjct: 115 GRNKCVPYWPEVGMQRAYGPYSVTNCGEHDTTEYKLRTLQVSPLDNGDLI-REIWHYQYL 173
Query: 1559 DWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQY 1618
WP+ GVP G + F+ Q+++ +E GPI VH SAG+GRTG I + +++E +
Sbjct: 174 SWPDHGVPSEPGGVLSFLDQINQRQESLPHAGPIIVHSSAGIGRTGTIIVIDMLMENIST 233
Query: 1619 EGV---IDLFQTVRILRTQRPAMVQTEHLY 1645
+G+ ID+ +T++++R QR MVQTE Y
Sbjct: 234 KGLDCDIDIQKTIQMVRAQRSGMVQTEAQY 263
Score = 70.5 bits (171), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 104/246 (42%), Gaps = 49/246 (19%)
Query: 534 ISASLPCNKHKNRLVHILPVESSRVCL----TPVRGDGFIDFIGQVHKTKEQFGQDGPIT 589
+ P NK KNR +ILP + SRV L + + G D+I + + G D
Sbjct: 21 LEGQRPENKGKNRYKNILPFDHSRVILQGRDSNIPGS---DYINANYIKNQLLGPDENAK 77
Query: 590 VHCSRLAQHIENLKANDNLKFSQEYES---------IEPGQQFT---WDHSSMEMNKAKN 637
+ + +Q ND + + + S +E G+ W M+
Sbjct: 78 TYIA--SQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCVPYWPEVGMQRAYGPY 135
Query: 638 RYANVIAYDHSRVILSTVD------------------------GIPGR-DGFIDFIGQVH 672
N +D + L T+ G+P G + F+ Q++
Sbjct: 136 SVTNCGEHDTTEYKLRTLQVSPLDNGDLIREIWHYQYLSWPDHGVPSEPGGVLSFLDQIN 195
Query: 673 KTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGV---IDLFQTVRILRTQRPA 729
+ +E GPI VH SAG+GRTG I + +++E + +G+ ID+ +T++++R QR
Sbjct: 196 QRQESLPHAGPIIVHSSAGIGRTGTIIVIDMLMENISTKGLDCDIDIQKTIQMVRAQRSG 255
Query: 730 MVQTES 735
MVQTE+
Sbjct: 256 MVQTEA 261
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 6/58 (10%)
Query: 610 FSQEYESIEPGQQFTWDHSSME----MNKAKNRYANVIAYDHSRVILSTVD-GIPGRD 662
F +E+ES++ Q+ H +E NK KNRY N++ +DHSRVIL D IPG D
Sbjct: 2 FWEEFESLQK-QEVKNLHQRLEGQRPENKGKNRYKNILPFDHSRVILQGRDSNIPGSD 58
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 16/22 (72%), Positives = 18/22 (81%)
Query: 1728 VGPLIVHCSAGVGRTGCFIVID 1749
GP+IVH SAG+GRTG IVID
Sbjct: 204 AGPIIVHSSAGIGRTGTIIVID 225
>pdb|2GP0|A Chain A, Heptp Catalytic Domain (Residues 44-339), S225d Mutant
Length = 309
Score = 189 bits (480), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 100/242 (41%), Positives = 132/242 (54%), Gaps = 14/242 (5%)
Query: 241 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYR-KHNAYVATQGPLQETLGD 299
+ +K+RY ++ SRV L DYINANY GY K Y+ATQGP+ T+ D
Sbjct: 68 HASKDRYKTILPNPQSRVCLGRAQSQEDGDYINANYIRGYDGKEKVYIATQGPMPNTVSD 127
Query: 300 FWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYCIRTF 359
FW MVW+ IVM+T+L E + KC YWP+ ETYG + +QD++E Y +R
Sbjct: 128 FWEMVWQEEVSLIVMLTQLRE-GKEKCVHYWPTE-EETYGPFQIRIQDMKECPEYTVRQL 185
Query: 360 MINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVG 419
I ERR++K + F+AWPDH PE P L + V ES G
Sbjct: 186 TIQ--YQEERRDVKHILFSAWPDHQTPESAGPLLRLVAEVE---------ESPETAAHPG 234
Query: 420 PLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHD 479
P++VHCSAG+GRTGCFI +++K VDI G V LR R M+QT +QY F+H
Sbjct: 235 PIVVHCSAGIGRTGCFIATRIGCQQLKARGEVDILGIVCQLRLDRGGMIQTAEQYQFLHH 294
Query: 480 AL 481
L
Sbjct: 295 TL 296
Score = 189 bits (480), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 100/242 (41%), Positives = 132/242 (54%), Gaps = 14/242 (5%)
Query: 752 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYR-KHNAYVATQGPLQETLGD 810
+ +K+RY ++ SRV L DYINANY GY K Y+ATQGP+ T+ D
Sbjct: 68 HASKDRYKTILPNPQSRVCLGRAQSQEDGDYINANYIRGYDGKEKVYIATQGPMPNTVSD 127
Query: 811 FWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYCIRTF 870
FW MVW+ IVM+T+L E + KC YWP+ ETYG + +QD++E Y +R
Sbjct: 128 FWEMVWQEEVSLIVMLTQLRE-GKEKCVHYWPTE-EETYGPFQIRIQDMKECPEYTVRQL 185
Query: 871 MINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVG 930
I ERR++K + F+AWPDH PE P L + V ES G
Sbjct: 186 TIQ--YQEERRDVKHILFSAWPDHQTPESAGPLLRLVAEVE---------ESPETAAHPG 234
Query: 931 PLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHD 990
P++VHCSAG+GRTGCFI +++K VDI G V LR R M+QT +QY F+H
Sbjct: 235 PIVVHCSAGIGRTGCFIATRIGCQQLKARGEVDILGIVCQLRLDRGGMIQTAEQYQFLHH 294
Query: 991 AL 992
L
Sbjct: 295 TL 296
Score = 108 bits (270), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 100/206 (48%), Gaps = 36/206 (17%)
Query: 1291 TPVRGKTEFKKLSNIRAEPSRFISAS---LPCNKHKNRLVHILPVESSRVCLTPVRGIEG 1347
+P + + EF K+ PS F+S +P + K+R ILP SRVCL + E
Sbjct: 42 SPKQLEEEFLKI------PSNFVSPEDLDIPGHASKDRYKTILPNPQSRVCLGRAQSQED 95
Query: 1348 SDYINASFIDGYRLRS-AYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGRYVLR 1406
DYINA++I GY + YIATQGP+ +T DFW M+W+ +++VMLT+L+E +
Sbjct: 96 GDYINANYIRGYDGKEKVYIATQGPMPNTVSDFWEMVWQEEVSLIVMLTQLREGKEKCVH 155
Query: 1407 ------------EFKVTDARDATSRTLRQFQL--------------IDWPEQGVPKSGDG 1440
+ ++ D ++ T+RQ + WP+ P+S
Sbjct: 156 YWPTEEETYGPFQIRIQDMKECPEYTVRQLTIQYQEERRDVKHILFSAWPDHQTPESAGP 215
Query: 1441 FIDFIGQVHKTKEQFGQDGPITVHCS 1466
+ + +V ++ E GPI VHCS
Sbjct: 216 LLRLVAEVEESPETAAHPGPIVVHCS 241
Score = 87.8 bits (216), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 83/176 (47%), Gaps = 10/176 (5%)
Query: 1495 IAYLVLFSQ-----EKCHQYWPSERSIRYEWFVVEPIAEYNMPQYVLREFKVTDARDATS 1549
++ +V+ +Q EKC YWP+E Y F + P+Y +R+ + +
Sbjct: 137 VSLIVMLTQLREGKEKCVHYWPTEEET-YGPFQIRIQDMKECPEYTVRQLTIQYQEE--R 193
Query: 1550 RTLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITL 1609
R ++ WP+ P+S + + +V ++ E GPI VHCSAG+GRTG FI
Sbjct: 194 RDVKHILFSAWPDHQTPESAGPLLRLVAEVEESPETAAHPGPIVVHCSAGIGRTGCFIAT 253
Query: 1610 SIVLERMQYEGVIDLFQTVRILRTQRPAMVQTEHLYTSSPFSEQLALDMREVPPGP 1665
I ++++ G +D+ V LR R M+QT Y LAL ++P P
Sbjct: 254 RIGCQQLKARGEVDILGIVCQLRLDRGGMIQTAEQYQF--LHHTLALYAGQLPEEP 307
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 109/264 (41%), Gaps = 39/264 (14%)
Query: 516 MELEFKKLSNIRAEPSRFISAS---LPCNKHKNRLVHILPVESSRVCLTPVRGDGFIDFI 572
+E EF K+ PS F+S +P + K+R ILP SRVCL + D+I
Sbjct: 46 LEEEFLKI------PSNFVSPEDLDIPGHASKDRYKTILPNPQSRVCLGRAQSQEDGDYI 99
Query: 573 ------GQVHKTKEQFGQDGPITVHCSRLAQHIENLKANDNLKFSQEYESIE------PG 620
G K K GP+ S + + + + + +Q E E P
Sbjct: 100 NANYIRGYDGKEKVYIATQGPMPNTVSDFWEMVWQEEVSLIVMLTQLREGKEKCVHYWPT 159
Query: 621 QQFTWDHSSMEMNKAKN--RYAN---VIAYDHSRVILSTV-------DGIPGRDG-FIDF 667
++ T+ + + K Y I Y R + + P G +
Sbjct: 160 EEETYGPFQIRIQDMKECPEYTVRQLTIQYQEERRDVKHILFSAWPDHQTPESAGPLLRL 219
Query: 668 IGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVIDLFQTVRILRTQR 727
+ +V ++ E GPI VHCSAG+GRTG FI I ++++ G +D+ V LR R
Sbjct: 220 VAEVEESPETAAHPGPIVVHCSAGIGRTGCFIATRIGCQQLKARGEVDILGIVCQLRLDR 279
Query: 728 PAMVQTESIEPGQQFTWDHSSMEM 751
M+QT +Q+ + H ++ +
Sbjct: 280 GGMIQT-----AEQYQFLHHTLAL 298
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 35/88 (39%), Gaps = 30/88 (34%)
Query: 1711 LLFILKSSLESSGVNLPVGPLIVHCSAGVGRTGCFI------------------------ 1746
LL ++ ES GP++VHCSAG+GRTGCFI
Sbjct: 216 LLRLVAEVEESPETAAHPGPIVVHCSAGIGRTGCFIATRIGCQQLKARGEVDILGIVCQL 275
Query: 1747 ------VIDAKEQYQFCYHAALEYLGSF 1768
+I EQYQF +H Y G
Sbjct: 276 RLDRGGMIQTAEQYQFLHHTLALYAGQL 303
>pdb|1ZC0|A Chain A, Crystal Structure Of Human Hematopoietic Tyrosine
Phosphatase (heptp) Catalytic Domain
Length = 309
Score = 189 bits (479), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 100/242 (41%), Positives = 131/242 (54%), Gaps = 14/242 (5%)
Query: 241 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYR-KHNAYVATQGPLQETLGD 299
+ +K+RY ++ SRV L DYINANY GY K Y+ATQGP+ T+ D
Sbjct: 68 HASKDRYKTILPNPQSRVCLGRAQSQEDGDYINANYIRGYDGKEKVYIATQGPMPNTVSD 127
Query: 300 FWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYCIRTF 359
FW MVW+ IVM+T+L E + KC YWP+ ETYG + +QD++E Y +R
Sbjct: 128 FWEMVWQEEVSLIVMLTQLRE-GKEKCVHYWPTE-EETYGPFQIRIQDMKECPEYTVRQL 185
Query: 360 MINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVG 419
I ERR +K + F+AWPDH PE P L + V ES G
Sbjct: 186 TIQ--YQEERRSVKHILFSAWPDHQTPESAGPLLRLVAEVE---------ESPETAAHPG 234
Query: 420 PLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHD 479
P++VHCSAG+GRTGCFI +++K VDI G V LR R M+QT +QY F+H
Sbjct: 235 PIVVHCSAGIGRTGCFIATRIGCQQLKARGEVDILGIVCQLRLDRGGMIQTAEQYQFLHH 294
Query: 480 AL 481
L
Sbjct: 295 TL 296
Score = 189 bits (479), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 100/242 (41%), Positives = 131/242 (54%), Gaps = 14/242 (5%)
Query: 752 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYR-KHNAYVATQGPLQETLGD 810
+ +K+RY ++ SRV L DYINANY GY K Y+ATQGP+ T+ D
Sbjct: 68 HASKDRYKTILPNPQSRVCLGRAQSQEDGDYINANYIRGYDGKEKVYIATQGPMPNTVSD 127
Query: 811 FWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYCIRTF 870
FW MVW+ IVM+T+L E + KC YWP+ ETYG + +QD++E Y +R
Sbjct: 128 FWEMVWQEEVSLIVMLTQLRE-GKEKCVHYWPTE-EETYGPFQIRIQDMKECPEYTVRQL 185
Query: 871 MINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVG 930
I ERR +K + F+AWPDH PE P L + V ES G
Sbjct: 186 TIQ--YQEERRSVKHILFSAWPDHQTPESAGPLLRLVAEVE---------ESPETAAHPG 234
Query: 931 PLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHD 990
P++VHCSAG+GRTGCFI +++K VDI G V LR R M+QT +QY F+H
Sbjct: 235 PIVVHCSAGIGRTGCFIATRIGCQQLKARGEVDILGIVCQLRLDRGGMIQTAEQYQFLHH 294
Query: 991 AL 992
L
Sbjct: 295 TL 296
Score = 108 bits (270), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 100/206 (48%), Gaps = 36/206 (17%)
Query: 1291 TPVRGKTEFKKLSNIRAEPSRFISAS---LPCNKHKNRLVHILPVESSRVCLTPVRGIEG 1347
+P + + EF K+ PS F+S +P + K+R ILP SRVCL + E
Sbjct: 42 SPKQLEEEFLKI------PSNFVSPEDLDIPGHASKDRYKTILPNPQSRVCLGRAQSQED 95
Query: 1348 SDYINASFIDGYRLRS-AYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGRYVLR 1406
DYINA++I GY + YIATQGP+ +T DFW M+W+ +++VMLT+L+E +
Sbjct: 96 GDYINANYIRGYDGKEKVYIATQGPMPNTVSDFWEMVWQEEVSLIVMLTQLREGKEKCVH 155
Query: 1407 ------------EFKVTDARDATSRTLRQFQL--------------IDWPEQGVPKSGDG 1440
+ ++ D ++ T+RQ + WP+ P+S
Sbjct: 156 YWPTEEETYGPFQIRIQDMKECPEYTVRQLTIQYQEERRSVKHILFSAWPDHQTPESAGP 215
Query: 1441 FIDFIGQVHKTKEQFGQDGPITVHCS 1466
+ + +V ++ E GPI VHCS
Sbjct: 216 LLRLVAEVEESPETAAHPGPIVVHCS 241
Score = 89.0 bits (219), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 84/176 (47%), Gaps = 10/176 (5%)
Query: 1495 IAYLVLFSQ-----EKCHQYWPSERSIRYEWFVVEPIAEYNMPQYVLREFKVTDARDATS 1549
++ +V+ +Q EKC YWP+E Y F + P+Y +R+ + +
Sbjct: 137 VSLIVMLTQLREGKEKCVHYWPTEEET-YGPFQIRIQDMKECPEYTVRQLTIQYQEE--R 193
Query: 1550 RTLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITL 1609
R+++ WP+ P+S + + +V ++ E GPI VHCSAG+GRTG FI
Sbjct: 194 RSVKHILFSAWPDHQTPESAGPLLRLVAEVEESPETAAHPGPIVVHCSAGIGRTGCFIAT 253
Query: 1610 SIVLERMQYEGVIDLFQTVRILRTQRPAMVQTEHLYTSSPFSEQLALDMREVPPGP 1665
I ++++ G +D+ V LR R M+QT Y LAL ++P P
Sbjct: 254 RIGCQQLKARGEVDILGIVCQLRLDRGGMIQTAEQYQF--LHHTLALYAGQLPEEP 307
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 109/264 (41%), Gaps = 39/264 (14%)
Query: 516 MELEFKKLSNIRAEPSRFISAS---LPCNKHKNRLVHILPVESSRVCLTPVRGDGFIDFI 572
+E EF K+ PS F+S +P + K+R ILP SRVCL + D+I
Sbjct: 46 LEEEFLKI------PSNFVSPEDLDIPGHASKDRYKTILPNPQSRVCLGRAQSQEDGDYI 99
Query: 573 ------GQVHKTKEQFGQDGPITVHCSRLAQHIENLKANDNLKFSQEYESIE------PG 620
G K K GP+ S + + + + + +Q E E P
Sbjct: 100 NANYIRGYDGKEKVYIATQGPMPNTVSDFWEMVWQEEVSLIVMLTQLREGKEKCVHYWPT 159
Query: 621 QQFTWDHSSMEMNKAKN--RYAN---VIAYDHSRVILSTV-------DGIPGRDG-FIDF 667
++ T+ + + K Y I Y R + + P G +
Sbjct: 160 EEETYGPFQIRIQDMKECPEYTVRQLTIQYQEERRSVKHILFSAWPDHQTPESAGPLLRL 219
Query: 668 IGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVIDLFQTVRILRTQR 727
+ +V ++ E GPI VHCSAG+GRTG FI I ++++ G +D+ V LR R
Sbjct: 220 VAEVEESPETAAHPGPIVVHCSAGIGRTGCFIATRIGCQQLKARGEVDILGIVCQLRLDR 279
Query: 728 PAMVQTESIEPGQQFTWDHSSMEM 751
M+QT +Q+ + H ++ +
Sbjct: 280 GGMIQT-----AEQYQFLHHTLAL 298
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 35/88 (39%), Gaps = 30/88 (34%)
Query: 1711 LLFILKSSLESSGVNLPVGPLIVHCSAGVGRTGCFI------------------------ 1746
LL ++ ES GP++VHCSAG+GRTGCFI
Sbjct: 216 LLRLVAEVEESPETAAHPGPIVVHCSAGIGRTGCFIATRIGCQQLKARGEVDILGIVCQL 275
Query: 1747 ------VIDAKEQYQFCYHAALEYLGSF 1768
+I EQYQF +H Y G
Sbjct: 276 RLDRGGMIQTAEQYQFLHHTLALYAGQL 303
>pdb|3O4S|A Chain A, Crystal Structure Of Heptp With A Closed Wpd Loop And An
Ordered E- Loop
pdb|3O4T|A Chain A, Crystal Structure Of Heptp With An Open Wpd Loop And
Partially Depleted Active Site
pdb|3O4U|A Chain A, Crystal Structure Of Heptp With An Atypically Open Wpd
Loop
Length = 308
Score = 188 bits (478), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 100/242 (41%), Positives = 131/242 (54%), Gaps = 14/242 (5%)
Query: 241 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYR-KHNAYVATQGPLQETLGD 299
+ +K+RY ++ SRV L DYINANY GY K Y+ATQGP+ T+ D
Sbjct: 67 HASKDRYKTILPNPQSRVCLGRAQSQEDGDYINANYIRGYDGKEKVYIATQGPMPNTVSD 126
Query: 300 FWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYCIRTF 359
FW MVW+ IVM+T+L E + KC YWP+ ETYG + +QD++E Y +R
Sbjct: 127 FWEMVWQEEVSLIVMLTQLRE-GKEKCVHYWPTE-EETYGPFQIRIQDMKECPEYTVRQL 184
Query: 360 MINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVG 419
I ERR +K + F+AWPDH PE P L + V ES G
Sbjct: 185 TIQ--YQEERRSVKHILFSAWPDHQTPESAGPLLRLVAEVE---------ESPETAAHPG 233
Query: 420 PLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHD 479
P++VHCSAG+GRTGCFI +++K VDI G V LR R M+QT +QY F+H
Sbjct: 234 PIVVHCSAGIGRTGCFIATRIGCQQLKARGEVDILGIVCQLRLDRGGMIQTAEQYQFLHH 293
Query: 480 AL 481
L
Sbjct: 294 TL 295
Score = 188 bits (478), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 100/242 (41%), Positives = 131/242 (54%), Gaps = 14/242 (5%)
Query: 752 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYR-KHNAYVATQGPLQETLGD 810
+ +K+RY ++ SRV L DYINANY GY K Y+ATQGP+ T+ D
Sbjct: 67 HASKDRYKTILPNPQSRVCLGRAQSQEDGDYINANYIRGYDGKEKVYIATQGPMPNTVSD 126
Query: 811 FWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYCIRTF 870
FW MVW+ IVM+T+L E + KC YWP+ ETYG + +QD++E Y +R
Sbjct: 127 FWEMVWQEEVSLIVMLTQLRE-GKEKCVHYWPTE-EETYGPFQIRIQDMKECPEYTVRQL 184
Query: 871 MINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVG 930
I ERR +K + F+AWPDH PE P L + V ES G
Sbjct: 185 TIQ--YQEERRSVKHILFSAWPDHQTPESAGPLLRLVAEVE---------ESPETAAHPG 233
Query: 931 PLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHD 990
P++VHCSAG+GRTGCFI +++K VDI G V LR R M+QT +QY F+H
Sbjct: 234 PIVVHCSAGIGRTGCFIATRIGCQQLKARGEVDILGIVCQLRLDRGGMIQTAEQYQFLHH 293
Query: 991 AL 992
L
Sbjct: 294 TL 295
Score = 107 bits (268), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 99/205 (48%), Gaps = 36/205 (17%)
Query: 1292 PVRGKTEFKKLSNIRAEPSRFISAS---LPCNKHKNRLVHILPVESSRVCLTPVRGIEGS 1348
P + + EF K+ PS F+S +P + K+R ILP SRVCL + E
Sbjct: 42 PKQLEEEFLKI------PSNFVSPEDLDIPGHASKDRYKTILPNPQSRVCLGRAQSQEDG 95
Query: 1349 DYINASFIDGYRLRS-AYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGRYVLR- 1406
DYINA++I GY + YIATQGP+ +T DFW M+W+ +++VMLT+L+E +
Sbjct: 96 DYINANYIRGYDGKEKVYIATQGPMPNTVSDFWEMVWQEEVSLIVMLTQLREGKEKCVHY 155
Query: 1407 -----------EFKVTDARDATSRTLRQFQL--------------IDWPEQGVPKSGDGF 1441
+ ++ D ++ T+RQ + WP+ P+S
Sbjct: 156 WPTEEETYGPFQIRIQDMKECPEYTVRQLTIQYQEERRSVKHILFSAWPDHQTPESAGPL 215
Query: 1442 IDFIGQVHKTKEQFGQDGPITVHCS 1466
+ + +V ++ E GPI VHCS
Sbjct: 216 LRLVAEVEESPETAAHPGPIVVHCS 240
Score = 88.6 bits (218), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 84/176 (47%), Gaps = 10/176 (5%)
Query: 1495 IAYLVLFSQ-----EKCHQYWPSERSIRYEWFVVEPIAEYNMPQYVLREFKVTDARDATS 1549
++ +V+ +Q EKC YWP+E Y F + P+Y +R+ + +
Sbjct: 136 VSLIVMLTQLREGKEKCVHYWPTEEET-YGPFQIRIQDMKECPEYTVRQLTIQYQEE--R 192
Query: 1550 RTLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITL 1609
R+++ WP+ P+S + + +V ++ E GPI VHCSAG+GRTG FI
Sbjct: 193 RSVKHILFSAWPDHQTPESAGPLLRLVAEVEESPETAAHPGPIVVHCSAGIGRTGCFIAT 252
Query: 1610 SIVLERMQYEGVIDLFQTVRILRTQRPAMVQTEHLYTSSPFSEQLALDMREVPPGP 1665
I ++++ G +D+ V LR R M+QT Y LAL ++P P
Sbjct: 253 RIGCQQLKARGEVDILGIVCQLRLDRGGMIQTAEQYQF--LHHTLALYAGQLPEEP 306
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 109/264 (41%), Gaps = 39/264 (14%)
Query: 516 MELEFKKLSNIRAEPSRFISAS---LPCNKHKNRLVHILPVESSRVCLTPVRGDGFIDFI 572
+E EF K+ PS F+S +P + K+R ILP SRVCL + D+I
Sbjct: 45 LEEEFLKI------PSNFVSPEDLDIPGHASKDRYKTILPNPQSRVCLGRAQSQEDGDYI 98
Query: 573 ------GQVHKTKEQFGQDGPITVHCSRLAQHIENLKANDNLKFSQEYESIE------PG 620
G K K GP+ S + + + + + +Q E E P
Sbjct: 99 NANYIRGYDGKEKVYIATQGPMPNTVSDFWEMVWQEEVSLIVMLTQLREGKEKCVHYWPT 158
Query: 621 QQFTWDHSSMEMNKAKN--RYAN---VIAYDHSRVILSTV-------DGIPGRDG-FIDF 667
++ T+ + + K Y I Y R + + P G +
Sbjct: 159 EEETYGPFQIRIQDMKECPEYTVRQLTIQYQEERRSVKHILFSAWPDHQTPESAGPLLRL 218
Query: 668 IGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVIDLFQTVRILRTQR 727
+ +V ++ E GPI VHCSAG+GRTG FI I ++++ G +D+ V LR R
Sbjct: 219 VAEVEESPETAAHPGPIVVHCSAGIGRTGCFIATRIGCQQLKARGEVDILGIVCQLRLDR 278
Query: 728 PAMVQTESIEPGQQFTWDHSSMEM 751
M+QT +Q+ + H ++ +
Sbjct: 279 GGMIQT-----AEQYQFLHHTLAL 297
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 35/88 (39%), Gaps = 30/88 (34%)
Query: 1711 LLFILKSSLESSGVNLPVGPLIVHCSAGVGRTGCFI------------------------ 1746
LL ++ ES GP++VHCSAG+GRTGCFI
Sbjct: 215 LLRLVAEVEESPETAAHPGPIVVHCSAGIGRTGCFIATRIGCQQLKARGEVDILGIVCQL 274
Query: 1747 ------VIDAKEQYQFCYHAALEYLGSF 1768
+I EQYQF +H Y G
Sbjct: 275 RLDRGGMIQTAEQYQFLHHTLALYAGQL 302
>pdb|2A3K|A Chain A, Crystal Structure Of The Human Protein Tyrosine
Phosphatase, Ptpn7 (Heptp, Hematopoietic Protein
Tyrosine Phosphatase)
Length = 296
Score = 188 bits (477), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 100/242 (41%), Positives = 131/242 (54%), Gaps = 14/242 (5%)
Query: 241 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYR-KHNAYVATQGPLQETLGD 299
+ +K+RY ++ SRV L DYINANY GY K Y+ATQGP+ T+ D
Sbjct: 57 HASKDRYKTILPNPQSRVCLGRAQSQEDGDYINANYIRGYDGKEKVYIATQGPMPNTVSD 116
Query: 300 FWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYCIRTF 359
FW MVW+ IVM+T+L E + KC YWP+ ETYG + +QD++E Y +R
Sbjct: 117 FWEMVWQEEVSLIVMLTQLRE-GKEKCVHYWPTE-EETYGPFQIRIQDMKECPEYTVRQL 174
Query: 360 MINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVG 419
I ERR +K + F+AWPDH PE P L + V ES G
Sbjct: 175 TIQ--YQEERRSVKHILFSAWPDHQTPESAGPLLRLVAEVE---------ESPETAAHPG 223
Query: 420 PLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHD 479
P++VHCSAG+GRTGCFI +++K VDI G V LR R M+QT +QY F+H
Sbjct: 224 PIVVHCSAGIGRTGCFIATRIGCQQLKARGEVDILGIVCQLRLDRGGMIQTAEQYQFLHH 283
Query: 480 AL 481
L
Sbjct: 284 TL 285
Score = 188 bits (477), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 100/242 (41%), Positives = 131/242 (54%), Gaps = 14/242 (5%)
Query: 752 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYR-KHNAYVATQGPLQETLGD 810
+ +K+RY ++ SRV L DYINANY GY K Y+ATQGP+ T+ D
Sbjct: 57 HASKDRYKTILPNPQSRVCLGRAQSQEDGDYINANYIRGYDGKEKVYIATQGPMPNTVSD 116
Query: 811 FWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYCIRTF 870
FW MVW+ IVM+T+L E + KC YWP+ ETYG + +QD++E Y +R
Sbjct: 117 FWEMVWQEEVSLIVMLTQLRE-GKEKCVHYWPTE-EETYGPFQIRIQDMKECPEYTVRQL 174
Query: 871 MINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVG 930
I ERR +K + F+AWPDH PE P L + V ES G
Sbjct: 175 TIQ--YQEERRSVKHILFSAWPDHQTPESAGPLLRLVAEVE---------ESPETAAHPG 223
Query: 931 PLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHD 990
P++VHCSAG+GRTGCFI +++K VDI G V LR R M+QT +QY F+H
Sbjct: 224 PIVVHCSAGIGRTGCFIATRIGCQQLKARGEVDILGIVCQLRLDRGGMIQTAEQYQFLHH 283
Query: 991 AL 992
L
Sbjct: 284 TL 285
Score = 108 bits (269), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 100/206 (48%), Gaps = 36/206 (17%)
Query: 1291 TPVRGKTEFKKLSNIRAEPSRFISAS---LPCNKHKNRLVHILPVESSRVCLTPVRGIEG 1347
+P + + EF K+ PS F+S +P + K+R ILP SRVCL + E
Sbjct: 31 SPKQLEEEFLKI------PSNFVSPEDLDIPGHASKDRYKTILPNPQSRVCLGRAQSQED 84
Query: 1348 SDYINASFIDGYRLRS-AYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGRYVLR 1406
DYINA++I GY + YIATQGP+ +T DFW M+W+ +++VMLT+L+E +
Sbjct: 85 GDYINANYIRGYDGKEKVYIATQGPMPNTVSDFWEMVWQEEVSLIVMLTQLREGKEKCVH 144
Query: 1407 ------------EFKVTDARDATSRTLRQFQL--------------IDWPEQGVPKSGDG 1440
+ ++ D ++ T+RQ + WP+ P+S
Sbjct: 145 YWPTEEETYGPFQIRIQDMKECPEYTVRQLTIQYQEERRSVKHILFSAWPDHQTPESAGP 204
Query: 1441 FIDFIGQVHKTKEQFGQDGPITVHCS 1466
+ + +V ++ E GPI VHCS
Sbjct: 205 LLRLVAEVEESPETAAHPGPIVVHCS 230
Score = 88.6 bits (218), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 84/176 (47%), Gaps = 10/176 (5%)
Query: 1495 IAYLVLFSQ-----EKCHQYWPSERSIRYEWFVVEPIAEYNMPQYVLREFKVTDARDATS 1549
++ +V+ +Q EKC YWP+E Y F + P+Y +R+ + +
Sbjct: 126 VSLIVMLTQLREGKEKCVHYWPTEEET-YGPFQIRIQDMKECPEYTVRQLTIQYQEE--R 182
Query: 1550 RTLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITL 1609
R+++ WP+ P+S + + +V ++ E GPI VHCSAG+GRTG FI
Sbjct: 183 RSVKHILFSAWPDHQTPESAGPLLRLVAEVEESPETAAHPGPIVVHCSAGIGRTGCFIAT 242
Query: 1610 SIVLERMQYEGVIDLFQTVRILRTQRPAMVQTEHLYTSSPFSEQLALDMREVPPGP 1665
I ++++ G +D+ V LR R M+QT Y LAL ++P P
Sbjct: 243 RIGCQQLKARGEVDILGIVCQLRLDRGGMIQTAEQYQF--LHHTLALYAGQLPEEP 296
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 109/264 (41%), Gaps = 39/264 (14%)
Query: 516 MELEFKKLSNIRAEPSRFISAS---LPCNKHKNRLVHILPVESSRVCLTPVRGDGFIDFI 572
+E EF K+ PS F+S +P + K+R ILP SRVCL + D+I
Sbjct: 35 LEEEFLKI------PSNFVSPEDLDIPGHASKDRYKTILPNPQSRVCLGRAQSQEDGDYI 88
Query: 573 ------GQVHKTKEQFGQDGPITVHCSRLAQHIENLKANDNLKFSQEYESIE------PG 620
G K K GP+ S + + + + + +Q E E P
Sbjct: 89 NANYIRGYDGKEKVYIATQGPMPNTVSDFWEMVWQEEVSLIVMLTQLREGKEKCVHYWPT 148
Query: 621 QQFTWDHSSMEMNKAKN--RYAN---VIAYDHSRVILSTV-------DGIPGRDG-FIDF 667
++ T+ + + K Y I Y R + + P G +
Sbjct: 149 EEETYGPFQIRIQDMKECPEYTVRQLTIQYQEERRSVKHILFSAWPDHQTPESAGPLLRL 208
Query: 668 IGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVIDLFQTVRILRTQR 727
+ +V ++ E GPI VHCSAG+GRTG FI I ++++ G +D+ V LR R
Sbjct: 209 VAEVEESPETAAHPGPIVVHCSAGIGRTGCFIATRIGCQQLKARGEVDILGIVCQLRLDR 268
Query: 728 PAMVQTESIEPGQQFTWDHSSMEM 751
M+QT +Q+ + H ++ +
Sbjct: 269 GGMIQT-----AEQYQFLHHTLAL 287
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 35/88 (39%), Gaps = 30/88 (34%)
Query: 1711 LLFILKSSLESSGVNLPVGPLIVHCSAGVGRTGCFI------------------------ 1746
LL ++ ES GP++VHCSAG+GRTGCFI
Sbjct: 205 LLRLVAEVEESPETAAHPGPIVVHCSAGIGRTGCFIATRIGCQQLKARGEVDILGIVCQL 264
Query: 1747 ------VIDAKEQYQFCYHAALEYLGSF 1768
+I EQYQF +H Y G
Sbjct: 265 RLDRGGMIQTAEQYQFLHHTLALYAGQL 292
>pdb|2QDC|A Chain A, Crystal Structure Of The Heptp Catalytic Domain D236a
Mutant
Length = 309
Score = 186 bits (471), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 99/242 (40%), Positives = 130/242 (53%), Gaps = 14/242 (5%)
Query: 241 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYR-KHNAYVATQGPLQETLGD 299
+ +K+RY ++ SRV L DYINANY GY K Y+ATQGP+ T+ D
Sbjct: 68 HASKDRYKTILPNPQSRVCLGRAQSQEDGDYINANYIRGYDGKEKVYIATQGPMPNTVSD 127
Query: 300 FWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYCIRTF 359
FW MVW+ IVM+T+L E + KC YWP+ ETYG + +QD++E Y +R
Sbjct: 128 FWEMVWQEEVSLIVMLTQLRE-GKEKCVHYWPTE-EETYGPFQIRIQDMKECPEYTVRQL 185
Query: 360 MINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVG 419
I ERR +K + F+AWP H PE P L + V ES G
Sbjct: 186 TIQ--YQEERRSVKHILFSAWPAHQTPESAGPLLRLVAEVE---------ESPETAAHPG 234
Query: 420 PLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHD 479
P++VHCSAG+GRTGCFI +++K VDI G V LR R M+QT +QY F+H
Sbjct: 235 PIVVHCSAGIGRTGCFIATRIGCQQLKARGEVDILGIVCQLRLDRGGMIQTAEQYQFLHH 294
Query: 480 AL 481
L
Sbjct: 295 TL 296
Score = 186 bits (471), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 99/242 (40%), Positives = 130/242 (53%), Gaps = 14/242 (5%)
Query: 752 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYR-KHNAYVATQGPLQETLGD 810
+ +K+RY ++ SRV L DYINANY GY K Y+ATQGP+ T+ D
Sbjct: 68 HASKDRYKTILPNPQSRVCLGRAQSQEDGDYINANYIRGYDGKEKVYIATQGPMPNTVSD 127
Query: 811 FWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYCIRTF 870
FW MVW+ IVM+T+L E + KC YWP+ ETYG + +QD++E Y +R
Sbjct: 128 FWEMVWQEEVSLIVMLTQLRE-GKEKCVHYWPTE-EETYGPFQIRIQDMKECPEYTVRQL 185
Query: 871 MINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVG 930
I ERR +K + F+AWP H PE P L + V ES G
Sbjct: 186 TIQ--YQEERRSVKHILFSAWPAHQTPESAGPLLRLVAEVE---------ESPETAAHPG 234
Query: 931 PLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHD 990
P++VHCSAG+GRTGCFI +++K VDI G V LR R M+QT +QY F+H
Sbjct: 235 PIVVHCSAGIGRTGCFIATRIGCQQLKARGEVDILGIVCQLRLDRGGMIQTAEQYQFLHH 294
Query: 991 AL 992
L
Sbjct: 295 TL 296
Score = 107 bits (268), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 99/206 (48%), Gaps = 36/206 (17%)
Query: 1291 TPVRGKTEFKKLSNIRAEPSRFISAS---LPCNKHKNRLVHILPVESSRVCLTPVRGIEG 1347
+P + + EF K+ PS F+S +P + K+R ILP SRVCL + E
Sbjct: 42 SPKQLEEEFLKI------PSNFVSPEDLDIPGHASKDRYKTILPNPQSRVCLGRAQSQED 95
Query: 1348 SDYINASFIDGYRLR-SAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGRYVLR 1406
DYINA++I GY + YIATQGP+ +T DFW M+W+ +++VMLT+L+E +
Sbjct: 96 GDYINANYIRGYDGKEKVYIATQGPMPNTVSDFWEMVWQEEVSLIVMLTQLREGKEKCVH 155
Query: 1407 ------------EFKVTDARDATSRTLRQFQL--------------IDWPEQGVPKSGDG 1440
+ ++ D ++ T+RQ + WP P+S
Sbjct: 156 YWPTEEETYGPFQIRIQDMKECPEYTVRQLTIQYQEERRSVKHILFSAWPAHQTPESAGP 215
Query: 1441 FIDFIGQVHKTKEQFGQDGPITVHCS 1466
+ + +V ++ E GPI VHCS
Sbjct: 216 LLRLVAEVEESPETAAHPGPIVVHCS 241
Score = 88.2 bits (217), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 83/176 (47%), Gaps = 10/176 (5%)
Query: 1495 IAYLVLFSQ-----EKCHQYWPSERSIRYEWFVVEPIAEYNMPQYVLREFKVTDARDATS 1549
++ +V+ +Q EKC YWP+E Y F + P+Y +R+ + +
Sbjct: 137 VSLIVMLTQLREGKEKCVHYWPTEEET-YGPFQIRIQDMKECPEYTVRQLTIQYQEE--R 193
Query: 1550 RTLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITL 1609
R+++ WP P+S + + +V ++ E GPI VHCSAG+GRTG FI
Sbjct: 194 RSVKHILFSAWPAHQTPESAGPLLRLVAEVEESPETAAHPGPIVVHCSAGIGRTGCFIAT 253
Query: 1610 SIVLERMQYEGVIDLFQTVRILRTQRPAMVQTEHLYTSSPFSEQLALDMREVPPGP 1665
I ++++ G +D+ V LR R M+QT Y LAL ++P P
Sbjct: 254 RIGCQQLKARGEVDILGIVCQLRLDRGGMIQTAEQYQF--LHHTLALYAGQLPEEP 307
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 110/264 (41%), Gaps = 39/264 (14%)
Query: 516 MELEFKKLSNIRAEPSRFISAS---LPCNKHKNRLVHILPVESSRVCLTPVRGDGFIDFI 572
+E EF K+ PS F+S +P + K+R ILP SRVCL + D+I
Sbjct: 46 LEEEFLKI------PSNFVSPEDLDIPGHASKDRYKTILPNPQSRVCLGRAQSQEDGDYI 99
Query: 573 ------GQVHKTKEQFGQDGPITVHCSRLAQHIENLKANDNLKFSQEYESIE------PG 620
G K K GP+ S + + + + + +Q E E P
Sbjct: 100 NANYIRGYDGKEKVYIATQGPMPNTVSDFWEMVWQEEVSLIVMLTQLREGKEKCVHYWPT 159
Query: 621 QQFTWDHSSMEMNKAKN--RYAN---VIAYDHSR-----VILST--VDGIPGRDG-FIDF 667
++ T+ + + K Y I Y R ++ S P G +
Sbjct: 160 EEETYGPFQIRIQDMKECPEYTVRQLTIQYQEERRSVKHILFSAWPAHQTPESAGPLLRL 219
Query: 668 IGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVIDLFQTVRILRTQR 727
+ +V ++ E GPI VHCSAG+GRTG FI I ++++ G +D+ V LR R
Sbjct: 220 VAEVEESPETAAHPGPIVVHCSAGIGRTGCFIATRIGCQQLKARGEVDILGIVCQLRLDR 279
Query: 728 PAMVQTESIEPGQQFTWDHSSMEM 751
M+QT +Q+ + H ++ +
Sbjct: 280 GGMIQT-----AEQYQFLHHTLAL 298
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 35/88 (39%), Gaps = 30/88 (34%)
Query: 1711 LLFILKSSLESSGVNLPVGPLIVHCSAGVGRTGCFI------------------------ 1746
LL ++ ES GP++VHCSAG+GRTGCFI
Sbjct: 216 LLRLVAEVEESPETAAHPGPIVVHCSAGIGRTGCFIATRIGCQQLKARGEVDILGIVCQL 275
Query: 1747 ------VIDAKEQYQFCYHAALEYLGSF 1768
+I EQYQF +H Y G
Sbjct: 276 RLDRGGMIQTAEQYQFLHHTLALYAGQL 303
>pdb|3D42|A Chain A, Crystal Structure Of Heptp In Complex With A
Monophosphorylated Erk2 Peptide
pdb|3D44|A Chain A, Crystal Structure Of Heptp In Complex With A Dually
Phosphorylated Erk2 Peptide Mimetic
Length = 308
Score = 185 bits (470), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 99/242 (40%), Positives = 131/242 (54%), Gaps = 14/242 (5%)
Query: 241 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYR-KHNAYVATQGPLQETLGD 299
+ +K+RY +++ SRV L DYINANY GY K Y+ATQGP+ T+ D
Sbjct: 67 HASKDRYKDILPNPQSRVCLGRAQSQEDGDYINANYIRGYDGKEKVYIATQGPMPNTVSD 126
Query: 300 FWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYCIRTF 359
FW MVW+ IVM+T+L E + KC YWP+ ETYG + +QD++E Y +R
Sbjct: 127 FWEMVWQEEVSLIVMLTQLRE-GKEKCVHYWPTE-EETYGPFQIRIQDMKECPEYTVRQL 184
Query: 360 MINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVG 419
I ERR +K + F+AWPDH PE P L + V ES G
Sbjct: 185 TIQ--YQEERRSVKHILFSAWPDHQTPESAGPLLRLVAEVE---------ESPETAAHPG 233
Query: 420 PLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHD 479
P++VH SAG+GRTGCFI +++K VDI G V LR R M+QT +QY F+H
Sbjct: 234 PIVVHSSAGIGRTGCFIATRIGCQQLKARGEVDILGIVCQLRLDRGGMIQTAEQYQFLHH 293
Query: 480 AL 481
L
Sbjct: 294 TL 295
Score = 185 bits (470), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 99/242 (40%), Positives = 131/242 (54%), Gaps = 14/242 (5%)
Query: 752 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYR-KHNAYVATQGPLQETLGD 810
+ +K+RY +++ SRV L DYINANY GY K Y+ATQGP+ T+ D
Sbjct: 67 HASKDRYKDILPNPQSRVCLGRAQSQEDGDYINANYIRGYDGKEKVYIATQGPMPNTVSD 126
Query: 811 FWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYCIRTF 870
FW MVW+ IVM+T+L E + KC YWP+ ETYG + +QD++E Y +R
Sbjct: 127 FWEMVWQEEVSLIVMLTQLRE-GKEKCVHYWPTE-EETYGPFQIRIQDMKECPEYTVRQL 184
Query: 871 MINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVG 930
I ERR +K + F+AWPDH PE P L + V ES G
Sbjct: 185 TIQ--YQEERRSVKHILFSAWPDHQTPESAGPLLRLVAEVE---------ESPETAAHPG 233
Query: 931 PLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHD 990
P++VH SAG+GRTGCFI +++K VDI G V LR R M+QT +QY F+H
Sbjct: 234 PIVVHSSAGIGRTGCFIATRIGCQQLKARGEVDILGIVCQLRLDRGGMIQTAEQYQFLHH 293
Query: 991 AL 992
L
Sbjct: 294 TL 295
Score = 104 bits (260), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 99/206 (48%), Gaps = 36/206 (17%)
Query: 1291 TPVRGKTEFKKLSNIRAEPSRFISAS---LPCNKHKNRLVHILPVESSRVCLTPVRGIEG 1347
+P + + EF K+ PS F+S +P + K+R ILP SRVCL + E
Sbjct: 41 SPKQLEEEFLKI------PSNFVSPEDLDIPGHASKDRYKDILPNPQSRVCLGRAQSQED 94
Query: 1348 SDYINASFIDGYRLRS-AYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR---- 1402
DYINA++I GY + YIATQGP+ +T DFW M+W+ +++VMLT+L+E
Sbjct: 95 GDYINANYIRGYDGKEKVYIATQGPMPNTVSDFWEMVWQEEVSLIVMLTQLREGKEKCVH 154
Query: 1403 --------YVLREFKVTDARDATSRTLRQFQL--------------IDWPEQGVPKSGDG 1440
Y + ++ D ++ T+RQ + WP+ P+S
Sbjct: 155 YWPTEEETYGPFQIRIQDMKECPEYTVRQLTIQYQEERRSVKHILFSAWPDHQTPESAGP 214
Query: 1441 FIDFIGQVHKTKEQFGQDGPITVHCS 1466
+ + +V ++ E GPI VH S
Sbjct: 215 LLRLVAEVEESPETAAHPGPIVVHSS 240
Score = 84.3 bits (207), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 83/176 (47%), Gaps = 10/176 (5%)
Query: 1495 IAYLVLFSQ-----EKCHQYWPSERSIRYEWFVVEPIAEYNMPQYVLREFKVTDARDATS 1549
++ +V+ +Q EKC YWP+E Y F + P+Y +R+ + +
Sbjct: 136 VSLIVMLTQLREGKEKCVHYWPTEEET-YGPFQIRIQDMKECPEYTVRQLTIQYQEE--R 192
Query: 1550 RTLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITL 1609
R+++ WP+ P+S + + +V ++ E GPI VH SAG+GRTG FI
Sbjct: 193 RSVKHILFSAWPDHQTPESAGPLLRLVAEVEESPETAAHPGPIVVHSSAGIGRTGCFIAT 252
Query: 1610 SIVLERMQYEGVIDLFQTVRILRTQRPAMVQTEHLYTSSPFSEQLALDMREVPPGP 1665
I ++++ G +D+ V LR R M+QT Y LAL ++P P
Sbjct: 253 RIGCQQLKARGEVDILGIVCQLRLDRGGMIQTAEQYQF--LHHTLALYAGQLPEEP 306
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 108/264 (40%), Gaps = 39/264 (14%)
Query: 516 MELEFKKLSNIRAEPSRFISAS---LPCNKHKNRLVHILPVESSRVCLTPVRGDGFIDFI 572
+E EF K+ PS F+S +P + K+R ILP SRVCL + D+I
Sbjct: 45 LEEEFLKI------PSNFVSPEDLDIPGHASKDRYKDILPNPQSRVCLGRAQSQEDGDYI 98
Query: 573 ------GQVHKTKEQFGQDGPITVHCSRLAQHIENLKANDNLKFSQEYESIE------PG 620
G K K GP+ S + + + + + +Q E E P
Sbjct: 99 NANYIRGYDGKEKVYIATQGPMPNTVSDFWEMVWQEEVSLIVMLTQLREGKEKCVHYWPT 158
Query: 621 QQFTWDHSSMEMNKAKN--RYAN---VIAYDHSRVILSTV-------DGIPGRDG-FIDF 667
++ T+ + + K Y I Y R + + P G +
Sbjct: 159 EEETYGPFQIRIQDMKECPEYTVRQLTIQYQEERRSVKHILFSAWPDHQTPESAGPLLRL 218
Query: 668 IGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVIDLFQTVRILRTQR 727
+ +V ++ E GPI VH SAG+GRTG FI I ++++ G +D+ V LR R
Sbjct: 219 VAEVEESPETAAHPGPIVVHSSAGIGRTGCFIATRIGCQQLKARGEVDILGIVCQLRLDR 278
Query: 728 PAMVQTESIEPGQQFTWDHSSMEM 751
M+QT +Q+ + H ++ +
Sbjct: 279 GGMIQT-----AEQYQFLHHTLAL 297
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 34/88 (38%), Gaps = 30/88 (34%)
Query: 1711 LLFILKSSLESSGVNLPVGPLIVHCSAGVGRTGCFI------------------------ 1746
LL ++ ES GP++VH SAG+GRTGCFI
Sbjct: 215 LLRLVAEVEESPETAAHPGPIVVHSSAGIGRTGCFIATRIGCQQLKARGEVDILGIVCQL 274
Query: 1747 ------VIDAKEQYQFCYHAALEYLGSF 1768
+I EQYQF +H Y G
Sbjct: 275 RLDRGGMIQTAEQYQFLHHTLALYAGQL 302
>pdb|2HVL|A Chain A, Crystal Structure Of The Heptp Catalytic Domain C270s
Mutant
pdb|2QDP|A Chain A, Crystal Structure Of The Heptp Catalytic Domain C270s
Mutant Crystallized In Ammonium Acetate
Length = 309
Score = 184 bits (468), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 99/242 (40%), Positives = 130/242 (53%), Gaps = 14/242 (5%)
Query: 241 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYR-KHNAYVATQGPLQETLGD 299
+ +K+RY ++ SRV L DYINANY GY K Y+ATQGP+ T+ D
Sbjct: 68 HASKDRYKTILPNPQSRVCLGRAQSQEDGDYINANYIRGYDGKEKVYIATQGPMPNTVSD 127
Query: 300 FWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYCIRTF 359
FW MVW+ IVM+T+L E + KC YWP+ ETYG + +QD++E Y +R
Sbjct: 128 FWEMVWQEEVSLIVMLTQLRE-GKEKCVHYWPTE-EETYGPFQIRIQDMKECPEYTVRQL 185
Query: 360 MINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVG 419
I ERR +K + F+AWPDH PE P L + V ES G
Sbjct: 186 TIQ--YQEERRSVKHILFSAWPDHQTPESAGPLLRLVAEVE---------ESPETAAHPG 234
Query: 420 PLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHD 479
P++VH SAG+GRTGCFI +++K VDI G V LR R M+QT +QY F+H
Sbjct: 235 PIVVHSSAGIGRTGCFIATRIGCQQLKARGEVDILGIVCQLRLDRGGMIQTAEQYQFLHH 294
Query: 480 AL 481
L
Sbjct: 295 TL 296
Score = 184 bits (468), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 99/242 (40%), Positives = 130/242 (53%), Gaps = 14/242 (5%)
Query: 752 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYR-KHNAYVATQGPLQETLGD 810
+ +K+RY ++ SRV L DYINANY GY K Y+ATQGP+ T+ D
Sbjct: 68 HASKDRYKTILPNPQSRVCLGRAQSQEDGDYINANYIRGYDGKEKVYIATQGPMPNTVSD 127
Query: 811 FWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYCIRTF 870
FW MVW+ IVM+T+L E + KC YWP+ ETYG + +QD++E Y +R
Sbjct: 128 FWEMVWQEEVSLIVMLTQLRE-GKEKCVHYWPTE-EETYGPFQIRIQDMKECPEYTVRQL 185
Query: 871 MINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVG 930
I ERR +K + F+AWPDH PE P L + V ES G
Sbjct: 186 TIQ--YQEERRSVKHILFSAWPDHQTPESAGPLLRLVAEVE---------ESPETAAHPG 234
Query: 931 PLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHD 990
P++VH SAG+GRTGCFI +++K VDI G V LR R M+QT +QY F+H
Sbjct: 235 PIVVHSSAGIGRTGCFIATRIGCQQLKARGEVDILGIVCQLRLDRGGMIQTAEQYQFLHH 294
Query: 991 AL 992
L
Sbjct: 295 TL 296
Score = 104 bits (259), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 99/206 (48%), Gaps = 36/206 (17%)
Query: 1291 TPVRGKTEFKKLSNIRAEPSRFISAS---LPCNKHKNRLVHILPVESSRVCLTPVRGIEG 1347
+P + + EF K+ PS F+S +P + K+R ILP SRVCL + E
Sbjct: 42 SPKQLEEEFLKI------PSNFVSPEDLDIPGHASKDRYKTILPNPQSRVCLGRAQSQED 95
Query: 1348 SDYINASFIDGYRLRS-AYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGRYVLR 1406
DYINA++I GY + YIATQGP+ +T DFW M+W+ +++VMLT+L+E +
Sbjct: 96 GDYINANYIRGYDGKEKVYIATQGPMPNTVSDFWEMVWQEEVSLIVMLTQLREGKEKCVH 155
Query: 1407 ------------EFKVTDARDATSRTLRQFQL--------------IDWPEQGVPKSGDG 1440
+ ++ D ++ T+RQ + WP+ P+S
Sbjct: 156 YWPTEEETYGPFQIRIQDMKECPEYTVRQLTIQYQEERRSVKHILFSAWPDHQTPESAGP 215
Query: 1441 FIDFIGQVHKTKEQFGQDGPITVHCS 1466
+ + +V ++ E GPI VH S
Sbjct: 216 LLRLVAEVEESPETAAHPGPIVVHSS 241
Score = 84.7 bits (208), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 83/176 (47%), Gaps = 10/176 (5%)
Query: 1495 IAYLVLFSQ-----EKCHQYWPSERSIRYEWFVVEPIAEYNMPQYVLREFKVTDARDATS 1549
++ +V+ +Q EKC YWP+E Y F + P+Y +R+ + +
Sbjct: 137 VSLIVMLTQLREGKEKCVHYWPTEEET-YGPFQIRIQDMKECPEYTVRQLTIQYQEE--R 193
Query: 1550 RTLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITL 1609
R+++ WP+ P+S + + +V ++ E GPI VH SAG+GRTG FI
Sbjct: 194 RSVKHILFSAWPDHQTPESAGPLLRLVAEVEESPETAAHPGPIVVHSSAGIGRTGCFIAT 253
Query: 1610 SIVLERMQYEGVIDLFQTVRILRTQRPAMVQTEHLYTSSPFSEQLALDMREVPPGP 1665
I ++++ G +D+ V LR R M+QT Y LAL ++P P
Sbjct: 254 RIGCQQLKARGEVDILGIVCQLRLDRGGMIQTAEQYQF--LHHTLALYAGQLPEEP 307
Score = 64.7 bits (156), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 108/264 (40%), Gaps = 39/264 (14%)
Query: 516 MELEFKKLSNIRAEPSRFISAS---LPCNKHKNRLVHILPVESSRVCLTPVRGDGFIDFI 572
+E EF K+ PS F+S +P + K+R ILP SRVCL + D+I
Sbjct: 46 LEEEFLKI------PSNFVSPEDLDIPGHASKDRYKTILPNPQSRVCLGRAQSQEDGDYI 99
Query: 573 ------GQVHKTKEQFGQDGPITVHCSRLAQHIENLKANDNLKFSQEYESIE------PG 620
G K K GP+ S + + + + + +Q E E P
Sbjct: 100 NANYIRGYDGKEKVYIATQGPMPNTVSDFWEMVWQEEVSLIVMLTQLREGKEKCVHYWPT 159
Query: 621 QQFTWDHSSMEMNKAKN--RYAN---VIAYDHSRVILSTV-------DGIPGRDG-FIDF 667
++ T+ + + K Y I Y R + + P G +
Sbjct: 160 EEETYGPFQIRIQDMKECPEYTVRQLTIQYQEERRSVKHILFSAWPDHQTPESAGPLLRL 219
Query: 668 IGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVIDLFQTVRILRTQR 727
+ +V ++ E GPI VH SAG+GRTG FI I ++++ G +D+ V LR R
Sbjct: 220 VAEVEESPETAAHPGPIVVHSSAGIGRTGCFIATRIGCQQLKARGEVDILGIVCQLRLDR 279
Query: 728 PAMVQTESIEPGQQFTWDHSSMEM 751
M+QT +Q+ + H ++ +
Sbjct: 280 GGMIQT-----AEQYQFLHHTLAL 298
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 34/88 (38%), Gaps = 30/88 (34%)
Query: 1711 LLFILKSSLESSGVNLPVGPLIVHCSAGVGRTGCFI------------------------ 1746
LL ++ ES GP++VH SAG+GRTGCFI
Sbjct: 216 LLRLVAEVEESPETAAHPGPIVVHSSAGIGRTGCFIATRIGCQQLKARGEVDILGIVCQL 275
Query: 1747 ------VIDAKEQYQFCYHAALEYLGSF 1768
+I EQYQF +H Y G
Sbjct: 276 RLDRGGMIQTAEQYQFLHHTLALYAGQL 303
>pdb|1WCH|A Chain A, Crystal Structure Of Ptpl1 Human Tyrosine Phosphatase
Mutated In Colorectal Cancer - Evidence For A Second
Phosphotyrosine Substrate Recognition Pocket
Length = 315
Score = 184 bits (466), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 107/299 (35%), Positives = 156/299 (52%), Gaps = 28/299 (9%)
Query: 704 VLERMQYEGVIDLFQTVRILRTQRPAMVQTESIEPGQQFT-WDH---SSMEMNKAKNRYA 759
VL +Y G +L +R+LR + ++ +E Q+ D + N+ KNRY
Sbjct: 24 VLPSGKYTGA-NLKSVIRVLRGLLDQGIPSKELENLQELKPLDQCLIGQTKENRRKNRYK 82
Query: 760 NVIAYDHSRVILSTVDGIPGSDYINANYCD--GYRKHNAYVATQGPLQETLGDFWRMVWE 817
N++ YD +RV L G YINA++ ++ Y+A QGPL T+GDFW+M+WE
Sbjct: 83 NILPYDATRVPLGDEGG-----YINASFIKIPVGKEEFVYIACQGPLPTTVGDFWQMIWE 137
Query: 818 LRSVTIVMMTKLEERTRIKCDQYWPS---RGTETYGHITVTLQDVQELASYCIRTFMINK 874
+S I MMT+ E +IKC +YWP+ + T + + L +Q+L + +R +
Sbjct: 138 QKSTVIAMMTQEVEGEKIKCQRYWPNILGKTTMVSNRLRLALVRMQQLKGFVVRAMTLED 197
Query: 875 GADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIV 934
E R I L FTAWPDH P P L F+ +R ++ GP+I
Sbjct: 198 IQTREVRHISHLNFTAWPDHDTPSQPDDLLTFISYMRHIHRS-------------GPIIT 244
Query: 935 HCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALL 993
HCSAG+GR+G I ID ++ I D DI V C+R QR+ MVQTEDQY+F + +L
Sbjct: 245 HCSAGIGRSGTLICIDVVLGLISQDLDFDISDLVRCMRLQRHGMVQTEDQYIFCYQVIL 303
Score = 182 bits (463), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 96/247 (38%), Positives = 135/247 (54%), Gaps = 23/247 (9%)
Query: 241 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCD--GYRKHNAYVATQGPLQETLG 298
N+ KNRY N++ YD +RV L G YINA++ ++ Y+A QGPL T+G
Sbjct: 75 NRRKNRYKNILPYDATRVPLGDEGG-----YINASFIKIPVGKEEFVYIACQGPLPTTVG 129
Query: 299 DFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPS---RGTETYGHITVTLQDVQELASYC 355
DFW+M+WE +S I MMT+ E +IKC +YWP+ + T + + L +Q+L +
Sbjct: 130 DFWQMIWEQKSTVIAMMTQEVEGEKIKCQRYWPNILGKTTMVSNRLRLALVRMQQLKGFV 189
Query: 356 IRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVN 415
+R + E R I L FTAWPDH P P L F+ +R ++
Sbjct: 190 VRAMTLEDIQTREVRHISHLNFTAWPDHDTPSQPDDLLTFISYMRHIHRS---------- 239
Query: 416 LPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYM 475
GP+I HCSAG+GR+G I ID ++ I D DI V C+R QR+ MVQTEDQY+
Sbjct: 240 ---GPIITHCSAGIGRSGTLICIDVVLGLISQDLDFDISDLVRCMRLQRHGMVQTEDQYI 296
Query: 476 FIHDALL 482
F + +L
Sbjct: 297 FCYQVIL 303
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 82/185 (44%), Gaps = 50/185 (27%)
Query: 1320 NKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFID--GYRLRSAYIATQGPLADTTE 1377
N+ KNR +ILP +++RV L G EG YINASFI + YIA QGPL T
Sbjct: 75 NRRKNRYKNILPYDATRVPL----GDEGG-YINASFIKIPVGKEEFVYIACQGPLPTTVG 129
Query: 1378 DFWRMLWEHNSTIVVMLT---------------------------------KLKEMGRYV 1404
DFW+M+WE ST++ M+T +++++ +V
Sbjct: 130 DFWQMIWEQKSTVIAMMTQEVEGEKIKCQRYWPNILGKTTMVSNRLRLALVRMQQLKGFV 189
Query: 1405 LREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDG---FIDFIGQVHKTKEQFGQDGPI 1461
+R + D + R + WP+ P D FI ++ +H++ GPI
Sbjct: 190 VRAMTLEDIQTREVRHISHLNFTAWPDHDTPSQPDDLLTFISYMRHIHRS-------GPI 242
Query: 1462 TVHCS 1466
HCS
Sbjct: 243 ITHCS 247
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 69/147 (46%), Gaps = 13/147 (8%)
Query: 1505 KCHQYWPS---ERSIRYEWFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQLIDWP 1561
KC +YWP+ + ++ + + + +V+R + D + R + WP
Sbjct: 156 KCQRYWPNILGKTTMVSNRLRLALVRMQQLKGFVVRAMTLEDIQTREVRHISHLNFTAWP 215
Query: 1562 EQGVPKSGDG---FIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQY 1618
+ P D FI ++ +H++ GPI HCSAG+GR+G I + +VL +
Sbjct: 216 DHDTPSQPDDLLTFISYMRHIHRS-------GPIITHCSAGIGRSGTLICIDVVLGLISQ 268
Query: 1619 EGVIDLFQTVRILRTQRPAMVQTEHLY 1645
+ D+ VR +R QR MVQTE Y
Sbjct: 269 DLDFDISDLVRCMRLQRHGMVQTEDQY 295
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 94/226 (41%), Gaps = 40/226 (17%)
Query: 541 NKHKNRLVHILPVESSRVCLTPVRGDGFIDFIGQVHKTKEQF---GQDGPITVHCSRLAQ 597
N+ KNR +ILP +++RV L G FI ++ KE+F GP+ Q
Sbjct: 75 NRRKNRYKNILPYDATRVPLGDEGGYINASFI-KIPVGKEEFVYIACQGPLPTTVGDFWQ 133
Query: 598 HIENLKANDNLKFSQEYESIEPGQQFTWDH----SSMEMNKAKNRYANVIAYDHSRVILS 653
I K+ +QE E + Q W + ++M N+ + + V
Sbjct: 134 MIWEQKSTVIAMMTQEVEGEKIKCQRYWPNILGKTTMVSNRLRLALVRMQQLKGFVVRAM 193
Query: 654 TVDGIPGRD-------------------------GFIDFIGQVHKTKEQFGQDGPITVHC 688
T++ I R+ FI ++ +H++ GPI HC
Sbjct: 194 TLEDIQTREVRHISHLNFTAWPDHDTPSQPDDLLTFISYMRHIHRS-------GPIITHC 246
Query: 689 SAGVGRTGVFITLSIVLERMQYEGVIDLFQTVRILRTQRPAMVQTE 734
SAG+GR+G I + +VL + + D+ VR +R QR MVQTE
Sbjct: 247 SAGIGRSGTLICIDVVLGLISQDLDFDISDLVRCMRLQRHGMVQTE 292
Score = 38.5 bits (88), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 17/22 (77%)
Query: 1729 GPLIVHCSAGVGRTGCFIVIDA 1750
GP+I HCSAG+GR+G I ID
Sbjct: 240 GPIITHCSAGIGRSGTLICIDV 261
>pdb|2QDM|A Chain A, Crystal Structure Of The Heptp Catalytic Domain
C270sD236AQ314A Mutant
Length = 309
Score = 180 bits (456), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 97/242 (40%), Positives = 128/242 (52%), Gaps = 14/242 (5%)
Query: 241 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYR-KHNAYVATQGPLQETLGD 299
+ +K+RY ++ SRV L DYINANY GY K Y+ATQGP+ T+ D
Sbjct: 68 HASKDRYKTILPNPQSRVCLGRAQSQEDGDYINANYIRGYDGKEKVYIATQGPMPNTVSD 127
Query: 300 FWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYCIRTF 359
FW MVW+ IVM+T+L E + KC YWP+ ETYG + +QD++E Y +R
Sbjct: 128 FWEMVWQEEVSLIVMLTQLRE-GKEKCVHYWPTE-EETYGPFQIRIQDMKECPEYTVRQL 185
Query: 360 MINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVG 419
I ERR +K + F+AWP H PE P L + V ES G
Sbjct: 186 TIQ--YQEERRSVKHILFSAWPAHQTPESAGPLLRLVAEVE---------ESPETAAHPG 234
Query: 420 PLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHD 479
P++VH SAG+GRTGCFI +++K VDI G V LR R M+ T +QY F+H
Sbjct: 235 PIVVHSSAGIGRTGCFIATRIGCQQLKARGEVDILGIVCQLRLDRGGMIATAEQYQFLHH 294
Query: 480 AL 481
L
Sbjct: 295 TL 296
Score = 180 bits (456), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 97/242 (40%), Positives = 128/242 (52%), Gaps = 14/242 (5%)
Query: 752 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYR-KHNAYVATQGPLQETLGD 810
+ +K+RY ++ SRV L DYINANY GY K Y+ATQGP+ T+ D
Sbjct: 68 HASKDRYKTILPNPQSRVCLGRAQSQEDGDYINANYIRGYDGKEKVYIATQGPMPNTVSD 127
Query: 811 FWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYCIRTF 870
FW MVW+ IVM+T+L E + KC YWP+ ETYG + +QD++E Y +R
Sbjct: 128 FWEMVWQEEVSLIVMLTQLRE-GKEKCVHYWPTE-EETYGPFQIRIQDMKECPEYTVRQL 185
Query: 871 MINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVG 930
I ERR +K + F+AWP H PE P L + V ES G
Sbjct: 186 TIQ--YQEERRSVKHILFSAWPAHQTPESAGPLLRLVAEVE---------ESPETAAHPG 234
Query: 931 PLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHD 990
P++VH SAG+GRTGCFI +++K VDI G V LR R M+ T +QY F+H
Sbjct: 235 PIVVHSSAGIGRTGCFIATRIGCQQLKARGEVDILGIVCQLRLDRGGMIATAEQYQFLHH 294
Query: 991 AL 992
L
Sbjct: 295 TL 296
Score = 103 bits (257), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 98/206 (47%), Gaps = 36/206 (17%)
Query: 1291 TPVRGKTEFKKLSNIRAEPSRFISAS---LPCNKHKNRLVHILPVESSRVCLTPVRGIEG 1347
+P + + EF K+ PS F+S +P + K+R ILP SRVCL + E
Sbjct: 42 SPKQLEEEFLKI------PSNFVSPEDLDIPGHASKDRYKTILPNPQSRVCLGRAQSQED 95
Query: 1348 SDYINASFIDGYRLR-SAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGRYVLR 1406
DYINA++I GY + YIATQGP+ +T DFW M+W+ +++VMLT+L+E +
Sbjct: 96 GDYINANYIRGYDGKEKVYIATQGPMPNTVSDFWEMVWQEEVSLIVMLTQLREGKEKCVH 155
Query: 1407 ------------EFKVTDARDATSRTLRQFQL--------------IDWPEQGVPKSGDG 1440
+ ++ D ++ T+RQ + WP P+S
Sbjct: 156 YWPTEEETYGPFQIRIQDMKECPEYTVRQLTIQYQEERRSVKHILFSAWPAHQTPESAGP 215
Query: 1441 FIDFIGQVHKTKEQFGQDGPITVHCS 1466
+ + +V ++ E GPI VH S
Sbjct: 216 LLRLVAEVEESPETAAHPGPIVVHSS 241
Score = 81.6 bits (200), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 81/176 (46%), Gaps = 10/176 (5%)
Query: 1495 IAYLVLFSQ-----EKCHQYWPSERSIRYEWFVVEPIAEYNMPQYVLREFKVTDARDATS 1549
++ +V+ +Q EKC YWP+E Y F + P+Y +R+ + +
Sbjct: 137 VSLIVMLTQLREGKEKCVHYWPTEEET-YGPFQIRIQDMKECPEYTVRQLTIQYQEE--R 193
Query: 1550 RTLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITL 1609
R+++ WP P+S + + +V ++ E GPI VH SAG+GRTG FI
Sbjct: 194 RSVKHILFSAWPAHQTPESAGPLLRLVAEVEESPETAAHPGPIVVHSSAGIGRTGCFIAT 253
Query: 1610 SIVLERMQYEGVIDLFQTVRILRTQRPAMVQTEHLYTSSPFSEQLALDMREVPPGP 1665
I ++++ G +D+ V LR R M+ T Y LAL ++P P
Sbjct: 254 RIGCQQLKARGEVDILGIVCQLRLDRGGMIATAEQYQF--LHHTLALYAGQLPEEP 307
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 108/264 (40%), Gaps = 39/264 (14%)
Query: 516 MELEFKKLSNIRAEPSRFISAS---LPCNKHKNRLVHILPVESSRVCLTPVRGDGFIDFI 572
+E EF K+ PS F+S +P + K+R ILP SRVCL + D+I
Sbjct: 46 LEEEFLKI------PSNFVSPEDLDIPGHASKDRYKTILPNPQSRVCLGRAQSQEDGDYI 99
Query: 573 ------GQVHKTKEQFGQDGPITVHCSRLAQHIENLKANDNLKFSQEYESIE------PG 620
G K K GP+ S + + + + + +Q E E P
Sbjct: 100 NANYIRGYDGKEKVYIATQGPMPNTVSDFWEMVWQEEVSLIVMLTQLREGKEKCVHYWPT 159
Query: 621 QQFTWDHSSMEMNKAKN--RYAN---VIAYDHSR-----VILST--VDGIPGRDG-FIDF 667
++ T+ + + K Y I Y R ++ S P G +
Sbjct: 160 EEETYGPFQIRIQDMKECPEYTVRQLTIQYQEERRSVKHILFSAWPAHQTPESAGPLLRL 219
Query: 668 IGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVIDLFQTVRILRTQR 727
+ +V ++ E GPI VH SAG+GRTG FI I ++++ G +D+ V LR R
Sbjct: 220 VAEVEESPETAAHPGPIVVHSSAGIGRTGCFIATRIGCQQLKARGEVDILGIVCQLRLDR 279
Query: 728 PAMVQTESIEPGQQFTWDHSSMEM 751
M+ T +Q+ + H ++ +
Sbjct: 280 GGMIAT-----AEQYQFLHHTLAL 298
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 34/88 (38%), Gaps = 30/88 (34%)
Query: 1711 LLFILKSSLESSGVNLPVGPLIVHCSAGVGRTGCFI------------------------ 1746
LL ++ ES GP++VH SAG+GRTGCFI
Sbjct: 216 LLRLVAEVEESPETAAHPGPIVVHSSAGIGRTGCFIATRIGCQQLKARGEVDILGIVCQL 275
Query: 1747 ------VIDAKEQYQFCYHAALEYLGSF 1768
+I EQYQF +H Y G
Sbjct: 276 RLDRGGMIATAEQYQFLHHTLALYAGQL 303
>pdb|2I75|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase N4
(Ptpn4)
Length = 320
Score = 176 bits (445), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 102/273 (37%), Positives = 143/273 (52%), Gaps = 24/273 (8%)
Query: 217 KFSQEYESIEPGQQFTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANY 276
+F Q Y +PG T + + N +KNRY ++ YD +RVIL DYINANY
Sbjct: 50 QFDQLYRK-KPG--MTMSCAKLPQNISKNRYRDISPYDATRVILKG-----NEDYINANY 101
Query: 277 CD----GYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPS 332
+ N Y+A QGPL T DFW+M WE S +VM+T ER R+KC QYWP
Sbjct: 102 INMEIPSSSIINQYIACQGPLPHTCTDFWQMTWEQGSSMVVMLTTQVERGRVKCHQYWPE 161
Query: 333 -RGTETYGHITVTLQDVQELASYCIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAP 391
G+ +YG VT + +Y R + +E R + Q+Q+ AWPDHGVP+ +
Sbjct: 162 PTGSSSYGCYQVTCHSEEGNTAYIFRKMTLFNQEKNESRPLTQIQYIAWPDHGVPDDSSD 221
Query: 392 FLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTV 451
FL F+ VR G P++VHCSAG+GRTG I ++ + I+ ++ V
Sbjct: 222 FLDFVCHVRNKRAGKEE-----------PVVVHCSAGIGRTGVLITMETAMCLIECNQPV 270
Query: 452 DIYGHVTCLRAQRNYMVQTEDQYMFIHDALLEA 484
V +R QR M+QT QY F+ +A+L+
Sbjct: 271 YPLDIVRTMRDQRAMMIQTPSQYRFVCEAILKV 303
Score = 174 bits (441), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 99/264 (37%), Positives = 139/264 (52%), Gaps = 23/264 (8%)
Query: 737 EPGQQFTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCD----GYR 792
+PG T + + N +KNRY ++ YD +RVIL DYINANY +
Sbjct: 58 KPG--MTMSCAKLPQNISKNRYRDISPYDATRVILKG-----NEDYINANYINMEIPSSS 110
Query: 793 KHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPS-RGTETYGH 851
N Y+A QGPL T DFW+M WE S +VM+T ER R+KC QYWP G+ +YG
Sbjct: 111 IINQYIACQGPLPHTCTDFWQMTWEQGSSMVVMLTTQVERGRVKCHQYWPEPTGSSSYGC 170
Query: 852 ITVTLQDVQELASYCIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVR 911
VT + +Y R + +E R + Q+Q+ AWPDHGVP+ + FL F+ VR
Sbjct: 171 YQVTCHSEEGNTAYIFRKMTLFNQEKNESRPLTQIQYIAWPDHGVPDDSSDFLDFVCHVR 230
Query: 912 AMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCL 971
G P++VHCSAG+GRTG I ++ + I+ ++ V V +
Sbjct: 231 NKRAGKEE-----------PVVVHCSAGIGRTGVLITMETAMCLIECNQPVYPLDIVRTM 279
Query: 972 RAQRNYMVQTEDQYMFIHDALLEA 995
R QR M+QT QY F+ +A+L+
Sbjct: 280 RDQRAMMIQTPSQYRFVCEAILKV 303
Score = 108 bits (269), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/206 (34%), Positives = 100/206 (48%), Gaps = 45/206 (21%)
Query: 1297 TEFKKLSNIRAEPSRFIS-ASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASF 1355
T+F +L R +P +S A LP N KNR I P +++RV L +G E DYINA++
Sbjct: 49 TQFDQL--YRKKPGMTMSCAKLPQNISKNRYRDISPYDATRVIL---KGNE--DYINANY 101
Query: 1356 ID----GYRLRSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR--------- 1402
I+ + + YIA QGPL T DFW+M WE S++VVMLT E GR
Sbjct: 102 INMEIPSSSIINQYIACQGPLPHTCTDFWQMTWEQGSSMVVMLTTQVERGRVKCHQYWPE 161
Query: 1403 ----------------------YVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDG 1440
Y+ R+ + + SR L Q Q I WP+ GVP
Sbjct: 162 PTGSSSYGCYQVTCHSEEGNTAYIFRKMTLFNQEKNESRPLTQIQYIAWPDHGVPDDSSD 221
Query: 1441 FIDFIGQVHKTKEQFGQDGPITVHCS 1466
F+DF+ H ++ G++ P+ VHCS
Sbjct: 222 FLDFV--CHVRNKRAGKEEPVVVHCS 245
Score = 101 bits (251), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 79/154 (51%), Gaps = 3/154 (1%)
Query: 1493 VLIAYLVLFSQEKCHQYWPSER-SIRYEWFVVEPIAEYNMPQYVLREFKVTDARDATSRT 1551
V++ V + KCHQYWP S Y + V +E Y+ R+ + + SR
Sbjct: 142 VMLTTQVERGRVKCHQYWPEPTGSSSYGCYQVTCHSEEGNTAYIFRKMTLFNQEKNESRP 201
Query: 1552 LRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSI 1611
L Q Q I WP+ GVP F+DF+ H ++ G++ P+ VHCSAG+GRTGV IT+
Sbjct: 202 LTQIQYIAWPDHGVPDDSSDFLDFV--CHVRNKRAGKEEPVVVHCSAGIGRTGVLITMET 259
Query: 1612 VLERMQYEGVIDLFQTVRILRTQRPAMVQTEHLY 1645
+ ++ + VR +R QR M+QT Y
Sbjct: 260 AMCLIECNQPVYPLDIVRTMRDQRAMMIQTPSQY 293
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 657 GIPGRDG-FIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVID 715
G+P F+DF+ H ++ G++ P+ VHCSAG+GRTGV IT+ + ++ +
Sbjct: 214 GVPDDSSDFLDFV--CHVRNKRAGKEEPVVVHCSAGIGRTGVLITMETAMCLIECNQPVY 271
Query: 716 LFQTVRILRTQRPAMVQTES 735
VR +R QR M+QT S
Sbjct: 272 PLDIVRTMRDQRAMMIQTPS 291
Score = 35.4 bits (80), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 1730 PLIVHCSAGVGRTGCFIVIDA 1750
P++VHCSAG+GRTG I ++
Sbjct: 239 PVVVHCSAGIGRTGVLITMET 259
>pdb|1JLN|A Chain A, Crystal Structure Of The Catalytic Domain Of Protein
Tyrosine Phosphatase Ptp-SlBR7
Length = 297
Score = 175 bits (444), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 101/243 (41%), Positives = 138/243 (56%), Gaps = 21/243 (8%)
Query: 244 KNRYANVIAYDHSRVIL---STVDGIPGSDYINANYCDGYR-KHNAYVATQGPLQETLGD 299
KNRY ++ SRV L + D + S YINANY GY K A++ATQGP+ T+ D
Sbjct: 59 KNRYKTILPNPLSRVCLRPKNITDSL--STYINANYIRGYSGKEKAFIATQGPMINTVND 116
Query: 300 FWRMVWELRSVTIVMMTKLEERTRIKCDQYWP-SRGTETYGHITVTLQDVQELASYCIRT 358
FW+MVW+ S IVM+TKL+E+ KC YWP RG YG + V + V E +Y IR
Sbjct: 117 FWQMVWQEDSPVIVMITKLKEKNE-KCVLYWPEKRGI--YGKVEVLVTGVTECDNYTIRN 173
Query: 359 FMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPV 418
++ +G+ ++ +K +T+WPDH P+ P L + V + L S G
Sbjct: 174 LVLKQGSHTQH--VKHYWYTSWPDHKTPDSAQPLLQLMLDVEE-----DRLASEGR---- 222
Query: 419 GPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIH 478
GP++VHCSAG+GRTGCFI +++K + VD V LR R MVQT +QY F+H
Sbjct: 223 GPVVVHCSAGIGRTGCFIATSIGCQQLKEEGVVDALSIVCQLRVDRGGMVQTSEQYEFVH 282
Query: 479 DAL 481
AL
Sbjct: 283 HAL 285
Score = 175 bits (444), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 101/243 (41%), Positives = 138/243 (56%), Gaps = 21/243 (8%)
Query: 755 KNRYANVIAYDHSRVIL---STVDGIPGSDYINANYCDGYR-KHNAYVATQGPLQETLGD 810
KNRY ++ SRV L + D + S YINANY GY K A++ATQGP+ T+ D
Sbjct: 59 KNRYKTILPNPLSRVCLRPKNITDSL--STYINANYIRGYSGKEKAFIATQGPMINTVND 116
Query: 811 FWRMVWELRSVTIVMMTKLEERTRIKCDQYWP-SRGTETYGHITVTLQDVQELASYCIRT 869
FW+MVW+ S IVM+TKL+E+ KC YWP RG YG + V + V E +Y IR
Sbjct: 117 FWQMVWQEDSPVIVMITKLKEKNE-KCVLYWPEKRGI--YGKVEVLVTGVTECDNYTIRN 173
Query: 870 FMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPV 929
++ +G+ ++ +K +T+WPDH P+ P L + V + L S G
Sbjct: 174 LVLKQGSHTQH--VKHYWYTSWPDHKTPDSAQPLLQLMLDVEE-----DRLASEGR---- 222
Query: 930 GPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIH 989
GP++VHCSAG+GRTGCFI +++K + VD V LR R MVQT +QY F+H
Sbjct: 223 GPVVVHCSAGIGRTGCFIATSIGCQQLKEEGVVDALSIVCQLRVDRGGMVQTSEQYEFVH 282
Query: 990 DAL 992
AL
Sbjct: 283 HAL 285
Score = 96.3 bits (238), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 86/178 (48%), Gaps = 28/178 (15%)
Query: 1317 LPCNKHKNRLVHILPVESSRVCLTPVRGIEG-SDYINASFIDGYRLR-SAYIATQGPLAD 1374
+P + KNR ILP SRVCL P + S YINA++I GY + A+IATQGP+ +
Sbjct: 53 IPRHGTKNRYKTILPNPLSRVCLRPKNITDSLSTYINANYIRGYSGKEKAFIATQGPMIN 112
Query: 1375 TTEDFWRMLWEHNSTIVVMLTKLKEM------------GRYVLREFKVTDARDATSRTLR 1422
T DFW+M+W+ +S ++VM+TKLKE G Y E VT + + T+R
Sbjct: 113 TVNDFWQMVWQEDSPVIVMITKLKEKNEKCVLYWPEKRGIYGKVEVLVTGVTECDNYTIR 172
Query: 1423 QFQL--------------IDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCS 1466
L WP+ P S + + V + + GP+ VHCS
Sbjct: 173 NLVLKQGSHTQHVKHYWYTSWPDHKTPDSAQPLLQLMLDVEEDRLASEGRGPVVVHCS 230
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 71/146 (48%), Gaps = 11/146 (7%)
Query: 1504 EKCHQYWPSERSI--RYEWFV--VEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQLID 1559
EKC YWP +R I + E V V Y + VL++ + ++ ++ +
Sbjct: 140 EKCVLYWPEKRGIYGKVEVLVTGVTECDNYTIRNLVLKQ-------GSHTQHVKHYWYTS 192
Query: 1560 WPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYE 1619
WP+ P S + + V + + GP+ VHCSAG+GRTG FI SI ++++ E
Sbjct: 193 WPDHKTPDSAQPLLQLMLDVEEDRLASEGRGPVVVHCSAGIGRTGCFIATSIGCQQLKEE 252
Query: 1620 GVIDLFQTVRILRTQRPAMVQTEHLY 1645
GV+D V LR R MVQT Y
Sbjct: 253 GVVDALSIVCQLRVDRGGMVQTSEQY 278
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 5/68 (7%)
Query: 682 GPITVHCSAGVGRTGVFITLSIVLERMQYEGVIDLFQTVRILRTQRPAMVQTESIEPGQQ 741
GP+ VHCSAG+GRTG FI SI ++++ EGV+D V LR R MVQT +Q
Sbjct: 223 GPVVVHCSAGIGRTGCFIATSIGCQQLKEEGVVDALSIVCQLRVDRGGMVQT-----SEQ 277
Query: 742 FTWDHSSM 749
+ + H ++
Sbjct: 278 YEFVHHAL 285
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 30/62 (48%)
Query: 1729 GPLIVHCSAGVGRTGCFI-------------VIDA-----------------KEQYQFCY 1758
GP++VHCSAG+GRTGCFI V+DA EQY+F +
Sbjct: 223 GPVVVHCSAGIGRTGCFIATSIGCQQLKEEGVVDALSIVCQLRVDRGGMVQTSEQYEFVH 282
Query: 1759 HA 1760
HA
Sbjct: 283 HA 284
>pdb|2A8B|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Tyrosine Phosphatase Receptor, Type R
Length = 283
Score = 174 bits (441), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 106/270 (39%), Positives = 151/270 (55%), Gaps = 24/270 (8%)
Query: 730 MVQTESIEPGQQFTWDHSSMEMNK--AKNRYANVIAYDHSRVIL---STVDGIPGSDYIN 784
++Q+E +E F D +++ + KNRY ++ SRV L + D + S YIN
Sbjct: 20 LLQSEFMEIPMNFV-DPKEIDIPRHGTKNRYKTILPNPLSRVCLRPKNVTDSL--STYIN 76
Query: 785 ANYCDGYR-KHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWP- 842
ANY GY K A++ATQGP+ T+ DFW+MVW+ S IVM+TKL+E+ KC YWP
Sbjct: 77 ANYIRGYSGKEKAFIATQGPMINTVDDFWQMVWQEDSPVIVMITKLKEKNE-KCVLYWPE 135
Query: 843 SRGTETYGHITVTLQDVQELASYCIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAP 902
RG YG + V + V E +Y IR ++ +G+ ++ +K +T+WPDH P+ P
Sbjct: 136 KRGI--YGKVEVLVISVNECDNYTIRNLVLKQGSHTQ--HVKHYWYTSWPDHKTPDSAQP 191
Query: 903 FLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTV 962
L + V + L S G GP++VHCSAG+GRTGCFI +++K + V
Sbjct: 192 LLQLMLDVEE-----DRLASQGR----GPVVVHCSAGIGRTGCFIATSIGCQQLKEEGVV 242
Query: 963 DIYGHVTCLRAQRNYMVQTEDQYMFIHDAL 992
D V LR R MVQT +QY F+H AL
Sbjct: 243 DALSIVCQLRMDRGGMVQTSEQYEFVHHAL 272
Score = 174 bits (441), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 101/244 (41%), Positives = 138/244 (56%), Gaps = 21/244 (8%)
Query: 243 AKNRYANVIAYDHSRVIL---STVDGIPGSDYINANYCDGYR-KHNAYVATQGPLQETLG 298
KNRY ++ SRV L + D + S YINANY GY K A++ATQGP+ T+
Sbjct: 45 TKNRYKTILPNPLSRVCLRPKNVTDSL--STYINANYIRGYSGKEKAFIATQGPMINTVD 102
Query: 299 DFWRMVWELRSVTIVMMTKLEERTRIKCDQYWP-SRGTETYGHITVTLQDVQELASYCIR 357
DFW+MVW+ S IVM+TKL+E+ KC YWP RG YG + V + V E +Y IR
Sbjct: 103 DFWQMVWQEDSPVIVMITKLKEKNE-KCVLYWPEKRGI--YGKVEVLVISVNECDNYTIR 159
Query: 358 TFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLP 417
++ +G+ ++ +K +T+WPDH P+ P L + V + L S G
Sbjct: 160 NLVLKQGSHTQ--HVKHYWYTSWPDHKTPDSAQPLLQLMLDVEE-----DRLASQGR--- 209
Query: 418 VGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFI 477
GP++VHCSAG+GRTGCFI +++K + VD V LR R MVQT +QY F+
Sbjct: 210 -GPVVVHCSAGIGRTGCFIATSIGCQQLKEEGVVDALSIVCQLRMDRGGMVQTSEQYEFV 268
Query: 478 HDAL 481
H AL
Sbjct: 269 HHAL 272
Score = 95.9 bits (237), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 86/178 (48%), Gaps = 28/178 (15%)
Query: 1317 LPCNKHKNRLVHILPVESSRVCLTPVRGIEG-SDYINASFIDGYRLR-SAYIATQGPLAD 1374
+P + KNR ILP SRVCL P + S YINA++I GY + A+IATQGP+ +
Sbjct: 40 IPRHGTKNRYKTILPNPLSRVCLRPKNVTDSLSTYINANYIRGYSGKEKAFIATQGPMIN 99
Query: 1375 TTEDFWRMLWEHNSTIVVMLTKLKEM------------GRYVLREFKVTDARDATSRTLR 1422
T +DFW+M+W+ +S ++VM+TKLKE G Y E V + + T+R
Sbjct: 100 TVDDFWQMVWQEDSPVIVMITKLKEKNEKCVLYWPEKRGIYGKVEVLVISVNECDNYTIR 159
Query: 1423 QFQL--------------IDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCS 1466
L WP+ P S + + V + + GP+ VHCS
Sbjct: 160 NLVLKQGSHTQHVKHYWYTSWPDHKTPDSAQPLLQLMLDVEEDRLASQGRGPVVVHCS 217
Score = 84.7 bits (208), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 69/142 (48%), Gaps = 3/142 (2%)
Query: 1504 EKCHQYWPSERSIRYEWFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQLIDWPEQ 1563
EKC YWP +R I Y V I+ Y +R + + ++ ++ + WP+
Sbjct: 127 EKCVLYWPEKRGI-YGKVEVLVISVNECDNYTIRNLVLKQG--SHTQHVKHYWYTSWPDH 183
Query: 1564 GVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVID 1623
P S + + V + + GP+ VHCSAG+GRTG FI SI ++++ EGV+D
Sbjct: 184 KTPDSAQPLLQLMLDVEEDRLASQGRGPVVVHCSAGIGRTGCFIATSIGCQQLKEEGVVD 243
Query: 1624 LFQTVRILRTQRPAMVQTEHLY 1645
V LR R MVQT Y
Sbjct: 244 ALSIVCQLRMDRGGMVQTSEQY 265
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 5/74 (6%)
Query: 682 GPITVHCSAGVGRTGVFITLSIVLERMQYEGVIDLFQTVRILRTQRPAMVQTESIEPGQQ 741
GP+ VHCSAG+GRTG FI SI ++++ EGV+D V LR R MVQT +Q
Sbjct: 210 GPVVVHCSAGIGRTGCFIATSIGCQQLKEEGVVDALSIVCQLRMDRGGMVQT-----SEQ 264
Query: 742 FTWDHSSMEMNKAK 755
+ + H ++ + +++
Sbjct: 265 YEFVHHALCLYESR 278
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 30/66 (45%)
Query: 1729 GPLIVHCSAGVGRTGCFI-------------VIDA-----------------KEQYQFCY 1758
GP++VHCSAG+GRTGCFI V+DA EQY+F +
Sbjct: 210 GPVVVHCSAGIGRTGCFIATSIGCQQLKEEGVVDALSIVCQLRMDRGGMVQTSEQYEFVH 269
Query: 1759 HAALEY 1764
HA Y
Sbjct: 270 HALCLY 275
>pdb|1GFY|A Chain A, Residue 259 Is A Key Determinant Of Substrate Specificity Of
Protein-Tyrosine Phosphatase 1b And Alpha
Length = 298
Score = 173 bits (439), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 97/274 (35%), Positives = 149/274 (54%), Gaps = 26/274 (9%)
Query: 752 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 811
NK +NRY NV +DHSR+ L D +DYINA+ +Y+ TQGPL T G F
Sbjct: 40 NKNRNRYVNVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTCGHF 95
Query: 812 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 865
W MVWE +S +VM+ ++ E+ +KC QYWP + +T +T+ +D++ Y
Sbjct: 96 WEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIK--TYY 153
Query: 866 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 925
+R + E REI +T WPD GVPE PA FL FL +VR ES +
Sbjct: 154 TVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSL 204
Query: 926 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 982
+ GP++VHCSAG+GR+G F + D ++++ K +VDI + +R R ++QT
Sbjct: 205 SPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLDMRKFRCQLIQTA 264
Query: 983 DQYMFIHDALLEAV--LCGNTEIPASSQMITRKD 1014
DQ F + A++E + G++ + + ++ +D
Sbjct: 265 DQLRFSYLAVIEGAKFIMGDSSVQDQWKELSHED 298
Score = 172 bits (437), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 95/254 (37%), Positives = 139/254 (54%), Gaps = 24/254 (9%)
Query: 241 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 300
NK +NRY NV +DHSR+ L D +DYINA+ +Y+ TQGPL T G F
Sbjct: 40 NKNRNRYVNVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTCGHF 95
Query: 301 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 354
W MVWE +S +VM+ ++ E+ +KC QYWP + +T +T+ +D++ Y
Sbjct: 96 WEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIK--TYY 153
Query: 355 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 414
+R + E REI +T WPD GVPE PA FL FL +VR ES +
Sbjct: 154 TVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSL 204
Query: 415 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 471
+ GP++VHCSAG+GR+G F + D ++++ K +VDI + +R R ++QT
Sbjct: 205 SPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLDMRKFRCQLIQTA 264
Query: 472 DQYMFIHDALLEAV 485
DQ F + A++E
Sbjct: 265 DQLRFSYLAVIEGA 278
Score = 103 bits (257), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 95/199 (47%), Gaps = 40/199 (20%)
Query: 1304 NIRAEPSRFIS--ASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFIDGYRL 1361
+IR E S F A LP NK++NR V++ P + SR+ L E +DYINAS I
Sbjct: 22 DIRHEASDFPCRVAKLPKNKNRNRYVNVSPFDHSRIKLHQ----EDNDYINASLIKMEEA 77
Query: 1362 RSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------------- 1402
+ +YI TQGPL +T FW M+WE S VVML ++ E G
Sbjct: 78 QRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFED 137
Query: 1403 ---------------YVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQ 1447
Y +R+ ++ + +R + F WP+ GVP+S F++F+ +
Sbjct: 138 TNLKLTLISEDIKTYYTVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFK 197
Query: 1448 VHKTKEQFGQDGPITVHCS 1466
V ++ + GP+ VHCS
Sbjct: 198 VRESGSLSPEHGPVVVHCS 216
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 78/148 (52%), Gaps = 15/148 (10%)
Query: 1505 KCHQYWP--SERSIRYE------WFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQ 1556
KC QYWP E+ + +E + E I Y Y +R+ ++ + +R + F
Sbjct: 120 KCAQYWPQKEEKEMIFEDTNLKLTLISEDIKTY----YTVRQLELENLTTQETREILHFH 175
Query: 1557 LIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVL 1613
WP+ GVP+S F++F+ +V ++ + GP+ VHCSAG+GR+G F T +++
Sbjct: 176 YTTWPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLM 235
Query: 1614 ERMQYEGVIDLFQTVRILRTQRPAMVQT 1641
++ + +D+ + + +R R ++QT
Sbjct: 236 DKRKDPSSVDIKKVLLDMRKFRCQLIQT 263
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 114/262 (43%), Gaps = 45/262 (17%)
Query: 516 MELEFKKLS----------NIRAEPSRFIS--ASLPCNKHKNRLVHILPVESSRVCLTPV 563
ME EF+++ +IR E S F A LP NK++NR V++ P + SR+ L
Sbjct: 3 MEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYVNVSPFDHSRIKLHQE 62
Query: 564 RGDGFID--FIGQVHKTKEQFGQDGPITVHCSRLAQHIENLKANDNLKFSQEYE--SIEP 619
D +I+ I + GP+ C + + K+ + ++ E S++
Sbjct: 63 DND-YINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKC 121
Query: 620 GQQFTWDHSSMEMNKAKNRYANVIAYD------------------HSRVIL-----STVD 656
Q + + + N +I+ D +R IL + D
Sbjct: 122 AQYWPQKEEKEMIFEDTNLKLTLISEDIKTYYTVRQLELENLTTQETREILHFHYTTWPD 181
Query: 657 -GIPGRDG-FIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVLERMQYE 711
G+P F++F+ +V ++ + GP+ VHCSAG+GR+G F T +++++ +
Sbjct: 182 FGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDP 241
Query: 712 GVIDLFQTVRILRTQRPAMVQT 733
+D+ + + +R R ++QT
Sbjct: 242 SSVDIKKVLLDMRKFRCQLIQT 263
Score = 40.0 bits (92), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 1711 LLFILKSSLESSGVNLPVGPLIVHCSAGVGRTGCFIVID 1749
L F+ K ES ++ GP++VHCSAG+GR+G F + D
Sbjct: 192 LNFLFKVR-ESGSLSPEHGPVVVHCSAGIGRSGTFCLAD 229
>pdb|1C86|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b (R47v,
D48n) Complexed With 2-(Oxalyl-Amino-4,7-Dihydro-5h-
Thieno[2,3-C]pyran-3-Carboxylic Acid
Length = 298
Score = 173 bits (439), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 97/274 (35%), Positives = 149/274 (54%), Gaps = 26/274 (9%)
Query: 752 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 811
NK +NRY NV +DHSR+ L D +DYINA+ +Y+ TQGPL T G F
Sbjct: 40 NKNRNRYVNVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTCGHF 95
Query: 812 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 865
W MVWE +S +VM+ ++ E+ +KC QYWP + +T +T+ +D++ Y
Sbjct: 96 WEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIK--TYY 153
Query: 866 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 925
+R + E REI +T WPD GVPE PA FL FL +VR ES +
Sbjct: 154 TVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSL 204
Query: 926 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 982
+ GP++VHCSAG+GR+G F + D ++++ K +VDI + +R R ++QT
Sbjct: 205 SPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLDMRKFRMGLIQTA 264
Query: 983 DQYMFIHDALLEAV--LCGNTEIPASSQMITRKD 1014
DQ F + A++E + G++ + + ++ +D
Sbjct: 265 DQLRFSYLAVIEGAKFIMGDSSVQDQWKELSHED 298
Score = 172 bits (437), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 95/254 (37%), Positives = 139/254 (54%), Gaps = 24/254 (9%)
Query: 241 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 300
NK +NRY NV +DHSR+ L D +DYINA+ +Y+ TQGPL T G F
Sbjct: 40 NKNRNRYVNVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTCGHF 95
Query: 301 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 354
W MVWE +S +VM+ ++ E+ +KC QYWP + +T +T+ +D++ Y
Sbjct: 96 WEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIK--TYY 153
Query: 355 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 414
+R + E REI +T WPD GVPE PA FL FL +VR ES +
Sbjct: 154 TVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSL 204
Query: 415 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 471
+ GP++VHCSAG+GR+G F + D ++++ K +VDI + +R R ++QT
Sbjct: 205 SPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLDMRKFRMGLIQTA 264
Query: 472 DQYMFIHDALLEAV 485
DQ F + A++E
Sbjct: 265 DQLRFSYLAVIEGA 278
Score = 103 bits (257), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 95/199 (47%), Gaps = 40/199 (20%)
Query: 1304 NIRAEPSRFIS--ASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFIDGYRL 1361
+IR E S F A LP NK++NR V++ P + SR+ L E +DYINAS I
Sbjct: 22 DIRHEASDFPCRVAKLPKNKNRNRYVNVSPFDHSRIKLHQ----EDNDYINASLIKMEEA 77
Query: 1362 RSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------------- 1402
+ +YI TQGPL +T FW M+WE S VVML ++ E G
Sbjct: 78 QRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFED 137
Query: 1403 ---------------YVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQ 1447
Y +R+ ++ + +R + F WP+ GVP+S F++F+ +
Sbjct: 138 TNLKLTLISEDIKTYYTVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFK 197
Query: 1448 VHKTKEQFGQDGPITVHCS 1466
V ++ + GP+ VHCS
Sbjct: 198 VRESGSLSPEHGPVVVHCS 216
Score = 77.0 bits (188), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 78/148 (52%), Gaps = 15/148 (10%)
Query: 1505 KCHQYWP--SERSIRYE------WFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQ 1556
KC QYWP E+ + +E + E I Y Y +R+ ++ + +R + F
Sbjct: 120 KCAQYWPQKEEKEMIFEDTNLKLTLISEDIKTY----YTVRQLELENLTTQETREILHFH 175
Query: 1557 LIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVL 1613
WP+ GVP+S F++F+ +V ++ + GP+ VHCSAG+GR+G F T +++
Sbjct: 176 YTTWPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLM 235
Query: 1614 ERMQYEGVIDLFQTVRILRTQRPAMVQT 1641
++ + +D+ + + +R R ++QT
Sbjct: 236 DKRKDPSSVDIKKVLLDMRKFRMGLIQT 263
Score = 53.5 bits (127), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 114/262 (43%), Gaps = 45/262 (17%)
Query: 516 MELEFKKLS----------NIRAEPSRFIS--ASLPCNKHKNRLVHILPVESSRVCLTPV 563
ME EF+++ +IR E S F A LP NK++NR V++ P + SR+ L
Sbjct: 3 MEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYVNVSPFDHSRIKLHQE 62
Query: 564 RGDGFID--FIGQVHKTKEQFGQDGPITVHCSRLAQHIENLKANDNLKFSQEYE--SIEP 619
D +I+ I + GP+ C + + K+ + ++ E S++
Sbjct: 63 DND-YINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKC 121
Query: 620 GQQFTWDHSSMEMNKAKNRYANVIAYD------------------HSRVIL-----STVD 656
Q + + + N +I+ D +R IL + D
Sbjct: 122 AQYWPQKEEKEMIFEDTNLKLTLISEDIKTYYTVRQLELENLTTQETREILHFHYTTWPD 181
Query: 657 -GIPGRDG-FIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVLERMQYE 711
G+P F++F+ +V ++ + GP+ VHCSAG+GR+G F T +++++ +
Sbjct: 182 FGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDP 241
Query: 712 GVIDLFQTVRILRTQRPAMVQT 733
+D+ + + +R R ++QT
Sbjct: 242 SSVDIKKVLLDMRKFRMGLIQT 263
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 1711 LLFILKSSLESSGVNLPVGPLIVHCSAGVGRTGCFIVID 1749
L F+ K ES ++ GP++VHCSAG+GR+G F + D
Sbjct: 192 LNFLFKVR-ESGSLSPEHGPVVVHCSAGIGRSGTFCLAD 229
>pdb|1NWL|A Chain A, Crystal Structure Of The Ptp1b Complexed With Sp7343-Sp7964,
A Ptyr Mimetic
pdb|1NWE|A Chain A, Ptp1b R47c Modified At C47 With N-[4-(2-{2-[3-(2-Bromo-
Acetylamino)-Propionylamino]-3-Hydroxy-Propionylamino}-
Ethyl)-Phenyl]-Oxalamic Acid
Length = 298
Score = 173 bits (439), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 151/274 (55%), Gaps = 26/274 (9%)
Query: 752 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 811
NK +NRY +V +DHSR+ L D +DYINA+ +Y+ TQGPL T+G F
Sbjct: 40 NKNRNRYCDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTVGHF 95
Query: 812 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 865
W MVWE +S +VM+ ++ E+ +KC QYWP + +T +T+ +D++ + Y
Sbjct: 96 WEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIK--SYY 153
Query: 866 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 925
+R + E REI +T WPD GVPE PA FL FL +VR ES +
Sbjct: 154 TVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSL 204
Query: 926 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 982
+ GP++VHCSAG+GR+G F + D ++++ K +VDI + +R R ++QT
Sbjct: 205 SPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTA 264
Query: 983 DQYMFIHDALLEAV--LCGNTEIPASSQMITRKD 1014
DQ F + A++E + G++ + + ++ +D
Sbjct: 265 DQLRFSYLAVIEGAKFIMGDSSVQDQWKELSHED 298
Score = 172 bits (436), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 94/254 (37%), Positives = 141/254 (55%), Gaps = 24/254 (9%)
Query: 241 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 300
NK +NRY +V +DHSR+ L D +DYINA+ +Y+ TQGPL T+G F
Sbjct: 40 NKNRNRYCDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTVGHF 95
Query: 301 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 354
W MVWE +S +VM+ ++ E+ +KC QYWP + +T +T+ +D++ + Y
Sbjct: 96 WEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIK--SYY 153
Query: 355 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 414
+R + E REI +T WPD GVPE PA FL FL +VR ES +
Sbjct: 154 TVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSL 204
Query: 415 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 471
+ GP++VHCSAG+GR+G F + D ++++ K +VDI + +R R ++QT
Sbjct: 205 SPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTA 264
Query: 472 DQYMFIHDALLEAV 485
DQ F + A++E
Sbjct: 265 DQLRFSYLAVIEGA 278
Score = 103 bits (257), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 94/199 (47%), Gaps = 40/199 (20%)
Query: 1304 NIRAEPSRFIS--ASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFIDGYRL 1361
+IR E S F S A LP NK++NR + P + SR+ L E +DYINAS I
Sbjct: 22 DIRHEASDFPSRVAKLPKNKNRNRYCDVSPFDHSRIKLHQ----EDNDYINASLIKMEEA 77
Query: 1362 RSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------------- 1402
+ +YI TQGPL +T FW M+WE S VVML ++ E G
Sbjct: 78 QRSYILTQGPLPNTVGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFED 137
Query: 1403 ---------------YVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQ 1447
Y +R+ ++ + +R + F WP+ GVP+S F++F+ +
Sbjct: 138 TNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFK 197
Query: 1448 VHKTKEQFGQDGPITVHCS 1466
V ++ + GP+ VHCS
Sbjct: 198 VRESGSLSPEHGPVVVHCS 216
Score = 77.0 bits (188), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 78/148 (52%), Gaps = 15/148 (10%)
Query: 1505 KCHQYWP--SERSIRYE------WFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQ 1556
KC QYWP E+ + +E + E I Y Y +R+ ++ + +R + F
Sbjct: 120 KCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSY----YTVRQLELENLTTQETREILHFH 175
Query: 1557 LIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVL 1613
WP+ GVP+S F++F+ +V ++ + GP+ VHCSAG+GR+G F T +++
Sbjct: 176 YTTWPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLM 235
Query: 1614 ERMQYEGVIDLFQTVRILRTQRPAMVQT 1641
++ + +D+ + + +R R ++QT
Sbjct: 236 DKRKDPSSVDIKKVLLEMRKFRMGLIQT 263
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 663 GFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVLERMQYEGVIDLFQT 719
F++F+ +V ++ + GP+ VHCSAG+GR+G F T +++++ + +D+ +
Sbjct: 190 SFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKV 249
Query: 720 VRILRTQRPAMVQT 733
+ +R R ++QT
Sbjct: 250 LLEMRKFRMGLIQT 263
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 1711 LLFILKSSLESSGVNLPVGPLIVHCSAGVGRTGCFIVID 1749
L F+ K ES ++ GP++VHCSAG+GR+G F + D
Sbjct: 192 LNFLFKVR-ESGSLSPEHGPVVVHCSAGIGRSGTFCLAD 229
>pdb|2BIJ|A Chain A, Crystal Structure Of The Human Protein Tyrosine
Phosphatase Ptpn5 (step, Striatum Enriched Enriched
Phosphatase)
Length = 305
Score = 173 bits (438), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 94/240 (39%), Positives = 131/240 (54%), Gaps = 14/240 (5%)
Query: 244 KNRYANVIAYDHSRVILSTVD-GIPGSDYINANYCDGYR-KHNAYVATQGPLQETLGDFW 301
KNRY ++ HSRV L++ D P S YINANY GY + Y+ATQGP+ T+ DFW
Sbjct: 67 KNRYKTILPNPHSRVCLTSPDPDDPLSSYINANYIRGYGGEEKVYIATQGPIVSTVADFW 126
Query: 302 RMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYCIRTFMI 361
RMVW+ + IVM+T +EE KC +YWP Y + +T+Q V Y +R +
Sbjct: 127 RMVWQEHTPIIVMITNIEEMNE-KCTEYWPEEQV-AYDGVEITVQKVIHTEDYRLRLISL 184
Query: 362 NKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPL 421
G +E R +K FT+WPD P+ P L +R V + + G + P+
Sbjct: 185 KSG--TEERGLKHYWFTSWPDQKTPDRAPPLLHLVREVE------EAAQQEGPH--CAPI 234
Query: 422 IVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDAL 481
IVHCSAG+GRTGCFI ++++ + VDI LR R M+QT +QY F+H +
Sbjct: 235 IVHCSAGIGRTGCFIATSICCQQLRQEGVVDILKTTCQLRQDRGGMIQTCEQYQFVHHVM 294
Score = 173 bits (438), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 94/240 (39%), Positives = 131/240 (54%), Gaps = 14/240 (5%)
Query: 755 KNRYANVIAYDHSRVILSTVD-GIPGSDYINANYCDGYR-KHNAYVATQGPLQETLGDFW 812
KNRY ++ HSRV L++ D P S YINANY GY + Y+ATQGP+ T+ DFW
Sbjct: 67 KNRYKTILPNPHSRVCLTSPDPDDPLSSYINANYIRGYGGEEKVYIATQGPIVSTVADFW 126
Query: 813 RMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYCIRTFMI 872
RMVW+ + IVM+T +EE KC +YWP Y + +T+Q V Y +R +
Sbjct: 127 RMVWQEHTPIIVMITNIEEMNE-KCTEYWPEEQV-AYDGVEITVQKVIHTEDYRLRLISL 184
Query: 873 NKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPL 932
G +E R +K FT+WPD P+ P L +R V + + G + P+
Sbjct: 185 KSG--TEERGLKHYWFTSWPDQKTPDRAPPLLHLVREVE------EAAQQEGPH--CAPI 234
Query: 933 IVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDAL 992
IVHCSAG+GRTGCFI ++++ + VDI LR R M+QT +QY F+H +
Sbjct: 235 IVHCSAGIGRTGCFIATSICCQQLRQEGVVDILKTTCQLRQDRGGMIQTCEQYQFVHHVM 294
Score = 94.0 bits (232), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 92/206 (44%), Gaps = 32/206 (15%)
Query: 1290 LTPVRGKTEFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLT-PVRGIEGS 1348
L P + EF ++ +P + +P KNR ILP SRVCLT P S
Sbjct: 37 LDPFLLQAEFFEIPMNFVDPKEY---DIPGLVRKNRYKTILPNPHSRVCLTSPDPDDPLS 93
Query: 1349 DYINASFIDGYR-LRSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMG----RY 1403
YINA++I GY YIATQGP+ T DFWRM+W+ ++ I+VM+T ++EM Y
Sbjct: 94 SYINANYIRGYGGEEKVYIATQGPIVSTVADFWRMVWQEHTPIIVMITNIEEMNEKCTEY 153
Query: 1404 VLREFKVTDARDAT----------------------SRTLRQFQLIDWPEQGVPKSGDGF 1441
E D + T R L+ + WP+Q P
Sbjct: 154 WPEEQVAYDGVEITVQKVIHTEDYRLRLISLKSGTEERGLKHYWFTSWPDQKTPDRAPPL 213
Query: 1442 IDFIGQVHKTKEQFG-QDGPITVHCS 1466
+ + +V + +Q G PI VHCS
Sbjct: 214 LHLVREVEEAAQQEGPHCAPIIVHCS 239
Score = 88.6 bits (218), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 73/143 (51%), Gaps = 4/143 (2%)
Query: 1504 EKCHQYWPSERSIRYEWFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQLIDWPEQ 1563
EKC +YWP E+ + Y+ + + Y LR + + R L+ + WP+Q
Sbjct: 148 EKCTEYWPEEQ-VAYDGVEITVQKVIHTEDYRLRLISLKSGTE--ERGLKHYWFTSWPDQ 204
Query: 1564 GVPKSGDGFIDFIGQVHKTKEQFG-QDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVI 1622
P + + +V + +Q G PI VHCSAG+GRTG FI SI ++++ EGV+
Sbjct: 205 KTPDRAPPLLHLVREVEEAAQQEGPHCAPIIVHCSAGIGRTGCFIATSICCQQLRQEGVV 264
Query: 1623 DLFQTVRILRTQRPAMVQTEHLY 1645
D+ +T LR R M+QT Y
Sbjct: 265 DILKTTCQLRQDRGGMIQTCEQY 287
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 113/273 (41%), Gaps = 47/273 (17%)
Query: 516 MELEFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLT-PVRGDGFIDFI-- 572
++ EF ++ +P + +P KNR ILP SRVCLT P D +I
Sbjct: 42 LQAEFFEIPMNFVDPKEY---DIPGLVRKNRYKTILPNPHSRVCLTSPDPDDPLSSYINA 98
Query: 573 ----GQVHKTKEQFGQDGPITVHCSRL-----AQHIENLKANDNLK-FSQEYESIEPGQQ 622
G + K GPI + +H + N++ +++ P +Q
Sbjct: 99 NYIRGYGGEEKVYIATQGPIVSTVADFWRMVWQEHTPIIVMITNIEEMNEKCTEYWPEEQ 158
Query: 623 FTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVDGIPGR----------------DGFID 666
+D + + K + D+ ++S G R D
Sbjct: 159 VAYDGVEITVQKV------IHTEDYRLRLISLKSGTEERGLKHYWFTSWPDQKTPDRAPP 212
Query: 667 FIGQVHKTKEQFGQDGP----ITVHCSAGVGRTGVFITLSIVLERMQYEGVIDLFQTVRI 722
+ V + +E Q+GP I VHCSAG+GRTG FI SI ++++ EGV+D+ +T
Sbjct: 213 LLHLVREVEEAAQQEGPHCAPIIVHCSAGIGRTGCFIATSICCQQLRQEGVVDILKTTCQ 272
Query: 723 LRTQRPAMVQTESIEPGQQFTWDHSSMEMNKAK 755
LR R M+QT +Q+ + H M + + +
Sbjct: 273 LRQDRGGMIQT-----CEQYQFVHHVMSLYEKQ 300
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 37/91 (40%), Gaps = 31/91 (34%)
Query: 1711 LLFILKSSLESSGVNLP-VGPLIVHCSAGVGRTGCFI----------------------- 1746
LL +++ E++ P P+IVHCSAG+GRTGCFI
Sbjct: 213 LLHLVREVEEAAQQEGPHCAPIIVHCSAGIGRTGCFIATSICCQQLRQEGVVDILKTTCQ 272
Query: 1747 -------VIDAKEQYQFCYHAALEYLGSFDH 1770
+I EQYQF +H Y H
Sbjct: 273 LRQDRGGMIQTCEQYQFVHHVMSLYEKQLSH 303
>pdb|2SHP|A Chain A, Tyrosine Phosphatase Shp-2
pdb|2SHP|B Chain B, Tyrosine Phosphatase Shp-2
Length = 525
Score = 172 bits (436), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 114/301 (37%), Positives = 168/301 (55%), Gaps = 34/301 (11%)
Query: 200 ISRLAQHIENLKANDNLKFSQEYESIEPGQ---QFTWDHSSMEMNKAKNRYANVIAYDHS 256
+S+LA+ + +K F +E+E+++ + ++ + NK KNRY N++ +DH+
Sbjct: 233 LSKLAETTDKVKQG----FWEEFETLQQQECKLLYSRKEGQRQENKNKNRYKNILPFDHT 288
Query: 257 RVILSTVD-GIPGSDYINANY--------CDGYRKHNAYVATQGPLQETLGDFWRMVWEL 307
RV+L D P SDYINAN C+ + +Y+ATQG LQ T+ DFWRMV++
Sbjct: 289 RVVLHDGDPNEPVSDYINANIIMPEFETKCNNSKPKKSYIATQGCLQNTVNDFWRMVFQE 348
Query: 308 RSVTIVMMTKLEERTRIKCDQYWPSR-GTETYGHITVTLQDVQELAS--YCIRTFMINK- 363
S IVM TK ER + KC +YWP + YG + V ++V+E A+ Y +R ++K
Sbjct: 349 NSRVIVMTTKEVERGKSKCVKYWPDEYALKEYGVMRV--RNVKESAAHDYTLRELKLSKV 406
Query: 364 GADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIV 423
G + R + Q F WPDHGVP P L FL V + GP++V
Sbjct: 407 GQGNTERTVWQYHFRTWPDHGVPSDPGGVLDFLEEVHHKQESI---------MDAGPVVV 457
Query: 424 HCSAGVGRTGCFIVIDAMIERIKH---DKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDA 480
HCSAG+GRTG FIVID +I+ I+ D +D+ + +R+QR+ MVQTE QY I+ A
Sbjct: 458 HCSAGIGRTGTFIVIDILIDIIREKGVDCDIDVPKTIQMVRSQRSGMVQTEAQYRSIYMA 517
Query: 481 L 481
+
Sbjct: 518 V 518
Score = 168 bits (425), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 107/257 (41%), Positives = 147/257 (57%), Gaps = 27/257 (10%)
Query: 752 NKAKNRYANVIAYDHSRVILSTVD-GIPGSDYINANY--------CDGYRKHNAYVATQG 802
NK KNRY N++ +DH+RV+L D P SDYINAN C+ + +Y+ATQG
Sbjct: 273 NKNKNRYKNILPFDHTRVVLHDGDPNEPVSDYINANIIMPEFETKCNNSKPKKSYIATQG 332
Query: 803 PLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSR-GTETYGHITVTLQDVQE 861
LQ T+ DFWRMV++ S IVM TK ER + KC +YWP + YG + V ++V+E
Sbjct: 333 CLQNTVNDFWRMVFQENSRVIVMTTKEVERGKSKCVKYWPDEYALKEYGVMRV--RNVKE 390
Query: 862 LAS--YCIRTFMINK-GADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTN 918
A+ Y +R ++K G + R + Q F WPDHGVP P L FL V
Sbjct: 391 SAAHDYTLRELKLSKVGQGNTERTVWQYHFRTWPDHGVPSDPGGVLDFLEEVHHKQESI- 449
Query: 919 SLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKH---DKTVDIYGHVTCLRAQR 975
+ GP++VHCSAG+GRTG FIVID +I+ I+ D +D+ + +R+QR
Sbjct: 450 --------MDAGPVVVHCSAGIGRTGTFIVIDILIDIIREKGVDCDIDVPKTIQMVRSQR 501
Query: 976 NYMVQTEDQYMFIHDAL 992
+ MVQTE QY I+ A+
Sbjct: 502 SGMVQTEAQYRSIYMAV 518
Score = 110 bits (274), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 94/160 (58%), Gaps = 5/160 (3%)
Query: 1493 VLIAYLVLFSQEKCHQYWPSERSIR-YEWFVVEPIAEYNMPQYVLREFKVTD-ARDATSR 1550
V+ V + KC +YWP E +++ Y V + E Y LRE K++ + T R
Sbjct: 354 VMTTKEVERGKSKCVKYWPDEYALKEYGVMRVRNVKESAAHDYTLRELKLSKVGQGNTER 413
Query: 1551 TLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLS 1610
T+ Q+ WP+ GVP G +DF+ +VH +E GP+ VHCSAG+GRTG FI +
Sbjct: 414 TVWQYHFRTWPDHGVPSDPGGVLDFLEEVHHKQESIMDAGPVVVHCSAGIGRTGTFIVID 473
Query: 1611 IVLERMQYEGV---IDLFQTVRILRTQRPAMVQTEHLYTS 1647
I+++ ++ +GV ID+ +T++++R+QR MVQTE Y S
Sbjct: 474 ILIDIIREKGVDCDIDVPKTIQMVRSQRSGMVQTEAQYRS 513
Score = 107 bits (268), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 94/193 (48%), Gaps = 51/193 (26%)
Query: 1320 NKHKNRLVHILPVESSRVCL------TPVRGIEGSDYINASFI--------DGYRLRSAY 1365
NK+KNR +ILP + +RV L PV SDYINA+ I + + + +Y
Sbjct: 273 NKNKNRYKNILPFDHTRVVLHDGDPNEPV-----SDYINANIIMPEFETKCNNSKPKKSY 327
Query: 1366 IATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR----------YVLREFKVTDARD 1415
IATQG L +T DFWRM+++ NS ++VM TK E G+ Y L+E+ V R+
Sbjct: 328 IATQGCLQNTVNDFWRMVFQENSRVIVMTTKEVERGKSKCVKYWPDEYALKEYGVMRVRN 387
Query: 1416 A----------------------TSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKE 1453
T RT+ Q+ WP+ GVP G +DF+ +VH +E
Sbjct: 388 VKESAAHDYTLRELKLSKVGQGNTERTVWQYHFRTWPDHGVPSDPGGVLDFLEEVHHKQE 447
Query: 1454 QFGQDGPITVHCS 1466
GP+ VHCS
Sbjct: 448 SIMDAGPVVVHCS 460
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 58/83 (69%), Gaps = 4/83 (4%)
Query: 657 GIPGR-DGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGV-- 713
G+P G +DF+ +VH +E GP+ VHCSAG+GRTG FI + I+++ ++ +GV
Sbjct: 427 GVPSDPGGVLDFLEEVHHKQESIMDAGPVVVHCSAGIGRTGTFIVIDILIDIIREKGVDC 486
Query: 714 -IDLFQTVRILRTQRPAMVQTES 735
ID+ +T++++R+QR MVQTE+
Sbjct: 487 DIDVPKTIQMVRSQRSGMVQTEA 509
Score = 38.5 bits (88), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 9/70 (12%)
Query: 593 SRLAQHIENLKANDNLKFSQEYESIEPGQ---QFTWDHSSMEMNKAKNRYANVIAYDHSR 649
S+LA+ + +K F +E+E+++ + ++ + NK KNRY N++ +DH+R
Sbjct: 234 SKLAETTDKVKQG----FWEEFETLQQQECKLLYSRKEGQRQENKNKNRYKNILPFDHTR 289
Query: 650 VILSTVDGIP 659
V+L DG P
Sbjct: 290 VVLH--DGDP 297
Score = 38.5 bits (88), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 17/20 (85%)
Query: 1726 LPVGPLIVHCSAGVGRTGCF 1745
+ GP++VHCSAG+GRTG F
Sbjct: 450 MDAGPVVVHCSAGIGRTGTF 469
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 567 GFIDFIGQVHKTKEQFGQDGPITVHCS 593
G +DF+ +VH +E GP+ VHCS
Sbjct: 434 GVLDFLEEVHHKQESIMDAGPVVVHCS 460
>pdb|3B7O|A Chain A, Crystal Structure Of The Human Tyrosine Phosphatase Shp2
(Ptpn11) With An Accessible Active Site
Length = 316
Score = 172 bits (436), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 111/283 (39%), Positives = 160/283 (56%), Gaps = 30/283 (10%)
Query: 218 FSQEYESIEPGQ---QFTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVD-GIPGSDYIN 273
F +E+E+++ + ++ + NK KNRY N++ +DH+RV+L D P SDYIN
Sbjct: 34 FWEEFETLQQQECKLLYSRKEGQRQENKNKNRYKNILPFDHTRVVLHDGDPNEPVSDYIN 93
Query: 274 ANY--------CDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIK 325
AN C+ + +Y+ATQG LQ T+ DFWRMV++ S IVM TK ER + K
Sbjct: 94 ANIIMPEFETKCNNSKPKKSYIATQGCLQNTVNDFWRMVFQENSRVIVMTTKEVERGKSK 153
Query: 326 CDQYWPSR-GTETYGHITVTLQDVQELAS--YCIRTFMINK-GADSERREIKQLQFTAWP 381
C +YWP + YG + V ++V+E A+ Y +R ++K G + R + Q F WP
Sbjct: 154 CVKYWPDEYALKEYGVMRV--RNVKESAAHDYTLRELKLSKVGQGNTERTVWQYHFRTWP 211
Query: 382 DHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAM 441
DHGVP P L FL V + GP++VHCSAG+GRTG FIVID +
Sbjct: 212 DHGVPSDPGGVLDFLEEVHHKQESI---------MDAGPVVVHCSAGIGRTGTFIVIDIL 262
Query: 442 IERIKH---DKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDAL 481
I+ I+ D +D+ + +R+QR+ MVQTE QY FI+ A+
Sbjct: 263 IDIIREKGVDCDIDVPKTIQMVRSQRSGMVQTEAQYRFIYMAV 305
Score = 171 bits (432), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 108/257 (42%), Positives = 148/257 (57%), Gaps = 27/257 (10%)
Query: 752 NKAKNRYANVIAYDHSRVILSTVD-GIPGSDYINANY--------CDGYRKHNAYVATQG 802
NK KNRY N++ +DH+RV+L D P SDYINAN C+ + +Y+ATQG
Sbjct: 60 NKNKNRYKNILPFDHTRVVLHDGDPNEPVSDYINANIIMPEFETKCNNSKPKKSYIATQG 119
Query: 803 PLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSR-GTETYGHITVTLQDVQE 861
LQ T+ DFWRMV++ S IVM TK ER + KC +YWP + YG + V ++V+E
Sbjct: 120 CLQNTVNDFWRMVFQENSRVIVMTTKEVERGKSKCVKYWPDEYALKEYGVMRV--RNVKE 177
Query: 862 LAS--YCIRTFMINK-GADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTN 918
A+ Y +R ++K G + R + Q F WPDHGVP P L FL V
Sbjct: 178 SAAHDYTLRELKLSKVGQGNTERTVWQYHFRTWPDHGVPSDPGGVLDFLEEVHHKQESI- 236
Query: 919 SLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKH---DKTVDIYGHVTCLRAQR 975
+ GP++VHCSAG+GRTG FIVID +I+ I+ D +D+ + +R+QR
Sbjct: 237 --------MDAGPVVVHCSAGIGRTGTFIVIDILIDIIREKGVDCDIDVPKTIQMVRSQR 288
Query: 976 NYMVQTEDQYMFIHDAL 992
+ MVQTE QY FI+ A+
Sbjct: 289 SGMVQTEAQYRFIYMAV 305
Score = 107 bits (268), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 93/158 (58%), Gaps = 5/158 (3%)
Query: 1493 VLIAYLVLFSQEKCHQYWPSERSIR-YEWFVVEPIAEYNMPQYVLREFKVTD-ARDATSR 1550
V+ V + KC +YWP E +++ Y V + E Y LRE K++ + T R
Sbjct: 141 VMTTKEVERGKSKCVKYWPDEYALKEYGVMRVRNVKESAAHDYTLRELKLSKVGQGNTER 200
Query: 1551 TLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLS 1610
T+ Q+ WP+ GVP G +DF+ +VH +E GP+ VHCSAG+GRTG FI +
Sbjct: 201 TVWQYHFRTWPDHGVPSDPGGVLDFLEEVHHKQESIMDAGPVVVHCSAGIGRTGTFIVID 260
Query: 1611 IVLERMQYEGV---IDLFQTVRILRTQRPAMVQTEHLY 1645
I+++ ++ +GV ID+ +T++++R+QR MVQTE Y
Sbjct: 261 ILIDIIREKGVDCDIDVPKTIQMVRSQRSGMVQTEAQY 298
Score = 107 bits (268), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 94/193 (48%), Gaps = 51/193 (26%)
Query: 1320 NKHKNRLVHILPVESSRVCL------TPVRGIEGSDYINASFI--------DGYRLRSAY 1365
NK+KNR +ILP + +RV L PV SDYINA+ I + + + +Y
Sbjct: 60 NKNKNRYKNILPFDHTRVVLHDGDPNEPV-----SDYINANIIMPEFETKCNNSKPKKSY 114
Query: 1366 IATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR----------YVLREFKVTDARD 1415
IATQG L +T DFWRM+++ NS ++VM TK E G+ Y L+E+ V R+
Sbjct: 115 IATQGCLQNTVNDFWRMVFQENSRVIVMTTKEVERGKSKCVKYWPDEYALKEYGVMRVRN 174
Query: 1416 A----------------------TSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKE 1453
T RT+ Q+ WP+ GVP G +DF+ +VH +E
Sbjct: 175 VKESAAHDYTLRELKLSKVGQGNTERTVWQYHFRTWPDHGVPSDPGGVLDFLEEVHHKQE 234
Query: 1454 QFGQDGPITVHCS 1466
GP+ VHCS
Sbjct: 235 SIMDAGPVVVHCS 247
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 58/83 (69%), Gaps = 4/83 (4%)
Query: 657 GIPGR-DGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGV-- 713
G+P G +DF+ +VH +E GP+ VHCSAG+GRTG FI + I+++ ++ +GV
Sbjct: 214 GVPSDPGGVLDFLEEVHHKQESIMDAGPVVVHCSAGIGRTGTFIVIDILIDIIREKGVDC 273
Query: 714 -IDLFQTVRILRTQRPAMVQTES 735
ID+ +T++++R+QR MVQTE+
Sbjct: 274 DIDVPKTIQMVRSQRSGMVQTEA 296
Score = 38.5 bits (88), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 17/20 (85%)
Query: 1726 LPVGPLIVHCSAGVGRTGCF 1745
+ GP++VHCSAG+GRTG F
Sbjct: 237 MDAGPVVVHCSAGIGRTGTF 256
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 5/53 (9%)
Query: 610 FSQEYESIEPGQ---QFTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVDGIP 659
F +E+E+++ + ++ + NK KNRY N++ +DH+RV+L DG P
Sbjct: 34 FWEEFETLQQQECKLLYSRKEGQRQENKNKNRYKNILPFDHTRVVLH--DGDP 84
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 567 GFIDFIGQVHKTKEQFGQDGPITVHCS 593
G +DF+ +VH +E GP+ VHCS
Sbjct: 221 GVLDFLEEVHHKQESIMDAGPVVVHCS 247
>pdb|4I8N|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b In
Complex With An Inhibitor
[(4-{(2s)-2-(1,3-Benzoxazol-2-Yl)-2-[(4-Fluorophenyl)
Sulfamoyl]ethyl}phenyl)amino](Oxo)acetic Acid
Length = 354
Score = 172 bits (435), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 150/274 (54%), Gaps = 26/274 (9%)
Query: 752 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 811
NK +NRY +V +DHSR+ L D +DYINA+ +Y+ TQGPL T G F
Sbjct: 74 NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTCGHF 129
Query: 812 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 865
W MVWE +S +VM+ ++ E+ +KC QYWP + +T +T+ +D++ + Y
Sbjct: 130 WEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIK--SYY 187
Query: 866 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 925
+R + E REI +T WPD GVPE PA FL FL +VR ES +
Sbjct: 188 TVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSL 238
Query: 926 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 982
+ GP++VHCSAG+GR+G F + D ++++ K +VDI + +R R ++QT
Sbjct: 239 SPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTA 298
Query: 983 DQYMFIHDALLEAV--LCGNTEIPASSQMITRKD 1014
DQ F + A++E + G++ + + ++ +D
Sbjct: 299 DQLRFSYLAVIEGAKFIMGDSSVQDQWKELSHED 332
Score = 171 bits (433), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 94/254 (37%), Positives = 140/254 (55%), Gaps = 24/254 (9%)
Query: 241 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 300
NK +NRY +V +DHSR+ L D +DYINA+ +Y+ TQGPL T G F
Sbjct: 74 NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTCGHF 129
Query: 301 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 354
W MVWE +S +VM+ ++ E+ +KC QYWP + +T +T+ +D++ + Y
Sbjct: 130 WEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIK--SYY 187
Query: 355 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 414
+R + E REI +T WPD GVPE PA FL FL +VR ES +
Sbjct: 188 TVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSL 238
Query: 415 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 471
+ GP++VHCSAG+GR+G F + D ++++ K +VDI + +R R ++QT
Sbjct: 239 SPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTA 298
Query: 472 DQYMFIHDALLEAV 485
DQ F + A++E
Sbjct: 299 DQLRFSYLAVIEGA 312
Score = 100 bits (249), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 93/199 (46%), Gaps = 40/199 (20%)
Query: 1304 NIRAEPSRFIS--ASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFIDGYRL 1361
+IR E S F A LP NK++NR + P + SR+ L E +DYINAS I
Sbjct: 56 DIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ----EDNDYINASLIKMEEA 111
Query: 1362 RSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------------- 1402
+ +YI TQGPL +T FW M+WE S VVML ++ E G
Sbjct: 112 QRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFED 171
Query: 1403 ---------------YVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQ 1447
Y +R+ ++ + +R + F WP+ GVP+S F++F+ +
Sbjct: 172 TNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFK 231
Query: 1448 VHKTKEQFGQDGPITVHCS 1466
V ++ + GP+ VHCS
Sbjct: 232 VRESGSLSPEHGPVVVHCS 250
Score = 77.0 bits (188), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 78/148 (52%), Gaps = 15/148 (10%)
Query: 1505 KCHQYWP--SERSIRYE------WFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQ 1556
KC QYWP E+ + +E + E I Y Y +R+ ++ + +R + F
Sbjct: 154 KCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSY----YTVRQLELENLTTQETREILHFH 209
Query: 1557 LIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVL 1613
WP+ GVP+S F++F+ +V ++ + GP+ VHCSAG+GR+G F T +++
Sbjct: 210 YTTWPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLM 269
Query: 1614 ERMQYEGVIDLFQTVRILRTQRPAMVQT 1641
++ + +D+ + + +R R ++QT
Sbjct: 270 DKRKDPSSVDIKKVLLEMRKFRMGLIQT 297
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 116/270 (42%), Gaps = 45/270 (16%)
Query: 508 EVGDTSTGMELEFKKLS----------NIRAEPSRFIS--ASLPCNKHKNRLVHILPVES 555
++G S ME EF+++ +IR E S F A LP NK++NR + P +
Sbjct: 29 QMGRGSMEMEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDH 88
Query: 556 SRVCLTPVRGDGFID--FIGQVHKTKEQFGQDGPITVHCSRLAQHIENLKANDNLKFSQ- 612
SR+ L D +I+ I + GP+ C + + K+ + ++
Sbjct: 89 SRIKLHQEDND-YINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRV 147
Query: 613 -EYESIEPGQQFTWDHSSMEMNKAKNRYANVIAYD------------------HSRVIL- 652
E S++ Q + + + N +I+ D +R IL
Sbjct: 148 MEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQLELENLTTQETREILH 207
Query: 653 ----STVD-GIPGRDG-FIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFI---TLSI 703
+ D G+P F++F+ +V ++ + GP+ VHCSAG+GR+G F T +
Sbjct: 208 FHYTTWPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLL 267
Query: 704 VLERMQYEGVIDLFQTVRILRTQRPAMVQT 733
++++ + +D+ + + +R R ++QT
Sbjct: 268 LMDKRKDPSSVDIKKVLLEMRKFRMGLIQT 297
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 1711 LLFILKSSLESSGVNLPVGPLIVHCSAGVGRTGCFIVID 1749
L F+ K ES ++ GP++VHCSAG+GR+G F + D
Sbjct: 226 LNFLFKVR-ESGSLSPEHGPVVVHCSAGIGRSGTFCLAD 263
>pdb|2CMA|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
Phosphatase 1b By Isothiazolidinone Heterocyclic
Phosphonate Mimetics
pdb|3A5J|A Chain A, Crystal Structure Of Protein-Tyrosine Phosphatase 1b
Length = 327
Score = 172 bits (435), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 150/274 (54%), Gaps = 26/274 (9%)
Query: 752 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 811
NK +NRY +V +DHSR+ L D +DYINA+ +Y+ TQGPL T G F
Sbjct: 46 NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTCGHF 101
Query: 812 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 865
W MVWE +S +VM+ ++ E+ +KC QYWP + +T +T+ +D++ + Y
Sbjct: 102 WEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIK--SYY 159
Query: 866 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 925
+R + E REI +T WPD GVPE PA FL FL +VR ES +
Sbjct: 160 TVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSL 210
Query: 926 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 982
+ GP++VHCSAG+GR+G F + D ++++ K +VDI + +R R ++QT
Sbjct: 211 SPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTA 270
Query: 983 DQYMFIHDALLEAV--LCGNTEIPASSQMITRKD 1014
DQ F + A++E + G++ + + ++ +D
Sbjct: 271 DQLRFSYLAVIEGAKFIMGDSSVQDQWKELSHED 304
Score = 171 bits (432), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 94/254 (37%), Positives = 140/254 (55%), Gaps = 24/254 (9%)
Query: 241 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 300
NK +NRY +V +DHSR+ L D +DYINA+ +Y+ TQGPL T G F
Sbjct: 46 NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTCGHF 101
Query: 301 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 354
W MVWE +S +VM+ ++ E+ +KC QYWP + +T +T+ +D++ + Y
Sbjct: 102 WEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIK--SYY 159
Query: 355 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 414
+R + E REI +T WPD GVPE PA FL FL +VR ES +
Sbjct: 160 TVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSL 210
Query: 415 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 471
+ GP++VHCSAG+GR+G F + D ++++ K +VDI + +R R ++QT
Sbjct: 211 SPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTA 270
Query: 472 DQYMFIHDALLEAV 485
DQ F + A++E
Sbjct: 271 DQLRFSYLAVIEGA 284
Score = 100 bits (249), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 93/199 (46%), Gaps = 40/199 (20%)
Query: 1304 NIRAEPSRFIS--ASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFIDGYRL 1361
+IR E S F A LP NK++NR + P + SR+ L E +DYINAS I
Sbjct: 28 DIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ----EDNDYINASLIKMEEA 83
Query: 1362 RSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------------- 1402
+ +YI TQGPL +T FW M+WE S VVML ++ E G
Sbjct: 84 QRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFED 143
Query: 1403 ---------------YVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQ 1447
Y +R+ ++ + +R + F WP+ GVP+S F++F+ +
Sbjct: 144 TNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFK 203
Query: 1448 VHKTKEQFGQDGPITVHCS 1466
V ++ + GP+ VHCS
Sbjct: 204 VRESGSLSPEHGPVVVHCS 222
Score = 77.4 bits (189), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 78/148 (52%), Gaps = 15/148 (10%)
Query: 1505 KCHQYWP--SERSIRYE------WFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQ 1556
KC QYWP E+ + +E + E I Y Y +R+ ++ + +R + F
Sbjct: 126 KCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSY----YTVRQLELENLTTQETREILHFH 181
Query: 1557 LIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVL 1613
WP+ GVP+S F++F+ +V ++ + GP+ VHCSAG+GR+G F T +++
Sbjct: 182 YTTWPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLM 241
Query: 1614 ERMQYEGVIDLFQTVRILRTQRPAMVQT 1641
++ + +D+ + + +R R ++QT
Sbjct: 242 DKRKDPSSVDIKKVLLEMRKFRMGLIQT 269
Score = 50.4 bits (119), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 112/262 (42%), Gaps = 45/262 (17%)
Query: 516 MELEFKKLS----------NIRAEPSRFIS--ASLPCNKHKNRLVHILPVESSRVCLTPV 563
ME EF+++ +IR E S F A LP NK++NR + P + SR+ L
Sbjct: 9 MEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQE 68
Query: 564 RGDGFID--FIGQVHKTKEQFGQDGPITVHCSRLAQHIENLKANDNLKFSQEYE--SIEP 619
D +I+ I + GP+ C + + K+ + ++ E S++
Sbjct: 69 DND-YINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKC 127
Query: 620 GQQFTWDHSSMEMNKAKNRYANVIAYD------------------HSRVIL-----STVD 656
Q + + + N +I+ D +R IL + D
Sbjct: 128 AQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHYTTWPD 187
Query: 657 -GIPGRDG-FIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVLERMQYE 711
G+P F++F+ +V ++ + GP+ VHCSAG+GR+G F T +++++ +
Sbjct: 188 FGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDP 247
Query: 712 GVIDLFQTVRILRTQRPAMVQT 733
+D+ + + +R R ++QT
Sbjct: 248 SSVDIKKVLLEMRKFRMGLIQT 269
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 1711 LLFILKSSLESSGVNLPVGPLIVHCSAGVGRTGCFIVID 1749
L F+ K ES ++ GP++VHCSAG+GR+G F + D
Sbjct: 198 LNFLFKVR-ESGSLSPEHGPVVVHCSAGIGRSGTFCLAD 235
>pdb|1NL9|A Chain A, Potent, Selective Protein Tyrosine Phosphatase 1b Inhibitor
Compound 12 Using A Linked-Fragment Strategy
pdb|1NNY|A Chain A, Potent, Selective Protein Tyrosine Phosphatase 1b Inhibitor
Compound 23 Using A Linked-fragment Strategy
pdb|1NO6|A Chain A, Potent, Selective Protein Tyrosine Phosphatase 1b Inhibitor
Compound 5 Using A Linked-fragment Strategy
pdb|1NZ7|A Chain A, Potent, Selective Inhibitors Of Protein Tyrosine Phosphatase
1b Using A Second Phosphotyrosine Binding Site, Complexed
With Compound 19.
pdb|1ONY|A Chain A, Oxalyl-aryl-amino Benzoic Acid Inhibitors Of Ptp1b, Compound
17
pdb|1ONZ|A Chain A, Oxalyl-Aryl-Amino Benzoic Acid Inhibitors Of Ptp1b, Compound
8b
pdb|1OEM|X Chain X, Ptp1b With The Catalytic Cysteine Oxidized To A
Sulfenyl-Amide Bond
pdb|1OES|A Chain A, Oxidation State Of Protein Tyrosine Phosphatase 1b
pdb|1PXH|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b With
Potent And Selective Bidentate Inhibitor Compound 2
pdb|1PH0|A Chain A, Non-Carboxylic Acid-Containing Inhibitor Of Ptp1b Targeting
The Second Phosphotyrosine Site
pdb|1PYN|A Chain A, Dual-Site Potent, Selective Protein Tyrosine Phosphatase 1b
Inhibitor Using A Linked Fragment Strategy And A Malonate
Head On The First Site
pdb|1Q1M|A Chain A, A Highly Efficient Approach To A Selective And Cell Active
Ptp1b Inhibitors
pdb|1QXK|A Chain A, Monoacid-Based, Cell Permeable, Selective Inhibitors Of
Protein Tyrosine Phosphatase 1b
pdb|1SUG|A Chain A, 1.95 A Structure Of Apo Protein Tyrosine Phosphatase 1b
pdb|1XBO|A Chain A, Ptp1b Complexed With Isoxazole Carboxylic Acid
pdb|1WAX|A Chain A, Protein Tyrosine Phosphatase 1b With Active Site Inhibitor
pdb|2BGD|A Chain A, Structure-Based Design Of Protein Tyrosine Phosphatase-1b
Inhibitors
pdb|2BGE|A Chain A, Structure-Based Design Of Protein Tyrosine Phosphatase-1b
Inhibitors
pdb|2CM7|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
Phosphatase 1b By Isothiazolidinone Heterocyclic
Phosphonate Mimetics
pdb|2CM8|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
Phosphatase 1b By Isothiazolidinone Heterocyclic
Phosphonate Mimetics
pdb|2CNF|A Chain A, Structural Insights Into The Design Of Nonpeptidic
Isothiazolidinone-Containing Inhibitors Of Protein
Tyrosine Phosphatase 1b
pdb|2CNG|A Chain A, Structural Insights Into The Design Of Nonpeptidic
Isothiazolidinone-Containing Inhibitors Of Protein
Tyrosine Phosphatase 1b
pdb|2CNH|A Chain A, Structural Insights Into The Design Of Nonpeptidic
Isothiazolidinone-Containing Inhibitors Of Protein
Tyrosine Phosphatase 1b
pdb|2CNI|A Chain A, Structural Insights Into The Design Of Nonpeptidic
Isothiazolidinone-Containing Inhibitors Of Protein
Tyrosine Phosphatase 1b
pdb|2HNP|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase 1b
pdb|2HNQ|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase 1b
pdb|2VEU|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b In
Complex With An Isothiazolidinone-Containing Inhibitor
pdb|2VEV|A Chain A, Crystal Strucutre Of Protein Tyrosine Phosphatase 1b In
Complex With An Isothiazolidinone-Containing Inhibitor
pdb|2VEW|A Chain A, Crystal Strucutre Of Protein Tyrosine Phosphatase 1b In
Complex With An Isothiazolidinone-Containing Inhibitor
pdb|2VEX|A Chain A, Crystal Strucutre Of Protein Tyrosine Phosphatase 1b In
Complex With An Isothiazolidinone-Containing Inhibitor
pdb|2VEY|A Chain A, Crystal Strucutre Of Protein Tyrosine Phosphatase 1b In
Complex With An Isothiazolidinone-Containing Inhibitor
pdb|3D9C|A Chain A, Crystal Structure Ptp1b Complex With Aryl Seleninic Acid
pdb|3EAX|A Chain A, Crystal Structure Ptp1b Complex With Small Molecule Compound
Lzp-6
pdb|3EB1|A Chain A, Crystal Structure Ptp1b Complex With Small Molecule
Inhibitor Lzp-25
pdb|3I7Z|A Chain A, Protein Tyrosine Phosphatase 1b - Transition State Analog Fo
First Catalytic Step
pdb|3I80|A Chain A, Protein Tyrosine Phosphatase 1b - Transition State Analog Fo
Second Catalytic Step
Length = 321
Score = 172 bits (435), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 150/274 (54%), Gaps = 26/274 (9%)
Query: 752 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 811
NK +NRY +V +DHSR+ L D +DYINA+ +Y+ TQGPL T G F
Sbjct: 40 NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTCGHF 95
Query: 812 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 865
W MVWE +S +VM+ ++ E+ +KC QYWP + +T +T+ +D++ + Y
Sbjct: 96 WEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIK--SYY 153
Query: 866 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 925
+R + E REI +T WPD GVPE PA FL FL +VR ES +
Sbjct: 154 TVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSL 204
Query: 926 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 982
+ GP++VHCSAG+GR+G F + D ++++ K +VDI + +R R ++QT
Sbjct: 205 SPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTA 264
Query: 983 DQYMFIHDALLEAV--LCGNTEIPASSQMITRKD 1014
DQ F + A++E + G++ + + ++ +D
Sbjct: 265 DQLRFSYLAVIEGAKFIMGDSSVQDQWKELSHED 298
Score = 171 bits (432), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 94/254 (37%), Positives = 140/254 (55%), Gaps = 24/254 (9%)
Query: 241 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 300
NK +NRY +V +DHSR+ L D +DYINA+ +Y+ TQGPL T G F
Sbjct: 40 NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTCGHF 95
Query: 301 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 354
W MVWE +S +VM+ ++ E+ +KC QYWP + +T +T+ +D++ + Y
Sbjct: 96 WEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIK--SYY 153
Query: 355 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 414
+R + E REI +T WPD GVPE PA FL FL +VR ES +
Sbjct: 154 TVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSL 204
Query: 415 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 471
+ GP++VHCSAG+GR+G F + D ++++ K +VDI + +R R ++QT
Sbjct: 205 SPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTA 264
Query: 472 DQYMFIHDALLEAV 485
DQ F + A++E
Sbjct: 265 DQLRFSYLAVIEGA 278
Score = 100 bits (249), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 93/199 (46%), Gaps = 40/199 (20%)
Query: 1304 NIRAEPSRFIS--ASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFIDGYRL 1361
+IR E S F A LP NK++NR + P + SR+ L E +DYINAS I
Sbjct: 22 DIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ----EDNDYINASLIKMEEA 77
Query: 1362 RSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------------- 1402
+ +YI TQGPL +T FW M+WE S VVML ++ E G
Sbjct: 78 QRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFED 137
Query: 1403 ---------------YVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQ 1447
Y +R+ ++ + +R + F WP+ GVP+S F++F+ +
Sbjct: 138 TNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFK 197
Query: 1448 VHKTKEQFGQDGPITVHCS 1466
V ++ + GP+ VHCS
Sbjct: 198 VRESGSLSPEHGPVVVHCS 216
Score = 77.4 bits (189), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 78/148 (52%), Gaps = 15/148 (10%)
Query: 1505 KCHQYWP--SERSIRYE------WFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQ 1556
KC QYWP E+ + +E + E I Y Y +R+ ++ + +R + F
Sbjct: 120 KCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSY----YTVRQLELENLTTQETREILHFH 175
Query: 1557 LIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVL 1613
WP+ GVP+S F++F+ +V ++ + GP+ VHCSAG+GR+G F T +++
Sbjct: 176 YTTWPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLM 235
Query: 1614 ERMQYEGVIDLFQTVRILRTQRPAMVQT 1641
++ + +D+ + + +R R ++QT
Sbjct: 236 DKRKDPSSVDIKKVLLEMRKFRMGLIQT 263
Score = 50.4 bits (119), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 112/262 (42%), Gaps = 45/262 (17%)
Query: 516 MELEFKKLS----------NIRAEPSRFIS--ASLPCNKHKNRLVHILPVESSRVCLTPV 563
ME EF+++ +IR E S F A LP NK++NR + P + SR+ L
Sbjct: 3 MEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQE 62
Query: 564 RGDGFID--FIGQVHKTKEQFGQDGPITVHCSRLAQHIENLKANDNLKFSQEYE--SIEP 619
D +I+ I + GP+ C + + K+ + ++ E S++
Sbjct: 63 DND-YINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKC 121
Query: 620 GQQFTWDHSSMEMNKAKNRYANVIAYD------------------HSRVIL-----STVD 656
Q + + + N +I+ D +R IL + D
Sbjct: 122 AQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHYTTWPD 181
Query: 657 -GIPGRDG-FIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVLERMQYE 711
G+P F++F+ +V ++ + GP+ VHCSAG+GR+G F T +++++ +
Sbjct: 182 FGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDP 241
Query: 712 GVIDLFQTVRILRTQRPAMVQT 733
+D+ + + +R R ++QT
Sbjct: 242 SSVDIKKVLLEMRKFRMGLIQT 263
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 1711 LLFILKSSLESSGVNLPVGPLIVHCSAGVGRTGCFIVID 1749
L F+ K ES ++ GP++VHCSAG+GR+G F + D
Sbjct: 192 LNFLFKVR-ESGSLSPEHGPVVVHCSAGIGRSGTFCLAD 229
>pdb|2NT7|A Chain A, Crystal Structure Of Ptp1b-inhibitor Complex
pdb|2NTA|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
Length = 299
Score = 172 bits (435), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 150/274 (54%), Gaps = 26/274 (9%)
Query: 752 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 811
NK +NRY +V +DHSR+ L D +DYINA+ +Y+ TQGPL T G F
Sbjct: 40 NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTCGHF 95
Query: 812 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 865
W MVWE +S +VM+ ++ E+ +KC QYWP + +T +T+ +D++ + Y
Sbjct: 96 WEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIK--SYY 153
Query: 866 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 925
+R + E REI +T WPD GVPE PA FL FL +VR ES +
Sbjct: 154 TVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSL 204
Query: 926 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 982
+ GP++VHCSAG+GR+G F + D ++++ K +VDI + +R R ++QT
Sbjct: 205 SPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLDMRKFRMGLIQTA 264
Query: 983 DQYMFIHDALLEAV--LCGNTEIPASSQMITRKD 1014
DQ F + A++E + G++ + + ++ +D
Sbjct: 265 DQLRFSYLAVIEGAKFIMGDSSVQDQWKELSHED 298
Score = 171 bits (432), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 94/254 (37%), Positives = 140/254 (55%), Gaps = 24/254 (9%)
Query: 241 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 300
NK +NRY +V +DHSR+ L D +DYINA+ +Y+ TQGPL T G F
Sbjct: 40 NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTCGHF 95
Query: 301 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 354
W MVWE +S +VM+ ++ E+ +KC QYWP + +T +T+ +D++ + Y
Sbjct: 96 WEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIK--SYY 153
Query: 355 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 414
+R + E REI +T WPD GVPE PA FL FL +VR ES +
Sbjct: 154 TVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSL 204
Query: 415 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 471
+ GP++VHCSAG+GR+G F + D ++++ K +VDI + +R R ++QT
Sbjct: 205 SPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLDMRKFRMGLIQTA 264
Query: 472 DQYMFIHDALLEAV 485
DQ F + A++E
Sbjct: 265 DQLRFSYLAVIEGA 278
Score = 100 bits (249), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 93/199 (46%), Gaps = 40/199 (20%)
Query: 1304 NIRAEPSRFIS--ASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFIDGYRL 1361
+IR E S F A LP NK++NR + P + SR+ L E +DYINAS I
Sbjct: 22 DIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ----EDNDYINASLIKMEEA 77
Query: 1362 RSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------------- 1402
+ +YI TQGPL +T FW M+WE S VVML ++ E G
Sbjct: 78 QRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFED 137
Query: 1403 ---------------YVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQ 1447
Y +R+ ++ + +R + F WP+ GVP+S F++F+ +
Sbjct: 138 TNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFK 197
Query: 1448 VHKTKEQFGQDGPITVHCS 1466
V ++ + GP+ VHCS
Sbjct: 198 VRESGSLSPEHGPVVVHCS 216
Score = 77.0 bits (188), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 78/148 (52%), Gaps = 15/148 (10%)
Query: 1505 KCHQYWP--SERSIRYE------WFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQ 1556
KC QYWP E+ + +E + E I Y Y +R+ ++ + +R + F
Sbjct: 120 KCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSY----YTVRQLELENLTTQETREILHFH 175
Query: 1557 LIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVL 1613
WP+ GVP+S F++F+ +V ++ + GP+ VHCSAG+GR+G F T +++
Sbjct: 176 YTTWPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLM 235
Query: 1614 ERMQYEGVIDLFQTVRILRTQRPAMVQT 1641
++ + +D+ + + +R R ++QT
Sbjct: 236 DKRKDPSSVDIKKVLLDMRKFRMGLIQT 263
Score = 50.4 bits (119), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 112/262 (42%), Gaps = 45/262 (17%)
Query: 516 MELEFKKLS----------NIRAEPSRFIS--ASLPCNKHKNRLVHILPVESSRVCLTPV 563
ME EF+++ +IR E S F A LP NK++NR + P + SR+ L
Sbjct: 3 MEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQE 62
Query: 564 RGDGFID--FIGQVHKTKEQFGQDGPITVHCSRLAQHIENLKANDNLKFSQEYE--SIEP 619
D +I+ I + GP+ C + + K+ + ++ E S++
Sbjct: 63 DND-YINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKC 121
Query: 620 GQQFTWDHSSMEMNKAKNRYANVIAYD------------------HSRVIL-----STVD 656
Q + + + N +I+ D +R IL + D
Sbjct: 122 AQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHYTTWPD 181
Query: 657 -GIPGR-DGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVLERMQYE 711
G+P F++F+ +V ++ + GP+ VHCSAG+GR+G F T +++++ +
Sbjct: 182 FGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDP 241
Query: 712 GVIDLFQTVRILRTQRPAMVQT 733
+D+ + + +R R ++QT
Sbjct: 242 SSVDIKKVLLDMRKFRMGLIQT 263
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 1711 LLFILKSSLESSGVNLPVGPLIVHCSAGVGRTGCFIVID 1749
L F+ K ES ++ GP++VHCSAG+GR+G F + D
Sbjct: 192 LNFLFKVR-ESGSLSPEHGPVVVHCSAGIGRSGTFCLAD 229
>pdb|2AZR|A Chain A, Crystal Structure Of Ptp1b With Bicyclic Thiophene Inhibitor
pdb|2B07|A Chain A, Crystal Structure Of Ptp1b With Tricyclic Thiophene
Inhibitor.
pdb|2H4G|A Chain A, Crystal Structure Of Ptp1b With Monocyclic Thiophene
Inhibitor
pdb|2H4K|A Chain A, Crystal Structure Of Ptp1b With A Monocyclic Thiophene
Inhibitor
pdb|2HB1|A Chain A, Crystal Structure Of Ptp1b With Monocyclic Thiophene
Inhibitor
pdb|2QBP|A Chain A, Crystal Structure Of Ptp1b-inhibitor Complex
pdb|2QBQ|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
pdb|2QBR|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
pdb|2QBS|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
pdb|2ZMM|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
pdb|2ZN7|A Chain A, Crystal Structures Of Ptp1b-Inhibitor Complexes
Length = 299
Score = 171 bits (434), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 150/274 (54%), Gaps = 26/274 (9%)
Query: 752 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 811
NK +NRY +V +DHSR+ L D +DYINA+ +Y+ TQGPL T G F
Sbjct: 40 NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTCGHF 95
Query: 812 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 865
W MVWE +S +VM+ ++ E+ +KC QYWP + +T +T+ +D++ + Y
Sbjct: 96 WEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIK--SYY 153
Query: 866 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 925
+R + E REI +T WPD GVPE PA FL FL +VR ES +
Sbjct: 154 TVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSL 204
Query: 926 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 982
+ GP++VHCSAG+GR+G F + D ++++ K +VDI + +R R ++QT
Sbjct: 205 SPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTA 264
Query: 983 DQYMFIHDALLEAV--LCGNTEIPASSQMITRKD 1014
DQ F + A++E + G++ + + ++ +D
Sbjct: 265 DQLRFSYLAVIEGAKFIMGDSSVQDQWKELSHED 298
Score = 171 bits (432), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 94/254 (37%), Positives = 140/254 (55%), Gaps = 24/254 (9%)
Query: 241 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 300
NK +NRY +V +DHSR+ L D +DYINA+ +Y+ TQGPL T G F
Sbjct: 40 NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTCGHF 95
Query: 301 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 354
W MVWE +S +VM+ ++ E+ +KC QYWP + +T +T+ +D++ + Y
Sbjct: 96 WEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIK--SYY 153
Query: 355 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 414
+R + E REI +T WPD GVPE PA FL FL +VR ES +
Sbjct: 154 TVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSL 204
Query: 415 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 471
+ GP++VHCSAG+GR+G F + D ++++ K +VDI + +R R ++QT
Sbjct: 205 SPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTA 264
Query: 472 DQYMFIHDALLEAV 485
DQ F + A++E
Sbjct: 265 DQLRFSYLAVIEGA 278
Score = 100 bits (249), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 93/199 (46%), Gaps = 40/199 (20%)
Query: 1304 NIRAEPSRFIS--ASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFIDGYRL 1361
+IR E S F A LP NK++NR + P + SR+ L E +DYINAS I
Sbjct: 22 DIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ----EDNDYINASLIKMEEA 77
Query: 1362 RSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------------- 1402
+ +YI TQGPL +T FW M+WE S VVML ++ E G
Sbjct: 78 QRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFED 137
Query: 1403 ---------------YVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQ 1447
Y +R+ ++ + +R + F WP+ GVP+S F++F+ +
Sbjct: 138 TNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFK 197
Query: 1448 VHKTKEQFGQDGPITVHCS 1466
V ++ + GP+ VHCS
Sbjct: 198 VRESGSLSPEHGPVVVHCS 216
Score = 77.0 bits (188), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 78/148 (52%), Gaps = 15/148 (10%)
Query: 1505 KCHQYWP--SERSIRYE------WFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQ 1556
KC QYWP E+ + +E + E I Y Y +R+ ++ + +R + F
Sbjct: 120 KCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSY----YTVRQLELENLTTQETREILHFH 175
Query: 1557 LIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVL 1613
WP+ GVP+S F++F+ +V ++ + GP+ VHCSAG+GR+G F T +++
Sbjct: 176 YTTWPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLM 235
Query: 1614 ERMQYEGVIDLFQTVRILRTQRPAMVQT 1641
++ + +D+ + + +R R ++QT
Sbjct: 236 DKRKDPSSVDIKKVLLEMRKFRMGLIQT 263
Score = 50.4 bits (119), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 112/262 (42%), Gaps = 45/262 (17%)
Query: 516 MELEFKKLS----------NIRAEPSRFIS--ASLPCNKHKNRLVHILPVESSRVCLTPV 563
ME EF+++ +IR E S F A LP NK++NR + P + SR+ L
Sbjct: 3 MEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQE 62
Query: 564 RGDGFID--FIGQVHKTKEQFGQDGPITVHCSRLAQHIENLKANDNLKFSQEYE--SIEP 619
D +I+ I + GP+ C + + K+ + ++ E S++
Sbjct: 63 DND-YINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKC 121
Query: 620 GQQFTWDHSSMEMNKAKNRYANVIAYD------------------HSRVIL-----STVD 656
Q + + + N +I+ D +R IL + D
Sbjct: 122 AQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHYTTWPD 181
Query: 657 -GIPGR-DGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVLERMQYE 711
G+P F++F+ +V ++ + GP+ VHCSAG+GR+G F T +++++ +
Sbjct: 182 FGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDP 241
Query: 712 GVIDLFQTVRILRTQRPAMVQT 733
+D+ + + +R R ++QT
Sbjct: 242 SSVDIKKVLLEMRKFRMGLIQT 263
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 1711 LLFILKSSLESSGVNLPVGPLIVHCSAGVGRTGCFIVID 1749
L F+ K ES ++ GP++VHCSAG+GR+G F + D
Sbjct: 192 LNFLFKVR-ESGSLSPEHGPVVVHCSAGIGRSGTFCLAD 229
>pdb|1G7G|A Chain A, Human Ptp1b Catalytic Domain Complexes With Pnu179326
pdb|1JF7|A Chain A, Human Ptp1b Catalytic Domain Complexed With Pnu177836
pdb|1JF7|B Chain B, Human Ptp1b Catalytic Domain Complexed With Pnu177836
pdb|1KAK|A Chain A, Human Tyrosine Phosphatase 1b Complexed With An Inhibitor
pdb|1KAV|A Chain A, Human Tyrosine Phosphatase 1b Complexed With An Inhibitor
pdb|1T48|A Chain A, Allosteric Inhibition Of Protein Tyrosine Phosphatase 1b
pdb|1T49|A Chain A, Allosteric Inhibition Of Protein Tyrosine Phosphatase 1b
pdb|1T4J|A Chain A, Allosteric Inhibition Of Protein Tyrosine Phosphatase 1b
pdb|2F6T|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F6V|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F6W|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F6Y|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F6Z|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F70|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F71|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
Length = 298
Score = 171 bits (434), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 150/274 (54%), Gaps = 26/274 (9%)
Query: 752 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 811
NK +NRY +V +DHSR+ L D +DYINA+ +Y+ TQGPL T G F
Sbjct: 40 NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTCGHF 95
Query: 812 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 865
W MVWE +S +VM+ ++ E+ +KC QYWP + +T +T+ +D++ + Y
Sbjct: 96 WEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIK--SYY 153
Query: 866 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 925
+R + E REI +T WPD GVPE PA FL FL +VR ES +
Sbjct: 154 TVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSL 204
Query: 926 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 982
+ GP++VHCSAG+GR+G F + D ++++ K +VDI + +R R ++QT
Sbjct: 205 SPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTA 264
Query: 983 DQYMFIHDALLEAV--LCGNTEIPASSQMITRKD 1014
DQ F + A++E + G++ + + ++ +D
Sbjct: 265 DQLRFSYLAVIEGAKFIMGDSSVQDQWKELSHED 298
Score = 171 bits (432), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 94/254 (37%), Positives = 140/254 (55%), Gaps = 24/254 (9%)
Query: 241 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 300
NK +NRY +V +DHSR+ L D +DYINA+ +Y+ TQGPL T G F
Sbjct: 40 NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTCGHF 95
Query: 301 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 354
W MVWE +S +VM+ ++ E+ +KC QYWP + +T +T+ +D++ + Y
Sbjct: 96 WEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIK--SYY 153
Query: 355 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 414
+R + E REI +T WPD GVPE PA FL FL +VR ES +
Sbjct: 154 TVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSL 204
Query: 415 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 471
+ GP++VHCSAG+GR+G F + D ++++ K +VDI + +R R ++QT
Sbjct: 205 SPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTA 264
Query: 472 DQYMFIHDALLEAV 485
DQ F + A++E
Sbjct: 265 DQLRFSYLAVIEGA 278
Score = 100 bits (249), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 93/199 (46%), Gaps = 40/199 (20%)
Query: 1304 NIRAEPSRFIS--ASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFIDGYRL 1361
+IR E S F A LP NK++NR + P + SR+ L E +DYINAS I
Sbjct: 22 DIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ----EDNDYINASLIKMEEA 77
Query: 1362 RSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------------- 1402
+ +YI TQGPL +T FW M+WE S VVML ++ E G
Sbjct: 78 QRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFED 137
Query: 1403 ---------------YVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQ 1447
Y +R+ ++ + +R + F WP+ GVP+S F++F+ +
Sbjct: 138 TNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFK 197
Query: 1448 VHKTKEQFGQDGPITVHCS 1466
V ++ + GP+ VHCS
Sbjct: 198 VRESGSLSPEHGPVVVHCS 216
Score = 77.0 bits (188), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 78/148 (52%), Gaps = 15/148 (10%)
Query: 1505 KCHQYWP--SERSIRYE------WFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQ 1556
KC QYWP E+ + +E + E I Y Y +R+ ++ + +R + F
Sbjct: 120 KCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSY----YTVRQLELENLTTQETREILHFH 175
Query: 1557 LIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVL 1613
WP+ GVP+S F++F+ +V ++ + GP+ VHCSAG+GR+G F T +++
Sbjct: 176 YTTWPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLM 235
Query: 1614 ERMQYEGVIDLFQTVRILRTQRPAMVQT 1641
++ + +D+ + + +R R ++QT
Sbjct: 236 DKRKDPSSVDIKKVLLEMRKFRMGLIQT 263
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 112/262 (42%), Gaps = 45/262 (17%)
Query: 516 MELEFKKLS----------NIRAEPSRFIS--ASLPCNKHKNRLVHILPVESSRVCLTPV 563
ME EF+++ +IR E S F A LP NK++NR + P + SR+ L
Sbjct: 3 MEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQE 62
Query: 564 RGDGFID--FIGQVHKTKEQFGQDGPITVHCSRLAQHIENLKANDNLKFSQEYE--SIEP 619
D +I+ I + GP+ C + + K+ + ++ E S++
Sbjct: 63 DND-YINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKC 121
Query: 620 GQQFTWDHSSMEMNKAKNRYANVIAYD------------------HSRVIL-----STVD 656
Q + + + N +I+ D +R IL + D
Sbjct: 122 AQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHYTTWPD 181
Query: 657 -GIPGR-DGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVLERMQYE 711
G+P F++F+ +V ++ + GP+ VHCSAG+GR+G F T +++++ +
Sbjct: 182 FGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDP 241
Query: 712 GVIDLFQTVRILRTQRPAMVQT 733
+D+ + + +R R ++QT
Sbjct: 242 SSVDIKKVLLEMRKFRMGLIQT 263
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 1711 LLFILKSSLESSGVNLPVGPLIVHCSAGVGRTGCFIVID 1749
L F+ K ES ++ GP++VHCSAG+GR+G F + D
Sbjct: 192 LNFLFKVR-ESGSLSPEHGPVVVHCSAGIGRSGTFCLAD 229
>pdb|2CM2|A Chain A, Structure Of Protein Tyrosine Phosphatase 1b (P212121)
pdb|2CM3|A Chain A, Structure Of Protein Tyrosine Phosphatase 1b (C2)
pdb|2CM3|B Chain B, Structure Of Protein Tyrosine Phosphatase 1b (C2)
pdb|2CMB|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
Phosphatase 1b By Isothiazolidinone Heterocyclic
Phosphonate Mimetics
pdb|2CMC|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
Phosphatase 1b By Isothiazolidinone Heterocyclic
Phosphonate Mimetics
pdb|2CNE|A Chain A, Structural Insights Into The Design Of Nonpeptidic
Isothiazolidinone-Containing Inhibitors Of Protein
Tyrosine Phosphatase 1b
Length = 304
Score = 171 bits (434), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 150/274 (54%), Gaps = 26/274 (9%)
Query: 752 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 811
NK +NRY +V +DHSR+ L D +DYINA+ +Y+ TQGPL T G F
Sbjct: 46 NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTCGHF 101
Query: 812 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 865
W MVWE +S +VM+ ++ E+ +KC QYWP + +T +T+ +D++ + Y
Sbjct: 102 WEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIK--SYY 159
Query: 866 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 925
+R + E REI +T WPD GVPE PA FL FL +VR ES +
Sbjct: 160 TVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSL 210
Query: 926 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 982
+ GP++VHCSAG+GR+G F + D ++++ K +VDI + +R R ++QT
Sbjct: 211 SPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTA 270
Query: 983 DQYMFIHDALLEAV--LCGNTEIPASSQMITRKD 1014
DQ F + A++E + G++ + + ++ +D
Sbjct: 271 DQLRFSYLAVIEGAKFIMGDSSVQDQWKELSHED 304
Score = 171 bits (432), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 94/254 (37%), Positives = 140/254 (55%), Gaps = 24/254 (9%)
Query: 241 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 300
NK +NRY +V +DHSR+ L D +DYINA+ +Y+ TQGPL T G F
Sbjct: 46 NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTCGHF 101
Query: 301 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 354
W MVWE +S +VM+ ++ E+ +KC QYWP + +T +T+ +D++ + Y
Sbjct: 102 WEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIK--SYY 159
Query: 355 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 414
+R + E REI +T WPD GVPE PA FL FL +VR ES +
Sbjct: 160 TVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSL 210
Query: 415 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 471
+ GP++VHCSAG+GR+G F + D ++++ K +VDI + +R R ++QT
Sbjct: 211 SPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTA 270
Query: 472 DQYMFIHDALLEAV 485
DQ F + A++E
Sbjct: 271 DQLRFSYLAVIEGA 284
Score = 100 bits (249), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 93/199 (46%), Gaps = 40/199 (20%)
Query: 1304 NIRAEPSRFIS--ASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFIDGYRL 1361
+IR E S F A LP NK++NR + P + SR+ L E +DYINAS I
Sbjct: 28 DIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ----EDNDYINASLIKMEEA 83
Query: 1362 RSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------------- 1402
+ +YI TQGPL +T FW M+WE S VVML ++ E G
Sbjct: 84 QRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFED 143
Query: 1403 ---------------YVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQ 1447
Y +R+ ++ + +R + F WP+ GVP+S F++F+ +
Sbjct: 144 TNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFK 203
Query: 1448 VHKTKEQFGQDGPITVHCS 1466
V ++ + GP+ VHCS
Sbjct: 204 VRESGSLSPEHGPVVVHCS 222
Score = 77.0 bits (188), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 78/148 (52%), Gaps = 15/148 (10%)
Query: 1505 KCHQYWP--SERSIRYE------WFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQ 1556
KC QYWP E+ + +E + E I Y Y +R+ ++ + +R + F
Sbjct: 126 KCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSY----YTVRQLELENLTTQETREILHFH 181
Query: 1557 LIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVL 1613
WP+ GVP+S F++F+ +V ++ + GP+ VHCSAG+GR+G F T +++
Sbjct: 182 YTTWPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLM 241
Query: 1614 ERMQYEGVIDLFQTVRILRTQRPAMVQT 1641
++ + +D+ + + +R R ++QT
Sbjct: 242 DKRKDPSSVDIKKVLLEMRKFRMGLIQT 269
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 112/262 (42%), Gaps = 45/262 (17%)
Query: 516 MELEFKKLS----------NIRAEPSRFIS--ASLPCNKHKNRLVHILPVESSRVCLTPV 563
ME EF+++ +IR E S F A LP NK++NR + P + SR+ L
Sbjct: 9 MEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQE 68
Query: 564 RGDGFID--FIGQVHKTKEQFGQDGPITVHCSRLAQHIENLKANDNLKFSQEYE--SIEP 619
D +I+ I + GP+ C + + K+ + ++ E S++
Sbjct: 69 DND-YINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKC 127
Query: 620 GQQFTWDHSSMEMNKAKNRYANVIAYD------------------HSRVIL-----STVD 656
Q + + + N +I+ D +R IL + D
Sbjct: 128 AQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHYTTWPD 187
Query: 657 -GIPGR-DGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVLERMQYE 711
G+P F++F+ +V ++ + GP+ VHCSAG+GR+G F T +++++ +
Sbjct: 188 FGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDP 247
Query: 712 GVIDLFQTVRILRTQRPAMVQT 733
+D+ + + +R R ++QT
Sbjct: 248 SSVDIKKVLLEMRKFRMGLIQT 269
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 1711 LLFILKSSLESSGVNLPVGPLIVHCSAGVGRTGCFIVID 1749
L F+ K ES ++ GP++VHCSAG+GR+G F + D
Sbjct: 198 LNFLFKVR-ESGSLSPEHGPVVVHCSAGIGRSGTFCLAD 235
>pdb|1BZJ|A Chain A, Human Ptp1b Complexed With Tpicooh
Length = 297
Score = 171 bits (434), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 150/274 (54%), Gaps = 26/274 (9%)
Query: 752 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 811
NK +NRY +V +DHSR+ L D +DYINA+ +Y+ TQGPL T G F
Sbjct: 39 NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTCGHF 94
Query: 812 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 865
W MVWE +S +VM+ ++ E+ +KC QYWP + +T +T+ +D++ + Y
Sbjct: 95 WEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIK--SYY 152
Query: 866 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 925
+R + E REI +T WPD GVPE PA FL FL +VR ES +
Sbjct: 153 TVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSL 203
Query: 926 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 982
+ GP++VHCSAG+GR+G F + D ++++ K +VDI + +R R ++QT
Sbjct: 204 SPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTA 263
Query: 983 DQYMFIHDALLEAV--LCGNTEIPASSQMITRKD 1014
DQ F + A++E + G++ + + ++ +D
Sbjct: 264 DQLRFSYLAVIEGAKFIMGDSSVQDQWKELSHED 297
Score = 170 bits (431), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 94/254 (37%), Positives = 140/254 (55%), Gaps = 24/254 (9%)
Query: 241 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 300
NK +NRY +V +DHSR+ L D +DYINA+ +Y+ TQGPL T G F
Sbjct: 39 NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTCGHF 94
Query: 301 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 354
W MVWE +S +VM+ ++ E+ +KC QYWP + +T +T+ +D++ + Y
Sbjct: 95 WEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIK--SYY 152
Query: 355 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 414
+R + E REI +T WPD GVPE PA FL FL +VR ES +
Sbjct: 153 TVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSL 203
Query: 415 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 471
+ GP++VHCSAG+GR+G F + D ++++ K +VDI + +R R ++QT
Sbjct: 204 SPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTA 263
Query: 472 DQYMFIHDALLEAV 485
DQ F + A++E
Sbjct: 264 DQLRFSYLAVIEGA 277
Score = 100 bits (248), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 93/199 (46%), Gaps = 40/199 (20%)
Query: 1304 NIRAEPSRFIS--ASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFIDGYRL 1361
+IR E S F A LP NK++NR + P + SR+ L E +DYINAS I
Sbjct: 21 DIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ----EDNDYINASLIKMEEA 76
Query: 1362 RSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------------- 1402
+ +YI TQGPL +T FW M+WE S VVML ++ E G
Sbjct: 77 QRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFED 136
Query: 1403 ---------------YVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQ 1447
Y +R+ ++ + +R + F WP+ GVP+S F++F+ +
Sbjct: 137 TNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFK 196
Query: 1448 VHKTKEQFGQDGPITVHCS 1466
V ++ + GP+ VHCS
Sbjct: 197 VRESGSLSPEHGPVVVHCS 215
Score = 77.0 bits (188), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 78/148 (52%), Gaps = 15/148 (10%)
Query: 1505 KCHQYWP--SERSIRYE------WFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQ 1556
KC QYWP E+ + +E + E I Y Y +R+ ++ + +R + F
Sbjct: 119 KCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSY----YTVRQLELENLTTQETREILHFH 174
Query: 1557 LIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVL 1613
WP+ GVP+S F++F+ +V ++ + GP+ VHCSAG+GR+G F T +++
Sbjct: 175 YTTWPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLM 234
Query: 1614 ERMQYEGVIDLFQTVRILRTQRPAMVQT 1641
++ + +D+ + + +R R ++QT
Sbjct: 235 DKRKDPSSVDIKKVLLEMRKFRMGLIQT 262
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 112/262 (42%), Gaps = 45/262 (17%)
Query: 516 MELEFKKLS----------NIRAEPSRFIS--ASLPCNKHKNRLVHILPVESSRVCLTPV 563
ME EF+++ +IR E S F A LP NK++NR + P + SR+ L
Sbjct: 2 MEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQE 61
Query: 564 RGDGFID--FIGQVHKTKEQFGQDGPITVHCSRLAQHIENLKANDNLKFSQEYE--SIEP 619
D +I+ I + GP+ C + + K+ + ++ E S++
Sbjct: 62 DND-YINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKC 120
Query: 620 GQQFTWDHSSMEMNKAKNRYANVIAYD------------------HSRVIL-----STVD 656
Q + + + N +I+ D +R IL + D
Sbjct: 121 AQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHYTTWPD 180
Query: 657 -GIPGRDG-FIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVLERMQYE 711
G+P F++F+ +V ++ + GP+ VHCSAG+GR+G F T +++++ +
Sbjct: 181 FGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDP 240
Query: 712 GVIDLFQTVRILRTQRPAMVQT 733
+D+ + + +R R ++QT
Sbjct: 241 SSVDIKKVLLEMRKFRMGLIQT 262
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 1711 LLFILKSSLESSGVNLPVGPLIVHCSAGVGRTGCFIVID 1749
L F+ K ES ++ GP++VHCSAG+GR+G F + D
Sbjct: 191 LNFLFKVR-ESGSLSPEHGPVVVHCSAGIGRSGTFCLAD 228
>pdb|1G7F|A Chain A, Human Ptp1b Catalytic Domain Complexed With Pnu177496
Length = 298
Score = 171 bits (434), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 150/274 (54%), Gaps = 26/274 (9%)
Query: 752 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 811
NK +NRY +V +DHSR+ L D +DYINA+ +Y+ TQGPL T G F
Sbjct: 40 NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTCGHF 95
Query: 812 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 865
W MVWE +S +VM+ ++ E+ +KC QYWP + +T +T+ +D++ + Y
Sbjct: 96 WEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIK--SYY 153
Query: 866 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 925
+R + E REI +T WPD GVPE PA FL FL +VR ES +
Sbjct: 154 TVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSL 204
Query: 926 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 982
+ GP++VHCSAG+GR+G F + D ++++ K +VDI + +R R ++QT
Sbjct: 205 SPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLDMRKFRMGLIQTA 264
Query: 983 DQYMFIHDALLEAV--LCGNTEIPASSQMITRKD 1014
DQ F + A++E + G++ + + ++ +D
Sbjct: 265 DQLRFSYLAVIEGAKFIMGDSSVQDQWKELSHED 298
Score = 170 bits (431), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 94/254 (37%), Positives = 140/254 (55%), Gaps = 24/254 (9%)
Query: 241 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 300
NK +NRY +V +DHSR+ L D +DYINA+ +Y+ TQGPL T G F
Sbjct: 40 NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTCGHF 95
Query: 301 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 354
W MVWE +S +VM+ ++ E+ +KC QYWP + +T +T+ +D++ + Y
Sbjct: 96 WEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIK--SYY 153
Query: 355 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 414
+R + E REI +T WPD GVPE PA FL FL +VR ES +
Sbjct: 154 TVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSL 204
Query: 415 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 471
+ GP++VHCSAG+GR+G F + D ++++ K +VDI + +R R ++QT
Sbjct: 205 SPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLDMRKFRMGLIQTA 264
Query: 472 DQYMFIHDALLEAV 485
DQ F + A++E
Sbjct: 265 DQLRFSYLAVIEGA 278
Score = 100 bits (248), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 93/199 (46%), Gaps = 40/199 (20%)
Query: 1304 NIRAEPSRFIS--ASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFIDGYRL 1361
+IR E S F A LP NK++NR + P + SR+ L E +DYINAS I
Sbjct: 22 DIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ----EDNDYINASLIKMEEA 77
Query: 1362 RSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------------- 1402
+ +YI TQGPL +T FW M+WE S VVML ++ E G
Sbjct: 78 QRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFED 137
Query: 1403 ---------------YVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQ 1447
Y +R+ ++ + +R + F WP+ GVP+S F++F+ +
Sbjct: 138 TNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFK 197
Query: 1448 VHKTKEQFGQDGPITVHCS 1466
V ++ + GP+ VHCS
Sbjct: 198 VRESGSLSPEHGPVVVHCS 216
Score = 77.0 bits (188), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 78/148 (52%), Gaps = 15/148 (10%)
Query: 1505 KCHQYWP--SERSIRYE------WFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQ 1556
KC QYWP E+ + +E + E I Y Y +R+ ++ + +R + F
Sbjct: 120 KCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSY----YTVRQLELENLTTQETREILHFH 175
Query: 1557 LIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVL 1613
WP+ GVP+S F++F+ +V ++ + GP+ VHCSAG+GR+G F T +++
Sbjct: 176 YTTWPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLM 235
Query: 1614 ERMQYEGVIDLFQTVRILRTQRPAMVQT 1641
++ + +D+ + + +R R ++QT
Sbjct: 236 DKRKDPSSVDIKKVLLDMRKFRMGLIQT 263
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 112/262 (42%), Gaps = 45/262 (17%)
Query: 516 MELEFKKLS----------NIRAEPSRFIS--ASLPCNKHKNRLVHILPVESSRVCLTPV 563
ME EF+++ +IR E S F A LP NK++NR + P + SR+ L
Sbjct: 3 MEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQE 62
Query: 564 RGDGFID--FIGQVHKTKEQFGQDGPITVHCSRLAQHIENLKANDNLKFSQEYE--SIEP 619
D +I+ I + GP+ C + + K+ + ++ E S++
Sbjct: 63 DND-YINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKC 121
Query: 620 GQQFTWDHSSMEMNKAKNRYANVIAYD------------------HSRVIL-----STVD 656
Q + + + N +I+ D +R IL + D
Sbjct: 122 AQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHYTTWPD 181
Query: 657 -GIPGRDG-FIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVLERMQYE 711
G+P F++F+ +V ++ + GP+ VHCSAG+GR+G F T +++++ +
Sbjct: 182 FGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDP 241
Query: 712 GVIDLFQTVRILRTQRPAMVQT 733
+D+ + + +R R ++QT
Sbjct: 242 SSVDIKKVLLDMRKFRMGLIQT 263
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 1711 LLFILKSSLESSGVNLPVGPLIVHCSAGVGRTGCFIVID 1749
L F+ K ES ++ GP++VHCSAG+GR+G F + D
Sbjct: 192 LNFLFKVR-ESGSLSPEHGPVVVHCSAGIGRSGTFCLAD 229
>pdb|3SME|A Chain A, Structure Of Ptp1b Inactivated By H2o2BICARBONATE
Length = 300
Score = 171 bits (434), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 150/274 (54%), Gaps = 26/274 (9%)
Query: 752 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 811
NK +NRY +V +DHSR+ L D +DYINA+ +Y+ TQGPL T G F
Sbjct: 42 NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTCGHF 97
Query: 812 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 865
W MVWE +S +VM+ ++ E+ +KC QYWP + +T +T+ +D++ + Y
Sbjct: 98 WEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIK--SYY 155
Query: 866 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 925
+R + E REI +T WPD GVPE PA FL FL +VR ES +
Sbjct: 156 TVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSL 206
Query: 926 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 982
+ GP++VHCSAG+GR+G F + D ++++ K +VDI + +R R ++QT
Sbjct: 207 SPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTA 266
Query: 983 DQYMFIHDALLEAV--LCGNTEIPASSQMITRKD 1014
DQ F + A++E + G++ + + ++ +D
Sbjct: 267 DQLRFSYLAVIEGAKFIMGDSSVQDQWKELSHED 300
Score = 170 bits (431), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 94/254 (37%), Positives = 140/254 (55%), Gaps = 24/254 (9%)
Query: 241 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 300
NK +NRY +V +DHSR+ L D +DYINA+ +Y+ TQGPL T G F
Sbjct: 42 NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTCGHF 97
Query: 301 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 354
W MVWE +S +VM+ ++ E+ +KC QYWP + +T +T+ +D++ + Y
Sbjct: 98 WEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIK--SYY 155
Query: 355 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 414
+R + E REI +T WPD GVPE PA FL FL +VR ES +
Sbjct: 156 TVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSL 206
Query: 415 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 471
+ GP++VHCSAG+GR+G F + D ++++ K +VDI + +R R ++QT
Sbjct: 207 SPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTA 266
Query: 472 DQYMFIHDALLEAV 485
DQ F + A++E
Sbjct: 267 DQLRFSYLAVIEGA 280
Score = 100 bits (249), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 93/199 (46%), Gaps = 40/199 (20%)
Query: 1304 NIRAEPSRFIS--ASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFIDGYRL 1361
+IR E S F A LP NK++NR + P + SR+ L E +DYINAS I
Sbjct: 24 DIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ----EDNDYINASLIKMEEA 79
Query: 1362 RSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------------- 1402
+ +YI TQGPL +T FW M+WE S VVML ++ E G
Sbjct: 80 QRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFED 139
Query: 1403 ---------------YVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQ 1447
Y +R+ ++ + +R + F WP+ GVP+S F++F+ +
Sbjct: 140 TNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFK 199
Query: 1448 VHKTKEQFGQDGPITVHCS 1466
V ++ + GP+ VHCS
Sbjct: 200 VRESGSLSPEHGPVVVHCS 218
Score = 77.0 bits (188), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 78/148 (52%), Gaps = 15/148 (10%)
Query: 1505 KCHQYWP--SERSIRYE------WFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQ 1556
KC QYWP E+ + +E + E I Y Y +R+ ++ + +R + F
Sbjct: 122 KCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSY----YTVRQLELENLTTQETREILHFH 177
Query: 1557 LIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVL 1613
WP+ GVP+S F++F+ +V ++ + GP+ VHCSAG+GR+G F T +++
Sbjct: 178 YTTWPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLM 237
Query: 1614 ERMQYEGVIDLFQTVRILRTQRPAMVQT 1641
++ + +D+ + + +R R ++QT
Sbjct: 238 DKRKDPSSVDIKKVLLEMRKFRMGLIQT 265
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 112/262 (42%), Gaps = 45/262 (17%)
Query: 516 MELEFKKLS----------NIRAEPSRFIS--ASLPCNKHKNRLVHILPVESSRVCLTPV 563
ME EF+++ +IR E S F A LP NK++NR + P + SR+ L
Sbjct: 5 MEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQE 64
Query: 564 RGDGFID--FIGQVHKTKEQFGQDGPITVHCSRLAQHIENLKANDNLKFSQEYE--SIEP 619
D +I+ I + GP+ C + + K+ + ++ E S++
Sbjct: 65 DND-YINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKC 123
Query: 620 GQQFTWDHSSMEMNKAKNRYANVIAYD------------------HSRVIL-----STVD 656
Q + + + N +I+ D +R IL + D
Sbjct: 124 AQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHYTTWPD 183
Query: 657 -GIPGR-DGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVLERMQYE 711
G+P F++F+ +V ++ + GP+ VHCSAG+GR+G F T +++++ +
Sbjct: 184 FGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDP 243
Query: 712 GVIDLFQTVRILRTQRPAMVQT 733
+D+ + + +R R ++QT
Sbjct: 244 SSVDIKKVLLEMRKFRMGLIQT 265
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 1711 LLFILKSSLESSGVNLPVGPLIVHCSAGVGRTGCFIVID 1749
L F+ K ES ++ GP++VHCSAG+GR+G F + D
Sbjct: 194 LNFLFKVR-ESGSLSPEHGPVVVHCSAGIGRSGTFCLAD 231
>pdb|2FJM|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 2
pdb|2FJM|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 2
Length = 310
Score = 171 bits (434), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 150/274 (54%), Gaps = 26/274 (9%)
Query: 752 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 811
NK +NRY +V +DHSR+ L D +DYINA+ +Y+ TQGPL T G F
Sbjct: 52 NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTCGHF 107
Query: 812 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 865
W MVWE +S +VM+ ++ E+ +KC QYWP + +T +T+ +D++ + Y
Sbjct: 108 WEMVWEQKSRGVVMLNRVMEKGSVKCAQYWPQKEEKEMIFEDTNLKLTLISEDIK--SYY 165
Query: 866 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 925
+R + E REI +T WPD GVPE PA FL FL +VR ES +
Sbjct: 166 TVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSL 216
Query: 926 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 982
+ GP++VHCSAG+GR+G F + D ++++ K +VDI + +R R ++QT
Sbjct: 217 SPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTA 276
Query: 983 DQYMFIHDALLEAV--LCGNTEIPASSQMITRKD 1014
DQ F + A++E + G++ + + ++ +D
Sbjct: 277 DQLRFSYLAVIEGAKFIMGDSSVQDQWKELSHED 310
Score = 170 bits (431), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 94/254 (37%), Positives = 140/254 (55%), Gaps = 24/254 (9%)
Query: 241 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 300
NK +NRY +V +DHSR+ L D +DYINA+ +Y+ TQGPL T G F
Sbjct: 52 NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTCGHF 107
Query: 301 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 354
W MVWE +S +VM+ ++ E+ +KC QYWP + +T +T+ +D++ + Y
Sbjct: 108 WEMVWEQKSRGVVMLNRVMEKGSVKCAQYWPQKEEKEMIFEDTNLKLTLISEDIK--SYY 165
Query: 355 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 414
+R + E REI +T WPD GVPE PA FL FL +VR ES +
Sbjct: 166 TVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSL 216
Query: 415 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 471
+ GP++VHCSAG+GR+G F + D ++++ K +VDI + +R R ++QT
Sbjct: 217 SPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTA 276
Query: 472 DQYMFIHDALLEAV 485
DQ F + A++E
Sbjct: 277 DQLRFSYLAVIEGA 290
Score = 100 bits (248), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 93/199 (46%), Gaps = 40/199 (20%)
Query: 1304 NIRAEPSRFIS--ASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFIDGYRL 1361
+IR E S F A LP NK++NR + P + SR+ L E +DYINAS I
Sbjct: 34 DIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ----EDNDYINASLIKMEEA 89
Query: 1362 RSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------------- 1402
+ +YI TQGPL +T FW M+WE S VVML ++ E G
Sbjct: 90 QRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSVKCAQYWPQKEEKEMIFED 149
Query: 1403 ---------------YVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQ 1447
Y +R+ ++ + +R + F WP+ GVP+S F++F+ +
Sbjct: 150 TNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFK 209
Query: 1448 VHKTKEQFGQDGPITVHCS 1466
V ++ + GP+ VHCS
Sbjct: 210 VRESGSLSPEHGPVVVHCS 228
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 78/148 (52%), Gaps = 15/148 (10%)
Query: 1505 KCHQYWP--SERSIRYE------WFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQ 1556
KC QYWP E+ + +E + E I Y Y +R+ ++ + +R + F
Sbjct: 132 KCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSY----YTVRQLELENLTTQETREILHFH 187
Query: 1557 LIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVL 1613
WP+ GVP+S F++F+ +V ++ + GP+ VHCSAG+GR+G F T +++
Sbjct: 188 YTTWPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLM 247
Query: 1614 ERMQYEGVIDLFQTVRILRTQRPAMVQT 1641
++ + +D+ + + +R R ++QT
Sbjct: 248 DKRKDPSSVDIKKVLLEMRKFRMGLIQT 275
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 105/243 (43%), Gaps = 35/243 (14%)
Query: 525 NIRAEPSRFIS--ASLPCNKHKNRLVHILPVESSRVCLTPVRGDGFID--FIGQVHKTKE 580
+IR E S F A LP NK++NR + P + SR+ L D +I+ I +
Sbjct: 34 DIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQEDND-YINASLIKMEEAQRS 92
Query: 581 QFGQDGPITVHCSRLAQHIENLKANDNLKFSQEYE--SIEPGQQFTWDHSSMEMNKAKNR 638
GP+ C + + K+ + ++ E S++ Q + + + N
Sbjct: 93 YILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSVKCAQYWPQKEEKEMIFEDTNL 152
Query: 639 YANVIAYD------------------HSRVIL-----STVD-GIPGRDG-FIDFIGQVHK 673
+I+ D +R IL + D G+P F++F+ +V +
Sbjct: 153 KLTLISEDIKSYYTVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRE 212
Query: 674 TKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVLERMQYEGVIDLFQTVRILRTQRPAM 730
+ + GP+ VHCSAG+GR+G F T +++++ + +D+ + + +R R +
Sbjct: 213 SGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGL 272
Query: 731 VQT 733
+QT
Sbjct: 273 IQT 275
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 1711 LLFILKSSLESSGVNLPVGPLIVHCSAGVGRTGCFIVID 1749
L F+ K ES ++ GP++VHCSAG+GR+G F + D
Sbjct: 204 LNFLFKVR-ESGSLSPEHGPVVVHCSAGIGRSGTFCLAD 241
>pdb|1Q6J|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 2
pdb|1Q6M|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 3
pdb|1Q6N|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 4
pdb|1Q6N|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 4
pdb|1Q6P|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 6
pdb|1Q6P|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 6
pdb|1Q6S|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 9
pdb|1Q6S|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 9
pdb|1Q6T|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 11
pdb|1Q6T|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 11
pdb|2FJN|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 2
pdb|2FJN|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 2
Length = 310
Score = 171 bits (433), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 150/274 (54%), Gaps = 26/274 (9%)
Query: 752 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 811
NK +NRY +V +DHSR+ L D +DYINA+ +Y+ TQGPL T G F
Sbjct: 52 NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTCGHF 107
Query: 812 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 865
W MVWE +S +VM+ ++ E+ +KC QYWP + +T +T+ +D++ + Y
Sbjct: 108 WEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIK--SYY 165
Query: 866 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 925
+R + E REI +T WPD GVPE PA FL FL +VR ES +
Sbjct: 166 TVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSL 216
Query: 926 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 982
+ GP++VHCSAG+GR+G F + D ++++ K +VDI + +R R ++QT
Sbjct: 217 SPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTA 276
Query: 983 DQYMFIHDALLEAV--LCGNTEIPASSQMITRKD 1014
DQ F + A++E + G++ + + ++ +D
Sbjct: 277 DQLRFSYLAVIEGAKFIMGDSSVQDQWKELSHED 310
Score = 170 bits (431), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 94/254 (37%), Positives = 140/254 (55%), Gaps = 24/254 (9%)
Query: 241 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 300
NK +NRY +V +DHSR+ L D +DYINA+ +Y+ TQGPL T G F
Sbjct: 52 NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTCGHF 107
Query: 301 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 354
W MVWE +S +VM+ ++ E+ +KC QYWP + +T +T+ +D++ + Y
Sbjct: 108 WEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIK--SYY 165
Query: 355 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 414
+R + E REI +T WPD GVPE PA FL FL +VR ES +
Sbjct: 166 TVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSL 216
Query: 415 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 471
+ GP++VHCSAG+GR+G F + D ++++ K +VDI + +R R ++QT
Sbjct: 217 SPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTA 276
Query: 472 DQYMFIHDALLEAV 485
DQ F + A++E
Sbjct: 277 DQLRFSYLAVIEGA 290
Score = 100 bits (248), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 93/199 (46%), Gaps = 40/199 (20%)
Query: 1304 NIRAEPSRFIS--ASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFIDGYRL 1361
+IR E S F A LP NK++NR + P + SR+ L E +DYINAS I
Sbjct: 34 DIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ----EDNDYINASLIKMEEA 89
Query: 1362 RSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------------- 1402
+ +YI TQGPL +T FW M+WE S VVML ++ E G
Sbjct: 90 QRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFED 149
Query: 1403 ---------------YVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQ 1447
Y +R+ ++ + +R + F WP+ GVP+S F++F+ +
Sbjct: 150 TNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFK 209
Query: 1448 VHKTKEQFGQDGPITVHCS 1466
V ++ + GP+ VHCS
Sbjct: 210 VRESGSLSPEHGPVVVHCS 228
Score = 77.0 bits (188), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 78/148 (52%), Gaps = 15/148 (10%)
Query: 1505 KCHQYWP--SERSIRYE------WFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQ 1556
KC QYWP E+ + +E + E I Y Y +R+ ++ + +R + F
Sbjct: 132 KCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSY----YTVRQLELENLTTQETREILHFH 187
Query: 1557 LIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVL 1613
WP+ GVP+S F++F+ +V ++ + GP+ VHCSAG+GR+G F T +++
Sbjct: 188 YTTWPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLM 247
Query: 1614 ERMQYEGVIDLFQTVRILRTQRPAMVQT 1641
++ + +D+ + + +R R ++QT
Sbjct: 248 DKRKDPSSVDIKKVLLEMRKFRMGLIQT 275
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 105/243 (43%), Gaps = 35/243 (14%)
Query: 525 NIRAEPSRFIS--ASLPCNKHKNRLVHILPVESSRVCLTPVRGDGFID--FIGQVHKTKE 580
+IR E S F A LP NK++NR + P + SR+ L D +I+ I +
Sbjct: 34 DIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQEDND-YINASLIKMEEAQRS 92
Query: 581 QFGQDGPITVHCSRLAQHIENLKANDNLKFSQEYE--SIEPGQQFTWDHSSMEMNKAKNR 638
GP+ C + + K+ + ++ E S++ Q + + + N
Sbjct: 93 YILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNL 152
Query: 639 YANVIAYD------------------HSRVIL-----STVD-GIPGRDG-FIDFIGQVHK 673
+I+ D +R IL + D G+P F++F+ +V +
Sbjct: 153 KLTLISEDIKSYYTVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRE 212
Query: 674 TKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVLERMQYEGVIDLFQTVRILRTQRPAM 730
+ + GP+ VHCSAG+GR+G F T +++++ + +D+ + + +R R +
Sbjct: 213 SGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGL 272
Query: 731 VQT 733
+QT
Sbjct: 273 IQT 275
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 1711 LLFILKSSLESSGVNLPVGPLIVHCSAGVGRTGCFIVID 1749
L F+ K ES ++ GP++VHCSAG+GR+G F + D
Sbjct: 204 LNFLFKVR-ESGSLSPEHGPVVVHCSAGIGRSGTFCLAD 241
>pdb|1L8G|A Chain A, Crystal Structure Of Ptp1b Complexed With 7-(1,1-dioxo-1h-
Benzo[d]isothiazol-3-yloxymethyl)-2-(oxalyl-amino)-4,7-
Dihydro-5h-thieno[2,3-c]pyran-3-carboxylic Acid
Length = 321
Score = 171 bits (433), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 149/274 (54%), Gaps = 26/274 (9%)
Query: 752 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 811
NK +NRY +V +DHSR+ L D +DYINA+ +Y+ TQGPL T G F
Sbjct: 40 NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTCGHF 95
Query: 812 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 865
W MVWE +S +VM+ ++ E+ +KC QYWP + +T +T+ +D++ Y
Sbjct: 96 WEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIK--TYY 153
Query: 866 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 925
+R + E REI +T WPD GVPE PA FL FL +VR ES +
Sbjct: 154 TVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSL 204
Query: 926 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 982
+ GP++VHCSAG+GR+G F + D ++++ K +VDI + +R R ++QT
Sbjct: 205 SPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLDMRKFRMGLIQTA 264
Query: 983 DQYMFIHDALLEAV--LCGNTEIPASSQMITRKD 1014
DQ F + A++E + G++ + + ++ +D
Sbjct: 265 DQLRFSYLAVIEGAKFIMGDSSVQDQWKELSHED 298
Score = 170 bits (431), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 94/254 (37%), Positives = 139/254 (54%), Gaps = 24/254 (9%)
Query: 241 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 300
NK +NRY +V +DHSR+ L D +DYINA+ +Y+ TQGPL T G F
Sbjct: 40 NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTCGHF 95
Query: 301 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 354
W MVWE +S +VM+ ++ E+ +KC QYWP + +T +T+ +D++ Y
Sbjct: 96 WEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIK--TYY 153
Query: 355 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 414
+R + E REI +T WPD GVPE PA FL FL +VR ES +
Sbjct: 154 TVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSL 204
Query: 415 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 471
+ GP++VHCSAG+GR+G F + D ++++ K +VDI + +R R ++QT
Sbjct: 205 SPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLDMRKFRMGLIQTA 264
Query: 472 DQYMFIHDALLEAV 485
DQ F + A++E
Sbjct: 265 DQLRFSYLAVIEGA 278
Score = 100 bits (249), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 93/199 (46%), Gaps = 40/199 (20%)
Query: 1304 NIRAEPSRFIS--ASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFIDGYRL 1361
+IR E S F A LP NK++NR + P + SR+ L E +DYINAS I
Sbjct: 22 DIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ----EDNDYINASLIKMEEA 77
Query: 1362 RSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------------- 1402
+ +YI TQGPL +T FW M+WE S VVML ++ E G
Sbjct: 78 QRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFED 137
Query: 1403 ---------------YVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQ 1447
Y +R+ ++ + +R + F WP+ GVP+S F++F+ +
Sbjct: 138 TNLKLTLISEDIKTYYTVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFK 197
Query: 1448 VHKTKEQFGQDGPITVHCS 1466
V ++ + GP+ VHCS
Sbjct: 198 VRESGSLSPEHGPVVVHCS 216
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 78/148 (52%), Gaps = 15/148 (10%)
Query: 1505 KCHQYWP--SERSIRYE------WFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQ 1556
KC QYWP E+ + +E + E I Y Y +R+ ++ + +R + F
Sbjct: 120 KCAQYWPQKEEKEMIFEDTNLKLTLISEDIKTY----YTVRQLELENLTTQETREILHFH 175
Query: 1557 LIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVL 1613
WP+ GVP+S F++F+ +V ++ + GP+ VHCSAG+GR+G F T +++
Sbjct: 176 YTTWPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLM 235
Query: 1614 ERMQYEGVIDLFQTVRILRTQRPAMVQT 1641
++ + +D+ + + +R R ++QT
Sbjct: 236 DKRKDPSSVDIKKVLLDMRKFRMGLIQT 263
Score = 50.4 bits (119), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 112/262 (42%), Gaps = 45/262 (17%)
Query: 516 MELEFKKLS----------NIRAEPSRFIS--ASLPCNKHKNRLVHILPVESSRVCLTPV 563
ME EF+++ +IR E S F A LP NK++NR + P + SR+ L
Sbjct: 3 MEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQE 62
Query: 564 RGDGFID--FIGQVHKTKEQFGQDGPITVHCSRLAQHIENLKANDNLKFSQEYE--SIEP 619
D +I+ I + GP+ C + + K+ + ++ E S++
Sbjct: 63 DND-YINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKC 121
Query: 620 GQQFTWDHSSMEMNKAKNRYANVIAYD------------------HSRVIL-----STVD 656
Q + + + N +I+ D +R IL + D
Sbjct: 122 AQYWPQKEEKEMIFEDTNLKLTLISEDIKTYYTVRQLELENLTTQETREILHFHYTTWPD 181
Query: 657 -GIPGRDG-FIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVLERMQYE 711
G+P F++F+ +V ++ + GP+ VHCSAG+GR+G F T +++++ +
Sbjct: 182 FGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDP 241
Query: 712 GVIDLFQTVRILRTQRPAMVQT 733
+D+ + + +R R ++QT
Sbjct: 242 SSVDIKKVLLDMRKFRMGLIQT 263
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 1711 LLFILKSSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDA 1750
L F+ K ES ++ GP++VHCSAG+GR+G F + D
Sbjct: 192 LNFLFKVR-ESGSLSPEHGPVVVHCSAGIGRSGTFCLADT 230
>pdb|1ECV|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 5-Iodo-2-(Oxalyl-Amino)-Benzoic Acid
pdb|1C83|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 6-(Oxalyl-Amino)-1h-Indole-5-Carboxylic
Acid
pdb|1C84|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 3-(Oxalyl-Amino)-Naphthalene-2-Carboxlic
Acid
pdb|1C85|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 2-(Oxalyl-Amino)-Benzoic Acid
pdb|1C87|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 2-(Oxalyl-Amino-4,7-Dihydro-5h-Thieno[2,3-
C]pyran-3-Carboxylic Acid
pdb|1C88|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 2-(Oxalyl-Amino)-4,5,6,7-Tetrahydro-
Thieno[2,3-C]pyridine-3-Carboxylic Acid
Length = 298
Score = 171 bits (432), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 149/274 (54%), Gaps = 26/274 (9%)
Query: 752 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 811
NK +NRY +V +DHSR+ L D +DYINA+ +Y+ TQGPL T G F
Sbjct: 40 NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTCGHF 95
Query: 812 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 865
W MVWE +S +VM+ ++ E+ +KC QYWP + +T +T+ +D++ Y
Sbjct: 96 WEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIK--TYY 153
Query: 866 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 925
+R + E REI +T WPD GVPE PA FL FL +VR ES +
Sbjct: 154 TVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSL 204
Query: 926 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 982
+ GP++VHCSAG+GR+G F + D ++++ K +VDI + +R R ++QT
Sbjct: 205 SPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLDMRKFRMGLIQTA 264
Query: 983 DQYMFIHDALLEAV--LCGNTEIPASSQMITRKD 1014
DQ F + A++E + G++ + + ++ +D
Sbjct: 265 DQLRFSYLAVIEGAKFIMGDSSVQDQWKELSHED 298
Score = 170 bits (430), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 94/254 (37%), Positives = 139/254 (54%), Gaps = 24/254 (9%)
Query: 241 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 300
NK +NRY +V +DHSR+ L D +DYINA+ +Y+ TQGPL T G F
Sbjct: 40 NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTCGHF 95
Query: 301 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 354
W MVWE +S +VM+ ++ E+ +KC QYWP + +T +T+ +D++ Y
Sbjct: 96 WEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIK--TYY 153
Query: 355 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 414
+R + E REI +T WPD GVPE PA FL FL +VR ES +
Sbjct: 154 TVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSL 204
Query: 415 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 471
+ GP++VHCSAG+GR+G F + D ++++ K +VDI + +R R ++QT
Sbjct: 205 SPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLDMRKFRMGLIQTA 264
Query: 472 DQYMFIHDALLEAV 485
DQ F + A++E
Sbjct: 265 DQLRFSYLAVIEGA 278
Score = 100 bits (248), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 93/199 (46%), Gaps = 40/199 (20%)
Query: 1304 NIRAEPSRFIS--ASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFIDGYRL 1361
+IR E S F A LP NK++NR + P + SR+ L E +DYINAS I
Sbjct: 22 DIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ----EDNDYINASLIKMEEA 77
Query: 1362 RSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------------- 1402
+ +YI TQGPL +T FW M+WE S VVML ++ E G
Sbjct: 78 QRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFED 137
Query: 1403 ---------------YVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQ 1447
Y +R+ ++ + +R + F WP+ GVP+S F++F+ +
Sbjct: 138 TNLKLTLISEDIKTYYTVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFK 197
Query: 1448 VHKTKEQFGQDGPITVHCS 1466
V ++ + GP+ VHCS
Sbjct: 198 VRESGSLSPEHGPVVVHCS 216
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 78/148 (52%), Gaps = 15/148 (10%)
Query: 1505 KCHQYWP--SERSIRYE------WFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQ 1556
KC QYWP E+ + +E + E I Y Y +R+ ++ + +R + F
Sbjct: 120 KCAQYWPQKEEKEMIFEDTNLKLTLISEDIKTY----YTVRQLELENLTTQETREILHFH 175
Query: 1557 LIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVL 1613
WP+ GVP+S F++F+ +V ++ + GP+ VHCSAG+GR+G F T +++
Sbjct: 176 YTTWPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLM 235
Query: 1614 ERMQYEGVIDLFQTVRILRTQRPAMVQT 1641
++ + +D+ + + +R R ++QT
Sbjct: 236 DKRKDPSSVDIKKVLLDMRKFRMGLIQT 263
Score = 50.4 bits (119), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 112/262 (42%), Gaps = 45/262 (17%)
Query: 516 MELEFKKLS----------NIRAEPSRFIS--ASLPCNKHKNRLVHILPVESSRVCLTPV 563
ME EF+++ +IR E S F A LP NK++NR + P + SR+ L
Sbjct: 3 MEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQE 62
Query: 564 RGDGFID--FIGQVHKTKEQFGQDGPITVHCSRLAQHIENLKANDNLKFSQEYE--SIEP 619
D +I+ I + GP+ C + + K+ + ++ E S++
Sbjct: 63 DND-YINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKC 121
Query: 620 GQQFTWDHSSMEMNKAKNRYANVIAYD------------------HSRVIL-----STVD 656
Q + + + N +I+ D +R IL + D
Sbjct: 122 AQYWPQKEEKEMIFEDTNLKLTLISEDIKTYYTVRQLELENLTTQETREILHFHYTTWPD 181
Query: 657 -GIPGRDG-FIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVLERMQYE 711
G+P F++F+ +V ++ + GP+ VHCSAG+GR+G F T +++++ +
Sbjct: 182 FGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDP 241
Query: 712 GVIDLFQTVRILRTQRPAMVQT 733
+D+ + + +R R ++QT
Sbjct: 242 SSVDIKKVLLDMRKFRMGLIQT 263
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 1711 LLFILKSSLESSGVNLPVGPLIVHCSAGVGRTGCFIVID 1749
L F+ K ES ++ GP++VHCSAG+GR+G F + D
Sbjct: 192 LNFLFKVR-ESGSLSPEHGPVVVHCSAGIGRSGTFCLAD 229
>pdb|1L8K|A Chain A, T Cell Protein-Tyrosine Phosphatase Structure
Length = 314
Score = 170 bits (431), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 92/270 (34%), Positives = 145/270 (53%), Gaps = 22/270 (8%)
Query: 752 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 811
N+ +NRY +V YDHSRV L + +DYINA+ D +Y+ TQGPL T F
Sbjct: 42 NRNRNRYRDVSPYDHSRVKLQNAE----NDYINASLVDIEEAQRSYILTQGPLPNTCCHF 97
Query: 812 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG-----TETYGHITVTLQDVQELASYC 866
W MVW+ ++ +VM+ ++ E+ +KC QYWP+ ET + + +DV+ + Y
Sbjct: 98 WLMVWQQKTKAVVMLNRIVEKESVKCAQYWPTDDQEMLFKETGFSVKLLSEDVK--SYYT 155
Query: 867 IRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVN 926
+ + E R I +T WPD GVPE PA FL FL +VR ES +N
Sbjct: 156 VHLLQLENINSGETRTISHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSLN 206
Query: 927 LPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYM 986
GP ++HCSAG+GR+G F ++D + ++ ++I + +R R ++QT DQ
Sbjct: 207 PDHGPAVIHCSAGIGRSGTFSLVDTCLVLMEKGDDINIKQVLLNMRKYRMGLIQTPDQLR 266
Query: 987 FIHDALLEAVLC--GNTEIPASSQMITRKD 1014
F + A++E C G++ I + ++++D
Sbjct: 267 FSYMAIIEGAKCIKGDSSIQKRWKELSKED 296
Score = 169 bits (429), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/262 (35%), Positives = 140/262 (53%), Gaps = 22/262 (8%)
Query: 241 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 300
N+ +NRY +V YDHSRV L + +DYINA+ D +Y+ TQGPL T F
Sbjct: 42 NRNRNRYRDVSPYDHSRVKLQNAE----NDYINASLVDIEEAQRSYILTQGPLPNTCCHF 97
Query: 301 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG-----TETYGHITVTLQDVQELASYC 355
W MVW+ ++ +VM+ ++ E+ +KC QYWP+ ET + + +DV+ + Y
Sbjct: 98 WLMVWQQKTKAVVMLNRIVEKESVKCAQYWPTDDQEMLFKETGFSVKLLSEDVK--SYYT 155
Query: 356 IRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVN 415
+ + E R I +T WPD GVPE PA FL FL +VR ES +N
Sbjct: 156 VHLLQLENINSGETRTISHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSLN 206
Query: 416 LPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYM 475
GP ++HCSAG+GR+G F ++D + ++ ++I + +R R ++QT DQ
Sbjct: 207 PDHGPAVIHCSAGIGRSGTFSLVDTCLVLMEKGDDINIKQVLLNMRKYRMGLIQTPDQLR 266
Query: 476 FIHDALLEAVLC--GNTEIPAR 495
F + A++E C G++ I R
Sbjct: 267 FSYMAIIEGAKCIKGDSSIQKR 288
Score = 90.1 bits (222), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 84/185 (45%), Gaps = 37/185 (20%)
Query: 1315 ASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFIDGYRLRSAYIATQGPLAD 1374
A P N+++NR + P + SRV L +DYINAS +D + +YI TQGPL +
Sbjct: 37 AKFPENRNRNRYRDVSPYDHSRVKLQNAE----NDYINASLVDIEEAQRSYILTQGPLPN 92
Query: 1375 TTEDFWRMLWEHNSTIVVMLTKL---------------------KEMG------------ 1401
T FW M+W+ + VVML ++ KE G
Sbjct: 93 TCCHFWLMVWQQKTKAVVMLNRIVEKESVKCAQYWPTDDQEMLFKETGFSVKLLSEDVKS 152
Query: 1402 RYVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPI 1461
Y + ++ + +RT+ F WP+ GVP+S F++F+ +V ++ GP
Sbjct: 153 YYTVHLLQLENINSGETRTISHFHYTTWPDFGVPESPASFLNFLFKVRESGSLNPDHGPA 212
Query: 1462 TVHCS 1466
+HCS
Sbjct: 213 VIHCS 217
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 77/152 (50%), Gaps = 3/152 (1%)
Query: 1493 VLIAYLVLFSQEKCHQYWPS---ERSIRYEWFVVEPIAEYNMPQYVLREFKVTDARDATS 1549
V++ +V KC QYWP+ E + F V+ ++E Y + ++ + +
Sbjct: 110 VMLNRIVEKESVKCAQYWPTDDQEMLFKETGFSVKLLSEDVKSYYTVHLLQLENINSGET 169
Query: 1550 RTLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITL 1609
RT+ F WP+ GVP+S F++F+ +V ++ GP +HCSAG+GR+G F +
Sbjct: 170 RTISHFHYTTWPDFGVPESPASFLNFLFKVRESGSLNPDHGPAVIHCSAGIGRSGTFSLV 229
Query: 1610 SIVLERMQYEGVIDLFQTVRILRTQRPAMVQT 1641
L M+ I++ Q + +R R ++QT
Sbjct: 230 DTCLVLMEKGDDINIKQVLLNMRKYRMGLIQT 261
Score = 50.4 bits (119), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 92/225 (40%), Gaps = 27/225 (12%)
Query: 536 ASLPCNKHKNRLVHILPVESSRVCLTPVRGDGFIDFIGQVHKTKEQF-GQDGPITVHCSR 594
A P N+++NR + P + SRV L D + + + + + GP+ C
Sbjct: 37 AKFPENRNRNRYRDVSPYDHSRVKLQNAENDYINASLVDIEEAQRSYILTQGPLPNTCCH 96
Query: 595 LAQHI--ENLKANDNLKFSQEYESIEPGQQFTWDHSSMEMNKA----KNRYANVIAYDHS 648
+ + KA L E ES++ Q + D M + K +V +Y
Sbjct: 97 FWLMVWQQKTKAVVMLNRIVEKESVKCAQYWPTDDQEMLFKETGFSVKLLSEDVKSYYTV 156
Query: 649 RVI-LSTVD------------------GIPGRDG-FIDFIGQVHKTKEQFGQDGPITVHC 688
++ L ++ G+P F++F+ +V ++ GP +HC
Sbjct: 157 HLLQLENINSGETRTISHFHYTTWPDFGVPESPASFLNFLFKVRESGSLNPDHGPAVIHC 216
Query: 689 SAGVGRTGVFITLSIVLERMQYEGVIDLFQTVRILRTQRPAMVQT 733
SAG+GR+G F + L M+ I++ Q + +R R ++QT
Sbjct: 217 SAGIGRSGTFSLVDTCLVLMEKGDDINIKQVLLNMRKYRMGLIQT 261
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 1711 LLFILKSSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDA 1750
L F+ K ES +N GP ++HCSAG+GR+G F ++D
Sbjct: 193 LNFLFKVR-ESGSLNPDHGPAVIHCSAGIGRSGTFSLVDT 231
>pdb|3O5X|A Chain A, Crystal Structure Of The Oncogenic Tyrosine Phosphatase
Shp2 Complexed With A Salicylic Acid-Based Small
Molecule Inhibitor
pdb|3MOW|A Chain A, Crystal Structure Of Shp2 In Complex With A Tautomycetin
Analog Ttn D- 1
Length = 276
Score = 170 bits (431), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 107/257 (41%), Positives = 148/257 (57%), Gaps = 27/257 (10%)
Query: 241 NKAKNRYANVIAYDHSRVILSTVD-GIPGSDYINANY--------CDGYRKHNAYVATQG 291
NK KNRY N++ +DH+RV+L D P SDYINAN C+ + +Y+ATQG
Sbjct: 13 NKNKNRYKNILPFDHTRVVLHDGDPNEPVSDYINANIIMPEFETKCNNSKPKKSYIATQG 72
Query: 292 PLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSR-GTETYGHITVTLQDVQE 350
LQ T+ DFWRMV++ S IVM TK ER + KC +YWP + YG + +++V+E
Sbjct: 73 CLQNTVNDFWRMVFQENSRVIVMTTKEVERGKSKCVKYWPDEYALKEYG--VMRVRNVKE 130
Query: 351 LAS--YCIRTFMINK-GADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTN 407
A+ Y +R ++K G + R + Q F WPDHGVP P L FL V
Sbjct: 131 SAAHDYTLRELKLSKVGQGNTERTVWQYHFRTWPDHGVPSDPGGVLDFLEEVHHKQESI- 189
Query: 408 SLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKH---DKTVDIYGHVTCLRAQR 464
+ GP++VHCSAG+GRTG FIVID +I+ I+ D +D+ + +R+QR
Sbjct: 190 --------MDAGPVVVHCSAGIGRTGTFIVIDILIDIIREKGVDCDIDVPKTIQMVRSQR 241
Query: 465 NYMVQTEDQYMFIHDAL 481
+ MVQTE QY FI+ A+
Sbjct: 242 SGMVQTEAQYRFIYMAV 258
Score = 170 bits (431), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 107/257 (41%), Positives = 148/257 (57%), Gaps = 27/257 (10%)
Query: 752 NKAKNRYANVIAYDHSRVILSTVD-GIPGSDYINANY--------CDGYRKHNAYVATQG 802
NK KNRY N++ +DH+RV+L D P SDYINAN C+ + +Y+ATQG
Sbjct: 13 NKNKNRYKNILPFDHTRVVLHDGDPNEPVSDYINANIIMPEFETKCNNSKPKKSYIATQG 72
Query: 803 PLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSR-GTETYGHITVTLQDVQE 861
LQ T+ DFWRMV++ S IVM TK ER + KC +YWP + YG + +++V+E
Sbjct: 73 CLQNTVNDFWRMVFQENSRVIVMTTKEVERGKSKCVKYWPDEYALKEYG--VMRVRNVKE 130
Query: 862 LAS--YCIRTFMINK-GADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTN 918
A+ Y +R ++K G + R + Q F WPDHGVP P L FL V
Sbjct: 131 SAAHDYTLRELKLSKVGQGNTERTVWQYHFRTWPDHGVPSDPGGVLDFLEEVHHKQESI- 189
Query: 919 SLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKH---DKTVDIYGHVTCLRAQR 975
+ GP++VHCSAG+GRTG FIVID +I+ I+ D +D+ + +R+QR
Sbjct: 190 --------MDAGPVVVHCSAGIGRTGTFIVIDILIDIIREKGVDCDIDVPKTIQMVRSQR 241
Query: 976 NYMVQTEDQYMFIHDAL 992
+ MVQTE QY FI+ A+
Sbjct: 242 SGMVQTEAQYRFIYMAV 258
Score = 108 bits (269), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 93/158 (58%), Gaps = 5/158 (3%)
Query: 1493 VLIAYLVLFSQEKCHQYWPSERSIR-YEWFVVEPIAEYNMPQYVLREFKVTD-ARDATSR 1550
V+ V + KC +YWP E +++ Y V + E Y LRE K++ + T R
Sbjct: 94 VMTTKEVERGKSKCVKYWPDEYALKEYGVMRVRNVKESAAHDYTLRELKLSKVGQGNTER 153
Query: 1551 TLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLS 1610
T+ Q+ WP+ GVP G +DF+ +VH +E GP+ VHCSAG+GRTG FI +
Sbjct: 154 TVWQYHFRTWPDHGVPSDPGGVLDFLEEVHHKQESIMDAGPVVVHCSAGIGRTGTFIVID 213
Query: 1611 IVLERMQYEGV---IDLFQTVRILRTQRPAMVQTEHLY 1645
I+++ ++ +GV ID+ +T++++R+QR MVQTE Y
Sbjct: 214 ILIDIIREKGVDCDIDVPKTIQMVRSQRSGMVQTEAQY 251
Score = 107 bits (268), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 94/193 (48%), Gaps = 51/193 (26%)
Query: 1320 NKHKNRLVHILPVESSRVCL------TPVRGIEGSDYINASFI--------DGYRLRSAY 1365
NK+KNR +ILP + +RV L PV SDYINA+ I + + + +Y
Sbjct: 13 NKNKNRYKNILPFDHTRVVLHDGDPNEPV-----SDYINANIIMPEFETKCNNSKPKKSY 67
Query: 1366 IATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR----------YVLREFKVTDARD 1415
IATQG L +T DFWRM+++ NS ++VM TK E G+ Y L+E+ V R+
Sbjct: 68 IATQGCLQNTVNDFWRMVFQENSRVIVMTTKEVERGKSKCVKYWPDEYALKEYGVMRVRN 127
Query: 1416 A----------------------TSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKE 1453
T RT+ Q+ WP+ GVP G +DF+ +VH +E
Sbjct: 128 VKESAAHDYTLRELKLSKVGQGNTERTVWQYHFRTWPDHGVPSDPGGVLDFLEEVHHKQE 187
Query: 1454 QFGQDGPITVHCS 1466
GP+ VHCS
Sbjct: 188 SIMDAGPVVVHCS 200
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 58/83 (69%), Gaps = 4/83 (4%)
Query: 657 GIPGR-DGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGV-- 713
G+P G +DF+ +VH +E GP+ VHCSAG+GRTG FI + I+++ ++ +GV
Sbjct: 167 GVPSDPGGVLDFLEEVHHKQESIMDAGPVVVHCSAGIGRTGTFIVIDILIDIIREKGVDC 226
Query: 714 -IDLFQTVRILRTQRPAMVQTES 735
ID+ +T++++R+QR MVQTE+
Sbjct: 227 DIDVPKTIQMVRSQRSGMVQTEA 249
Score = 38.1 bits (87), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 17/20 (85%)
Query: 1726 LPVGPLIVHCSAGVGRTGCF 1745
+ GP++VHCSAG+GRTG F
Sbjct: 190 MDAGPVVVHCSAGIGRTGTF 209
Score = 35.0 bits (79), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Query: 633 NKAKNRYANVIAYDHSRVILSTVDGIPG 660
NK KNRY N++ +DH+RV+L DG P
Sbjct: 13 NKNKNRYKNILPFDHTRVVLH--DGDPN 38
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 567 GFIDFIGQVHKTKEQFGQDGPITVHCS 593
G +DF+ +VH +E GP+ VHCS
Sbjct: 174 GVLDFLEEVHHKQESIMDAGPVVVHCS 200
>pdb|3CWE|A Chain A, Ptp1b In Complex With A Phosphonic Acid Inhibitor
Length = 290
Score = 170 bits (431), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 94/254 (37%), Positives = 140/254 (55%), Gaps = 24/254 (9%)
Query: 241 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 300
NK +NRY +V +DHSR+ L D +DYINA+ +Y+ TQGPL T G F
Sbjct: 47 NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTCGHF 102
Query: 301 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 354
W MVWE +S +VM+ ++ E+ +KC QYWP + +T +T+ +D++ + Y
Sbjct: 103 WEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIK--SYY 160
Query: 355 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 414
+R + E REI +T WPD GVPE PA FL FL +VR ES +
Sbjct: 161 TVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSL 211
Query: 415 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 471
+ GP++VHCSAG+GR+G F + D ++++ K +VDI + +R R ++QT
Sbjct: 212 SPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTA 271
Query: 472 DQYMFIHDALLEAV 485
DQ F + A++E
Sbjct: 272 DQLRFSYLAVIEGA 285
Score = 170 bits (431), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 94/254 (37%), Positives = 140/254 (55%), Gaps = 24/254 (9%)
Query: 752 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 811
NK +NRY +V +DHSR+ L D +DYINA+ +Y+ TQGPL T G F
Sbjct: 47 NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTCGHF 102
Query: 812 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 865
W MVWE +S +VM+ ++ E+ +KC QYWP + +T +T+ +D++ + Y
Sbjct: 103 WEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIK--SYY 160
Query: 866 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 925
+R + E REI +T WPD GVPE PA FL FL +VR ES +
Sbjct: 161 TVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSL 211
Query: 926 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 982
+ GP++VHCSAG+GR+G F + D ++++ K +VDI + +R R ++QT
Sbjct: 212 SPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTA 271
Query: 983 DQYMFIHDALLEAV 996
DQ F + A++E
Sbjct: 272 DQLRFSYLAVIEGA 285
Score = 100 bits (249), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 93/199 (46%), Gaps = 40/199 (20%)
Query: 1304 NIRAEPSRFIS--ASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFIDGYRL 1361
+IR E S F A LP NK++NR + P + SR+ L E +DYINAS I
Sbjct: 29 DIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ----EDNDYINASLIKMEEA 84
Query: 1362 RSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------------- 1402
+ +YI TQGPL +T FW M+WE S VVML ++ E G
Sbjct: 85 QRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFED 144
Query: 1403 ---------------YVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQ 1447
Y +R+ ++ + +R + F WP+ GVP+S F++F+ +
Sbjct: 145 TNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFK 204
Query: 1448 VHKTKEQFGQDGPITVHCS 1466
V ++ + GP+ VHCS
Sbjct: 205 VRESGSLSPEHGPVVVHCS 223
Score = 77.4 bits (189), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 78/148 (52%), Gaps = 15/148 (10%)
Query: 1505 KCHQYWP--SERSIRYE------WFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQ 1556
KC QYWP E+ + +E + E I Y Y +R+ ++ + +R + F
Sbjct: 127 KCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSY----YTVRQLELENLTTQETREILHFH 182
Query: 1557 LIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVL 1613
WP+ GVP+S F++F+ +V ++ + GP+ VHCSAG+GR+G F T +++
Sbjct: 183 YTTWPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLM 242
Query: 1614 ERMQYEGVIDLFQTVRILRTQRPAMVQT 1641
++ + +D+ + + +R R ++QT
Sbjct: 243 DKRKDPSSVDIKKVLLEMRKFRMGLIQT 270
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 105/243 (43%), Gaps = 35/243 (14%)
Query: 525 NIRAEPSRFIS--ASLPCNKHKNRLVHILPVESSRVCLTPVRGDGFID--FIGQVHKTKE 580
+IR E S F A LP NK++NR + P + SR+ L D +I+ I +
Sbjct: 29 DIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQEDND-YINASLIKMEEAQRS 87
Query: 581 QFGQDGPITVHCSRLAQHIENLKANDNLKFSQEYE--SIEPGQQFTWDHSSMEMNKAKNR 638
GP+ C + + K+ + ++ E S++ Q + + + N
Sbjct: 88 YILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNL 147
Query: 639 YANVIAYD------------------HSRVIL-----STVD-GIPGRDG-FIDFIGQVHK 673
+I+ D +R IL + D G+P F++F+ +V +
Sbjct: 148 KLTLISEDIKSYYTVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRE 207
Query: 674 TKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVLERMQYEGVIDLFQTVRILRTQRPAM 730
+ + GP+ VHCSAG+GR+G F T +++++ + +D+ + + +R R +
Sbjct: 208 SGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGL 267
Query: 731 VQT 733
+QT
Sbjct: 268 IQT 270
Score = 39.7 bits (91), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 1711 LLFILKSSLESSGVNLPVGPLIVHCSAGVGRTGCFIVID 1749
L F+ K ES ++ GP++VHCSAG+GR+G F + D
Sbjct: 199 LNFLFKVR-ESGSLSPEHGPVVVHCSAGIGRSGTFCLAD 236
>pdb|2F6F|A Chain A, The Structure Of The S295f Mutant Of Human Ptp1b
Length = 302
Score = 170 bits (431), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 94/254 (37%), Positives = 140/254 (55%), Gaps = 24/254 (9%)
Query: 241 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 300
NK +NRY +V +DHSR+ L D +DYINA+ +Y+ TQGPL T G F
Sbjct: 44 NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTCGHF 99
Query: 301 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 354
W MVWE +S +VM+ ++ E+ +KC QYWP + +T +T+ +D++ + Y
Sbjct: 100 WEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIK--SYY 157
Query: 355 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 414
+R + E REI +T WPD GVPE PA FL FL +VR ES +
Sbjct: 158 TVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSL 208
Query: 415 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 471
+ GP++VHCSAG+GR+G F + D ++++ K +VDI + +R R ++QT
Sbjct: 209 SPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTA 268
Query: 472 DQYMFIHDALLEAV 485
DQ F + A++E
Sbjct: 269 DQLRFSYLAVIEGA 282
Score = 170 bits (431), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 94/254 (37%), Positives = 140/254 (55%), Gaps = 24/254 (9%)
Query: 752 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 811
NK +NRY +V +DHSR+ L D +DYINA+ +Y+ TQGPL T G F
Sbjct: 44 NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTCGHF 99
Query: 812 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 865
W MVWE +S +VM+ ++ E+ +KC QYWP + +T +T+ +D++ + Y
Sbjct: 100 WEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIK--SYY 157
Query: 866 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 925
+R + E REI +T WPD GVPE PA FL FL +VR ES +
Sbjct: 158 TVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSL 208
Query: 926 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 982
+ GP++VHCSAG+GR+G F + D ++++ K +VDI + +R R ++QT
Sbjct: 209 SPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTA 268
Query: 983 DQYMFIHDALLEAV 996
DQ F + A++E
Sbjct: 269 DQLRFSYLAVIEGA 282
Score = 100 bits (248), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 93/199 (46%), Gaps = 40/199 (20%)
Query: 1304 NIRAEPSRFIS--ASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFIDGYRL 1361
+IR E S F A LP NK++NR + P + SR+ L E +DYINAS I
Sbjct: 26 DIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ----EDNDYINASLIKMEEA 81
Query: 1362 RSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------------- 1402
+ +YI TQGPL +T FW M+WE S VVML ++ E G
Sbjct: 82 QRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFED 141
Query: 1403 ---------------YVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQ 1447
Y +R+ ++ + +R + F WP+ GVP+S F++F+ +
Sbjct: 142 TNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFK 201
Query: 1448 VHKTKEQFGQDGPITVHCS 1466
V ++ + GP+ VHCS
Sbjct: 202 VRESGSLSPEHGPVVVHCS 220
Score = 77.0 bits (188), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 78/148 (52%), Gaps = 15/148 (10%)
Query: 1505 KCHQYWP--SERSIRYE------WFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQ 1556
KC QYWP E+ + +E + E I Y Y +R+ ++ + +R + F
Sbjct: 124 KCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSY----YTVRQLELENLTTQETREILHFH 179
Query: 1557 LIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVL 1613
WP+ GVP+S F++F+ +V ++ + GP+ VHCSAG+GR+G F T +++
Sbjct: 180 YTTWPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLM 239
Query: 1614 ERMQYEGVIDLFQTVRILRTQRPAMVQT 1641
++ + +D+ + + +R R ++QT
Sbjct: 240 DKRKDPSSVDIKKVLLEMRKFRMGLIQT 267
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 105/243 (43%), Gaps = 35/243 (14%)
Query: 525 NIRAEPSRFIS--ASLPCNKHKNRLVHILPVESSRVCLTPVRGDGFID--FIGQVHKTKE 580
+IR E S F A LP NK++NR + P + SR+ L D +I+ I +
Sbjct: 26 DIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQEDND-YINASLIKMEEAQRS 84
Query: 581 QFGQDGPITVHCSRLAQHIENLKANDNLKFSQEYE--SIEPGQQFTWDHSSMEMNKAKNR 638
GP+ C + + K+ + ++ E S++ Q + + + N
Sbjct: 85 YILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNL 144
Query: 639 YANVIAYD------------------HSRVIL-----STVD-GIPGRDG-FIDFIGQVHK 673
+I+ D +R IL + D G+P F++F+ +V +
Sbjct: 145 KLTLISEDIKSYYTVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRE 204
Query: 674 TKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVLERMQYEGVIDLFQTVRILRTQRPAM 730
+ + GP+ VHCSAG+GR+G F T +++++ + +D+ + + +R R +
Sbjct: 205 SGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGL 264
Query: 731 VQT 733
+QT
Sbjct: 265 IQT 267
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 1711 LLFILKSSLESSGVNLPVGPLIVHCSAGVGRTGCFIVID 1749
L F+ K ES ++ GP++VHCSAG+GR+G F + D
Sbjct: 196 LNFLFKVR-ESGSLSPEHGPVVVHCSAGIGRSGTFCLAD 233
>pdb|1BZC|A Chain A, Human Ptp1b Catalytic Domain Complexed With Tpi
Length = 321
Score = 170 bits (430), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 95/274 (34%), Positives = 150/274 (54%), Gaps = 26/274 (9%)
Query: 752 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 811
NK +NRY +V +DHSR+ L D +DYINA+ +Y+ TQGPL T G F
Sbjct: 40 NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTCGHF 95
Query: 812 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 865
W MVWE +S +VM+ ++ E+ +KC QYWP + +T +T+ +D++ + Y
Sbjct: 96 WEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIK--SYY 153
Query: 866 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 925
+R + E REI +T WPD GVPE PA FL FL +VR ES +
Sbjct: 154 TVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSL 204
Query: 926 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 982
+ GP++VHCSAG+GR+G F + D ++++ K +VDI + +R R ++QT
Sbjct: 205 SPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLDMRKFRMGLIQTA 264
Query: 983 DQYMFIHDALLEAV--LCGNTEIPASSQMITRKD 1014
+Q F + A++E + G++ + + ++ +D
Sbjct: 265 EQLRFSYLAVIEGAKFIMGDSSVQDQWKELSHED 298
Score = 169 bits (428), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 93/254 (36%), Positives = 140/254 (55%), Gaps = 24/254 (9%)
Query: 241 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 300
NK +NRY +V +DHSR+ L D +DYINA+ +Y+ TQGPL T G F
Sbjct: 40 NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTCGHF 95
Query: 301 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 354
W MVWE +S +VM+ ++ E+ +KC QYWP + +T +T+ +D++ + Y
Sbjct: 96 WEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIK--SYY 153
Query: 355 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 414
+R + E REI +T WPD GVPE PA FL FL +VR ES +
Sbjct: 154 TVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSL 204
Query: 415 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 471
+ GP++VHCSAG+GR+G F + D ++++ K +VDI + +R R ++QT
Sbjct: 205 SPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLDMRKFRMGLIQTA 264
Query: 472 DQYMFIHDALLEAV 485
+Q F + A++E
Sbjct: 265 EQLRFSYLAVIEGA 278
Score = 100 bits (249), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 93/199 (46%), Gaps = 40/199 (20%)
Query: 1304 NIRAEPSRFIS--ASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFIDGYRL 1361
+IR E S F A LP NK++NR + P + SR+ L E +DYINAS I
Sbjct: 22 DIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ----EDNDYINASLIKMEEA 77
Query: 1362 RSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------------- 1402
+ +YI TQGPL +T FW M+WE S VVML ++ E G
Sbjct: 78 QRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFED 137
Query: 1403 ---------------YVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQ 1447
Y +R+ ++ + +R + F WP+ GVP+S F++F+ +
Sbjct: 138 TNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFK 197
Query: 1448 VHKTKEQFGQDGPITVHCS 1466
V ++ + GP+ VHCS
Sbjct: 198 VRESGSLSPEHGPVVVHCS 216
Score = 77.4 bits (189), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 78/148 (52%), Gaps = 15/148 (10%)
Query: 1505 KCHQYWP--SERSIRYE------WFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQ 1556
KC QYWP E+ + +E + E I Y Y +R+ ++ + +R + F
Sbjct: 120 KCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSY----YTVRQLELENLTTQETREILHFH 175
Query: 1557 LIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVL 1613
WP+ GVP+S F++F+ +V ++ + GP+ VHCSAG+GR+G F T +++
Sbjct: 176 YTTWPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLM 235
Query: 1614 ERMQYEGVIDLFQTVRILRTQRPAMVQT 1641
++ + +D+ + + +R R ++QT
Sbjct: 236 DKRKDPSSVDIKKVLLDMRKFRMGLIQT 263
Score = 50.4 bits (119), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 112/262 (42%), Gaps = 45/262 (17%)
Query: 516 MELEFKKLS----------NIRAEPSRFIS--ASLPCNKHKNRLVHILPVESSRVCLTPV 563
ME EF+++ +IR E S F A LP NK++NR + P + SR+ L
Sbjct: 3 MEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQE 62
Query: 564 RGDGFID--FIGQVHKTKEQFGQDGPITVHCSRLAQHIENLKANDNLKFSQEYE--SIEP 619
D +I+ I + GP+ C + + K+ + ++ E S++
Sbjct: 63 DND-YINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKC 121
Query: 620 GQQFTWDHSSMEMNKAKNRYANVIAYD------------------HSRVIL-----STVD 656
Q + + + N +I+ D +R IL + D
Sbjct: 122 AQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHYTTWPD 181
Query: 657 -GIPGRDG-FIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVLERMQYE 711
G+P F++F+ +V ++ + GP+ VHCSAG+GR+G F T +++++ +
Sbjct: 182 FGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDP 241
Query: 712 GVIDLFQTVRILRTQRPAMVQT 733
+D+ + + +R R ++QT
Sbjct: 242 SSVDIKKVLLDMRKFRMGLIQT 263
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 1711 LLFILKSSLESSGVNLPVGPLIVHCSAGVGRTGCFIVID 1749
L F+ K ES ++ GP++VHCSAG+GR+G F + D
Sbjct: 192 LNFLFKVR-ESGSLSPEHGPVVVHCSAGIGRSGTFCLAD 229
>pdb|1BZH|A Chain A, Cyclic Peptide Inhibitor Of Human Ptp1b
Length = 298
Score = 170 bits (430), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 95/274 (34%), Positives = 150/274 (54%), Gaps = 26/274 (9%)
Query: 752 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 811
NK +NRY +V +DHSR+ L D +DYINA+ +Y+ TQGPL T G F
Sbjct: 40 NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTCGHF 95
Query: 812 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 865
W MVWE +S +VM+ ++ E+ +KC QYWP + +T +T+ +D++ + Y
Sbjct: 96 WEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIK--SYY 153
Query: 866 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 925
+R + E REI +T WPD GVPE PA FL FL +VR ES +
Sbjct: 154 TVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSL 204
Query: 926 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 982
+ GP++VHCSAG+GR+G F + D ++++ K +VDI + +R R ++QT
Sbjct: 205 SPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLDMRKFRMGLIQTA 264
Query: 983 DQYMFIHDALLEAV--LCGNTEIPASSQMITRKD 1014
+Q F + A++E + G++ + + ++ +D
Sbjct: 265 EQLRFSYLAVIEGAKFIMGDSSVQDQWKELSHED 298
Score = 169 bits (427), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 93/254 (36%), Positives = 140/254 (55%), Gaps = 24/254 (9%)
Query: 241 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 300
NK +NRY +V +DHSR+ L D +DYINA+ +Y+ TQGPL T G F
Sbjct: 40 NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTCGHF 95
Query: 301 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 354
W MVWE +S +VM+ ++ E+ +KC QYWP + +T +T+ +D++ + Y
Sbjct: 96 WEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIK--SYY 153
Query: 355 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 414
+R + E REI +T WPD GVPE PA FL FL +VR ES +
Sbjct: 154 TVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSL 204
Query: 415 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 471
+ GP++VHCSAG+GR+G F + D ++++ K +VDI + +R R ++QT
Sbjct: 205 SPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLDMRKFRMGLIQTA 264
Query: 472 DQYMFIHDALLEAV 485
+Q F + A++E
Sbjct: 265 EQLRFSYLAVIEGA 278
Score = 100 bits (249), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 93/199 (46%), Gaps = 40/199 (20%)
Query: 1304 NIRAEPSRFIS--ASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFIDGYRL 1361
+IR E S F A LP NK++NR + P + SR+ L E +DYINAS I
Sbjct: 22 DIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ----EDNDYINASLIKMEEA 77
Query: 1362 RSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------------- 1402
+ +YI TQGPL +T FW M+WE S VVML ++ E G
Sbjct: 78 QRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFED 137
Query: 1403 ---------------YVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQ 1447
Y +R+ ++ + +R + F WP+ GVP+S F++F+ +
Sbjct: 138 TNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFK 197
Query: 1448 VHKTKEQFGQDGPITVHCS 1466
V ++ + GP+ VHCS
Sbjct: 198 VRESGSLSPEHGPVVVHCS 216
Score = 77.0 bits (188), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 78/148 (52%), Gaps = 15/148 (10%)
Query: 1505 KCHQYWP--SERSIRYE------WFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQ 1556
KC QYWP E+ + +E + E I Y Y +R+ ++ + +R + F
Sbjct: 120 KCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSY----YTVRQLELENLTTQETREILHFH 175
Query: 1557 LIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVL 1613
WP+ GVP+S F++F+ +V ++ + GP+ VHCSAG+GR+G F T +++
Sbjct: 176 YTTWPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLM 235
Query: 1614 ERMQYEGVIDLFQTVRILRTQRPAMVQT 1641
++ + +D+ + + +R R ++QT
Sbjct: 236 DKRKDPSSVDIKKVLLDMRKFRMGLIQT 263
Score = 50.4 bits (119), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 112/262 (42%), Gaps = 45/262 (17%)
Query: 516 MELEFKKLS----------NIRAEPSRFIS--ASLPCNKHKNRLVHILPVESSRVCLTPV 563
ME EF+++ +IR E S F A LP NK++NR + P + SR+ L
Sbjct: 3 MEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQE 62
Query: 564 RGDGFID--FIGQVHKTKEQFGQDGPITVHCSRLAQHIENLKANDNLKFSQEYE--SIEP 619
D +I+ I + GP+ C + + K+ + ++ E S++
Sbjct: 63 DND-YINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKC 121
Query: 620 GQQFTWDHSSMEMNKAKNRYANVIAYD------------------HSRVIL-----STVD 656
Q + + + N +I+ D +R IL + D
Sbjct: 122 AQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHYTTWPD 181
Query: 657 -GIPGR-DGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVLERMQYE 711
G+P F++F+ +V ++ + GP+ VHCSAG+GR+G F T +++++ +
Sbjct: 182 FGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDP 241
Query: 712 GVIDLFQTVRILRTQRPAMVQT 733
+D+ + + +R R ++QT
Sbjct: 242 SSVDIKKVLLDMRKFRMGLIQT 263
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 1711 LLFILKSSLESSGVNLPVGPLIVHCSAGVGRTGCFIVID 1749
L F+ K ES ++ GP++VHCSAG+GR+G F + D
Sbjct: 192 LNFLFKVR-ESGSLSPEHGPVVVHCSAGIGRSGTFCLAD 229
>pdb|1LQF|A Chain A, Structure Of Ptp1b In Complex With A Peptidic
Bisphosphonate Inhibitor
pdb|1LQF|B Chain B, Structure Of Ptp1b In Complex With A Peptidic
Bisphosphonate Inhibitor
pdb|1LQF|C Chain C, Structure Of Ptp1b In Complex With A Peptidic
Bisphosphonate Inhibitor
pdb|1LQF|D Chain D, Structure Of Ptp1b In Complex With A Peptidic
Bisphosphonate Inhibitor
Length = 295
Score = 170 bits (430), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 94/254 (37%), Positives = 140/254 (55%), Gaps = 24/254 (9%)
Query: 241 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 300
NK +NRY +V +DHSR+ L D +DYINA+ +Y+ TQGPL T G F
Sbjct: 52 NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTCGHF 107
Query: 301 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 354
W MVWE +S +VM+ ++ E+ +KC QYWP + +T +T+ +D++ + Y
Sbjct: 108 WEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIK--SYY 165
Query: 355 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 414
+R + E REI +T WPD GVPE PA FL FL +VR ES +
Sbjct: 166 TVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSL 216
Query: 415 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 471
+ GP++VHCSAG+GR+G F + D ++++ K +VDI + +R R ++QT
Sbjct: 217 SPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTA 276
Query: 472 DQYMFIHDALLEAV 485
DQ F + A++E
Sbjct: 277 DQLRFSYLAVIEGA 290
Score = 170 bits (430), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 94/254 (37%), Positives = 140/254 (55%), Gaps = 24/254 (9%)
Query: 752 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 811
NK +NRY +V +DHSR+ L D +DYINA+ +Y+ TQGPL T G F
Sbjct: 52 NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTCGHF 107
Query: 812 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 865
W MVWE +S +VM+ ++ E+ +KC QYWP + +T +T+ +D++ + Y
Sbjct: 108 WEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIK--SYY 165
Query: 866 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 925
+R + E REI +T WPD GVPE PA FL FL +VR ES +
Sbjct: 166 TVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSL 216
Query: 926 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 982
+ GP++VHCSAG+GR+G F + D ++++ K +VDI + +R R ++QT
Sbjct: 217 SPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTA 276
Query: 983 DQYMFIHDALLEAV 996
DQ F + A++E
Sbjct: 277 DQLRFSYLAVIEGA 290
Score = 100 bits (248), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 93/199 (46%), Gaps = 40/199 (20%)
Query: 1304 NIRAEPSRFIS--ASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFIDGYRL 1361
+IR E S F A LP NK++NR + P + SR+ L E +DYINAS I
Sbjct: 34 DIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ----EDNDYINASLIKMEEA 89
Query: 1362 RSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------------- 1402
+ +YI TQGPL +T FW M+WE S VVML ++ E G
Sbjct: 90 QRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFED 149
Query: 1403 ---------------YVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQ 1447
Y +R+ ++ + +R + F WP+ GVP+S F++F+ +
Sbjct: 150 TNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFK 209
Query: 1448 VHKTKEQFGQDGPITVHCS 1466
V ++ + GP+ VHCS
Sbjct: 210 VRESGSLSPEHGPVVVHCS 228
Score = 77.0 bits (188), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 78/148 (52%), Gaps = 15/148 (10%)
Query: 1505 KCHQYWP--SERSIRYE------WFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQ 1556
KC QYWP E+ + +E + E I Y Y +R+ ++ + +R + F
Sbjct: 132 KCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSY----YTVRQLELENLTTQETREILHFH 187
Query: 1557 LIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVL 1613
WP+ GVP+S F++F+ +V ++ + GP+ VHCSAG+GR+G F T +++
Sbjct: 188 YTTWPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLM 247
Query: 1614 ERMQYEGVIDLFQTVRILRTQRPAMVQT 1641
++ + +D+ + + +R R ++QT
Sbjct: 248 DKRKDPSSVDIKKVLLEMRKFRMGLIQT 275
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 105/243 (43%), Gaps = 35/243 (14%)
Query: 525 NIRAEPSRFIS--ASLPCNKHKNRLVHILPVESSRVCLTPVRGDGFID--FIGQVHKTKE 580
+IR E S F A LP NK++NR + P + SR+ L D +I+ I +
Sbjct: 34 DIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQEDND-YINASLIKMEEAQRS 92
Query: 581 QFGQDGPITVHCSRLAQHIENLKANDNLKFSQEYE--SIEPGQQFTWDHSSMEMNKAKNR 638
GP+ C + + K+ + ++ E S++ Q + + + N
Sbjct: 93 YILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNL 152
Query: 639 YANVIAYD------------------HSRVIL-----STVD-GIPGRDG-FIDFIGQVHK 673
+I+ D +R IL + D G+P F++F+ +V +
Sbjct: 153 KLTLISEDIKSYYTVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRE 212
Query: 674 TKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVLERMQYEGVIDLFQTVRILRTQRPAM 730
+ + GP+ VHCSAG+GR+G F T +++++ + +D+ + + +R R +
Sbjct: 213 SGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGL 272
Query: 731 VQT 733
+QT
Sbjct: 273 IQT 275
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 1711 LLFILKSSLESSGVNLPVGPLIVHCSAGVGRTGCFIVID 1749
L F+ K ES ++ GP++VHCSAG+GR+G F + D
Sbjct: 204 LNFLFKVR-ESGSLSPEHGPVVVHCSAGIGRSGTFCLAD 241
>pdb|2CJZ|A Chain A, Crystal Structure Of The C472s Mutant Of Human Protein
Tyrosine Phosphatase Ptpn5 (Step, Striatum Enriched
Phosphatase) In Complex With Phosphotyrosine
Length = 305
Score = 169 bits (428), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 93/240 (38%), Positives = 130/240 (54%), Gaps = 14/240 (5%)
Query: 244 KNRYANVIAYDHSRVILSTVD-GIPGSDYINANYCDGYR-KHNAYVATQGPLQETLGDFW 301
KNRY ++ HSRV L++ D P S YINANY GY + Y+ATQGP+ T+ DFW
Sbjct: 67 KNRYKTILPNPHSRVCLTSPDPDDPLSSYINANYIRGYGGEEKVYIATQGPIVSTVADFW 126
Query: 302 RMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYCIRTFMI 361
RMVW+ + IVM+T +EE KC +YWP Y + +T+Q V Y +R +
Sbjct: 127 RMVWQEHTPIIVMITNIEEMNE-KCTEYWPEEQV-AYDGVEITVQKVIHTEDYRLRLISL 184
Query: 362 NKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPL 421
G +E R +K FT+WPD P+ P L +R V + + G + P+
Sbjct: 185 KSG--TEERGLKHYWFTSWPDQKTPDRAPPLLHLVREVE------EAAQQEGPH--CAPI 234
Query: 422 IVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDAL 481
IVH SAG+GRTGCFI ++++ + VDI LR R M+QT +QY F+H +
Sbjct: 235 IVHSSAGIGRTGCFIATSICCQQLRQEGVVDILKTTCQLRQDRGGMIQTCEQYQFVHHVM 294
Score = 169 bits (428), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 93/240 (38%), Positives = 130/240 (54%), Gaps = 14/240 (5%)
Query: 755 KNRYANVIAYDHSRVILSTVD-GIPGSDYINANYCDGYR-KHNAYVATQGPLQETLGDFW 812
KNRY ++ HSRV L++ D P S YINANY GY + Y+ATQGP+ T+ DFW
Sbjct: 67 KNRYKTILPNPHSRVCLTSPDPDDPLSSYINANYIRGYGGEEKVYIATQGPIVSTVADFW 126
Query: 813 RMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYCIRTFMI 872
RMVW+ + IVM+T +EE KC +YWP Y + +T+Q V Y +R +
Sbjct: 127 RMVWQEHTPIIVMITNIEEMNE-KCTEYWPEEQV-AYDGVEITVQKVIHTEDYRLRLISL 184
Query: 873 NKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPL 932
G +E R +K FT+WPD P+ P L +R V + + G + P+
Sbjct: 185 KSG--TEERGLKHYWFTSWPDQKTPDRAPPLLHLVREVE------EAAQQEGPH--CAPI 234
Query: 933 IVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDAL 992
IVH SAG+GRTGCFI ++++ + VDI LR R M+QT +QY F+H +
Sbjct: 235 IVHSSAGIGRTGCFIATSICCQQLRQEGVVDILKTTCQLRQDRGGMIQTCEQYQFVHHVM 294
Score = 90.1 bits (222), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 91/206 (44%), Gaps = 32/206 (15%)
Query: 1290 LTPVRGKTEFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLT-PVRGIEGS 1348
L P + EF ++ +P + +P KNR ILP SRVCLT P S
Sbjct: 37 LDPFLLQAEFFEIPMNFVDPKEY---DIPGLVRKNRYKTILPNPHSRVCLTSPDPDDPLS 93
Query: 1349 DYINASFIDGYR-LRSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMG----RY 1403
YINA++I GY YIATQGP+ T DFWRM+W+ ++ I+VM+T ++EM Y
Sbjct: 94 SYINANYIRGYGGEEKVYIATQGPIVSTVADFWRMVWQEHTPIIVMITNIEEMNEKCTEY 153
Query: 1404 VLREFKVTDARDAT----------------------SRTLRQFQLIDWPEQGVPKSGDGF 1441
E D + T R L+ + WP+Q P
Sbjct: 154 WPEEQVAYDGVEITVQKVIHTEDYRLRLISLKSGTEERGLKHYWFTSWPDQKTPDRAPPL 213
Query: 1442 IDFIGQVHKTKEQFG-QDGPITVHCS 1466
+ + +V + +Q G PI VH S
Sbjct: 214 LHLVREVEEAAQQEGPHCAPIIVHSS 239
Score = 84.7 bits (208), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 72/143 (50%), Gaps = 4/143 (2%)
Query: 1504 EKCHQYWPSERSIRYEWFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQLIDWPEQ 1563
EKC +YWP E+ + Y+ + + Y LR + + R L+ + WP+Q
Sbjct: 148 EKCTEYWPEEQ-VAYDGVEITVQKVIHTEDYRLRLISLKSGTE--ERGLKHYWFTSWPDQ 204
Query: 1564 GVPKSGDGFIDFIGQVHKTKEQFG-QDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVI 1622
P + + +V + +Q G PI VH SAG+GRTG FI SI ++++ EGV+
Sbjct: 205 KTPDRAPPLLHLVREVEEAAQQEGPHCAPIIVHSSAGIGRTGCFIATSICCQQLRQEGVV 264
Query: 1623 DLFQTVRILRTQRPAMVQTEHLY 1645
D+ +T LR R M+QT Y
Sbjct: 265 DILKTTCQLRQDRGGMIQTCEQY 287
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 68/273 (24%), Positives = 112/273 (41%), Gaps = 47/273 (17%)
Query: 516 MELEFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLT-PVRGDGFIDFI-- 572
++ EF ++ +P + +P KNR ILP SRVCLT P D +I
Sbjct: 42 LQAEFFEIPMNFVDPKEY---DIPGLVRKNRYKTILPNPHSRVCLTSPDPDDPLSSYINA 98
Query: 573 ----GQVHKTKEQFGQDGPITVHCSRL-----AQHIENLKANDNLK-FSQEYESIEPGQQ 622
G + K GPI + +H + N++ +++ P +Q
Sbjct: 99 NYIRGYGGEEKVYIATQGPIVSTVADFWRMVWQEHTPIIVMITNIEEMNEKCTEYWPEEQ 158
Query: 623 FTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVDGIPGR----------------DGFID 666
+D + + K + D+ ++S G R D
Sbjct: 159 VAYDGVEITVQKV------IHTEDYRLRLISLKSGTEERGLKHYWFTSWPDQKTPDRAPP 212
Query: 667 FIGQVHKTKEQFGQDGP----ITVHCSAGVGRTGVFITLSIVLERMQYEGVIDLFQTVRI 722
+ V + +E Q+GP I VH SAG+GRTG FI SI ++++ EGV+D+ +T
Sbjct: 213 LLHLVREVEEAAQQEGPHCAPIIVHSSAGIGRTGCFIATSICCQQLRQEGVVDILKTTCQ 272
Query: 723 LRTQRPAMVQTESIEPGQQFTWDHSSMEMNKAK 755
LR R M+QT +Q+ + H M + + +
Sbjct: 273 LRQDRGGMIQT-----CEQYQFVHHVMSLYEKQ 300
Score = 39.3 bits (90), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 36/91 (39%), Gaps = 31/91 (34%)
Query: 1711 LLFILKSSLESSGVNLP-VGPLIVHCSAGVGRTGCFI----------------------- 1746
LL +++ E++ P P+IVH SAG+GRTGCFI
Sbjct: 213 LLHLVREVEEAAQQEGPHCAPIIVHSSAGIGRTGCFIATSICCQQLRQEGVVDILKTTCQ 272
Query: 1747 -------VIDAKEQYQFCYHAALEYLGSFDH 1770
+I EQYQF +H Y H
Sbjct: 273 LRQDRGGMIQTCEQYQFVHHVMSLYEKQLSH 303
>pdb|2BV5|A Chain A, Crystal Structure Of The Human Protein Tyrosine
Phosphatase Ptpn5 At 1.8a Resolution
Length = 282
Score = 169 bits (428), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 93/240 (38%), Positives = 130/240 (54%), Gaps = 14/240 (5%)
Query: 244 KNRYANVIAYDHSRVILSTVD-GIPGSDYINANYCDGYR-KHNAYVATQGPLQETLGDFW 301
KNRY ++ HSRV L++ D P S YINANY GY + Y+ATQGP+ T+ DFW
Sbjct: 46 KNRYKTILPNPHSRVCLTSPDPDDPLSSYINANYIRGYGGEEKVYIATQGPIVSTVADFW 105
Query: 302 RMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYCIRTFMI 361
RMVW+ + IVM+T +EE KC +YWP Y + +T+Q V Y +R +
Sbjct: 106 RMVWQEHTPIIVMITNIEEMNE-KCTEYWPEEQV-AYDGVEITVQKVIHTEDYRLRLISL 163
Query: 362 NKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPL 421
G +E R +K FT+WPD P+ P L +R V + + G + P+
Sbjct: 164 KSG--TEERGLKHYWFTSWPDQKTPDRAPPLLHLVREVE------EAAQQEGPH--CAPI 213
Query: 422 IVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDAL 481
IVH SAG+GRTGCFI ++++ + VDI LR R M+QT +QY F+H +
Sbjct: 214 IVHXSAGIGRTGCFIATSICCQQLRQEGVVDILKTTCQLRQDRGGMIQTCEQYQFVHHVM 273
Score = 169 bits (428), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 93/240 (38%), Positives = 130/240 (54%), Gaps = 14/240 (5%)
Query: 755 KNRYANVIAYDHSRVILSTVD-GIPGSDYINANYCDGYR-KHNAYVATQGPLQETLGDFW 812
KNRY ++ HSRV L++ D P S YINANY GY + Y+ATQGP+ T+ DFW
Sbjct: 46 KNRYKTILPNPHSRVCLTSPDPDDPLSSYINANYIRGYGGEEKVYIATQGPIVSTVADFW 105
Query: 813 RMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYCIRTFMI 872
RMVW+ + IVM+T +EE KC +YWP Y + +T+Q V Y +R +
Sbjct: 106 RMVWQEHTPIIVMITNIEEMNE-KCTEYWPEEQV-AYDGVEITVQKVIHTEDYRLRLISL 163
Query: 873 NKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPL 932
G +E R +K FT+WPD P+ P L +R V + + G + P+
Sbjct: 164 KSG--TEERGLKHYWFTSWPDQKTPDRAPPLLHLVREVE------EAAQQEGPH--CAPI 213
Query: 933 IVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDAL 992
IVH SAG+GRTGCFI ++++ + VDI LR R M+QT +QY F+H +
Sbjct: 214 IVHXSAGIGRTGCFIATSICCQQLRQEGVVDILKTTCQLRQDRGGMIQTCEQYQFVHHVM 273
Score = 90.1 bits (222), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 91/206 (44%), Gaps = 32/206 (15%)
Query: 1290 LTPVRGKTEFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLT-PVRGIEGS 1348
L P + EF ++ +P + +P KNR ILP SRVCLT P S
Sbjct: 16 LDPFLLQAEFFEIPMNFVDPKEY---DIPGLVRKNRYKTILPNPHSRVCLTSPDPDDPLS 72
Query: 1349 DYINASFIDGYR-LRSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMG----RY 1403
YINA++I GY YIATQGP+ T DFWRM+W+ ++ I+VM+T ++EM Y
Sbjct: 73 SYINANYIRGYGGEEKVYIATQGPIVSTVADFWRMVWQEHTPIIVMITNIEEMNEKCTEY 132
Query: 1404 VLREFKVTDARDAT----------------------SRTLRQFQLIDWPEQGVPKSGDGF 1441
E D + T R L+ + WP+Q P
Sbjct: 133 WPEEQVAYDGVEITVQKVIHTEDYRLRLISLKSGTEERGLKHYWFTSWPDQKTPDRAPPL 192
Query: 1442 IDFIGQVHKTKEQFG-QDGPITVHCS 1466
+ + +V + +Q G PI VH S
Sbjct: 193 LHLVREVEEAAQQEGPHCAPIIVHXS 218
Score = 84.3 bits (207), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 72/143 (50%), Gaps = 4/143 (2%)
Query: 1504 EKCHQYWPSERSIRYEWFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQLIDWPEQ 1563
EKC +YWP E+ + Y+ + + Y LR + + R L+ + WP+Q
Sbjct: 127 EKCTEYWPEEQ-VAYDGVEITVQKVIHTEDYRLRLISLKSGTE--ERGLKHYWFTSWPDQ 183
Query: 1564 GVPKSGDGFIDFIGQVHKTKEQFG-QDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVI 1622
P + + +V + +Q G PI VH SAG+GRTG FI SI ++++ EGV+
Sbjct: 184 KTPDRAPPLLHLVREVEEAAQQEGPHCAPIIVHXSAGIGRTGCFIATSICCQQLRQEGVV 243
Query: 1623 DLFQTVRILRTQRPAMVQTEHLY 1645
D+ +T LR R M+QT Y
Sbjct: 244 DILKTTCQLRQDRGGMIQTCEQY 266
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 110/269 (40%), Gaps = 47/269 (17%)
Query: 516 MELEFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLT-PVRGDGFIDFI-- 572
++ EF ++ +P + +P KNR ILP SRVCLT P D +I
Sbjct: 21 LQAEFFEIPMNFVDPKEY---DIPGLVRKNRYKTILPNPHSRVCLTSPDPDDPLSSYINA 77
Query: 573 ----GQVHKTKEQFGQDGPITVHCSRL-----AQHIENLKANDNLK-FSQEYESIEPGQQ 622
G + K GPI + +H + N++ +++ P +Q
Sbjct: 78 NYIRGYGGEEKVYIATQGPIVSTVADFWRMVWQEHTPIIVMITNIEEMNEKCTEYWPEEQ 137
Query: 623 FTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVDGIPGR----------------DGFID 666
+D + + K + D+ ++S G R D
Sbjct: 138 VAYDGVEITVQKV------IHTEDYRLRLISLKSGTEERGLKHYWFTSWPDQKTPDRAPP 191
Query: 667 FIGQVHKTKEQFGQDGP----ITVHCSAGVGRTGVFITLSIVLERMQYEGVIDLFQTVRI 722
+ V + +E Q+GP I VH SAG+GRTG FI SI ++++ EGV+D+ +T
Sbjct: 192 LLHLVREVEEAAQQEGPHCAPIIVHXSAGIGRTGCFIATSICCQQLRQEGVVDILKTTCQ 251
Query: 723 LRTQRPAMVQTESIEPGQQFTWDHSSMEM 751
LR R M+QT +Q+ + H M +
Sbjct: 252 LRQDRGGMIQT-----CEQYQFVHHVMSL 275
Score = 38.9 bits (89), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 36/91 (39%), Gaps = 31/91 (34%)
Query: 1711 LLFILKSSLESSGVNLP-VGPLIVHCSAGVGRTGCFI----------------------- 1746
LL +++ E++ P P+IVH SAG+GRTGCFI
Sbjct: 192 LLHLVREVEEAAQQEGPHCAPIIVHXSAGIGRTGCFIATSICCQQLRQEGVVDILKTTCQ 251
Query: 1747 -------VIDAKEQYQFCYHAALEYLGSFDH 1770
+I EQYQF +H Y H
Sbjct: 252 LRQDRGGMIQTCEQYQFVHHVMSLYEKQLSH 282
>pdb|1G1F|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With A Tri-Phosphorylated Peptide (Rdi(Ptr)
Etd(Ptr)(Ptr)rk) From The Insulin Receptor Kinase
pdb|1G1G|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With A Mono-Phosphorylated Peptide (Etdy(Ptr)
Rkggkgll) From The Insulin Receptor Kinase
pdb|1G1H|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With A Bis-Phosphorylated Peptide
(Etd(Ptr)(Ptr) Rkggkgll) From The Insulin Receptor Kinase
pdb|2B4S|A Chain A, Crystal Structure Of A Complex Between Ptp1b And The Insulin
Receptor Tyrosine Kinase
pdb|2B4S|C Chain C, Crystal Structure Of A Complex Between Ptp1b And The Insulin
Receptor Tyrosine Kinase
Length = 298
Score = 168 bits (426), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/274 (34%), Positives = 149/274 (54%), Gaps = 26/274 (9%)
Query: 752 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 811
NK +NRY +V +DHSR+ L D +DYINA+ +Y+ TQGPL T G F
Sbjct: 40 NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTCGHF 95
Query: 812 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 865
W MVWE +S +VM+ ++ E+ +KC QYWP + +T +T+ +D++ + Y
Sbjct: 96 WEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIK--SYY 153
Query: 866 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 925
+R + E REI +T WPD GVPE PA FL FL +VR ES +
Sbjct: 154 TVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSL 204
Query: 926 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 982
+ GP++VH SAG+GR+G F + D ++++ K +VDI + +R R ++QT
Sbjct: 205 SPEHGPVVVHASAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTA 264
Query: 983 DQYMFIHDALLEAV--LCGNTEIPASSQMITRKD 1014
DQ F + A++E + G++ + + ++ +D
Sbjct: 265 DQLRFSYLAVIEGAKFIMGDSSVQDQWKELSHED 298
Score = 167 bits (423), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 93/254 (36%), Positives = 139/254 (54%), Gaps = 24/254 (9%)
Query: 241 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 300
NK +NRY +V +DHSR+ L D +DYINA+ +Y+ TQGPL T G F
Sbjct: 40 NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTCGHF 95
Query: 301 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 354
W MVWE +S +VM+ ++ E+ +KC QYWP + +T +T+ +D++ + Y
Sbjct: 96 WEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIK--SYY 153
Query: 355 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 414
+R + E REI +T WPD GVPE PA FL FL +VR ES +
Sbjct: 154 TVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSL 204
Query: 415 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 471
+ GP++VH SAG+GR+G F + D ++++ K +VDI + +R R ++QT
Sbjct: 205 SPEHGPVVVHASAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTA 264
Query: 472 DQYMFIHDALLEAV 485
DQ F + A++E
Sbjct: 265 DQLRFSYLAVIEGA 278
Score = 97.1 bits (240), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 92/199 (46%), Gaps = 40/199 (20%)
Query: 1304 NIRAEPSRFIS--ASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFIDGYRL 1361
+IR E S F A LP NK++NR + P + SR+ L E +DYINAS I
Sbjct: 22 DIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ----EDNDYINASLIKMEEA 77
Query: 1362 RSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------------- 1402
+ +YI TQGPL +T FW M+WE S VVML ++ E G
Sbjct: 78 QRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFED 137
Query: 1403 ---------------YVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQ 1447
Y +R+ ++ + +R + F WP+ GVP+S F++F+ +
Sbjct: 138 TNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFK 197
Query: 1448 VHKTKEQFGQDGPITVHCS 1466
V ++ + GP+ VH S
Sbjct: 198 VRESGSLSPEHGPVVVHAS 216
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 77/148 (52%), Gaps = 15/148 (10%)
Query: 1505 KCHQYWP--SERSIRYE------WFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQ 1556
KC QYWP E+ + +E + E I Y Y +R+ ++ + +R + F
Sbjct: 120 KCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSY----YTVRQLELENLTTQETREILHFH 175
Query: 1557 LIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVL 1613
WP+ GVP+S F++F+ +V ++ + GP+ VH SAG+GR+G F T +++
Sbjct: 176 YTTWPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHASAGIGRSGTFCLADTCLLLM 235
Query: 1614 ERMQYEGVIDLFQTVRILRTQRPAMVQT 1641
++ + +D+ + + +R R ++QT
Sbjct: 236 DKRKDPSSVDIKKVLLEMRKFRMGLIQT 263
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/262 (22%), Positives = 111/262 (42%), Gaps = 45/262 (17%)
Query: 516 MELEFKKLS----------NIRAEPSRFIS--ASLPCNKHKNRLVHILPVESSRVCLTPV 563
ME EF+++ +IR E S F A LP NK++NR + P + SR+ L
Sbjct: 3 MEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQE 62
Query: 564 RGDGFID--FIGQVHKTKEQFGQDGPITVHCSRLAQHIENLKANDNLKFSQEYE--SIEP 619
D +I+ I + GP+ C + + K+ + ++ E S++
Sbjct: 63 DND-YINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKC 121
Query: 620 GQQFTWDHSSMEMNKAKNRYANVIAYD------------------HSRVIL-----STVD 656
Q + + + N +I+ D +R IL + D
Sbjct: 122 AQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHYTTWPD 181
Query: 657 -GIPGRDG-FIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVLERMQYE 711
G+P F++F+ +V ++ + GP+ VH SAG+GR+G F T +++++ +
Sbjct: 182 FGVPESPASFLNFLFKVRESGSLSPEHGPVVVHASAGIGRSGTFCLADTCLLLMDKRKDP 241
Query: 712 GVIDLFQTVRILRTQRPAMVQT 733
+D+ + + +R R ++QT
Sbjct: 242 SSVDIKKVLLEMRKFRMGLIQT 263
Score = 36.6 bits (83), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 1711 LLFILKSSLESSGVNLPVGPLIVHCSAGVGRTGCFIVID 1749
L F+ K ES ++ GP++VH SAG+GR+G F + D
Sbjct: 192 LNFLFKVR-ESGSLSPEHGPVVVHASAGIGRSGTFCLAD 229
>pdb|1EEN|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Acetyl-D-A-D-Bpa-Ptyr-L-I-P-Q-Q-G
pdb|1EEO|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Acetyl-E-L-E-F-Ptyr-M-D-Y-E-Nh2
pdb|1PTY|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Two Phosphotyrosine Molecules
Length = 321
Score = 168 bits (425), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/274 (34%), Positives = 149/274 (54%), Gaps = 26/274 (9%)
Query: 752 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 811
NK +NRY +V +DHSR+ L D +DYINA+ +Y+ TQGPL T G F
Sbjct: 40 NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTCGHF 95
Query: 812 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 865
W MVWE +S +VM+ ++ E+ +KC QYWP + +T +T+ +D++ + Y
Sbjct: 96 WEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIK--SYY 153
Query: 866 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 925
+R + E REI +T WPD GVPE PA FL FL +VR ES +
Sbjct: 154 TVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSL 204
Query: 926 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 982
+ GP++VH SAG+GR+G F + D ++++ K +VDI + +R R ++QT
Sbjct: 205 SPEHGPVVVHSSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTA 264
Query: 983 DQYMFIHDALLEAV--LCGNTEIPASSQMITRKD 1014
DQ F + A++E + G++ + + ++ +D
Sbjct: 265 DQLRFSYLAVIEGAKFIMGDSSVQDQWKELSHED 298
Score = 167 bits (423), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 93/254 (36%), Positives = 139/254 (54%), Gaps = 24/254 (9%)
Query: 241 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 300
NK +NRY +V +DHSR+ L D +DYINA+ +Y+ TQGPL T G F
Sbjct: 40 NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTCGHF 95
Query: 301 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 354
W MVWE +S +VM+ ++ E+ +KC QYWP + +T +T+ +D++ + Y
Sbjct: 96 WEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIK--SYY 153
Query: 355 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 414
+R + E REI +T WPD GVPE PA FL FL +VR ES +
Sbjct: 154 TVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSL 204
Query: 415 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 471
+ GP++VH SAG+GR+G F + D ++++ K +VDI + +R R ++QT
Sbjct: 205 SPEHGPVVVHSSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTA 264
Query: 472 DQYMFIHDALLEAV 485
DQ F + A++E
Sbjct: 265 DQLRFSYLAVIEGA 278
Score = 96.7 bits (239), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 92/199 (46%), Gaps = 40/199 (20%)
Query: 1304 NIRAEPSRFIS--ASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFIDGYRL 1361
+IR E S F A LP NK++NR + P + SR+ L E +DYINAS I
Sbjct: 22 DIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ----EDNDYINASLIKMEEA 77
Query: 1362 RSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------------- 1402
+ +YI TQGPL +T FW M+WE S VVML ++ E G
Sbjct: 78 QRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFED 137
Query: 1403 ---------------YVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQ 1447
Y +R+ ++ + +R + F WP+ GVP+S F++F+ +
Sbjct: 138 TNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFK 197
Query: 1448 VHKTKEQFGQDGPITVHCS 1466
V ++ + GP+ VH S
Sbjct: 198 VRESGSLSPEHGPVVVHSS 216
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 77/148 (52%), Gaps = 15/148 (10%)
Query: 1505 KCHQYWP--SERSIRYE------WFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQ 1556
KC QYWP E+ + +E + E I Y Y +R+ ++ + +R + F
Sbjct: 120 KCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSY----YTVRQLELENLTTQETREILHFH 175
Query: 1557 LIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVL 1613
WP+ GVP+S F++F+ +V ++ + GP+ VH SAG+GR+G F T +++
Sbjct: 176 YTTWPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHSSAGIGRSGTFCLADTCLLLM 235
Query: 1614 ERMQYEGVIDLFQTVRILRTQRPAMVQT 1641
++ + +D+ + + +R R ++QT
Sbjct: 236 DKRKDPSSVDIKKVLLEMRKFRMGLIQT 263
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/262 (22%), Positives = 111/262 (42%), Gaps = 45/262 (17%)
Query: 516 MELEFKKLS----------NIRAEPSRFIS--ASLPCNKHKNRLVHILPVESSRVCLTPV 563
ME EF+++ +IR E S F A LP NK++NR + P + SR+ L
Sbjct: 3 MEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQE 62
Query: 564 RGDGFID--FIGQVHKTKEQFGQDGPITVHCSRLAQHIENLKANDNLKFSQEYE--SIEP 619
D +I+ I + GP+ C + + K+ + ++ E S++
Sbjct: 63 DND-YINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKC 121
Query: 620 GQQFTWDHSSMEMNKAKNRYANVIAYD------------------HSRVIL-----STVD 656
Q + + + N +I+ D +R IL + D
Sbjct: 122 AQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHYTTWPD 181
Query: 657 -GIPGRDG-FIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVLERMQYE 711
G+P F++F+ +V ++ + GP+ VH SAG+GR+G F T +++++ +
Sbjct: 182 FGVPESPASFLNFLFKVRESGSLSPEHGPVVVHSSAGIGRSGTFCLADTCLLLMDKRKDP 241
Query: 712 GVIDLFQTVRILRTQRPAMVQT 733
+D+ + + +R R ++QT
Sbjct: 242 SSVDIKKVLLEMRKFRMGLIQT 263
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 1711 LLFILKSSLESSGVNLPVGPLIVHCSAGVGRTGCFIVID 1749
L F+ K ES ++ GP++VH SAG+GR+G F + D
Sbjct: 192 LNFLFKVR-ESGSLSPEHGPVVVHSSAGIGRSGTFCLAD 229
>pdb|1AAX|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Two Bis(Para-Phosphophenyl)methane (Bppm)
Molecules
Length = 321
Score = 168 bits (425), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/274 (34%), Positives = 149/274 (54%), Gaps = 26/274 (9%)
Query: 752 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 811
NK +NRY +V +DHSR+ L D +DYINA+ +Y+ TQGPL T G F
Sbjct: 40 NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTCGHF 95
Query: 812 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 865
W MVWE +S +VM+ ++ E+ +KC QYWP + +T +T+ +D++ + Y
Sbjct: 96 WEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIK--SYY 153
Query: 866 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 925
+R + E REI +T WPD GVPE PA FL FL +VR ES +
Sbjct: 154 TVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSL 204
Query: 926 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 982
+ GP++VH SAG+GR+G F + D ++++ K +VDI + +R R ++QT
Sbjct: 205 SPEHGPVVVHSSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTA 264
Query: 983 DQYMFIHDALLEAV--LCGNTEIPASSQMITRKD 1014
DQ F + A++E + G++ + + ++ +D
Sbjct: 265 DQLRFSYLAVIEGAKFIMGDSSVQDQWKELSHED 298
Score = 167 bits (423), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 93/254 (36%), Positives = 139/254 (54%), Gaps = 24/254 (9%)
Query: 241 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 300
NK +NRY +V +DHSR+ L D +DYINA+ +Y+ TQGPL T G F
Sbjct: 40 NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTCGHF 95
Query: 301 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 354
W MVWE +S +VM+ ++ E+ +KC QYWP + +T +T+ +D++ + Y
Sbjct: 96 WEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIK--SYY 153
Query: 355 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 414
+R + E REI +T WPD GVPE PA FL FL +VR ES +
Sbjct: 154 TVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSL 204
Query: 415 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 471
+ GP++VH SAG+GR+G F + D ++++ K +VDI + +R R ++QT
Sbjct: 205 SPEHGPVVVHSSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTA 264
Query: 472 DQYMFIHDALLEAV 485
DQ F + A++E
Sbjct: 265 DQLRFSYLAVIEGA 278
Score = 96.7 bits (239), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 92/199 (46%), Gaps = 40/199 (20%)
Query: 1304 NIRAEPSRFIS--ASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFIDGYRL 1361
+IR E S F A LP NK++NR + P + SR+ L E +DYINAS I
Sbjct: 22 DIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ----EDNDYINASLIKMEEA 77
Query: 1362 RSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------------- 1402
+ +YI TQGPL +T FW M+WE S VVML ++ E G
Sbjct: 78 QRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFED 137
Query: 1403 ---------------YVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQ 1447
Y +R+ ++ + +R + F WP+ GVP+S F++F+ +
Sbjct: 138 TNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFK 197
Query: 1448 VHKTKEQFGQDGPITVHCS 1466
V ++ + GP+ VH S
Sbjct: 198 VRESGSLSPEHGPVVVHSS 216
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 77/148 (52%), Gaps = 15/148 (10%)
Query: 1505 KCHQYWP--SERSIRYE------WFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQ 1556
KC QYWP E+ + +E + E I Y Y +R+ ++ + +R + F
Sbjct: 120 KCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSY----YTVRQLELENLTTQETREILHFH 175
Query: 1557 LIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVL 1613
WP+ GVP+S F++F+ +V ++ + GP+ VH SAG+GR+G F T +++
Sbjct: 176 YTTWPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHSSAGIGRSGTFCLADTCLLLM 235
Query: 1614 ERMQYEGVIDLFQTVRILRTQRPAMVQT 1641
++ + +D+ + + +R R ++QT
Sbjct: 236 DKRKDPSSVDIKKVLLEMRKFRMGLIQT 263
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/262 (22%), Positives = 111/262 (42%), Gaps = 45/262 (17%)
Query: 516 MELEFKKLS----------NIRAEPSRFIS--ASLPCNKHKNRLVHILPVESSRVCLTPV 563
ME EF+++ +IR E S F A LP NK++NR + P + SR+ L
Sbjct: 3 MEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQE 62
Query: 564 RGDGFID--FIGQVHKTKEQFGQDGPITVHCSRLAQHIENLKANDNLKFSQEYE--SIEP 619
D +I+ I + GP+ C + + K+ + ++ E S++
Sbjct: 63 DND-YINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKC 121
Query: 620 GQQFTWDHSSMEMNKAKNRYANVIAYD------------------HSRVIL-----STVD 656
Q + + + N +I+ D +R IL + D
Sbjct: 122 AQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHYTTWPD 181
Query: 657 -GIPGRDG-FIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVLERMQYE 711
G+P F++F+ +V ++ + GP+ VH SAG+GR+G F T +++++ +
Sbjct: 182 FGVPESPASFLNFLFKVRESGSLSPEHGPVVVHSSAGIGRSGTFCLADTCLLLMDKRKDP 241
Query: 712 GVIDLFQTVRILRTQRPAMVQT 733
+D+ + + +R R ++QT
Sbjct: 242 SSVDIKKVLLEMRKFRMGLIQT 263
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 1711 LLFILKSSLESSGVNLPVGPLIVHCSAGVGRTGCFIVID 1749
L F+ K ES ++ GP++VH SAG+GR+G F + D
Sbjct: 192 LNFLFKVR-ESGSLSPEHGPVVVHSSAGIGRSGTFCLAD 229
>pdb|3QKP|A Chain A, Protein Tyrosine Phosphatase 1b - Apo W179f Mutant With Open
Wpd-Loop
pdb|3QKQ|A Chain A, Protein Tyrosine Phosphatase 1b - W179f Mutant Bound With
Vanadate
Length = 321
Score = 168 bits (425), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/274 (34%), Positives = 150/274 (54%), Gaps = 26/274 (9%)
Query: 752 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 811
NK +NRY +V +DHSR+ L D +DYINA+ +Y+ TQGPL T G F
Sbjct: 40 NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTCGHF 95
Query: 812 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 865
W MVWE +S +VM+ ++ E+ +KC QYWP + +T +T+ +D++ + Y
Sbjct: 96 WEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIK--SYY 153
Query: 866 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 925
+R + E REI +T +PD GVPE PA FL FL +VR ES +
Sbjct: 154 TVRQLELENLTTQETREILHFHYTTFPDFGVPESPASFLNFLFKVR---------ESGSL 204
Query: 926 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 982
+ GP++VHCSAG+GR+G F + D ++++ K +VDI + +R R ++QT
Sbjct: 205 SPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTA 264
Query: 983 DQYMFIHDALLEAV--LCGNTEIPASSQMITRKD 1014
DQ F + A++E + G++ + + ++ +D
Sbjct: 265 DQLRFSYLAVIEGAKFIMGDSSVQDQWKELSHED 298
Score = 167 bits (423), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 93/254 (36%), Positives = 140/254 (55%), Gaps = 24/254 (9%)
Query: 241 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 300
NK +NRY +V +DHSR+ L D +DYINA+ +Y+ TQGPL T G F
Sbjct: 40 NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTCGHF 95
Query: 301 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 354
W MVWE +S +VM+ ++ E+ +KC QYWP + +T +T+ +D++ + Y
Sbjct: 96 WEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIK--SYY 153
Query: 355 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 414
+R + E REI +T +PD GVPE PA FL FL +VR ES +
Sbjct: 154 TVRQLELENLTTQETREILHFHYTTFPDFGVPESPASFLNFLFKVR---------ESGSL 204
Query: 415 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 471
+ GP++VHCSAG+GR+G F + D ++++ K +VDI + +R R ++QT
Sbjct: 205 SPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTA 264
Query: 472 DQYMFIHDALLEAV 485
DQ F + A++E
Sbjct: 265 DQLRFSYLAVIEGA 278
Score = 97.1 bits (240), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 93/199 (46%), Gaps = 40/199 (20%)
Query: 1304 NIRAEPSRFIS--ASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFIDGYRL 1361
+IR E S F A LP NK++NR + P + SR+ L E +DYINAS I
Sbjct: 22 DIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ----EDNDYINASLIKMEEA 77
Query: 1362 RSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------------- 1402
+ +YI TQGPL +T FW M+WE S VVML ++ E G
Sbjct: 78 QRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFED 137
Query: 1403 ---------------YVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQ 1447
Y +R+ ++ + +R + F +P+ GVP+S F++F+ +
Sbjct: 138 TNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHYTTFPDFGVPESPASFLNFLFK 197
Query: 1448 VHKTKEQFGQDGPITVHCS 1466
V ++ + GP+ VHCS
Sbjct: 198 VRESGSLSPEHGPVVVHCS 216
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 78/148 (52%), Gaps = 15/148 (10%)
Query: 1505 KCHQYWP--SERSIRYE------WFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQ 1556
KC QYWP E+ + +E + E I Y Y +R+ ++ + +R + F
Sbjct: 120 KCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSY----YTVRQLELENLTTQETREILHFH 175
Query: 1557 LIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVL 1613
+P+ GVP+S F++F+ +V ++ + GP+ VHCSAG+GR+G F T +++
Sbjct: 176 YTTFPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLM 235
Query: 1614 ERMQYEGVIDLFQTVRILRTQRPAMVQT 1641
++ + +D+ + + +R R ++QT
Sbjct: 236 DKRKDPSSVDIKKVLLEMRKFRMGLIQT 263
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 112/262 (42%), Gaps = 45/262 (17%)
Query: 516 MELEFKKLS----------NIRAEPSRFIS--ASLPCNKHKNRLVHILPVESSRVCLTPV 563
ME EF+++ +IR E S F A LP NK++NR + P + SR+ L
Sbjct: 3 MEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQE 62
Query: 564 RGDGFID--FIGQVHKTKEQFGQDGPITVHCSRLAQHIENLKANDNLKFSQEYE--SIEP 619
D +I+ I + GP+ C + + K+ + ++ E S++
Sbjct: 63 DND-YINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKC 121
Query: 620 GQQFTWDHSSMEMNKAKNRYANVIAYD------------------HSRVIL----STVD- 656
Q + + + N +I+ D +R IL +T
Sbjct: 122 AQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHYTTFPD 181
Query: 657 -GIPGRDG-FIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVLERMQYE 711
G+P F++F+ +V ++ + GP+ VHCSAG+GR+G F T +++++ +
Sbjct: 182 FGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDP 241
Query: 712 GVIDLFQTVRILRTQRPAMVQT 733
+D+ + + +R R ++QT
Sbjct: 242 SSVDIKKVLLEMRKFRMGLIQT 263
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 1711 LLFILKSSLESSGVNLPVGPLIVHCSAGVGRTGCFIVID 1749
L F+ K ES ++ GP++VHCSAG+GR+G F + D
Sbjct: 192 LNFLFKVR-ESGSLSPEHGPVVVHCSAGIGRSGTFCLAD 229
>pdb|1OEO|X Chain X, Ptp1b With The Catalytic Cysteine Oxidized To Sulfonic Acid
pdb|1OET|A Chain A, Oxidation State Of Protein Tyrosine Phosphatase 1b
pdb|1OEU|A Chain A, Oxidation State Of Protein Tyrosine Phosphatase 1b
pdb|1OEV|A Chain A, Oxidation State Of Protein Tyrosine Phosphatase 1b
Length = 321
Score = 167 bits (424), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/274 (34%), Positives = 149/274 (54%), Gaps = 26/274 (9%)
Query: 752 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 811
NK +NRY +V +DHSR+ L D +DYINA+ +Y+ TQGPL T G F
Sbjct: 40 NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTCGHF 95
Query: 812 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 865
W MVWE +S +VM+ ++ E+ +KC QYWP + +T +T+ +D++ + Y
Sbjct: 96 WEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIK--SYY 153
Query: 866 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 925
+R + E REI +T WPD GVPE PA FL FL +VR ES +
Sbjct: 154 TVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSL 204
Query: 926 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 982
+ GP++VH SAG+GR+G F + D ++++ K +VDI + +R R ++QT
Sbjct: 205 SPEHGPVVVHXSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTA 264
Query: 983 DQYMFIHDALLEAV--LCGNTEIPASSQMITRKD 1014
DQ F + A++E + G++ + + ++ +D
Sbjct: 265 DQLRFSYLAVIEGAKFIMGDSSVQDQWKELSHED 298
Score = 167 bits (422), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 93/254 (36%), Positives = 139/254 (54%), Gaps = 24/254 (9%)
Query: 241 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 300
NK +NRY +V +DHSR+ L D +DYINA+ +Y+ TQGPL T G F
Sbjct: 40 NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTCGHF 95
Query: 301 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 354
W MVWE +S +VM+ ++ E+ +KC QYWP + +T +T+ +D++ + Y
Sbjct: 96 WEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIK--SYY 153
Query: 355 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 414
+R + E REI +T WPD GVPE PA FL FL +VR ES +
Sbjct: 154 TVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSL 204
Query: 415 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 471
+ GP++VH SAG+GR+G F + D ++++ K +VDI + +R R ++QT
Sbjct: 205 SPEHGPVVVHXSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTA 264
Query: 472 DQYMFIHDALLEAV 485
DQ F + A++E
Sbjct: 265 DQLRFSYLAVIEGA 278
Score = 96.3 bits (238), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 92/199 (46%), Gaps = 40/199 (20%)
Query: 1304 NIRAEPSRFIS--ASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFIDGYRL 1361
+IR E S F A LP NK++NR + P + SR+ L E +DYINAS I
Sbjct: 22 DIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ----EDNDYINASLIKMEEA 77
Query: 1362 RSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------------- 1402
+ +YI TQGPL +T FW M+WE S VVML ++ E G
Sbjct: 78 QRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFED 137
Query: 1403 ---------------YVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQ 1447
Y +R+ ++ + +R + F WP+ GVP+S F++F+ +
Sbjct: 138 TNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFK 197
Query: 1448 VHKTKEQFGQDGPITVHCS 1466
V ++ + GP+ VH S
Sbjct: 198 VRESGSLSPEHGPVVVHXS 216
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 77/148 (52%), Gaps = 15/148 (10%)
Query: 1505 KCHQYWP--SERSIRYE------WFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQ 1556
KC QYWP E+ + +E + E I Y Y +R+ ++ + +R + F
Sbjct: 120 KCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSY----YTVRQLELENLTTQETREILHFH 175
Query: 1557 LIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVL 1613
WP+ GVP+S F++F+ +V ++ + GP+ VH SAG+GR+G F T +++
Sbjct: 176 YTTWPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHXSAGIGRSGTFCLADTCLLLM 235
Query: 1614 ERMQYEGVIDLFQTVRILRTQRPAMVQT 1641
++ + +D+ + + +R R ++QT
Sbjct: 236 DKRKDPSSVDIKKVLLEMRKFRMGLIQT 263
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/262 (22%), Positives = 111/262 (42%), Gaps = 45/262 (17%)
Query: 516 MELEFKKLS----------NIRAEPSRFIS--ASLPCNKHKNRLVHILPVESSRVCLTPV 563
ME EF+++ +IR E S F A LP NK++NR + P + SR+ L
Sbjct: 3 MEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQE 62
Query: 564 RGDGFID--FIGQVHKTKEQFGQDGPITVHCSRLAQHIENLKANDNLKFSQEYE--SIEP 619
D +I+ I + GP+ C + + K+ + ++ E S++
Sbjct: 63 DND-YINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKC 121
Query: 620 GQQFTWDHSSMEMNKAKNRYANVIAYD------------------HSRVIL-----STVD 656
Q + + + N +I+ D +R IL + D
Sbjct: 122 AQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHYTTWPD 181
Query: 657 -GIPGRDG-FIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVLERMQYE 711
G+P F++F+ +V ++ + GP+ VH SAG+GR+G F T +++++ +
Sbjct: 182 FGVPESPASFLNFLFKVRESGSLSPEHGPVVVHXSAGIGRSGTFCLADTCLLLMDKRKDP 241
Query: 712 GVIDLFQTVRILRTQRPAMVQT 733
+D+ + + +R R ++QT
Sbjct: 242 SSVDIKKVLLEMRKFRMGLIQT 263
Score = 35.8 bits (81), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 1711 LLFILKSSLESSGVNLPVGPLIVHCSAGVGRTGCFIVID 1749
L F+ K ES ++ GP++VH SAG+GR+G F + D
Sbjct: 192 LNFLFKVR-ESGSLSPEHGPVVVHXSAGIGRSGTFCLAD 229
>pdb|3EU0|A Chain A, Crystal Structure Of The S-Nitrosylated Cys215 Of Ptp1b
Length = 327
Score = 167 bits (424), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/274 (34%), Positives = 149/274 (54%), Gaps = 26/274 (9%)
Query: 752 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 811
NK +NRY +V +DHSR+ L D +DYINA+ +Y+ TQGPL T G F
Sbjct: 46 NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTCGHF 101
Query: 812 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 865
W MVWE +S +VM+ ++ E+ +KC QYWP + +T +T+ +D++ + Y
Sbjct: 102 WEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIK--SYY 159
Query: 866 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 925
+R + E REI +T WPD GVPE PA FL FL +VR ES +
Sbjct: 160 TVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSL 210
Query: 926 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 982
+ GP++VH SAG+GR+G F + D ++++ K +VDI + +R R ++QT
Sbjct: 211 SPEHGPVVVHXSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTA 270
Query: 983 DQYMFIHDALLEAV--LCGNTEIPASSQMITRKD 1014
DQ F + A++E + G++ + + ++ +D
Sbjct: 271 DQLRFSYLAVIEGAKFIMGDSSVQDQWKELSHED 304
Score = 167 bits (422), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 93/254 (36%), Positives = 139/254 (54%), Gaps = 24/254 (9%)
Query: 241 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 300
NK +NRY +V +DHSR+ L D +DYINA+ +Y+ TQGPL T G F
Sbjct: 46 NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTCGHF 101
Query: 301 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 354
W MVWE +S +VM+ ++ E+ +KC QYWP + +T +T+ +D++ + Y
Sbjct: 102 WEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIK--SYY 159
Query: 355 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 414
+R + E REI +T WPD GVPE PA FL FL +VR ES +
Sbjct: 160 TVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSL 210
Query: 415 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 471
+ GP++VH SAG+GR+G F + D ++++ K +VDI + +R R ++QT
Sbjct: 211 SPEHGPVVVHXSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTA 270
Query: 472 DQYMFIHDALLEAV 485
DQ F + A++E
Sbjct: 271 DQLRFSYLAVIEGA 284
Score = 96.3 bits (238), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 92/199 (46%), Gaps = 40/199 (20%)
Query: 1304 NIRAEPSRFIS--ASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFIDGYRL 1361
+IR E S F A LP NK++NR + P + SR+ L E +DYINAS I
Sbjct: 28 DIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ----EDNDYINASLIKMEEA 83
Query: 1362 RSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------------- 1402
+ +YI TQGPL +T FW M+WE S VVML ++ E G
Sbjct: 84 QRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFED 143
Query: 1403 ---------------YVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQ 1447
Y +R+ ++ + +R + F WP+ GVP+S F++F+ +
Sbjct: 144 TNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFK 203
Query: 1448 VHKTKEQFGQDGPITVHCS 1466
V ++ + GP+ VH S
Sbjct: 204 VRESGSLSPEHGPVVVHXS 222
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 77/148 (52%), Gaps = 15/148 (10%)
Query: 1505 KCHQYWP--SERSIRYE------WFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQ 1556
KC QYWP E+ + +E + E I Y Y +R+ ++ + +R + F
Sbjct: 126 KCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSY----YTVRQLELENLTTQETREILHFH 181
Query: 1557 LIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVL 1613
WP+ GVP+S F++F+ +V ++ + GP+ VH SAG+GR+G F T +++
Sbjct: 182 YTTWPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHXSAGIGRSGTFCLADTCLLLM 241
Query: 1614 ERMQYEGVIDLFQTVRILRTQRPAMVQT 1641
++ + +D+ + + +R R ++QT
Sbjct: 242 DKRKDPSSVDIKKVLLEMRKFRMGLIQT 269
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/262 (22%), Positives = 111/262 (42%), Gaps = 45/262 (17%)
Query: 516 MELEFKKLS----------NIRAEPSRFIS--ASLPCNKHKNRLVHILPVESSRVCLTPV 563
ME EF+++ +IR E S F A LP NK++NR + P + SR+ L
Sbjct: 9 MEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQE 68
Query: 564 RGDGFID--FIGQVHKTKEQFGQDGPITVHCSRLAQHIENLKANDNLKFSQEYE--SIEP 619
D +I+ I + GP+ C + + K+ + ++ E S++
Sbjct: 69 DND-YINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKC 127
Query: 620 GQQFTWDHSSMEMNKAKNRYANVIAYD------------------HSRVIL-----STVD 656
Q + + + N +I+ D +R IL + D
Sbjct: 128 AQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHYTTWPD 187
Query: 657 -GIPGRDG-FIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVLERMQYE 711
G+P F++F+ +V ++ + GP+ VH SAG+GR+G F T +++++ +
Sbjct: 188 FGVPESPASFLNFLFKVRESGSLSPEHGPVVVHXSAGIGRSGTFCLADTCLLLMDKRKDP 247
Query: 712 GVIDLFQTVRILRTQRPAMVQT 733
+D+ + + +R R ++QT
Sbjct: 248 SSVDIKKVLLEMRKFRMGLIQT 269
Score = 35.8 bits (81), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 1711 LLFILKSSLESSGVNLPVGPLIVHCSAGVGRTGCFIVID 1749
L F+ K ES ++ GP++VH SAG+GR+G F + D
Sbjct: 198 LNFLFKVR-ESGSLSPEHGPVVVHXSAGIGRSGTFCLAD 235
>pdb|1PTV|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Phosphotyrosine
Length = 321
Score = 167 bits (424), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/274 (34%), Positives = 148/274 (54%), Gaps = 26/274 (9%)
Query: 752 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 811
NK +NRY +V +DHSR+ L D +DYINA+ +Y+ TQGPL T G F
Sbjct: 40 NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTCGHF 95
Query: 812 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 865
W MVWE +S +VM+ ++ E+ +KC QYWP + +T +T+ +D++ Y
Sbjct: 96 WEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIK--TYY 153
Query: 866 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 925
+R + E REI +T WPD GVPE PA FL FL +VR ES +
Sbjct: 154 TVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSL 204
Query: 926 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 982
+ GP++VH SAG+GR+G F + D ++++ K +VDI + +R R ++QT
Sbjct: 205 SPEHGPVVVHSSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLDMRKFRMGLIQTA 264
Query: 983 DQYMFIHDALLEAV--LCGNTEIPASSQMITRKD 1014
DQ F + A++E + G++ + + ++ +D
Sbjct: 265 DQLRFSYLAVIEGAKFIMGDSSVQDQWKELSHED 298
Score = 167 bits (422), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 93/254 (36%), Positives = 138/254 (54%), Gaps = 24/254 (9%)
Query: 241 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 300
NK +NRY +V +DHSR+ L D +DYINA+ +Y+ TQGPL T G F
Sbjct: 40 NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTCGHF 95
Query: 301 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 354
W MVWE +S +VM+ ++ E+ +KC QYWP + +T +T+ +D++ Y
Sbjct: 96 WEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIK--TYY 153
Query: 355 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 414
+R + E REI +T WPD GVPE PA FL FL +VR ES +
Sbjct: 154 TVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSL 204
Query: 415 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 471
+ GP++VH SAG+GR+G F + D ++++ K +VDI + +R R ++QT
Sbjct: 205 SPEHGPVVVHSSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLDMRKFRMGLIQTA 264
Query: 472 DQYMFIHDALLEAV 485
DQ F + A++E
Sbjct: 265 DQLRFSYLAVIEGA 278
Score = 96.7 bits (239), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 92/199 (46%), Gaps = 40/199 (20%)
Query: 1304 NIRAEPSRFIS--ASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFIDGYRL 1361
+IR E S F A LP NK++NR + P + SR+ L E +DYINAS I
Sbjct: 22 DIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ----EDNDYINASLIKMEEA 77
Query: 1362 RSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------------- 1402
+ +YI TQGPL +T FW M+WE S VVML ++ E G
Sbjct: 78 QRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFED 137
Query: 1403 ---------------YVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQ 1447
Y +R+ ++ + +R + F WP+ GVP+S F++F+ +
Sbjct: 138 TNLKLTLISEDIKTYYTVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFK 197
Query: 1448 VHKTKEQFGQDGPITVHCS 1466
V ++ + GP+ VH S
Sbjct: 198 VRESGSLSPEHGPVVVHSS 216
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 77/148 (52%), Gaps = 15/148 (10%)
Query: 1505 KCHQYWP--SERSIRYE------WFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQ 1556
KC QYWP E+ + +E + E I Y Y +R+ ++ + +R + F
Sbjct: 120 KCAQYWPQKEEKEMIFEDTNLKLTLISEDIKTY----YTVRQLELENLTTQETREILHFH 175
Query: 1557 LIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVL 1613
WP+ GVP+S F++F+ +V ++ + GP+ VH SAG+GR+G F T +++
Sbjct: 176 YTTWPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHSSAGIGRSGTFCLADTCLLLM 235
Query: 1614 ERMQYEGVIDLFQTVRILRTQRPAMVQT 1641
++ + +D+ + + +R R ++QT
Sbjct: 236 DKRKDPSSVDIKKVLLDMRKFRMGLIQT 263
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/262 (22%), Positives = 111/262 (42%), Gaps = 45/262 (17%)
Query: 516 MELEFKKLS----------NIRAEPSRFIS--ASLPCNKHKNRLVHILPVESSRVCLTPV 563
ME EF+++ +IR E S F A LP NK++NR + P + SR+ L
Sbjct: 3 MEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQE 62
Query: 564 RGDGFID--FIGQVHKTKEQFGQDGPITVHCSRLAQHIENLKANDNLKFSQEYE--SIEP 619
D +I+ I + GP+ C + + K+ + ++ E S++
Sbjct: 63 DND-YINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKC 121
Query: 620 GQQFTWDHSSMEMNKAKNRYANVIAYD------------------HSRVIL-----STVD 656
Q + + + N +I+ D +R IL + D
Sbjct: 122 AQYWPQKEEKEMIFEDTNLKLTLISEDIKTYYTVRQLELENLTTQETREILHFHYTTWPD 181
Query: 657 -GIPGRDG-FIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVLERMQYE 711
G+P F++F+ +V ++ + GP+ VH SAG+GR+G F T +++++ +
Sbjct: 182 FGVPESPASFLNFLFKVRESGSLSPEHGPVVVHSSAGIGRSGTFCLADTCLLLMDKRKDP 241
Query: 712 GVIDLFQTVRILRTQRPAMVQT 733
+D+ + + +R R ++QT
Sbjct: 242 SSVDIKKVLLDMRKFRMGLIQT 263
Score = 36.2 bits (82), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 1711 LLFILKSSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDA 1750
L F+ K ES ++ GP++VH SAG+GR+G F + D
Sbjct: 192 LNFLFKVR-ESGSLSPEHGPVVVHSSAGIGRSGTFCLADT 230
>pdb|1PTU|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Phosphotyrosine-Containing Hexa-Peptide
(Dadepyl-Nh2)
pdb|1PTT|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Phosphotyrosine-Containing Tetra-Peptide
(Ac-Depyl-Nh2)
Length = 321
Score = 167 bits (424), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/274 (34%), Positives = 148/274 (54%), Gaps = 26/274 (9%)
Query: 752 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 811
NK +NRY +V +DHSR+ L D +DYINA+ +Y+ TQGPL T G F
Sbjct: 40 NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTCGHF 95
Query: 812 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 865
W MVWE +S +VM+ ++ E+ +KC QYWP + +T +T+ +D++ Y
Sbjct: 96 WEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIK--TYY 153
Query: 866 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 925
+R + E REI +T WPD GVPE PA FL FL +VR ES +
Sbjct: 154 TVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSL 204
Query: 926 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 982
+ GP++VH SAG+GR+G F + D ++++ K +VDI + +R R ++QT
Sbjct: 205 SPEHGPVVVHSSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTA 264
Query: 983 DQYMFIHDALLEAV--LCGNTEIPASSQMITRKD 1014
DQ F + A++E + G++ + + ++ +D
Sbjct: 265 DQLRFSYLAVIEGAKFIMGDSSVQDQWKELSHED 298
Score = 167 bits (422), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 93/254 (36%), Positives = 138/254 (54%), Gaps = 24/254 (9%)
Query: 241 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 300
NK +NRY +V +DHSR+ L D +DYINA+ +Y+ TQGPL T G F
Sbjct: 40 NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTCGHF 95
Query: 301 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 354
W MVWE +S +VM+ ++ E+ +KC QYWP + +T +T+ +D++ Y
Sbjct: 96 WEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIK--TYY 153
Query: 355 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 414
+R + E REI +T WPD GVPE PA FL FL +VR ES +
Sbjct: 154 TVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSL 204
Query: 415 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 471
+ GP++VH SAG+GR+G F + D ++++ K +VDI + +R R ++QT
Sbjct: 205 SPEHGPVVVHSSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTA 264
Query: 472 DQYMFIHDALLEAV 485
DQ F + A++E
Sbjct: 265 DQLRFSYLAVIEGA 278
Score = 96.7 bits (239), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 92/199 (46%), Gaps = 40/199 (20%)
Query: 1304 NIRAEPSRFIS--ASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFIDGYRL 1361
+IR E S F A LP NK++NR + P + SR+ L E +DYINAS I
Sbjct: 22 DIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ----EDNDYINASLIKMEEA 77
Query: 1362 RSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------------- 1402
+ +YI TQGPL +T FW M+WE S VVML ++ E G
Sbjct: 78 QRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFED 137
Query: 1403 ---------------YVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQ 1447
Y +R+ ++ + +R + F WP+ GVP+S F++F+ +
Sbjct: 138 TNLKLTLISEDIKTYYTVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFK 197
Query: 1448 VHKTKEQFGQDGPITVHCS 1466
V ++ + GP+ VH S
Sbjct: 198 VRESGSLSPEHGPVVVHSS 216
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 77/148 (52%), Gaps = 15/148 (10%)
Query: 1505 KCHQYWP--SERSIRYE------WFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQ 1556
KC QYWP E+ + +E + E I Y Y +R+ ++ + +R + F
Sbjct: 120 KCAQYWPQKEEKEMIFEDTNLKLTLISEDIKTY----YTVRQLELENLTTQETREILHFH 175
Query: 1557 LIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVL 1613
WP+ GVP+S F++F+ +V ++ + GP+ VH SAG+GR+G F T +++
Sbjct: 176 YTTWPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHSSAGIGRSGTFCLADTCLLLM 235
Query: 1614 ERMQYEGVIDLFQTVRILRTQRPAMVQT 1641
++ + +D+ + + +R R ++QT
Sbjct: 236 DKRKDPSSVDIKKVLLEMRKFRMGLIQT 263
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/262 (22%), Positives = 111/262 (42%), Gaps = 45/262 (17%)
Query: 516 MELEFKKLS----------NIRAEPSRFIS--ASLPCNKHKNRLVHILPVESSRVCLTPV 563
ME EF+++ +IR E S F A LP NK++NR + P + SR+ L
Sbjct: 3 MEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQE 62
Query: 564 RGDGFID--FIGQVHKTKEQFGQDGPITVHCSRLAQHIENLKANDNLKFSQEYE--SIEP 619
D +I+ I + GP+ C + + K+ + ++ E S++
Sbjct: 63 DND-YINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKC 121
Query: 620 GQQFTWDHSSMEMNKAKNRYANVIAYD------------------HSRVIL-----STVD 656
Q + + + N +I+ D +R IL + D
Sbjct: 122 AQYWPQKEEKEMIFEDTNLKLTLISEDIKTYYTVRQLELENLTTQETREILHFHYTTWPD 181
Query: 657 -GIPGRDG-FIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVLERMQYE 711
G+P F++F+ +V ++ + GP+ VH SAG+GR+G F T +++++ +
Sbjct: 182 FGVPESPASFLNFLFKVRESGSLSPEHGPVVVHSSAGIGRSGTFCLADTCLLLMDKRKDP 241
Query: 712 GVIDLFQTVRILRTQRPAMVQT 733
+D+ + + +R R ++QT
Sbjct: 242 SSVDIKKVLLEMRKFRMGLIQT 263
Score = 36.2 bits (82), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 1711 LLFILKSSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDA 1750
L F+ K ES ++ GP++VH SAG+GR+G F + D
Sbjct: 192 LNFLFKVR-ESGSLSPEHGPVVVHSSAGIGRSGTFCLADT 230
>pdb|1I57|A Chain A, Crystal Structure Of Apo Human Ptp1b (C215s) Mutant
Length = 310
Score = 167 bits (424), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 95/274 (34%), Positives = 149/274 (54%), Gaps = 26/274 (9%)
Query: 752 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 811
NK +NRY +V +DHSR+ L D +DYINA+ +Y+ TQGPL T G F
Sbjct: 52 NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTCGHF 107
Query: 812 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 865
W MVWE +S +VM+ ++ E+ +KC QYWP + +T +T+ +D++ + Y
Sbjct: 108 WEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIK--SYY 165
Query: 866 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 925
+R + E REI +T WPD GVPE PA FL FL +VR ES +
Sbjct: 166 TVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSL 216
Query: 926 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 982
+ GP++VH SAG+GR+G F + D ++++ K +VDI + +R R ++QT
Sbjct: 217 SPEHGPVVVHSSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTA 276
Query: 983 DQYMFIHDALLEAV--LCGNTEIPASSQMITRKD 1014
DQ F + A++E + G++ + + ++ +D
Sbjct: 277 DQLRFSYLAVIEGAKFIMGDSSVQDQWKELSHED 310
Score = 166 bits (421), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 93/254 (36%), Positives = 139/254 (54%), Gaps = 24/254 (9%)
Query: 241 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 300
NK +NRY +V +DHSR+ L D +DYINA+ +Y+ TQGPL T G F
Sbjct: 52 NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTCGHF 107
Query: 301 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 354
W MVWE +S +VM+ ++ E+ +KC QYWP + +T +T+ +D++ + Y
Sbjct: 108 WEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIK--SYY 165
Query: 355 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 414
+R + E REI +T WPD GVPE PA FL FL +VR ES +
Sbjct: 166 TVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSL 216
Query: 415 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 471
+ GP++VH SAG+GR+G F + D ++++ K +VDI + +R R ++QT
Sbjct: 217 SPEHGPVVVHSSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTA 276
Query: 472 DQYMFIHDALLEAV 485
DQ F + A++E
Sbjct: 277 DQLRFSYLAVIEGA 290
Score = 96.3 bits (238), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 92/199 (46%), Gaps = 40/199 (20%)
Query: 1304 NIRAEPSRFIS--ASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFIDGYRL 1361
+IR E S F A LP NK++NR + P + SR+ L E +DYINAS I
Sbjct: 34 DIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ----EDNDYINASLIKMEEA 89
Query: 1362 RSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------------- 1402
+ +YI TQGPL +T FW M+WE S VVML ++ E G
Sbjct: 90 QRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFED 149
Query: 1403 ---------------YVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQ 1447
Y +R+ ++ + +R + F WP+ GVP+S F++F+ +
Sbjct: 150 TNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFK 209
Query: 1448 VHKTKEQFGQDGPITVHCS 1466
V ++ + GP+ VH S
Sbjct: 210 VRESGSLSPEHGPVVVHSS 228
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 77/148 (52%), Gaps = 15/148 (10%)
Query: 1505 KCHQYWP--SERSIRYE------WFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQ 1556
KC QYWP E+ + +E + E I Y Y +R+ ++ + +R + F
Sbjct: 132 KCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSY----YTVRQLELENLTTQETREILHFH 187
Query: 1557 LIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVL 1613
WP+ GVP+S F++F+ +V ++ + GP+ VH SAG+GR+G F T +++
Sbjct: 188 YTTWPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHSSAGIGRSGTFCLADTCLLLM 247
Query: 1614 ERMQYEGVIDLFQTVRILRTQRPAMVQT 1641
++ + +D+ + + +R R ++QT
Sbjct: 248 DKRKDPSSVDIKKVLLEMRKFRMGLIQT 275
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 104/243 (42%), Gaps = 35/243 (14%)
Query: 525 NIRAEPSRFIS--ASLPCNKHKNRLVHILPVESSRVCLTPVRGDGFID--FIGQVHKTKE 580
+IR E S F A LP NK++NR + P + SR+ L D +I+ I +
Sbjct: 34 DIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQEDND-YINASLIKMEEAQRS 92
Query: 581 QFGQDGPITVHCSRLAQHIENLKANDNLKFSQEYE--SIEPGQQFTWDHSSMEMNKAKNR 638
GP+ C + + K+ + ++ E S++ Q + + + N
Sbjct: 93 YILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNL 152
Query: 639 YANVIAYD------------------HSRVIL-----STVD-GIPGR-DGFIDFIGQVHK 673
+I+ D +R IL + D G+P F++F+ +V +
Sbjct: 153 KLTLISEDIKSYYTVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRE 212
Query: 674 TKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVLERMQYEGVIDLFQTVRILRTQRPAM 730
+ + GP+ VH SAG+GR+G F T +++++ + +D+ + + +R R +
Sbjct: 213 SGSLSPEHGPVVVHSSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGL 272
Query: 731 VQT 733
+QT
Sbjct: 273 IQT 275
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 1711 LLFILKSSLESSGVNLPVGPLIVHCSAGVGRTGCFIVID 1749
L F+ K ES ++ GP++VH SAG+GR+G F + D
Sbjct: 204 LNFLFKVR-ESGSLSPEHGPVVVHSSAGIGRSGTFCLAD 241
>pdb|3A5K|A Chain A, Crystal Structure Of Protein-Tyrosine Phosphatase 1b
Length = 304
Score = 167 bits (424), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 95/274 (34%), Positives = 149/274 (54%), Gaps = 26/274 (9%)
Query: 752 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 811
NK +NRY +V +DHSR+ L D +DYINA+ +Y+ TQGPL T G F
Sbjct: 46 NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTCGHF 101
Query: 812 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 865
W MVWE +S +VM+ ++ E+ +K QYWP + +T +T+ +D++ + Y
Sbjct: 102 WEMVWEQKSRGVVMLNRVMEKGSLKWAQYWPQKEEKEMIFEDTNLKLTLISEDIK--SYY 159
Query: 866 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 925
+R + E REI +T WPD GVPE PA FL FL +VR ES +
Sbjct: 160 TVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSL 210
Query: 926 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 982
+ GP++VHCSAG+GR+G F + D ++++ K +VDI + +R R ++QT
Sbjct: 211 SPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTA 270
Query: 983 DQYMFIHDALLEAV--LCGNTEIPASSQMITRKD 1014
DQ F + A++E + G++ + + ++ +D
Sbjct: 271 DQLRFSYLAVIEGAKFIMGDSSVQDQWKELSHED 304
Score = 166 bits (421), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 93/254 (36%), Positives = 139/254 (54%), Gaps = 24/254 (9%)
Query: 241 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 300
NK +NRY +V +DHSR+ L D +DYINA+ +Y+ TQGPL T G F
Sbjct: 46 NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTCGHF 101
Query: 301 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 354
W MVWE +S +VM+ ++ E+ +K QYWP + +T +T+ +D++ + Y
Sbjct: 102 WEMVWEQKSRGVVMLNRVMEKGSLKWAQYWPQKEEKEMIFEDTNLKLTLISEDIK--SYY 159
Query: 355 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 414
+R + E REI +T WPD GVPE PA FL FL +VR ES +
Sbjct: 160 TVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSL 210
Query: 415 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 471
+ GP++VHCSAG+GR+G F + D ++++ K +VDI + +R R ++QT
Sbjct: 211 SPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTA 270
Query: 472 DQYMFIHDALLEAV 485
DQ F + A++E
Sbjct: 271 DQLRFSYLAVIEGA 284
Score = 100 bits (248), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 93/199 (46%), Gaps = 40/199 (20%)
Query: 1304 NIRAEPSRFIS--ASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFIDGYRL 1361
+IR E S F A LP NK++NR + P + SR+ L E +DYINAS I
Sbjct: 28 DIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ----EDNDYINASLIKMEEA 83
Query: 1362 RSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------------- 1402
+ +YI TQGPL +T FW M+WE S VVML ++ E G
Sbjct: 84 QRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKWAQYWPQKEEKEMIFED 143
Query: 1403 ---------------YVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQ 1447
Y +R+ ++ + +R + F WP+ GVP+S F++F+ +
Sbjct: 144 TNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFK 203
Query: 1448 VHKTKEQFGQDGPITVHCS 1466
V ++ + GP+ VHCS
Sbjct: 204 VRESGSLSPEHGPVVVHCS 222
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 77/148 (52%), Gaps = 15/148 (10%)
Query: 1505 KCHQYWP--SERSIRYE------WFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQ 1556
K QYWP E+ + +E + E I Y Y +R+ ++ + +R + F
Sbjct: 126 KWAQYWPQKEEKEMIFEDTNLKLTLISEDIKSY----YTVRQLELENLTTQETREILHFH 181
Query: 1557 LIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVL 1613
WP+ GVP+S F++F+ +V ++ + GP+ VHCSAG+GR+G F T +++
Sbjct: 182 YTTWPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLM 241
Query: 1614 ERMQYEGVIDLFQTVRILRTQRPAMVQT 1641
++ + +D+ + + +R R ++QT
Sbjct: 242 DKRKDPSSVDIKKVLLEMRKFRMGLIQT 269
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 117/263 (44%), Gaps = 47/263 (17%)
Query: 516 MELEFKKLS----------NIRAEPSRFIS--ASLPCNKHKNRLVHILPVESSRVCLTPV 563
ME EF+++ +IR E S F A LP NK++NR + P + SR+ L
Sbjct: 9 MEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQE 68
Query: 564 RGDGFID--FIGQVHKTKEQFGQDGPITVHCSRLAQHIENLKA-----------NDNLKF 610
D +I+ I + GP+ C + + K+ +LK+
Sbjct: 69 DND-YINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKW 127
Query: 611 SQEYESIEPGQQFTWDHSSMEM----NKAKNRYA------NVIAYDHSRVIL-----STV 655
+Q + E ++ ++ +++++ K+ Y + +R IL +
Sbjct: 128 AQYWPQKEE-KEMIFEDTNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHYTTWP 186
Query: 656 D-GIPGRDG-FIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVLERMQY 710
D G+P F++F+ +V ++ + GP+ VHCSAG+GR+G F T +++++ +
Sbjct: 187 DFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKD 246
Query: 711 EGVIDLFQTVRILRTQRPAMVQT 733
+D+ + + +R R ++QT
Sbjct: 247 PSSVDIKKVLLEMRKFRMGLIQT 269
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 1711 LLFILKSSLESSGVNLPVGPLIVHCSAGVGRTGCFIVID 1749
L F+ K ES ++ GP++VHCSAG+GR+G F + D
Sbjct: 198 LNFLFKVR-ESGSLSPEHGPVVVHCSAGIGRSGTFCLAD 235
>pdb|3ZV2|A Chain A, Human Protein-Tyrosine Phosphatase 1b C215a, S216a Mutant
Length = 320
Score = 167 bits (423), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 94/274 (34%), Positives = 149/274 (54%), Gaps = 26/274 (9%)
Query: 752 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 811
NK +NRY +V +DHSR+ L D +DYINA+ +Y+ TQGPL T G F
Sbjct: 40 NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTCGHF 95
Query: 812 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 865
W MVWE +S +VM+ ++ E+ +KC QYWP + +T +T+ +D++ + Y
Sbjct: 96 WEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIK--SYY 153
Query: 866 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 925
+R + E REI +T WPD GVPE PA FL FL +VR ES +
Sbjct: 154 TVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSL 204
Query: 926 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 982
+ GP++VH +AG+GR+G F + D ++++ K +VDI + +R R ++QT
Sbjct: 205 SPEHGPVVVHAAAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTA 264
Query: 983 DQYMFIHDALLEAV--LCGNTEIPASSQMITRKD 1014
DQ F + A++E + G++ + + ++ +D
Sbjct: 265 DQLRFSYLAVIEGAKFIMGDSSVQDQWKELSHED 298
Score = 166 bits (421), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 92/254 (36%), Positives = 139/254 (54%), Gaps = 24/254 (9%)
Query: 241 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 300
NK +NRY +V +DHSR+ L D +DYINA+ +Y+ TQGPL T G F
Sbjct: 40 NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTCGHF 95
Query: 301 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 354
W MVWE +S +VM+ ++ E+ +KC QYWP + +T +T+ +D++ + Y
Sbjct: 96 WEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIK--SYY 153
Query: 355 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 414
+R + E REI +T WPD GVPE PA FL FL +VR ES +
Sbjct: 154 TVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSL 204
Query: 415 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 471
+ GP++VH +AG+GR+G F + D ++++ K +VDI + +R R ++QT
Sbjct: 205 SPEHGPVVVHAAAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTA 264
Query: 472 DQYMFIHDALLEAV 485
DQ F + A++E
Sbjct: 265 DQLRFSYLAVIEGA 278
Score = 95.9 bits (237), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 92/199 (46%), Gaps = 40/199 (20%)
Query: 1304 NIRAEPSRFIS--ASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFIDGYRL 1361
+IR E S F A LP NK++NR + P + SR+ L E +DYINAS I
Sbjct: 22 DIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ----EDNDYINASLIKMEEA 77
Query: 1362 RSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------------- 1402
+ +YI TQGPL +T FW M+WE S VVML ++ E G
Sbjct: 78 QRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFED 137
Query: 1403 ---------------YVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQ 1447
Y +R+ ++ + +R + F WP+ GVP+S F++F+ +
Sbjct: 138 TNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFK 197
Query: 1448 VHKTKEQFGQDGPITVHCS 1466
V ++ + GP+ VH +
Sbjct: 198 VRESGSLSPEHGPVVVHAA 216
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 77/148 (52%), Gaps = 15/148 (10%)
Query: 1505 KCHQYWP--SERSIRYE------WFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQ 1556
KC QYWP E+ + +E + E I Y Y +R+ ++ + +R + F
Sbjct: 120 KCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSY----YTVRQLELENLTTQETREILHFH 175
Query: 1557 LIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVL 1613
WP+ GVP+S F++F+ +V ++ + GP+ VH +AG+GR+G F T +++
Sbjct: 176 YTTWPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHAAAGIGRSGTFCLADTCLLLM 235
Query: 1614 ERMQYEGVIDLFQTVRILRTQRPAMVQT 1641
++ + +D+ + + +R R ++QT
Sbjct: 236 DKRKDPSSVDIKKVLLEMRKFRMGLIQT 263
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/262 (22%), Positives = 111/262 (42%), Gaps = 45/262 (17%)
Query: 516 MELEFKKLS----------NIRAEPSRFIS--ASLPCNKHKNRLVHILPVESSRVCLTPV 563
ME EF+++ +IR E S F A LP NK++NR + P + SR+ L
Sbjct: 3 MEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQE 62
Query: 564 RGDGFID--FIGQVHKTKEQFGQDGPITVHCSRLAQHIENLKANDNLKFSQEYE--SIEP 619
D +I+ I + GP+ C + + K+ + ++ E S++
Sbjct: 63 DND-YINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKC 121
Query: 620 GQQFTWDHSSMEMNKAKNRYANVIAYD------------------HSRVIL-----STVD 656
Q + + + N +I+ D +R IL + D
Sbjct: 122 AQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHYTTWPD 181
Query: 657 -GIPGRDG-FIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVLERMQYE 711
G+P F++F+ +V ++ + GP+ VH +AG+GR+G F T +++++ +
Sbjct: 182 FGVPESPASFLNFLFKVRESGSLSPEHGPVVVHAAAGIGRSGTFCLADTCLLLMDKRKDP 241
Query: 712 GVIDLFQTVRILRTQRPAMVQT 733
+D+ + + +R R ++QT
Sbjct: 242 SSVDIKKVLLEMRKFRMGLIQT 263
Score = 35.4 bits (80), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 1711 LLFILKSSLESSGVNLPVGPLIVHCSAGVGRTGCFIVID 1749
L F+ K ES ++ GP++VH +AG+GR+G F + D
Sbjct: 192 LNFLFKVR-ESGSLSPEHGPVVVHAAAGIGRSGTFCLAD 229
>pdb|2QEP|A Chain A, Crystal Structure Of The D1 Domain Of Ptprn2 (Ia2beta)
pdb|2QEP|B Chain B, Crystal Structure Of The D1 Domain Of Ptprn2 (Ia2beta)
Length = 304
Score = 167 bits (422), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 106/296 (35%), Positives = 152/296 (51%), Gaps = 31/296 (10%)
Query: 200 ISRLAQHIENLKANDNLKFSQEYESI-----EPGQQFTWDHSSMEMNKAKNRYANVIAYD 254
+S + H++N + +E+E++ EP F + E N KNR V+ YD
Sbjct: 19 LSYMEDHLKNKN-----RLEKEWEALCAYQAEPNSSFV---AQREENVPKNRSLAVLTYD 70
Query: 255 HSRVILSTVDGIPGSDYINAN-YCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIV 313
HSRV+L + SDYINA+ D ++ AY+ATQGPL T+ DFW+MVWE V IV
Sbjct: 71 HSRVLLKAENSHSHSDYINASPIMDHDPRNPAYIATQGPLPATVADFWQMVWESGCVVIV 130
Query: 314 MMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDVQE---LASYCIRTFMINKGADSERR 370
M+T L E +C YWP G+ Y V L V E + +R+F + +E R
Sbjct: 131 MLTPLAENGVRQCYHYWPDEGSNLYHIYEVNL--VSEHIWCEDFLVRSFYLKNLQTNETR 188
Query: 371 EIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVG 430
+ Q F +W D GVP L F R+V G + P+IVHCS G G
Sbjct: 189 TVTQFHFLSWYDRGVPSSSRSLLDFRRKVNKCYRGRSC-----------PIIVHCSDGAG 237
Query: 431 RTGCFIVIDAMIERI-KHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLEAV 485
R+G +++ID ++ ++ K K +DI + LR QR MVQT++Q+ F A+ E V
Sbjct: 238 RSGTYVLIDMVLNKMAKGAKEIDIAATLEHLRDQRPGMVQTKEQFEFALTAVAEEV 293
Score = 164 bits (416), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 101/265 (38%), Positives = 138/265 (52%), Gaps = 21/265 (7%)
Query: 737 EPGQQFTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVDGIPGSDYINAN-YCDGYRKHN 795
EP F + E N KNR V+ YDHSRV+L + SDYINA+ D ++
Sbjct: 45 EPNSSFV---AQREENVPKNRSLAVLTYDHSRVLLKAENSHSHSDYINASPIMDHDPRNP 101
Query: 796 AYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGHITVT 855
AY+ATQGPL T+ DFW+MVWE V IVM+T L E +C YWP G+ Y V
Sbjct: 102 AYIATQGPLPATVADFWQMVWESGCVVIVMLTPLAENGVRQCYHYWPDEGSNLYHIYEVN 161
Query: 856 LQDVQE---LASYCIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRA 912
L V E + +R+F + +E R + Q F +W D GVP L F R+V
Sbjct: 162 L--VSEHIWCEDFLVRSFYLKNLQTNETRTVTQFHFLSWYDRGVPSSSRSLLDFRRKVNK 219
Query: 913 MNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERI-KHDKTVDIYGHVTCL 971
G + P+IVHCS G GR+G +++ID ++ ++ K K +DI + L
Sbjct: 220 CYRGRSC-----------PIIVHCSDGAGRSGTYVLIDMVLNKMAKGAKEIDIAATLEHL 268
Query: 972 RAQRNYMVQTEDQYMFIHDALLEAV 996
R QR MVQT++Q+ F A+ E V
Sbjct: 269 RDQRPGMVQTKEQFEFALTAVAEEV 293
Score = 108 bits (270), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 99/205 (48%), Gaps = 34/205 (16%)
Query: 1294 RGKTEFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINA 1353
R + E++ L +AEP+ A N KNR + +L + SRV L SDYINA
Sbjct: 31 RLEKEWEALCAYQAEPNSSFVAQREENVPKNRSLAVLTYDHSRVLLKAENSHSHSDYINA 90
Query: 1354 SFIDGYRLRS-AYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMG----------- 1401
S I + R+ AYIATQGPL T DFW+M+WE ++VMLT L E G
Sbjct: 91 SPIMDHDPRNPAYIATQGPLPATVADFWQMVWESGCVVIVMLTPLAENGVRQCYHYWPDE 150
Query: 1402 --------------------RYVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGF 1441
+++R F + + + +RT+ QF + W ++GVP S
Sbjct: 151 GSNLYHIYEVNLVSEHIWCEDFLVRSFYLKNLQTNETRTVTQFHFLSWYDRGVPSSSRSL 210
Query: 1442 IDFIGQVHKTKEQFGQDGPITVHCS 1466
+DF +V+K G+ PI VHCS
Sbjct: 211 LDFRRKVNKCYR--GRSCPIIVHCS 233
Score = 98.6 bits (244), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 84/144 (58%), Gaps = 6/144 (4%)
Query: 1505 KCHQYWPSERSIRYEWFVVEPIAEYNMPQ-YVLREFKVTDARDATSRTLRQFQLIDWPEQ 1563
+C+ YWP E S Y + V ++E+ + +++R F + + + +RT+ QF + W ++
Sbjct: 142 QCYHYWPDEGSNLYHIYEVNLVSEHIWCEDFLVRSFYLKNLQTNETRTVTQFHFLSWYDR 201
Query: 1564 GVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGV-- 1621
GVP S +DF +V+K G+ PI VHCS G GR+G ++ + +VL +M +G
Sbjct: 202 GVPSSSRSLLDFRRKVNKCYR--GRSCPIIVHCSDGAGRSGTYVLIDMVLNKMA-KGAKE 258
Query: 1622 IDLFQTVRILRTQRPAMVQTEHLY 1645
ID+ T+ LR QRP MVQT+ +
Sbjct: 259 IDIAATLEHLRDQRPGMVQTKEQF 282
Score = 60.5 bits (145), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 104/251 (41%), Gaps = 35/251 (13%)
Query: 516 MELEFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLTPVRGDGFIDFIGQV 575
+E E++ L +AEP+ A N KNR + +L + SRV L D+I
Sbjct: 32 LEKEWEALCAYQAEPNSSFVAQREENVPKNRSLAVLTYDHSRVLLKAENSHSHSDYINAS 91
Query: 576 ----H--KTKEQFGQDGPITVHCSRLAQHIENLK----------ANDNLKFSQEYESIEP 619
H + GP+ + Q + A + ++ Y E
Sbjct: 92 PIMDHDPRNPAYIATQGPLPATVADFWQMVWESGCVVIVMLTPLAENGVRQCYHYWPDEG 151
Query: 620 GQQF-------TWDHSSMEMNKAKNRYANVIAYDHSRVI-----LSTVD-GIPGRD-GFI 665
+ +H E ++ Y + + +R + LS D G+P +
Sbjct: 152 SNLYHIYEVNLVSEHIWCEDFLVRSFYLKNLQTNETRTVTQFHFLSWYDRGVPSSSRSLL 211
Query: 666 DFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGV--IDLFQTVRIL 723
DF +V+K G+ PI VHCS G GR+G ++ + +VL +M +G ID+ T+ L
Sbjct: 212 DFRRKVNKCYR--GRSCPIIVHCSDGAGRSGTYVLIDMVLNKMA-KGAKEIDIAATLEHL 268
Query: 724 RTQRPAMVQTE 734
R QRP MVQT+
Sbjct: 269 RDQRPGMVQTK 279
Score = 35.8 bits (81), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 6/42 (14%)
Query: 1730 PLIVHCSAGVGRTGCFIVID------AKEQYQFCYHAALEYL 1765
P+IVHCS G GR+G +++ID AK + A LE+L
Sbjct: 227 PIIVHCSDGAGRSGTYVLIDMVLNKMAKGAKEIDIAATLEHL 268
Score = 32.0 bits (71), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 9/60 (15%)
Query: 598 HIENLKANDNLKFSQEYESI-----EPGQQFTWDHSSMEMNKAKNRYANVIAYDHSRVIL 652
++E+ N N + +E+E++ EP F + E N KNR V+ YDHSRV+L
Sbjct: 21 YMEDHLKNKN-RLEKEWEALCAYQAEPNSSFV---AQREENVPKNRSLAVLTYDHSRVLL 76
>pdb|1PA1|A Chain A, Crystal Structure Of The C215d Mutant Of Protein Tyrosine
Phosphatase 1b
Length = 310
Score = 166 bits (421), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 95/274 (34%), Positives = 149/274 (54%), Gaps = 26/274 (9%)
Query: 752 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 811
NK +NRY +V +DHSR+ L D +DYINA+ +Y+ TQGPL T G F
Sbjct: 52 NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTCGHF 107
Query: 812 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 865
W MVWE +S +VM+ ++ E+ +KC QYWP + +T +T+ +D++ + Y
Sbjct: 108 WEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIK--SYY 165
Query: 866 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 925
+R + E REI +T WPD GVPE PA FL FL +VR ES +
Sbjct: 166 TVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSL 216
Query: 926 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 982
+ GP++VH SAG+GR+G F + D ++++ K +VDI + +R R ++QT
Sbjct: 217 SPEHGPVVVHDSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTA 276
Query: 983 DQYMFIHDALLEAV--LCGNTEIPASSQMITRKD 1014
DQ F + A++E + G++ + + ++ +D
Sbjct: 277 DQLRFSYLAVIEGAKFIMGDSSVQDQWKELSHED 310
Score = 165 bits (418), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 93/254 (36%), Positives = 139/254 (54%), Gaps = 24/254 (9%)
Query: 241 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 300
NK +NRY +V +DHSR+ L D +DYINA+ +Y+ TQGPL T G F
Sbjct: 52 NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTCGHF 107
Query: 301 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 354
W MVWE +S +VM+ ++ E+ +KC QYWP + +T +T+ +D++ + Y
Sbjct: 108 WEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIK--SYY 165
Query: 355 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 414
+R + E REI +T WPD GVPE PA FL FL +VR ES +
Sbjct: 166 TVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSL 216
Query: 415 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 471
+ GP++VH SAG+GR+G F + D ++++ K +VDI + +R R ++QT
Sbjct: 217 SPEHGPVVVHDSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTA 276
Query: 472 DQYMFIHDALLEAV 485
DQ F + A++E
Sbjct: 277 DQLRFSYLAVIEGA 290
Score = 95.1 bits (235), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 92/199 (46%), Gaps = 40/199 (20%)
Query: 1304 NIRAEPSRFIS--ASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFIDGYRL 1361
+IR E S F A LP NK++NR + P + SR+ L E +DYINAS I
Sbjct: 34 DIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ----EDNDYINASLIKMEEA 89
Query: 1362 RSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------------- 1402
+ +YI TQGPL +T FW M+WE S VVML ++ E G
Sbjct: 90 QRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFED 149
Query: 1403 ---------------YVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQ 1447
Y +R+ ++ + +R + F WP+ GVP+S F++F+ +
Sbjct: 150 TNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFK 209
Query: 1448 VHKTKEQFGQDGPITVHCS 1466
V ++ + GP+ VH S
Sbjct: 210 VRESGSLSPEHGPVVVHDS 228
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 77/148 (52%), Gaps = 15/148 (10%)
Query: 1505 KCHQYWP--SERSIRYE------WFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQ 1556
KC QYWP E+ + +E + E I Y Y +R+ ++ + +R + F
Sbjct: 132 KCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSY----YTVRQLELENLTTQETREILHFH 187
Query: 1557 LIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVL 1613
WP+ GVP+S F++F+ +V ++ + GP+ VH SAG+GR+G F T +++
Sbjct: 188 YTTWPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHDSAGIGRSGTFCLADTCLLLM 247
Query: 1614 ERMQYEGVIDLFQTVRILRTQRPAMVQT 1641
++ + +D+ + + +R R ++QT
Sbjct: 248 DKRKDPSSVDIKKVLLEMRKFRMGLIQT 275
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 104/243 (42%), Gaps = 35/243 (14%)
Query: 525 NIRAEPSRFIS--ASLPCNKHKNRLVHILPVESSRVCLTPVRGDGFID--FIGQVHKTKE 580
+IR E S F A LP NK++NR + P + SR+ L D +I+ I +
Sbjct: 34 DIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQEDND-YINASLIKMEEAQRS 92
Query: 581 QFGQDGPITVHCSRLAQHIENLKANDNLKFSQEYE--SIEPGQQFTWDHSSMEMNKAKNR 638
GP+ C + + K+ + ++ E S++ Q + + + N
Sbjct: 93 YILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNL 152
Query: 639 YANVIAYD------------------HSRVIL-----STVD-GIPGR-DGFIDFIGQVHK 673
+I+ D +R IL + D G+P F++F+ +V +
Sbjct: 153 KLTLISEDIKSYYTVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRE 212
Query: 674 TKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVLERMQYEGVIDLFQTVRILRTQRPAM 730
+ + GP+ VH SAG+GR+G F T +++++ + +D+ + + +R R +
Sbjct: 213 SGSLSPEHGPVVVHDSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGL 272
Query: 731 VQT 733
+QT
Sbjct: 273 IQT 275
Score = 35.4 bits (80), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 1711 LLFILKSSLESSGVNLPVGPLIVHCSAGVGRTGCFIVID 1749
L F+ K ES ++ GP++VH SAG+GR+G F + D
Sbjct: 204 LNFLFKVR-ESGSLSPEHGPVVVHDSAGIGRSGTFCLAD 241
>pdb|2QCJ|A Chain A, Native Structure Of Lyp
pdb|2QCJ|B Chain B, Native Structure Of Lyp
pdb|2QCT|A Chain A, Structure Of Lyp With Inhibitor I-C11
pdb|2QCT|B Chain B, Structure Of Lyp With Inhibitor I-C11
Length = 313
Score = 164 bits (415), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 96/277 (34%), Positives = 140/277 (50%), Gaps = 18/277 (6%)
Query: 212 ANDNLKFSQEYESIEPGQQFTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVDGIPGSDY 271
AN+ LK ++ + + + + N KNRY +++ YD+SRV LS + S Y
Sbjct: 44 ANEFLKLKRQSTKYKADKTYPTTVAEKPKNIKKNRYKDILPYDYSRVELSLITSDEDSSY 103
Query: 272 INANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYW- 330
INAN+ G AY+ATQGPL TL DFWRM+WE + IVM E + KC++YW
Sbjct: 104 INANFIKGVYGPKAYIATQGPLSTTLLDFWRMIWEYSVLIIVMACMEYEMGKKKCERYWA 163
Query: 331 -PSRGTETYGHITVTLQDVQELASYCIRTFMINKGADSERREIKQLQFTAWPDHGVPEHP 389
P +G +V+ + + + Y IRT + +SE R I Q + WPDH VP
Sbjct: 164 EPGEMQLEFGPFSVSCEAEKRKSDYIIRTLKVK--FNSETRTIYQFHYKNWPDHDVPSSI 221
Query: 390 APFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHD- 448
P L + VR E V P+ +HCSAG GRTG ID +K
Sbjct: 222 DPILELIWDVRCYQ------EDDSV-----PICIHCSAGCGRTGVICAIDYTWMLLKDGI 270
Query: 449 --KTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLE 483
+ ++ + +R QR +VQT++QY +++A+LE
Sbjct: 271 IPENFSVFSLIREMRTQRPSLVQTQEQYELVYNAVLE 307
Score = 162 bits (410), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 92/248 (37%), Positives = 129/248 (52%), Gaps = 18/248 (7%)
Query: 752 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 811
N KNRY +++ YD+SRV LS + S YINAN+ G AY+ATQGPL TL DF
Sbjct: 73 NIKKNRYKDILPYDYSRVELSLITSDEDSSYINANFIKGVYGPKAYIATQGPLSTTLLDF 132
Query: 812 WRMVWELRSVTIVMMTKLEERTRIKCDQYW--PSRGTETYGHITVTLQDVQELASYCIRT 869
WRM+WE + IVM E + KC++YW P +G +V+ + + + Y IRT
Sbjct: 133 WRMIWEYSVLIIVMACMEYEMGKKKCERYWAEPGEMQLEFGPFSVSCEAEKRKSDYIIRT 192
Query: 870 FMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPV 929
+ +SE R I Q + WPDH VP P L + VR E V
Sbjct: 193 LKVK--FNSETRTIYQFHYKNWPDHDVPSSIDPILELIWDVRCYQ------EDDSV---- 240
Query: 930 GPLIVHCSAGVGRTGCFIVIDAMIERIKHD---KTVDIYGHVTCLRAQRNYMVQTEDQYM 986
P+ +HCSAG GRTG ID +K + ++ + +R QR +VQT++QY
Sbjct: 241 -PICIHCSAGCGRTGVICAIDYTWMLLKDGIIPENFSVFSLIREMRTQRPSLVQTQEQYE 299
Query: 987 FIHDALLE 994
+++A+LE
Sbjct: 300 LVYNAVLE 307
Score = 107 bits (266), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 67/184 (36%), Positives = 89/184 (48%), Gaps = 36/184 (19%)
Query: 1315 ASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFIDGYRLRSAYIATQGPLAD 1374
A P N KNR ILP + SRV L+ + E S YINA+FI G AYIATQGPL+
Sbjct: 68 AEKPKNIKKNRYKDILPYDYSRVELSLITSDEDSSYINANFIKGVYGPKAYIATQGPLST 127
Query: 1375 TTEDFWRMLWEHNSTIVVMLTKLKEMGR-------------------------------- 1402
T DFWRM+WE++ I+VM EMG+
Sbjct: 128 TLLDFWRMIWEYSVLIIVMACMEYEMGKKKCERYWAEPGEMQLEFGPFSVSCEAEKRKSD 187
Query: 1403 YVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPIT 1462
Y++R KV ++ +RT+ QF +WP+ VP S D ++ I V +E PI
Sbjct: 188 YIIRTLKV--KFNSETRTIYQFHYKNWPDHDVPSSIDPILELIWDVRCYQED--DSVPIC 243
Query: 1463 VHCS 1466
+HCS
Sbjct: 244 IHCS 247
Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 84/164 (51%), Gaps = 15/164 (9%)
Query: 1492 SVLIAYLVLFSQE----KCHQYW--PSERSIRYEWFVVEPIAEYNMPQYVLREFKVTDAR 1545
SVLI + E KC +YW P E + + F V AE Y++R KV
Sbjct: 140 SVLIIVMACMEYEMGKKKCERYWAEPGEMQLEFGPFSVSCEAEKRKSDYIIRTLKV--KF 197
Query: 1546 DATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGV 1605
++ +RT+ QF +WP+ VP S D ++ I V +E PI +HCSAG GRTGV
Sbjct: 198 NSETRTIYQFHYKNWPDHDVPSSIDPILELIWDVRCYQED--DSVPICIHCSAGCGRTGV 255
Query: 1606 FITLSIVLERMQYEGVI----DLFQTVRILRTQRPAMVQTEHLY 1645
+ ++ +G+I +F +R +RTQRP++VQT+ Y
Sbjct: 256 ICAIDYTWMLLK-DGIIPENFSVFSLIREMRTQRPSLVQTQEQY 298
Score = 60.5 bits (145), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 97/229 (42%), Gaps = 31/229 (13%)
Query: 536 ASLPCNKHKNRLVHILPVESSRVCLTPVRGD---GFID--FIGQVHKTKEQFGQDGPITV 590
A P N KNR ILP + SRV L+ + D +I+ FI V+ K GP++
Sbjct: 68 AEKPKNIKKNRYKDILPYDYSRVELSLITSDEDSSYINANFIKGVYGPKAYIATQGPLST 127
Query: 591 HCSRLAQHIENLKANDNLKFSQEYES---------IEPGQ---QFTWDHSSMEMNKAKNR 638
+ I + EYE EPG+ +F S E K K+
Sbjct: 128 TLLDFWRMIWEYSVLIIVMACMEYEMGKKKCERYWAEPGEMQLEFGPFSVSCEAEKRKSD 187
Query: 639 YA----NVIAYDHSRVILST-VDGIPGRD--GFIDFIGQVHKTKEQFGQDG--PITVHCS 689
Y V +R I P D ID I ++ + +D PI +HCS
Sbjct: 188 YIIRTLKVKFNSETRTIYQFHYKNWPDHDVPSSIDPILELIWDVRCYQEDDSVPICIHCS 247
Query: 690 AGVGRTGVFITLSIVLERMQYEGVI----DLFQTVRILRTQRPAMVQTE 734
AG GRTGV + ++ +G+I +F +R +RTQRP++VQT+
Sbjct: 248 AGCGRTGVICAIDYTWMLLK-DGIIPENFSVFSLIREMRTQRPSLVQTQ 295
Score = 38.1 bits (87), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 1/109 (0%)
Query: 604 ANDNLKFSQEYESIEPGQQFTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVDGIPGRDG 663
AN+ LK ++ + + + + N KNRY +++ YD+SRV LS +
Sbjct: 44 ANEFLKLKRQSTKYKADKTYPTTVAEKPKNIKKNRYKDILPYDYSRVELSLITSDEDSSY 103
Query: 664 F-IDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYE 711
+FI V+ K GP++ + L IV+ M+YE
Sbjct: 104 INANFIKGVYGPKAYIATQGPLSTTLLDFWRMIWEYSVLIIVMACMEYE 152
Score = 33.9 bits (76), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 1730 PLIVHCSAGVGRTGCFIVID 1749
P+ +HCSAG GRTG ID
Sbjct: 241 PICIHCSAGCGRTGVICAID 260
>pdb|1A5Y|A Chain A, Protein Tyrosine Phosphatase 1b Cysteinyl-Phosphate
Intermediate
Length = 330
Score = 163 bits (413), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 93/274 (33%), Positives = 148/274 (54%), Gaps = 26/274 (9%)
Query: 752 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 811
NK +NRY +V +DHSR+ L D +DYINA+ +Y+ TQGPL T G F
Sbjct: 40 NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTCGHF 95
Query: 812 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 865
W MVWE +S +VM+ ++ E+ +KC QYWP + +T +T+ +D++ + Y
Sbjct: 96 WEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIK--SYY 153
Query: 866 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 925
+R + E REI +T WPD GVPE PA FL FL +VR ES +
Sbjct: 154 TVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSL 204
Query: 926 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 982
+ GP++VH SAG+GR+G F + D ++++ K +VDI + +R R ++ T
Sbjct: 205 SPEHGPVVVHXSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLDMRKFRMGLIATA 264
Query: 983 DQYMFIHDALLEAV--LCGNTEIPASSQMITRKD 1014
+Q F + A++E + G++ + + ++ +D
Sbjct: 265 EQLRFSYLAVIEGAKFIMGDSSVQDQWKELSHED 298
Score = 162 bits (411), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 91/254 (35%), Positives = 138/254 (54%), Gaps = 24/254 (9%)
Query: 241 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 300
NK +NRY +V +DHSR+ L D +DYINA+ +Y+ TQGPL T G F
Sbjct: 40 NKNRNRYRDVSPFDHSRIKLHQED----NDYINASLIKMEEAQRSYILTQGPLPNTCGHF 95
Query: 301 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG------TETYGHITVTLQDVQELASY 354
W MVWE +S +VM+ ++ E+ +KC QYWP + +T +T+ +D++ + Y
Sbjct: 96 WEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIK--SYY 153
Query: 355 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 414
+R + E REI +T WPD GVPE PA FL FL +VR ES +
Sbjct: 154 TVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVR---------ESGSL 204
Query: 415 NLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTE 471
+ GP++VH SAG+GR+G F + D ++++ K +VDI + +R R ++ T
Sbjct: 205 SPEHGPVVVHXSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLDMRKFRMGLIATA 264
Query: 472 DQYMFIHDALLEAV 485
+Q F + A++E
Sbjct: 265 EQLRFSYLAVIEGA 278
Score = 96.3 bits (238), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 92/199 (46%), Gaps = 40/199 (20%)
Query: 1304 NIRAEPSRFIS--ASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFIDGYRL 1361
+IR E S F A LP NK++NR + P + SR+ L E +DYINAS I
Sbjct: 22 DIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ----EDNDYINASLIKMEEA 77
Query: 1362 RSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------------- 1402
+ +YI TQGPL +T FW M+WE S VVML ++ E G
Sbjct: 78 QRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFED 137
Query: 1403 ---------------YVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQ 1447
Y +R+ ++ + +R + F WP+ GVP+S F++F+ +
Sbjct: 138 TNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFK 197
Query: 1448 VHKTKEQFGQDGPITVHCS 1466
V ++ + GP+ VH S
Sbjct: 198 VRESGSLSPEHGPVVVHXS 216
Score = 70.5 bits (171), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 76/148 (51%), Gaps = 15/148 (10%)
Query: 1505 KCHQYWP--SERSIRYE------WFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQ 1556
KC QYWP E+ + +E + E I Y Y +R+ ++ + +R + F
Sbjct: 120 KCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSY----YTVRQLELENLTTQETREILHFH 175
Query: 1557 LIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVL 1613
WP+ GVP+S F++F+ +V ++ + GP+ VH SAG+GR+G F T +++
Sbjct: 176 YTTWPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHXSAGIGRSGTFCLADTCLLLM 235
Query: 1614 ERMQYEGVIDLFQTVRILRTQRPAMVQT 1641
++ + +D+ + + +R R ++ T
Sbjct: 236 DKRKDPSSVDIKKVLLDMRKFRMGLIAT 263
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/262 (22%), Positives = 110/262 (41%), Gaps = 45/262 (17%)
Query: 516 MELEFKKLS----------NIRAEPSRFIS--ASLPCNKHKNRLVHILPVESSRVCLTPV 563
ME EF+++ +IR E S F A LP NK++NR + P + SR+ L
Sbjct: 3 MEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQE 62
Query: 564 RGDGFID--FIGQVHKTKEQFGQDGPITVHCSRLAQHIENLKANDNLKFSQEYE--SIEP 619
D +I+ I + GP+ C + + K+ + ++ E S++
Sbjct: 63 DND-YINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKC 121
Query: 620 GQQFTWDHSSMEMNKAKNRYANVIAYD------------------HSRVIL-----STVD 656
Q + + + N +I+ D +R IL + D
Sbjct: 122 AQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHYTTWPD 181
Query: 657 -GIPGRDG-FIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFI---TLSIVLERMQYE 711
G+P F++F+ +V ++ + GP+ VH SAG+GR+G F T +++++ +
Sbjct: 182 FGVPESPASFLNFLFKVRESGSLSPEHGPVVVHXSAGIGRSGTFCLADTCLLLMDKRKDP 241
Query: 712 GVIDLFQTVRILRTQRPAMVQT 733
+D+ + + +R R ++ T
Sbjct: 242 SSVDIKKVLLDMRKFRMGLIAT 263
Score = 35.8 bits (81), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 1711 LLFILKSSLESSGVNLPVGPLIVHCSAGVGRTGCFIVID 1749
L F+ K ES ++ GP++VH SAG+GR+G F + D
Sbjct: 192 LNFLFKVR-ESGSLSPEHGPVVVHXSAGIGRSGTFCLAD 229
>pdb|3H2X|A Chain A, Crystal Structure Of The Human Lymphoid Tyrosine
Phosphatase Catalytic Domain
Length = 302
Score = 163 bits (413), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 96/277 (34%), Positives = 140/277 (50%), Gaps = 18/277 (6%)
Query: 212 ANDNLKFSQEYESIEPGQQFTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVDGIPGSDY 271
AN+ LK ++ + + + + N KNRY +++ YD+SRV LS + S Y
Sbjct: 25 ANEFLKLKRQSTKYKADKTYPTTVAEKPKNIKKNRYKDILPYDYSRVELSLITSDEDSSY 84
Query: 272 INANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYW- 330
INAN+ G AY+ATQGPL TL DFWRM+WE + IVM E + KC++YW
Sbjct: 85 INANFIKGVYGPKAYIATQGPLSTTLLDFWRMIWEYSVLIIVMACMEYEMGKKKCERYWA 144
Query: 331 -PSRGTETYGHITVTLQDVQELASYCIRTFMINKGADSERREIKQLQFTAWPDHGVPEHP 389
P +G +V+ + + + Y IRT + +SE R I Q + WPDH VP
Sbjct: 145 EPGEMQLEFGPFSVSCEAEKRKSDYIIRTLKVK--FNSETRTIYQFHYKNWPDHDVPSSI 202
Query: 390 APFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHD- 448
P L + VR E V P+ +HCSAG GRTG ID +K
Sbjct: 203 DPILELIWDVRCYQ------EDDSV-----PICIHCSAGCGRTGVICAIDYTWMLLKDGI 251
Query: 449 --KTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLE 483
+ ++ + +R QR +VQT++QY +++A+LE
Sbjct: 252 IPENFSVFSLIREMRTQRPSLVQTQEQYELVYNAVLE 288
Score = 162 bits (409), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/248 (37%), Positives = 129/248 (52%), Gaps = 18/248 (7%)
Query: 752 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 811
N KNRY +++ YD+SRV LS + S YINAN+ G AY+ATQGPL TL DF
Sbjct: 54 NIKKNRYKDILPYDYSRVELSLITSDEDSSYINANFIKGVYGPKAYIATQGPLSTTLLDF 113
Query: 812 WRMVWELRSVTIVMMTKLEERTRIKCDQYW--PSRGTETYGHITVTLQDVQELASYCIRT 869
WRM+WE + IVM E + KC++YW P +G +V+ + + + Y IRT
Sbjct: 114 WRMIWEYSVLIIVMACMEYEMGKKKCERYWAEPGEMQLEFGPFSVSCEAEKRKSDYIIRT 173
Query: 870 FMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPV 929
+ +SE R I Q + WPDH VP P L + VR E V
Sbjct: 174 LKVK--FNSETRTIYQFHYKNWPDHDVPSSIDPILELIWDVRCYQ------EDDSV---- 221
Query: 930 GPLIVHCSAGVGRTGCFIVIDAMIERIKHD---KTVDIYGHVTCLRAQRNYMVQTEDQYM 986
P+ +HCSAG GRTG ID +K + ++ + +R QR +VQT++QY
Sbjct: 222 -PICIHCSAGCGRTGVICAIDYTWMLLKDGIIPENFSVFSLIREMRTQRPSLVQTQEQYE 280
Query: 987 FIHDALLE 994
+++A+LE
Sbjct: 281 LVYNAVLE 288
Score = 107 bits (266), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 67/184 (36%), Positives = 89/184 (48%), Gaps = 36/184 (19%)
Query: 1315 ASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFIDGYRLRSAYIATQGPLAD 1374
A P N KNR ILP + SRV L+ + E S YINA+FI G AYIATQGPL+
Sbjct: 49 AEKPKNIKKNRYKDILPYDYSRVELSLITSDEDSSYINANFIKGVYGPKAYIATQGPLST 108
Query: 1375 TTEDFWRMLWEHNSTIVVMLTKLKEMGR-------------------------------- 1402
T DFWRM+WE++ I+VM EMG+
Sbjct: 109 TLLDFWRMIWEYSVLIIVMACMEYEMGKKKCERYWAEPGEMQLEFGPFSVSCEAEKRKSD 168
Query: 1403 YVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPIT 1462
Y++R KV ++ +RT+ QF +WP+ VP S D ++ I V +E PI
Sbjct: 169 YIIRTLKV--KFNSETRTIYQFHYKNWPDHDVPSSIDPILELIWDVRCYQE--DDSVPIC 224
Query: 1463 VHCS 1466
+HCS
Sbjct: 225 IHCS 228
Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 84/164 (51%), Gaps = 15/164 (9%)
Query: 1492 SVLIAYLVLFSQE----KCHQYW--PSERSIRYEWFVVEPIAEYNMPQYVLREFKVTDAR 1545
SVLI + E KC +YW P E + + F V AE Y++R KV
Sbjct: 121 SVLIIVMACMEYEMGKKKCERYWAEPGEMQLEFGPFSVSCEAEKRKSDYIIRTLKV--KF 178
Query: 1546 DATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGV 1605
++ +RT+ QF +WP+ VP S D ++ I V +E PI +HCSAG GRTGV
Sbjct: 179 NSETRTIYQFHYKNWPDHDVPSSIDPILELIWDVRCYQE--DDSVPICIHCSAGCGRTGV 236
Query: 1606 FITLSIVLERMQYEGVI----DLFQTVRILRTQRPAMVQTEHLY 1645
+ ++ +G+I +F +R +RTQRP++VQT+ Y
Sbjct: 237 ICAIDYTWMLLK-DGIIPENFSVFSLIREMRTQRPSLVQTQEQY 279
Score = 60.5 bits (145), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 97/229 (42%), Gaps = 31/229 (13%)
Query: 536 ASLPCNKHKNRLVHILPVESSRVCLTPVRGD---GFID--FIGQVHKTKEQFGQDGPITV 590
A P N KNR ILP + SRV L+ + D +I+ FI V+ K GP++
Sbjct: 49 AEKPKNIKKNRYKDILPYDYSRVELSLITSDEDSSYINANFIKGVYGPKAYIATQGPLST 108
Query: 591 HCSRLAQHIENLKANDNLKFSQEYES---------IEPGQ---QFTWDHSSMEMNKAKNR 638
+ I + EYE EPG+ +F S E K K+
Sbjct: 109 TLLDFWRMIWEYSVLIIVMACMEYEMGKKKCERYWAEPGEMQLEFGPFSVSCEAEKRKSD 168
Query: 639 YA----NVIAYDHSRVILST-VDGIPGRD--GFIDFIGQVHKTKEQFGQDG--PITVHCS 689
Y V +R I P D ID I ++ + +D PI +HCS
Sbjct: 169 YIIRTLKVKFNSETRTIYQFHYKNWPDHDVPSSIDPILELIWDVRCYQEDDSVPICIHCS 228
Query: 690 AGVGRTGVFITLSIVLERMQYEGVI----DLFQTVRILRTQRPAMVQTE 734
AG GRTGV + ++ +G+I +F +R +RTQRP++VQT+
Sbjct: 229 AGCGRTGVICAIDYTWMLLK-DGIIPENFSVFSLIREMRTQRPSLVQTQ 276
Score = 37.7 bits (86), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 1/109 (0%)
Query: 604 ANDNLKFSQEYESIEPGQQFTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVDGIPGRDG 663
AN+ LK ++ + + + + N KNRY +++ YD+SRV LS +
Sbjct: 25 ANEFLKLKRQSTKYKADKTYPTTVAEKPKNIKKNRYKDILPYDYSRVELSLITSDEDSSY 84
Query: 664 F-IDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYE 711
+FI V+ K GP++ + L IV+ M+YE
Sbjct: 85 INANFIKGVYGPKAYIATQGPLSTTLLDFWRMIWEYSVLIIVMACMEYE 133
Score = 33.9 bits (76), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 1730 PLIVHCSAGVGRTGCFIVID 1749
P+ +HCSAG GRTG ID
Sbjct: 222 PICIHCSAGCGRTGVICAID 241
>pdb|2P6X|A Chain A, Crystal Structure Of Human Tyrosine Phosphatase Ptpn22
pdb|2P6X|B Chain B, Crystal Structure Of Human Tyrosine Phosphatase Ptpn22
Length = 309
Score = 163 bits (413), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 96/277 (34%), Positives = 140/277 (50%), Gaps = 18/277 (6%)
Query: 212 ANDNLKFSQEYESIEPGQQFTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVDGIPGSDY 271
AN+ LK ++ + + + + N KNRY +++ YD+SRV LS + S Y
Sbjct: 25 ANEFLKLKRQSTKYKADKTYPTTVAEKPKNIKKNRYKDILPYDYSRVELSLITSDEDSSY 84
Query: 272 INANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYW- 330
INAN+ G AY+ATQGPL TL DFWRM+WE + IVM E + KC++YW
Sbjct: 85 INANFIKGVYGPKAYIATQGPLSTTLLDFWRMIWEYSVLIIVMACMEYEMGKKKCERYWA 144
Query: 331 -PSRGTETYGHITVTLQDVQELASYCIRTFMINKGADSERREIKQLQFTAWPDHGVPEHP 389
P +G +V+ + + + Y IRT + +SE R I Q + WPDH VP
Sbjct: 145 EPGEMQLEFGPFSVSCEAEKRKSDYIIRTLKVK--FNSETRTIYQFHYKNWPDHDVPSSI 202
Query: 390 APFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHD- 448
P L + VR E V P+ +HCSAG GRTG ID +K
Sbjct: 203 DPILELIWDVRCYQ------EDDSV-----PICIHCSAGCGRTGVICAIDYTWMLLKDGI 251
Query: 449 --KTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLE 483
+ ++ + +R QR +VQT++QY +++A+LE
Sbjct: 252 IPENFSVFSLIREMRTQRPSLVQTQEQYELVYNAVLE 288
Score = 162 bits (409), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/248 (37%), Positives = 129/248 (52%), Gaps = 18/248 (7%)
Query: 752 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 811
N KNRY +++ YD+SRV LS + S YINAN+ G AY+ATQGPL TL DF
Sbjct: 54 NIKKNRYKDILPYDYSRVELSLITSDEDSSYINANFIKGVYGPKAYIATQGPLSTTLLDF 113
Query: 812 WRMVWELRSVTIVMMTKLEERTRIKCDQYW--PSRGTETYGHITVTLQDVQELASYCIRT 869
WRM+WE + IVM E + KC++YW P +G +V+ + + + Y IRT
Sbjct: 114 WRMIWEYSVLIIVMACMEYEMGKKKCERYWAEPGEMQLEFGPFSVSCEAEKRKSDYIIRT 173
Query: 870 FMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPV 929
+ +SE R I Q + WPDH VP P L + VR E V
Sbjct: 174 LKVK--FNSETRTIYQFHYKNWPDHDVPSSIDPILELIWDVRCYQ------EDDSV---- 221
Query: 930 GPLIVHCSAGVGRTGCFIVIDAMIERIKHD---KTVDIYGHVTCLRAQRNYMVQTEDQYM 986
P+ +HCSAG GRTG ID +K + ++ + +R QR +VQT++QY
Sbjct: 222 -PICIHCSAGCGRTGVICAIDYTWMLLKDGIIPENFSVFSLIREMRTQRPSLVQTQEQYE 280
Query: 987 FIHDALLE 994
+++A+LE
Sbjct: 281 LVYNAVLE 288
Score = 107 bits (266), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 67/184 (36%), Positives = 89/184 (48%), Gaps = 36/184 (19%)
Query: 1315 ASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFIDGYRLRSAYIATQGPLAD 1374
A P N KNR ILP + SRV L+ + E S YINA+FI G AYIATQGPL+
Sbjct: 49 AEKPKNIKKNRYKDILPYDYSRVELSLITSDEDSSYINANFIKGVYGPKAYIATQGPLST 108
Query: 1375 TTEDFWRMLWEHNSTIVVMLTKLKEMGR-------------------------------- 1402
T DFWRM+WE++ I+VM EMG+
Sbjct: 109 TLLDFWRMIWEYSVLIIVMACMEYEMGKKKCERYWAEPGEMQLEFGPFSVSCEAEKRKSD 168
Query: 1403 YVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPIT 1462
Y++R KV ++ +RT+ QF +WP+ VP S D ++ I V +E PI
Sbjct: 169 YIIRTLKV--KFNSETRTIYQFHYKNWPDHDVPSSIDPILELIWDVRCYQE--DDSVPIC 224
Query: 1463 VHCS 1466
+HCS
Sbjct: 225 IHCS 228
Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 84/164 (51%), Gaps = 15/164 (9%)
Query: 1492 SVLIAYLVLFSQE----KCHQYW--PSERSIRYEWFVVEPIAEYNMPQYVLREFKVTDAR 1545
SVLI + E KC +YW P E + + F V AE Y++R KV
Sbjct: 121 SVLIIVMACMEYEMGKKKCERYWAEPGEMQLEFGPFSVSCEAEKRKSDYIIRTLKV--KF 178
Query: 1546 DATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGV 1605
++ +RT+ QF +WP+ VP S D ++ I V +E PI +HCSAG GRTGV
Sbjct: 179 NSETRTIYQFHYKNWPDHDVPSSIDPILELIWDVRCYQE--DDSVPICIHCSAGCGRTGV 236
Query: 1606 FITLSIVLERMQYEGVI----DLFQTVRILRTQRPAMVQTEHLY 1645
+ ++ +G+I +F +R +RTQRP++VQT+ Y
Sbjct: 237 ICAIDYTWMLLK-DGIIPENFSVFSLIREMRTQRPSLVQTQEQY 279
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 97/229 (42%), Gaps = 31/229 (13%)
Query: 536 ASLPCNKHKNRLVHILPVESSRVCLTPVRGD---GFID--FIGQVHKTKEQFGQDGPITV 590
A P N KNR ILP + SRV L+ + D +I+ FI V+ K GP++
Sbjct: 49 AEKPKNIKKNRYKDILPYDYSRVELSLITSDEDSSYINANFIKGVYGPKAYIATQGPLST 108
Query: 591 HCSRLAQHIENLKANDNLKFSQEYES---------IEPGQ---QFTWDHSSMEMNKAKNR 638
+ I + EYE EPG+ +F S E K K+
Sbjct: 109 TLLDFWRMIWEYSVLIIVMACMEYEMGKKKCERYWAEPGEMQLEFGPFSVSCEAEKRKSD 168
Query: 639 Y----ANVIAYDHSRVILST-VDGIPGRD--GFIDFIGQVHKTKEQFGQDG--PITVHCS 689
Y V +R I P D ID I ++ + +D PI +HCS
Sbjct: 169 YIIRTLKVKFNSETRTIYQFHYKNWPDHDVPSSIDPILELIWDVRCYQEDDSVPICIHCS 228
Query: 690 AGVGRTGVFITLSIVLERMQYEGVI----DLFQTVRILRTQRPAMVQTE 734
AG GRTGV + ++ +G+I +F +R +RTQRP++VQT+
Sbjct: 229 AGCGRTGVICAIDYTWMLLK-DGIIPENFSVFSLIREMRTQRPSLVQTQ 276
Score = 37.7 bits (86), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 1/109 (0%)
Query: 604 ANDNLKFSQEYESIEPGQQFTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVDGIPGRDG 663
AN+ LK ++ + + + + N KNRY +++ YD+SRV LS +
Sbjct: 25 ANEFLKLKRQSTKYKADKTYPTTVAEKPKNIKKNRYKDILPYDYSRVELSLITSDEDSSY 84
Query: 664 F-IDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYE 711
+FI V+ K GP++ + L IV+ M+YE
Sbjct: 85 INANFIKGVYGPKAYIATQGPLSTTLLDFWRMIWEYSVLIIVMACMEYE 133
Score = 33.9 bits (76), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 1730 PLIVHCSAGVGRTGCFIVID 1749
P+ +HCSAG GRTG ID
Sbjct: 222 PICIHCSAGCGRTGVICAID 241
>pdb|2B49|A Chain A, Crystal Structure Of The Catalytic Domain Of Protein
Tyrosine Phosphatase, Non-Receptor Type 3
Length = 287
Score = 163 bits (413), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 94/272 (34%), Positives = 139/272 (51%), Gaps = 25/272 (9%)
Query: 216 LKFSQEYESIEPGQQFTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVDGIPGSDYINAN 275
++F Q Y +PG T+ + + N KNRY +V+ YD +RV+L DYINA+
Sbjct: 22 IQFEQLYRK-KPGLAITF--AKLPQNLDKNRYKDVLPYDTTRVLLQG-----NEDYINAS 73
Query: 276 YCD----GYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWP 331
Y + N Y+ATQGPL T FW++VW+ + IVM+T L ER R KC QYWP
Sbjct: 74 YVNMEIPAANLVNKYIATQGPLPHTCAQFWQVVWDQKLSLIVMLTTLTERGRTKCHQYWP 133
Query: 332 S-RGTETYGHITVTLQDVQELASYCIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPA 390
+G + Q +Y R ++ E + LQ+ AWPDHGVP+ +
Sbjct: 134 DPPDVMNHGGFHIQCQSEDCTIAYVSREMLVTNTQTGEEHTVTHLQYVAWPDHGVPDDSS 193
Query: 391 PFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKT 450
FL F+ VR++ + P++VHCSAG+GRTG + ++ + + +
Sbjct: 194 DFLEFVNYVRSLRVDSE------------PVLVHCSAGIGRTGVLVTMETAMCLTERNLP 241
Query: 451 VDIYGHVTCLRAQRNYMVQTEDQYMFIHDALL 482
+ V +R QR MVQT QY F+ +A+L
Sbjct: 242 IYPLDIVRKMRDQRAMMVQTSSQYKFVCEAIL 273
Score = 161 bits (407), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 93/273 (34%), Positives = 139/273 (50%), Gaps = 27/273 (9%)
Query: 729 AMVQTESI---EPGQQFTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVDGIPGSDYINA 785
++Q E + +PG T+ + + N KNRY +V+ YD +RV+L DYINA
Sbjct: 20 VLIQFEQLYRKKPGLAITF--AKLPQNLDKNRYKDVLPYDTTRVLLQG-----NEDYINA 72
Query: 786 NYCD----GYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYW 841
+Y + N Y+ATQGPL T FW++VW+ + IVM+T L ER R KC QYW
Sbjct: 73 SYVNMEIPAANLVNKYIATQGPLPHTCAQFWQVVWDQKLSLIVMLTTLTERGRTKCHQYW 132
Query: 842 PS-RGTETYGHITVTLQDVQELASYCIRTFMINKGADSERREIKQLQFTAWPDHGVPEHP 900
P +G + Q +Y R ++ E + LQ+ AWPDHGVP+
Sbjct: 133 PDPPDVMNHGGFHIQCQSEDCTIAYVSREMLVTNTQTGEEHTVTHLQYVAWPDHGVPDDS 192
Query: 901 APFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDK 960
+ FL F+ VR++ + P++VHCSAG+GRTG + ++ + + +
Sbjct: 193 SDFLEFVNYVRSLRVDSE------------PVLVHCSAGIGRTGVLVTMETAMCLTERNL 240
Query: 961 TVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALL 993
+ V +R QR MVQT QY F+ +A+L
Sbjct: 241 PIYPLDIVRKMRDQRAMMVQTSSQYKFVCEAIL 273
Score = 101 bits (252), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 98/205 (47%), Gaps = 46/205 (22%)
Query: 1298 EFKKLSNIRAEPSRFIS-ASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFI 1356
+F++L R +P I+ A LP N KNR +LP +++RV L +G E DYINAS++
Sbjct: 23 QFEQL--YRKKPGLAITFAKLPQNLDKNRYKDVLPYDTTRVLL---QGNE--DYINASYV 75
Query: 1357 D----GYRLRSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR---------- 1402
+ L + YIATQGPL T FW+++W+ +++VMLT L E GR
Sbjct: 76 NMEIPAANLVNKYIATQGPLPHTCAQFWQVVWDQKLSLIVMLTTLTERGRTKCHQYWPDP 135
Query: 1403 ---------------------YVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGF 1441
YV RE VT+ + T+ Q + WP+ GVP F
Sbjct: 136 PDVMNHGGFHIQCQSEDCTIAYVSREMLVTNTQTGEEHTVTHLQYVAWPDHGVPDDSSDF 195
Query: 1442 IDFIGQVHKTKEQFGQDGPITVHCS 1466
++F+ V + P+ VHCS
Sbjct: 196 LEFVNYVRSLRV---DSEPVLVHCS 217
Score = 91.3 bits (225), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 75/154 (48%), Gaps = 4/154 (2%)
Query: 1493 VLIAYLVLFSQEKCHQYWPSERSI-RYEWFVVEPIAEYNMPQYVLREFKVTDARDATSRT 1551
V++ L + KCHQYWP + + F ++ +E YV RE VT+ + T
Sbjct: 115 VMLTTLTERGRTKCHQYWPDPPDVMNHGGFHIQCQSEDCTIAYVSREMLVTNTQTGEEHT 174
Query: 1552 LRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSI 1611
+ Q + WP+ GVP F++F+ V + P+ VHCSAG+GRTGV +T+
Sbjct: 175 VTHLQYVAWPDHGVPDDSSDFLEFVNYVRSLRV---DSEPVLVHCSAGIGRTGVLVTMET 231
Query: 1612 VLERMQYEGVIDLFQTVRILRTQRPAMVQTEHLY 1645
+ + I VR +R QR MVQT Y
Sbjct: 232 AMCLTERNLPIYPLDIVRKMRDQRAMMVQTSSQY 265
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 65/265 (24%), Positives = 106/265 (40%), Gaps = 42/265 (15%)
Query: 504 LMSMEVGDTSTGMELEFKKLSNIRAEPSRFIS-ASLPCNKHKNRLVHILPVESSRVCLTP 562
+ ++ G S + ++F++L R +P I+ A LP N KNR +LP +++RV L
Sbjct: 8 MAQLKKGLESGTVLIQFEQL--YRKKPGLAITFAKLPQNLDKNRYKDVLPYDTTRVLL-- 63
Query: 563 VRGDGFIDFIGQVHKTKE---------QFGQDGPITVHCSRLAQHIENLKANDNLKFS-- 611
G D+I + E GP+ C++ Q + + K + + +
Sbjct: 64 ---QGNEDYINASYVNMEIPAANLVNKYIATQGPLPHTCAQFWQVVWDQKLSLIVMLTTL 120
Query: 612 --------QEYESIEP-------------GQQFTWDHSSMEMNKAKNRYANVIAYDHSRV 650
+Y P + T + S EM + H +
Sbjct: 121 TERGRTKCHQYWPDPPDVMNHGGFHIQCQSEDCTIAYVSREMLVTNTQTGEEHTVTHLQY 180
Query: 651 ILSTVDGIPGRDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQY 710
+ G+P D DF+ V+ + P+ VHCSAG+GRTGV +T+ + +
Sbjct: 181 VAWPDHGVP--DDSSDFLEFVNYVRSLRVDSEPVLVHCSAGIGRTGVLVTMETAMCLTER 238
Query: 711 EGVIDLFQTVRILRTQRPAMVQTES 735
I VR +R QR MVQT S
Sbjct: 239 NLPIYPLDIVRKMRDQRAMMVQTSS 263
Score = 34.7 bits (78), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 1730 PLIVHCSAGVGRTGCFIVIDA 1750
P++VHCSAG+GRTG + ++
Sbjct: 211 PVLVHCSAGIGRTGVLVTMET 231
>pdb|2BZL|A Chain A, Crystal Structure Of The Human Protein Tyrosine
Phosphatase N14 At 1.65 A Resolution
Length = 325
Score = 160 bits (406), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 106/318 (33%), Positives = 166/318 (52%), Gaps = 19/318 (5%)
Query: 177 SDPVEMRRLNFQTPGMVSHPPIPISRLAQHIENLKANDNLKFSQEYESI-EPGQQFTWDH 235
S V++ N MV +P+ + ++ K + + F+ EYE I + +
Sbjct: 8 SSGVDLGTENLYFQSMVDATRVPMDERFRTLKK-KLEEGMVFT-EYEQIPKKKANGIFST 65
Query: 236 SSMEMNKAKNRYANVIAYDHSRV-ILSTVDGIPGSDYINANY----CDGYRKHNAYVATQ 290
+++ N ++R V+ Y+ +RV ++ T + G YINA++ G H Y+ATQ
Sbjct: 66 AALPENAERSRIREVVPYEENRVELIPTKENNTG--YINASHIKVVVGGAEWH--YIATQ 121
Query: 291 GPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTE----TYGHITVTLQ 346
GPL T DFW+MVWE I M+T EE R K +YWP G++ TYG VT +
Sbjct: 122 GPLPHTCHDFWQMVWEQGVNVIAMVTAEEEGGRTKSHRYWPKLGSKHSSATYGKFKVTTK 181
Query: 347 DVQELASYCIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGT 406
+ Y + + R + LQ+T WPDHG PE FL +L ++++ T
Sbjct: 182 FRTDSVCYATTGLKVKHLLSGQERTVWHLQYTDWPDHGCPEDVQGFLSYLEEIQSVRRHT 241
Query: 407 NS-LESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRN 465
NS LE + P P++VHCSAGVGRTG I+ + MI ++H++ V++ + LR QR
Sbjct: 242 NSMLEGTKNRHP--PIVVHCSAGVGRTGVLILSELMIYCLEHNEKVEVPMMLRLLREQRM 299
Query: 466 YMVQTEDQYMFIHDALLE 483
+M+QT QY F++ L++
Sbjct: 300 FMIQTIAQYKFVYQVLIQ 317
Score = 158 bits (399), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 94/258 (36%), Positives = 142/258 (55%), Gaps = 16/258 (6%)
Query: 747 SSMEMNKAKNRYANVIAYDHSRV-ILSTVDGIPGSDYINANY----CDGYRKHNAYVATQ 801
+++ N ++R V+ Y+ +RV ++ T + G YINA++ G H Y+ATQ
Sbjct: 66 AALPENAERSRIREVVPYEENRVELIPTKENNTG--YINASHIKVVVGGAEWH--YIATQ 121
Query: 802 GPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTE----TYGHITVTLQ 857
GPL T DFW+MVWE I M+T EE R K +YWP G++ TYG VT +
Sbjct: 122 GPLPHTCHDFWQMVWEQGVNVIAMVTAEEEGGRTKSHRYWPKLGSKHSSATYGKFKVTTK 181
Query: 858 DVQELASYCIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGT 917
+ Y + + R + LQ+T WPDHG PE FL +L ++++ T
Sbjct: 182 FRTDSVCYATTGLKVKHLLSGQERTVWHLQYTDWPDHGCPEDVQGFLSYLEEIQSVRRHT 241
Query: 918 NS-LESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRN 976
NS LE + P P++VHCSAGVGRTG I+ + MI ++H++ V++ + LR QR
Sbjct: 242 NSMLEGTKNRHP--PIVVHCSAGVGRTGVLILSELMIYCLEHNEKVEVPMMLRLLREQRM 299
Query: 977 YMVQTEDQYMFIHDALLE 994
+M+QT QY F++ L++
Sbjct: 300 FMIQTIAQYKFVYQVLIQ 317
Score = 90.1 bits (222), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 91/214 (42%), Gaps = 46/214 (21%)
Query: 1297 TEFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFI 1356
TE++++ +A F +A+LP N ++R+ ++P E +RV L P + + YINAS I
Sbjct: 49 TEYEQIPKKKAN-GIFSTAALPENAERSRIREVVPYEENRVELIPTKE-NNTGYINASHI 106
Query: 1357 DGY--RLRSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------ 1402
YIATQGPL T DFW+M+WE ++ M+T +E GR
Sbjct: 107 KVVVGGAEWHYIATQGPLPHTCHDFWQMVWEQGVNVIAMVTAEEEGGRTKSHRYWPKLGS 166
Query: 1403 ----------------------YVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDG 1440
Y KV RT+ Q DWP+ G P+ G
Sbjct: 167 KHSSATYGKFKVTTKFRTDSVCYATTGLKVKHLLSGQERTVWHLQYTDWPDHGCPEDVQG 226
Query: 1441 FIDFIGQVHKTKEQF--------GQDGPITVHCS 1466
F+ ++ ++ + + PI VHCS
Sbjct: 227 FLSYLEEIQSVRRHTNSMLEGTKNRHPPIVVHCS 260
Score = 78.2 bits (191), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 69/149 (46%), Gaps = 12/149 (8%)
Query: 1505 KCHQYWPS----ERSIRYEWFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQLIDW 1560
K H+YWP S Y F V + Y KV RT+ Q DW
Sbjct: 156 KSHRYWPKLGSKHSSATYGKFKVTTKFRTDSVCYATTGLKVKHLLSGQERTVWHLQYTDW 215
Query: 1561 PEQGVPKSGDGFIDFIGQVHKTKEQFG--------QDGPITVHCSAGVGRTGVFITLSIV 1612
P+ G P+ GF+ ++ ++ + + PI VHCSAGVGRTGV I ++
Sbjct: 216 PDHGCPEDVQGFLSYLEEIQSVRRHTNSMLEGTKNRHPPIVVHCSAGVGRTGVLILSELM 275
Query: 1613 LERMQYEGVIDLFQTVRILRTQRPAMVQT 1641
+ +++ +++ +R+LR QR M+QT
Sbjct: 276 IYCLEHNEKVEVPMMLRLLREQRMFMIQT 304
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 98/242 (40%), Gaps = 41/242 (16%)
Query: 533 FISASLPCNKHKNRLVHILPVESSRVCLTPVRGD--GFID--FIGQVHKTKE--QFGQDG 586
F +A+LP N ++R+ ++P E +RV L P + + G+I+ I V E G
Sbjct: 63 FSTAALPENAERSRIREVVPYEENRVELIPTKENNTGYINASHIKVVVGGAEWHYIATQG 122
Query: 587 PITVHCSRLAQHIENLKANDNLKFSQEYESIEPGQQFTW-----DHSSMEMNKAKNR--- 638
P+ C Q + N + E E W HSS K K
Sbjct: 123 PLPHTCHDFWQMVWEQGVNVIAMVTAEEEGGRTKSHRYWPKLGSKHSSATYGKFKVTTKF 182
Query: 639 ------YANV------IAYDHSRVI--LSTVD----GIPGR-DGFIDFIGQVHKTKEQFG 679
YA + R + L D G P GF+ ++ ++ +
Sbjct: 183 RTDSVCYATTGLKVKHLLSGQERTVWHLQYTDWPDHGCPEDVQGFLSYLEEIQSVRRHTN 242
Query: 680 --------QDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVIDLFQTVRILRTQRPAMV 731
+ PI VHCSAGVGRTGV I +++ +++ +++ +R+LR QR M+
Sbjct: 243 SMLEGTKNRHPPIVVHCSAGVGRTGVLILSELMIYCLEHNEKVEVPMMLRLLREQRMFMI 302
Query: 732 QT 733
QT
Sbjct: 303 QT 304
Score = 35.8 bits (81), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 16/18 (88%)
Query: 1730 PLIVHCSAGVGRTGCFIV 1747
P++VHCSAGVGRTG I+
Sbjct: 254 PIVVHCSAGVGRTGVLIL 271
>pdb|3OLR|A Chain A, Ptpn22 In Complex With Consensus Phospho-Tyrosine Peptide
1
pdb|3OLR|B Chain B, Ptpn22 In Complex With Consensus Phospho-Tyrosine Peptide
1
pdb|3OLR|C Chain C, Ptpn22 In Complex With Consensus Phospho-Tyrosine Peptide
1
pdb|3OLR|D Chain D, Ptpn22 In Complex With Consensus Phospho-Tyrosine Peptide
1
pdb|3OMH|A Chain A, Crystal Structure Of Ptpn22 In Complex With Skap-Hom
Ptyr75 Peptide
pdb|3OMH|B Chain B, Crystal Structure Of Ptpn22 In Complex With Skap-Hom
Ptyr75 Peptide
pdb|3OMH|C Chain C, Crystal Structure Of Ptpn22 In Complex With Skap-Hom
Ptyr75 Peptide
pdb|3OMH|D Chain D, Crystal Structure Of Ptpn22 In Complex With Skap-Hom
Ptyr75 Peptide
Length = 313
Score = 160 bits (405), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 95/277 (34%), Positives = 139/277 (50%), Gaps = 18/277 (6%)
Query: 212 ANDNLKFSQEYESIEPGQQFTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVDGIPGSDY 271
AN+ LK ++ + + + + N KNRY +++ YD+SRV LS + S Y
Sbjct: 44 ANEFLKLKRQSTKYKADKTYPTTVAEKPKNIKKNRYKDILPYDYSRVELSLITSDEDSSY 103
Query: 272 INANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYW- 330
INAN+ G AY+ATQGPL TL DFWRM+WE + IVM E + KC++YW
Sbjct: 104 INANFIKGVYGPKAYIATQGPLSTTLLDFWRMIWEYSVLIIVMACMEYEMGKKKCERYWA 163
Query: 331 -PSRGTETYGHITVTLQDVQELASYCIRTFMINKGADSERREIKQLQFTAWPDHGVPEHP 389
P +G +V+ + + + Y IRT + +SE R I Q + WPDH VP
Sbjct: 164 EPGEMQLEFGPFSVSCEAEKRKSDYIIRTLKVK--FNSETRTIYQFHYKNWPDHDVPSSI 221
Query: 390 APFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHD- 448
P L + VR E V P+ +H SAG GRTG ID +K
Sbjct: 222 DPILELIWDVRCYQ------EDDSV-----PICIHSSAGCGRTGVICAIDYTWMLLKDGI 270
Query: 449 --KTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLE 483
+ ++ + +R QR +VQT++QY +++A+LE
Sbjct: 271 IPENFSVFSLIREMRTQRPSLVQTQEQYELVYNAVLE 307
Score = 158 bits (400), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 91/248 (36%), Positives = 128/248 (51%), Gaps = 18/248 (7%)
Query: 752 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 811
N KNRY +++ YD+SRV LS + S YINAN+ G AY+ATQGPL TL DF
Sbjct: 73 NIKKNRYKDILPYDYSRVELSLITSDEDSSYINANFIKGVYGPKAYIATQGPLSTTLLDF 132
Query: 812 WRMVWELRSVTIVMMTKLEERTRIKCDQYW--PSRGTETYGHITVTLQDVQELASYCIRT 869
WRM+WE + IVM E + KC++YW P +G +V+ + + + Y IRT
Sbjct: 133 WRMIWEYSVLIIVMACMEYEMGKKKCERYWAEPGEMQLEFGPFSVSCEAEKRKSDYIIRT 192
Query: 870 FMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPV 929
+ +SE R I Q + WPDH VP P L + VR E V
Sbjct: 193 LKVK--FNSETRTIYQFHYKNWPDHDVPSSIDPILELIWDVRCYQ------EDDSV---- 240
Query: 930 GPLIVHCSAGVGRTGCFIVIDAMIERIKHD---KTVDIYGHVTCLRAQRNYMVQTEDQYM 986
P+ +H SAG GRTG ID +K + ++ + +R QR +VQT++QY
Sbjct: 241 -PICIHSSAGCGRTGVICAIDYTWMLLKDGIIPENFSVFSLIREMRTQRPSLVQTQEQYE 299
Query: 987 FIHDALLE 994
+++A+LE
Sbjct: 300 LVYNAVLE 307
Score = 103 bits (256), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 88/184 (47%), Gaps = 36/184 (19%)
Query: 1315 ASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFIDGYRLRSAYIATQGPLAD 1374
A P N KNR ILP + SRV L+ + E S YINA+FI G AYIATQGPL+
Sbjct: 68 AEKPKNIKKNRYKDILPYDYSRVELSLITSDEDSSYINANFIKGVYGPKAYIATQGPLST 127
Query: 1375 TTEDFWRMLWEHNSTIVVMLTKLKEMGR-------------------------------- 1402
T DFWRM+WE++ I+VM EMG+
Sbjct: 128 TLLDFWRMIWEYSVLIIVMACMEYEMGKKKCERYWAEPGEMQLEFGPFSVSCEAEKRKSD 187
Query: 1403 YVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPIT 1462
Y++R KV ++ +RT+ QF +WP+ VP S D ++ I V +E PI
Sbjct: 188 YIIRTLKV--KFNSETRTIYQFHYKNWPDHDVPSSIDPILELIWDVRCYQED--DSVPIC 243
Query: 1463 VHCS 1466
+H S
Sbjct: 244 IHSS 247
Score = 85.1 bits (209), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 83/164 (50%), Gaps = 15/164 (9%)
Query: 1492 SVLIAYLVLFSQE----KCHQYW--PSERSIRYEWFVVEPIAEYNMPQYVLREFKVTDAR 1545
SVLI + E KC +YW P E + + F V AE Y++R KV
Sbjct: 140 SVLIIVMACMEYEMGKKKCERYWAEPGEMQLEFGPFSVSCEAEKRKSDYIIRTLKV--KF 197
Query: 1546 DATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGV 1605
++ +RT+ QF +WP+ VP S D ++ I V +E PI +H SAG GRTGV
Sbjct: 198 NSETRTIYQFHYKNWPDHDVPSSIDPILELIWDVRCYQED--DSVPICIHSSAGCGRTGV 255
Query: 1606 FITLSIVLERMQYEGVI----DLFQTVRILRTQRPAMVQTEHLY 1645
+ ++ +G+I +F +R +RTQRP++VQT+ Y
Sbjct: 256 ICAIDYTWMLLK-DGIIPENFSVFSLIREMRTQRPSLVQTQEQY 298
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 96/229 (41%), Gaps = 31/229 (13%)
Query: 536 ASLPCNKHKNRLVHILPVESSRVCLTPVRGD---GFID--FIGQVHKTKEQFGQDGPITV 590
A P N KNR ILP + SRV L+ + D +I+ FI V+ K GP++
Sbjct: 68 AEKPKNIKKNRYKDILPYDYSRVELSLITSDEDSSYINANFIKGVYGPKAYIATQGPLST 127
Query: 591 HCSRLAQHIENLKANDNLKFSQEYES---------IEPGQ---QFTWDHSSMEMNKAKNR 638
+ I + EYE EPG+ +F S E K K+
Sbjct: 128 TLLDFWRMIWEYSVLIIVMACMEYEMGKKKCERYWAEPGEMQLEFGPFSVSCEAEKRKSD 187
Query: 639 Y----ANVIAYDHSRVILST-VDGIPGRD--GFIDFIGQVHKTKEQFGQDG--PITVHCS 689
Y V +R I P D ID I ++ + +D PI +H S
Sbjct: 188 YIIRTLKVKFNSETRTIYQFHYKNWPDHDVPSSIDPILELIWDVRCYQEDDSVPICIHSS 247
Query: 690 AGVGRTGVFITLSIVLERMQYEGVI----DLFQTVRILRTQRPAMVQTE 734
AG GRTGV + ++ +G+I +F +R +RTQRP++VQT+
Sbjct: 248 AGCGRTGVICAIDYTWMLLK-DGIIPENFSVFSLIREMRTQRPSLVQTQ 295
Score = 38.1 bits (87), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 1/109 (0%)
Query: 604 ANDNLKFSQEYESIEPGQQFTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVDGIPGRDG 663
AN+ LK ++ + + + + N KNRY +++ YD+SRV LS +
Sbjct: 44 ANEFLKLKRQSTKYKADKTYPTTVAEKPKNIKKNRYKDILPYDYSRVELSLITSDEDSSY 103
Query: 664 F-IDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYE 711
+FI V+ K GP++ + L IV+ M+YE
Sbjct: 104 INANFIKGVYGPKAYIATQGPLSTTLLDFWRMIWEYSVLIIVMACMEYE 152
>pdb|2I1Y|A Chain A, Crystal Structure Of The Phosphatase Domain Of Human Ptp
Ia-2
pdb|2I1Y|B Chain B, Crystal Structure Of The Phosphatase Domain Of Human Ptp
Ia-2
Length = 301
Score = 158 bits (400), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 103/293 (35%), Positives = 150/293 (51%), Gaps = 28/293 (9%)
Query: 203 LAQHIENLKANDNLKFSQEYESI-----EPGQQFTWDHSSMEMNKAKNRYANVIAYDHSR 257
LA ++L+ D L ++E++++ EP T + E N KNR+ + + YDH+R
Sbjct: 18 LAYMEDHLRNRDRL--AKEWQALCAYQAEPNTCAT---AQGEGNIKKNRHPDFLPYDHAR 72
Query: 258 VILSTVDGIPGSDYINAN-YCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMT 316
+ L SDYINA+ + + AY+ATQGPL T+ DFW+MVWE IVM+T
Sbjct: 73 IKLKVESSPSRSDYINASPIIEHDPRMPAYIATQGPLSHTIADFWQMVWESGCTVIVMLT 132
Query: 317 KLEERTRIKCDQYWPSRGTETYGHITVTLQDVQE---LASYCIRTFMINKGADSERREIK 373
L E +CD+YWP G Y V L V E + +R+F + E R +
Sbjct: 133 PLVEDGVKQCDRYWPDEGASLYHVYEVNL--VSEHIWCEDFLVRSFYLKNVQTQETRTLT 190
Query: 374 QLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTG 433
Q F +WP G P P L F R+V G + P+IVHCS G GRTG
Sbjct: 191 QFHFLSWPAEGTPASTRPLLDFRRKVNKCYRGRSC-----------PIIVHCSDGAGRTG 239
Query: 434 CFIVIDAMIERI-KHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLEAV 485
+I+ID ++ R+ K K +DI + +R QR +V+++DQ+ F A+ E V
Sbjct: 240 TYILIDMVLNRMAKGVKEIDIAATLEHVRDQRPGLVRSKDQFEFALTAVAEEV 292
Score = 158 bits (400), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 94/252 (37%), Positives = 131/252 (51%), Gaps = 18/252 (7%)
Query: 750 EMNKAKNRYANVIAYDHSRVILSTVDGIPGSDYINAN-YCDGYRKHNAYVATQGPLQETL 808
E N KNR+ + + YDH+R+ L SDYINA+ + + AY+ATQGPL T+
Sbjct: 54 EGNIKKNRHPDFLPYDHARIKLKVESSPSRSDYINASPIIEHDPRMPAYIATQGPLSHTI 113
Query: 809 GDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDVQE---LASY 865
DFW+MVWE IVM+T L E +CD+YWP G Y V L V E +
Sbjct: 114 ADFWQMVWESGCTVIVMLTPLVEDGVKQCDRYWPDEGASLYHVYEVNL--VSEHIWCEDF 171
Query: 866 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 925
+R+F + E R + Q F +WP G P P L F R+V G +
Sbjct: 172 LVRSFYLKNVQTQETRTLTQFHFLSWPAEGTPASTRPLLDFRRKVNKCYRGRSC------ 225
Query: 926 NLPVGPLIVHCSAGVGRTGCFIVIDAMIERI-KHDKTVDIYGHVTCLRAQRNYMVQTEDQ 984
P+IVHCS G GRTG +I+ID ++ R+ K K +DI + +R QR +V+++DQ
Sbjct: 226 -----PIIVHCSDGAGRTGTYILIDMVLNRMAKGVKEIDIAATLEHVRDQRPGLVRSKDQ 280
Query: 985 YMFIHDALLEAV 996
+ F A+ E V
Sbjct: 281 FEFALTAVAEEV 292
Score = 108 bits (271), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 98/205 (47%), Gaps = 34/205 (16%)
Query: 1294 RGKTEFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINA 1353
R E++ L +AEP+ +A N KNR LP + +R+ L SDYINA
Sbjct: 30 RLAKEWQALCAYQAEPNTCATAQGEGNIKKNRHPDFLPYDHARIKLKVESSPSRSDYINA 89
Query: 1354 SFIDGYRLR-SAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMG----------- 1401
S I + R AYIATQGPL+ T DFW+M+WE T++VMLT L E G
Sbjct: 90 SPIIEHDPRMPAYIATQGPLSHTIADFWQMVWESGCTVIVMLTPLVEDGVKQCDRYWPDE 149
Query: 1402 --------------------RYVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGF 1441
+++R F + + + +RTL QF + WP +G P S
Sbjct: 150 GASLYHVYEVNLVSEHIWCEDFLVRSFYLKNVQTQETRTLTQFHFLSWPAEGTPASTRPL 209
Query: 1442 IDFIGQVHKTKEQFGQDGPITVHCS 1466
+DF +V+K G+ PI VHCS
Sbjct: 210 LDFRRKVNKCYR--GRSCPIIVHCS 232
Score = 99.0 bits (245), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 92/159 (57%), Gaps = 8/159 (5%)
Query: 1489 SFCSVLIAY--LVLFSQEKCHQYWPSERSIRYEWFVVEPIAEYNMPQ-YVLREFKVTDAR 1545
S C+V++ LV ++C +YWP E + Y + V ++E+ + +++R F + + +
Sbjct: 123 SGCTVIVMLTPLVEDGVKQCDRYWPDEGASLYHVYEVNLVSEHIWCEDFLVRSFYLKNVQ 182
Query: 1546 DATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGV 1605
+RTL QF + WP +G P S +DF +V+K G+ PI VHCS G GRTG
Sbjct: 183 TQETRTLTQFHFLSWPAEGTPASTRPLLDFRRKVNKCYR--GRSCPIIVHCSDGAGRTGT 240
Query: 1606 FITLSIVLERMQYEGV--IDLFQTVRILRTQRPAMVQTE 1642
+I + +VL RM +GV ID+ T+ +R QRP +V+++
Sbjct: 241 YILIDMVLNRMA-KGVKEIDIAATLEHVRDQRPGLVRSK 278
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 5/73 (6%)
Query: 664 FIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGV--IDLFQTVR 721
+DF +V+K G+ PI VHCS G GRTG +I + +VL RM +GV ID+ T+
Sbjct: 209 LLDFRRKVNKCYR--GRSCPIIVHCSDGAGRTGTYILIDMVLNRMA-KGVKEIDIAATLE 265
Query: 722 ILRTQRPAMVQTE 734
+R QRP +V+++
Sbjct: 266 HVRDQRPGLVRSK 278
Score = 37.0 bits (84), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 14/20 (70%), Positives = 17/20 (85%)
Query: 1730 PLIVHCSAGVGRTGCFIVID 1749
P+IVHCS G GRTG +I+ID
Sbjct: 226 PIIVHCSDGAGRTGTYILID 245
>pdb|3BRH|A Chain A, Protein Tyrosine Phosphatase Ptpn-22 (Lyp) Bound To The
Mono-Phosphorylated Lck Active Site Peptide
pdb|3BRH|B Chain B, Protein Tyrosine Phosphatase Ptpn-22 (Lyp) Bound To The
Mono-Phosphorylated Lck Active Site Peptide
Length = 310
Score = 156 bits (395), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 94/277 (33%), Positives = 138/277 (49%), Gaps = 18/277 (6%)
Query: 212 ANDNLKFSQEYESIEPGQQFTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVDGIPGSDY 271
AN+ LK ++ + + + + N KNRY +++ YD+SRV LS + S Y
Sbjct: 25 ANEFLKLKRQSTKYKADKTYPTTVAEKPKNIKKNRYKDILPYDYSRVELSLITSDEDSSY 84
Query: 272 INANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYW- 330
INAN+ G AY+ATQGPL TL DFWRM+WE + IVM E + KC++YW
Sbjct: 85 INANFIKGVYGPKAYIATQGPLSTTLLDFWRMIWEYSVLIIVMACMEYEMGKKKCERYWA 144
Query: 331 -PSRGTETYGHITVTLQDVQELASYCIRTFMINKGADSERREIKQLQFTAWPDHGVPEHP 389
P +G +V+ + + + Y IRT + +SE R I Q + WP H VP
Sbjct: 145 EPGEMQLEFGPFSVSCEAEKRKSDYIIRTLKVK--FNSETRTIYQFHYKNWPAHDVPSSI 202
Query: 390 APFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHD- 448
P L + VR E V P+ +H SAG GRTG ID +K
Sbjct: 203 DPILELIWDVRCYQ------EDDSV-----PICIHSSAGCGRTGVICAIDYTWMLLKDGI 251
Query: 449 --KTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLE 483
+ ++ + +R QR +VQT++QY +++A+LE
Sbjct: 252 IPENFSVFSLIREMRTQRPSLVQTQEQYELVYNAVLE 288
Score = 155 bits (391), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 90/248 (36%), Positives = 127/248 (51%), Gaps = 18/248 (7%)
Query: 752 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 811
N KNRY +++ YD+SRV LS + S YINAN+ G AY+ATQGPL TL DF
Sbjct: 54 NIKKNRYKDILPYDYSRVELSLITSDEDSSYINANFIKGVYGPKAYIATQGPLSTTLLDF 113
Query: 812 WRMVWELRSVTIVMMTKLEERTRIKCDQYW--PSRGTETYGHITVTLQDVQELASYCIRT 869
WRM+WE + IVM E + KC++YW P +G +V+ + + + Y IRT
Sbjct: 114 WRMIWEYSVLIIVMACMEYEMGKKKCERYWAEPGEMQLEFGPFSVSCEAEKRKSDYIIRT 173
Query: 870 FMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPV 929
+ +SE R I Q + WP H VP P L + VR E V
Sbjct: 174 LKVK--FNSETRTIYQFHYKNWPAHDVPSSIDPILELIWDVRCYQ------EDDSV---- 221
Query: 930 GPLIVHCSAGVGRTGCFIVIDAMIERIKHD---KTVDIYGHVTCLRAQRNYMVQTEDQYM 986
P+ +H SAG GRTG ID +K + ++ + +R QR +VQT++QY
Sbjct: 222 -PICIHSSAGCGRTGVICAIDYTWMLLKDGIIPENFSVFSLIREMRTQRPSLVQTQEQYE 280
Query: 987 FIHDALLE 994
+++A+LE
Sbjct: 281 LVYNAVLE 288
Score = 102 bits (253), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 87/184 (47%), Gaps = 36/184 (19%)
Query: 1315 ASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFIDGYRLRSAYIATQGPLAD 1374
A P N KNR ILP + SRV L+ + E S YINA+FI G AYIATQGPL+
Sbjct: 49 AEKPKNIKKNRYKDILPYDYSRVELSLITSDEDSSYINANFIKGVYGPKAYIATQGPLST 108
Query: 1375 TTEDFWRMLWEHNSTIVVMLTKLKEMGR-------------------------------- 1402
T DFWRM+WE++ I+VM EMG+
Sbjct: 109 TLLDFWRMIWEYSVLIIVMACMEYEMGKKKCERYWAEPGEMQLEFGPFSVSCEAEKRKSD 168
Query: 1403 YVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPIT 1462
Y++R KV ++ +RT+ QF +WP VP S D ++ I V +E PI
Sbjct: 169 YIIRTLKV--KFNSETRTIYQFHYKNWPAHDVPSSIDPILELIWDVRCYQE--DDSVPIC 224
Query: 1463 VHCS 1466
+H S
Sbjct: 225 IHSS 228
Score = 84.0 bits (206), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 82/164 (50%), Gaps = 15/164 (9%)
Query: 1492 SVLIAYLVLFSQE----KCHQYW--PSERSIRYEWFVVEPIAEYNMPQYVLREFKVTDAR 1545
SVLI + E KC +YW P E + + F V AE Y++R KV
Sbjct: 121 SVLIIVMACMEYEMGKKKCERYWAEPGEMQLEFGPFSVSCEAEKRKSDYIIRTLKV--KF 178
Query: 1546 DATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGV 1605
++ +RT+ QF +WP VP S D ++ I V +E PI +H SAG GRTGV
Sbjct: 179 NSETRTIYQFHYKNWPAHDVPSSIDPILELIWDVRCYQE--DDSVPICIHSSAGCGRTGV 236
Query: 1606 FITLSIVLERMQYEGVI----DLFQTVRILRTQRPAMVQTEHLY 1645
+ ++ +G+I +F +R +RTQRP++VQT+ Y
Sbjct: 237 ICAIDYTWMLLK-DGIIPENFSVFSLIREMRTQRPSLVQTQEQY 279
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 95/231 (41%), Gaps = 35/231 (15%)
Query: 536 ASLPCNKHKNRLVHILPVESSRVCLTPVRGD---GFID--FIGQVHKTKEQFGQDGPITV 590
A P N KNR ILP + SRV L+ + D +I+ FI V+ K GP++
Sbjct: 49 AEKPKNIKKNRYKDILPYDYSRVELSLITSDEDSSYINANFIKGVYGPKAYIATQGPLST 108
Query: 591 HCSRLAQHIENLKANDNLKFSQEYES---------IEPGQ---QFTWDHSSMEMNKAKNR 638
+ I + EYE EPG+ +F S E K K+
Sbjct: 109 TLLDFWRMIWEYSVLIIVMACMEYEMGKKKCERYWAEPGEMQLEFGPFSVSCEAEKRKSD 168
Query: 639 Y----ANVIAYDHSRVILST------VDGIPGR-DGFIDFIGQVHKTKEQFGQDGPITVH 687
Y V +R I +P D ++ I V +E PI +H
Sbjct: 169 YIIRTLKVKFNSETRTIYQFHYKNWPAHDVPSSIDPILELIWDVRCYQE--DDSVPICIH 226
Query: 688 CSAGVGRTGVFITLSIVLERMQYEGVI----DLFQTVRILRTQRPAMVQTE 734
SAG GRTGV + ++ +G+I +F +R +RTQRP++VQT+
Sbjct: 227 SSAGCGRTGVICAIDYTWMLLK-DGIIPENFSVFSLIREMRTQRPSLVQTQ 276
Score = 37.7 bits (86), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 1/109 (0%)
Query: 604 ANDNLKFSQEYESIEPGQQFTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVDGIPGRDG 663
AN+ LK ++ + + + + N KNRY +++ YD+SRV LS +
Sbjct: 25 ANEFLKLKRQSTKYKADKTYPTTVAEKPKNIKKNRYKDILPYDYSRVELSLITSDEDSSY 84
Query: 664 F-IDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYE 711
+FI V+ K GP++ + L IV+ M+YE
Sbjct: 85 INANFIKGVYGPKAYIATQGPLSTTLLDFWRMIWEYSVLIIVMACMEYE 133
>pdb|2OC3|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Protein
Tyrosine Phosphatase Non-Receptor Type 18
Length = 303
Score = 147 bits (371), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 93/245 (37%), Positives = 123/245 (50%), Gaps = 22/245 (8%)
Query: 241 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 300
N KNRY +V+ YD +RVILS + SDYIN N+ G AY+ATQGPL TL DF
Sbjct: 60 NVRKNRYKDVLPYDQTRVILSLLQEEGHSDYINGNFIRGVDGSLAYIATQGPLPHTLLDF 119
Query: 301 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETY-GHITVTLQDVQEL-ASYCIRT 358
WR+VWE I+M + E R +C++YW G +TL + L +RT
Sbjct: 120 WRLVWEFGVKVILMACREIENGRKRCERYWAQEQEPLQTGLFCITLIKEKWLNEDIMLRT 179
Query: 359 FMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPV 418
+ E R + QLQ+ +WPD GVP P L + R L+ SG
Sbjct: 180 LKVT--FQKESRSVYQLQYMSWPDRGVPSSPDHMLAMVEEAR-------RLQGSGPE--- 227
Query: 419 GPLIVHCSAGVGRTGCFIVID-----AMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQ 473
PL VHCSAG GRTG +D + + I D ++ V +R QR VQTE+Q
Sbjct: 228 -PLCVHCSAGCGRTGVLCTVDYVRQLLLTQMIPPD--FSLFDVVLKMRKQRPAAVQTEEQ 284
Query: 474 YMFIH 478
Y F++
Sbjct: 285 YRFLY 289
Score = 147 bits (371), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 93/245 (37%), Positives = 123/245 (50%), Gaps = 22/245 (8%)
Query: 752 NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDF 811
N KNRY +V+ YD +RVILS + SDYIN N+ G AY+ATQGPL TL DF
Sbjct: 60 NVRKNRYKDVLPYDQTRVILSLLQEEGHSDYINGNFIRGVDGSLAYIATQGPLPHTLLDF 119
Query: 812 WRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETY-GHITVTLQDVQEL-ASYCIRT 869
WR+VWE I+M + E R +C++YW G +TL + L +RT
Sbjct: 120 WRLVWEFGVKVILMACREIENGRKRCERYWAQEQEPLQTGLFCITLIKEKWLNEDIMLRT 179
Query: 870 FMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPV 929
+ E R + QLQ+ +WPD GVP P L + R L+ SG
Sbjct: 180 LKVT--FQKESRSVYQLQYMSWPDRGVPSSPDHMLAMVEEAR-------RLQGSGPE--- 227
Query: 930 GPLIVHCSAGVGRTGCFIVID-----AMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQ 984
PL VHCSAG GRTG +D + + I D ++ V +R QR VQTE+Q
Sbjct: 228 -PLCVHCSAGCGRTGVLCTVDYVRQLLLTQMIPPD--FSLFDVVLKMRKQRPAAVQTEEQ 284
Query: 985 YMFIH 989
Y F++
Sbjct: 285 YRFLY 289
Score = 97.1 bits (240), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 89/186 (47%), Gaps = 36/186 (19%)
Query: 1313 ISASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFIDGYRLRSAYIATQGPL 1372
++ S P N KNR +LP + +RV L+ ++ SDYIN +FI G AYIATQGPL
Sbjct: 53 VAGSRPENVRKNRYKDVLPYDQTRVILSLLQEEGHSDYINGNFIRGVDGSLAYIATQGPL 112
Query: 1373 ADTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------------------------ 1402
T DFWR++WE +++M + E GR
Sbjct: 113 PHTLLDFWRLVWEFGVKVILMACREIENGRKRCERYWAQEQEPLQTGLFCITLIKEKWLN 172
Query: 1403 --YVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGP 1460
+LR KVT ++ SR++ Q Q + WP++GVP S D + + + + Q P
Sbjct: 173 EDIMLRTLKVTFQKE--SRSVYQLQYMSWPDRGVPSSPDHMLAMVEEARRL--QGSGPEP 228
Query: 1461 ITVHCS 1466
+ VHCS
Sbjct: 229 LCVHCS 234
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 80/149 (53%), Gaps = 9/149 (6%)
Query: 1502 SQEKCHQYWPSERS-IRYEWFVVEPIAEYNMPQYV-LREFKVTDARDATSRTLRQFQLID 1559
+++C +YW E+ ++ F + I E + + + LR KVT ++ SR++ Q Q +
Sbjct: 141 GRKRCERYWAQEQEPLQTGLFCITLIKEKWLNEDIMLRTLKVTFQKE--SRSVYQLQYMS 198
Query: 1560 WPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYE 1619
WP++GVP S D + + + + Q P+ VHCSAG GRTGV T+ V + + +
Sbjct: 199 WPDRGVPSSPDHMLAMVEEARRL--QGSGPEPLCVHCSAGCGRTGVLCTVDYVRQLLLTQ 256
Query: 1620 GV---IDLFQTVRILRTQRPAMVQTEHLY 1645
+ LF V +R QRPA VQTE Y
Sbjct: 257 MIPPDFSLFDVVLKMRKQRPAAVQTEEQY 285
Score = 60.5 bits (145), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 98/232 (42%), Gaps = 33/232 (14%)
Query: 534 ISASLPCNKHKNRLVHILPVESSRVCLTPVRGDGFID-----FIGQVHKTKEQFGQDGPI 588
++ S P N KNR +LP + +RV L+ ++ +G D FI V + GP+
Sbjct: 53 VAGSRPENVRKNRYKDVLPYDQTRVILSLLQEEGHSDYINGNFIRGVDGSLAYIATQGPL 112
Query: 589 ---TVHCSRL------------AQHIENLKANDNLKFSQEYESIEPGQ------QFTWDH 627
+ RL + IEN + ++QE E ++ G + W +
Sbjct: 113 PHTLLDFWRLVWEFGVKVILMACREIENGRKRCERYWAQEQEPLQTGLFCITLIKEKWLN 172
Query: 628 SSMEMNKAKNRYANVIAYDHSRVILSTVD-GIPGR-DGFIDFIGQVHKTKEQFGQDGPIT 685
+ + K + + +S D G+P D + + + + Q P+
Sbjct: 173 EDIMLRTLKVTFQKESRSVYQLQYMSWPDRGVPSSPDHMLAMVEEARRL--QGSGPEPLC 230
Query: 686 VHCSAGVGRTGVFITLSIVLERMQYEGV---IDLFQTVRILRTQRPAMVQTE 734
VHCSAG GRTGV T+ V + + + + LF V +R QRPA VQTE
Sbjct: 231 VHCSAGCGRTGVLCTVDYVRQLLLTQMIPPDFSLFDVVLKMRKQRPAAVQTE 282
Score = 34.3 bits (77), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 15/24 (62%)
Query: 1730 PLIVHCSAGVGRTGCFIVIDAKEQ 1753
PL VHCSAG GRTG +D Q
Sbjct: 228 PLCVHCSAGCGRTGVLCTVDYVRQ 251
>pdb|4AZ1|A Chain A, Crystal Structure Of The Trypanosoma Cruzi Protein
Tyrosine Phosphatase Tcptp1, A Potential Therapeutic
Target For Chagas' Disease
pdb|4AZ1|B Chain B, Crystal Structure Of The Trypanosoma Cruzi Protein
Tyrosine Phosphatase Tcptp1, A Potential Therapeutic
Target For Chagas' Disease
Length = 302
Score = 120 bits (302), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 82/258 (31%), Positives = 129/258 (50%), Gaps = 33/258 (12%)
Query: 241 NKAKNRYANVIAYDHSRVILSTVDGIPGSD---YINANYCDGYRKHNAYVATQGPLQETL 297
N+ KNRY +++A + + + V PG+ YIN N D H +VA Q P+ + +
Sbjct: 45 NRHKNRYLDILANEAT--LYPQVTDAPGASTPYYINGNLIDLDLPHK-FVACQAPVVQGI 101
Query: 298 GDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWP-SRGTETY---GHITVTLQDVQELAS 353
DF M++E + ++M+TKLEE +K D+YWP RG+ + G+ +T+ + A
Sbjct: 102 PDFLAMLYEKKISLVIMVTKLEEGGFVKADRYWPEERGSGSIAVSGNCGLTISEDPGKAY 161
Query: 354 YC------IRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTN 407
R ++I + AD + Q+Q+T WPDHG+P+ L V+
Sbjct: 162 EVEDELKITRRYLILQRADEPPHKFTQVQYTGWPDHGIPQSATSLEALLTNVK------- 214
Query: 408 SLESSGVNLPVG-PLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVD--IYGHVTCLRAQR 464
N P P++VHCSAG+GRTG I A + ++ D +Y V+ +R QR
Sbjct: 215 -------NSPTTVPVVVHCSAGIGRTGTLIGAYAALTHLERGTLTDTTVYDVVSAMRRQR 267
Query: 465 NYMVQTEDQYMFIHDALL 482
MVQ +QY I+ L+
Sbjct: 268 FGMVQRMEQYFVIYLTLM 285
Score = 120 bits (302), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 82/258 (31%), Positives = 129/258 (50%), Gaps = 33/258 (12%)
Query: 752 NKAKNRYANVIAYDHSRVILSTVDGIPGSD---YINANYCDGYRKHNAYVATQGPLQETL 808
N+ KNRY +++A + + + V PG+ YIN N D H +VA Q P+ + +
Sbjct: 45 NRHKNRYLDILANEAT--LYPQVTDAPGASTPYYINGNLIDLDLPHK-FVACQAPVVQGI 101
Query: 809 GDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWP-SRGTETY---GHITVTLQDVQELAS 864
DF M++E + ++M+TKLEE +K D+YWP RG+ + G+ +T+ + A
Sbjct: 102 PDFLAMLYEKKISLVIMVTKLEEGGFVKADRYWPEERGSGSIAVSGNCGLTISEDPGKAY 161
Query: 865 YC------IRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTN 918
R ++I + AD + Q+Q+T WPDHG+P+ L V+
Sbjct: 162 EVEDELKITRRYLILQRADEPPHKFTQVQYTGWPDHGIPQSATSLEALLTNVK------- 214
Query: 919 SLESSGVNLPVG-PLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVD--IYGHVTCLRAQR 975
N P P++VHCSAG+GRTG I A + ++ D +Y V+ +R QR
Sbjct: 215 -------NSPTTVPVVVHCSAGIGRTGTLIGAYAALTHLERGTLTDTTVYDVVSAMRRQR 267
Query: 976 NYMVQTEDQYMFIHDALL 993
MVQ +QY I+ L+
Sbjct: 268 FGMVQRMEQYFVIYLTLM 285
Score = 64.3 bits (155), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 92/237 (38%), Gaps = 57/237 (24%)
Query: 1294 RGKTEFKKLSNIRAEPSRFIS-ASLPCNKHKNRLVHILPVESSRV-CLTPVRGIEGSDYI 1351
R + EF L +R E R IS A+ N+HKNR + IL E++ +T G YI
Sbjct: 20 RVQREFSLL--LRQEDPRSISFATSLKNRHKNRYLDILANEATLYPQVTDAPGASTPYYI 77
Query: 1352 NASFIDGYRLRSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMG-----RY--- 1403
N + ID L ++A Q P+ DF ML+E ++V+M+TKL+E G RY
Sbjct: 78 NGNLID-LDLPHKFVACQAPVVQGIPDFLAMLYEKKISLVIMVTKLEEGGFVKADRYWPE 136
Query: 1404 --------------------------------VLREFKVTDARDATSRTLRQFQLIDWPE 1431
+ R + + D Q Q WP+
Sbjct: 137 ERGSGSIAVSGNCGLTISEDPGKAYEVEDELKITRRYLILQRADEPPHKFTQVQYTGWPD 196
Query: 1432 QGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCS--------LLSLHINLTQSEWG 1480
G+P+S + V + P+ VHCS L+ + LT E G
Sbjct: 197 HGIPQSATSLEALLTNVKNSPTTV----PVVVHCSAGIGRTGTLIGAYAALTHLERG 249
Score = 60.5 bits (145), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 61/153 (39%), Gaps = 16/153 (10%)
Query: 1505 KCHQYWPSER---SIRYEWFVVEPIAEYNMPQY-------VLREFKVTDARDATSRTLRQ 1554
K +YWP ER SI I+E Y + R + + D Q
Sbjct: 129 KADRYWPEERGSGSIAVSGNCGLTISEDPGKAYEVEDELKITRRYLILQRADEPPHKFTQ 188
Query: 1555 FQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLE 1614
Q WP+ G+P+S + V + P+ VHCSAG+GRTG I L
Sbjct: 189 VQYTGWPDHGIPQSATSLEALLTNVKNSPTTV----PVVVHCSAGIGRTGTLIGAYAALT 244
Query: 1615 RMQYEGVID--LFQTVRILRTQRPAMVQTEHLY 1645
++ + D ++ V +R QR MVQ Y
Sbjct: 245 HLERGTLTDTTVYDVVSAMRRQRFGMVQRMEQY 277
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 683 PITVHCSAGVGRTGVFITLSIVLERMQYEGVID--LFQTVRILRTQRPAMVQ 732
P+ VHCSAG+GRTG I L ++ + D ++ V +R QR MVQ
Sbjct: 221 PVVVHCSAGIGRTGTLIGAYAALTHLERGTLTDTTVYDVVSAMRRQRFGMVQ 272
Score = 34.3 bits (77), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 12/17 (70%), Positives = 15/17 (88%)
Query: 1730 PLIVHCSAGVGRTGCFI 1746
P++VHCSAG+GRTG I
Sbjct: 221 PVVVHCSAGIGRTGTLI 237
>pdb|3M4U|A Chain A, Crystal Structure Of Trypanosoma Brucei Protein Tyrosine
Phosphatase Tbptp1
pdb|3M4U|B Chain B, Crystal Structure Of Trypanosoma Brucei Protein Tyrosine
Phosphatase Tbptp1
Length = 306
Score = 110 bits (275), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 80/259 (30%), Positives = 124/259 (47%), Gaps = 32/259 (12%)
Query: 241 NKAKNRYANVIAYDHSRV--ILSTVDGIPGS-DYINANYCDGYRKHNAYVATQGPLQETL 297
N+ KNRY +++A + + +L V PG YIN N D H +VA Q P+ + +
Sbjct: 45 NRHKNRYLDILANEETIYPPVLKAVGAQPGRYPYINGNLIDLDLPHT-FVACQAPVPQGV 103
Query: 298 GDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETY-----GHITVTLQDVQELA 352
DF + E + +VM+TKL E +K ++YWP ++ GH + + E A
Sbjct: 104 PDFLETLSEKKVDLVVMLTKLREGGVLKAERYWPEEEEDSLSFPESGHDAIKVTRDAE-A 162
Query: 353 SY-------CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPG 405
SY +R ++ + Q+Q+ WPDHGVPE A F L ++
Sbjct: 163 SYEVDAELDIVRRPLVIHVPGKPMHRVLQVQYVGWPDHGVPESAASFDELLSVIK----- 217
Query: 406 TNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVD--IYGHVTCLRAQ 463
N + +S P++VHCSAG+GRTG I A + I+ D +Y V ++ +
Sbjct: 218 -NCVTTS-------PILVHCSAGIGRTGTLIGAYAALLHIERGILTDSTVYSIVAAMKQK 269
Query: 464 RNYMVQTEDQYMFIHDALL 482
R MVQ +QY I+ +L
Sbjct: 270 RFGMVQRLEQYAVIYMTVL 288
Score = 110 bits (275), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 80/259 (30%), Positives = 124/259 (47%), Gaps = 32/259 (12%)
Query: 752 NKAKNRYANVIAYDHSRV--ILSTVDGIPGS-DYINANYCDGYRKHNAYVATQGPLQETL 808
N+ KNRY +++A + + +L V PG YIN N D H +VA Q P+ + +
Sbjct: 45 NRHKNRYLDILANEETIYPPVLKAVGAQPGRYPYINGNLIDLDLPHT-FVACQAPVPQGV 103
Query: 809 GDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETY-----GHITVTLQDVQELA 863
DF + E + +VM+TKL E +K ++YWP ++ GH + + E A
Sbjct: 104 PDFLETLSEKKVDLVVMLTKLREGGVLKAERYWPEEEEDSLSFPESGHDAIKVTRDAE-A 162
Query: 864 SY-------CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPG 916
SY +R ++ + Q+Q+ WPDHGVPE A F L ++
Sbjct: 163 SYEVDAELDIVRRPLVIHVPGKPMHRVLQVQYVGWPDHGVPESAASFDELLSVIK----- 217
Query: 917 TNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVD--IYGHVTCLRAQ 974
N + +S P++VHCSAG+GRTG I A + I+ D +Y V ++ +
Sbjct: 218 -NCVTTS-------PILVHCSAGIGRTGTLIGAYAALLHIERGILTDSTVYSIVAAMKQK 269
Query: 975 RNYMVQTEDQYMFIHDALL 993
R MVQ +QY I+ +L
Sbjct: 270 RFGMVQRLEQYAVIYMTVL 288
Score = 60.5 bits (145), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 87/220 (39%), Gaps = 56/220 (25%)
Query: 1294 RGKTEFKKLSNIRAEPSRFISASLPC-NKHKNRLVHILPVESSRVCLTPVRGIEGSD--- 1349
R + EF +L R E R I+ + N+HKNR + IL E + PV G+
Sbjct: 20 RMQREFVQLQ--RQENPRNINFTTSLKNRHKNRYLDILANEET--IYPPVLKAVGAQPGR 75
Query: 1350 --YINASFIDGYRLRSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMG-----R 1402
YIN + ID L ++A Q P+ DF L E +VVMLTKL+E G R
Sbjct: 76 YPYINGNLID-LDLPHTFVACQAPVPQGVPDFLETLSEKKVDLVVMLTKLREGGVLKAER 134
Query: 1403 Y--------------------VLREFKVTDARDATSRTLR----------------QFQL 1426
Y V R+ + + DA +R Q Q
Sbjct: 135 YWPEEEEDSLSFPESGHDAIKVTRDAEASYEVDAELDIVRRPLVIHVPGKPMHRVLQVQY 194
Query: 1427 IDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCS 1466
+ WP+ GVP+S F + + + PI VHCS
Sbjct: 195 VGWPDHGVPESAASFDELLSVIKNCV----TTSPILVHCS 230
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 1554 QFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVL 1613
Q Q + WP+ GVP+S F + + + PI VHCSAG+GRTG I L
Sbjct: 191 QVQYVGWPDHGVPESAASFDELLSVIKNCV----TTSPILVHCSAGIGRTGTLIGAYAAL 246
Query: 1614 ERMQYEGVID--LFQTVRILRTQRPAMVQTEHLYT 1646
++ + D ++ V ++ +R MVQ Y
Sbjct: 247 LHIERGILTDSTVYSIVAAMKQKRFGMVQRLEQYA 281
Score = 38.1 bits (87), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 683 PITVHCSAGVGRTGVFITLSIVLERMQYEGVID--LFQTVRILRTQRPAMVQ 732
PI VHCSAG+GRTG I L ++ + D ++ V ++ +R MVQ
Sbjct: 224 PILVHCSAGIGRTGTLIGAYAALLHIERGILTDSTVYSIVAAMKQKRFGMVQ 275
Score = 35.4 bits (80), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 7/36 (19%)
Query: 1711 LLFILKSSLESSGVNLPVGPLIVHCSAGVGRTGCFI 1746
LL ++K+ + +S P++VHCSAG+GRTG I
Sbjct: 212 LLSVIKNCVTTS-------PILVHCSAGIGRTGTLI 240
>pdb|1XXV|A Chain A, Yersinia Yoph (Residues 163-468) Binds
Phosphonodifluoromethyl-Phe Containing Hexapeptide At
Two Sites
pdb|1XXV|B Chain B, Yersinia Yoph (Residues 163-468) Binds
Phosphonodifluoromethyl-Phe Containing Hexapeptide At
Two Sites
Length = 306
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 86/214 (40%), Gaps = 19/214 (8%)
Query: 272 INANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEE--RTRIKCDQY 329
+NANY + +A Q PLQ L +RM+ E R+ + ++ E R Y
Sbjct: 82 LNANYIQ--VGNTRTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDY 139
Query: 330 WPSRGTETYGHITVTLQDVQELA-----SYCIRTFMINKGADSERREIKQLQFTAWPDHG 384
+ R + TYG ITV + Q++ + T I + A + + + WPD
Sbjct: 140 F--RQSGTYGSITVESKMTQQVGLGDGIMADMYTLTIRE-AGQKTISVPVVHVGNWPDQT 196
Query: 385 VPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPL----IVHCSAGVGRTGCFIVIDA 440
L + N ES G + ++HC AGVGRT I A
Sbjct: 197 AVSSEVTKALASLVDQTAETKRNMYESKGSSAVADDSKLRPVIHCRAGVGRTAQL--IGA 254
Query: 441 MIERIKHDKTVDIYGHVTCLRAQRN-YMVQTEDQ 473
M + + + V+ +R QRN MVQ ++Q
Sbjct: 255 MCMNDSRNSQLSVEDMVSQMRVQRNGIMVQKDEQ 288
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 86/214 (40%), Gaps = 19/214 (8%)
Query: 783 INANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEE--RTRIKCDQY 840
+NANY + +A Q PLQ L +RM+ E R+ + ++ E R Y
Sbjct: 82 LNANYIQ--VGNTRTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDY 139
Query: 841 WPSRGTETYGHITVTLQDVQELA-----SYCIRTFMINKGADSERREIKQLQFTAWPDHG 895
+ R + TYG ITV + Q++ + T I + A + + + WPD
Sbjct: 140 F--RQSGTYGSITVESKMTQQVGLGDGIMADMYTLTIRE-AGQKTISVPVVHVGNWPDQT 196
Query: 896 VPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPL----IVHCSAGVGRTGCFIVIDA 951
L + N ES G + ++HC AGVGRT I A
Sbjct: 197 AVSSEVTKALASLVDQTAETKRNMYESKGSSAVADDSKLRPVIHCRAGVGRTAQL--IGA 254
Query: 952 MIERIKHDKTVDIYGHVTCLRAQRN-YMVQTEDQ 984
M + + + V+ +R QRN MVQ ++Q
Sbjct: 255 MCMNDSRNSQLSVEDMVSQMRVQRNGIMVQKDEQ 288
>pdb|1PA9|A Chain A, Yersinia Protein-Tyrosine Phosphatase Complexed With Pncs
(Yop51,Pasteurella X,Ptpase,Yop51delta162) (Catalytic
Domain, Residues 163-468) Mutant With Cys 235 Replaced
By Arg (C235r)
Length = 284
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 86/214 (40%), Gaps = 19/214 (8%)
Query: 272 INANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEE--RTRIKCDQY 329
+NANY + +A Q PLQ L +RM+ E R+ + ++ E R Y
Sbjct: 60 LNANYIQ--VGNTRTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDY 117
Query: 330 WPSRGTETYGHITVTLQDVQELA-----SYCIRTFMINKGADSERREIKQLQFTAWPDHG 384
+ R + TYG ITV + Q++ + T I + A + + + WPD
Sbjct: 118 F--RQSGTYGSITVESKMTQQVGLGDGIMADMYTLTIRE-AGQKTISVPVVHVGNWPDQT 174
Query: 385 VPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPL----IVHCSAGVGRTGCFIVIDA 440
L + N ES G + ++HC AGVGRT I A
Sbjct: 175 AVSSEVTKALASLVDQTAETKRNMYESKGSSAVADDSKLRPVIHCRAGVGRTAQL--IGA 232
Query: 441 MIERIKHDKTVDIYGHVTCLRAQRN-YMVQTEDQ 473
M + + + V+ +R QRN MVQ ++Q
Sbjct: 233 MCMNDSRNSQLSVEDMVSQMRVQRNGIMVQKDEQ 266
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 86/214 (40%), Gaps = 19/214 (8%)
Query: 783 INANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEE--RTRIKCDQY 840
+NANY + +A Q PLQ L +RM+ E R+ + ++ E R Y
Sbjct: 60 LNANYIQ--VGNTRTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDY 117
Query: 841 WPSRGTETYGHITVTLQDVQELA-----SYCIRTFMINKGADSERREIKQLQFTAWPDHG 895
+ R + TYG ITV + Q++ + T I + A + + + WPD
Sbjct: 118 F--RQSGTYGSITVESKMTQQVGLGDGIMADMYTLTIRE-AGQKTISVPVVHVGNWPDQT 174
Query: 896 VPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPL----IVHCSAGVGRTGCFIVIDA 951
L + N ES G + ++HC AGVGRT I A
Sbjct: 175 AVSSEVTKALASLVDQTAETKRNMYESKGSSAVADDSKLRPVIHCRAGVGRTAQL--IGA 232
Query: 952 MIERIKHDKTVDIYGHVTCLRAQRN-YMVQTEDQ 984
M + + + V+ +R QRN MVQ ++Q
Sbjct: 233 MCMNDSRNSQLSVEDMVSQMRVQRNGIMVQKDEQ 266
>pdb|1QZ0|A Chain A, Crystal Structure Of The Yersinia Pestis Phosphatase Yoph
In Complex With A Phosphotyrosyl Mimetic-Containing
Hexapeptide
pdb|1QZ0|B Chain B, Crystal Structure Of The Yersinia Pestis Phosphatase Yoph
In Complex With A Phosphotyrosyl Mimetic-Containing
Hexapeptide
pdb|2I42|A Chain A, Crystal Structure Of Yersinia Protein Tyrosine Phosphatase
Complexed With Vanadate, A Transition State Analogue
pdb|1YTN|A Chain A, Hydrolase
pdb|1YTW|A Chain A, Yersinia Ptpase Complexed With Tungstate
pdb|2Y2F|A Chain A, Crystal Structure Of Yersinia Pestis Yoph In Complex With
An Aminooxy-Containing Platform Compound For Inhibitor
Design
pdb|2YDU|A Chain A, Crystal Structure Of Yoph In Complex With
3-(1,1-Dioxido-3-Oxoisothiazolidin-5-Yl)benzaldeyde
Length = 306
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 86/214 (40%), Gaps = 19/214 (8%)
Query: 272 INANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEE--RTRIKCDQY 329
+NANY + +A Q PLQ L +RM+ E R+ + ++ E R Y
Sbjct: 82 LNANYIQ--VGNTRTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDY 139
Query: 330 WPSRGTETYGHITVTLQDVQELA-----SYCIRTFMINKGADSERREIKQLQFTAWPDHG 384
+ R + TYG ITV + Q++ + T I + A + + + WPD
Sbjct: 140 F--RQSGTYGSITVESKMTQQVGLGDGIMADMYTLTIRE-AGQKTISVPVVHVGNWPDQT 196
Query: 385 VPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPL----IVHCSAGVGRTGCFIVIDA 440
L + N ES G + ++HC AGVGRT I A
Sbjct: 197 AVSSEVTKALASLVDQTAETKRNMYESKGSSAVADDSKLRPVIHCRAGVGRTAQL--IGA 254
Query: 441 MIERIKHDKTVDIYGHVTCLRAQRN-YMVQTEDQ 473
M + + + V+ +R QRN MVQ ++Q
Sbjct: 255 MCMNDSRNSQLSVEDMVSQMRVQRNGIMVQKDEQ 288
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 86/214 (40%), Gaps = 19/214 (8%)
Query: 783 INANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEE--RTRIKCDQY 840
+NANY + +A Q PLQ L +RM+ E R+ + ++ E R Y
Sbjct: 82 LNANYIQ--VGNTRTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDY 139
Query: 841 WPSRGTETYGHITVTLQDVQELA-----SYCIRTFMINKGADSERREIKQLQFTAWPDHG 895
+ R + TYG ITV + Q++ + T I + A + + + WPD
Sbjct: 140 F--RQSGTYGSITVESKMTQQVGLGDGIMADMYTLTIRE-AGQKTISVPVVHVGNWPDQT 196
Query: 896 VPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPL----IVHCSAGVGRTGCFIVIDA 951
L + N ES G + ++HC AGVGRT I A
Sbjct: 197 AVSSEVTKALASLVDQTAETKRNMYESKGSSAVADDSKLRPVIHCRAGVGRTAQL--IGA 254
Query: 952 MIERIKHDKTVDIYGHVTCLRAQRN-YMVQTEDQ 984
M + + + V+ +R QRN MVQ ++Q
Sbjct: 255 MCMNDSRNSQLSVEDMVSQMRVQRNGIMVQKDEQ 288
>pdb|1YPT|A Chain A, Crystal Structure Of Yersinia Protein Tyrosine Phosphatase
At 2.5 Angstroms And The Complex With Tungstate
pdb|1YPT|B Chain B, Crystal Structure Of Yersinia Protein Tyrosine Phosphatase
At 2.5 Angstroms And The Complex With Tungstate
pdb|3BLU|A Chain A, Crystal Structure Yoph Complexed With Inhibitor Pvs
pdb|3BLT|A Chain A, Crystal Structures Of Yoph Complexed With Pvsn And Pvs,
Inhibitors Of Yoph Which Co-Valent Bind To Cys Of Active
Site
Length = 305
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 86/214 (40%), Gaps = 19/214 (8%)
Query: 272 INANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEE--RTRIKCDQY 329
+NANY + +A Q PLQ L +RM+ E R+ + ++ E R Y
Sbjct: 81 LNANYIQ--VGNTRTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDY 138
Query: 330 WPSRGTETYGHITVTLQDVQELA-----SYCIRTFMINKGADSERREIKQLQFTAWPDHG 384
+ R + TYG ITV + Q++ + T I + A + + + WPD
Sbjct: 139 F--RQSGTYGSITVESKMTQQVGLGDGIMADMYTLTIRE-AGQKTISVPVVHVGNWPDQT 195
Query: 385 VPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPL----IVHCSAGVGRTGCFIVIDA 440
L + N ES G + ++HC AGVGRT I A
Sbjct: 196 AVSSEVTKALASLVDQTAETKRNMYESKGSSAVADDSKLRPVIHCRAGVGRTAQL--IGA 253
Query: 441 MIERIKHDKTVDIYGHVTCLRAQRN-YMVQTEDQ 473
M + + + V+ +R QRN MVQ ++Q
Sbjct: 254 MCMNDSRNSQLSVEDMVSQMRVQRNGIMVQKDEQ 287
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 86/214 (40%), Gaps = 19/214 (8%)
Query: 783 INANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEE--RTRIKCDQY 840
+NANY + +A Q PLQ L +RM+ E R+ + ++ E R Y
Sbjct: 81 LNANYIQ--VGNTRTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDY 138
Query: 841 WPSRGTETYGHITVTLQDVQELA-----SYCIRTFMINKGADSERREIKQLQFTAWPDHG 895
+ R + TYG ITV + Q++ + T I + A + + + WPD
Sbjct: 139 F--RQSGTYGSITVESKMTQQVGLGDGIMADMYTLTIRE-AGQKTISVPVVHVGNWPDQT 195
Query: 896 VPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPL----IVHCSAGVGRTGCFIVIDA 951
L + N ES G + ++HC AGVGRT I A
Sbjct: 196 AVSSEVTKALASLVDQTAETKRNMYESKGSSAVADDSKLRPVIHCRAGVGRTAQL--IGA 253
Query: 952 MIERIKHDKTVDIYGHVTCLRAQRN-YMVQTEDQ 984
M + + + V+ +R QRN MVQ ++Q
Sbjct: 254 MCMNDSRNSQLSVEDMVSQMRVQRNGIMVQKDEQ 287
>pdb|3U96|A Chain A, Crystal Structure Of Yophq357f(Catalytic Domain, Residues
163-468) In Complex With Pncs
pdb|3U96|B Chain B, Crystal Structure Of Yophq357f(Catalytic Domain, Residues
163-468) In Complex With Pncs
Length = 306
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 86/214 (40%), Gaps = 19/214 (8%)
Query: 272 INANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEE--RTRIKCDQY 329
+NANY + +A Q PLQ L +RM+ E R+ + ++ E R Y
Sbjct: 82 LNANYIQ--VGNTRTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDY 139
Query: 330 WPSRGTETYGHITVTLQDVQELA-----SYCIRTFMINKGADSERREIKQLQFTAWPDHG 384
+ R + TYG ITV + Q++ + T I + A + + + WPD
Sbjct: 140 F--RQSGTYGSITVESKMTQQVGLGDGIMADMYTLTIRE-AGQKTISVPVVHVGNWPDFT 196
Query: 385 VPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPL----IVHCSAGVGRTGCFIVIDA 440
L + N ES G + ++HC AGVGRT I A
Sbjct: 197 AVSSEVTKALASLVDQTAETKRNMYESKGSSAVADDSKLRPVIHCRAGVGRTAQL--IGA 254
Query: 441 MIERIKHDKTVDIYGHVTCLRAQRN-YMVQTEDQ 473
M + + + V+ +R QRN MVQ ++Q
Sbjct: 255 MCMNDSRNSQLSVEDMVSQMRVQRNGIMVQKDEQ 288
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 86/214 (40%), Gaps = 19/214 (8%)
Query: 783 INANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEE--RTRIKCDQY 840
+NANY + +A Q PLQ L +RM+ E R+ + ++ E R Y
Sbjct: 82 LNANYIQ--VGNTRTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDY 139
Query: 841 WPSRGTETYGHITVTLQDVQELA-----SYCIRTFMINKGADSERREIKQLQFTAWPDHG 895
+ R + TYG ITV + Q++ + T I + A + + + WPD
Sbjct: 140 F--RQSGTYGSITVESKMTQQVGLGDGIMADMYTLTIRE-AGQKTISVPVVHVGNWPDFT 196
Query: 896 VPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPL----IVHCSAGVGRTGCFIVIDA 951
L + N ES G + ++HC AGVGRT I A
Sbjct: 197 AVSSEVTKALASLVDQTAETKRNMYESKGSSAVADDSKLRPVIHCRAGVGRTAQL--IGA 254
Query: 952 MIERIKHDKTVDIYGHVTCLRAQRN-YMVQTEDQ 984
M + + + V+ +R QRN MVQ ++Q
Sbjct: 255 MCMNDSRNSQLSVEDMVSQMRVQRNGIMVQKDEQ 288
>pdb|1V3A|A Chain A, Structure Of Human Prl-3, The Phosphatase Associated With
Cancer Metastasis
Length = 173
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 1557 LIDWP-EQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLER 1615
++DWP + G P G D++ V K K + VHC AG+GR V + L+++
Sbjct: 65 VVDWPFDDGAPPPGKVVEDWLSLV-KAKFCEAPGSCVAVHCVAGLGRAPVLVALALIESG 123
Query: 1616 MQYEGVIDLFQTVR 1629
M+YE I + R
Sbjct: 124 MKYEDAIQFIRQKR 137
Score = 37.7 bits (86), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 684 ITVHCSAGVGRTGVFITLSIVLERMQYEGVIDLFQTVRILRTQRPAMVQTESIEPGQQF 742
+ VHC AG+GR V + L+++ M+YE I + R + E P Q+
Sbjct: 100 VAVHCVAGLGRAPVLVALALIESGMKYEDAIQFIRQKRRGAINSKQLTYLEKYRPKQRL 158
>pdb|1R6H|A Chain A, Solution Structure Of Human Prl-3
Length = 172
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 1557 LIDWP-EQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLER 1615
++DWP + G P G D++ V K K + VHC AG+GR V + L+++
Sbjct: 68 VVDWPFDDGAPPPGKVVEDWLSLV-KAKFCEAPGSCVAVHCVAGLGRAPVLVALALIESG 126
Query: 1616 MQYEGVIDLFQTVR 1629
M+YE I + R
Sbjct: 127 MKYEDAIQFIRQKR 140
Score = 38.1 bits (87), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 28/61 (45%)
Query: 684 ITVHCSAGVGRTGVFITLSIVLERMQYEGVIDLFQTVRILRTQRPAMVQTESIEPGQQFT 743
+ VHC AG+GR V + L+++ M+YE I + R + E P Q+
Sbjct: 103 VAVHCVAGLGRAPVLVALALIESGMKYEDAIQFIRQKRRGAINSKQLTYLEKYRPKQRLR 162
Query: 744 W 744
+
Sbjct: 163 F 163
>pdb|3BM8|A Chain A, Crystal Structure Of Yoph Mutant D356a Complexed With
Irreversible Inhibitor Pvsn
Length = 305
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 85/214 (39%), Gaps = 19/214 (8%)
Query: 272 INANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEE--RTRIKCDQY 329
+NANY + +A Q PLQ L +RM+ E R+ + ++ E R Y
Sbjct: 81 LNANYIQ--VGNTRTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDY 138
Query: 330 WPSRGTETYGHITVTLQDVQELA-----SYCIRTFMINKGADSERREIKQLQFTAWPDHG 384
+ R + TYG ITV + Q++ + T I + A + + + WP
Sbjct: 139 F--RQSGTYGSITVESKMTQQVGLGDGIMADMYTLTIRE-AGQKTISVPVVHVGNWPAQT 195
Query: 385 VPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPL----IVHCSAGVGRTGCFIVIDA 440
L + N ES G + ++HC AGVGRT I A
Sbjct: 196 AVSSEVTKALASLVDQTAETKRNMYESKGSSAVADDSKLRPVIHCRAGVGRTAQL--IGA 253
Query: 441 MIERIKHDKTVDIYGHVTCLRAQRN-YMVQTEDQ 473
M + + + V+ +R QRN MVQ ++Q
Sbjct: 254 MCMNDSRNSQLSVEDMVSQMRVQRNGIMVQKDEQ 287
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 85/214 (39%), Gaps = 19/214 (8%)
Query: 783 INANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEE--RTRIKCDQY 840
+NANY + +A Q PLQ L +RM+ E R+ + ++ E R Y
Sbjct: 81 LNANYIQ--VGNTRTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDY 138
Query: 841 WPSRGTETYGHITVTLQDVQELA-----SYCIRTFMINKGADSERREIKQLQFTAWPDHG 895
+ R + TYG ITV + Q++ + T I + A + + + WP
Sbjct: 139 F--RQSGTYGSITVESKMTQQVGLGDGIMADMYTLTIRE-AGQKTISVPVVHVGNWPAQT 195
Query: 896 VPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPL----IVHCSAGVGRTGCFIVIDA 951
L + N ES G + ++HC AGVGRT I A
Sbjct: 196 AVSSEVTKALASLVDQTAETKRNMYESKGSSAVADDSKLRPVIHCRAGVGRTAQL--IGA 253
Query: 952 MIERIKHDKTVDIYGHVTCLRAQRN-YMVQTEDQ 984
M + + + V+ +R QRN MVQ ++Q
Sbjct: 254 MCMNDSRNSQLSVEDMVSQMRVQRNGIMVQKDEQ 287
>pdb|3RZ2|A Chain A, Crystal Of Prl-1 Complexed With Peptide
pdb|3RZ2|B Chain B, Crystal Of Prl-1 Complexed With Peptide
Length = 189
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 10/117 (8%)
Query: 1546 DATSRTLRQFQLIDWP-EQGVPKSGDGFIDFIGQVH-KTKEQFGQDGPITVHCSAGVGRT 1603
D T ++DWP + G P S D++ V K +E+ G I VHC AG+GR
Sbjct: 74 DTTLVEKEGIHVLDWPFDDGAPPSNQIVDDWLSLVKIKFREEPG--CCIAVHCVAGLGRA 131
Query: 1604 GVFITLSIVLERMQYEGVIDLFQTVRILRTQRPAMVQTEHLYTSSPFSEQLALDMRE 1660
V + L+++ M+YE V+ +R +R ++ L + ++ L ++
Sbjct: 132 PVLVALALIEGGMKYE------DAVQFIRQKRRGAFNSKQLLYLEKYRPKMRLRFKD 182
Score = 38.9 bits (89), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 41/97 (42%)
Query: 656 DGIPGRDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVID 715
DG P + +D + K K + I VHC AG+GR V + L+++ M+YE +
Sbjct: 92 DGAPPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALIEGGMKYEDAVQ 151
Query: 716 LFQTVRILRTQRPAMVQTESIEPGQQFTWDHSSMEMN 752
+ R ++ E P + + S+ N
Sbjct: 152 FIRQKRRGAFNSKQLLYLEKYRPKMRLRFKDSNGHRN 188
>pdb|3F99|A Chain A, W354f Yersinia Enterocolitica Ptpase Apo Form
pdb|3F9A|A Chain A, W354f Yersinia Enterocolitica Ptpase Complexed With
Tungstate
pdb|3F9B|A Chain A, W354f Yersinia Enterocolitica Ptpase Complexed With
Divanadate
Length = 306
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 86/214 (40%), Gaps = 19/214 (8%)
Query: 272 INANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEE--RTRIKCDQY 329
+NANY + +A Q PLQ L +RM+ E R+ + ++ E R Y
Sbjct: 82 LNANYIQ--VGNTRTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDY 139
Query: 330 WPSRGTETYGHITVTLQDVQELA-----SYCIRTFMINKGADSERREIKQLQFTAWPDHG 384
+ R + TYG ITV + Q++ + T I + A + + + +PD
Sbjct: 140 F--RQSGTYGSITVESKMTQQVGLGDGIMADMYTLTIRE-AGQKTISVPVVHVGNFPDQT 196
Query: 385 VPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPL----IVHCSAGVGRTGCFIVIDA 440
L + N ES G + ++HC AGVGRT I A
Sbjct: 197 AVSSEVTKALASLVDQTAETKRNMYESKGSSAVADDSKLRPVIHCRAGVGRTAQL--IGA 254
Query: 441 MIERIKHDKTVDIYGHVTCLRAQRN-YMVQTEDQ 473
M + + + V+ +R QRN MVQ ++Q
Sbjct: 255 MCMNDSRNSQLSVEDMVSQMRVQRNGIMVQKDEQ 288
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 86/214 (40%), Gaps = 19/214 (8%)
Query: 783 INANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEE--RTRIKCDQY 840
+NANY + +A Q PLQ L +RM+ E R+ + ++ E R Y
Sbjct: 82 LNANYIQ--VGNTRTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDY 139
Query: 841 WPSRGTETYGHITVTLQDVQELA-----SYCIRTFMINKGADSERREIKQLQFTAWPDHG 895
+ R + TYG ITV + Q++ + T I + A + + + +PD
Sbjct: 140 F--RQSGTYGSITVESKMTQQVGLGDGIMADMYTLTIRE-AGQKTISVPVVHVGNFPDQT 196
Query: 896 VPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPL----IVHCSAGVGRTGCFIVIDA 951
L + N ES G + ++HC AGVGRT I A
Sbjct: 197 AVSSEVTKALASLVDQTAETKRNMYESKGSSAVADDSKLRPVIHCRAGVGRTAQL--IGA 254
Query: 952 MIERIKHDKTVDIYGHVTCLRAQRN-YMVQTEDQ 984
M + + + V+ +R QRN MVQ ++Q
Sbjct: 255 MCMNDSRNSQLSVEDMVSQMRVQRNGIMVQKDEQ 288
>pdb|1XXP|A Chain A, Yersinia Yoph (Residues 163-468) C403s Binds
Phosphotyrosyl Peptide At Two Sites
pdb|1XXP|B Chain B, Yersinia Yoph (Residues 163-468) C403s Binds
Phosphotyrosyl Peptide At Two Sites
Length = 306
Score = 43.9 bits (102), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 85/214 (39%), Gaps = 19/214 (8%)
Query: 272 INANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEE--RTRIKCDQY 329
+NANY + +A Q PLQ L +RM+ E R+ + ++ E R Y
Sbjct: 82 LNANYIQ--VGNTRTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDY 139
Query: 330 WPSRGTETYGHITVTLQDVQELA-----SYCIRTFMINKGADSERREIKQLQFTAWPDHG 384
+ R + TYG ITV + Q++ + T I + A + + + WPD
Sbjct: 140 F--RQSGTYGSITVESKMTQQVGLGDGIMADMYTLTIRE-AGQKTISVPVVHVGNWPDQT 196
Query: 385 VPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPL----IVHCSAGVGRTGCFIVIDA 440
L + N ES G + ++H AGVGRT I A
Sbjct: 197 AVSSEVTKALASLVDQTAETKRNMYESKGSSAVADDSKLRPVIHSRAGVGRTAQL--IGA 254
Query: 441 MIERIKHDKTVDIYGHVTCLRAQRN-YMVQTEDQ 473
M + + + V+ +R QRN MVQ ++Q
Sbjct: 255 MCMNDSRNSQLSVEDMVSQMRVQRNGIMVQKDEQ 288
Score = 43.9 bits (102), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 85/214 (39%), Gaps = 19/214 (8%)
Query: 783 INANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEE--RTRIKCDQY 840
+NANY + +A Q PLQ L +RM+ E R+ + ++ E R Y
Sbjct: 82 LNANYIQ--VGNTRTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDY 139
Query: 841 WPSRGTETYGHITVTLQDVQELA-----SYCIRTFMINKGADSERREIKQLQFTAWPDHG 895
+ R + TYG ITV + Q++ + T I + A + + + WPD
Sbjct: 140 F--RQSGTYGSITVESKMTQQVGLGDGIMADMYTLTIRE-AGQKTISVPVVHVGNWPDQT 196
Query: 896 VPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPL----IVHCSAGVGRTGCFIVIDA 951
L + N ES G + ++H AGVGRT I A
Sbjct: 197 AVSSEVTKALASLVDQTAETKRNMYESKGSSAVADDSKLRPVIHSRAGVGRTAQL--IGA 254
Query: 952 MIERIKHDKTVDIYGHVTCLRAQRN-YMVQTEDQ 984
M + + + V+ +R QRN MVQ ++Q
Sbjct: 255 MCMNDSRNSQLSVEDMVSQMRVQRNGIMVQKDEQ 288
>pdb|1LYV|A Chain A, High-Resolution Structure Of The Catalytically Inactive
Yersinia Tyrosine Phosphatase C403a Mutant In Complex
With Phosphate
Length = 306
Score = 43.9 bits (102), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 85/214 (39%), Gaps = 19/214 (8%)
Query: 272 INANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEE--RTRIKCDQY 329
+NANY + +A Q PLQ L +RM+ E R+ + ++ E R Y
Sbjct: 82 LNANYIQ--VGNTRTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDY 139
Query: 330 WPSRGTETYGHITVTLQDVQELA-----SYCIRTFMINKGADSERREIKQLQFTAWPDHG 384
+ R + TYG ITV + Q++ + T I + A + + + WPD
Sbjct: 140 F--RQSGTYGSITVESKMTQQVGLGDGIMADMYTLTIRE-AGQKTISVPVVHVGNWPDQT 196
Query: 385 VPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPL----IVHCSAGVGRTGCFIVIDA 440
L + N ES G + ++H AGVGRT I A
Sbjct: 197 AVSSEVTKALASLVDQTAETKRNMYESKGSSAVADDSKLRPVIHSRAGVGRTAQL--IGA 254
Query: 441 MIERIKHDKTVDIYGHVTCLRAQRN-YMVQTEDQ 473
M + + + V+ +R QRN MVQ ++Q
Sbjct: 255 MCMNDSRNSQLSVEDMVSQMRVQRNGIMVQKDEQ 288
Score = 43.9 bits (102), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 85/214 (39%), Gaps = 19/214 (8%)
Query: 783 INANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEE--RTRIKCDQY 840
+NANY + +A Q PLQ L +RM+ E R+ + ++ E R Y
Sbjct: 82 LNANYIQ--VGNTRTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDY 139
Query: 841 WPSRGTETYGHITVTLQDVQELA-----SYCIRTFMINKGADSERREIKQLQFTAWPDHG 895
+ R + TYG ITV + Q++ + T I + A + + + WPD
Sbjct: 140 F--RQSGTYGSITVESKMTQQVGLGDGIMADMYTLTIRE-AGQKTISVPVVHVGNWPDQT 196
Query: 896 VPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPL----IVHCSAGVGRTGCFIVIDA 951
L + N ES G + ++H AGVGRT I A
Sbjct: 197 AVSSEVTKALASLVDQTAETKRNMYESKGSSAVADDSKLRPVIHSRAGVGRTAQL--IGA 254
Query: 952 MIERIKHDKTVDIYGHVTCLRAQRN-YMVQTEDQ 984
M + + + V+ +R QRN MVQ ++Q
Sbjct: 255 MCMNDSRNSQLSVEDMVSQMRVQRNGIMVQKDEQ 288
>pdb|1YTS|A Chain A, A Ligand-Induced Conformational Change In The Yersinia
Protein Tyrosine Phosphatase
Length = 278
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 84/214 (39%), Gaps = 19/214 (8%)
Query: 272 INANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEE--RTRIKCDQY 329
+NANY + +A Q PLQ L +RM+ E R+ + ++ E R Y
Sbjct: 54 LNANYIQ--VGNTRTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDY 111
Query: 330 WPSRGTETYGHITVTLQDVQELA-----SYCIRTFMINKGADSERREIKQLQFTAWPDHG 384
+ G TYG ITV + Q++ + T I + A + + + WPD
Sbjct: 112 FRQSG--TYGSITVESKMTQQVGLGDGIMADMYTLTIRE-AGQKTISVPVVHVGNWPDQT 168
Query: 385 VPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPL----IVHCSAGVGRTGCFIVIDA 440
L + N ES G + ++H AGVGRT I A
Sbjct: 169 AVSSEVTKALASLVDQTAETKRNMYESKGSSAVADDSKLRPVIHSRAGVGRTAQL--IGA 226
Query: 441 MIERIKHDKTVDIYGHVTCLRAQRN-YMVQTEDQ 473
M + + + V+ +R QRN MVQ ++Q
Sbjct: 227 MCMNDSRNSQLSVEDMVSQMRVQRNGIMVQKDEQ 260
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 84/214 (39%), Gaps = 19/214 (8%)
Query: 783 INANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEE--RTRIKCDQY 840
+NANY + +A Q PLQ L +RM+ E R+ + ++ E R Y
Sbjct: 54 LNANYIQ--VGNTRTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDY 111
Query: 841 WPSRGTETYGHITVTLQDVQELA-----SYCIRTFMINKGADSERREIKQLQFTAWPDHG 895
+ G TYG ITV + Q++ + T I + A + + + WPD
Sbjct: 112 FRQSG--TYGSITVESKMTQQVGLGDGIMADMYTLTIRE-AGQKTISVPVVHVGNWPDQT 168
Query: 896 VPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPL----IVHCSAGVGRTGCFIVIDA 951
L + N ES G + ++H AGVGRT I A
Sbjct: 169 AVSSEVTKALASLVDQTAETKRNMYESKGSSAVADDSKLRPVIHSRAGVGRTAQL--IGA 226
Query: 952 MIERIKHDKTVDIYGHVTCLRAQRN-YMVQTEDQ 984
M + + + V+ +R QRN MVQ ++Q
Sbjct: 227 MCMNDSRNSQLSVEDMVSQMRVQRNGIMVQKDEQ 260
>pdb|1G4U|S Chain S, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
pdb|1G4W|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp
Length = 383
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 70/297 (23%), Positives = 115/297 (38%), Gaps = 34/297 (11%)
Query: 200 ISRLAQHIENLKANDNLKFSQEYESIEPGQQFTWDHSSMEMNKAKNRYANVIAYDHSRVI 259
I +A+ ++N+ A E E IE G S + A+ +++ ++V
Sbjct: 113 IHVIAKELKNVTA--------ELEKIEAGAPMPQTMSGPTLGLARFAVSSIPINQQTQVK 164
Query: 260 LSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGD----FWRMVWELRSVTIVMM 315
LS DG+P +N DG VA G + D +M+ E +V++
Sbjct: 165 LS--DGMPVP--VNTLTFDG-----KPVALAGSYPKNTPDALEAHMKMLLEKECSCLVVL 215
Query: 316 TKLEERTRIKCDQYWPSRGTETYGHITVTLQDVQELA-SYCIRTFMINKGADSERREIKQ 374
T ++ + Y+ RG+ T+G + Q V + I + + +R I
Sbjct: 216 TSEDQMQAKQLPPYF--RGSYTFGEVHTNSQKVSSASQGEAIDQYNMQLSCGEKRYTIPV 273
Query: 375 LQFTAWPDHGVPEHPAPFLLFLRRVRAMNP-GTNSLESSGVNLPVGPLIVHCSAGVGRTG 433
L WPDH RV+ N G SS +LP ++HC GVGRTG
Sbjct: 274 LHVKNWPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLP----MIHCLGGVGRTG 329
Query: 434 CFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLEAVLCGNT 490
A++ +K + ++ R RN + ED F+ ++A L T
Sbjct: 330 TMAA--ALV--LKDNPHSNLEQVRADFRDSRNNRM-LEDASQFVQLKAMQAQLLMTT 381
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 78/198 (39%), Gaps = 13/198 (6%)
Query: 806 ETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDVQELA-S 864
+ L +M+ E +V++T ++ + Y+ RG+ T+G + Q V +
Sbjct: 195 DALEAHMKMLLEKECSCLVVLTSEDQMQAKQLPPYF--RGSYTFGEVHTNSQKVSSASQG 252
Query: 865 YCIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNP-GTNSLESS 923
I + + +R I L WPDH RV+ N G SS
Sbjct: 253 EAIDQYNMQLSCGEKRYTIPVLHVKNWPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSS 312
Query: 924 GVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTED 983
+LP ++HC GVGRTG A++ +K + ++ R RN + ED
Sbjct: 313 DKHLP----MIHCLGGVGRTGTMAA--ALV--LKDNPHSNLEQVRADFRDSRNNRM-LED 363
Query: 984 QYMFIHDALLEAVLCGNT 1001
F+ ++A L T
Sbjct: 364 ASQFVQLKAMQAQLLMTT 381
>pdb|1X24|A Chain A, Prl-1 (Ptp4a)
pdb|1X24|B Chain B, Prl-1 (Ptp4a)
Length = 180
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 10/113 (8%)
Query: 1546 DATSRTLRQFQLIDWP-EQGVPKSGDGFIDFIGQVH-KTKEQFGQDGPITVHCSAGVGRT 1603
D T ++DWP + G P S D++ V K +E+ G I VHC AG+GR
Sbjct: 74 DTTLVEKEGIHVLDWPFDDGAPPSNQIVDDWLSLVKIKFREEPG--CCIAVHCVAGLGRA 131
Query: 1604 GVFITLSIVLERMQYEGVIDLFQTVRILRTQRPAMVQTEHLYTSSPFSEQLAL 1656
V + L+++ M+YE V+ +R +R ++ L + ++ L
Sbjct: 132 PVLVALALIEGGMKYE------DAVQFIRQKRRGAFNSKQLLYLEKYRPKMRL 178
Score = 37.4 bits (85), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%)
Query: 656 DGIPGRDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVID 715
DG P + +D + K K + I VHC AG+GR V + L+++ M+YE +
Sbjct: 92 DGAPPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALIEGGMKYEDAVQ 151
Query: 716 LFQTVR 721
+ R
Sbjct: 152 FIRQKR 157
>pdb|1ZCK|A Chain A, Native Structure Prl-1 (Ptp4a1)
pdb|1ZCK|B Chain B, Native Structure Prl-1 (Ptp4a1)
pdb|1ZCK|C Chain C, Native Structure Prl-1 (Ptp4a1)
Length = 154
Score = 38.9 bits (89), Expect = 0.023, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 1556 QLIDWP-EQGVPKSGDGFIDFIGQVH-KTKEQFGQDGPITVHCSAGVGRTGVFITLSIVL 1613
++DWP + G P S D++ V K +E+ G I VHC AG+GR V + L+++
Sbjct: 58 HVLDWPFDDGAPPSNQIVDDWLSLVKIKFREEPG--CCIAVHCVAGLGRAPVLVALALIE 115
Query: 1614 ERMQYEGVIDLFQTVR 1629
+YE + + R
Sbjct: 116 GGXKYEDAVQFIRQKR 131
Score = 33.1 bits (74), Expect = 1.3, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 31/66 (46%)
Query: 656 DGIPGRDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVID 715
DG P + +D + K K + I VHC AG+GR V + L+++ +YE +
Sbjct: 66 DGAPPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALIEGGXKYEDAVQ 125
Query: 716 LFQTVR 721
+ R
Sbjct: 126 FIRQKR 131
>pdb|1RXD|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase 4a1
pdb|1RXD|B Chain B, Crystal Structure Of Human Protein Tyrosine Phosphatase 4a1
pdb|1RXD|C Chain C, Crystal Structure Of Human Protein Tyrosine Phosphatase 4a1
Length = 159
Score = 38.9 bits (89), Expect = 0.023, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 1556 QLIDWP-EQGVPKSGDGFIDFIGQVH-KTKEQFGQDGPITVHCSAGVGRTGVFITLSIVL 1613
++DWP + G P S D++ V K +E+ G I VHC AG+GR V + L+++
Sbjct: 63 HVLDWPFDDGAPPSNQIVDDWLSLVKIKFREEPG--CCIAVHCVAGLGRAPVLVALALIE 120
Query: 1614 ERMQYEGVIDLFQTVR 1629
+YE + + R
Sbjct: 121 GGXKYEDAVQFIRQKR 136
Score = 33.1 bits (74), Expect = 1.3, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 31/66 (46%)
Query: 656 DGIPGRDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVID 715
DG P + +D + K K + I VHC AG+GR V + L+++ +YE +
Sbjct: 71 DGAPPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALIEGGXKYEDAVQ 130
Query: 716 LFQTVR 721
+ R
Sbjct: 131 FIRQKR 136
>pdb|1ZCL|A Chain A, Prl-1 C104s Mutant In Complex With Sulfate
pdb|1ZCL|B Chain B, Prl-1 C104s Mutant In Complex With Sulfate
Length = 180
Score = 38.9 bits (89), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 10/113 (8%)
Query: 1546 DATSRTLRQFQLIDWP-EQGVPKSGDGFIDFIGQVH-KTKEQFGQDGPITVHCSAGVGRT 1603
D T ++DWP + G P S D++ V K +E+ G I VH AG+GR
Sbjct: 74 DTTLVEKEGIHVLDWPFDDGAPPSNQIVDDWLSLVKIKFREEPG--CCIAVHSVAGLGRA 131
Query: 1604 GVFITLSIVLERMQYEGVIDLFQTVRILRTQRPAMVQTEHLYTSSPFSEQLAL 1656
V + L+++ M+YE V+ +R +R ++ L + ++ L
Sbjct: 132 PVLVALALIEGGMKYE------DAVQFIRQKRRGAFNSKQLLYLEKYRPKMRL 178
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%)
Query: 656 DGIPGRDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVID 715
DG P + +D + K K + I VH AG+GR V + L+++ M+YE +
Sbjct: 92 DGAPPSNQIVDDWLSLVKIKFREEPGCCIAVHSVAGLGRAPVLVALALIEGGMKYEDAVQ 151
Query: 716 LFQTVR 721
+ R
Sbjct: 152 FIRQKR 157
>pdb|1OHC|A Chain A, Structure Of The Proline Directed Phosphatase Cdc14
pdb|1OHD|A Chain A, Structure Of Cdc14 In Complex With Tungstate
Length = 348
Score = 37.7 bits (86), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 11/63 (17%)
Query: 681 DGPITVHCSAGVGRTGVFITLSIVLE-RMQYEGVIDLFQTVRILRTQRPAMVQTESIEPG 739
+G I VHC AG+GRTG I I+ RM +T+ +R RP V I P
Sbjct: 269 EGAIAVHCKAGLGRTGTLIACYIMKHYRMTAA------ETIAWVRICRPGSV----IGPQ 318
Query: 740 QQF 742
QQF
Sbjct: 319 QQF 321
Score = 34.3 bits (77), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
Query: 1589 DGPITVHCSAGVGRTGVFITLSIVLE-RMQYEGVIDLFQTVRILRTQRPAMV 1639
+G I VHC AG+GRTG I I+ RM +T+ +R RP V
Sbjct: 269 EGAIAVHCKAGLGRTGTLIACYIMKHYRMTAA------ETIAWVRICRPGSV 314
>pdb|2I6I|A Chain A, Crystal Structures Of The Archaeal Sulfolobus Ptp-Fold
Phosphatase
pdb|2I6J|A Chain A, Crystal Structure Of The Complex Of The Archaeal
Sulfolobus Ptp-Fold Phosphatase With Phosphate Ion
pdb|2I6M|A Chain A, Crystal Structure Of The Complexes Of The Archaeal
Sulfolobus Ptp-Fold Phosphatase With Tungstate
pdb|3RO1|A Chain A, Crystal Structure Of The Complex Of The Archaeal
Sulfolobus Ptp-Fold Phosphatase With Terpyridine
Platinum(Ii)
Length = 161
Score = 37.0 bits (84), Expect = 0.10, Method: Composition-based stats.
Identities = 33/105 (31%), Positives = 48/105 (45%), Gaps = 16/105 (15%)
Query: 657 GIPGRDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVL-ERMQYEGVID 715
G+P F+ + + KE G + VHC G+GRTG + ++L E ++ E ID
Sbjct: 71 GVPSDSQFLTIMKWLLSEKE-----GNL-VHCVGGIGRTGTILASYLILTEGLEVESAID 124
Query: 716 LFQTVRILRTQRPAMVQTESIEPGQQFTWDHSSMEMNKAKNRYAN 760
VR++ RP VQT E F M + KN Y+N
Sbjct: 125 ---EVRLV---RPGAVQTYEQE---MFLLRVEGMRKSWLKNIYSN 160
Score = 35.4 bits (80), Expect = 0.29, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 14/82 (17%)
Query: 1561 PEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVL-ERMQYE 1619
P+ GVP S F+ + + KE G + VHC G+GRTG + ++L E ++ E
Sbjct: 68 PDGGVP-SDSQFLTIMKWLLSEKE-----GNL-VHCVGGIGRTGTILASYLILTEGLEVE 120
Query: 1620 GVIDLFQTVRILRTQRPAMVQT 1641
ID VR++ RP VQT
Sbjct: 121 SAID---EVRLV---RPGAVQT 136
>pdb|1XM2|A Chain A, Crystal Structure Of Human Prl-1
pdb|1XM2|B Chain B, Crystal Structure Of Human Prl-1
pdb|1XM2|C Chain C, Crystal Structure Of Human Prl-1
pdb|1XM2|D Chain D, Crystal Structure Of Human Prl-1
pdb|1XM2|E Chain E, Crystal Structure Of Human Prl-1
pdb|1XM2|F Chain F, Crystal Structure Of Human Prl-1
Length = 173
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 10/107 (9%)
Query: 1556 QLIDWP-EQGVPKSGDGFIDFIGQVH-KTKEQFGQDGPITVHCSAGVGRTGVFITLSIVL 1613
++DWP + G P S D++ V K +E+ G I VH AG+GR V + L+++
Sbjct: 64 HVLDWPFDDGAPPSNQIVDDWLSLVKIKFREEPG--CCIAVHSVAGLGRAPVLVALALIE 121
Query: 1614 ERMQYEGVIDLFQTVRILRTQRPAMVQTEHLYTSSPFSEQLALDMRE 1660
+YE V+ +R +R ++ L + + L ++
Sbjct: 122 GGXKYE------DAVQFIRQKRRGAFNSKQLLYLEKYRPKXRLRFKD 162
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 39/97 (40%)
Query: 656 DGIPGRDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVID 715
DG P + +D + K K + I VH AG+GR V + L+++ +YE +
Sbjct: 72 DGAPPSNQIVDDWLSLVKIKFREEPGCCIAVHSVAGLGRAPVLVALALIEGGXKYEDAVQ 131
Query: 716 LFQTVRILRTQRPAMVQTESIEPGQQFTWDHSSMEMN 752
+ R ++ E P + + S+ N
Sbjct: 132 FIRQKRRGAFNSKQLLYLEKYRPKXRLRFKDSNGHRN 168
>pdb|2PSZ|A Chain A, Structure Of The Ptp-like Phytase Expressed By Selenomonas
Ruminantium At Low Ionic Strength
pdb|2PSZ|B Chain B, Structure Of The Ptp-like Phytase Expressed By Selenomonas
Ruminantium At Low Ionic Strength
pdb|3D1H|A Chain A, Structure Of The Ptp-Like Phytase Expressed By Selenomonas
Ruminantium At An Ionic Strength Of 500 Mm
pdb|3D1H|B Chain B, Structure Of The Ptp-Like Phytase Expressed By Selenomonas
Ruminantium At An Ionic Strength Of 500 Mm
pdb|3D1O|A Chain A, Structure Of The Ptp-Like Phytase Expressed By Selenomonas
Ruminantium At An Ionic Strength Of 300 Mm
pdb|3D1O|B Chain B, Structure Of The Ptp-Like Phytase Expressed By Selenomonas
Ruminantium At An Ionic Strength Of 300 Mm
pdb|3D1Q|A Chain A, Structure Of The Ptp-Like Phytase Expressed By Selenomonas
Ruminantium At An Ionic Strength Of 400 Mm
pdb|3D1Q|B Chain B, Structure Of The Ptp-Like Phytase Expressed By Selenomonas
Ruminantium At An Ionic Strength Of 400 Mm
Length = 340
Score = 36.2 bits (82), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 1523 VEPIAEYNMPQ--YVLREFKV-TDARDATSRTLRQFQLID----WPEQGVPKSGDGFIDF 1575
+ P+ ++ +P+ V R KV T+ A + +R F++ WP P++ D F+ F
Sbjct: 176 IAPLGKHKLPEGGEVRRVQKVQTEQEVAEAAGMRYFRIAATDHVWP---TPENIDRFLAF 232
Query: 1576 IGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLE 1614
QD + HC AGVGRT F+ ++ +L+
Sbjct: 233 Y-------RTLPQDAWLHFHCEAGVGRTTAFMVMTDMLK 264
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 13/72 (18%)
Query: 635 AKNRYANVIAYDHSRVILSTVDGIPGRDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGR 694
A RY + A DH + T + I D F+ F QD + HC AGVGR
Sbjct: 206 AGMRYFRIAATDH---VWPTPENI---DRFLAFY-------RTLPQDAWLHFHCEAGVGR 252
Query: 695 TGVFITLSIVLE 706
T F+ ++ +L+
Sbjct: 253 TTAFMVMTDMLK 264
>pdb|2B4P|A Chain A, Structure Of The D223n Mutant Of Selenomonas Ruminantium
Ptp-Like Phytase
pdb|2B4P|B Chain B, Structure Of The D223n Mutant Of Selenomonas Ruminantium
Ptp-Like Phytase
Length = 334
Score = 36.2 bits (82), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 1523 VEPIAEYNMPQ--YVLREFKV-TDARDATSRTLRQFQLID----WPEQGVPKSGDGFIDF 1575
+ P+ ++ +P+ V R KV T+ A + +R F++ WP P++ D F+ F
Sbjct: 170 IAPLGKHKLPEGGEVRRVQKVQTEQEVAEAAGMRYFRIAATNHVWP---TPENIDRFLAF 226
Query: 1576 IGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLE 1614
QD + HC AGVGRT F+ ++ +L+
Sbjct: 227 Y-------RTLPQDAWLHFHCEAGVGRTTAFMVMTDMLK 258
>pdb|1U26|A Chain A, Crystal Structure Of Selenomonas Ruminantium Phytase
Complexed With Persulfated Phytate
pdb|1U26|B Chain B, Crystal Structure Of Selenomonas Ruminantium Phytase
Complexed With Persulfated Phytate
Length = 337
Score = 36.2 bits (82), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 1523 VEPIAEYNMPQ--YVLREFKV-TDARDATSRTLRQFQLID----WPEQGVPKSGDGFIDF 1575
+ P+ ++ +P+ V R KV T+ A + +R F++ WP P++ D F+ F
Sbjct: 171 IAPLGKHKLPEGGEVRRVQKVQTEQEVAEAAGMRYFRIAATDHVWP---TPENIDRFLAF 227
Query: 1576 IGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLE 1614
QD + HC AGVGRT F+ ++ +L+
Sbjct: 228 Y-------RTLPQDAWLHFHCEAGVGRTTAFMVMTDMLK 259
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 13/72 (18%)
Query: 635 AKNRYANVIAYDHSRVILSTVDGIPGRDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGR 694
A RY + A DH + T + I D F+ F QD + HC AGVGR
Sbjct: 201 AGMRYFRIAATDH---VWPTPENI---DRFLAFY-------RTLPQDAWLHFHCEAGVGR 247
Query: 695 TGVFITLSIVLE 706
T F+ ++ +L+
Sbjct: 248 TTAFMVMTDMLK 259
>pdb|3S4O|A Chain A, Protein Tyrosine Phosphatase (Putative) From Leishmania
Major
pdb|3S4O|B Chain B, Protein Tyrosine Phosphatase (Putative) From Leishmania
Major
Length = 167
Score = 35.8 bits (81), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 63/144 (43%), Gaps = 23/144 (15%)
Query: 1516 IRYEWFVVEPIAEYNMPQYVLREFKVTDAR----------DATSRTLRQFQLIDWP-EQG 1564
+ + + +++ + N+P Y+ +E + R DAT R + WP + G
Sbjct: 21 VLFHFLILDAPSPSNLPTYI-KELQHRGVRHLVRVCGPTYDATLVKSRGIDVHSWPFDDG 79
Query: 1565 VPKSGDGFIDFIGQVHKTKEQFGQDGP------ITVHCSAGVGRTGVFITLSIVLERMQY 1618
P + +D ++ T+ Q+ P I VHC AG+GR + + L++V +Y
Sbjct: 80 APPT-RAVLDSWLKLLDTELARQQEDPSVPPPTIGVHCVAGLGRAPILVALALV----EY 134
Query: 1619 EGVIDLFQTVRILRTQRPAMVQTE 1642
V L I ++ A+ QT+
Sbjct: 135 GNVSALDAIALIREKRKGAINQTQ 158
>pdb|2B4O|A Chain A, Structure Of The R258k Mutant Of Selenomonas Ruminantium
Ptp-Like Phytase
pdb|2B4O|B Chain B, Structure Of The R258k Mutant Of Selenomonas Ruminantium
Ptp-Like Phytase
Length = 334
Score = 35.0 bits (79), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 1523 VEPIAEYNMPQ--YVLREFKV-TDARDATSRTLRQFQLID----WPEQGVPKSGDGFIDF 1575
+ P+ ++ +P+ V R KV T+ A + +R F++ WP P++ D F+ F
Sbjct: 170 IAPLGKHKLPEGGEVRRVQKVQTEQEVAEAAGMRYFRIAATDHVWP---TPENIDRFLAF 226
Query: 1576 IGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLE 1614
QD + HC AGVG+T F+ ++ +L+
Sbjct: 227 Y-------RTLPQDAWLHFHCEAGVGKTTAFMVMTDMLK 258
>pdb|1D5R|A Chain A, Crystal Structure Of The Pten Tumor Suppressor
Length = 324
Score = 33.9 bits (76), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 423 VHCSAGVGRTGCFIVIDAMIER---IKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHD 479
+HC AG GRTG I ++ R +K + +D YG V R ++ + ++ +Y++ +
Sbjct: 116 IHCKAGKGRTGVMICA-YLLHRGKFLKAQEALDFYGEVRT-RDKKGVTIPSQRRYVYYYS 173
Query: 480 ALLEAVL 486
LL+ L
Sbjct: 174 YLLKNHL 180
Score = 33.9 bits (76), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 934 VHCSAGVGRTGCFIVIDAMIER---IKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHD 990
+HC AG GRTG I ++ R +K + +D YG V R ++ + ++ +Y++ +
Sbjct: 116 IHCKAGKGRTGVMICA-YLLHRGKFLKAQEALDFYGEVRT-RDKKGVTIPSQRRYVYYYS 173
Query: 991 ALLEAVL 997
LL+ L
Sbjct: 174 YLLKNHL 180
>pdb|3F41|A Chain A, Structure Of The Tandemly Repeated Protein Tyrosine
Phosphatase Like Phytase From Mitsuokella Multacida
pdb|3F41|B Chain B, Structure Of The Tandemly Repeated Protein Tyrosine
Phosphatase Like Phytase From Mitsuokella Multacida
Length = 629
Score = 33.9 bits (76), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Query: 659 PGRDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVIDLFQ 718
P D F++F + K D + HC AG+GRT +F+ + +L+ + D+ Q
Sbjct: 217 PDVDKFLEFYKSLPK-------DAWLHYHCYAGMGRTTIFMVMHDILKNAKDVSFDDIIQ 269
Query: 719 TVRIL 723
+++
Sbjct: 270 RQKLI 274
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 1570 DGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVIDLFQTVR 1629
D F++F + K D + HC AG+GRT +F+ + +L+ + D+ Q +
Sbjct: 220 DKFLEFYKSLPK-------DAWLHYHCYAGMGRTTIFMVMHDILKNAKDVSFDDIIQRQK 272
Query: 1630 IL 1631
++
Sbjct: 273 LI 274
>pdb|1OHE|A Chain A, Structure Of Cdc14b Phosphatase With A Peptide Ligand
Length = 348
Score = 33.9 bits (76), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 11/63 (17%)
Query: 681 DGPITVHCSAGVGRTGVFITLSIVLE-RMQYEGVIDLFQTVRILRTQRPAMVQTESIEPG 739
+G I VH AG+GRTG I I+ RM +T+ +R RP V I P
Sbjct: 269 EGAIAVHSKAGLGRTGTLIACYIMKHYRMTAA------ETIAWVRICRPGSV----IGPQ 318
Query: 740 QQF 742
QQF
Sbjct: 319 QQF 321
>pdb|4ERC|A Chain A, Structure Of Vhz Bound To Metavanadate
pdb|4ERC|B Chain B, Structure Of Vhz Bound To Metavanadate
Length = 150
Score = 33.1 bits (74), Expect = 1.6, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 11/76 (14%)
Query: 1566 PKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVIDLF 1625
P D F+ + + + E G VHC+ G GRTG + +V ER G
Sbjct: 71 PDQIDRFVQIVDEANARGEAVG------VHCALGFGRTGTMLACYLVKERGLAAG----- 119
Query: 1626 QTVRILRTQRPAMVQT 1641
+ +R RP ++T
Sbjct: 120 DAIAEIRRLRPGSIET 135
Score = 32.0 bits (71), Expect = 3.5, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 11/72 (15%)
Query: 662 DGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVIDLFQTVR 721
D F+ + + + E G VHC+ G GRTG + +V ER G +
Sbjct: 75 DRFVQIVDEANARGEAVG------VHCALGFGRTGTMLACYLVKERGLAAG-----DAIA 123
Query: 722 ILRTQRPAMVQT 733
+R RP ++T
Sbjct: 124 EIRRLRPGSIET 135
>pdb|2DXP|A Chain A, Crystal Structure Of The Complex Of The Archaeal
Sulfolobus Ptp-Fold Phosphatase With Phosphopeptides
A-(P)y-R
pdb|2I6O|A Chain A, Crystal Structure Of The Complex Of The Archaeal
Sulfolobus Ptp-fold Phosphatase With Phosphopeptides
N-g-(p)y-k-n
pdb|2I6P|A Chain A, Crystal Structure Of The Complex Of The Archaeal
Sulfolobus Ptp-fold Phosphatase With Pnpp
Length = 161
Score = 32.7 bits (73), Expect = 1.7, Method: Composition-based stats.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 16/105 (15%)
Query: 657 GIPGRDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVL-ERMQYEGVID 715
G+P F+ + + KE G + VH G+GRTG + ++L E ++ E ID
Sbjct: 71 GVPSDSQFLTIMKWLLSEKE-----GNL-VHSVGGIGRTGTILASYLILTEGLEVESAID 124
Query: 716 LFQTVRILRTQRPAMVQTESIEPGQQFTWDHSSMEMNKAKNRYAN 760
VR++ RP VQT E F M + KN Y+N
Sbjct: 125 ---EVRLV---RPGAVQTYEQE---MFLLRVEGMRKSWLKNIYSN 160
>pdb|3MOZ|A Chain A, Structure Of The Ptp-Like Phytase From Selenomonas
Ruminantium In Complex With Myo-Inositol
(1,2,3,5,6)pentakisphosphate
pdb|3MOZ|B Chain B, Structure Of The Ptp-Like Phytase From Selenomonas
Ruminantium In Complex With Myo-Inositol
(1,2,3,5,6)pentakisphosphate
Length = 314
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 17/99 (17%)
Query: 1523 VEPIAEYNMPQ--YVLREFKV-TDARDATSRTLRQFQLID----WPEQGVPKSGDGFIDF 1575
+ P+ ++ +P+ V R KV T+ A + +R F++ WP P++ D F+ F
Sbjct: 150 IAPLGKHKLPEGGEVRRVQKVQTEQEVAEAAGMRYFRIAATDHVWP---TPENIDRFLAF 206
Query: 1576 IGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLE 1614
QD + H AGVGRT F+ ++ +L+
Sbjct: 207 Y-------RTLPQDAWLHFHAEAGVGRTTAFMVMTDMLK 238
>pdb|3O3L|A Chain A, Structure Of The Ptp-Like Phytase From Selenomonas
Ruminantium In Complex With Myo-Inositol
(1,3,4,5)tetrakisphosphate
pdb|3O3L|B Chain B, Structure Of The Ptp-Like Phytase From Selenomonas
Ruminantium In Complex With Myo-Inositol
(1,3,4,5)tetrakisphosphate
Length = 340
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 17/99 (17%)
Query: 1523 VEPIAEYNMPQ--YVLREFKV-TDARDATSRTLRQFQLID----WPEQGVPKSGDGFIDF 1575
+ P+ ++ +P+ V R KV T+ A + +R F++ WP P++ D F+ F
Sbjct: 176 IAPLGKHKLPEGGEVRRVQKVQTEQEVAEAAGMRYFRIAATDHVWP---TPENIDRFLAF 232
Query: 1576 IGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLE 1614
QD + H AGVGRT F+ ++ +L+
Sbjct: 233 Y-------RTLPQDAWLHFHSEAGVGRTTAFMVMTDMLK 264
>pdb|3MMJ|A Chain A, Structure Of The Ptp-Like Phytase From Selenomonas
Ruminantium In Complex With Myo-Inositol Hexakisphosphate
pdb|3MMJ|B Chain B, Structure Of The Ptp-Like Phytase From Selenomonas
Ruminantium In Complex With Myo-Inositol Hexakisphosphate
Length = 314
Score = 32.3 bits (72), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 17/99 (17%)
Query: 1523 VEPIAEYNMPQ--YVLREFKV-TDARDATSRTLRQFQLID----WPEQGVPKSGDGFIDF 1575
+ P+ ++ +P+ V R KV T+ A + +R F++ WP P++ D F+ F
Sbjct: 150 IAPLGKHKLPEGGEVRRVQKVQTEQEVAEAAGMRYFRIAATDHVWP---TPENIDRFLAF 206
Query: 1576 IGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLE 1614
QD + H AGVGRT F+ ++ +L+
Sbjct: 207 Y-------RTLPQDAWLHFHSEAGVGRTTAFMVMTDMLK 238
>pdb|2IMG|A Chain A, Crystal Structure Of Dual Specificity Protein Phosphatase 23
From Homo Sapiens In Complex With Ligand Malate Ion
Length = 151
Score = 32.3 bits (72), Expect = 2.5, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 11/76 (14%)
Query: 1566 PKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVIDLF 1625
P D F+ + + + E G VHC+ G GRTG + +V ER G
Sbjct: 72 PDQIDRFVQIVDEANARGEAVG------VHCALGFGRTGTXLACYLVKERGLAAG----- 120
Query: 1626 QTVRILRTQRPAMVQT 1641
+ +R RP ++T
Sbjct: 121 DAIAEIRRLRPGSIET 136
Score = 31.2 bits (69), Expect = 5.5, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 11/72 (15%)
Query: 662 DGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVIDLFQTVR 721
D F+ + + + E G VHC+ G GRTG + +V ER G +
Sbjct: 76 DRFVQIVDEANARGEAVG------VHCALGFGRTGTXLACYLVKERGLAAG-----DAIA 124
Query: 722 ILRTQRPAMVQT 733
+R RP ++T
Sbjct: 125 EIRRLRPGSIET 136
>pdb|3QP9|A Chain A, The Structure Of A C2-Type Ketoreductase From A Modular
Polyketide Synthase
pdb|3QP9|B Chain B, The Structure Of A C2-Type Ketoreductase From A Modular
Polyketide Synthase
pdb|3QP9|C Chain C, The Structure Of A C2-Type Ketoreductase From A Modular
Polyketide Synthase
pdb|3QP9|D Chain D, The Structure Of A C2-Type Ketoreductase From A Modular
Polyketide Synthase
Length = 525
Score = 32.3 bits (72), Expect = 2.5, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 375 LQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGR 431
L AW + P HPAP F R A +LE +GV P+ + H + VGR
Sbjct: 111 LSLLAWDESAHPGHPAP---FTRGTGATLTLVQALEDAGVAAPLW-CVTHGAVSVGR 163
Score = 32.3 bits (72), Expect = 2.5, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 886 LQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGR 942
L AW + P HPAP F R A +LE +GV P+ + H + VGR
Sbjct: 111 LSLLAWDESAHPGHPAP---FTRGTGATLTLVQALEDAGVAAPLW-CVTHGAVSVGR 163
>pdb|2PT0|A Chain A, Structure Of Selenomonas Ruminantium Ptp-Like Phytase With
The Active Site Cysteine Oxidized To Cysteine-Sulfonic
Acid
pdb|2PT0|B Chain B, Structure Of Selenomonas Ruminantium Ptp-Like Phytase With
The Active Site Cysteine Oxidized To Cysteine-Sulfonic
Acid
Length = 340
Score = 32.0 bits (71), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 17/99 (17%)
Query: 1523 VEPIAEYNMPQ--YVLREFKV-TDARDATSRTLRQFQLID----WPEQGVPKSGDGFIDF 1575
+ P+ ++ +P+ V R KV T+ A + +R F++ WP P++ D F+ F
Sbjct: 176 IAPLGKHKLPEGGEVRRVQKVQTEQEVAEAAGMRYFRIAATDHVWP---TPENIDRFLAF 232
Query: 1576 IGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLE 1614
QD + H AGVGRT F+ ++ +L+
Sbjct: 233 Y-------RTLPQDAWLHFHXEAGVGRTTAFMVMTDMLK 264
>pdb|1U24|A Chain A, Crystal Structure Of Selenomonas Ruminantium Phytase
pdb|1U24|B Chain B, Crystal Structure Of Selenomonas Ruminantium Phytase
pdb|1U25|A Chain A, Crystal Structure Of Selenomonas Ruminantium Phytase
Complexed With Persulfated Phytate In The C2221 Crystal
Form
pdb|1U25|B Chain B, Crystal Structure Of Selenomonas Ruminantium Phytase
Complexed With Persulfated Phytate In The C2221 Crystal
Form
pdb|1U25|C Chain C, Crystal Structure Of Selenomonas Ruminantium Phytase
Complexed With Persulfated Phytate In The C2221 Crystal
Form
Length = 337
Score = 31.2 bits (69), Expect = 4.9, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 17/91 (18%)
Query: 1523 VEPIAEYNMPQ--YVLREFKV-TDARDATSRTLRQFQLID----WPEQGVPKSGDGFIDF 1575
+ P+ ++ +P+ V R KV T+ A + R F++ WP P++ D F+ F
Sbjct: 171 IAPLGKHKLPEGGEVRRVQKVQTEQEVAEAAGXRYFRIAATDHVWP---TPENIDRFLAF 227
Query: 1576 IGQVHKTKEQFGQDGPITVHCSAGVGRTGVF 1606
++T QD + HC AGVGRT F
Sbjct: 228 ----YRT---LPQDAWLHFHCEAGVGRTTAF 251
>pdb|2Q05|A Chain A, Crystal Structure Of TyrSER PROTEIN PHOSPHATASE FROM
VACCINIA VIRUS Wr
pdb|2Q05|B Chain B, Crystal Structure Of TyrSER PROTEIN PHOSPHATASE FROM
VACCINIA VIRUS Wr
pdb|2Q05|C Chain C, Crystal Structure Of TyrSER PROTEIN PHOSPHATASE FROM
VACCINIA VIRUS Wr
pdb|2Q05|D Chain D, Crystal Structure Of TyrSER PROTEIN PHOSPHATASE FROM
VACCINIA VIRUS Wr
Length = 195
Score = 31.2 bits (69), Expect = 5.7, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 9/48 (18%)
Query: 1730 PLIVHCSAGVGRTGCFIV--IDAKEQ-------YQFCYHAALEYLGSF 1768
P++VHC+AGV R+G I+ + +K + + + YH+ + G+F
Sbjct: 127 PVLVHCAAGVNRSGAXILAYLXSKNKESLPXLYFLYVYHSXRDLRGAF 174
>pdb|1SEF|A Chain A, Crystal Structure Of Cupin Domain Protein Ef2996 From
Enterococcus Faecalis
Length = 274
Score = 31.2 bits (69), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 1424 FQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQ---FGQDGPITV 1463
F+ +D G PK G F+D+I HK +Q FG DG T+
Sbjct: 45 FENVDISILGSPKLGATFVDYIATFHKNGQQTTGFGGDGIQTL 87
Score = 31.2 bits (69), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 1555 FQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQ---FGQDGPITV 1594
F+ +D G PK G F+D+I HK +Q FG DG T+
Sbjct: 45 FENVDISILGSPKLGATFVDYIATFHKNGQQTTGFGGDGIQTL 87
>pdb|3JYU|A Chain A, Crystal Structure Of The N-Terminal Domains Of The
Ubiquitin Specific Peptidase 4 (Usp4)
pdb|3JYU|B Chain B, Crystal Structure Of The N-Terminal Domains Of The
Ubiquitin Specific Peptidase 4 (Usp4)
Length = 231
Score = 30.4 bits (67), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 15/87 (17%)
Query: 448 DKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDA-----LLEAVLCGNTEIPARSLHVHIQ 502
+K ++ YG C+ Q+ + + + +F+ LLE LC N++ P L H
Sbjct: 104 NKLLNWYG---CVEGQQPIVRKVVEHGLFVKHCKVEVYLLELKLCENSD-PTNVLSCHFS 159
Query: 503 KLMSMEVGDTSTGMELEFKKLSNIRAE 529
K DT +E E +KL NI AE
Sbjct: 160 K------ADTIATIEKEXRKLFNIPAE 180
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,577,347
Number of Sequences: 62578
Number of extensions: 2215575
Number of successful extensions: 6724
Number of sequences better than 100.0: 148
Number of HSP's better than 100.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 4391
Number of HSP's gapped (non-prelim): 1313
length of query: 1773
length of database: 14,973,337
effective HSP length: 113
effective length of query: 1660
effective length of database: 7,902,023
effective search space: 13117358180
effective search space used: 13117358180
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)