RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8773
(1773 letters)
>1lar_A Protein (LAR); tyrosine phosphatease, LAR protein, hydrolase; 2.00A
{Homo sapiens} SCOP: c.45.1.2 c.45.1.2 PDB: 2fh7_A
2nv5_A
Length = 575
Score = 547 bits (1412), Expect = e-177
Identities = 256/373 (68%), Positives = 311/373 (83%), Gaps = 11/373 (2%)
Query: 200 ISRLAQHIENLKANDNLKFSQEYESIEPGQQFTWDHSSMEMNKAKNRYANVIAYDHSRVI 259
I+ LA +IE LKAND LKFSQEYESI+PGQQFTW++S++E+NK KNRYANVIAYDHSRVI
Sbjct: 2 ITDLADNIERLKANDGLKFSQEYESIDPGQQFTWENSNLEVNKPKNRYANVIAYDHSRVI 61
Query: 260 LSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLE 319
L+++DG+PGSDYINANY DGYRK NAY+ATQGPL ET+GDFWRMVWE R+ T+VMMT+LE
Sbjct: 62 LTSIDGVPGSDYINANYIDGYRKQNAYIATQGPLPETMGDFWRMVWEQRTATVVMMTRLE 121
Query: 320 ERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYCIRTFMINKGADSERREIKQLQFTA 379
E++R+KCDQYWP+RGTET G I VTL D ELA+Y +RTF ++K SE+RE++Q QF A
Sbjct: 122 EKSRVKCDQYWPARGTETCGLIQVTLLDTVELATYTVRTFALHKSGSSEKRELRQFQFMA 181
Query: 380 WPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVID 439
WPDHGVPE+P P L FLRRV+A NP GP++VHCSAGVGRTGCFIVID
Sbjct: 182 WPDHGVPEYPTPILAFLRRVKACNPLDA-----------GPMVVHCSAGVGRTGCFIVID 230
Query: 440 AMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLEAVLCGNTEIPARSLHV 499
AM+ER+KH+KTVDIYGHVTC+R+QRNYMVQTEDQY+FIH+ALLEA CG+TE+PAR+L+
Sbjct: 231 AMLERMKHEKTVDIYGHVTCMRSQRNYMVQTEDQYVFIHEALLEAATCGHTEVPARNLYA 290
Query: 500 HIQKLMSMEVGDTSTGMELEFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSRVC 559
HIQKL + G++ T MELEFK L++ +A SRFISA+LPCNK KNRLV+I+P E +RVC
Sbjct: 291 HIQKLGQVPPGESVTAMELEFKLLASSKAHTSRFISANLPCNKFKNRLVNIMPYELTRVC 350
Query: 560 LTPVRGDGFIDFI 572
L P+RG D+I
Sbjct: 351 LQPIRGVEGSDYI 363
Score = 458 bits (1180), Expect = e-144
Identities = 197/299 (65%), Positives = 240/299 (80%), Gaps = 13/299 (4%)
Query: 713 VIDLFQTVRILRTQRPAMVQTE--SIEPGQQFTWDHSSMEMNKAKNRYANVIAYDHSRVI 770
+ DL + L+ E SI+PGQQFTW++S++E+NK KNRYANVIAYDHSRVI
Sbjct: 2 ITDLADNIERLKANDGLKFSQEYESIDPGQQFTWENSNLEVNKPKNRYANVIAYDHSRVI 61
Query: 771 LSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLE 830
L+++DG+PGSDYINANY DGYRK NAY+ATQGPL ET+GDFWRMVWE R+ T+VMMT+LE
Sbjct: 62 LTSIDGVPGSDYINANYIDGYRKQNAYIATQGPLPETMGDFWRMVWEQRTATVVMMTRLE 121
Query: 831 ERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYCIRTFMINKGADSERREIKQLQFTA 890
E++R+KCDQYWP+RGTET G I VTL D ELA+Y +RTF ++K SE+RE++Q QF A
Sbjct: 122 EKSRVKCDQYWPARGTETCGLIQVTLLDTVELATYTVRTFALHKSGSSEKRELRQFQFMA 181
Query: 891 WPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVID 950
WPDHGVPE+P P L FLRRV+A NP GP++VHCSAGVGRTGCFIVID
Sbjct: 182 WPDHGVPEYPTPILAFLRRVKACNPLDA-----------GPMVVHCSAGVGRTGCFIVID 230
Query: 951 AMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLEAVLCGNTEIPASSQM 1009
AM+ER+KH+KTVDIYGHVTC+R+QRNYMVQTEDQY+FIH+ALLEA CG+TE+PA +
Sbjct: 231 AMLERMKHEKTVDIYGHVTCMRSQRNYMVQTEDQYVFIHEALLEAATCGHTEVPARNLY 289
Score = 454 bits (1170), Expect = e-143
Identities = 142/393 (36%), Positives = 197/393 (50%), Gaps = 63/393 (16%)
Query: 662 DGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVIDLFQTVR 721
+ F+ +V GP+ VHCSAGVGRTG FI + +LERM++E +D++ V
Sbjct: 192 TPILAFLRRVKACNPL--DAGPMVVHCSAGVGRTGCFIVIDAMLERMKHEKTVDIYGHVT 249
Query: 722 ILRTQRPAMVQTE------------------------------SIEPGQQFTWDHSSMEM 751
+R+QR MVQTE ++ME+
Sbjct: 250 CMRSQRNYMVQTEDQYVFIHEALLEAATCGHTEVPARNLYAHIQKLGQVPPGESVTAMEL 309
Query: 752 ----------------------NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCD 789
NK KNR N++ Y+ +RV L + G+ GSDYINA++ D
Sbjct: 310 EFKLLASSKAHTSRFISANLPCNKFKNRLVNIMPYELTRVCLQPIRGVEGSDYINASFLD 369
Query: 790 GYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETY 849
GYR+ AY+ATQGPL E+ DFWRM+WE S IVM+TKL E R KC QYWP+ + Y
Sbjct: 370 GYRQQKAYIATQGPLAESTEDFWRMLWEHNSTIIVMLTKLREMGREKCHQYWPAERSARY 429
Query: 850 GHITVTLQDVQELASYCIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRR 909
+ V + Y +R F + D + R I+Q QFT WP+ GVP+ F+ F+ +
Sbjct: 430 QYFVVDPMAEYNMPQYILREFKVTDARDGQSRTIRQFQFTDWPEQGVPKTGEGFIDFIGQ 489
Query: 910 VRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVT 969
V GP+ VHCSAGVGRTG FI + ++ER++++ VD++ V
Sbjct: 490 VHKTKEQFGQ---------DGPITVHCSAGVGRTGVFITLSIVLERMRYEGVVDMFQTVK 540
Query: 970 CLRAQRNYMVQTEDQYMFIHDALLEAVLCGNTE 1002
LR QR MVQTEDQY + A LE + +
Sbjct: 541 TLRTQRPAMVQTEDQYQLCYRAALEYLGSFDHY 573
Score = 375 bits (964), Expect = e-114
Identities = 113/305 (37%), Positives = 159/305 (52%), Gaps = 10/305 (3%)
Query: 187 FQTPGMVSHPPIPISRLAQHIENLKANDNLKFSQEYESIEPGQQFTWDHSSMEMNKAKNR 246
T + I +L Q + S + +++ NK KNR
Sbjct: 279 GHTEVPARNLYAHIQKLGQVPPGESVTAMELEFKLLASSKAHTSRF-ISANLPCNKFKNR 337
Query: 247 YANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDFWRMVWE 306
N++ Y+ +RV L + G+ GSDYINA++ DGYR+ AY+ATQGPL E+ DFWRM+WE
Sbjct: 338 LVNIMPYELTRVCLQPIRGVEGSDYINASFLDGYRQQKAYIATQGPLAESTEDFWRMLWE 397
Query: 307 LRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYCIRTFMINKGAD 366
S IVM+TKL E R KC QYWP+ + Y + V + Y +R F + D
Sbjct: 398 HNSTIIVMLTKLREMGREKCHQYWPAERSARYQYFVVDPMAEYNMPQYILREFKVTDARD 457
Query: 367 SERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCS 426
+ R I+Q QFT WP+ GVP+ F+ F+ +V GP+ VHCS
Sbjct: 458 GQSRTIRQFQFTDWPEQGVPKTGEGFIDFIGQVHKTKEQFGQ---------DGPITVHCS 508
Query: 427 AGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLEAVL 486
AGVGRTG FI + ++ER++++ VD++ V LR QR MVQTEDQY + A LE +
Sbjct: 509 AGVGRTGVFITLSIVLERMRYEGVVDMFQTVKTLRTQRPAMVQTEDQYQLCYRAALEYLG 568
Query: 487 CGNTE 491
+
Sbjct: 569 SFDHY 573
Score = 252 bits (645), Expect = 4e-72
Identities = 136/201 (67%), Positives = 156/201 (77%), Gaps = 30/201 (14%)
Query: 1296 KTEFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASF 1355
+ EFK L++ +A SRFISA+LPCNK KNRLV+I+P E +RVCL P+RG+EGSDYINASF
Sbjct: 308 ELEFKLLASSKAHTSRFISANLPCNKFKNRLVNIMPYELTRVCLQPIRGVEGSDYINASF 367
Query: 1356 IDGYRLRSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------- 1402
+DGYR + AYIATQGPLA++TEDFWRMLWEHNSTI+VMLTKL+EMGR
Sbjct: 368 LDGYRQQKAYIATQGPLAESTEDFWRMLWEHNSTIIVMLTKLREMGREKCHQYWPAERSA 427
Query: 1403 -----------------YVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFI 1445
Y+LREFKVTDARD SRT+RQFQ DWPEQGVPK+G+GFIDFI
Sbjct: 428 RYQYFVVDPMAEYNMPQYILREFKVTDARDGQSRTIRQFQFTDWPEQGVPKTGEGFIDFI 487
Query: 1446 GQVHKTKEQFGQDGPITVHCS 1466
GQVHKTKEQFGQDGPITVHCS
Sbjct: 488 GQVHKTKEQFGQDGPITVHCS 508
Score = 225 bits (576), Expect = 5e-63
Identities = 71/201 (35%), Positives = 105/201 (52%), Gaps = 34/201 (16%)
Query: 1296 KTEFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASF 1355
E++ + + +++L NK KNR +++ + SRV LT + G+ GSDYINA++
Sbjct: 21 SQEYESIDPGQQFTWE--NSNLEVNKPKNRYANVIAYDHSRVILTSIDGVPGSDYINANY 78
Query: 1356 IDGYRLRSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------- 1402
IDGYR ++AYIATQGPL +T DFWRM+WE + VVM+T+L+E R
Sbjct: 79 IDGYRKQNAYIATQGPLPETMGDFWRMVWEQRTATVVMMTRLEEKSRVKCDQYWPARGTE 138
Query: 1403 -----------------YVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFI 1445
Y +R F + + + R LRQFQ + WP+ GVP+ + F+
Sbjct: 139 TCGLIQVTLLDTVELATYTVRTFALHKSGSSEKRELRQFQFMAWPDHGVPEYPTPILAFL 198
Query: 1446 GQVHKTKEQFGQDGPITVHCS 1466
+V GP+ VHCS
Sbjct: 199 RRVKACNPL--DAGPMVVHCS 217
Score = 224 bits (573), Expect = 1e-62
Identities = 120/140 (85%), Positives = 134/140 (95%)
Query: 1503 QEKCHQYWPSERSIRYEWFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQLIDWPE 1562
+EKCHQYWP+ERS RY++FVV+P+AEYNMPQY+LREFKVTDARD SRT+RQFQ DWPE
Sbjct: 414 REKCHQYWPAERSARYQYFVVDPMAEYNMPQYILREFKVTDARDGQSRTIRQFQFTDWPE 473
Query: 1563 QGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVI 1622
QGVPK+G+GFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERM+YEGV+
Sbjct: 474 QGVPKTGEGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMRYEGVV 533
Query: 1623 DLFQTVRILRTQRPAMVQTE 1642
D+FQTV+ LRTQRPAMVQTE
Sbjct: 534 DMFQTVKTLRTQRPAMVQTE 553
Score = 186 bits (473), Expect = 1e-49
Identities = 53/140 (37%), Positives = 78/140 (55%), Gaps = 2/140 (1%)
Query: 1503 QEKCHQYWPSERSIRYEWFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQLIDWPE 1562
+ KC QYWP+ + V + + Y +R F + + + R LRQFQ + WP+
Sbjct: 125 RVKCDQYWPARGTETCGLIQVTLLDTVELATYTVRTFALHKSGSSEKRELRQFQFMAWPD 184
Query: 1563 QGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVI 1622
GVP+ + F+ +V GP+ VHCSAGVGRTG FI + +LERM++E +
Sbjct: 185 HGVPEYPTPILAFLRRVKACNPL--DAGPMVVHCSAGVGRTGCFIVIDAMLERMKHEKTV 242
Query: 1623 DLFQTVRILRTQRPAMVQTE 1642
D++ V +R+QR MVQTE
Sbjct: 243 DIYGHVTCMRSQRNYMVQTE 262
Score = 107 bits (270), Expect = 6e-24
Identities = 52/70 (74%), Positives = 64/70 (91%)
Query: 593 SRLAQHIENLKANDNLKFSQEYESIEPGQQFTWDHSSMEMNKAKNRYANVIAYDHSRVIL 652
+ LA +IE LKAND LKFSQEYESI+PGQQFTW++S++E+NK KNRYANVIAYDHSRVIL
Sbjct: 3 TDLADNIERLKANDGLKFSQEYESIDPGQQFTWENSNLEVNKPKNRYANVIAYDHSRVIL 62
Query: 653 STVDGIPGRD 662
+++DG+PG D
Sbjct: 63 TSIDGVPGSD 72
Score = 77.8 bits (192), Expect = 2e-14
Identities = 34/94 (36%), Positives = 43/94 (45%), Gaps = 33/94 (35%)
Query: 1709 LVLLFILKSSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDA------------------ 1750
+ + + + E G + GP+ VHCSAGVGRTG FI +
Sbjct: 484 IDFIGQVHKTKEQFGQD---GPITVHCSAGVGRTGVFITLSIVLERMRYEGVVDMFQTVK 540
Query: 1751 ------------KEQYQFCYHAALEYLGSFDHYT 1772
++QYQ CY AALEYLGSFDHY
Sbjct: 541 TLRTQRPAMVQTEDQYQLCYRAALEYLGSFDHYA 574
Score = 69.7 bits (171), Expect = 5e-12
Identities = 26/72 (36%), Positives = 31/72 (43%), Gaps = 30/72 (41%)
Query: 1729 GPLIVHCSAGVGRTGCFIVIDA------------------------------KEQYQFCY 1758
GP++VHCSAGVGRTGCFIVIDA ++QY F +
Sbjct: 210 GPMVVHCSAGVGRTGCFIVIDAMLERMKHEKTVDIYGHVTCMRSQRNYMVQTEDQYVFIH 269
Query: 1759 HAALEYLGSFDH 1770
A LE
Sbjct: 270 EALLEAATCGHT 281
Score = 53.9 bits (130), Expect = 4e-07
Identities = 13/72 (18%), Positives = 31/72 (43%)
Query: 591 HCSRLAQHIENLKANDNLKFSQEYESIEPGQQFTWDHSSMEMNKAKNRYANVIAYDHSRV 650
+ + ++ ++ + + + +++ NK KNR N++ Y+ +RV
Sbjct: 290 AHIQKLGQVPPGESVTAMELEFKLLASSKAHTSRFISANLPCNKFKNRLVNIMPYELTRV 349
Query: 651 ILSTVDGIPGRD 662
L + G+ G D
Sbjct: 350 CLQPIRGVEGSD 361
Score = 50.0 bits (120), Expect = 6e-06
Identities = 29/33 (87%), Positives = 30/33 (90%)
Query: 561 TPVRGDGFIDFIGQVHKTKEQFGQDGPITVHCS 593
P G+GFIDFIGQVHKTKEQFGQDGPITVHCS
Sbjct: 476 VPKTGEGFIDFIGQVHKTKEQFGQDGPITVHCS 508
Score = 33.5 bits (77), Expect = 0.74
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 561 TPVRGDGFIDFIGQVHKTKEQFGQDGPITVHCS 593
P + F+ +V GP+ VHCS
Sbjct: 187 VPEYPTPILAFLRRVKACNPL--DAGPMVVHCS 217
>2jjd_A Receptor-type tyrosine-protein phosphatase epsilo; transmembrane,
phosphoprotein, consorti structural, glycoprotein, SGC,
PTPRE, membrane genomics; 3.20A {Homo sapiens}
Length = 599
Score = 543 bits (1402), Expect = e-176
Identities = 173/386 (44%), Positives = 238/386 (61%), Gaps = 15/386 (3%)
Query: 191 GMVSHPPIPISRLAQHIENLKANDNLKFSQEYESIEPGQ-QFTWDHSSMEMNKAKNRYAN 249
G + PIP+ L + I A+D +F +E+ S+ G Q T++ ++ E N+ KNRY N
Sbjct: 3 GPKKYFPIPVEHLEEEIRIRSADDCKQFREEFNSLPSGHIQGTFELANKEENREKNRYPN 62
Query: 250 VIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRS 309
++ DHSRVILS +DGIP SDYINA+Y DGY++ N ++A QGP QET+ DFWRMVWE +S
Sbjct: 63 ILPNDHSRVILSQLDGIPCSDYINASYIDGYKEKNKFIAAQGPKQETVNDFWRMVWEQKS 122
Query: 310 VTIVMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYCIRTFMINKGAD--- 366
TIVM+T L+ER KC QYWP +G TYG+I V ++D L Y IR F I
Sbjct: 123 ATIVMLTNLKERKEEKCHQYWPDQGCWTYGNIRVCVEDCVVLVDYTIRKFCIQPQLPDGC 182
Query: 367 SERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCS 426
R + QL FT+WPD GVP P L FL++V+ +NP GP++VHCS
Sbjct: 183 KAPRLVSQLHFTSWPDFGVPFTPIGMLKFLKKVKTLNPVHA-----------GPIVVHCS 231
Query: 427 AGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLEAVL 486
AGVGRTG FIVIDAM+ + ++ VD++ V+ +R QR MVQT+ QY FI+ ALLE L
Sbjct: 232 AGVGRTGTFIVIDAMMAMMHAEQKVDVFEFVSRIRNQRPQMVQTDMQYTFIYQALLEYYL 291
Query: 487 CGNTEIPARSLHVHIQKLMSMEVGDTSTGMELEFKKLSNIRAEPSRFISASLPCNKHKNR 546
G+TE+ SL H+Q + G+E EF+KL+N+R + +LP N K R
Sbjct: 292 YGDTELDVSSLEKHLQTMHGTTTHFDKIGLEEEFRKLTNVRIMKENMRTGNLPANMKKAR 351
Query: 547 LVHILPVESSRVCLTPVRGDGFIDFI 572
++ I+P + +RV L+ RG + D+I
Sbjct: 352 VIQIIPYDFNRVILSMKRGQEYTDYI 377
Score = 452 bits (1166), Expect = e-142
Identities = 130/402 (32%), Positives = 195/402 (48%), Gaps = 69/402 (17%)
Query: 662 DGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVIDLFQTVR 721
G + F+ +V GPI VHCSAGVGRTG FI + ++ M E +D+F+ V
Sbjct: 206 IGMLKFLKKVKTLNPV--HAGPIVVHCSAGVGRTGTFIVIDAMMAMMHAEQKVDVFEFVS 263
Query: 722 ILRTQRPAMVQTES------------------------------IEPGQQFTWDHSSMEM 751
+R QRP MVQT+ G +D +E
Sbjct: 264 RIRNQRPQMVQTDMQYTFIYQALLEYYLYGDTELDVSSLEKHLQTMHGTTTHFDKIGLEE 323
Query: 752 ----------------------NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCD 789
N K R +I YD +RVILS G +DYINA++ D
Sbjct: 324 EFRKLTNVRIMKENMRTGNLPANMKKARVIQIIPYDFNRVILSMKRGQEYTDYINASFID 383
Query: 790 GYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETY 849
GYR+ + ++ATQGPL T+ DFWRM+WE +S TIVM+T+++ER + KC QYWP+ G+ T+
Sbjct: 384 GYRQKDYFIATQGPLAHTVEDFWRMIWEWKSHTIVMLTEVQEREQDKCYQYWPTEGSVTH 443
Query: 850 GHITVTLQDVQELASYCIRTFMI-----NKGADSERREIKQLQFTAWPDHGVPEHPAPFL 904
G IT+ +++ + IR F++ + R ++Q F WP+ G+P +
Sbjct: 444 GEITIEIKNDTLSEAISIRDFLVTLNQPQARQGEQVRVVRQFHFHGWPEIGIPAEGKGMI 503
Query: 905 LFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDI 964
+ V+ T + P+ VHCSAG GRTG FI + ++ER+K + +D+
Sbjct: 504 DLIAAVQKQQQQTGN----------HPITVHCSAGAGRTGTFIALSNILERVKAEGLLDV 553
Query: 965 YGHVTCLRAQRNYMVQTEDQYMFIHDALLEAVLCGNTEIPAS 1006
+ V LR QR +MVQT +QY F + + + + +
Sbjct: 554 FQAVKSLRLQRPHMVQTLEQYEFCYKVVQDFIDIFSDYAAHH 595
Score = 434 bits (1118), Expect = e-135
Identities = 144/318 (45%), Positives = 191/318 (60%), Gaps = 17/318 (5%)
Query: 713 VIDLFQTVRILRTQRPAMVQTE--SIEPGQ-QFTWDHSSMEMNKAKNRYANVIAYDHSRV 769
V L + +RI + E S+ G Q T++ ++ E N+ KNRY N++ DHSRV
Sbjct: 12 VEHLEEEIRIRSADDCKQFREEFNSLPSGHIQGTFELANKEENREKNRYPNILPNDHSRV 71
Query: 770 ILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKL 829
ILS +DGIP SDYINA+Y DGY++ N ++A QGP QET+ DFWRMVWE +S TIVM+T L
Sbjct: 72 ILSQLDGIPCSDYINASYIDGYKEKNKFIAAQGPKQETVNDFWRMVWEQKSATIVMLTNL 131
Query: 830 EERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYCIRTFMINKGAD---SERREIKQL 886
+ER KC QYWP +G TYG+I V ++D L Y IR F I R + QL
Sbjct: 132 KERKEEKCHQYWPDQGCWTYGNIRVCVEDCVVLVDYTIRKFCIQPQLPDGCKAPRLVSQL 191
Query: 887 QFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCF 946
FT+WPD GVP P L FL++V+ +NP GP++VHCSAGVGRTG F
Sbjct: 192 HFTSWPDFGVPFTPIGMLKFLKKVKTLNPVHA-----------GPIVVHCSAGVGRTGTF 240
Query: 947 IVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLEAVLCGNTEIPAS 1006
IVIDAM+ + ++ VD++ V+ +R QR MVQT+ QY FI+ ALLE L G+TE+ S
Sbjct: 241 IVIDAMMAMMHAEQKVDVFEFVSRIRNQRPQMVQTDMQYTFIYQALLEYYLYGDTELDVS 300
Query: 1007 SQMITRKDDPTVSLQDPY 1024
S + +
Sbjct: 301 SLEKHLQTMHGTTTHFDK 318
Score = 381 bits (980), Expect = e-116
Identities = 101/322 (31%), Positives = 161/322 (50%), Gaps = 18/322 (5%)
Query: 186 NFQTPGMVSHPPIPISRLAQHIENLKANDNLKFSQEYESIE--PGQQFTWDHSSMEMNKA 243
+ L D + +E+ + + ++ N
Sbjct: 289 YYLYGDTELDVSSLEKHLQTMHGTTTHFDKIGLEEEFRKLTNVRIMKENMRTGNLPANMK 348
Query: 244 KNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDFWRM 303
K R +I YD +RVILS G +DYINA++ DGYR+ + ++ATQGPL T+ DFWRM
Sbjct: 349 KARVIQIIPYDFNRVILSMKRGQEYTDYINASFIDGYRQKDYFIATQGPLAHTVEDFWRM 408
Query: 304 VWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYCIRTFMI-- 361
+WE +S TIVM+T+++ER + KC QYWP+ G+ T+G IT+ +++ + IR F++
Sbjct: 409 IWEWKSHTIVMLTEVQEREQDKCYQYWPTEGSVTHGEITIEIKNDTLSEAISIRDFLVTL 468
Query: 362 ---NKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPV 418
+ R ++Q F WP+ G+P + + V+ T +
Sbjct: 469 NQPQARQGEQVRVVRQFHFHGWPEIGIPAEGKGMIDLIAAVQKQQQQTGN---------- 518
Query: 419 GPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIH 478
P+ VHCSAG GRTG FI + ++ER+K + +D++ V LR QR +MVQT +QY F +
Sbjct: 519 HPITVHCSAGAGRTGTFIALSNILERVKAEGLLDVFQAVKSLRLQRPHMVQTLEQYEFCY 578
Query: 479 DALLEAVLCGNTEIPARSLHVH 500
+ + + + A H H
Sbjct: 579 KVVQDFIDIFSDY-AAHHHHHH 599
Score = 248 bits (635), Expect = 1e-70
Identities = 83/204 (40%), Positives = 111/204 (54%), Gaps = 36/204 (17%)
Query: 1298 EFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFID 1357
EF+KL+N+R + +LP N K R++ I+P + +RV L+ RG E +DYINASFID
Sbjct: 324 EFRKLTNVRIMKENMRTGNLPANMKKARVIQIIPYDFNRVILSMKRGQEYTDYINASFID 383
Query: 1358 GYRLRSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR--------------- 1402
GYR + +IATQGPLA T EDFWRM+WE S +VMLT+++E +
Sbjct: 384 GYRQKDYFIATQGPLAHTVEDFWRMIWEWKSHTIVMLTEVQEREQDKCYQYWPTEGSVTH 443
Query: 1403 ---------------YVLREFKVT-----DARDATSRTLRQFQLIDWPEQGVPKSGDGFI 1442
+R+F VT + R +RQF WPE G+P G G I
Sbjct: 444 GEITIEIKNDTLSEAISIRDFLVTLNQPQARQGEQVRVVRQFHFHGWPEIGIPAEGKGMI 503
Query: 1443 DFIGQVHKTKEQFGQDGPITVHCS 1466
D I V K ++Q G + PITVHCS
Sbjct: 504 DLIAAVQKQQQQTG-NHPITVHCS 526
Score = 223 bits (570), Expect = 5e-62
Identities = 79/306 (25%), Positives = 116/306 (37%), Gaps = 71/306 (23%)
Query: 1296 KTEFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASF 1355
+ EF L + + + F A+ N+ KNR +ILP + SRV L+ + GI SDYINAS+
Sbjct: 31 REEFNSLPSGHIQGT-FELANKEENREKNRYPNILPNDHSRVILSQLDGIPCSDYINASY 89
Query: 1356 IDGYRLRSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------- 1402
IDGY+ ++ +IA QGP +T DFWRM+WE S +VMLT LKE
Sbjct: 90 IDGYKEKNKFIAAQGPKQETVNDFWRMVWEQKSATIVMLTNLKERKEEKCHQYWPDQGCW 149
Query: 1403 -----------------YVLREFKVTDARDAT---SRTLRQFQLIDWPEQGVPKSGDGFI 1442
Y +R+F + R + Q WP+ GVP + G +
Sbjct: 150 TYGNIRVCVEDCVVLVDYTIRKFCIQPQLPDGCKAPRLVSQLHFTSWPDFGVPFTPIGML 209
Query: 1443 DFIGQVHKTKEQFGQDGPITVHCS--------LLSLHINLTQSEWGREKPV--------- 1485
F+ +V GPI VHCS + + + E+ V
Sbjct: 210 KFLKKVKTLNPV--HAGPIVVHCSAGVGRTGTFIVIDAMMAMMH--AEQKVDVFEFVSRI 265
Query: 1486 -----------AQLSFCSVLIAYLVLFSQEKCHQYWPSERSIRYEWFVVEPIAEYNMPQY 1534
Q +F Y L S+ + +
Sbjct: 266 RNQRPQMVQTDMQYTFI-----YQALLEYYLYGDTELDVSSLEKHLQTMHGTTTHFDKIG 320
Query: 1535 VLREFK 1540
+ EF+
Sbjct: 321 LEEEFR 326
Score = 209 bits (535), Expect = 2e-57
Identities = 67/145 (46%), Positives = 89/145 (61%), Gaps = 6/145 (4%)
Query: 1503 QEKCHQYWPSERSIRYEWFVVEPIAEYNMPQYVLREFKVT-----DARDATSRTLRQFQL 1557
Q+KC+QYWP+E S+ + +E + +R+F VT + R +RQF
Sbjct: 428 QDKCYQYWPTEGSVTHGEITIEIKNDTLSEAISIRDFLVTLNQPQARQGEQVRVVRQFHF 487
Query: 1558 IDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQ 1617
WPE G+P G G ID I V K ++Q G + PITVHCSAG GRTG FI LS +LER++
Sbjct: 488 HGWPEIGIPAEGKGMIDLIAAVQKQQQQTG-NHPITVHCSAGAGRTGTFIALSNILERVK 546
Query: 1618 YEGVIDLFQTVRILRTQRPAMVQTE 1642
EG++D+FQ V+ LR QRP MVQT
Sbjct: 547 AEGLLDVFQAVKSLRLQRPHMVQTL 571
Score = 180 bits (459), Expect = 1e-47
Identities = 52/143 (36%), Positives = 72/143 (50%), Gaps = 5/143 (3%)
Query: 1503 QEKCHQYWPSERSIRYEWFVVEPIAEYNMPQYVLREFKVTDARDAT---SRTLRQFQLID 1559
+EKCHQYWP + Y V + Y +R+F + R + Q
Sbjct: 136 EEKCHQYWPDQGCWTYGNIRVCVEDCVVLVDYTIRKFCIQPQLPDGCKAPRLVSQLHFTS 195
Query: 1560 WPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYE 1619
WP+ GVP + G + F+ +V GPI VHCSAGVGRTG FI + ++ M E
Sbjct: 196 WPDFGVPFTPIGMLKFLKKVKTLNPV--HAGPIVVHCSAGVGRTGTFIVIDAMMAMMHAE 253
Query: 1620 GVIDLFQTVRILRTQRPAMVQTE 1642
+D+F+ V +R QRP MVQT+
Sbjct: 254 QKVDVFEFVSRIRNQRPQMVQTD 276
Score = 100 bits (252), Expect = 1e-21
Identities = 33/77 (42%), Positives = 47/77 (61%), Gaps = 3/77 (3%)
Query: 587 PITVHCSRLAQHIENLKANDNLKFSQEYESIEPGQ-QFTWDHSSMEMNKAKNRYANVIAY 645
PI V L + I A+D +F +E+ S+ G Q T++ ++ E N+ KNRY N++
Sbjct: 9 PIPV--EHLEEEIRIRSADDCKQFREEFNSLPSGHIQGTFELANKEENREKNRYPNILPN 66
Query: 646 DHSRVILSTVDGIPGRD 662
DHSRVILS +DGIP D
Sbjct: 67 DHSRVILSQLDGIPCSD 83
Score = 78.9 bits (195), Expect = 8e-15
Identities = 21/75 (28%), Positives = 27/75 (36%), Gaps = 30/75 (40%)
Query: 1729 GPLIVHCSAGVGRTGCFIVIDA------------------------------KEQYQFCY 1758
P+ VHCSAG GRTG FI + EQY+FCY
Sbjct: 519 HPITVHCSAGAGRTGTFIALSNILERVKAEGLLDVFQAVKSLRLQRPHMVQTLEQYEFCY 578
Query: 1759 HAALEYLGSFDHYTN 1773
+++ F Y
Sbjct: 579 KVVQDFIDIFSDYAA 593
Score = 62.4 bits (152), Expect = 1e-09
Identities = 24/62 (38%), Positives = 26/62 (41%), Gaps = 30/62 (48%)
Query: 1729 GPLIVHCSAGVGRTGCFIVIDA------------------------------KEQYQFCY 1758
GP++VHCSAGVGRTG FIVIDA QY F Y
Sbjct: 224 GPIVVHCSAGVGRTGTFIVIDAMMAMMHAEQKVDVFEFVSRIRNQRPQMVQTDMQYTFIY 283
Query: 1759 HA 1760
A
Sbjct: 284 QA 285
Score = 60.8 bits (148), Expect = 3e-09
Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 2/90 (2%)
Query: 575 VHKTKEQFGQDGPITVHCSRLAQHIENLKANDNLKFSQEYESIE--PGQQFTWDHSSMEM 632
+ + + ++ L D + +E+ + + ++
Sbjct: 286 LLEYYLYGDTELDVSSLEKHLQTMHGTTTHFDKIGLEEEFRKLTNVRIMKENMRTGNLPA 345
Query: 633 NKAKNRYANVIAYDHSRVILSTVDGIPGRD 662
N K R +I YD +RVILS G D
Sbjct: 346 NMKKARVIQIIPYDFNRVILSMKRGQEYTD 375
Score = 44.7 bits (106), Expect = 3e-04
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 561 TPVRGDGFIDFIGQVHKTKEQFGQDGPITVHCS 593
P G G ID I V K ++Q G + PITVHCS
Sbjct: 495 IPAEGKGMIDLIAAVQKQQQQTG-NHPITVHCS 526
Score = 33.5 bits (77), Expect = 0.82
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 561 TPVRGDGFIDFIGQVHKTKEQFGQDGPITVHCS 593
P G + F+ +V GPI VHCS
Sbjct: 201 VPFTPIGMLKFLKKVKTLNPV--HAGPIVVHCS 231
>2nlk_A Protein tyrosine phosphatase, receptor type, G VA (fragment);
PTPRG, R-PTP gamma, protein tyrosine phosphatase gamma,
D3S1 HPTPG, RPTPG, PTPG; 2.40A {Homo sapiens}
Length = 627
Score = 525 bits (1355), Expect = e-169
Identities = 168/392 (42%), Positives = 230/392 (58%), Gaps = 28/392 (7%)
Query: 197 PIPISRLAQHIENLKANDNLKFSQEYESI---EPGQQFTWDHSSMEMNKAKNRYANVIAY 253
IP+ + +HI L +N+ FS+++E + T +HS+ NK KNRY N++AY
Sbjct: 2 AIPVKQFVKHIGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAY 61
Query: 254 DHSRVILSTVDGI--PGSDYINANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVT 311
DHSRV L + G SDYINANY DGY K AY+ATQGPL+ T DFWRM+WE +
Sbjct: 62 DHSRVKLRPLPGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGI 121
Query: 312 IVMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYCIRTFMINK-------- 363
IVM+T L E+ R KCDQYWP+ +E YG+I VTL+ + A Y +R F I
Sbjct: 122 IVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTKVKKGQK 181
Query: 364 ---GADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGP 420
R + Q +T WPD GVPE+ P L F+RR A GP
Sbjct: 182 GNPKGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPET-----------GP 230
Query: 421 LIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDA 480
++VHCSAGVGRTG +IVID+M+++IK TV++ G + +R QRNY+VQTE+QY+FIHDA
Sbjct: 231 VLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDA 290
Query: 481 LLEAVLCGNTEIPARSLHVHIQKLMSMEVGDTSTGMELEFKKLSNIRAEPSRFISASLPC 540
LLEA+L TE+ + LH ++ ++ + T +E +FK ++ A+ SA C
Sbjct: 291 LLEAILGKETEVSSNQLHSYVNSIL-IPGVGGKTRLEKQFKLVTQCNAKYVECFSAQKEC 349
Query: 541 NKHKNRLVHILPVESSRVCLTPVRGDGFIDFI 572
NK KNR ++P E +RV L P+ G D+I
Sbjct: 350 NKEKNRNSSVVPSERARVGLAPLPGMKGTDYI 381
Score = 438 bits (1129), Expect = e-137
Identities = 95/409 (23%), Positives = 164/409 (40%), Gaps = 73/409 (17%)
Query: 662 DGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVIDLFQTVR 721
+ F+ + + + GP+ VHCSAGVGRTG +I + +L++++ + +++ ++
Sbjct: 211 LPVLTFVRRSSA--ARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLK 268
Query: 722 ILRTQRPAMVQTES---------------------------------------------- 735
+RTQR +VQTE
Sbjct: 269 HIRTQRNYLVQTEEQYIFIHDALLEAILGKETEVSSNQLHSYVNSILIPGVGGKTRLEKQ 328
Query: 736 IEPGQQFTWDHSSM-----EMNKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDG 790
+ Q + E NK KNR ++V+ + +RV L+ + G+ G+DYINA+Y G
Sbjct: 329 FKLVTQCNAKYVECFSAQKECNKEKNRNSSVVPSERARVGLAPLPGMKGTDYINASYIMG 388
Query: 791 YRKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG-TETY 849
Y + N ++ TQ PL T DFWRM+W+ + IVM+ + + YWPSR +
Sbjct: 389 YYRSNEFIITQHPLPHTTKDFWRMIWDHNAQIIVMLPDNQSLAEDEF-VYWPSREESMNC 447
Query: 850 GHITVTLQDVQELAS-----YCIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFL 904
TVTL L I F++ D E++ Q WP+ P +
Sbjct: 448 EAFTVTLISKDRLCLSNEEQIIIHDFILEATQDDYVLEVRHFQCPKWPNPDAP--ISSTF 505
Query: 905 LFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDI 964
+ ++ + GP IVH G G + + ++++++ VD+
Sbjct: 506 ELINVIKEEALTRD-----------GPTIVHDEYGAVSAGMLCALTTLSQQLENENAVDV 554
Query: 965 YGHVTCLRAQRNYMVQTEDQYMFIHDALLEAVLCGNTEIPASSQMITRK 1013
+ + R + +QY FI+ A+L V +
Sbjct: 555 FQVAKMINLMRPGVFTDIEQYQFIYKAMLSLVSTKENGNGPMTVDKNGA 603
Score = 434 bits (1118), Expect = e-135
Identities = 137/315 (43%), Positives = 180/315 (57%), Gaps = 29/315 (9%)
Query: 713 VIDLFQTVRILRTQRPAMVQTE-----SIEPGQQFTWDHSSMEMNKAKNRYANVIAYDHS 767
V + + L + + T +HS+ NK KNRY N++AYDHS
Sbjct: 5 VKQFVKHIGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHS 64
Query: 768 RVILSTVDGI--PGSDYINANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIVM 825
RV L + G SDYINANY DGY K AY+ATQGPL+ T DFWRM+WE + IVM
Sbjct: 65 RVKLRPLPGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVM 124
Query: 826 MTKLEERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYCIRTFMINK----------- 874
+T L E+ R KCDQYWP+ +E YG+I VTL+ + A Y +R F I
Sbjct: 125 ITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTKVKKGQKGNP 184
Query: 875 GADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIV 934
R + Q +T WPD GVPE+ P L F+RR A GP++V
Sbjct: 185 KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPET-----------GPVLV 233
Query: 935 HCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLE 994
HCSAGVGRTG +IVID+M+++IK TV++ G + +R QRNY+VQTE+QY+FIHDALLE
Sbjct: 234 HCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLE 293
Query: 995 AVLCGNTEIPASSQM 1009
A+L TE+ ++
Sbjct: 294 AILGKETEVSSNQLH 308
Score = 364 bits (936), Expect = e-110
Identities = 74/329 (22%), Positives = 137/329 (41%), Gaps = 25/329 (7%)
Query: 192 MVSHPPIPISRLAQHIENLKANDNLKFSQEYESIEPGQQFTWDHSSM-----EMNKAKNR 246
+ + ++L ++ ++ ++ + + Q + E NK KNR
Sbjct: 296 LGKETEVSSNQLHSYVNSILIPGVGGKTRLEKQFKLVTQCNAKYVECFSAQKECNKEKNR 355
Query: 247 YANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDFWRMVWE 306
++V+ + +RV L+ + G+ G+DYINA+Y GY + N ++ TQ PL T DFWRM+W+
Sbjct: 356 NSSVVPSERARVGLAPLPGMKGTDYINASYIMGYYRSNEFIITQHPLPHTTKDFWRMIWD 415
Query: 307 LRSVTIVMMTKLEERTRIKCDQYWPSRG-TETYGHITVTLQDVQELAS-----YCIRTFM 360
+ IVM+ + + YWPSR + TVTL L I F+
Sbjct: 416 HNAQIIVMLPDNQSLAEDEF-VYWPSREESMNCEAFTVTLISKDRLCLSNEEQIIIHDFI 474
Query: 361 INKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGP 420
+ D E++ Q WP+ P + + ++ + GP
Sbjct: 475 LEATQDDYVLEVRHFQCPKWPNPDAP--ISSTFELINVIKEEALTRD-----------GP 521
Query: 421 LIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDA 480
IVH G G + + ++++++ VD++ + R + +QY FI+ A
Sbjct: 522 TIVHDEYGAVSAGMLCALTTLSQQLENENAVDVFQVAKMINLMRPGVFTDIEQYQFIYKA 581
Query: 481 LLEAVLCGNTEIPARSLHVHIQKLMSMEV 509
+L V ++ + L++ E
Sbjct: 582 MLSLVSTKENGNGPMTVDKNGAVLIADES 610
Score = 239 bits (611), Expect = 3e-67
Identities = 64/210 (30%), Positives = 96/210 (45%), Gaps = 39/210 (18%)
Query: 1292 PVRGKTEFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYI 1351
R + +FK ++ A+ SA CNK KNR ++P E +RV L P+ G++G+DYI
Sbjct: 322 KTRLEKQFKLVTQCNAKYVECFSAQKECNKEKNRNSSVVPSERARVGLAPLPGMKGTDYI 381
Query: 1352 NASFIDGYRLRSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR--------- 1402
NAS+I GY + +I TQ PL TT+DFWRM+W+HN+ I+VML + +
Sbjct: 382 NASYIMGYYRSNEFIITQHPLPHTTKDFWRMIWDHNAQIIVMLPDNQSLAEDEFVYWPSR 441
Query: 1403 --------------------------YVLREFKVTDARDATSRTLRQFQLIDWPEQGVPK 1436
++ +F + +D +R FQ WP P
Sbjct: 442 EESMNCEAFTVTLISKDRLCLSNEEQIIIHDFILEATQDDYVLEVRHFQCPKWPNPDAPI 501
Query: 1437 SGDGFIDFIGQVHKTKEQFGQDGPITVHCS 1466
S + I + +E +DGP VH
Sbjct: 502 S--STFELINVIK--EEALTRDGPTIVHDE 527
Score = 213 bits (545), Expect = 1e-58
Identities = 70/215 (32%), Positives = 104/215 (48%), Gaps = 46/215 (21%)
Query: 1296 KTEFKKLSNIRAEPSR-FISASLPCNKHKNRLVHILPVESSRVCLTPVRGIE--GSDYIN 1352
+F+++ A+ + ++ P NKHKNR ++IL + SRV L P+ G + SDYIN
Sbjct: 24 SEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYIN 83
Query: 1353 ASFIDGYRLRSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR---------- 1402
A+++DGY AYIATQGPL T EDFWRM+WE N+ I+VM+T L E GR
Sbjct: 84 ANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTE 143
Query: 1403 --------------------YVLREFKVTDARDAT-----------SRTLRQFQLIDWPE 1431
Y +R F + + + R + Q+ WP+
Sbjct: 144 NSEEYGNIIVTLKSTKIHACYTVRRFSIRNTKVKKGQKGNPKGRQNERVVIQYHYTQWPD 203
Query: 1432 QGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCS 1466
GVP+ + F+ + + + GP+ VHCS
Sbjct: 204 MGVPEYALPVLTFVRRSS--AARMPETGPVLVHCS 236
Score = 196 bits (500), Expect = 1e-52
Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 10/145 (6%)
Query: 1504 EKCHQYWPS-ERSIRYEWFVVEPIAE-----YNMPQYVLREFKVTDARDATSRTLRQFQL 1557
E YWPS E S+ E F V I++ N Q ++ +F + +D +R FQ
Sbjct: 432 EDEFVYWPSREESMNCEAFTVTLISKDRLCLSNEEQIIIHDFILEATQDDYVLEVRHFQC 491
Query: 1558 IDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQ 1617
WP P S + I + + E +DGP VH G G+ L+ + ++++
Sbjct: 492 PKWPNPDAPISS--TFELINVIKE--EALTRDGPTIVHDEYGAVSAGMLCALTTLSQQLE 547
Query: 1618 YEGVIDLFQTVRILRTQRPAMVQTE 1642
E +D+FQ +++ RP +
Sbjct: 548 NENAVDVFQVAKMINLMRPGVFTDI 572
Score = 180 bits (458), Expect = 2e-47
Identities = 44/151 (29%), Positives = 77/151 (50%), Gaps = 13/151 (8%)
Query: 1503 QEKCHQYWPSERSIRYEWFVVEPIAEYNMPQYVLREFKVTDARDAT-----------SRT 1551
+ KC QYWP+E S Y +V + Y +R F + + + R
Sbjct: 133 RRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTKVKKGQKGNPKGRQNERV 192
Query: 1552 LRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSI 1611
+ Q+ WP+ GVP+ + F+ + + + GP+ VHCSAGVGRTG +I +
Sbjct: 193 VIQYHYTQWPDMGVPEYALPVLTFVRRSSA--ARMPETGPVLVHCSAGVGRTGTYIVIDS 250
Query: 1612 VLERMQYEGVIDLFQTVRILRTQRPAMVQTE 1642
+L++++ + +++ ++ +RTQR +VQTE
Sbjct: 251 MLQQIKDKSTVNVLGFLKHIRTQRNYLVQTE 281
Score = 123 bits (310), Expect = 8e-29
Identities = 17/78 (21%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Query: 657 GIPGRDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVIDL 716
P + I + + E +DGP VH G G+ L+ + ++++ E +D+
Sbjct: 498 DAP-ISSTFELINVIKE--EALTRDGPTIVHDEYGAVSAGMLCALTTLSQQLENENAVDV 554
Query: 717 FQTVRILRTQRPAMVQTE 734
FQ +++ RP +
Sbjct: 555 FQVAKMINLMRPGVFTDI 572
Score = 96.7 bits (241), Expect = 3e-20
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 7/81 (8%)
Query: 587 PITVHCSRLAQHIENLKANDNLKFSQEYESI---EPGQQFTWDHSSMEMNKAKNRYANVI 643
I V + +HI L +N+ FS+++E + T +HS+ NK KNRY N++
Sbjct: 2 AIPV--KQFVKHIGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINIL 59
Query: 644 AYDHSRVILSTVDGI--PGRD 662
AYDHSRV L + G D
Sbjct: 60 AYDHSRVKLRPLPGKDSKHSD 80
Score = 71.7 bits (176), Expect = 1e-12
Identities = 15/72 (20%), Positives = 20/72 (27%), Gaps = 30/72 (41%)
Query: 1729 GPLIVHCSAGVGRTGCFIVIDA------------------------------KEQYQFCY 1758
GP IVH G G + EQYQF Y
Sbjct: 520 GPTIVHDEYGAVSAGMLCALTTLSQQLENENAVDVFQVAKMINLMRPGVFTDIEQYQFIY 579
Query: 1759 HAALEYLGSFDH 1770
A L + + ++
Sbjct: 580 KAMLSLVSTKEN 591
Score = 68.6 bits (168), Expect = 1e-11
Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 30/66 (45%)
Query: 1729 GPLIVHCSAGVGRTGCFIVIDA------------------------------KEQYQFCY 1758
GP++VHCSAGVGRTG +IVID+ +EQY F +
Sbjct: 229 GPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIH 288
Query: 1759 HAALEY 1764
A LE
Sbjct: 289 DALLEA 294
Score = 58.6 bits (142), Expect = 1e-08
Identities = 17/93 (18%), Positives = 38/93 (40%), Gaps = 5/93 (5%)
Query: 575 VHKTKEQFGQDGPITVHCSRLAQHIENLKANDNLKFSQEYESIEPGQQFTWDHSSM---- 630
+H + V ++L ++ ++ ++ + + Q +
Sbjct: 287 IHDALLEAILGKETEVSSNQLHSYVNSILIPGVGGKTRLEKQFKLVTQCNAKYVECFSAQ 346
Query: 631 -EMNKAKNRYANVIAYDHSRVILSTVDGIPGRD 662
E NK KNR ++V+ + +RV L+ + G+ G D
Sbjct: 347 KECNKEKNRNSSVVPSERARVGLAPLPGMKGTD 379
Score = 41.2 bits (97), Expect = 0.003
Identities = 7/28 (25%), Positives = 11/28 (39%), Gaps = 2/28 (7%)
Query: 566 DGFIDFIGQVHKTKEQFGQDGPITVHCS 593
+ I + + E +DGP VH
Sbjct: 502 SSTFELINVIKE--EALTRDGPTIVHDE 527
Score = 34.7 bits (80), Expect = 0.28
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 561 TPVRGDGFIDFIGQVHKTKEQFGQDGPITVHCS 593
P + F+ + + + GP+ VHCS
Sbjct: 206 VPEYALPVLTFVRRSSA--ARMPETGPVLVHCS 236
>1ygr_A CD45 protein tyrosine phosphatase; protein tyrosine phosphatase,
RPTP, LCA, lymphocyte activation, hydrolase; HET: PTR;
2.90A {Homo sapiens} PDB: 1ygu_A*
Length = 610
Score = 523 bits (1349), Expect = e-168
Identities = 143/381 (37%), Positives = 216/381 (56%), Gaps = 16/381 (4%)
Query: 190 PGMVSHPPIPISRLAQHIENLKANDNLKFSQEYESI-EPGQQFTWDHSSMEMNKAKNRYA 248
+++ PI L + + A++ F E++SI +F + N+ KNRY
Sbjct: 2 KQLMNVEPIHADILLETYKRKIADEGRPFLAEFQSIPRVFSKFPIKEARKPFNQNKNRYV 61
Query: 249 NVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELR 308
+++ YD++RV LS ++G GS+YINA+Y DG+++ Y+A QGP ET+ DFWRM+WE +
Sbjct: 62 DILPYDYNRVELSEINGDAGSNYINASYIDGFKEPRKYIAAQGPRDETVDDFWRMIWEQK 121
Query: 309 SVTIVMMTKLEERTRIKCDQYWPS--RGTETYGHITVTLQDVQELASYCIRTFMI-NKGA 365
+ IVM+T+ EE R KC +YWPS GT +G + V + + Y I+ I NK
Sbjct: 122 ATVIVMVTRCEEGNRNKCAEYWPSMEEGTRAFGDVVVKINQHKRCPDYIIQKLNIVNKKE 181
Query: 366 DSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHC 425
+ RE+ +QFT+WPDHGVPE P L RRV A + + GP++VH
Sbjct: 182 KATGREVTHIQFTSWPDHGVPEDPHLLLKLRRRVNAFSNFFS-----------GPIVVHS 230
Query: 426 SAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLEAV 485
SAGVGRTG +I IDAM+E ++ + VD+YG+V LR QR MVQ E QY+ IH AL+E
Sbjct: 231 SAGVGRTGTYIGIDAMLEGLEAENKVDVYGYVVKLRRQRCLMVQVEAQYILIHQALVEYN 290
Query: 486 LCGNTEIPARSLHVHIQKLMSMEVGDTSTGMELEFKKLSNIRAEPSRFISASLPCNKHKN 545
G TE+ LH ++ + + + +E EF++L + R+ ++ I + NK KN
Sbjct: 291 QFGETEVNLSELHPYLHNMKKRDPPSEPSPLEAEFQRLPSYRSWRTQHI-GNQEENKSKN 349
Query: 546 RLVHILPVESSRVCLTPVRGD 566
R +++P + +RV L
Sbjct: 350 RNSNVIPYDYNRVPLKHELEM 370
Score = 444 bits (1143), Expect = e-139
Identities = 120/409 (29%), Positives = 184/409 (44%), Gaps = 74/409 (18%)
Query: 662 DGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVIDLFQTVR 721
+ +V+ F GPI VH SAGVGRTG +I + +LE ++ E +D++ V
Sbjct: 206 HLLLKLRRRVNAFSNFF--SGPIVVHSSAGVGRTGTYIGIDAMLEGLEAENKVDVYGYVV 263
Query: 722 ILRTQRPAMVQTES--------IEPGQQFTWDHSSMEM---------------------- 751
LR QR MVQ E+ + QF ++
Sbjct: 264 KLRRQRCLMVQVEAQYILIHQALVEYNQFGETEVNLSELHPYLHNMKKRDPPSEPSPLEA 323
Query: 752 ---------------------NKAKNRYANVIAYDHSRVILST----------------- 773
NK+KNR +NVI YD++RV L
Sbjct: 324 EFQRLPSYRSWRTQHIGNQEENKSKNRNSNVIPYDYNRVPLKHELEMSKESEHDSDESSD 383
Query: 774 --VDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEE 831
D S YINA++ Y K +A QGPL+ET+GDFW+M+++ + IVM+T+L+
Sbjct: 384 DDSDSEEPSKYINASFIMSYWKPEVMIAAQGPLKETIGDFWQMIFQRKVKVIVMLTELKH 443
Query: 832 RTRIKCDQYWPSRGTETYGHITVTLQDVQELASYCIRTFMINKGADSERREIKQLQFTAW 891
+ C QYW G +TYG I V L+D + ++Y +R F + + R + Q Q+T W
Sbjct: 444 GDQEICAQYWGE-GKQTYGDIEVDLKDTDKSSTYTLRVFELRHSKRKDSRTVYQYQYTNW 502
Query: 892 PDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDA 951
+P P + ++ V+ P NS E + + PL++HC G +TG F +
Sbjct: 503 SVEQLPAEPKELISMIQVVKQKLPQKNSSEGNKHHKS-TPLLIHCRDGSQQTGIFCALLN 561
Query: 952 MIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLEAVLCGN 1000
++E + ++ VDI+ V LR R MV T +QY F++D + N
Sbjct: 562 LLESAETEEVVDIFQVVKALRKARLGMVSTFEQYQFLYDVIASTYPAQN 610
Score = 437 bits (1126), Expect = e-136
Identities = 125/327 (38%), Positives = 177/327 (54%), Gaps = 17/327 (5%)
Query: 715 DLFQTVRILRTQRPAMVQTE--SI-EPGQQFTWDHSSMEMNKAKNRYANVIAYDHSRVIL 771
L +T + E SI +F + N+ KNRY +++ YD++RV L
Sbjct: 14 ILLETYKRKIADEGRPFLAEFQSIPRVFSKFPIKEARKPFNQNKNRYVDILPYDYNRVEL 73
Query: 772 STVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEE 831
S ++G GS+YINA+Y DG+++ Y+A QGP ET+ DFWRM+WE ++ IVM+T+ EE
Sbjct: 74 SEINGDAGSNYINASYIDGFKEPRKYIAAQGPRDETVDDFWRMIWEQKATVIVMVTRCEE 133
Query: 832 RTRIKCDQYWPS--RGTETYGHITVTLQDVQELASYCIRTFMI-NKGADSERREIKQLQF 888
R KC +YWPS GT +G + V + + Y I+ I NK + RE+ +QF
Sbjct: 134 GNRNKCAEYWPSMEEGTRAFGDVVVKINQHKRCPDYIIQKLNIVNKKEKATGREVTHIQF 193
Query: 889 TAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIV 948
T+WPDHGVPE P L RRV A + + GP++VH SAGVGRTG +I
Sbjct: 194 TSWPDHGVPEDPHLLLKLRRRVNAFSNFFS-----------GPIVVHSSAGVGRTGTYIG 242
Query: 949 IDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLEAVLCGNTEIPASSQ 1008
IDAM+E ++ + VD+YG+V LR QR MVQ E QY+ IH AL+E G TE+ S
Sbjct: 243 IDAMLEGLEAENKVDVYGYVVKLRRQRCLMVQVEAQYILIHQALVEYNQFGETEVNLSEL 302
Query: 1009 MITRKDDPTVSLQDPYIAAKFSQRNIP 1035
+ + + +P
Sbjct: 303 HPYLHNMKKRDPPSEPSPLEAEFQRLP 329
Score = 363 bits (933), Expect = e-110
Identities = 91/281 (32%), Positives = 141/281 (50%), Gaps = 21/281 (7%)
Query: 228 GQQFTWDHSSMEMNKAKNRYANVIAYDHSRVILST-------------------VDGIPG 268
T + E NK+KNR +NVI YD++RV L D
Sbjct: 332 RSWRTQHIGNQEENKSKNRNSNVIPYDYNRVPLKHELEMSKESEHDSDESSDDDSDSEEP 391
Query: 269 SDYINANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQ 328
S YINA++ Y K +A QGPL+ET+GDFW+M+++ + IVM+T+L+ + C Q
Sbjct: 392 SKYINASFIMSYWKPEVMIAAQGPLKETIGDFWQMIFQRKVKVIVMLTELKHGDQEICAQ 451
Query: 329 YWPSRGTETYGHITVTLQDVQELASYCIRTFMINKGADSERREIKQLQFTAWPDHGVPEH 388
YW G +TYG I V L+D + ++Y +R F + + R + Q Q+T W +P
Sbjct: 452 YWGE-GKQTYGDIEVDLKDTDKSSTYTLRVFELRHSKRKDSRTVYQYQYTNWSVEQLPAE 510
Query: 389 PAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHD 448
P + ++ V+ P NS E + + PL++HC G +TG F + ++E + +
Sbjct: 511 PKELISMIQVVKQKLPQKNSSEGNKHHKS-TPLLIHCRDGSQQTGIFCALLNLLESAETE 569
Query: 449 KTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLEAVLCGN 489
+ VDI+ V LR R MV T +QY F++D + N
Sbjct: 570 EVVDIFQVVKALRKARLGMVSTFEQYQFLYDVIASTYPAQN 610
Score = 222 bits (567), Expect = 1e-61
Identities = 64/204 (31%), Positives = 101/204 (49%), Gaps = 36/204 (17%)
Query: 1296 KTEFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASF 1355
EF+ + + ++ A P N++KNR V ILP + +RV L+ + G GS+YINAS+
Sbjct: 31 LAEFQSIPRVFSKFP-IKEARKPFNQNKNRYVDILPYDYNRVELSEINGDAGSNYINASY 89
Query: 1356 IDGYRLRSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------- 1402
IDG++ YIA QGP +T +DFWRM+WE +T++VM+T+ +E R
Sbjct: 90 IDGFKEPRKYIAAQGPRDETVDDFWRMIWEQKATVIVMVTRCEEGNRNKCAEYWPSMEEG 149
Query: 1403 -------------------YVLREFKVTDAR-DATSRTLRQFQLIDWPEQGVPKSGDGFI 1442
Y++++ + + + AT R + Q WP+ GVP+ +
Sbjct: 150 TRAFGDVVVKINQHKRCPDYIIQKLNIVNKKEKATGREVTHIQFTSWPDHGVPEDPHLLL 209
Query: 1443 DFIGQVHKTKEQFGQDGPITVHCS 1466
+V+ F GPI VH S
Sbjct: 210 KLRRRVNAFSNFF--SGPIVVHSS 231
Score = 220 bits (563), Expect = 5e-61
Identities = 64/276 (23%), Positives = 107/276 (38%), Gaps = 68/276 (24%)
Query: 1228 HVHIQKLMSMEVGDTSTGMELEFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSR 1287
H ++ + + + +E EF++L + R+ ++ I + NK KNR +++P + +R
Sbjct: 303 HPYLHNMKKRDPPSEPSPLEAEFQRLPSYRSWRTQHI-GNQEENKSKNRNSNVIPYDYNR 361
Query: 1288 VCLTPVRGKTEFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLTPVRGIEG 1347
V L KH+ + +S E
Sbjct: 362 VPL------------------------------KHELEMSKESEHDSDESSDDDSDSEEP 391
Query: 1348 SDYINASFIDGYRLRSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR----- 1402
S YINASFI Y IA QGPL +T DFW+M+++ ++VMLT+LK +
Sbjct: 392 SKYINASFIMSYWKPEVMIAAQGPLKETIGDFWQMIFQRKVKVIVMLTELKHGDQEICAQ 451
Query: 1403 ------------------------YVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSG 1438
Y LR F++ ++ SRT+ Q+Q +W + +P
Sbjct: 452 YWGEGKQTYGDIEVDLKDTDKSSTYTLRVFELRHSKRKDSRTVYQYQYTNWSVEQLPAEP 511
Query: 1439 DGFIDFIGQVHKTKEQ--------FGQDGPITVHCS 1466
I I V + Q + P+ +HC
Sbjct: 512 KELISMIQVVKQKLPQKNSSEGNKHHKSTPLLIHCR 547
Score = 200 bits (511), Expect = 2e-54
Identities = 46/148 (31%), Positives = 67/148 (45%), Gaps = 9/148 (6%)
Query: 1503 QEKCHQYWPSERSIRYEWFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQLIDWPE 1562
QE C QYW E Y V+ Y LR F++ ++ SRT+ Q+Q +W
Sbjct: 446 QEICAQYWG-EGKQTYGDIEVDLKDTDKSSTYTLRVFELRHSKRKDSRTVYQYQYTNWSV 504
Query: 1563 QGVPKSGDGFIDFIGQVHKTKEQ--------FGQDGPITVHCSAGVGRTGVFITLSIVLE 1614
+ +P I I V + Q + P+ +HC G +TG+F L +LE
Sbjct: 505 EQLPAEPKELISMIQVVKQKLPQKNSSEGNKHHKSTPLLIHCRDGSQQTGIFCALLNLLE 564
Query: 1615 RMQYEGVIDLFQTVRILRTQRPAMVQTE 1642
+ E V+D+FQ V+ LR R MV T
Sbjct: 565 SAETEEVVDIFQVVKALRKARLGMVSTF 592
Score = 179 bits (457), Expect = 2e-47
Identities = 49/143 (34%), Positives = 75/143 (52%), Gaps = 5/143 (3%)
Query: 1503 QEKCHQYWPS--ERSIRYEWFVVEPIAEYNMPQYVLREFKVTDAR-DATSRTLRQFQLID 1559
+ KC +YWPS E + + VV+ P Y++++ + + + AT R + Q
Sbjct: 136 RNKCAEYWPSMEEGTRAFGDVVVKINQHKRCPDYIIQKLNIVNKKEKATGREVTHIQFTS 195
Query: 1560 WPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYE 1619
WP+ GVP+ + +V+ F GPI VH SAGVGRTG +I + +LE ++ E
Sbjct: 196 WPDHGVPEDPHLLLKLRRRVNAFSNFF--SGPIVVHSSAGVGRTGTYIGIDAMLEGLEAE 253
Query: 1620 GVIDLFQTVRILRTQRPAMVQTE 1642
+D++ V LR QR MVQ E
Sbjct: 254 NKVDVYGYVVKLRRQRCLMVQVE 276
Score = 100 bits (251), Expect = 1e-21
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 587 PITVHCSRLAQHIENLKANDNLKFSQEYESI-EPGQQFTWDHSSMEMNKAKNRYANVIAY 645
PI L + + A++ F E++SI +F + N+ KNRY +++ Y
Sbjct: 9 PIHAD--ILLETYKRKIADEGRPFLAEFQSIPRVFSKFPIKEARKPFNQNKNRYVDILPY 66
Query: 646 DHSRVILSTVDGIPGRD 662
D++RV LS ++G G +
Sbjct: 67 DYNRVELSEINGDAGSN 83
Score = 68.2 bits (167), Expect = 2e-11
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Query: 483 EAVLCGNTEIPARSLHVHIQKLMSMEVGDTSTGMELEFKKLSNIRAEPSRFISASLPCNK 542
E L I A L ++ ++ D EF+ + + ++ A P N+
Sbjct: 1 EKQLMNVEPIHADILLETYKRKIA----DEGRPFLAEFQSIPRVFSKFP-IKEARKPFNQ 55
Query: 543 HKNRLVHILPVESSRVCLTPVRGDGFIDFI 572
+KNR V ILP + +RV L+ + GD ++I
Sbjct: 56 NKNRYVDILPYDYNRVELSEINGDAGSNYI 85
Score = 66.3 bits (162), Expect = 5e-11
Identities = 14/69 (20%), Positives = 19/69 (27%), Gaps = 30/69 (43%)
Query: 1729 GPLIVHCSAGVGRTGCFIVIDA------------------------------KEQYQFCY 1758
PL++HC G +TG F + EQYQF Y
Sbjct: 540 TPLLIHCRDGSQQTGIFCALLNLLESAETEEVVDIFQVVKALRKARLGMVSTFEQYQFLY 599
Query: 1759 HAALEYLGS 1767
+
Sbjct: 600 DVIASTYPA 608
Score = 65.5 bits (160), Expect = 9e-11
Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 30/62 (48%)
Query: 1729 GPLIVHCSAGVGRTGCFIVIDA------------------------------KEQYQFCY 1758
GP++VH SAGVGRTG +I IDA + QY +
Sbjct: 224 GPIVVHSSAGVGRTGTYIGIDAMLEGLEAENKVDVYGYVVKLRRQRCLMVQVEAQYILIH 283
Query: 1759 HA 1760
A
Sbjct: 284 QA 285
Score = 50.9 bits (122), Expect = 4e-06
Identities = 17/108 (15%), Positives = 37/108 (34%), Gaps = 1/108 (0%)
Query: 575 VHKTKEQFGQDGPITVHCSRLAQHIENLKANDNLKFSQEYESIEP-GQQFTWDHSSMEMN 633
+ + + + ++ L + ++ E++ + T + E N
Sbjct: 286 LVEYNQFGETEVNLSELHPYLHNMKKRDPPSEPSPLEAEFQRLPSYRSWRTQHIGNQEEN 345
Query: 634 KAKNRYANVIAYDHSRVILSTVDGIPGRDGFIDFIGQVHKTKEQFGQD 681
K+KNR +NVI YD++RV L + + +
Sbjct: 346 KSKNRNSNVIPYDYNRVPLKHELEMSKESEHDSDESSDDDSDSEEPSK 393
Score = 38.2 bits (89), Expect = 0.027
Identities = 8/41 (19%), Positives = 12/41 (29%), Gaps = 8/41 (19%)
Query: 561 TPVRGDGFIDFIGQVHKTKEQ--------FGQDGPITVHCS 593
P I I V + Q + P+ +HC
Sbjct: 507 LPAEPKELISMIQVVKQKLPQKNSSEGNKHHKSTPLLIHCR 547
Score = 34.3 bits (79), Expect = 0.41
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 2/33 (6%)
Query: 561 TPVRGDGFIDFIGQVHKTKEQFGQDGPITVHCS 593
P + +V+ F GPI VH S
Sbjct: 201 VPEDPHLLLKLRRRVNAFSNFF--SGPIVVHSS 231
>1yfo_A D1, receptor protein tyrosine phosphatase alpha; hydrolase, signal
transduction, glycoprotein, phosphorylation, signal;
2.25A {Mus musculus} SCOP: c.45.1.2
Length = 302
Score = 506 bits (1305), Expect = e-166
Identities = 142/306 (46%), Positives = 201/306 (65%), Gaps = 16/306 (5%)
Query: 194 SHPPIPISRLAQHIENLKANDNLKFSQEYESIEPGQ-QFTWDHSSMEMNKAKNRYANVIA 252
+PP+P+ +L + I A+DN F +E+ ++ Q T + +S E NK KNRY N++
Sbjct: 7 KYPPLPVDKLEEEINRRMADDNKLFREEFNALPACPIQATCEAASKEENKEKNRYVNILP 66
Query: 253 YDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTI 312
YDHSRV L+ V+G+P SDYINA++ +GY++ N ++A QGP +ET+ DFWRM+WE + TI
Sbjct: 67 YDHSRVHLTPVEGVPDSDYINASFINGYQEKNKFIAAQGPKEETVNDFWRMIWEQNTATI 126
Query: 313 VMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYCIRTFMINKGAD----SE 368
VM+T L+ER KC QYWP +G TYG++ V+++DV L Y +R F I + D
Sbjct: 127 VMVTNLKERKECKCAQYWPDQGCWTYGNVRVSVEDVTVLVDYTVRKFCIQQVGDVTNRKP 186
Query: 369 RREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAG 428
+R I Q FT+WPD GVP P L FL++V+A NP G ++VHCSAG
Sbjct: 187 QRLITQFHFTSWPDFGVPFTPIGMLKFLKKVKACNPQYA-----------GAIVVHCSAG 235
Query: 429 VGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLEAVLCG 488
VGRTG F+VIDAM++ + ++ VD+YG V+ +RAQR MVQT+ QY+FI+ ALLE L G
Sbjct: 236 VGRTGTFVVIDAMLDMMHSERKVDVYGFVSRIRAQRCQMVQTDMQYVFIYQALLEHYLYG 295
Query: 489 NTEIPA 494
+TE+
Sbjct: 296 DTELEV 301
Score = 465 bits (1200), Expect = e-151
Identities = 135/301 (44%), Positives = 191/301 (63%), Gaps = 18/301 (5%)
Query: 713 VIDLFQTVRILRTQRPAMVQTE--SIEPGQ-QFTWDHSSMEMNKAKNRYANVIAYDHSRV 769
V L + + + + E ++ Q T + +S E NK KNRY N++ YDHSRV
Sbjct: 13 VDKLEEEINRRMADDNKLFREEFNALPACPIQATCEAASKEENKEKNRYVNILPYDHSRV 72
Query: 770 ILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKL 829
L+ V+G+P SDYINA++ +GY++ N ++A QGP +ET+ DFWRM+WE + TIVM+T L
Sbjct: 73 HLTPVEGVPDSDYINASFINGYQEKNKFIAAQGPKEETVNDFWRMIWEQNTATIVMVTNL 132
Query: 830 EERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYCIRTFMINKGAD----SERREIKQ 885
+ER KC QYWP +G TYG++ V+++DV L Y +R F I + D +R I Q
Sbjct: 133 KERKECKCAQYWPDQGCWTYGNVRVSVEDVTVLVDYTVRKFCIQQVGDVTNRKPQRLITQ 192
Query: 886 LQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGC 945
FT+WPD GVP P L FL++V+A NP G ++VHCSAGVGRTG
Sbjct: 193 FHFTSWPDFGVPFTPIGMLKFLKKVKACNPQYA-----------GAIVVHCSAGVGRTGT 241
Query: 946 FIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLEAVLCGNTEIPA 1005
F+VIDAM++ + ++ VD+YG V+ +RAQR MVQT+ QY+FI+ ALLE L G+TE+
Sbjct: 242 FVVIDAMLDMMHSERKVDVYGFVSRIRAQRCQMVQTDMQYVFIYQALLEHYLYGDTELEV 301
Query: 1006 S 1006
+
Sbjct: 302 T 302
Score = 227 bits (582), Expect = 6e-67
Identities = 76/205 (37%), Positives = 103/205 (50%), Gaps = 37/205 (18%)
Query: 1296 KTEFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASF 1355
+ EF L + + +AS NK KNR V+ILP + SRV LTPV G+ SDYINASF
Sbjct: 32 REEFNALPACPIQAT-CEAASKEENKEKNRYVNILPYDHSRVHLTPVEGVPDSDYINASF 90
Query: 1356 IDGYRLRSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------- 1402
I+GY+ ++ +IA QGP +T DFWRM+WE N+ +VM+T LKE
Sbjct: 91 INGYQEKNKFIAAQGPKEETVNDFWRMIWEQNTATIVMVTNLKERKECKCAQYWPDQGCW 150
Query: 1403 -----------------YVLREFKVTDARDAT----SRTLRQFQLIDWPEQGVPKSGDGF 1441
Y +R+F + D T R + QF WP+ GVP + G
Sbjct: 151 TYGNVRVSVEDVTVLVDYTVRKFCIQQVGDVTNRKPQRLITQFHFTSWPDFGVPFTPIGM 210
Query: 1442 IDFIGQVHKTKEQFGQDGPITVHCS 1466
+ F+ +V Q+ G I VHCS
Sbjct: 211 LKFLKKVKACNPQY--AGAIVVHCS 233
Score = 189 bits (482), Expect = 1e-53
Identities = 51/144 (35%), Positives = 73/144 (50%), Gaps = 6/144 (4%)
Query: 1503 QEKCHQYWPSERSIRYEWFVVEPIAEYNMPQYVLREFKVTDARDAT----SRTLRQFQLI 1558
+ KC QYWP + Y V + Y +R+F + D T R + QF
Sbjct: 137 ECKCAQYWPDQGCWTYGNVRVSVEDVTVLVDYTVRKFCIQQVGDVTNRKPQRLITQFHFT 196
Query: 1559 DWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQY 1618
WP+ GVP + G + F+ +V Q+ G I VHCSAGVGRTG F+ + +L+ M
Sbjct: 197 SWPDFGVPFTPIGMLKFLKKVKACNPQY--AGAIVVHCSAGVGRTGTFVVIDAMLDMMHS 254
Query: 1619 EGVIDLFQTVRILRTQRPAMVQTE 1642
E +D++ V +R QR MVQT+
Sbjct: 255 ERKVDVYGFVSRIRAQRCQMVQTD 278
Score = 113 bits (284), Expect = 3e-27
Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
Query: 657 GIPGR-DGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVID 715
G+P G + F+ +V Q+ G I VHCSAGVGRTG F+ + +L+ M E +D
Sbjct: 202 GVPFTPIGMLKFLKKVKACNPQY--AGAIVVHCSAGVGRTGTFVVIDAMLDMMHSERKVD 259
Query: 716 LFQTVRILRTQRPAMVQTE 734
++ V +R QR MVQT+
Sbjct: 260 VYGFVSRIRAQRCQMVQTD 278
Score = 103 bits (259), Expect = 5e-24
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 587 PITVHCSRLAQHIENLKANDNLKFSQEYESIEPGQ-QFTWDHSSMEMNKAKNRYANVIAY 645
P+ V +L + I A+DN F +E+ ++ Q T + +S E NK KNRY N++ Y
Sbjct: 10 PLPV--DKLEEEINRRMADDNKLFREEFNALPACPIQATCEAASKEENKEKNRYVNILPY 67
Query: 646 DHSRVILSTVDGIPGRD 662
DHSRV L+ V+G+P D
Sbjct: 68 DHSRVHLTPVEGVPDSD 84
Score = 71.9 bits (177), Expect = 2e-13
Identities = 24/67 (35%), Positives = 28/67 (41%), Gaps = 30/67 (44%)
Query: 1729 GPLIVHCSAGVGRTGCFIVIDA------------------------------KEQYQFCY 1758
G ++VHCSAGVGRTG F+VIDA QY F Y
Sbjct: 226 GAIVVHCSAGVGRTGTFVVIDAMLDMMHSERKVDVYGFVSRIRAQRCQMVQTDMQYVFIY 285
Query: 1759 HAALEYL 1765
A LE+
Sbjct: 286 QALLEHY 292
Score = 63.8 bits (156), Expect = 1e-10
Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 492 IPARSLHVHIQKLMSMEVGDTSTGMELEFKKLSNIRAEPSRFISASLPCNKHKNRLVHIL 551
+P L I + M+ D + EF L + + +AS NK KNR V+IL
Sbjct: 11 LPVDKLEEEINRRMA----DDNKLFREEFNALPACPIQAT-CEAASKEENKEKNRYVNIL 65
Query: 552 PVESSRVCLTPVRGDGFIDFI 572
P + SRV LTPV G D+I
Sbjct: 66 PYDHSRVHLTPVEGVPDSDYI 86
Score = 36.4 bits (85), Expect = 0.067
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 561 TPVRGDGFIDFIGQVHKTKEQFGQDGPITVHCS 593
P G + F+ +V Q+ G I VHCS
Sbjct: 203 VPFTPIGMLKFLKKVKACNPQY--AGAIVVHCS 233
>2ooq_A Receptor-type tyrosine-protein phosphatase T; protein tyrosine
phosphatase, human, structural GE structural genomics
consortium, SGC, hydrolase; HET: B3P; 1.80A {Homo
sapiens} PDB: 1rpm_A 2c7s_A
Length = 286
Score = 500 bits (1291), Expect = e-165
Identities = 150/296 (50%), Positives = 197/296 (66%), Gaps = 12/296 (4%)
Query: 197 PIPISRLAQHIENLKANDNLKFSQEYESIEPGQQFTWDHSSMEMNKAKNRYANVIAYDHS 256
I ++ L QHI +K F +EYE++ GQ +WD + + N+ KNRY N+I+YDHS
Sbjct: 3 AIRVADLLQHITQMKRGQGYGFKEEYEALPEGQTASWDTAKEDENRNKNRYGNIISYDHS 62
Query: 257 RVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMT 316
RV L +DG P SDYINANY DGY + Y+ATQGP+QET+ DFWRM+W+ S +IVM+T
Sbjct: 63 RVRLLVLDGDPHSDYINANYIDGYHRPRHYIATQGPMQETVKDFWRMIWQENSASIVMVT 122
Query: 317 KLEERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYCIRTFMINKGADSERREIKQLQ 376
L E R+KC +YWP TE YG I VTL + + LA Y IRTF + K E RE++
Sbjct: 123 NLVEVGRVKCVRYWPD-DTEVYGDIKVTLIETEPLAEYVIRTFTVQKKGYHEIRELRLFH 181
Query: 377 FTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFI 436
FT+WPDHGVP + L F+R+V+ +NP GP++VHCSAG GRTGCFI
Sbjct: 182 FTSWPDHGVPCYATGLLGFVRQVKFLNPPEA-----------GPIVVHCSAGAGRTGCFI 230
Query: 437 VIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLEAVLCGNTEI 492
ID M++ +++ VDI+ V LRAQR +VQTE+QY+F+HDA+LEA LCGNT I
Sbjct: 231 AIDTMLDMAENEGVVDIFNCVRELRAQRVNLVQTEEQYVFVHDAILEACLCGNTAI 286
Score = 465 bits (1198), Expect = e-151
Identities = 145/293 (49%), Positives = 193/293 (65%), Gaps = 14/293 (4%)
Query: 713 VIDLFQTVRILRTQRPAMVQTE--SIEPGQQFTWDHSSMEMNKAKNRYANVIAYDHSRVI 770
V DL Q + ++ + + E ++ GQ +WD + + N+ KNRY N+I+YDHSRV
Sbjct: 6 VADLLQHITQMKRGQGYGFKEEYEALPEGQTASWDTAKEDENRNKNRYGNIISYDHSRVR 65
Query: 771 LSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLE 830
L +DG P SDYINANY DGY + Y+ATQGP+QET+ DFWRM+W+ S +IVM+T L
Sbjct: 66 LLVLDGDPHSDYINANYIDGYHRPRHYIATQGPMQETVKDFWRMIWQENSASIVMVTNLV 125
Query: 831 ERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYCIRTFMINKGADSERREIKQLQFTA 890
E R+KC +YWP TE YG I VTL + + LA Y IRTF + K E RE++ FT+
Sbjct: 126 EVGRVKCVRYWPD-DTEVYGDIKVTLIETEPLAEYVIRTFTVQKKGYHEIRELRLFHFTS 184
Query: 891 WPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVID 950
WPDHGVP + L F+R+V+ +NP GP++VHCSAG GRTGCFI ID
Sbjct: 185 WPDHGVPCYATGLLGFVRQVKFLNPPEA-----------GPIVVHCSAGAGRTGCFIAID 233
Query: 951 AMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLEAVLCGNTEI 1003
M++ +++ VDI+ V LRAQR +VQTE+QY+F+HDA+LEA LCGNT I
Sbjct: 234 TMLDMAENEGVVDIFNCVRELRAQRVNLVQTEEQYVFVHDAILEACLCGNTAI 286
Score = 230 bits (590), Expect = 4e-68
Identities = 72/200 (36%), Positives = 98/200 (49%), Gaps = 33/200 (16%)
Query: 1296 KTEFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASF 1355
K E++ L + + +A N++KNR +I+ + SRV L + G SDYINA++
Sbjct: 25 KEEYEALPEGQTAS--WDTAKEDENRNKNRYGNIISYDHSRVRLLVLDGDPHSDYINANY 82
Query: 1356 IDGYRLRSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------- 1402
IDGY YIATQGP+ +T +DFWRM+W+ NS +VM+T L E+GR
Sbjct: 83 IDGYHRPRHYIATQGPMQETVKDFWRMIWQENSASIVMVTNLVEVGRVKCVRYWPDDTEV 142
Query: 1403 ----------------YVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFIG 1446
YV+R F V R LR F WP+ GVP G + F+
Sbjct: 143 YGDIKVTLIETEPLAEYVIRTFTVQKKGYHEIRELRLFHFTSWPDHGVPCYATGLLGFVR 202
Query: 1447 QVHKTKEQFGQDGPITVHCS 1466
QV + GPI VHCS
Sbjct: 203 QVKFLNPP--EAGPIVVHCS 220
Score = 188 bits (481), Expect = 1e-53
Identities = 57/140 (40%), Positives = 75/140 (53%), Gaps = 3/140 (2%)
Query: 1503 QEKCHQYWPSERSIRYEWFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQLIDWPE 1562
+ KC +YWP + + Y V I + +YV+R F V R LR F WP+
Sbjct: 129 RVKCVRYWPDD-TEVYGDIKVTLIETEPLAEYVIRTFTVQKKGYHEIRELRLFHFTSWPD 187
Query: 1563 QGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVI 1622
GVP G + F+ QV + GPI VHCSAG GRTG FI + +L+ + EGV+
Sbjct: 188 HGVPCYATGLLGFVRQVKFLNPP--EAGPIVVHCSAGAGRTGCFIAIDTMLDMAENEGVV 245
Query: 1623 DLFQTVRILRTQRPAMVQTE 1642
D+F VR LR QR +VQTE
Sbjct: 246 DIFNCVRELRAQRVNLVQTE 265
Score = 113 bits (284), Expect = 2e-27
Identities = 37/79 (46%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 657 GIPGR-DGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVID 715
G+P G + F+ QV + GPI VHCSAG GRTG FI + +L+ + EGV+D
Sbjct: 189 GVPCYATGLLGFVRQVKFLNPP--EAGPIVVHCSAGAGRTGCFIAIDTMLDMAENEGVVD 246
Query: 716 LFQTVRILRTQRPAMVQTE 734
+F VR LR QR +VQTE
Sbjct: 247 IFNCVRELRAQRVNLVQTE 265
Score = 106 bits (267), Expect = 3e-25
Identities = 33/76 (43%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 587 PITVHCSRLAQHIENLKANDNLKFSQEYESIEPGQQFTWDHSSMEMNKAKNRYANVIAYD 646
I V + L QHI +K F +EYE++ GQ +WD + + N+ KNRY N+I+YD
Sbjct: 3 AIRV--ADLLQHITQMKRGQGYGFKEEYEALPEGQTASWDTAKEDENRNKNRYGNIISYD 60
Query: 647 HSRVILSTVDGIPGRD 662
HSRV L +DG P D
Sbjct: 61 HSRVRLLVLDGDPHSD 76
Score = 72.2 bits (178), Expect = 1e-13
Identities = 24/67 (35%), Positives = 28/67 (41%), Gaps = 30/67 (44%)
Query: 1729 GPLIVHCSAGVGRTGCFIVIDA------------------------------KEQYQFCY 1758
GP++VHCSAG GRTGCFI ID +EQY F +
Sbjct: 213 GPIVVHCSAGAGRTGCFIAIDTMLDMAENEGVVDIFNCVRELRAQRVNLVQTEEQYVFVH 272
Query: 1759 HAALEYL 1765
A LE
Sbjct: 273 DAILEAC 279
Score = 63.0 bits (154), Expect = 1e-10
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 492 IPARSLHVHIQKLMSMEVGDTSTGMELEFKKLSNIRAEPSRFISASLPCNKHKNRLVHIL 551
I L HI ++ G + E++ L + + +A N++KNR +I+
Sbjct: 4 IRVADLLQHITQMKR----GQGYGFKEEYEALPEGQTAS--WDTAKEDENRNKNRYGNII 57
Query: 552 PVESSRVCLTPVRGDGFIDFI 572
+ SRV L + GD D+I
Sbjct: 58 SYDHSRVRLLVLDGDPHSDYI 78
Score = 36.4 bits (85), Expect = 0.069
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 561 TPVRGDGFIDFIGQVHKTKEQFGQDGPITVHCS 593
P G + F+ QV + GPI VHCS
Sbjct: 190 VPCYATGLLGFVRQVKFLNPP--EAGPIVVHCS 220
>2gjt_A Receptor-type tyrosine-protein phosphatase PTPro; tyrosine
phosphatase, glepp1, PTPU2, structural genom structural
genomics consortium, SGC; 2.15A {Homo sapiens} PDB:
2g59_A 2pi7_A
Length = 295
Score = 491 bits (1267), Expect = e-161
Identities = 115/308 (37%), Positives = 171/308 (55%), Gaps = 17/308 (5%)
Query: 194 SHPPIPISRLAQHIENLKANDNLKFSQEYESI-EPGQQFTWDHSSMEMNKAKNRYANVIA 252
S P+ + +I+++ + + KFS ++E + G + + +N+ KNRY N++
Sbjct: 1 SMNPVQLDDFDAYIKDMAKDSDYKFSLQFEELKLIGLDIPHFAADLPLNRCKNRYTNILP 60
Query: 253 YDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTI 312
YD SRV L +++ G+DYINANY GY Y+ATQGPL ET DFW+MV + +S I
Sbjct: 61 YDFSRVRLVSMNEEEGADYINANYIPGYNSPQEYIATQGPLPETRNDFWKMVLQQKSQII 120
Query: 313 VMMTKLEERTRIKCDQYWP-SRGTETYGHITVTLQDVQELASYCIRTFMINKGADSERRE 371
VM+T+ E+ R+KCD YWP + YG ITV + +E + R F IN E ++
Sbjct: 121 VMLTQCNEKRRVKCDHYWPFTEEPIAYGDITVEMISEEEQDDWACRHFRINYA--DEMQD 178
Query: 372 IKQLQFTAWPDHGVP--EHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGV 429
+ +TAWPDHGVP L F+ VR + GP+I+HCSAGV
Sbjct: 179 VMHFNYTAWPDHGVPTANAAESILQFVHMVRQQATKSK-----------GPMIIHCSAGV 227
Query: 430 GRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLEAVLCGN 489
GRTG FI +D +++ I+ + VDI G V+ +R+ R MVQTE+QY+FIH + +
Sbjct: 228 GRTGTFIALDRLLQHIRDHEFVDILGLVSEMRSYRMSMVQTEEQYIFIHQCVQLMWMKKK 287
Query: 490 TEIPARSL 497
+ +
Sbjct: 288 QQFCISDV 295
Score = 446 bits (1149), Expect = e-144
Identities = 110/278 (39%), Positives = 155/278 (55%), Gaps = 17/278 (6%)
Query: 734 ESI-EPGQQFTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYR 792
E + G + + +N+ KNRY N++ YD SRV L +++ G+DYINANY GY
Sbjct: 30 EELKLIGLDIPHFAADLPLNRCKNRYTNILPYDFSRVRLVSMNEEEGADYINANYIPGYN 89
Query: 793 KHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWP-SRGTETYGH 851
Y+ATQGPL ET DFW+MV + +S IVM+T+ E+ R+KCD YWP + YG
Sbjct: 90 SPQEYIATQGPLPETRNDFWKMVLQQKSQIIVMLTQCNEKRRVKCDHYWPFTEEPIAYGD 149
Query: 852 ITVTLQDVQELASYCIRTFMINKGADSERREIKQLQFTAWPDHGVP--EHPAPFLLFLRR 909
ITV + +E + R F IN E +++ +TAWPDHGVP L F+
Sbjct: 150 ITVEMISEEEQDDWACRHFRINYA--DEMQDVMHFNYTAWPDHGVPTANAAESILQFVHM 207
Query: 910 VRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVT 969
VR + GP+I+HCSAGVGRTG FI +D +++ I+ + VDI G V+
Sbjct: 208 VRQQATKSK-----------GPMIIHCSAGVGRTGTFIALDRLLQHIRDHEFVDILGLVS 256
Query: 970 CLRAQRNYMVQTEDQYMFIHDALLEAVLCGNTEIPASS 1007
+R+ R MVQTE+QY+FIH + + + S
Sbjct: 257 EMRSYRMSMVQTEEQYIFIHQCVQLMWMKKKQQFCISD 294
Score = 219 bits (560), Expect = 4e-64
Identities = 64/204 (31%), Positives = 95/204 (46%), Gaps = 38/204 (18%)
Query: 1296 KTEFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASF 1355
+F++L I + F A LP N+ KNR +ILP + SRV L + EG+DYINA++
Sbjct: 26 SLQFEELKLIGLDIPHFA-ADLPLNRCKNRYTNILPYDFSRVRLVSMNEEEGADYINANY 84
Query: 1356 IDGYRLRSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------- 1402
I GY YIATQGPL +T DFW+M+ + S I+VMLT+ E R
Sbjct: 85 IPGYNSPQEYIATQGPLPETRNDFWKMVLQQKSQIIVMLTQCNEKRRVKCDHYWPFTEEP 144
Query: 1403 ------------------YVLREFKVTDARDATSRTLRQFQLIDWPEQGVP--KSGDGFI 1442
+ R F++ + + F WP+ GVP + + +
Sbjct: 145 IAYGDITVEMISEEEQDDWACRHFRIN--YADEMQDVMHFNYTAWPDHGVPTANAAESIL 202
Query: 1443 DFIGQVHKTKEQFGQDGPITVHCS 1466
F+ V + + GP+ +HCS
Sbjct: 203 QFVHMVRQQATK--SKGPMIIHCS 224
Score = 177 bits (451), Expect = 1e-49
Identities = 46/142 (32%), Positives = 70/142 (49%), Gaps = 7/142 (4%)
Query: 1504 EKCHQYWPSER-SIRYEWFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQLIDWPE 1562
KC YWP I Y VE I+E + R F++ + + F WP+
Sbjct: 132 VKCDHYWPFTEEPIAYGDITVEMISEEEQDDWACRHFRIN--YADEMQDVMHFNYTAWPD 189
Query: 1563 QGVP--KSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEG 1620
GVP + + + F+ V + + GP+ +HCSAGVGRTG FI L +L+ ++
Sbjct: 190 HGVPTANAAESILQFVHMVRQQATK--SKGPMIIHCSAGVGRTGTFIALDRLLQHIRDHE 247
Query: 1621 VIDLFQTVRILRTQRPAMVQTE 1642
+D+ V +R+ R +MVQTE
Sbjct: 248 FVDILGLVSEMRSYRMSMVQTE 269
Score = 112 bits (283), Expect = 3e-27
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 657 GIPGRD---GFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGV 713
G+P + + F+ V + + GP+ +HCSAGVGRTG FI L +L+ ++
Sbjct: 191 GVPTANAAESILQFVHMVRQQATK--SKGPMIIHCSAGVGRTGTFIALDRLLQHIRDHEF 248
Query: 714 IDLFQTVRILRTQRPAMVQTES 735
+D+ V +R+ R +MVQTE
Sbjct: 249 VDILGLVSEMRSYRMSMVQTEE 270
Score = 102 bits (257), Expect = 8e-24
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 587 PITVHCSRLAQHIENLKANDNLKFSQEYESI-EPGQQFTWDHSSMEMNKAKNRYANVIAY 645
P+ + +I+++ + + KFS ++E + G + + +N+ KNRY N++ Y
Sbjct: 4 PVQL--DDFDAYIKDMAKDSDYKFSLQFEELKLIGLDIPHFAADLPLNRCKNRYTNILPY 61
Query: 646 DHSRVILSTVDGIPGRD 662
D SRV L +++ G D
Sbjct: 62 DFSRVRLVSMNEEEGAD 78
Score = 71.5 bits (176), Expect = 3e-13
Identities = 20/67 (29%), Positives = 25/67 (37%), Gaps = 30/67 (44%)
Query: 1729 GPLIVHCSAGVGRTGCFIVIDA------------------------------KEQYQFCY 1758
GP+I+HCSAGVGRTG FI +D +EQY F +
Sbjct: 217 GPMIIHCSAGVGRTGTFIALDRLLQHIRDHEFVDILGLVSEMRSYRMSMVQTEEQYIFIH 276
Query: 1759 HAALEYL 1765
Sbjct: 277 QCVQLMW 283
Score = 63.0 bits (154), Expect = 2e-10
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 492 IPARSLHVHIQKLMSMEVGDTSTGMELEFKKLSNIRAEPSRFISASLPCNKHKNRLVHIL 551
+ +I+ + D+ L+F++L I + F A LP N+ KNR +IL
Sbjct: 5 VQLDDFDAYIKDMAK----DSDYKFSLQFEELKLIGLDIPHFA-ADLPLNRCKNRYTNIL 59
Query: 552 PVESSRVCLTPVRGDGFIDFI 572
P + SRV L + + D+I
Sbjct: 60 PYDFSRVRLVSMNEEEGADYI 80
Score = 34.5 bits (80), Expect = 0.24
Identities = 7/28 (25%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 566 DGFIDFIGQVHKTKEQFGQDGPITVHCS 593
+ + F+ V + + GP+ +HCS
Sbjct: 199 ESILQFVHMVRQQATK--SKGPMIIHCS 224
>3i36_A Vascular protein tyrosine phosphatase 1; PTP, hydrolase; 1.84A
{Rattus norvegicus} PDB: 2nz6_A 2cfv_A
Length = 342
Score = 492 bits (1268), Expect = e-160
Identities = 124/337 (36%), Positives = 179/337 (53%), Gaps = 19/337 (5%)
Query: 181 EMRRLNFQTPGMVSHPPIPISRLAQHIENLKANDNLKFSQEYESIE-PGQQFTWDHSSME 239
+ ++F I + + + +A+ N F++EYE ++ G + +
Sbjct: 9 KNNEVSFSQIKPKKSKLIRVENFEAYFKKQQADSNCGFAEEYEDLKLIGISLPKYAAEIA 68
Query: 240 MNKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGD 299
N+ KNRY NV+ YD SRV LS V DYINANY GY ++ATQGPL TL D
Sbjct: 69 ENRGKNRYNNVLPYDISRVKLS-VQTHSTDDYINANYMPGYHSKKDFIATQGPLPNTLKD 127
Query: 300 FWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYCIRTF 359
FWRMVWE IVM+TK E+ R KC++YWPS+ + YG ITV + L + IR F
Sbjct: 128 FWRMVWEKNVYAIVMLTKCVEQGRTKCEEYWPSKQAQDYGDITVAMTSEVVLPEWTIRDF 187
Query: 360 MINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVG 419
++ SE ++Q FT+WPDHGVP+ + F VR
Sbjct: 188 VVKNMQSSESHPLRQFHFTSWPDHGVPDTTDLLINFRYLVRDYMKQIPP---------ES 238
Query: 420 PLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHD 479
P++VHCSAGVGRTG FI ID +I +I+++ TVD+YG V LR R MVQTEDQY+F++
Sbjct: 239 PILVHCSAGVGRTGTFIAIDRLIYQIENENTVDVYGIVYDLRMHRPLMVQTEDQYVFLNQ 298
Query: 480 ALLEAVLCGNT--------EIPARSLHVHIQKLMSME 508
+L+ + A +++ +++++
Sbjct: 299 CVLDIIRAQKDSKVDLIYQNTTAMTIYENLERVSMFG 335
Score = 446 bits (1148), Expect = e-143
Identities = 116/276 (42%), Positives = 153/276 (55%), Gaps = 11/276 (3%)
Query: 734 ESIE-PGQQFTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYR 792
E ++ G + + N+ KNRY NV+ YD SRV LS V DYINANY GY
Sbjct: 51 EDLKLIGISLPKYAAEIAENRGKNRYNNVLPYDISRVKLS-VQTHSTDDYINANYMPGYH 109
Query: 793 KHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGHI 852
++ATQGPL TL DFWRMVWE IVM+TK E+ R KC++YWPS+ + YG I
Sbjct: 110 SKKDFIATQGPLPNTLKDFWRMVWEKNVYAIVMLTKCVEQGRTKCEEYWPSKQAQDYGDI 169
Query: 853 TVTLQDVQELASYCIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRA 912
TV + L + IR F++ SE ++Q FT+WPDHGVP+ + F VR
Sbjct: 170 TVAMTSEVVLPEWTIRDFVVKNMQSSESHPLRQFHFTSWPDHGVPDTTDLLINFRYLVRD 229
Query: 913 MNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLR 972
P++VHCSAGVGRTG FI ID +I +I+++ TVD+YG V LR
Sbjct: 230 YMKQIPP---------ESPILVHCSAGVGRTGTFIAIDRLIYQIENENTVDVYGIVYDLR 280
Query: 973 AQRNYMVQTEDQYMFIHDALLEAVLCGNTEIPASSQ 1008
R MVQTEDQY+F++ +L+ +
Sbjct: 281 MHRPLMVQTEDQYVFLNQCVLDIIRAQKDSKVDLIY 316
Score = 228 bits (583), Expect = 2e-66
Identities = 69/201 (34%), Positives = 100/201 (49%), Gaps = 32/201 (15%)
Query: 1296 KTEFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASF 1355
E++ L I ++ A + N+ KNR ++LP + SRV L+ + DYINA++
Sbjct: 47 AEEYEDLKLIGISLPKYA-AEIAENRGKNRYNNVLPYDISRVKLSV-QTHSTDDYINANY 104
Query: 1356 IDGYRLRSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------- 1402
+ GY + +IATQGPL +T +DFWRM+WE N +VMLTK E GR
Sbjct: 105 MPGYHSKKDFIATQGPLPNTLKDFWRMVWEKNVYAIVMLTKCVEQGRTKCEEYWPSKQAQ 164
Query: 1403 -----------------YVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFI 1445
+ +R+F V + + + S LRQF WP+ GVP + D I+F
Sbjct: 165 DYGDITVAMTSEVVLPEWTIRDFVVKNMQSSESHPLRQFHFTSWPDHGVPDTTDLLINFR 224
Query: 1446 GQVHKTKEQFGQDGPITVHCS 1466
V +Q + PI VHCS
Sbjct: 225 YLVRDYMKQIPPESPILVHCS 245
Score = 200 bits (510), Expect = 7e-57
Identities = 55/140 (39%), Positives = 83/140 (59%)
Query: 1503 QEKCHQYWPSERSIRYEWFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQLIDWPE 1562
+ KC +YWPS+++ Y V +E +P++ +R+F V + + + S LRQF WP+
Sbjct: 151 RTKCEEYWPSKQAQDYGDITVAMTSEVVLPEWTIRDFVVKNMQSSESHPLRQFHFTSWPD 210
Query: 1563 QGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVI 1622
GVP + D I+F V +Q + PI VHCSAGVGRTG FI + ++ +++ E +
Sbjct: 211 HGVPDTTDLLINFRYLVRDYMKQIPPESPILVHCSAGVGRTGTFIAIDRLIYQIENENTV 270
Query: 1623 DLFQTVRILRTQRPAMVQTE 1642
D++ V LR RP MVQTE
Sbjct: 271 DVYGIVYDLRMHRPLMVQTE 290
Score = 119 bits (301), Expect = 4e-29
Identities = 34/79 (43%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 657 GIPGR-DGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVID 715
G+P D I+F V +Q + PI VHCSAGVGRTG FI + ++ +++ E +D
Sbjct: 212 GVPDTTDLLINFRYLVRDYMKQIPPESPILVHCSAGVGRTGTFIAIDRLIYQIENENTVD 271
Query: 716 LFQTVRILRTQRPAMVQTE 734
++ V LR RP MVQTE
Sbjct: 272 VYGIVYDLRMHRPLMVQTE 290
Score = 97.0 bits (242), Expect = 2e-21
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 587 PITVHCSRLAQHIENLKANDNLKFSQEYESIE-PGQQFTWDHSSMEMNKAKNRYANVIAY 645
I V + + +A+ N F++EYE ++ G + + N+ KNRY NV+ Y
Sbjct: 25 LIRV--ENFEAYFKKQQADSNCGFAEEYEDLKLIGISLPKYAAEIAENRGKNRYNNVLPY 82
Query: 646 DHSRVILSTVDGIPGRD 662
D SRV LS V D
Sbjct: 83 DISRVKLS-VQTHSTDD 98
Score = 72.0 bits (177), Expect = 3e-13
Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 30/67 (44%)
Query: 1729 GPLIVHCSAGVGRTGCFIVIDA------------------------------KEQYQFCY 1758
P++VHCSAGVGRTG FI ID ++QY F
Sbjct: 238 SPILVHCSAGVGRTGTFIAIDRLIYQIENENTVDVYGIVYDLRMHRPLMVQTEDQYVFLN 297
Query: 1759 HAALEYL 1765
L+ +
Sbjct: 298 QCVLDII 304
Score = 60.0 bits (146), Expect = 2e-09
Identities = 24/112 (21%), Positives = 45/112 (40%), Gaps = 13/112 (11%)
Query: 461 RAQRNYMVQTEDQYMFIHDALLEAVLCGNTEIPARSLHVHIQKLMSMEVGDTSTGMELEF 520
R +R E + I + I + + +K + D++ G E+
Sbjct: 2 RKKRKDAKNNEVSFSQIKPK-------KSKLIRVENFEAYFKKQQA----DSNCGFAEEY 50
Query: 521 KKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLTPVRGDGFIDFI 572
+ L I ++ A + N+ KNR ++LP + SRV L+ + D+I
Sbjct: 51 EDLKLIGISLPKYA-AEIAENRGKNRYNNVLPYDISRVKLSV-QTHSTDDYI 100
Score = 42.7 bits (101), Expect = 8e-04
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 561 TPVRGDGFIDFIGQVHKTKEQFGQDGPITVHCS 593
P D I+F V +Q + PI VHCS
Sbjct: 213 VPDTTDLLINFRYLVRDYMKQIPPESPILVHCS 245
>2h4v_A Receptor-type tyrosine-protein phosphatase gamma; tyrosine receptor
phosphatase, human, structural GENO structural genomics
consortium, SGC; HET: FLC; 1.55A {Homo sapiens} PDB:
3qcd_A 3qcc_A 3qcb_A 3qce_A* 3qcf_A* 3qcg_A* 3qch_A*
3qci_A* 3qcj_A* 3qck_A* 2pbn_A 2hy3_A 3qcm_A* 3qcl_A*
3qcn_A
Length = 320
Score = 489 bits (1261), Expect = e-160
Identities = 146/335 (43%), Positives = 194/335 (57%), Gaps = 35/335 (10%)
Query: 174 HAPSDPVEMRRLNFQTPGMVSHPPIPISRLAQHIENLKANDNLKFSQEYESI---EPGQQ 230
H S V++ N + + +HI L +N+ FS+++E +
Sbjct: 5 HHHSSGVDLGTEN--------LYFQSMKQFVKHIGELYSNNQHGFSEDFEEVQRCTADMN 56
Query: 231 FTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVDGI--PGSDYINANYCDGYRKHNAYVA 288
T +HS+ NK KNRY N++AYDHSRV L + G SDYINANY DGY K AY+A
Sbjct: 57 ITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVDGYNKAKAYIA 116
Query: 289 TQGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDV 348
TQGPL+ T DFWRM+WE + IVM+T L E+ R KCDQYWP+ +E YG+I VTL+
Sbjct: 117 TQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKST 176
Query: 349 QELASYCIRTFMINK-----------GADSERREIKQLQFTAWPDHGVPEHPAPFLLFLR 397
+ A Y +R F I R + Q +T WPD GVPE+ P L F+R
Sbjct: 177 KIHACYTVRRFSIRNTKVKKGQKGNPKGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVR 236
Query: 398 RVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHV 457
R A GP++VHCSAGVGRTG +IVID+M+++IK TV++ G +
Sbjct: 237 RSSAARMPET-----------GPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFL 285
Query: 458 TCLRAQRNYMVQTEDQYMFIHDALLEAVLCGNTEI 492
+R QRNY+VQTE+QY+FIHDALLEA+L TE+
Sbjct: 286 KHIRTQRNYLVQTEEQYIFIHDALLEAILGKETEV 320
Score = 455 bits (1173), Expect = e-147
Identities = 136/315 (43%), Positives = 181/315 (57%), Gaps = 29/315 (9%)
Query: 707 RMQYEGVIDLFQTVRILRTQRPAMVQTE-----SIEPGQQFTWDHSSMEMNKAKNRYANV 761
+ ++ + + + L + + T +HS+ NK KNRY N+
Sbjct: 17 NLYFQSMKQFVKHIGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINI 76
Query: 762 IAYDHSRVILSTVDGI--PGSDYINANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELR 819
+AYDHSRV L + G SDYINANY DGY K AY+ATQGPL+ T DFWRM+WE
Sbjct: 77 LAYDHSRVKLRPLPGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQN 136
Query: 820 SVTIVMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYCIRTFMINK----- 874
+ IVM+T L E+ R KCDQYWP+ +E YG+I VTL+ + A Y +R F I
Sbjct: 137 TGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTKVKK 196
Query: 875 ------GADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLP 928
R + Q +T WPD GVPE+ P L F+RR A
Sbjct: 197 GQKGNPKGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPET---------- 246
Query: 929 VGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFI 988
GP++VHCSAGVGRTG +IVID+M+++IK TV++ G + +R QRNY+VQTE+QY+FI
Sbjct: 247 -GPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFI 305
Query: 989 HDALLEAVLCGNTEI 1003
HDALLEA+L TE+
Sbjct: 306 HDALLEAILGKETEV 320
Score = 218 bits (558), Expect = 2e-63
Identities = 70/215 (32%), Positives = 104/215 (48%), Gaps = 46/215 (21%)
Query: 1296 KTEFKKLSNIRAEPSR-FISASLPCNKHKNRLVHILPVESSRVCLTPVRGIE--GSDYIN 1352
+F+++ A+ + ++ P NKHKNR ++IL + SRV L P+ G + SDYIN
Sbjct: 42 SEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYIN 101
Query: 1353 ASFIDGYRLRSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR---------- 1402
A+++DGY AYIATQGPL T EDFWRM+WE N+ I+VM+T L E GR
Sbjct: 102 ANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTE 161
Query: 1403 --------------------YVLREFKVTDARDAT-----------SRTLRQFQLIDWPE 1431
Y +R F + + + R + Q+ WP+
Sbjct: 162 NSEEYGNIIVTLKSTKIHACYTVRRFSIRNTKVKKGQKGNPKGRQNERVVIQYHYTQWPD 221
Query: 1432 QGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCS 1466
GVP+ + F+ + + + GP+ VHCS
Sbjct: 222 MGVPEYALPVLTFVRRSS--AARMPETGPVLVHCS 254
Score = 187 bits (476), Expect = 1e-52
Identities = 44/151 (29%), Positives = 77/151 (50%), Gaps = 13/151 (8%)
Query: 1503 QEKCHQYWPSERSIRYEWFVVEPIAEYNMPQYVLREFKVTDARDAT-----------SRT 1551
+ KC QYWP+E S Y +V + Y +R F + + + R
Sbjct: 151 RRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTKVKKGQKGNPKGRQNERV 210
Query: 1552 LRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSI 1611
+ Q+ WP+ GVP+ + F+ + + + GP+ VHCSAGVGRTG +I +
Sbjct: 211 VIQYHYTQWPDMGVPEYALPVLTFVRRSSA--ARMPETGPVLVHCSAGVGRTGTYIVIDS 268
Query: 1612 VLERMQYEGVIDLFQTVRILRTQRPAMVQTE 1642
+L++++ + +++ ++ +RTQR +VQTE
Sbjct: 269 MLQQIKDKSTVNVLGFLKHIRTQRNYLVQTE 299
Score = 113 bits (286), Expect = 2e-27
Identities = 26/79 (32%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 657 GIPGR-DGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVID 715
G+P + F+ + + + GP+ VHCSAGVGRTG +I + +L++++ + ++
Sbjct: 223 GVPEYALPVLTFVRRSSA--ARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVN 280
Query: 716 LFQTVRILRTQRPAMVQTE 734
+ ++ +RTQR +VQTE
Sbjct: 281 VLGFLKHIRTQRNYLVQTE 299
Score = 96.6 bits (241), Expect = 1e-21
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 7/81 (8%)
Query: 587 PITVHCSRLAQHIENLKANDNLKFSQEYESI---EPGQQFTWDHSSMEMNKAKNRYANVI 643
++ + +HI L +N+ FS+++E + T +HS+ NK KNRY N++
Sbjct: 20 FQSM--KQFVKHIGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINIL 77
Query: 644 AYDHSRVILSTVDGI--PGRD 662
AYDHSRV L + G D
Sbjct: 78 AYDHSRVKLRPLPGKDSKHSD 98
Score = 77.3 bits (191), Expect = 5e-15
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 475 MFIHDALLEAVLCGNTEIPARSLHVHIQKLMSMEVGDTSTGMELEFKKLSNIRAEPSR-F 533
M H V G + +S+ ++ + + + G +F+++ A+ +
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSMKQFVKHIGELY-SNNQHGFSEDFEEVQRCTADMNITA 59
Query: 534 ISASLPCNKHKNRLVHILPVESSRVCLTPVRGD 566
++ P NKHKNR ++IL + SRV L P+ G
Sbjct: 60 EHSNHPENKHKNRYINILAYDHSRVKLRPLPGK 92
Score = 71.9 bits (177), Expect = 3e-13
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 30/71 (42%)
Query: 1729 GPLIVHCSAGVGRTGCFIVIDA------------------------------KEQYQFCY 1758
GP++VHCSAGVGRTG +IVID+ +EQY F +
Sbjct: 247 GPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIH 306
Query: 1759 HAALEYLGSFD 1769
A LE + +
Sbjct: 307 DALLEAILGKE 317
Score = 36.9 bits (86), Expect = 0.049
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 561 TPVRGDGFIDFIGQVHKTKEQFGQDGPITVHCS 593
P + F+ + + + GP+ VHCS
Sbjct: 224 VPEYALPVLTFVRRSSA--ARMPETGPVLVHCS 254
Score = 31.1 bits (71), Expect = 3.1
Identities = 5/22 (22%), Positives = 6/22 (27%)
Query: 986 MFIHDALLEAVLCGNTEIPASS 1007
M H V G + S
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQS 22
>2pa5_A Tyrosine-protein phosphatase non-receptor type 9; protein tyrosine
phosphatase, MEG2, PTPN9, structural genomi structural
genomics consortium, SGC; 1.60A {Homo sapiens}
Length = 314
Score = 481 bits (1241), Expect = e-157
Identities = 112/315 (35%), Positives = 167/315 (53%), Gaps = 7/315 (2%)
Query: 192 MVSHPPIPIS-RLAQHIENLKANDNLKFSQEYESIEP-GQQFTWDHSSMEMNKAKNRYAN 249
M H P P + + + ++ + A +EYE I T+ S N KNRY +
Sbjct: 1 MSVHVPGPHAMTIQELVDYVNARQKQGIYEEYEDIRRENPVGTFHCSMSPGNLEKNRYGD 60
Query: 250 VIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRS 309
V D +RV L+ G +DYINA++ DGY++ NAY+ TQGPL+ T DFW MVWE +
Sbjct: 61 VPCLDQTRVKLTKRSGHTQTDYINASFMDGYKQKNAYIGTQGPLENTYRDFWLMVWEQKV 120
Query: 310 VTIVMMTKLEERTRIKCDQYWPSR--GTETYGHITVTLQDVQELASYCIRTFMINKGADS 367
+ IVM T+ EE R KC QYWP +G +TVT V+ + Y T I+ +
Sbjct: 121 LVIVMTTRFEEGGRRKCGQYWPLEKDSRIRFGFLTVTNLGVENMNHYKKTTLEIHNTEER 180
Query: 368 ERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLP--VGPLIVHC 425
++R++ QF +WPD+GVP A + FLR VR S + P++VHC
Sbjct: 181 QKRQVTHFQFLSWPDYGVPSSAASLIDFLRVVRNQQSLAVSNMGARSKGQCPEPPIVVHC 240
Query: 426 SAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLEAV 485
SAG+GRTG F +D + +++ T++++ V+ +R QR + +QT +QY F + A+LE
Sbjct: 241 SAGIGRTGTFCSLDICLAQLEELGTLNVFQTVSRMRTQRAFSIQTPEQYYFCYKAILE-F 299
Query: 486 LCGNTEIPARSLHVH 500
+ A H H
Sbjct: 300 AEKEGMVSAHHHHHH 314
Score = 439 bits (1131), Expect = e-141
Identities = 103/279 (36%), Positives = 151/279 (54%), Gaps = 6/279 (2%)
Query: 734 ESIEP-GQQFTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYR 792
E I T+ S N KNRY +V D +RV L+ G +DYINA++ DGY+
Sbjct: 33 EDIRRENPVGTFHCSMSPGNLEKNRYGDVPCLDQTRVKLTKRSGHTQTDYINASFMDGYK 92
Query: 793 KHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSR--GTETYG 850
+ NAY+ TQGPL+ T DFW MVWE + + IVM T+ EE R KC QYWP +G
Sbjct: 93 QKNAYIGTQGPLENTYRDFWLMVWEQKVLVIVMTTRFEEGGRRKCGQYWPLEKDSRIRFG 152
Query: 851 HITVTLQDVQELASYCIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRV 910
+TVT V+ + Y T I+ + ++R++ QF +WPD+GVP A + FLR V
Sbjct: 153 FLTVTNLGVENMNHYKKTTLEIHNTEERQKRQVTHFQFLSWPDYGVPSSAASLIDFLRVV 212
Query: 911 RAMNPGTNSLESSGVNLP--VGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHV 968
R S + P++VHCSAG+GRTG F +D + +++ T++++ V
Sbjct: 213 RNQQSLAVSNMGARSKGQCPEPPIVVHCSAGIGRTGTFCSLDICLAQLEELGTLNVFQTV 272
Query: 969 TCLRAQRNYMVQTEDQYMFIHDALLEAVLCGNTEIPASS 1007
+ +R QR + +QT +QY F + A+LE + A
Sbjct: 273 SRMRTQRAFSIQTPEQYYFCYKAILE-FAEKEGMVSAHH 310
Score = 226 bits (579), Expect = 2e-66
Identities = 63/212 (29%), Positives = 93/212 (43%), Gaps = 44/212 (20%)
Query: 1298 EFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFID 1357
E++ + + F + P N KNR + ++ +RV LT G +DYINASF+D
Sbjct: 31 EYEDIRRENPVGT-FHCSMSPGNLEKNRYGDVPCLDQTRVKLTKRSGHTQTDYINASFMD 89
Query: 1358 GYRLRSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR--------------- 1402
GY+ ++AYI TQGPL +T DFW M+WE ++VM T+ +E GR
Sbjct: 90 GYKQKNAYIGTQGPLENTYRDFWLMVWEQKVLVIVMTTRFEEGGRRKCGQYWPLEKDSRI 149
Query: 1403 -----------------YVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFI 1445
Y ++ + + R + FQ + WP+ GVP S IDF+
Sbjct: 150 RFGFLTVTNLGVENMNHYKKTTLEIHNTEERQKRQVTHFQFLSWPDYGVPSSAASLIDFL 209
Query: 1446 GQVHKTKEQF-----------GQDGPITVHCS 1466
V + + PI VHCS
Sbjct: 210 RVVRNQQSLAVSNMGARSKGQCPEPPIVVHCS 241
Score = 189 bits (482), Expect = 2e-53
Identities = 53/153 (34%), Positives = 78/153 (50%), Gaps = 13/153 (8%)
Query: 1503 QEKCHQYWPSER--SIRYEWFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQLIDW 1560
+ KC QYWP E+ IR+ + V + NM Y ++ + + R + FQ + W
Sbjct: 134 RRKCGQYWPLEKDSRIRFGFLTVTNLGVENMNHYKKTTLEIHNTEERQKRQVTHFQFLSW 193
Query: 1561 PEQGVPKSGDGFIDFIGQVHKTKEQF-----------GQDGPITVHCSAGVGRTGVFITL 1609
P+ GVP S IDF+ V + + PI VHCSAG+GRTG F +L
Sbjct: 194 PDYGVPSSAASLIDFLRVVRNQQSLAVSNMGARSKGQCPEPPIVVHCSAGIGRTGTFCSL 253
Query: 1610 SIVLERMQYEGVIDLFQTVRILRTQRPAMVQTE 1642
I L +++ G +++FQTV +RTQR +QT
Sbjct: 254 DICLAQLEELGTLNVFQTVSRMRTQRAFSIQTP 286
Score = 109 bits (275), Expect = 5e-26
Identities = 33/91 (36%), Positives = 47/91 (51%), Gaps = 12/91 (13%)
Query: 657 GIPGR-DGFIDFIGQVHKTKEQF-----------GQDGPITVHCSAGVGRTGVFITLSIV 704
G+P IDF+ V + + PI VHCSAG+GRTG F +L I
Sbjct: 197 GVPSSAASLIDFLRVVRNQQSLAVSNMGARSKGQCPEPPIVVHCSAGIGRTGTFCSLDIC 256
Query: 705 LERMQYEGVIDLFQTVRILRTQRPAMVQTES 735
L +++ G +++FQTV +RTQR +QT
Sbjct: 257 LAQLEELGTLNVFQTVSRMRTQRAFSIQTPE 287
Score = 94.3 bits (235), Expect = 1e-20
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Query: 591 HCSRLAQHIENLKANDNLKFSQEYESIEP-GQQFTWDHSSMEMNKAKNRYANVIAYDHSR 649
H + + ++ + A +EYE I T+ S N KNRY +V D +R
Sbjct: 9 HAMTIQELVDYVNARQKQGIYEEYEDIRRENPVGTFHCSMSPGNLEKNRYGDVPCLDQTR 68
Query: 650 VILSTVDGIPGRD 662
V L+ G D
Sbjct: 69 VKLTKRSGHTQTD 81
Score = 71.9 bits (177), Expect = 3e-13
Identities = 24/82 (29%), Positives = 31/82 (37%), Gaps = 30/82 (36%)
Query: 1714 ILKSSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDA----------------------- 1750
+ + S P P++VHCSAG+GRTG F +D
Sbjct: 219 AVSNMGARSKGQCPEPPIVVHCSAGIGRTGTFCSLDICLAQLEELGTLNVFQTVSRMRTQ 278
Query: 1751 -------KEQYQFCYHAALEYL 1765
EQY FCY A LE+
Sbjct: 279 RAFSIQTPEQYYFCYKAILEFA 300
Score = 58.1 bits (141), Expect = 8e-09
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Query: 499 VHIQKLMSMEVGDTSTGMELEFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSRV 558
+ IQ+L+ G+ E++ + + F + P N KNR + ++ +RV
Sbjct: 11 MTIQELVDYVNARQKQGIYEEYEDIRRENPVGT-FHCSMSPGNLEKNRYGDVPCLDQTRV 69
Query: 559 CLTPVRGDGFIDFI 572
LT G D+I
Sbjct: 70 KLTKRSGHTQTDYI 83
Score = 33.0 bits (76), Expect = 0.82
Identities = 11/44 (25%), Positives = 14/44 (31%), Gaps = 11/44 (25%)
Query: 561 TPVRGDGFIDFIGQVHKTKEQF-----------GQDGPITVHCS 593
P IDF+ V + + PI VHCS
Sbjct: 198 VPSSAASLIDFLRVVRNQQSLAVSNMGARSKGQCPEPPIVVHCS 241
>3s3e_A Tyrosine-protein phosphatase 10D; differentiation, neurogenesis,
signal transduction, developm protein, hydrolase; 2.40A
{Drosophila melanogaster} PDB: 3s3f_A 3s3h_A* 3s3k_A*
Length = 307
Score = 474 bits (1223), Expect = e-154
Identities = 117/299 (39%), Positives = 167/299 (55%), Gaps = 15/299 (5%)
Query: 189 TPGMVSHPPIPISRLAQHIENLKANDNLKFSQEYESIEP-GQQFTWDHSSMEMNKAKNRY 247
++ PI I A+H + A+ + +FS+E+E ++ G+ + + N+ KNR+
Sbjct: 17 RGSHMASRPILIKNFAEHYRLMSADSDFRFSEEFEELKHVGRDQPCTFADLPCNRPKNRF 76
Query: 248 ANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDFWRMVWEL 307
N++ YDHSR L VD GSDYINANY G+ ++ TQGPL T DFWRM WE
Sbjct: 77 TNILPYDHSRFKLQPVDDDEGSDYINANYVPGHNSPREFIVTQGPLHSTRDDFWRMCWES 136
Query: 308 RSVTIVMMTKLEERTRIKCDQYWPSRGTE-TYGHITVTLQDVQELASYCIRTFMINKGAD 366
S IVM+T+ E+ R KCDQYWP+ YG I V + + A + + FM+ +G
Sbjct: 137 NSRAIVMLTRCFEKGREKCDQYWPNDTVPVFYGDIKVQILNDSHYADWVMTEFMLCRG-- 194
Query: 367 SERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCS 426
SE+R ++ FT WPD GVP P + F+R R P++VHCS
Sbjct: 195 SEQRILRHFHFTTWPDFGVPNPPQTLVRFVRAFRDRIGAEQ-----------RPIVVHCS 243
Query: 427 AGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLEAV 485
AGVGR+G FI +D ++++I VDI+G V +R +R +MVQTE QY+ IH LL +
Sbjct: 244 AGVGRSGTFITLDRILQQINTSDYVDIFGIVYAMRKERVWMVQTEQQYICIHQCLLAVL 302
Score = 430 bits (1109), Expect = e-138
Identities = 108/265 (40%), Positives = 149/265 (56%), Gaps = 15/265 (5%)
Query: 734 ESIEP-GQQFTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYR 792
E ++ G+ + + N+ KNR+ N++ YDHSR L VD GSDYINANY G+
Sbjct: 51 EELKHVGRDQPCTFADLPCNRPKNRFTNILPYDHSRFKLQPVDDDEGSDYINANYVPGHN 110
Query: 793 KHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTE-TYGH 851
++ TQGPL T DFWRM WE S IVM+T+ E+ R KCDQYWP+ YG
Sbjct: 111 SPREFIVTQGPLHSTRDDFWRMCWESNSRAIVMLTRCFEKGREKCDQYWPNDTVPVFYGD 170
Query: 852 ITVTLQDVQELASYCIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVR 911
I V + + A + + FM+ +G SE+R ++ FT WPD GVP P + F+R R
Sbjct: 171 IKVQILNDSHYADWVMTEFMLCRG--SEQRILRHFHFTTWPDFGVPNPPQTLVRFVRAFR 228
Query: 912 AMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCL 971
P++VHCSAGVGR+G FI +D ++++I VDI+G V +
Sbjct: 229 DRIGAEQ-----------RPIVVHCSAGVGRSGTFITLDRILQQINTSDYVDIFGIVYAM 277
Query: 972 RAQRNYMVQTEDQYMFIHDALLEAV 996
R +R +MVQTE QY+ IH LL +
Sbjct: 278 RKERVWMVQTEQQYICIHQCLLAVL 302
Score = 222 bits (569), Expect = 4e-65
Identities = 71/202 (35%), Positives = 95/202 (47%), Gaps = 36/202 (17%)
Query: 1296 KTEFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASF 1355
EF++L ++ + A LPCN+ KNR +ILP + SR L PV EGSDYINA++
Sbjct: 47 SEEFEELKHVGRDQPCTF-ADLPCNRPKNRFTNILPYDHSRFKLQPVDDDEGSDYINANY 105
Query: 1356 IDGYRLRSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------- 1402
+ G+ +I TQGPL T +DFWRM WE NS +VMLT+ E GR
Sbjct: 106 VPGHNSPREFIVTQGPLHSTRDDFWRMCWESNSRAIVMLTRCFEKGREKCDQYWPNDTVP 165
Query: 1403 ------------------YVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDF 1444
+V+ EF + R + R LR F WP+ GVP + F
Sbjct: 166 VFYGDIKVQILNDSHYADWVMTEFMLC--RGSEQRILRHFHFTTWPDFGVPNPPQTLVRF 223
Query: 1445 IGQVHKTKEQFGQDGPITVHCS 1466
+ + PI VHCS
Sbjct: 224 VRAFRDRIG--AEQRPIVVHCS 243
Score = 185 bits (471), Expect = 5e-52
Identities = 50/141 (35%), Positives = 75/141 (53%), Gaps = 5/141 (3%)
Query: 1503 QEKCHQYWPSE-RSIRYEWFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQLIDWP 1561
+EKC QYWP++ + Y V+ + + + +V+ EF + R + R LR F WP
Sbjct: 152 REKCDQYWPNDTVPVFYGDIKVQILNDSHYADWVMTEFMLC--RGSEQRILRHFHFTTWP 209
Query: 1562 EQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGV 1621
+ GVP + F+ + PI VHCSAGVGR+G FITL +L+++
Sbjct: 210 DFGVPNPPQTLVRFVRAFRDRIG--AEQRPIVVHCSAGVGRSGTFITLDRILQQINTSDY 267
Query: 1622 IDLFQTVRILRTQRPAMVQTE 1642
+D+F V +R +R MVQTE
Sbjct: 268 VDIFGIVYAMRKERVWMVQTE 288
Score = 112 bits (283), Expect = 4e-27
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 657 GIPGR-DGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVID 715
G+P + F+ + PI VHCSAGVGR+G FITL +L+++ +D
Sbjct: 212 GVPNPPQTLVRFVRAFRDRIG--AEQRPIVVHCSAGVGRSGTFITLDRILQQINTSDYVD 269
Query: 716 LFQTVRILRTQRPAMVQTES 735
+F V +R +R MVQTE
Sbjct: 270 IFGIVYAMRKERVWMVQTEQ 289
Score = 99.3 bits (248), Expect = 2e-22
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 587 PITVHCSRLAQHIENLKANDNLKFSQEYESIEP-GQQFTWDHSSMEMNKAKNRYANVIAY 645
PI + A+H + A+ + +FS+E+E ++ G+ + + N+ KNR+ N++ Y
Sbjct: 25 PILI--KNFAEHYRLMSADSDFRFSEEFEELKHVGRDQPCTFADLPCNRPKNRFTNILPY 82
Query: 646 DHSRVILSTVDGIPGRD 662
DHSR L VD G D
Sbjct: 83 DHSRFKLQPVDDDEGSD 99
Score = 79.2 bits (196), Expect = 9e-16
Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 30/72 (41%)
Query: 1729 GPLIVHCSAGVGRTGCFIVIDA------------------------------KEQYQFCY 1758
P++VHCSAGVGR+G FI +D ++QY +
Sbjct: 236 RPIVVHCSAGVGRSGTFITLDRILQQINTSDYVDIFGIVYAMRKERVWMVQTEQQYICIH 295
Query: 1759 HAALEYLGSFDH 1770
L L ++
Sbjct: 296 QCLLAVLEGKEN 307
Score = 61.5 bits (150), Expect = 7e-10
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 491 EIPARSLHVHIQKLMSMEVGDTSTGMELEFKKLSNIRAEPSRFISASLPCNKHKNRLVHI 550
I ++ H + + + D+ EF++L ++ + A LPCN+ KNR +I
Sbjct: 25 PILIKNFAEHYRLMSA----DSDFRFSEEFEELKHVGRDQPCTF-ADLPCNRPKNRFTNI 79
Query: 551 LPVESSRVCLTPVRGDGFIDFI 572
LP + SR L PV D D+I
Sbjct: 80 LPYDHSRFKLQPVDDDEGSDYI 101
Score = 36.1 bits (84), Expect = 0.092
Identities = 8/33 (24%), Positives = 11/33 (33%), Gaps = 2/33 (6%)
Query: 561 TPVRGDGFIDFIGQVHKTKEQFGQDGPITVHCS 593
P + F+ + PI VHCS
Sbjct: 213 VPNPPQTLVRFVRAFRDRIG--AEQRPIVVHCS 243
>2bzl_A Tyrosine-protein phosphatase, non-receptor type 14; PTPN14,
hydrolase; 1.65A {Homo sapiens}
Length = 325
Score = 475 bits (1224), Expect = e-154
Identities = 101/319 (31%), Positives = 157/319 (49%), Gaps = 11/319 (3%)
Query: 174 HAPSDPVEMRRLNFQTPGMVSHPPIPISRLAQHIENLKANDNLKFSQEYESIEP-GQQFT 232
H S V++ N MV +P+ + ++ K + EYE I
Sbjct: 5 HHHSSGVDLGTENLYFQSMVDATRVPMDERFRTLK--KKLEEGMVFTEYEQIPKKKANGI 62
Query: 233 WDHSSMEMNKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGY--RKHNAYVATQ 290
+ +++ N ++R V+ Y+ +RV L + YINA++ Y+ATQ
Sbjct: 63 FSTAALPENAERSRIREVVPYEENRVELIPTKE-NNTGYINASHIKVVVGGAEWHYIATQ 121
Query: 291 GPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTE----TYGHITVTLQ 346
GPL T DFW+MVWE I M+T EE R K +YWP G++ TYG VT +
Sbjct: 122 GPLPHTCHDFWQMVWEQGVNVIAMVTAEEEGGRTKSHRYWPKLGSKHSSATYGKFKVTTK 181
Query: 347 DVQELASYCIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGT 406
+ Y + + R + LQ+T WPDHG PE FL +L ++++ T
Sbjct: 182 FRTDSVCYATTGLKVKHLLSGQERTVWHLQYTDWPDHGCPEDVQGFLSYLEEIQSVRRHT 241
Query: 407 NSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNY 466
NS+ N P++VHCSAGVGRTG I+ + MI ++H++ V++ + LR QR +
Sbjct: 242 NSMLEGTKN-RHPPIVVHCSAGVGRTGVLILSELMIYCLEHNEKVEVPMMLRLLREQRMF 300
Query: 467 MVQTEDQYMFIHDALLEAV 485
M+QT QY F++ L++ +
Sbjct: 301 MIQTIAQYKFVYQVLIQFL 319
Score = 429 bits (1104), Expect = e-137
Identities = 93/289 (32%), Positives = 147/289 (50%), Gaps = 9/289 (3%)
Query: 715 DLFQTVRILRTQRPAMVQTESIEP-GQQFTWDHSSMEMNKAKNRYANVIAYDHSRVILST 773
+ F+T++ + + E I + +++ N ++R V+ Y+ +RV L
Sbjct: 33 ERFRTLKKKLEEGMVFTEYEQIPKKKANGIFSTAALPENAERSRIREVVPYEENRVELIP 92
Query: 774 VDGIPGSDYINANYCDGY--RKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEE 831
+ YINA++ Y+ATQGPL T DFW+MVWE I M+T EE
Sbjct: 93 TKE-NNTGYINASHIKVVVGGAEWHYIATQGPLPHTCHDFWQMVWEQGVNVIAMVTAEEE 151
Query: 832 RTRIKCDQYWPSRGTE----TYGHITVTLQDVQELASYCIRTFMINKGADSERREIKQLQ 887
R K +YWP G++ TYG VT + + Y + + R + LQ
Sbjct: 152 GGRTKSHRYWPKLGSKHSSATYGKFKVTTKFRTDSVCYATTGLKVKHLLSGQERTVWHLQ 211
Query: 888 FTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFI 947
+T WPDHG PE FL +L ++++ TNS+ N P++VHCSAGVGRTG I
Sbjct: 212 YTDWPDHGCPEDVQGFLSYLEEIQSVRRHTNSMLEGTKN-RHPPIVVHCSAGVGRTGVLI 270
Query: 948 VIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLEAV 996
+ + MI ++H++ V++ + LR QR +M+QT QY F++ L++ +
Sbjct: 271 LSELMIYCLEHNEKVEVPMMLRLLREQRMFMIQTIAQYKFVYQVLIQFL 319
Score = 219 bits (559), Expect = 1e-63
Identities = 60/214 (28%), Positives = 92/214 (42%), Gaps = 46/214 (21%)
Query: 1297 TEFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFI 1356
TE++++ +A F +A+LP N ++R+ ++P E +RV L P + + YINAS I
Sbjct: 49 TEYEQIPKKKANGI-FSTAALPENAERSRIREVVPYEENRVELIPTKE-NNTGYINASHI 106
Query: 1357 DGYRLRS--AYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------ 1402
+ YIATQGPL T DFW+M+WE ++ M+T +E GR
Sbjct: 107 KVVVGGAEWHYIATQGPLPHTCHDFWQMVWEQGVNVIAMVTAEEEGGRTKSHRYWPKLGS 166
Query: 1403 ----------------------YVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDG 1440
Y KV RT+ Q DWP+ G P+ G
Sbjct: 167 KHSSATYGKFKVTTKFRTDSVCYATTGLKVKHLLSGQERTVWHLQYTDWPDHGCPEDVQG 226
Query: 1441 FIDFIGQVHKTKEQF--------GQDGPITVHCS 1466
F+ ++ ++ + + PI VHCS
Sbjct: 227 FLSYLEEIQSVRRHTNSMLEGTKNRHPPIVVHCS 260
Score = 188 bits (480), Expect = 5e-53
Identities = 45/152 (29%), Positives = 70/152 (46%), Gaps = 12/152 (7%)
Query: 1503 QEKCHQYWPSE----RSIRYEWFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQLI 1558
+ K H+YWP S Y F V + Y KV RT+ Q
Sbjct: 154 RTKSHRYWPKLGSKHSSATYGKFKVTTKFRTDSVCYATTGLKVKHLLSGQERTVWHLQYT 213
Query: 1559 DWPEQGVPKSGDGFIDFIGQVHKTKEQF--------GQDGPITVHCSAGVGRTGVFITLS 1610
DWP+ G P+ GF+ ++ ++ + + PI VHCSAGVGRTGV I
Sbjct: 214 DWPDHGCPEDVQGFLSYLEEIQSVRRHTNSMLEGTKNRHPPIVVHCSAGVGRTGVLILSE 273
Query: 1611 IVLERMQYEGVIDLFQTVRILRTQRPAMVQTE 1642
+++ +++ +++ +R+LR QR M+QT
Sbjct: 274 LMIYCLEHNEKVEVPMMLRLLREQRMFMIQTI 305
Score = 112 bits (282), Expect = 9e-27
Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 8/82 (9%)
Query: 662 DGFIDFIGQVHKTKEQF--------GQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGV 713
GF+ ++ ++ + + PI VHCSAGVGRTGV I +++ +++
Sbjct: 225 QGFLSYLEEIQSVRRHTNSMLEGTKNRHPPIVVHCSAGVGRTGVLILSELMIYCLEHNEK 284
Query: 714 IDLFQTVRILRTQRPAMVQTES 735
+++ +R+LR QR M+QT +
Sbjct: 285 VEVPMMLRLLREQRMFMIQTIA 306
Score = 78.5 bits (194), Expect = 2e-15
Identities = 15/85 (17%), Positives = 28/85 (32%), Gaps = 2/85 (2%)
Query: 575 VHKTKEQFGQDGPITVHCSRLAQHIENL-KANDNLKFSQEYESIEP-GQQFTWDHSSMEM 632
V E + + + L K + EYE I + +++
Sbjct: 11 VDLGTENLYFQSMVDATRVPMDERFRTLKKKLEEGMVFTEYEQIPKKKANGIFSTAALPE 70
Query: 633 NKAKNRYANVIAYDHSRVILSTVDG 657
N ++R V+ Y+ +RV L
Sbjct: 71 NAERSRIREVVPYEENRVELIPTKE 95
Score = 74.3 bits (183), Expect = 4e-14
Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 30/93 (32%)
Query: 1707 ICLVLLFILKSSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDA---------------- 1750
+ + ++ G P++VHCSAGVGRTG I+ +
Sbjct: 231 LEEIQSVRRHTNSMLEGTKNRHPPIVVHCSAGVGRTGVLILSELMIYCLEHNEKVEVPMM 290
Query: 1751 --------------KEQYQFCYHAALEYLGSFD 1769
QY+F Y +++L +
Sbjct: 291 LRLLREQRMFMIQTIAQYKFVYQVLIQFLQNSR 323
Score = 56.1 bits (136), Expect = 4e-08
Identities = 18/88 (20%), Positives = 38/88 (43%), Gaps = 14/88 (15%)
Query: 490 TEIPARSLHVHIQKLMSMEVGDTSTGMELEFKKLSNIRAEPSRFISASLPCNKHKNRLVH 549
T +P ++K + + E++++ +A F +A+LP N ++R+
Sbjct: 27 TRVPMDERFRTLKKKLE------EGMVFTEYEQIPKKKANGI-FSTAALPENAERSRIRE 79
Query: 550 ILPVESSRVCLTPVRGDG-------FID 570
++P E +RV L P + + I
Sbjct: 80 VVPYEENRVELIPTKENNTGYINASHIK 107
Score = 35.0 bits (81), Expect = 0.22
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 8/41 (19%)
Query: 561 TPVRGDGFIDFIGQVHKTKEQF--------GQDGPITVHCS 593
P GF+ ++ ++ + + PI VHCS
Sbjct: 220 CPEDVQGFLSYLEEIQSVRRHTNSMLEGTKNRHPPIVVHCS 260
>2hc1_A Receptor-type tyrosine-protein phosphatase beta; protein tyrosine
phosphatase, WPD-loop, sulfamic acid, inhibitor, drug
design, hydrolase; 1.30A {Homo sapiens} PDB: 2h03_A
2hc2_A 2i4g_A* 2h04_A* 2h02_A 2i3u_A 2i3r_A 2i4e_A*
2i4h_A* 2i5x_A* 2ahs_A
Length = 291
Score = 468 bits (1206), Expect = e-152
Identities = 115/297 (38%), Positives = 167/297 (56%), Gaps = 17/297 (5%)
Query: 194 SHPPIPISRLAQHIENLKANDNLKFSQEYESI-EPGQQFTWDHSSMEMNKAKNRYANVIA 252
+ PI I++ H L+A+ N S+EYE + + G+ + D + + N+ KNRY N++
Sbjct: 5 TSCPIKINQFEGHFMKLQADSNYLLSKEYEELKDVGRNQSCDIALLPENRGKNRYNNILP 64
Query: 253 YDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTI 312
YD +RV LS GSDYINA+Y G Y+ TQGPL T DFW+MVWE I
Sbjct: 65 YDATRVKLS-----GGSDYINASYIPGNNFRREYIVTQGPLPGTKDDFWKMVWEQNVHNI 119
Query: 313 VMMTKLEERTRIKCDQYWPS-RGTETYGHITVTLQDVQELASYCIRTFMI-NKGADSERR 370
VM+T+ E+ R+KCD YWP+ + + YG + + + L + IR F I + R
Sbjct: 120 VMVTQCVEKGRVKCDHYWPADQDSLYYGDLILQMLSESVLPEWTIREFKICGEEQLDAHR 179
Query: 371 EIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVG 430
I+ +T WPDHGVPE + F+R VR + + GP +VHCSAGVG
Sbjct: 180 LIRHFHYTVWPDHGVPETTQSLIQFVRTVR---------DYINRSPGAGPTVVHCSAGVG 230
Query: 431 RTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLEAVLC 487
RTG FI +D +++++ +VDIYG V LR R +MVQTE QY+++H + + +
Sbjct: 231 RTGTFIALDRILQQLDSKDSVDIYGAVHDLRLHRVHMVQTECQYVYLHQCVRDVLRA 287
Score = 427 bits (1099), Expect = e-137
Identities = 105/268 (39%), Positives = 151/268 (56%), Gaps = 17/268 (6%)
Query: 734 ESI-EPGQQFTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYR 792
E + + G+ + D + + N+ KNRY N++ YD +RV LS GSDYINA+Y G
Sbjct: 34 EELKDVGRNQSCDIALLPENRGKNRYNNILPYDATRVKLS-----GGSDYINASYIPGNN 88
Query: 793 KHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPS-RGTETYGH 851
Y+ TQGPL T DFW+MVWE IVM+T+ E+ R+KCD YWP+ + + YG
Sbjct: 89 FRREYIVTQGPLPGTKDDFWKMVWEQNVHNIVMVTQCVEKGRVKCDHYWPADQDSLYYGD 148
Query: 852 ITVTLQDVQELASYCIRTFMI-NKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRV 910
+ + + L + IR F I + R I+ +T WPDHGVPE + F+R V
Sbjct: 149 LILQMLSESVLPEWTIREFKICGEEQLDAHRLIRHFHYTVWPDHGVPETTQSLIQFVRTV 208
Query: 911 RAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTC 970
R + + GP +VHCSAGVGRTG FI +D +++++ +VDIYG V
Sbjct: 209 R---------DYINRSPGAGPTVVHCSAGVGRTGTFIALDRILQQLDSKDSVDIYGAVHD 259
Query: 971 LRAQRNYMVQTEDQYMFIHDALLEAVLC 998
LR R +MVQTE QY+++H + + +
Sbjct: 260 LRLHRVHMVQTECQYVYLHQCVRDVLRA 287
Score = 223 bits (571), Expect = 1e-65
Identities = 69/203 (33%), Positives = 96/203 (47%), Gaps = 38/203 (18%)
Query: 1296 KTEFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASF 1355
E+++L ++ S A LP N+ KNR +ILP +++RV L+ GSDYINAS+
Sbjct: 30 SKEYEELKDVGRNQS-CDIALLPENRGKNRYNNILPYDATRVKLSG-----GSDYINASY 83
Query: 1356 IDGYRLRSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------- 1402
I G R YI TQGPL T +DFW+M+WE N +VM+T+ E GR
Sbjct: 84 IPGNNFRREYIVTQGPLPGTKDDFWKMVWEQNVHNIVMVTQCVEKGRVKCDHYWPADQDS 143
Query: 1403 ------------------YVLREFKVTDARDA-TSRTLRQFQLIDWPEQGVPKSGDGFID 1443
+ +REFK+ R +R F WP+ GVP++ I
Sbjct: 144 LYYGDLILQMLSESVLPEWTIREFKICGEEQLDAHRLIRHFHYTVWPDHGVPETTQSLIQ 203
Query: 1444 FIGQVHKTKEQFGQDGPITVHCS 1466
F+ V + GP VHCS
Sbjct: 204 FVRTVRDYINRSPGAGPTVVHCS 226
Score = 192 bits (491), Expect = 7e-55
Identities = 51/142 (35%), Positives = 80/142 (56%), Gaps = 2/142 (1%)
Query: 1503 QEKCHQYWPSER-SIRYEWFVVEPIAEYNMPQYVLREFKVTDARDA-TSRTLRQFQLIDW 1560
+ KC YWP+++ S+ Y +++ ++E +P++ +REFK+ R +R F W
Sbjct: 130 RVKCDHYWPADQDSLYYGDLILQMLSESVLPEWTIREFKICGEEQLDAHRLIRHFHYTVW 189
Query: 1561 PEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEG 1620
P+ GVP++ I F+ V + GP VHCSAGVGRTG FI L +L+++ +
Sbjct: 190 PDHGVPETTQSLIQFVRTVRDYINRSPGAGPTVVHCSAGVGRTGTFIALDRILQQLDSKD 249
Query: 1621 VIDLFQTVRILRTQRPAMVQTE 1642
+D++ V LR R MVQTE
Sbjct: 250 SVDIYGAVHDLRLHRVHMVQTE 271
Score = 119 bits (300), Expect = 2e-29
Identities = 32/80 (40%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 657 GIPGR-DGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVID 715
G+P I F+ V + GP VHCSAGVGRTG FI L +L+++ + +D
Sbjct: 193 GVPETTQSLIQFVRTVRDYINRSPGAGPTVVHCSAGVGRTGTFIALDRILQQLDSKDSVD 252
Query: 716 LFQTVRILRTQRPAMVQTES 735
++ V LR R MVQTE
Sbjct: 253 IYGAVHDLRLHRVHMVQTEC 272
Score = 93.8 bits (234), Expect = 8e-21
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 12/89 (13%)
Query: 587 PITVHCSRLAQHIENLKANDNLKFSQEYESI-EPGQQFTWDHSSMEMNKAKNRYANVIAY 645
PI + ++ H L+A+ N S+EYE + + G+ + D + + N+ KNRY N++ Y
Sbjct: 8 PIKI--NQFEGHFMKLQADSNYLLSKEYEELKDVGRNQSCDIALLPENRGKNRYNNILPY 65
Query: 646 DHSRVIL---------STVDGIPGRDGFI 665
D +RV L S + G R +I
Sbjct: 66 DATRVKLSGGSDYINASYIPGNNFRREYI 94
Score = 72.7 bits (179), Expect = 1e-13
Identities = 19/71 (26%), Positives = 26/71 (36%), Gaps = 30/71 (42%)
Query: 1729 GPLIVHCSAGVGRTGCFIVIDA------------------------------KEQYQFCY 1758
GP +VHCSAGVGRTG FI +D + QY + +
Sbjct: 219 GPTVVHCSAGVGRTGTFIALDRILQQLDSKDSVDIYGAVHDLRLHRVHMVQTECQYVYLH 278
Query: 1759 HAALEYLGSFD 1769
+ L +
Sbjct: 279 QCVRDVLRARK 289
Score = 56.5 bits (137), Expect = 2e-08
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 492 IPARSLHVHIQKLMSMEVGDTSTGMELEFKKLSNIRAEPSRFISASLPCNKHKNRLVHIL 551
I H KL + D++ + E+++L ++ S A LP N+ KNR +IL
Sbjct: 9 IKINQFEGHFMKLQA----DSNYLLSKEYEELKDVGRNQS-CDIALLPENRGKNRYNNIL 63
Query: 552 PVESSRVCLTP 562
P +++RV L+
Sbjct: 64 PYDATRVKLSG 74
Score = 42.6 bits (101), Expect = 7e-04
Identities = 10/33 (30%), Positives = 12/33 (36%)
Query: 561 TPVRGDGFIDFIGQVHKTKEQFGQDGPITVHCS 593
P I F+ V + GP VHCS
Sbjct: 194 VPETTQSLIQFVRTVRDYINRSPGAGPTVVHCS 226
>2i1y_A Receptor-type tyrosine-protein phosphatase; receptor-type protein
tyrosine phosphatase precursor, phosph structural
genomics, PSI; 2.23A {Homo sapiens} PDB: 2qep_A
Length = 301
Score = 466 bits (1201), Expect = e-151
Identities = 96/302 (31%), Positives = 146/302 (48%), Gaps = 16/302 (5%)
Query: 197 PIPISRLAQHIENLKANDNLKFSQEYESIE--PGQQFTWDHSSMEMNKAKNRYANVIAYD 254
I + + + ++E++++ + T + E N KNR+ + + YD
Sbjct: 10 DISTGHMILAYMEDHLRNRDRLAKEWQALCAYQAEPNTCATAQGEGNIKKNRHPDFLPYD 69
Query: 255 HSRVILSTVDGIPGSDYINANY-CDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIV 313
H+R+ L SDYINA+ + + AY+ATQGPL T+ DFW+MVWE IV
Sbjct: 70 HARIKLKVESSPSRSDYINASPIIEHDPRMPAYIATQGPLSHTIADFWQMVWESGCTVIV 129
Query: 314 MMTKLEERTRIKCDQYWPSRGTETYGHITVTL-QDVQELASYCIRTFMINKGADSERREI 372
M+T L E +CD+YWP G Y V L + + +R+F + E R +
Sbjct: 130 MLTPLVEDGVKQCDRYWPDEGASLYHVYEVNLVSEHIWCEDFLVRSFYLKNVQTQETRTL 189
Query: 373 KQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRT 432
Q F +WP G P P L F R+V G + P+IVHCS G GRT
Sbjct: 190 TQFHFLSWPAEGTPASTRPLLDFRRKVNKCYRGRS-----------CPIIVHCSDGAGRT 238
Query: 433 GCFIVIDAMIERI-KHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLEAVLCGNTE 491
G +I+ID ++ R+ K K +DI + +R QR +V+++DQ+ F A+ E V
Sbjct: 239 GTYILIDMVLNRMAKGVKEIDIAATLEHVRDQRPGLVRSKDQFEFALTAVAEEVNAILKA 298
Query: 492 IP 493
+P
Sbjct: 299 LP 300
Score = 440 bits (1134), Expect = e-142
Identities = 94/270 (34%), Positives = 135/270 (50%), Gaps = 14/270 (5%)
Query: 738 PGQQFTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANY-CDGYRKHNA 796
+ T + E N KNR+ + + YDH+R+ L SDYINA+ + + A
Sbjct: 42 QAEPNTCATAQGEGNIKKNRHPDFLPYDHARIKLKVESSPSRSDYINASPIIEHDPRMPA 101
Query: 797 YVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGHITVTL 856
Y+ATQGPL T+ DFW+MVWE IVM+T L E +CD+YWP G Y V L
Sbjct: 102 YIATQGPLSHTIADFWQMVWESGCTVIVMLTPLVEDGVKQCDRYWPDEGASLYHVYEVNL 161
Query: 857 -QDVQELASYCIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNP 915
+ + +R+F + E R + Q F +WP G P P L F R+V
Sbjct: 162 VSEHIWCEDFLVRSFYLKNVQTQETRTLTQFHFLSWPAEGTPASTRPLLDFRRKVNKCYR 221
Query: 916 GTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERI-KHDKTVDIYGHVTCLRAQ 974
G + P+IVHCS G GRTG +I+ID ++ R+ K K +DI + +R Q
Sbjct: 222 GRS-----------CPIIVHCSDGAGRTGTYILIDMVLNRMAKGVKEIDIAATLEHVRDQ 270
Query: 975 RNYMVQTEDQYMFIHDALLEAVLCGNTEIP 1004
R +V+++DQ+ F A+ E V +P
Sbjct: 271 RPGLVRSKDQFEFALTAVAEEVNAILKALP 300
Score = 229 bits (587), Expect = 1e-67
Identities = 70/201 (34%), Positives = 97/201 (48%), Gaps = 34/201 (16%)
Query: 1298 EFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFID 1357
E++ L +AEP+ +A N KNR LP + +R+ L SDYINAS I
Sbjct: 34 EWQALCAYQAEPNTCATAQGEGNIKKNRHPDFLPYDHARIKLKVESSPSRSDYINASPII 93
Query: 1358 GYRLRS-AYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR-------------- 1402
+ R AYIATQGPL+ T DFW+M+WE T++VMLT L E G
Sbjct: 94 EHDPRMPAYIATQGPLSHTIADFWQMVWESGCTVIVMLTPLVEDGVKQCDRYWPDEGASL 153
Query: 1403 -----------------YVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFI 1445
+++R F + + + +RTL QF + WP +G P S +DF
Sbjct: 154 YHVYEVNLVSEHIWCEDFLVRSFYLKNVQTQETRTLTQFHFLSWPAEGTPASTRPLLDFR 213
Query: 1446 GQVHKTKEQFGQDGPITVHCS 1466
+V+K G+ PI VHCS
Sbjct: 214 RKVNKCYR--GRSCPIIVHCS 232
Score = 188 bits (479), Expect = 4e-53
Identities = 49/142 (34%), Positives = 81/142 (57%), Gaps = 4/142 (2%)
Query: 1503 QEKCHQYWPSERSIRYEWFVVEPIAEYNM-PQYVLREFKVTDARDATSRTLRQFQLIDWP 1561
++C +YWP E + Y + V ++E+ +++R F + + + +RTL QF + WP
Sbjct: 139 VKQCDRYWPDEGASLYHVYEVNLVSEHIWCEDFLVRSFYLKNVQTQETRTLTQFHFLSWP 198
Query: 1562 EQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERM-QYEG 1620
+G P S +DF +V+K G+ PI VHCS G GRTG +I + +VL RM +
Sbjct: 199 AEGTPASTRPLLDFRRKVNKCYR--GRSCPIIVHCSDGAGRTGTYILIDMVLNRMAKGVK 256
Query: 1621 VIDLFQTVRILRTQRPAMVQTE 1642
ID+ T+ +R QRP +V+++
Sbjct: 257 EIDIAATLEHVRDQRPGLVRSK 278
Score = 110 bits (278), Expect = 2e-26
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 657 GIPGR-DGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERM-QYEGVI 714
G P +DF +V+K G+ PI VHCS G GRTG +I + +VL RM + I
Sbjct: 201 GTPASTRPLLDFRRKVNKCYR--GRSCPIIVHCSDGAGRTGTYILIDMVLNRMAKGVKEI 258
Query: 715 DLFQTVRILRTQRPAMVQTES 735
D+ T+ +R QRP +V+++
Sbjct: 259 DIAATLEHVRDQRPGLVRSKD 279
Score = 90.8 bits (226), Expect = 1e-19
Identities = 14/78 (17%), Positives = 31/78 (39%), Gaps = 4/78 (5%)
Query: 587 PITVHCSRLAQHIENLKANDNLKFSQEYESIE--PGQQFTWDHSSMEMNKAKNRYANVIA 644
I+ + + + ++E++++ + T + E N KNR+ + +
Sbjct: 10 DIST--GHMILAYMEDHLRNRDRLAKEWQALCAYQAEPNTCATAQGEGNIKKNRHPDFLP 67
Query: 645 YDHSRVILSTVDGIPGRD 662
YDH+R+ L D
Sbjct: 68 YDHARIKLKVESSPSRSD 85
Score = 71.1 bits (175), Expect = 4e-13
Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 31/68 (45%)
Query: 1729 GPLIVHCSAGVGRTGCFIVIDA-------------------------------KEQYQFC 1757
P+IVHCS G GRTG +I+ID K+Q++F
Sbjct: 225 CPIIVHCSDGAGRTGTYILIDMVLNRMAKGVKEIDIAATLEHVRDQRPGLVRSKDQFEFA 284
Query: 1758 YHAALEYL 1765
A E +
Sbjct: 285 LTAVAEEV 292
Score = 66.1 bits (162), Expect = 2e-11
Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 4/84 (4%)
Query: 489 NTEIPARSLHVHIQKLMSMEVGDTSTGMELEFKKLSNIRAEPSRFISASLPCNKHKNRLV 548
N +I + + + + E++ L +AEP+ +A N KNR
Sbjct: 8 NMDISTGHMILAYMEDHL----RNRDRLAKEWQALCAYQAEPNTCATAQGEGNIKKNRHP 63
Query: 549 HILPVESSRVCLTPVRGDGFIDFI 572
LP + +R+ L D+I
Sbjct: 64 DFLPYDHARIKLKVESSPSRSDYI 87
Score = 37.6 bits (88), Expect = 0.031
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 561 TPVRGDGFIDFIGQVHKTKEQFGQDGPITVHCS 593
TP +DF +V+K G+ PI VHCS
Sbjct: 202 TPASTRPLLDFRRKVNKCYR--GRSCPIIVHCS 232
>2oc3_A Tyrosine-protein phosphatase non-receptor type 18; protein tyrosine
phosphatase, human, structural genomics, structural
genomics consortium, SGC; 1.50A {Homo sapiens}
Length = 303
Score = 460 bits (1185), Expect = e-149
Identities = 97/309 (31%), Positives = 138/309 (44%), Gaps = 27/309 (8%)
Query: 191 GMVSHPPIPIS--RLAQHIENLKANDNLKFSQEYESIEPGQQ-------FTWDHSSMEMN 241
G + P IP S + +E + + E+ I+ + S N
Sbjct: 1 GPLGSPGIPDSARSFLERLEARGGREGAVLAGEFSDIQACSAAWKADGVCSTVAGSRPEN 60
Query: 242 KAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDFW 301
KNRY +V+ YD +RVILS + SDYIN N+ G AY+ATQGPL TL DFW
Sbjct: 61 VRKNRYKDVLPYDQTRVILSLLQEEGHSDYINGNFIRGVDGSLAYIATQGPLPHTLLDFW 120
Query: 302 RMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG-TETYGHITVTLQDVQEL-ASYCIRTF 359
R+VWE I+M + E R +C++YW G +TL + L +RT
Sbjct: 121 RLVWEFGVKVILMACREIENGRKRCERYWAQEQEPLQTGLFCITLIKEKWLNEDIMLRTL 180
Query: 360 MINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVG 419
+ E R + QLQ+ +WPD GVP P L + R +
Sbjct: 181 KVTFQ--KESRSVYQLQYMSWPDRGVPSSPDHMLAMVEEARRLQGSGP-----------E 227
Query: 420 PLIVHCSAGVGRTGCFIVIDAMIERIKHDK---TVDIYGHVTCLRAQRNYMVQTEDQYMF 476
PL VHCSAG GRTG +D + + + ++ V +R QR VQTE+QY F
Sbjct: 228 PLCVHCSAGCGRTGVLCTVDYVRQLLLTQMIPPDFSLFDVVLKMRKQRPAAVQTEEQYRF 287
Query: 477 IHDALLEAV 485
++ + +
Sbjct: 288 LYHTVAQMF 296
Score = 422 bits (1086), Expect = e-135
Identities = 89/270 (32%), Positives = 126/270 (46%), Gaps = 18/270 (6%)
Query: 732 QTESIEPGQQFTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGY 791
+ + + + S N KNRY +V+ YD +RVILS + SDYIN N+ G
Sbjct: 40 CSAAWKADGVCSTVAGSRPENVRKNRYKDVLPYDQTRVILSLLQEEGHSDYINGNFIRGV 99
Query: 792 RKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG-TETYG 850
AY+ATQGPL TL DFWR+VWE I+M + E R +C++YW G
Sbjct: 100 DGSLAYIATQGPLPHTLLDFWRLVWEFGVKVILMACREIENGRKRCERYWAQEQEPLQTG 159
Query: 851 HITVTLQDVQEL-ASYCIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRR 909
+TL + L +RT + E R + QLQ+ +WPD GVP P L +
Sbjct: 160 LFCITLIKEKWLNEDIMLRTLKVTFQ--KESRSVYQLQYMSWPDRGVPSSPDHMLAMVEE 217
Query: 910 VRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDK---TVDIYG 966
R + PL VHCSAG GRTG +D + + + ++
Sbjct: 218 ARRLQGSGP-----------EPLCVHCSAGCGRTGVLCTVDYVRQLLLTQMIPPDFSLFD 266
Query: 967 HVTCLRAQRNYMVQTEDQYMFIHDALLEAV 996
V +R QR VQTE+QY F++ + +
Sbjct: 267 VVLKMRKQRPAAVQTEEQYRFLYHTVAQMF 296
Score = 223 bits (570), Expect = 3e-65
Identities = 64/206 (31%), Positives = 91/206 (44%), Gaps = 41/206 (19%)
Query: 1298 EFKKLSNIRAEPSR-----FISASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYIN 1352
EF + A ++ S P N KNR +LP + +RV L+ ++ SDYIN
Sbjct: 33 EFSDIQACSAAWKADGVCSTVAGSRPENVRKNRYKDVLPYDQTRVILSLLQEEGHSDYIN 92
Query: 1353 ASFIDGYRLRSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR---------- 1402
+FI G AYIATQGPL T DFWR++WE +++M + E GR
Sbjct: 93 GNFIRGVDGSLAYIATQGPLPHTLLDFWRLVWEFGVKVILMACREIENGRKRCERYWAQE 152
Query: 1403 ----------------------YVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDG 1440
+LR KVT SR++ Q Q + WP++GVP S D
Sbjct: 153 QEPLQTGLFCITLIKEKWLNEDIMLRTLKVT--FQKESRSVYQLQYMSWPDRGVPSSPDH 210
Query: 1441 FIDFIGQVHKTKEQFGQDGPITVHCS 1466
+ + + + Q P+ VHCS
Sbjct: 211 MLAMVEEARRL--QGSGPEPLCVHCS 234
Score = 178 bits (454), Expect = 9e-50
Identities = 50/145 (34%), Positives = 77/145 (53%), Gaps = 9/145 (6%)
Query: 1503 QEKCHQYWPSERS-IRYEWFVVEPIAEYNMPQ-YVLREFKVTDARDATSRTLRQFQLIDW 1560
+++C +YW E+ ++ F + I E + + +LR KVT SR++ Q Q + W
Sbjct: 142 RKRCERYWAQEQEPLQTGLFCITLIKEKWLNEDIMLRTLKVT--FQKESRSVYQLQYMSW 199
Query: 1561 PEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEG 1620
P++GVP S D + + + + Q P+ VHCSAG GRTGV T+ V + + +
Sbjct: 200 PDRGVPSSPDHMLAMVEEARRL--QGSGPEPLCVHCSAGCGRTGVLCTVDYVRQLLLTQM 257
Query: 1621 V---IDLFQTVRILRTQRPAMVQTE 1642
+ LF V +R QRPA VQTE
Sbjct: 258 IPPDFSLFDVVLKMRKQRPAAVQTE 282
Score = 109 bits (275), Expect = 4e-26
Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 657 GIPGR-DGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGV-- 713
G+P D + + + + Q P+ VHCSAG GRTGV T+ V + + + +
Sbjct: 203 GVPSSPDHMLAMVEEARRL--QGSGPEPLCVHCSAGCGRTGVLCTVDYVRQLLLTQMIPP 260
Query: 714 -IDLFQTVRILRTQRPAMVQTES 735
LF V +R QRPA VQTE
Sbjct: 261 DFSLFDVVLKMRKQRPAAVQTEE 283
Score = 95.8 bits (239), Expect = 2e-21
Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 9/83 (10%)
Query: 587 PITVHCSRLAQHIENLKANDNLKFSQEYESIEPGQQ-------FTWDHSSMEMNKAKNRY 639
P + + +E + + E+ I+ + S N KNRY
Sbjct: 9 PDSAR--SFLERLEARGGREGAVLAGEFSDIQACSAAWKADGVCSTVAGSRPENVRKNRY 66
Query: 640 ANVIAYDHSRVILSTVDGIPGRD 662
+V+ YD +RVILS + D
Sbjct: 67 KDVLPYDQTRVILSLLQEEGHSD 89
Score = 72.7 bits (179), Expect = 1e-13
Identities = 20/72 (27%), Positives = 24/72 (33%), Gaps = 33/72 (45%)
Query: 1729 GPLIVHCSAGVGRTGCFIVIDA---------------------------------KEQYQ 1755
PL VHCSAG GRTG +D +EQY+
Sbjct: 227 EPLCVHCSAGCGRTGVLCTVDYVRQLLLTQMIPPDFSLFDVVLKMRKQRPAAVQTEEQYR 286
Query: 1756 FCYHAALEYLGS 1767
F YH + S
Sbjct: 287 FLYHTVAQMFCS 298
Score = 59.6 bits (145), Expect = 3e-09
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 488 GNTEIPARSLHVHIQKLMSMEVGDTSTGMELEFKKLSNIRAEPSR-----FISASLPCNK 542
G+ IP S +++L + G + EF + A ++ S P N
Sbjct: 4 GSPGIPD-SARSFLERLEARG-GREGAVLAGEFSDIQACSAAWKADGVCSTVAGSRPENV 61
Query: 543 HKNRLVHILPVESSRVCLTPVRGDGFIDFI 572
KNR +LP + +RV L+ ++ +G D+I
Sbjct: 62 RKNRYKDVLPYDQTRVILSLLQEEGHSDYI 91
Score = 36.9 bits (86), Expect = 0.053
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 561 TPVRGDGFIDFIGQVHKTKEQFGQDGPITVHCS 593
P D + + + + Q P+ VHCS
Sbjct: 204 VPSSPDHMLAMVEEARRL--QGSGPEPLCVHCS 234
>1l8k_A T-cell protein-tyrosine phosphatase; hydrolase; 2.56A {Homo
sapiens} SCOP: c.45.1.2
Length = 314
Score = 459 bits (1184), Expect = e-149
Identities = 94/326 (28%), Positives = 151/326 (46%), Gaps = 21/326 (6%)
Query: 201 SRLAQHIENLKANDNLKFSQEYESI-EPGQQFTWDHSSMEMNKAKNRYANVIAYDHSRVI 259
+ + + E L + ++ Y I + + N+ +NRY +V YDHSRV
Sbjct: 3 TTIEREFEEL--DTQRRWQPLYLEIRNESHDYPHRVAKFPENRNRNRYRDVSPYDHSRVK 60
Query: 260 LSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLE 319
L + +DYINA+ D +Y+ TQGPL T FW MVW+ ++ +VM+ ++
Sbjct: 61 LQNAE----NDYINASLVDIEEAQRSYILTQGPLPNTCCHFWLMVWQQKTKAVVMLNRIV 116
Query: 320 ERTRIKCDQYWPSRGTET---YGHITVTLQDVQELASYCIRTFMINKGADSERREIKQLQ 376
E+ +KC QYWP+ E +V L + Y + + E R I
Sbjct: 117 EKESVKCAQYWPTDDQEMLFKETGFSVKLLSEDVKSYYTVHLLQLENINSGETRTISHFH 176
Query: 377 FTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFI 436
+T WPD GVPE PA FL FL +VR GP ++HCSAG+GR+G F
Sbjct: 177 YTTWPDFGVPESPASFLNFLFKVRESGSLNPD---------HGPAVIHCSAGIGRSGTFS 227
Query: 437 VIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLEAVLC--GNTEIPA 494
++D + ++ ++I + +R R ++QT DQ F + A++E C G++ I
Sbjct: 228 LVDTCLVLMEKGDDINIKQVLLNMRKYRMGLIQTPDQLRFSYMAIIEGAKCIKGDSSIQK 287
Query: 495 RSLHVHIQKLMSMEVGDTSTGMELEF 520
R + + L + M ++
Sbjct: 288 RWKELSKEDLSPAFDHSPNKIMTEKY 313
Score = 433 bits (1115), Expect = e-139
Identities = 89/292 (30%), Positives = 140/292 (47%), Gaps = 18/292 (6%)
Query: 737 EPGQQFTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNA 796
+ + N+ +NRY +V YDHSRV L + +DYINA+ D +
Sbjct: 27 NESHDYPHRVAKFPENRNRNRYRDVSPYDHSRVKLQNAE----NDYINASLVDIEEAQRS 82
Query: 797 YVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTET---YGHIT 853
Y+ TQGPL T FW MVW+ ++ +VM+ ++ E+ +KC QYWP+ E +
Sbjct: 83 YILTQGPLPNTCCHFWLMVWQQKTKAVVMLNRIVEKESVKCAQYWPTDDQEMLFKETGFS 142
Query: 854 VTLQDVQELASYCIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAM 913
V L + Y + + E R I +T WPD GVPE PA FL FL +VR
Sbjct: 143 VKLLSEDVKSYYTVHLLQLENINSGETRTISHFHYTTWPDFGVPESPASFLNFLFKVRES 202
Query: 914 NPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRA 973
GP ++HCSAG+GR+G F ++D + ++ ++I + +R
Sbjct: 203 GSLNPD---------HGPAVIHCSAGIGRSGTFSLVDTCLVLMEKGDDINIKQVLLNMRK 253
Query: 974 QRNYMVQTEDQYMFIHDALLEAVLC--GNTEIPASSQMITRKDDPTVSLQDP 1023
R ++QT DQ F + A++E C G++ I + ++++D P
Sbjct: 254 YRMGLIQTPDQLRFSYMAIIEGAKCIKGDSSIQKRWKELSKEDLSPAFDHSP 305
Score = 222 bits (568), Expect = 6e-65
Identities = 53/202 (26%), Positives = 87/202 (43%), Gaps = 38/202 (18%)
Query: 1298 EFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFID 1357
+ ++ N + A P N+++NR + P + SRV L +DYINAS +D
Sbjct: 21 LYLEIRN-ESHDYPHRVAKFPENRNRNRYRDVSPYDHSRVKLQN----AENDYINASLVD 75
Query: 1358 GYRLRSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR--------------- 1402
+ +YI TQGPL +T FW M+W+ + VVML ++ E
Sbjct: 76 IEEAQRSYILTQGPLPNTCCHFWLMVWQQKTKAVVMLNRIVEKESVKCAQYWPTDDQEML 135
Query: 1403 ------------------YVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDF 1444
Y + ++ + +RT+ F WP+ GVP+S F++F
Sbjct: 136 FKETGFSVKLLSEDVKSYYTVHLLQLENINSGETRTISHFHYTTWPDFGVPESPASFLNF 195
Query: 1445 IGQVHKTKEQFGQDGPITVHCS 1466
+ +V ++ GP +HCS
Sbjct: 196 LFKVRESGSLNPDHGPAVIHCS 217
Score = 194 bits (494), Expect = 5e-55
Identities = 41/143 (28%), Positives = 72/143 (50%), Gaps = 3/143 (2%)
Query: 1503 QEKCHQYWPSERS---IRYEWFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQLID 1559
KC QYWP++ + F V+ ++E Y + ++ + +RT+ F
Sbjct: 120 SVKCAQYWPTDDQEMLFKETGFSVKLLSEDVKSYYTVHLLQLENINSGETRTISHFHYTT 179
Query: 1560 WPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYE 1619
WP+ GVP+S F++F+ +V ++ GP +HCSAG+GR+G F + L M+
Sbjct: 180 WPDFGVPESPASFLNFLFKVRESGSLNPDHGPAVIHCSAGIGRSGTFSLVDTCLVLMEKG 239
Query: 1620 GVIDLFQTVRILRTQRPAMVQTE 1642
I++ Q + +R R ++QT
Sbjct: 240 DDINIKQVLLNMRKYRMGLIQTP 262
Score = 118 bits (297), Expect = 6e-29
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 657 GIPGR-DGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVID 715
G+P F++F+ +V ++ GP +HCSAG+GR+G F + L M+ I+
Sbjct: 184 GVPESPASFLNFLFKVRESGSLNPDHGPAVIHCSAGIGRSGTFSLVDTCLVLMEKGDDIN 243
Query: 716 LFQTVRILRTQRPAMVQTES 735
+ Q + +R R ++QT
Sbjct: 244 IKQVLLNMRKYRMGLIQTPD 263
Score = 79.6 bits (197), Expect = 6e-16
Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 13/84 (15%)
Query: 593 SRLAQHIENLKANDNLKFSQEYESI-EPGQQFTWDHSSMEMNKAKNRYANVIAYDHSRVI 651
+ + + E L + ++ Y I + + N+ +NRY +V YDHSRV
Sbjct: 3 TTIEREFEEL--DTQRRWQPLYLEIRNESHDYPHRVAKFPENRNRNRYRDVSPYDHSRVK 60
Query: 652 L----------STVDGIPGRDGFI 665
L S VD + +I
Sbjct: 61 LQNAENDYINASLVDIEEAQRSYI 84
Score = 69.6 bits (171), Expect = 1e-12
Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 30/67 (44%)
Query: 1729 GPLIVHCSAGVGRTGCFIVIDA------------------------------KEQYQFCY 1758
GP ++HCSAG+GR+G F ++D +Q +F Y
Sbjct: 210 GPAVIHCSAGIGRSGTFSLVDTCLVLMEKGDDINIKQVLLNMRKYRMGLIQTPDQLRFSY 269
Query: 1759 HAALEYL 1765
A +E
Sbjct: 270 MAIIEGA 276
Score = 50.0 bits (120), Expect = 3e-06
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 12/65 (18%)
Query: 514 TGMELEFKKLSN----------IRAEPSRF--ISASLPCNKHKNRLVHILPVESSRVCLT 561
T +E EF++L IR E + A P N+++NR + P + SRV L
Sbjct: 3 TTIEREFEELDTQRRWQPLYLEIRNESHDYPHRVAKFPENRNRNRYRDVSPYDHSRVKLQ 62
Query: 562 PVRGD 566
D
Sbjct: 63 NAEND 67
Score = 41.1 bits (97), Expect = 0.002
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 561 TPVRGDGFIDFIGQVHKTKEQFGQDGPITVHCS 593
P F++F+ +V ++ GP +HCS
Sbjct: 185 VPESPASFLNFLFKVRESGSLNPDHGPAVIHCS 217
>2p6x_A Tyrosine-protein phosphatase non-receptor type 22; tyrosine
phosphatase, lymphoid phosphatase, PEP, LYP, struct
genomics; 1.90A {Homo sapiens} PDB: 3h2x_A 3brh_A
2qct_A* 2qcj_A* 3olr_A* 3omh_A*
Length = 309
Score = 458 bits (1180), Expect = e-148
Identities = 95/315 (30%), Positives = 145/315 (46%), Gaps = 26/315 (8%)
Query: 200 ISRLAQHIENLKANDNLKFSQEYESI-------EPGQQFTWDHSSMEMNKAKNRYANVIA 252
+ + ++ K +F+ E+ + + + + + N KNRY +++
Sbjct: 7 LQKFLDEAQSKKITKE-EFANEFLKLKRQSTKYKADKTYPTTVAEKPKNIKKNRYKDILP 65
Query: 253 YDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTI 312
YD+SRV LS + S YINAN+ G AY+ATQGPL TL DFWRM+WE + I
Sbjct: 66 YDYSRVELSLITSDEDSSYINANFIKGVYGPKAYIATQGPLSTTLLDFWRMIWEYSVLII 125
Query: 313 VMMTKLEERTRIKCDQYWPSRG--TETYGHITVTLQDVQELASYCIRTFMINKGADSERR 370
VM E + KC++YW G +G +V+ + + + Y IRT + SE R
Sbjct: 126 VMACMEYEMGKKKCERYWAEPGEMQLEFGPFSVSCEAEKRKSDYIIRTLKVKFN--SETR 183
Query: 371 EIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVG 430
I Q + WPDH VP P L + VR + P+ +HCSAG G
Sbjct: 184 TIYQFHYKNWPDHDVPSSIDPILELIWDVRCYQEDDS-----------VPICIHCSAGCG 232
Query: 431 RTGCFIVIDAMIERIKH---DKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLEAVLC 487
RTG ID +K + ++ + +R QR +VQT++QY +++A+LE
Sbjct: 233 RTGVICAIDYTWMLLKDGIIPENFSVFSLIREMRTQRPSLVQTQEQYELVYNAVLELFKR 292
Query: 488 GNTEIPARSLHVHIQ 502
I + H
Sbjct: 293 QMDVIRDKHSAHHHH 307
Score = 443 bits (1141), Expect = e-143
Identities = 92/283 (32%), Positives = 134/283 (47%), Gaps = 18/283 (6%)
Query: 732 QTESIEPGQQFTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGY 791
Q+ + + + + N KNRY +++ YD+SRV LS + S YINAN+ G
Sbjct: 34 QSTKYKADKTYPTTVAEKPKNIKKNRYKDILPYDYSRVELSLITSDEDSSYINANFIKGV 93
Query: 792 RKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG--TETY 849
AY+ATQGPL TL DFWRM+WE + IVM E + KC++YW G +
Sbjct: 94 YGPKAYIATQGPLSTTLLDFWRMIWEYSVLIIVMACMEYEMGKKKCERYWAEPGEMQLEF 153
Query: 850 GHITVTLQDVQELASYCIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRR 909
G +V+ + + + Y IRT + SE R I Q + WPDH VP P L +
Sbjct: 154 GPFSVSCEAEKRKSDYIIRTLKVKFN--SETRTIYQFHYKNWPDHDVPSSIDPILELIWD 211
Query: 910 VRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKH---DKTVDIYG 966
VR + P+ +HCSAG GRTG ID +K + ++
Sbjct: 212 VRCYQEDDS-----------VPICIHCSAGCGRTGVICAIDYTWMLLKDGIIPENFSVFS 260
Query: 967 HVTCLRAQRNYMVQTEDQYMFIHDALLEAVLCGNTEIPASSQM 1009
+ +R QR +VQT++QY +++A+LE I
Sbjct: 261 LIREMRTQRPSLVQTQEQYELVYNAVLELFKRQMDVIRDKHSA 303
Score = 220 bits (562), Expect = 4e-64
Identities = 72/206 (34%), Positives = 97/206 (47%), Gaps = 41/206 (19%)
Query: 1298 EFKKLSN----IRAEPSR-FISASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYIN 1352
EF KL +A+ + A P N KNR ILP + SRV L+ + E S YIN
Sbjct: 27 EFLKLKRQSTKYKADKTYPTTVAEKPKNIKKNRYKDILPYDYSRVELSLITSDEDSSYIN 86
Query: 1353 ASFIDGYRLRSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR---------- 1402
A+FI G AYIATQGPL+ T DFWRM+WE++ I+VM EMG+
Sbjct: 87 ANFIKGVYGPKAYIATQGPLSTTLLDFWRMIWEYSVLIIVMACMEYEMGKKKCERYWAEP 146
Query: 1403 ----------------------YVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDG 1440
Y++R KV ++ +RT+ QF +WP+ VP S D
Sbjct: 147 GEMQLEFGPFSVSCEAEKRKSDYIIRTLKVK--FNSETRTIYQFHYKNWPDHDVPSSIDP 204
Query: 1441 FIDFIGQVHKTKEQFGQDGPITVHCS 1466
++ I V +E PI +HCS
Sbjct: 205 ILELIWDVRCYQED--DSVPICIHCS 228
Score = 179 bits (457), Expect = 4e-50
Identities = 48/145 (33%), Positives = 74/145 (51%), Gaps = 9/145 (6%)
Query: 1503 QEKCHQYWPS--ERSIRYEWFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQLIDW 1560
++KC +YW E + + F V AE Y++R KV ++ +RT+ QF +W
Sbjct: 136 KKKCERYWAEPGEMQLEFGPFSVSCEAEKRKSDYIIRTLKVK--FNSETRTIYQFHYKNW 193
Query: 1561 PEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQ--- 1617
P+ VP S D ++ I V +E PI +HCSAG GRTGV + ++
Sbjct: 194 PDHDVPSSIDPILELIWDVRCYQED--DSVPICIHCSAGCGRTGVICAIDYTWMLLKDGI 251
Query: 1618 YEGVIDLFQTVRILRTQRPAMVQTE 1642
+F +R +RTQRP++VQT+
Sbjct: 252 IPENFSVFSLIREMRTQRPSLVQTQ 276
Score = 108 bits (271), Expect = 2e-25
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 657 GIPGR-DGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQ---YEG 712
+P D ++ I V +E PI +HCSAG GRTGV + ++
Sbjct: 197 DVPSSIDPILELIWDVRCYQED--DSVPICIHCSAGCGRTGVICAIDYTWMLLKDGIIPE 254
Query: 713 VIDLFQTVRILRTQRPAMVQTES 735
+F +R +RTQRP++VQT+
Sbjct: 255 NFSVFSLIREMRTQRPSLVQTQE 277
Score = 83.9 bits (208), Expect = 3e-17
Identities = 15/76 (19%), Positives = 31/76 (40%), Gaps = 8/76 (10%)
Query: 594 RLAQHIENLKANDNLKFSQEYESI-------EPGQQFTWDHSSMEMNKAKNRYANVIAYD 646
+ ++ K +F+ E+ + + + + + N KNRY +++ YD
Sbjct: 9 KFLDEAQSKKITKE-EFANEFLKLKRQSTKYKADKTYPTTVAEKPKNIKKNRYKDILPYD 67
Query: 647 HSRVILSTVDGIPGRD 662
+SRV LS +
Sbjct: 68 YSRVELSLITSDEDSS 83
Score = 71.6 bits (176), Expect = 3e-13
Identities = 19/70 (27%), Positives = 24/70 (34%), Gaps = 33/70 (47%)
Query: 1729 GPLIVHCSAGVGRTGCFIVIDA---------------------------------KEQYQ 1755
P+ +HCSAG GRTG ID +EQY+
Sbjct: 221 VPICIHCSAGCGRTGVICAIDYTWMLLKDGIIPENFSVFSLIREMRTQRPSLVQTQEQYE 280
Query: 1756 FCYHAALEYL 1765
Y+A LE
Sbjct: 281 LVYNAVLELF 290
Score = 53.8 bits (130), Expect = 2e-07
Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 7/80 (8%)
Query: 500 HIQKLMSMEVG--DTSTGMELEFKKLSN----IRAEPSR-FISASLPCNKHKNRLVHILP 552
+QK + T EF KL +A+ + A P N KNR ILP
Sbjct: 6 ILQKFLDEAQSKKITKEEFANEFLKLKRQSTKYKADKTYPTTVAEKPKNIKKNRYKDILP 65
Query: 553 VESSRVCLTPVRGDGFIDFI 572
+ SRV L+ + D +I
Sbjct: 66 YDYSRVELSLITSDEDSSYI 85
Score = 36.9 bits (86), Expect = 0.054
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 561 TPVRGDGFIDFIGQVHKTKEQFGQDGPITVHCS 593
P D ++ I V +E PI +HCS
Sbjct: 198 VPSSIDPILELIWDVRCYQED--DSVPICIHCS 228
>2b49_A Protein tyrosine phosphatase, non-receptor type 3; human, STRU
genomics, structural genomics consortium, SGC,
hydrolase; 1.54A {Homo sapiens}
Length = 287
Score = 453 bits (1167), Expect = e-147
Identities = 94/304 (30%), Positives = 144/304 (47%), Gaps = 24/304 (7%)
Query: 200 ISRLAQHIENLKAN-DNLKFSQEYESI-EPGQQFTWDHSSMEMNKAKNRYANVIAYDHSR 257
+ L + LK ++ ++E + + + N KNRY +V+ YD +R
Sbjct: 1 MDTLEGSMAQLKKGLESGTVLIQFEQLYRKKPGLAITFAKLPQNLDKNRYKDVLPYDTTR 60
Query: 258 VILSTVDGIPGSDYINANYCD----GYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIV 313
V+L DYINA+Y + N Y+ATQGPL T FW++VW+ + IV
Sbjct: 61 VLLQ-----GNEDYINASYVNMEIPAANLVNKYIATQGPLPHTCAQFWQVVWDQKLSLIV 115
Query: 314 MMTKLEERTRIKCDQYWPSRG-TETYGHITVTLQDVQELASYCIRTFMINKGADSERREI 372
M+T L ER R KC QYWP +G + Q +Y R ++ E +
Sbjct: 116 MLTTLTERGRTKCHQYWPDPPDVMNHGGFHIQCQSEDCTIAYVSREMLVTNTQTGEEHTV 175
Query: 373 KQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRT 432
LQ+ AWPDHGVP+ + FL F+ VR++ + P++VHCSAG+GRT
Sbjct: 176 THLQYVAWPDHGVPDDSSDFLEFVNYVRSLRVDS------------EPVLVHCSAGIGRT 223
Query: 433 GCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLEAVLCGNTEI 492
G + ++ + + + + V +R QR MVQT QY F+ +A+L G ++
Sbjct: 224 GVLVTMETAMCLTERNLPIYPLDIVRKMRDQRAMMVQTSSQYKFVCEAILRVYEEGLVQM 283
Query: 493 PARS 496
S
Sbjct: 284 LDPS 287
Score = 432 bits (1112), Expect = e-139
Identities = 90/274 (32%), Positives = 133/274 (48%), Gaps = 22/274 (8%)
Query: 739 GQQFTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCD----GYRKH 794
+ + N KNRY +V+ YD +RV+L DYINA+Y +
Sbjct: 31 KPGLAITFAKLPQNLDKNRYKDVLPYDTTRVLLQ-----GNEDYINASYVNMEIPAANLV 85
Query: 795 NAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG-TETYGHIT 853
N Y+ATQGPL T FW++VW+ + IVM+T L ER R KC QYWP +G
Sbjct: 86 NKYIATQGPLPHTCAQFWQVVWDQKLSLIVMLTTLTERGRTKCHQYWPDPPDVMNHGGFH 145
Query: 854 VTLQDVQELASYCIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAM 913
+ Q +Y R ++ E + LQ+ AWPDHGVP+ + FL F+ VR++
Sbjct: 146 IQCQSEDCTIAYVSREMLVTNTQTGEEHTVTHLQYVAWPDHGVPDDSSDFLEFVNYVRSL 205
Query: 914 NPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRA 973
+ P++VHCSAG+GRTG + ++ + + + + V +R
Sbjct: 206 RVDS------------EPVLVHCSAGIGRTGVLVTMETAMCLTERNLPIYPLDIVRKMRD 253
Query: 974 QRNYMVQTEDQYMFIHDALLEAVLCGNTEIPASS 1007
QR MVQT QY F+ +A+L G ++ S
Sbjct: 254 QRAMMVQTSSQYKFVCEAILRVYEEGLVQMLDPS 287
Score = 214 bits (548), Expect = 1e-62
Identities = 62/204 (30%), Positives = 92/204 (45%), Gaps = 44/204 (21%)
Query: 1298 EFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFID 1357
+F++L + + A LP N KNR +LP +++RV L DYINAS+++
Sbjct: 23 QFEQLYRKKPGLA-ITFAKLPQNLDKNRYKDVLPYDTTRVLLQG-----NEDYINASYVN 76
Query: 1358 ----GYRLRSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR----------- 1402
L + YIATQGPL T FW+++W+ +++VMLT L E GR
Sbjct: 77 MEIPAANLVNKYIATQGPLPHTCAQFWQVVWDQKLSLIVMLTTLTERGRTKCHQYWPDPP 136
Query: 1403 --------------------YVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFI 1442
YV RE VT+ + T+ Q + WP+ GVP F+
Sbjct: 137 DVMNHGGFHIQCQSEDCTIAYVSREMLVTNTQTGEEHTVTHLQYVAWPDHGVPDDSSDFL 196
Query: 1443 DFIGQVHKTKEQFGQDGPITVHCS 1466
+F+ V + P+ VHCS
Sbjct: 197 EFVNYVRSLR---VDSEPVLVHCS 217
Score = 190 bits (486), Expect = 3e-54
Identities = 48/141 (34%), Positives = 70/141 (49%), Gaps = 4/141 (2%)
Query: 1503 QEKCHQYWPSER-SIRYEWFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQLIDWP 1561
+ KCHQYWP + + F ++ +E YV RE VT+ + T+ Q + WP
Sbjct: 125 RTKCHQYWPDPPDVMNHGGFHIQCQSEDCTIAYVSREMLVTNTQTGEEHTVTHLQYVAWP 184
Query: 1562 EQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGV 1621
+ GVP F++F+ V + P+ VHCSAG+GRTGV +T+ + +
Sbjct: 185 DHGVPDDSSDFLEFVNYVRSLR---VDSEPVLVHCSAGIGRTGVLVTMETAMCLTERNLP 241
Query: 1622 IDLFQTVRILRTQRPAMVQTE 1642
I VR +R QR MVQT
Sbjct: 242 IYPLDIVRKMRDQRAMMVQTS 262
Score = 113 bits (284), Expect = 2e-27
Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 657 GIPGR-DGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVID 715
G+P F++F+ V + P+ VHCSAG+GRTGV +T+ + + I
Sbjct: 187 GVPDDSSDFLEFVNYVRSLR---VDSEPVLVHCSAGIGRTGVLVTMETAMCLTERNLPIY 243
Query: 716 LFQTVRILRTQRPAMVQTES 735
VR +R QR MVQT S
Sbjct: 244 PLDIVRKMRDQRAMMVQTSS 263
Score = 78.8 bits (195), Expect = 9e-16
Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 11/92 (11%)
Query: 593 SRLAQHIENLKAN-DNLKFSQEYESI-EPGQQFTWDHSSMEMNKAKNRYANVIAYDHSRV 650
L + LK ++ ++E + + + N KNRY +V+ YD +RV
Sbjct: 2 DTLEGSMAQLKKGLESGTVLIQFEQLYRKKPGLAITFAKLPQNLDKNRYKDVLPYDTTRV 61
Query: 651 ILSTVDGIPGRD----GFIDFIGQVHKTKEQF 678
+L D +++ ++
Sbjct: 62 LLQ-----GNEDYINASYVNMEIPAANLVNKY 88
Score = 71.1 bits (175), Expect = 4e-13
Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 30/67 (44%)
Query: 1729 GPLIVHCSAGVGRTGCFIVIDA------------------------------KEQYQFCY 1758
P++VHCSAG+GRTG + ++ QY+F
Sbjct: 210 EPVLVHCSAGIGRTGVLVTMETAMCLTERNLPIYPLDIVRKMRDQRAMMVQTSSQYKFVC 269
Query: 1759 HAALEYL 1765
A L
Sbjct: 270 EAILRVY 276
Score = 53.0 bits (128), Expect = 3e-07
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 496 SLHVHIQKLMSMEVGDTSTGMELEFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVES 555
+L + + ++ G S + ++F++L + + A LP N KNR +LP ++
Sbjct: 3 TLEGSMAQ---LKKGLESGTVLIQFEQLYRKKPGLA-ITFAKLPQNLDKNRYKDVLPYDT 58
Query: 556 SRVCLTP 562
+RV L
Sbjct: 59 TRVLLQG 65
Score = 36.1 bits (84), Expect = 0.075
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
Query: 561 TPVRGDGFIDFIGQVHKTKEQFGQDGPITVHCS 593
P F++F+ V + P+ VHCS
Sbjct: 188 VPDDSSDFLEFVNYVRSLR---VDSEPVLVHCS 217
>1zc0_A Tyrosine-protein phosphatase, non-receptor type 7; heptp, human
tyrosine phosphatase catalytic domain, LC-PTP,
hydrolase; 1.85A {Homo sapiens} PDB: 2gp0_A 2qdc_A
2hvl_A 2qdp_A 2qdm_A 3o4s_A 3o4t_A* 3o4u_A* 3d44_A*
3d42_A* 2a3k_A
Length = 309
Score = 452 bits (1164), Expect = e-146
Identities = 107/310 (34%), Positives = 151/310 (48%), Gaps = 17/310 (5%)
Query: 177 SDPVEMRRLNFQTPGMVSHPPIPIS--RLAQHIENLKANDNLKFSQEYESIEPGQQFTWD 234
SD + + TP V+ + + L + + + +E+ I P + +
Sbjct: 3 SDKIHHHHHHMNTPREVTLHFLRTAGHPLTRWALQRQPPSPKQLEEEFLKI-PSNFVSPE 61
Query: 235 HSSMEMNKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYR-KHNAYVATQGPL 293
+ + +K+RY ++ SRV L DYINANY GY K Y+ATQGP+
Sbjct: 62 DLDIPGHASKDRYKTILPNPQSRVCLGRAQSQEDGDYINANYIRGYDGKEKVYIATQGPM 121
Query: 294 QETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDVQELAS 353
T+ DFW MVW+ IVM+T+L E + KC YWP+ ETYG + +QD++E
Sbjct: 122 PNTVSDFWEMVWQEEVSLIVMLTQLREG-KEKCVHYWPTE-EETYGPFQIRIQDMKECPE 179
Query: 354 YCIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSG 413
Y +R I ERR +K + F+AWPDH PE P L + V
Sbjct: 180 YTVRQLTIQYQ--EERRSVKHILFSAWPDHQTPESAGPLLRLVAEVEESPETAAH----- 232
Query: 414 VNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQ 473
GP++VHCSAG+GRTGCFI +++K VDI G V LR R M+QT +Q
Sbjct: 233 ----PGPIVVHCSAGIGRTGCFIATRIGCQQLKARGEVDILGIVCQLRLDRGGMIQTAEQ 288
Query: 474 YMFIHDALLE 483
Y F+H L
Sbjct: 289 YQFLHHTLAL 298
Score = 410 bits (1055), Expect = e-131
Identities = 99/258 (38%), Positives = 133/258 (51%), Gaps = 14/258 (5%)
Query: 738 PGQQFTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYR-KHNA 796
P + + + + +K+RY ++ SRV L DYINANY GY K
Sbjct: 54 PSNFVSPEDLDIPGHASKDRYKTILPNPQSRVCLGRAQSQEDGDYINANYIRGYDGKEKV 113
Query: 797 YVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGHITVTL 856
Y+ATQGP+ T+ DFW MVW+ IVM+T+L E + KC YWP+ ETYG + +
Sbjct: 114 YIATQGPMPNTVSDFWEMVWQEEVSLIVMLTQLREG-KEKCVHYWPTE-EETYGPFQIRI 171
Query: 857 QDVQELASYCIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPG 916
QD++E Y +R I ERR +K + F+AWPDH PE P L + V
Sbjct: 172 QDMKECPEYTVRQLTIQYQ--EERRSVKHILFSAWPDHQTPESAGPLLRLVAEVEESPET 229
Query: 917 TNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRN 976
GP++VHCSAG+GRTGCFI +++K VDI G V LR R
Sbjct: 230 AAH---------PGPIVVHCSAGIGRTGCFIATRIGCQQLKARGEVDILGIVCQLRLDRG 280
Query: 977 YMVQTEDQYMFIHDALLE 994
M+QT +QY F+H L
Sbjct: 281 GMIQTAEQYQFLHHTLAL 298
Score = 212 bits (542), Expect = 1e-61
Identities = 60/199 (30%), Positives = 92/199 (46%), Gaps = 36/199 (18%)
Query: 1298 EFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFID 1357
EF K+ + P +P + K+R ILP SRVCL + E DYINA++I
Sbjct: 49 EFLKIPSNFVSPE---DLDIPGHASKDRYKTILPNPQSRVCLGRAQSQEDGDYINANYIR 105
Query: 1358 GYRLRS-AYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR-------------- 1402
GY + YIATQGP+ +T DFW M+W+ +++VMLT+L+E G+
Sbjct: 106 GYDGKEKVYIATQGPMPNTVSDFWEMVWQEEVSLIVMLTQLRE-GKEKCVHYWPTEEETY 164
Query: 1403 ---------------YVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQ 1447
Y +R+ + R+++ WP+ P+S + + +
Sbjct: 165 GPFQIRIQDMKECPEYTVRQLTIQ--YQEERRSVKHILFSAWPDHQTPESAGPLLRLVAE 222
Query: 1448 VHKTKEQFGQDGPITVHCS 1466
V ++ E GPI VHCS
Sbjct: 223 VEESPETAAHPGPIVVHCS 241
Score = 188 bits (479), Expect = 4e-53
Identities = 44/139 (31%), Positives = 68/139 (48%), Gaps = 3/139 (2%)
Query: 1504 EKCHQYWPSERSIRYEWFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQLIDWPEQ 1563
EKC YWP+E Y F + P+Y +R+ + R+++ WP+
Sbjct: 151 EKCVHYWPTE-EETYGPFQIRIQDMKECPEYTVRQLTIQ--YQEERRSVKHILFSAWPDH 207
Query: 1564 GVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVID 1623
P+S + + +V ++ E GPI VHCSAG+GRTG FI I ++++ G +D
Sbjct: 208 QTPESAGPLLRLVAEVEESPETAAHPGPIVVHCSAGIGRTGCFIATRIGCQQLKARGEVD 267
Query: 1624 LFQTVRILRTQRPAMVQTE 1642
+ V LR R M+QT
Sbjct: 268 ILGIVCQLRLDRGGMIQTA 286
Score = 117 bits (296), Expect = 7e-29
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 657 GIPGR-DGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVID 715
P + + +V ++ E GPI VHCSAG+GRTG FI I ++++ G +D
Sbjct: 208 QTPESAGPLLRLVAEVEESPETAAHPGPIVVHCSAGIGRTGCFIATRIGCQQLKARGEVD 267
Query: 716 LFQTVRILRTQRPAMVQTE 734
+ V LR R M+QT
Sbjct: 268 ILGIVCQLRLDRGGMIQTA 286
Score = 90.5 bits (225), Expect = 1e-19
Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 6/93 (6%)
Query: 575 VHKTKEQFGQDGPITVHCSR-----LAQHIENLKANDNLKFSQEYESIEPGQQFTWDHSS 629
+H +T+H R L + + + +E+ I P + +
Sbjct: 6 IHHHHHHMNTPREVTLHFLRTAGHPLTRWALQRQPPSPKQLEEEFLKI-PSNFVSPEDLD 64
Query: 630 MEMNKAKNRYANVIAYDHSRVILSTVDGIPGRD 662
+ + +K+RY ++ SRV L D
Sbjct: 65 IPGHASKDRYKTILPNPQSRVCLGRAQSQEDGD 97
Score = 78.9 bits (195), Expect = 1e-15
Identities = 23/74 (31%), Positives = 27/74 (36%), Gaps = 30/74 (40%)
Query: 1729 GPLIVHCSAGVGRTGCFIVIDA------------------------------KEQYQFCY 1758
GP++VHCSAG+GRTGCFI EQYQF +
Sbjct: 234 GPIVVHCSAGIGRTGCFIATRIGCQQLKARGEVDILGIVCQLRLDRGGMIQTAEQYQFLH 293
Query: 1759 HAALEYLGSFDHYT 1772
H Y G
Sbjct: 294 HTLALYAGQLPEEP 307
Score = 58.1 bits (141), Expect = 9e-09
Identities = 23/100 (23%), Positives = 35/100 (35%), Gaps = 8/100 (8%)
Query: 476 FIHDALLEAVLCGNTEIPARSLHVHIQKLMSMEV---GDTSTGMELEFKKLSNIRAEPSR 532
IH + E+ L L + + +E EF K+ + P
Sbjct: 5 KIHHHHHH--MNTPREVTLHFLRTAGHPLTRWALQRQPPSPKQLEEEFLKIPSNFVSPE- 61
Query: 533 FISASLPCNKHKNRLVHILPVESSRVCLTPVRGDGFIDFI 572
+P + K+R ILP SRVCL + D+I
Sbjct: 62 --DLDIPGHASKDRYKTILPNPQSRVCLGRAQSQEDGDYI 99
Score = 42.7 bits (101), Expect = 8e-04
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 561 TPVRGDGFIDFIGQVHKTKEQFGQDGPITVHCS 593
TP + + +V ++ E GPI VHCS
Sbjct: 209 TPESAGPLLRLVAEVEESPETAAHPGPIVVHCS 241
>2cm2_A Tyrosine-protein phosphatase non-receptor type 1; polymorphism,
phosphorylation, endoplasmic reticulum, oxidation,
hydrolase, acetylation; 1.5A {Homo sapiens} SCOP:
c.45.1.2 PDB: 2cm3_A 2cmb_A* 2cmc_A* 2cne_A* 3a5j_A
2cma_A 3a5k_A 3eu0_A 3sme_A 2azr_A* 2b07_A* 2h4g_A*
2h4k_A* 2hb1_A* 2qbp_A* 2qbq_A* 2qbr_A* 2qbs_A* 2zmm_A*
2zn7_A* ...
Length = 304
Score = 446 bits (1149), Expect = e-144
Identities = 95/311 (30%), Positives = 153/311 (49%), Gaps = 25/311 (8%)
Query: 200 ISRLAQHIENLKANDNLKFSQEYESI-EPGQQFTWDHSSMEMNKAKNRYANVIAYDHSRV 258
+ + E + + ++ Y+ I F + + NK +NRY +V +DHSR+
Sbjct: 6 HHEMEKEFEQIDKSG--SWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRI 63
Query: 259 ILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKL 318
L +DYINA+ +Y+ TQGPL T G FW MVWE +S +VM+ ++
Sbjct: 64 KLHQ----EDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRV 119
Query: 319 EERTRIKCDQYWPSRGTET----YGHITVTLQDVQELASYCIRTFMINKGADSERREIKQ 374
E+ +KC QYWP + + ++ +TL + Y +R + E REI
Sbjct: 120 MEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQLELENLTTQETREILH 179
Query: 375 LQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGC 434
+T WPD GVPE PA FL FL +VR + GP++VHCSAG+GR+G
Sbjct: 180 FHYTTWPDFGVPESPASFLNFLFKVRESGSLSPE---------HGPVVVHCSAGIGRSGT 230
Query: 435 FIVIDA---MIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLEAV--LCGN 489
F + D ++++ K +VDI + +R R ++QT DQ F + A++E + G+
Sbjct: 231 FCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAKFIMGD 290
Query: 490 TEIPARSLHVH 500
+ + + +
Sbjct: 291 SSVQDQWKELS 301
Score = 433 bits (1116), Expect = e-139
Identities = 93/287 (32%), Positives = 146/287 (50%), Gaps = 22/287 (7%)
Query: 737 EPGQQFTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNA 796
F + + NK +NRY +V +DHSR+ L +DYINA+ +
Sbjct: 31 HEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ----EDNDYINASLIKMEEAQRS 86
Query: 797 YVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTET----YGHI 852
Y+ TQGPL T G FW MVWE +S +VM+ ++ E+ +KC QYWP + + ++
Sbjct: 87 YILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNL 146
Query: 853 TVTLQDVQELASYCIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRA 912
+TL + Y +R + E REI +T WPD GVPE PA FL FL +VR
Sbjct: 147 KLTLISEDIKSYYTVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRE 206
Query: 913 MNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDA---MIERIKHDKTVDIYGHVT 969
+ GP++VHCSAG+GR+G F + D ++++ K +VDI +
Sbjct: 207 SGSLSPE---------HGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLL 257
Query: 970 CLRAQRNYMVQTEDQYMFIHDALLEAV--LCGNTEIPASSQMITRKD 1014
+R R ++QT DQ F + A++E + G++ + + ++ +D
Sbjct: 258 EMRKFRMGLIQTADQLRFSYLAVIEGAKFIMGDSSVQDQWKELSHED 304
Score = 224 bits (573), Expect = 1e-65
Identities = 59/203 (29%), Positives = 92/203 (45%), Gaps = 39/203 (19%)
Query: 1298 EFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFID 1357
++ + + A A LP NK++NR + P + SR+ L E +DYINAS I
Sbjct: 25 IYQDIRH-EASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ----EDNDYINASLIK 79
Query: 1358 GYRLRSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR--------------- 1402
+ +YI TQGPL +T FW M+WE S VVML ++ E G
Sbjct: 80 MEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEM 139
Query: 1403 -------------------YVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFID 1443
Y +R+ ++ + +R + F WP+ GVP+S F++
Sbjct: 140 IFEDTNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLN 199
Query: 1444 FIGQVHKTKEQFGQDGPITVHCS 1466
F+ +V ++ + GP+ VHCS
Sbjct: 200 FLFKVRESGSLSPEHGPVVVHCS 222
Score = 187 bits (478), Expect = 5e-53
Identities = 38/147 (25%), Positives = 71/147 (48%), Gaps = 7/147 (4%)
Query: 1503 QEKCHQYWPSERS----IRYEWFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQLI 1558
KC QYWP + + I+E Y +R+ ++ + +R + F
Sbjct: 124 SLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHYT 183
Query: 1559 DWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIV---LER 1615
WP+ GVP+S F++F+ +V ++ + GP+ VHCSAG+GR+G F +++
Sbjct: 184 TWPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDK 243
Query: 1616 MQYEGVIDLFQTVRILRTQRPAMVQTE 1642
+ +D+ + + +R R ++QT
Sbjct: 244 RKDPSSVDIKKVLLEMRKFRMGLIQTA 270
Score = 112 bits (283), Expect = 5e-27
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 662 DGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIV---LERMQYEGVIDLFQ 718
F++F+ +V ++ + GP+ VHCSAG+GR+G F +++ + +D+ +
Sbjct: 195 ASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKK 254
Query: 719 TVRILRTQRPAMVQTES 735
+ +R R ++QT
Sbjct: 255 VLLEMRKFRMGLIQTAD 271
Score = 81.5 bits (202), Expect = 2e-16
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 591 HCSRLAQHIENLKANDNLKFSQEYESI-EPGQQFTWDHSSMEMNKAKNRYANVIAYDHSR 649
H + + E + + ++ Y+ I F + + NK +NRY +V +DHSR
Sbjct: 5 HHHEMEKEFEQIDKSG--SWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSR 62
Query: 650 VILSTVDG 657
+ L D
Sbjct: 63 IKLHQEDN 70
Score = 69.2 bits (170), Expect = 2e-12
Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 33/70 (47%)
Query: 1729 GPLIVHCSAGVGRTGCFIVIDA---------------------------------KEQYQ 1755
GP++VHCSAG+GR+G F + D +Q +
Sbjct: 215 GPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTADQLR 274
Query: 1756 FCYHAALEYL 1765
F Y A +E
Sbjct: 275 FSYLAVIEGA 284
Score = 50.0 bits (120), Expect = 4e-06
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 3/72 (4%)
Query: 497 LHVHIQKLMSMEVG--DTSTGMELEFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVE 554
+H H M E D S ++ + + A A LP NK++NR + P +
Sbjct: 1 MHHHHHHEMEKEFEQIDKSGSWAAIYQDIRH-EASDFPCRVAKLPKNKNRNRYRDVSPFD 59
Query: 555 SSRVCLTPVRGD 566
SR+ L D
Sbjct: 60 HSRIKLHQEDND 71
Score = 41.9 bits (99), Expect = 0.001
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 561 TPVRGDGFIDFIGQVHKTKEQFGQDGPITVHCS 593
P F++F+ +V ++ + GP+ VHCS
Sbjct: 190 VPESPASFLNFLFKVRESGSLSPEHGPVVVHCS 222
>2i75_A Tyrosine-protein phosphatase non-receptor type 4; PTPN4, PTP,
tyrosine phosphatase, MEG-1, structural genomics
structural genomics consortium, SGC; 2.45A {Homo
sapiens}
Length = 320
Score = 446 bits (1149), Expect = e-144
Identities = 103/316 (32%), Positives = 150/316 (47%), Gaps = 27/316 (8%)
Query: 196 PPIPISRLAQHIENL-KANDNLKFSQEYESI-EPGQQFTWDHSSMEMNKAKNRYANVIAY 253
L + + L + +++ + T + + N +KNRY ++ Y
Sbjct: 24 VHQDDHSLRESMIQLAEGLITGTVLTQFDQLYRKKPGMTMSCAKLPQNISKNRYRDISPY 83
Query: 254 DHSRVILSTVDGIPGSDYINANYCD----GYRKHNAYVATQGPLQETLGDFWRMVWELRS 309
D +RVIL DYINANY + N Y+A QGPL T DFW+M WE S
Sbjct: 84 DATRVILK-----GNEDYINANYINMEIPSSSIINQYIACQGPLPHTCTDFWQMTWEQGS 138
Query: 310 VTIVMMTKLEERTRIKCDQYWPS-RGTETYGHITVTLQDVQELASYCIRTFMINKGADSE 368
+VM+T ER R+KC QYWP G+ +YG VT + +Y R + +E
Sbjct: 139 SMVVMLTTQVERGRVKCHQYWPEPTGSSSYGCYQVTCHSEEGNTAYIFRKMTLFNQEKNE 198
Query: 369 RREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAG 428
R + Q+Q+ AWPDHGVP+ + FL F+ VR G P++VHCSAG
Sbjct: 199 SRPLTQIQYIAWPDHGVPDDSSDFLDFVCHVRNKRAGKE-----------EPVVVHCSAG 247
Query: 429 VGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLEAVLCG 488
+GRTG I ++ + I+ ++ V V +R QR M+QT QY F+ +A+L+ G
Sbjct: 248 IGRTGVLITMETAMCLIECNQPVYPLDIVRTMRDQRAMMIQTPSQYRFVCEAILKVYEEG 307
Query: 489 NTEIPARSLHVHIQKL 504
+ L KL
Sbjct: 308 FVKP----LTTSTNKL 319
Score = 431 bits (1110), Expect = e-138
Identities = 100/279 (35%), Positives = 142/279 (50%), Gaps = 22/279 (7%)
Query: 739 GQQFTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCD----GYRKH 794
T + + N +KNRY ++ YD +RVIL DYINANY +
Sbjct: 58 KPGMTMSCAKLPQNISKNRYRDISPYDATRVILK-----GNEDYINANYINMEIPSSSII 112
Query: 795 NAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPS-RGTETYGHIT 853
N Y+A QGPL T DFW+M WE S +VM+T ER R+KC QYWP G+ +YG
Sbjct: 113 NQYIACQGPLPHTCTDFWQMTWEQGSSMVVMLTTQVERGRVKCHQYWPEPTGSSSYGCYQ 172
Query: 854 VTLQDVQELASYCIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAM 913
VT + +Y R + +E R + Q+Q+ AWPDHGVP+ + FL F+ VR
Sbjct: 173 VTCHSEEGNTAYIFRKMTLFNQEKNESRPLTQIQYIAWPDHGVPDDSSDFLDFVCHVRNK 232
Query: 914 NPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRA 973
G P++VHCSAG+GRTG I ++ + I+ ++ V V +R
Sbjct: 233 RAGKE-----------EPVVVHCSAGIGRTGVLITMETAMCLIECNQPVYPLDIVRTMRD 281
Query: 974 QRNYMVQTEDQYMFIHDALLEAVLCGNTEI-PASSQMIT 1011
QR M+QT QY F+ +A+L+ G + S+ +T
Sbjct: 282 QRAMMIQTPSQYRFVCEAILKVYEEGFVKPLTTSTNKLT 320
Score = 215 bits (550), Expect = 2e-62
Identities = 67/205 (32%), Positives = 93/205 (45%), Gaps = 43/205 (20%)
Query: 1297 TEFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFI 1356
T+F +L + + A LP N KNR I P +++RV L DYINA++I
Sbjct: 49 TQFDQLYRKKPGMT-MSCAKLPQNISKNRYRDISPYDATRVILKG-----NEDYINANYI 102
Query: 1357 D----GYRLRSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR---------- 1402
+ + + YIA QGPL T DFW+M WE S++VVMLT E GR
Sbjct: 103 NMEIPSSSIINQYIACQGPLPHTCTDFWQMTWEQGSSMVVMLTTQVERGRVKCHQYWPEP 162
Query: 1403 ---------------------YVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGF 1441
Y+ R+ + + SR L Q Q I WP+ GVP F
Sbjct: 163 TGSSSYGCYQVTCHSEEGNTAYIFRKMTLFNQEKNESRPLTQIQYIAWPDHGVPDDSSDF 222
Query: 1442 IDFIGQVHKTKEQFGQDGPITVHCS 1466
+DF+ V + G++ P+ VHCS
Sbjct: 223 LDFVCHVRNK--RAGKEEPVVVHCS 245
Score = 192 bits (491), Expect = 1e-54
Identities = 51/141 (36%), Positives = 73/141 (51%), Gaps = 3/141 (2%)
Query: 1503 QEKCHQYWPSER-SIRYEWFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQLIDWP 1561
+ KCHQYWP S Y + V +E Y+ R+ + + SR L Q Q I WP
Sbjct: 152 RVKCHQYWPEPTGSSSYGCYQVTCHSEEGNTAYIFRKMTLFNQEKNESRPLTQIQYIAWP 211
Query: 1562 EQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGV 1621
+ GVP F+DF+ V + G++ P+ VHCSAG+GRTGV IT+ + ++
Sbjct: 212 DHGVPDDSSDFLDFVCHVRNK--RAGKEEPVVVHCSAGIGRTGVLITMETAMCLIECNQP 269
Query: 1622 IDLFQTVRILRTQRPAMVQTE 1642
+ VR +R QR M+QT
Sbjct: 270 VYPLDIVRTMRDQRAMMIQTP 290
Score = 114 bits (288), Expect = 1e-27
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 662 DGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVIDLFQTVR 721
F+DF+ V + G++ P+ VHCSAG+GRTGV IT+ + ++ + VR
Sbjct: 220 SDFLDFVCHVRNK--RAGKEEPVVVHCSAGIGRTGVLITMETAMCLIECNQPVYPLDIVR 277
Query: 722 ILRTQRPAMVQTES 735
+R QR M+QT S
Sbjct: 278 TMRDQRAMMIQTPS 291
Score = 73.9 bits (182), Expect = 5e-14
Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Query: 587 PITVHCSRLAQHIENL-KANDNLKFSQEYESI-EPGQQFTWDHSSMEMNKAKNRYANVIA 644
+ L + + L + +++ + T + + N +KNRY ++
Sbjct: 23 SVHQDDHSLRESMIQLAEGLITGTVLTQFDQLYRKKPGMTMSCAKLPQNISKNRYRDISP 82
Query: 645 YDHSRVILS 653
YD +RVIL
Sbjct: 83 YDATRVILK 91
Score = 70.8 bits (174), Expect = 7e-13
Identities = 17/67 (25%), Positives = 24/67 (35%), Gaps = 30/67 (44%)
Query: 1729 GPLIVHCSAGVGRTGCFIVIDA------------------------------KEQYQFCY 1758
P++VHCSAG+GRTG I ++ QY+F
Sbjct: 238 EPVVVHCSAGIGRTGVLITMETAMCLIECNQPVYPLDIVRTMRDQRAMMIQTPSQYRFVC 297
Query: 1759 HAALEYL 1765
A L+
Sbjct: 298 EAILKVY 304
Score = 55.8 bits (135), Expect = 5e-08
Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 490 TEIPARSLHVHIQKLMSMEVGDTSTGMELEFKKLSNIRAEPSRFISASLPCNKHKNRLVH 549
+ + H + ++ + G + + +F +L + + A LP N KNR
Sbjct: 21 LDSVHQDDHSLRESMIQLAEGLITGTVLTQFDQLYRKKPGMT-MSCAKLPQNISKNRYRD 79
Query: 550 ILPVESSRVCLTP 562
I P +++RV L
Sbjct: 80 ISPYDATRVILKG 92
Score = 37.7 bits (88), Expect = 0.030
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 561 TPVRGDGFIDFIGQVHKTKEQFGQDGPITVHCS 593
P F+DF+ V + G++ P+ VHCS
Sbjct: 215 VPDDSSDFLDFVCHVRNK--RAGKEEPVVVHCS 245
>1wch_A Protein tyrosine phosphatase, non-receptor type 13; hydrolase,
phosphate ION, colorectal cancer alternative splicing,
coiled coil, cytoskeleton; 1.85A {Homo sapiens} SCOP:
c.45.1.2
Length = 315
Score = 442 bits (1140), Expect = e-143
Identities = 104/302 (34%), Positives = 150/302 (49%), Gaps = 25/302 (8%)
Query: 197 PIPISRLAQHIENLKAN-DNLKFSQEYESI-EPGQQFTWDHSSMEMNKAKNRYANVIAYD 254
+ L I L+ D S+E E++ E + N+ KNRY N++ YD
Sbjct: 29 KYTGANLKSVIRVLRGLLDQGIPSKELENLQELKPLDQCLIGQTKENRRKNRYKNILPYD 88
Query: 255 HSRVILSTVDGIPGSDYINANYCDG--YRKHNAYVATQGPLQETLGDFWRMVWELRSVTI 312
+RV L YINA++ ++ Y+A QGPL T+GDFW+M+WE +S I
Sbjct: 89 ATRVPLG-----DEGGYINASFIKIPVGKEEFVYIACQGPLPTTVGDFWQMIWEQKSTVI 143
Query: 313 VMMTKLEERTRIKCDQYWPS---RGTETYGHITVTLQDVQELASYCIRTFMINKGADSER 369
MMT+ E +IKC +YWP+ + T + + L +Q+L + +R + E
Sbjct: 144 AMMTQEVEGEKIKCQRYWPNILGKTTMVSNRLRLALVRMQQLKGFVVRAMTLEDIQTREV 203
Query: 370 REIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGV 429
R I L FTAWPDH P P L F+ +R ++ GP+I HCSAG+
Sbjct: 204 RHISHLNFTAWPDHDTPSQPDDLLTFISYMRHIHRS-------------GPIITHCSAGI 250
Query: 430 GRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLEAVLCGN 489
GR+G I ID ++ I D DI V C+R QR+ MVQTEDQY+F + +L +
Sbjct: 251 GRSGTLICIDVVLGLISQDLDFDISDLVRCMRLQRHGMVQTEDQYIFCYQVILYVLTRLQ 310
Query: 490 TE 491
E
Sbjct: 311 AE 312
Score = 421 bits (1084), Expect = e-135
Identities = 97/271 (35%), Positives = 138/271 (50%), Gaps = 23/271 (8%)
Query: 737 EPGQQFTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDG--YRKH 794
E + N+ KNRY N++ YD +RV L YINA++ ++
Sbjct: 60 ELKPLDQCLIGQTKENRRKNRYKNILPYDATRVPLG-----DEGGYINASFIKIPVGKEE 114
Query: 795 NAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPS---RGTETYGH 851
Y+A QGPL T+GDFW+M+WE +S I MMT+ E +IKC +YWP+ + T
Sbjct: 115 FVYIACQGPLPTTVGDFWQMIWEQKSTVIAMMTQEVEGEKIKCQRYWPNILGKTTMVSNR 174
Query: 852 ITVTLQDVQELASYCIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVR 911
+ + L +Q+L + +R + E R I L FTAWPDH P P L F+ +R
Sbjct: 175 LRLALVRMQQLKGFVVRAMTLEDIQTREVRHISHLNFTAWPDHDTPSQPDDLLTFISYMR 234
Query: 912 AMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCL 971
++ GP+I HCSAG+GR+G I ID ++ I D DI V C+
Sbjct: 235 HIHRS-------------GPIITHCSAGIGRSGTLICIDVVLGLISQDLDFDISDLVRCM 281
Query: 972 RAQRNYMVQTEDQYMFIHDALLEAVLCGNTE 1002
R QR+ MVQTEDQY+F + +L + E
Sbjct: 282 RLQRHGMVQTEDQYIFCYQVILYVLTRLQAE 312
Score = 213 bits (545), Expect = 9e-62
Identities = 54/204 (26%), Positives = 79/204 (38%), Gaps = 45/204 (22%)
Query: 1298 EFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFID 1357
E + L ++ + N+ KNR +ILP +++RV L YINASFI
Sbjct: 54 ELENLQELKPLDQ-CLIGQTKENRRKNRYKNILPYDATRVPLGD-----EGGYINASFIK 107
Query: 1358 G--YRLRSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------- 1402
+ YIA QGPL T DFW+M+WE ST++ M+T+ E +
Sbjct: 108 IPVGKEEFVYIACQGPLPTTVGDFWQMIWEQKSTVIAMMTQEVEGEKIKCQRYWPNILGK 167
Query: 1403 --------------------YVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFI 1442
+V+R + D + R + WP+ P D +
Sbjct: 168 TTMVSNRLRLALVRMQQLKGFVVRAMTLEDIQTREVRHISHLNFTAWPDHDTPSQPDDLL 227
Query: 1443 DFIGQVHKTKEQFGQDGPITVHCS 1466
FI + GPI HCS
Sbjct: 228 TFISYMRHIHR----SGPIITHCS 247
Score = 190 bits (486), Expect = 7e-54
Identities = 40/143 (27%), Positives = 65/143 (45%), Gaps = 7/143 (4%)
Query: 1503 QEKCHQYWPS---ERSIRYEWFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQLID 1559
+ KC +YWP+ + ++ + + + +V+R + D + R +
Sbjct: 154 KIKCQRYWPNILGKTTMVSNRLRLALVRMQQLKGFVVRAMTLEDIQTREVRHISHLNFTA 213
Query: 1560 WPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYE 1619
WP+ P D + FI + GPI HCSAG+GR+G I + +VL + +
Sbjct: 214 WPDHDTPSQPDDLLTFISYMRHIHR----SGPIITHCSAGIGRSGTLICIDVVLGLISQD 269
Query: 1620 GVIDLFQTVRILRTQRPAMVQTE 1642
D+ VR +R QR MVQTE
Sbjct: 270 LDFDISDLVRCMRLQRHGMVQTE 292
Score = 114 bits (287), Expect = 2e-27
Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 662 DGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVIDLFQTVR 721
D + FI + GPI HCSAG+GR+G I + +VL + + D+ VR
Sbjct: 224 DDLLTFISYMRHIHR----SGPIITHCSAGIGRSGTLICIDVVLGLISQDLDFDISDLVR 279
Query: 722 ILRTQRPAMVQTES 735
+R QR MVQTE
Sbjct: 280 CMRLQRHGMVQTED 293
Score = 76.9 bits (190), Expect = 5e-15
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 593 SRLAQHIENLKAN-DNLKFSQEYESI-EPGQQFTWDHSSMEMNKAKNRYANVIAYDHSRV 650
+ L I L+ D S+E E++ E + N+ KNRY N++ YD +RV
Sbjct: 33 ANLKSVIRVLRGLLDQGIPSKELENLQELKPLDQCLIGQTKENRRKNRYKNILPYDATRV 92
Query: 651 ILS 653
L
Sbjct: 93 PLG 95
Score = 73.5 bits (181), Expect = 9e-14
Identities = 21/71 (29%), Positives = 26/71 (36%), Gaps = 30/71 (42%)
Query: 1729 GPLIVHCSAGVGRTGCFIVIDA------------------------------KEQYQFCY 1758
GP+I HCSAG+GR+G I ID ++QY FCY
Sbjct: 240 GPIITHCSAGIGRSGTLICIDVVLGLISQDLDFDISDLVRCMRLQRHGMVQTEDQYIFCY 299
Query: 1759 HAALEYLGSFD 1769
L L
Sbjct: 300 QVILYVLTRLQ 310
Score = 61.5 bits (150), Expect = 7e-10
Identities = 17/101 (16%), Positives = 37/101 (36%), Gaps = 8/101 (7%)
Query: 462 AQRNYMVQTEDQYMFIHDALLEAVLCGNTEIPARSLHVHIQKLMSMEVGDTSTGMELEFK 521
+ +++ T D+ + + + + +L I+ L E +
Sbjct: 4 SDKDHSFLTNDELAVLPVVKVLP----SGKYTGANLKSVIRVL---RGLLDQGIPSKELE 56
Query: 522 KLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLTP 562
L ++ + N+ KNR +ILP +++RV L
Sbjct: 57 NLQELKPLDQ-CLIGQTKENRRKNRYKNILPYDATRVPLGD 96
Score = 36.9 bits (86), Expect = 0.052
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
Query: 561 TPVRGDGFIDFIGQVHKTKEQFGQDGPITVHCS 593
TP + D + FI + GPI HCS
Sbjct: 219 TPSQPDDLLTFISYMRHIHR----SGPIITHCS 247
>1fpr_A Protein-tyrosine phosphatase 1C; protein tyrosine phosphatase,
substrate specificity, residue shift, signaling protein;
HET: PTR; 2.50A {Homo sapiens} SCOP: c.45.1.2 PDB:
1gwz_A
Length = 284
Score = 435 bits (1121), Expect = e-140
Identities = 112/291 (38%), Positives = 148/291 (50%), Gaps = 23/291 (7%)
Query: 218 FSQEYESI---EPGQQFTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVDG-IPGSDYIN 273
F +E+ES+ E NK KNRY N++ +DHSRVIL D IPGSDYIN
Sbjct: 2 FWEEFESLQKQEVKNLHQRLEGQRPENKGKNRYKNILPFDHSRVILQGRDSNIPGSDYIN 61
Query: 274 ANYCDGY-----RKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQ 328
ANY Y+A+QG L+ T+ DFW+M W+ S IVM T+ E+ R KC
Sbjct: 62 ANYIKNQLLGPDENAKTYIASQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCVP 121
Query: 329 YWPSRG-TETYGHITVTLQDVQELASYCIRTFMI-NKGADSERREIKQLQFTAWPDHGVP 386
YWP G YG +VT + Y +RT + REI Q+ +WPDHGVP
Sbjct: 122 YWPEVGMQRAYGPYSVTNCGEHDTTEYKLRTLQVSPLDNGDLIREIWHYQYLSWPDHGVP 181
Query: 387 EHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIK 446
P L FL ++ GP+IVH SAG+GRTG IVID ++E I
Sbjct: 182 SEPGGVLSFLDQINQRQESLPH---------AGPIIVHSSAGIGRTGTIIVIDMLMENIS 232
Query: 447 H---DKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLEAVLCGNTEIPA 494
D +DI + +RAQR+ MVQTE QY FI+ A+ + + ++
Sbjct: 233 TKGLDCDIDIQKTIQMVRAQRSGMVQTEAQYKFIYVAIAQFIETTKKKLEV 283
Score = 424 bits (1093), Expect = e-137
Identities = 108/282 (38%), Positives = 141/282 (50%), Gaps = 20/282 (7%)
Query: 735 SIEPGQQFTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVDG-IPGSDYINANYCDGY-- 791
E NK KNRY N++ +DHSRVIL D IPGSDYINANY
Sbjct: 11 KQEVKNLHQRLEGQRPENKGKNRYKNILPFDHSRVILQGRDSNIPGSDYINANYIKNQLL 70
Query: 792 ---RKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG-TE 847
Y+A+QG L+ T+ DFW+M W+ S IVM T+ E+ R KC YWP G
Sbjct: 71 GPDENAKTYIASQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCVPYWPEVGMQR 130
Query: 848 TYGHITVTLQDVQELASYCIRTFMI-NKGADSERREIKQLQFTAWPDHGVPEHPAPFLLF 906
YG +VT + Y +RT + REI Q+ +WPDHGVP P L F
Sbjct: 131 AYGPYSVTNCGEHDTTEYKLRTLQVSPLDNGDLIREIWHYQYLSWPDHGVPSEPGGVLSF 190
Query: 907 LRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKH---DKTVD 963
L ++ GP+IVH SAG+GRTG IVID ++E I D +D
Sbjct: 191 LDQINQRQESLPH---------AGPIIVHSSAGIGRTGTIIVIDMLMENISTKGLDCDID 241
Query: 964 IYGHVTCLRAQRNYMVQTEDQYMFIHDALLEAVLCGNTEIPA 1005
I + +RAQR+ MVQTE QY FI+ A+ + + ++
Sbjct: 242 IQKTIQMVRAQRSGMVQTEAQYKFIYVAIAQFIETTKKKLEV 283
Score = 217 bits (554), Expect = 2e-63
Identities = 67/210 (31%), Positives = 93/210 (44%), Gaps = 39/210 (18%)
Query: 1296 KTEFKKLSNIRAEPSR-FISASLPCNKHKNRLVHILPVESSRVCLTPVRG-IEGSDYINA 1353
EF+ L + + P NK KNR +ILP + SRV L I GSDYINA
Sbjct: 3 WEEFESLQKQEVKNLHQRLEGQRPENKGKNRYKNILPFDHSRVILQGRDSNIPGSDYINA 62
Query: 1354 SFIDGYRLRS-----AYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR------ 1402
++I L YIA+QG L T DFW+M W+ NS ++VM T+ E GR
Sbjct: 63 NYIKNQLLGPDENAKTYIASQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCVPY 122
Query: 1403 -------------------------YVLREFKVTDARDA-TSRTLRQFQLIDWPEQGVPK 1436
Y LR +V+ + R + +Q + WP+ GVP
Sbjct: 123 WPEVGMQRAYGPYSVTNCGEHDTTEYKLRTLQVSPLDNGDLIREIWHYQYLSWPDHGVPS 182
Query: 1437 SGDGFIDFIGQVHKTKEQFGQDGPITVHCS 1466
G + F+ Q+++ +E GPI VH S
Sbjct: 183 EPGGVLSFLDQINQRQESLPHAGPIIVHSS 212
Score = 188 bits (480), Expect = 1e-53
Identities = 49/145 (33%), Positives = 81/145 (55%), Gaps = 5/145 (3%)
Query: 1503 QEKCHQYWPSE-RSIRYEWFVVEPIAEYNMPQYVLREFKVTDARDA-TSRTLRQFQLIDW 1560
+ KC YWP Y + V E++ +Y LR +V+ + R + +Q + W
Sbjct: 116 RNKCVPYWPEVGMQRAYGPYSVTNCGEHDTTEYKLRTLQVSPLDNGDLIREIWHYQYLSW 175
Query: 1561 PEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEG 1620
P+ GVP G + F+ Q+++ +E GPI VH SAG+GRTG I + +++E + +G
Sbjct: 176 PDHGVPSEPGGVLSFLDQINQRQESLPHAGPIIVHSSAGIGRTGTIIVIDMLMENISTKG 235
Query: 1621 V---IDLFQTVRILRTQRPAMVQTE 1642
+ ID+ +T++++R QR MVQTE
Sbjct: 236 LDCDIDIQKTIQMVRAQRSGMVQTE 260
Score = 115 bits (289), Expect = 4e-28
Identities = 32/83 (38%), Positives = 54/83 (65%), Gaps = 4/83 (4%)
Query: 657 GIPGR-DGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGV-- 713
G+P G + F+ Q+++ +E GPI VH SAG+GRTG I + +++E + +G+
Sbjct: 179 GVPSEPGGVLSFLDQINQRQESLPHAGPIIVHSSAGIGRTGTIIVIDMLMENISTKGLDC 238
Query: 714 -IDLFQTVRILRTQRPAMVQTES 735
ID+ +T++++R QR MVQTE+
Sbjct: 239 DIDIQKTIQMVRAQRSGMVQTEA 261
Score = 72.3 bits (178), Expect = 1e-13
Identities = 24/57 (42%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 610 FSQEYESI---EPGQQFTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVDG-IPGRD 662
F +E+ES+ E NK KNRY N++ +DHSRVIL D IPG D
Sbjct: 2 FWEEFESLQKQEVKNLHQRLEGQRPENKGKNRYKNILPFDHSRVILQGRDSNIPGSD 58
Score = 71.2 bits (175), Expect = 3e-13
Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 33/74 (44%)
Query: 1729 GPLIVHCSAGVGRTGCFIVIDA---------------------------------KEQYQ 1755
GP+IVH SAG+GRTG IVID + QY+
Sbjct: 205 GPIIVHSSAGIGRTGTIIVIDMLMENISTKGLDCDIDIQKTIQMVRAQRSGMVQTEAQYK 264
Query: 1756 FCYHAALEYLGSFD 1769
F Y A +++ +
Sbjct: 265 FIYVAIAQFIETTK 278
Score = 50.0 bits (120), Expect = 3e-06
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 515 GMELEFKKLSNIRAEPSR-FISASLPCNKHKNRLVHILPVESSRVCLTPVRGDG 567
G EF+ L + + P NK KNR +ILP + SRV L +
Sbjct: 1 GFWEEFESLQKQEVKNLHQRLEGQRPENKGKNRYKNILPFDHSRVILQGRDSNI 54
Score = 41.9 bits (99), Expect = 0.001
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 561 TPVRGDGFIDFIGQVHKTKEQFGQDGPITVHCS 593
P G + F+ Q+++ +E GPI VH S
Sbjct: 180 VPSEPGGVLSFLDQINQRQESLPHAGPIIVHSS 212
>2b3o_A Tyrosine-protein phosphatase, non-receptor type 6; protein tyrosine
phosphatase, SHP-1, signaling, hydrolase; 2.80A {Homo
sapiens} PDB: 1x6c_A 2rmx_A* 2yu7_A*
Length = 532
Score = 445 bits (1146), Expect = e-140
Identities = 121/401 (30%), Positives = 165/401 (41%), Gaps = 60/401 (14%)
Query: 659 PGRDGFIDFIGQVHKTKEQFGQD-----GPITVHCSAGVGRTGVFITLSIVLERMQYEGV 713
DF+ V + + G I V C G G T + + +++
Sbjct: 137 ESLSQPGDFVLSVLSDQPKAGPGSPLRVTHIKVMCEGGRYTVGGLETFDSLTDLVEHFKK 196
Query: 714 IDLFQTVRILRTQRPAMVQT-----------------------------------ESIEP 738
+ + R T + E
Sbjct: 197 TGIEEASGAFVYLRQPYYATRVNAADIENRVLELNKKQESEDTAKAGFWEEFESLQKQEV 256
Query: 739 GQQFTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVDG-IPGSDYINANYCDGY-----R 792
NK KNRY N++ +DHSRVIL D IPGSDYINANY
Sbjct: 257 KNLHQRLEGQRPENKGKNRYKNILPFDHSRVILQGRDSNIPGSDYINANYIKNQLLGPDE 316
Query: 793 KHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG-TETYGH 851
Y+A+QG L+ T+ DFW+M W+ S IVM T+ E+ R KC YWP G YG
Sbjct: 317 NAKTYIASQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCVPYWPEVGMQRAYGP 376
Query: 852 ITVTLQDVQELASYCIRTFMI-NKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRV 910
+VT + Y +RT + REI Q+ +WPDHGVP P L FL ++
Sbjct: 377 YSVTNCGEHDTTEYKLRTLQVSPLDNGDLIREIWHYQYLSWPDHGVPSEPGGVLSFLDQI 436
Query: 911 RAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKH---DKTVDIYGH 967
GP+IVHCSAG+GRTG IVID ++E I D +DI
Sbjct: 437 NQRQESLPH---------AGPIIVHCSAGIGRTGTIIVIDMLMENISTKGLDCDIDIQKT 487
Query: 968 VTCLRAQRNYMVQTEDQYMFIHDALLEAVLCGNTEIPASSQ 1008
+ +RAQR+ MVQTE QY FI+ A+ + + ++
Sbjct: 488 IQMVRAQRSGMVQTEAQYKFIYVAIAQFIETTKKKLEVLQS 528
Score = 413 bits (1063), Expect = e-129
Identities = 118/333 (35%), Positives = 162/333 (48%), Gaps = 24/333 (7%)
Query: 180 VEMRRLNFQTPGMVSHPPIPISRLAQHIENLKANDNLKFSQEYESI---EPGQQFTWDHS 236
V +R+ + T + + L + E+ + F +E+ES+ E
Sbjct: 207 VYLRQPYYATRVNAADIENRVLELNKKQES-EDTAKAGFWEEFESLQKQEVKNLHQRLEG 265
Query: 237 SMEMNKAKNRYANVIAYDHSRVILSTVDG-IPGSDYINANYCDGY-----RKHNAYVATQ 290
NK KNRY N++ +DHSRVIL D IPGSDYINANY Y+A+Q
Sbjct: 266 QRPENKGKNRYKNILPFDHSRVILQGRDSNIPGSDYINANYIKNQLLGPDENAKTYIASQ 325
Query: 291 GPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG-TETYGHITVTLQDVQ 349
G L+ T+ DFW+M W+ S IVM T+ E+ R KC YWP G YG +VT
Sbjct: 326 GCLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCVPYWPEVGMQRAYGPYSVTNCGEH 385
Query: 350 ELASYCIRTFMI-NKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNS 408
+ Y +RT + REI Q+ +WPDHGVP P L FL ++
Sbjct: 386 DTTEYKLRTLQVSPLDNGDLIREIWHYQYLSWPDHGVPSEPGGVLSFLDQINQRQESLPH 445
Query: 409 LESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKH---DKTVDIYGHVTCLRAQRN 465
GP+IVHCSAG+GRTG IVID ++E I D +DI + +RAQR+
Sbjct: 446 ---------AGPIIVHCSAGIGRTGTIIVIDMLMENISTKGLDCDIDIQKTIQMVRAQRS 496
Query: 466 YMVQTEDQYMFIHDALLEAVLCGNTEIPARSLH 498
MVQTE QY FI+ A+ + + ++
Sbjct: 497 GMVQTEAQYKFIYVAIAQFIETTKKKLEVLQSQ 529
Score = 225 bits (574), Expect = 3e-63
Identities = 68/209 (32%), Positives = 95/209 (45%), Gaps = 39/209 (18%)
Query: 1297 TEFKKLSNIRAEP-SRFISASLPCNKHKNRLVHILPVESSRVCLTPVRG-IEGSDYINAS 1354
EF+ L + + + P NK KNR +ILP + SRV L I GSDYINA+
Sbjct: 246 EEFESLQKQEVKNLHQRLEGQRPENKGKNRYKNILPFDHSRVILQGRDSNIPGSDYINAN 305
Query: 1355 FIDGYRLRS-----AYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR------- 1402
+I L YIA+QG L T DFW+M W+ NS ++VM T+ E GR
Sbjct: 306 YIKNQLLGPDENAKTYIASQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCVPYW 365
Query: 1403 ------------------------YVLREFKVTDARDA-TSRTLRQFQLIDWPEQGVPKS 1437
Y LR +V+ + R + +Q + WP+ GVP
Sbjct: 366 PEVGMQRAYGPYSVTNCGEHDTTEYKLRTLQVSPLDNGDLIREIWHYQYLSWPDHGVPSE 425
Query: 1438 GDGFIDFIGQVHKTKEQFGQDGPITVHCS 1466
G + F+ Q+++ +E GPI VHCS
Sbjct: 426 PGGVLSFLDQINQRQESLPHAGPIIVHCS 454
Score = 203 bits (517), Expect = 8e-56
Identities = 50/146 (34%), Positives = 82/146 (56%), Gaps = 5/146 (3%)
Query: 1502 SQEKCHQYWPSE-RSIRYEWFVVEPIAEYNMPQYVLREFKVTDARDA-TSRTLRQFQLID 1559
+ KC YWP Y + V E++ +Y LR +V+ + R + +Q +
Sbjct: 357 GRNKCVPYWPEVGMQRAYGPYSVTNCGEHDTTEYKLRTLQVSPLDNGDLIREIWHYQYLS 416
Query: 1560 WPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYE 1619
WP+ GVP G + F+ Q+++ +E GPI VHCSAG+GRTG I + +++E + +
Sbjct: 417 WPDHGVPSEPGGVLSFLDQINQRQESLPHAGPIIVHCSAGIGRTGTIIVIDMLMENISTK 476
Query: 1620 GV---IDLFQTVRILRTQRPAMVQTE 1642
G+ ID+ +T++++R QR MVQTE
Sbjct: 477 GLDCDIDIQKTIQMVRAQRSGMVQTE 502
Score = 183 bits (465), Expect = 6e-49
Identities = 42/250 (16%), Positives = 71/250 (28%), Gaps = 26/250 (10%)
Query: 326 CDQYWPSRGT-ETYGHITVTLQDVQELASYCIRTFMINKGADSERREIKQLQFTAWPDHG 384
+ Y +G + + L+ + + + + + Q + W
Sbjct: 76 VEYYTQQQGVLQDRDGTIIHLKYPLNCSDPTSERWYHGHMSGGQAETLLQAKGEPW-TFL 134
Query: 385 VPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIER 444
V E + F+ V + P V + V C G G D++ +
Sbjct: 135 VRESLSQPGDFVLSVLSDQPKAGPGSPLRV----THIKVMCEGGRYTVGGLETFDSLTDL 190
Query: 445 IKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLEAVLCGNTEIPARSLHVHIQKL 504
++H K I R T I + V
Sbjct: 191 VEHFKKTGIEEASGAFVYLRQPYYATRVNAADIEN------------------RVLELNK 232
Query: 505 MSMEVGDTSTGMELEFKKLSNIRAEP-SRFISASLPCNKHKNRLVHILPVESSRVCLTPV 563
G EF+ L + + + P NK KNR +ILP + SRV L
Sbjct: 233 KQESEDTAKAGFWEEFESLQKQEVKNLHQRLEGQRPENKGKNRYKNILPFDHSRVILQGR 292
Query: 564 RGDGF-IDFI 572
+ D+I
Sbjct: 293 DSNIPGSDYI 302
Score = 144 bits (364), Expect = 5e-36
Identities = 26/174 (14%), Positives = 50/174 (28%), Gaps = 6/174 (3%)
Query: 837 CDQYWPSRGT-ETYGHITVTLQDVQELASYCIRTFMINKGADSERREIKQLQFTAWPDHG 895
+ Y +G + + L+ + + + + + Q + W
Sbjct: 76 VEYYTQQQGVLQDRDGTIIHLKYPLNCSDPTSERWYHGHMSGGQAETLLQAKGEPW-TFL 134
Query: 896 VPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIER 955
V E + F+ V + P V + V C G G D++ +
Sbjct: 135 VRESLSQPGDFVLSVLSDQPKAGPGSPLRV----THIKVMCEGGRYTVGGLETFDSLTDL 190
Query: 956 IKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLEAVLCGNTEIPASSQM 1009
++H K I R T I + +LE +E A +
Sbjct: 191 VEHFKKTGIEEASGAFVYLRQPYYATRVNAADIENRVLELNKKQESEDTAKAGF 244
Score = 122 bits (307), Expect = 8e-29
Identities = 33/83 (39%), Positives = 55/83 (66%), Gaps = 4/83 (4%)
Query: 657 GIPGR-DGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGV-- 713
G+P G + F+ Q+++ +E GPI VHCSAG+GRTG I + +++E + +G+
Sbjct: 421 GVPSEPGGVLSFLDQINQRQESLPHAGPIIVHCSAGIGRTGTIIVIDMLMENISTKGLDC 480
Query: 714 -IDLFQTVRILRTQRPAMVQTES 735
ID+ +T++++R QR MVQTE+
Sbjct: 481 DIDIQKTIQMVRAQRSGMVQTEA 503
Score = 104 bits (262), Expect = 3e-23
Identities = 21/150 (14%), Positives = 40/150 (26%), Gaps = 7/150 (4%)
Query: 1504 EKCHQYWPSERSIRYEW-FVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQLIDWPE 1562
E Y + ++ ++ N + + TL Q + W
Sbjct: 74 ELVEYYTQQQGVLQDRDGTIIHLKYPLNCSDPTSERWYHGHMSGGQAETLLQAKGEPW-T 132
Query: 1563 QGVPKSGDGFIDFIGQVHKTKEQFGQD-----GPITVHCSAGVGRTGVFITLSIVLERMQ 1617
V +S DF+ V + + G I V C G G T + + ++
Sbjct: 133 FLVRESLSQPGDFVLSVLSDQPKAGPGSPLRVTHIKVMCEGGRYTVGGLETFDSLTDLVE 192
Query: 1618 YEGVIDLFQTVRILRTQRPAMVQTEHLYTS 1647
+ + + R T
Sbjct: 193 HFKKTGIEEASGAFVYLRQPYYATRVNAAD 222
Score = 71.5 bits (175), Expect = 1e-12
Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 33/74 (44%)
Query: 1729 GPLIVHCSAGVGRTGCFIVIDA---------------------------------KEQYQ 1755
GP+IVHCSAG+GRTG IVID + QY+
Sbjct: 447 GPIIVHCSAGIGRTGTIIVIDMLMENISTKGLDCDIDIQKTIQMVRAQRSGMVQTEAQYK 506
Query: 1756 FCYHAALEYLGSFD 1769
F Y A +++ +
Sbjct: 507 FIYVAIAQFIETTK 520
Score = 63.0 bits (153), Expect = 6e-10
Identities = 28/96 (29%), Positives = 38/96 (39%), Gaps = 5/96 (5%)
Query: 571 FIGQVHKTKEQFGQDGPITVHCSRLAQHIENLKANDNLKFSQEYESI---EPGQQFTWDH 627
F+ I L + E+ + F +E+ES+ E
Sbjct: 206 FVYLRQPYYATRVNAADIENRVLELNKKQES-EDTAKAGFWEEFESLQKQEVKNLHQRLE 264
Query: 628 SSMEMNKAKNRYANVIAYDHSRVILSTVDG-IPGRD 662
NK KNRY N++ +DHSRVIL D IPG D
Sbjct: 265 GQRPENKGKNRYKNILPFDHSRVILQGRDSNIPGSD 300
Score = 53.3 bits (128), Expect = 6e-07
Identities = 19/103 (18%), Positives = 34/103 (33%), Gaps = 10/103 (9%)
Query: 1372 LADTTEDFWR---MLWEHNSTIVVMLTKLKEMGRYVLREFKVTDARDATSRTLRQFQLID 1428
L + E + + +L + + TI+ + L + + TL Q +
Sbjct: 72 LTELVEYYTQQQGVLQDRDGTIIHLKYPL-NCSDPTSERWYHGHMSGGQAETLLQAKGEP 130
Query: 1429 WPEQGVPKSGDGFIDFIGQVHKTKEQFGQD-----GPITVHCS 1466
W V +S DF+ V + + G I V C
Sbjct: 131 W-TFLVRESLSQPGDFVLSVLSDQPKAGPGSPLRVTHIKVMCE 172
Score = 52.2 bits (125), Expect = 1e-06
Identities = 10/41 (24%), Positives = 13/41 (31%), Gaps = 3/41 (7%)
Query: 1710 VLLFILKSSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDA 1750
VL K+ S V + V C G G D+
Sbjct: 149 VLSDQPKAGPGSPL---RVTHIKVMCEGGRYTVGGLETFDS 186
Score = 47.2 bits (112), Expect = 4e-05
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 561 TPVRGDGFIDFIGQVHKTKEQFGQDGPITVHCS 593
P G + F+ Q+++ +E GPI VHCS
Sbjct: 422 VPSEPGGVLSFLDQINQRQESLPHAGPIIVHCS 454
>1jln_A STEP-like ptpase, protein tyrosine phosphatase, receptor type, R;
PTP-SL, PTPBR7, ERK2-MAP kinase regulation, hydrolase;
1.81A {Mus musculus} SCOP: c.45.1.2 PDB: 2a8b_A
Length = 297
Score = 435 bits (1122), Expect = e-140
Identities = 105/317 (33%), Positives = 149/317 (47%), Gaps = 26/317 (8%)
Query: 178 DPVEMRRLNFQTPGMVSHPPIPISRLAQHIENLKANDNLKFSQEYESIEPGQQFTWDHSS 237
P E + + + S+L + E+ I P
Sbjct: 2 SPREKVAMEYLQSA---SRVLTRSQLRDV-----VASSHLLQSEFMEI-PMNFVDPKEID 52
Query: 238 MEMNKAKNRYANVIAYDHSRVILSTVDG-IPGSDYINANYCDGYR-KHNAYVATQGPLQE 295
+ + KNRY ++ SRV L + S YINANY GY K A++ATQGP+
Sbjct: 53 IPRHGTKNRYKTILPNPLSRVCLRPKNITDSLSTYINANYIRGYSGKEKAFIATQGPMIN 112
Query: 296 TLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYC 355
T+ DFW+MVW+ S IVM+TKL+E+ KC YWP + YG + V + V E +Y
Sbjct: 113 TVNDFWQMVWQEDSPVIVMITKLKEKNE-KCVLYWPEK-RGIYGKVEVLVTGVTECDNYT 170
Query: 356 IRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVN 415
IR ++ +G S + +K +T+WPDH P+ P L + V +
Sbjct: 171 IRNLVLKQG--SHTQHVKHYWYTSWPDHKTPDSAQPLLQLMLDVEEDRLASE-------- 220
Query: 416 LPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYM 475
GP++VHCSAG+GRTGCFI +++K + VD V LR R MVQT +QY
Sbjct: 221 -GRGPVVVHCSAGIGRTGCFIATSIGCQQLKEEGVVDALSIVCQLRVDRGGMVQTSEQYE 279
Query: 476 FIHDALLE--AVLCGNT 490
F+H AL + L T
Sbjct: 280 FVHHALCLFESRLSPET 296
Score = 417 bits (1074), Expect = e-134
Identities = 100/272 (36%), Positives = 138/272 (50%), Gaps = 18/272 (6%)
Query: 734 ESIEPGQQFTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVDG-IPGSDYINANYCDGYR 792
I P + + KNRY ++ SRV L + S YINANY GY
Sbjct: 39 MEI-PMNFVDPKEIDIPRHGTKNRYKTILPNPLSRVCLRPKNITDSLSTYINANYIRGYS 97
Query: 793 -KHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGH 851
K A++ATQGP+ T+ DFW+MVW+ S IVM+TKL+E+ KC YWP + YG
Sbjct: 98 GKEKAFIATQGPMINTVNDFWQMVWQEDSPVIVMITKLKEKNE-KCVLYWPEK-RGIYGK 155
Query: 852 ITVTLQDVQELASYCIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVR 911
+ V + V E +Y IR ++ +G S + +K +T+WPDH P+ P L + V
Sbjct: 156 VEVLVTGVTECDNYTIRNLVLKQG--SHTQHVKHYWYTSWPDHKTPDSAQPLLQLMLDVE 213
Query: 912 AMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCL 971
+ GP++VHCSAG+GRTGCFI +++K + VD V L
Sbjct: 214 EDRLASE---------GRGPVVVHCSAGIGRTGCFIATSIGCQQLKEEGVVDALSIVCQL 264
Query: 972 RAQRNYMVQTEDQYMFIHDALLE--AVLCGNT 1001
R R MVQT +QY F+H AL + L T
Sbjct: 265 RVDRGGMVQTSEQYEFVHHALCLFESRLSPET 296
Score = 222 bits (567), Expect = 4e-65
Identities = 58/201 (28%), Positives = 94/201 (46%), Gaps = 35/201 (17%)
Query: 1296 KTEFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLTPVRGIE-GSDYINAS 1354
++EF ++ +P +P + KNR ILP SRVCL P + S YINA+
Sbjct: 35 QSEFMEIPMNFVDPK---EIDIPRHGTKNRYKTILPNPLSRVCLRPKNITDSLSTYINAN 91
Query: 1355 FIDGYRLRS-AYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR----------- 1402
+I GY + A+IATQGP+ +T DFW+M+W+ +S ++VM+TKLKE
Sbjct: 92 YIRGYSGKEKAFIATQGPMINTVNDFWQMVWQEDSPVIVMITKLKEKNEKCVLYWPEKRG 151
Query: 1403 -----------------YVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFI 1445
Y +R + + + ++ ++ + WP+ P S + +
Sbjct: 152 IYGKVEVLVTGVTECDNYTIRNLVLK--QGSHTQHVKHYWYTSWPDHKTPDSAQPLLQLM 209
Query: 1446 GQVHKTKEQFGQDGPITVHCS 1466
V + + GP+ VHCS
Sbjct: 210 LDVEEDRLASEGRGPVVVHCS 230
Score = 189 bits (481), Expect = 1e-53
Identities = 44/139 (31%), Positives = 66/139 (47%), Gaps = 3/139 (2%)
Query: 1504 EKCHQYWPSERSIRYEWFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQLIDWPEQ 1563
EKC YWP E+ Y V Y +R + + + ++ ++ + WP+
Sbjct: 140 EKCVLYWP-EKRGIYGKVEVLVTGVTECDNYTIRNLVLK--QGSHTQHVKHYWYTSWPDH 196
Query: 1564 GVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVID 1623
P S + + V + + GP+ VHCSAG+GRTG FI SI ++++ EGV+D
Sbjct: 197 KTPDSAQPLLQLMLDVEEDRLASEGRGPVVVHCSAGIGRTGCFIATSIGCQQLKEEGVVD 256
Query: 1624 LFQTVRILRTQRPAMVQTE 1642
V LR R MVQT
Sbjct: 257 ALSIVCQLRVDRGGMVQTS 275
Score = 118 bits (298), Expect = 3e-29
Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 657 GIPGR-DGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVID 715
P + + V + + GP+ VHCSAG+GRTG FI SI ++++ EGV+D
Sbjct: 197 KTPDSAQPLLQLMLDVEEDRLASEGRGPVVVHCSAGIGRTGCFIATSIGCQQLKEEGVVD 256
Query: 716 LFQTVRILRTQRPAMVQTE 734
V LR R MVQT
Sbjct: 257 ALSIVCQLRVDRGGMVQTS 275
Score = 79.2 bits (196), Expect = 7e-16
Identities = 11/61 (18%), Positives = 18/61 (29%), Gaps = 2/61 (3%)
Query: 603 KANDNLKFSQEYESIEPGQQFTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVDG-IPGR 661
+ E+ I P + + KNRY ++ SRV L +
Sbjct: 27 VVASSHLLQSEFMEI-PMNFVDPKEIDIPRHGTKNRYKTILPNPLSRVCLRPKNITDSLS 85
Query: 662 D 662
Sbjct: 86 T 86
Score = 77.3 bits (191), Expect = 4e-15
Identities = 22/74 (29%), Positives = 28/74 (37%), Gaps = 30/74 (40%)
Query: 1729 GPLIVHCSAGVGRTGCFIVIDA------------------------------KEQYQFCY 1758
GP++VHCSAG+GRTGCFI EQY+F +
Sbjct: 223 GPVVVHCSAGIGRTGCFIATSIGCQQLKEEGVVDALSIVCQLRVDRGGMVQTSEQYEFVH 282
Query: 1759 HAALEYLGSFDHYT 1772
HA + T
Sbjct: 283 HALCLFESRLSPET 296
Score = 60.4 bits (147), Expect = 1e-09
Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 12/88 (13%)
Query: 479 DALLEAVLCGNTEIPARSLHVHIQKLMSMEVGDTSTGMELEFKKLSNIRAEPSRFISASL 538
+E + + + L + +S ++ EF ++ +P +
Sbjct: 6 KVAMEYLQSASRVLTRSQLRDVV---------ASSHLLQSEFMEIPMNFVDPK---EIDI 53
Query: 539 PCNKHKNRLVHILPVESSRVCLTPVRGD 566
P + KNR ILP SRVCL P
Sbjct: 54 PRHGTKNRYKTILPNPLSRVCLRPKNIT 81
Score = 42.6 bits (101), Expect = 8e-04
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 561 TPVRGDGFIDFIGQVHKTKEQFGQDGPITVHCS 593
TP + + V + + GP+ VHCS
Sbjct: 198 TPDSAQPLLQLMLDVEEDRLASEGRGPVVVHCS 230
>3ps5_A Tyrosine-protein phosphatase non-receptor type 6; SH2, PTP,
hydrolase, signaling protein; 3.10A {Homo sapiens}
Length = 595
Score = 445 bits (1146), Expect = e-139
Identities = 121/428 (28%), Positives = 172/428 (40%), Gaps = 60/428 (14%)
Query: 659 PGRDGFIDFIGQVHKTKEQFGQD-----GPITVHCSAGVGRTGVFITLSIVLERMQYEGV 713
DF+ V + + G I V C G G T + + +++
Sbjct: 137 ESLSQPGDFVLSVLSDQPKAGPGSPLRVTHIKVMCEGGRYTVGGLETFDSLTDLVEHFKK 196
Query: 714 IDLFQTVRILRTQRPAMVQT-----------------------------------ESIEP 738
+ + R T + E
Sbjct: 197 TGIEEASGAFVYLRQPYYATRVNAADIENRVLELNKKQESEDTAKAGFWEEFESLQKQEV 256
Query: 739 GQQFTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVDG-IPGSDYINANYCDGY-----R 792
NK KNRY N++ +DHSRVIL D IPGSDYINANY
Sbjct: 257 KNLHQRLEGQRPENKGKNRYKNILPFDHSRVILQGRDSNIPGSDYINANYIKNQLLGPDE 316
Query: 793 KHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG-TETYGH 851
Y+A+QG L+ T+ DFW+M W+ S IVM T+ E+ R KC YWP G YG
Sbjct: 317 NAKTYIASQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCVPYWPEVGMQRAYGP 376
Query: 852 ITVTLQDVQELASYCIRTFMI-NKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRV 910
+VT + Y +RT + REI Q+ +WPDHGVP P L FL ++
Sbjct: 377 YSVTNCGEHDTTEYKLRTLQVSPLDNGDLIREIWHYQYLSWPDHGVPSEPGGVLSFLDQI 436
Query: 911 RAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKH---DKTVDIYGH 967
GP+IVH SAG+GRTG IVID ++E I D +DI
Sbjct: 437 NQRQESLPH---------AGPIIVHSSAGIGRTGTIIVIDMLMENISTKGLDCDIDIQKT 487
Query: 968 VTCLRAQRNYMVQTEDQYMFIHDALLEAVLCGNTEIPASSQMITRKDDPTVSLQDPYIAA 1027
+ +RAQR+ MVQTE QY FI+ A+ + + ++ ++ + P +
Sbjct: 488 IQMVRAQRSGMVQTEAQYKFIYVAIAQFIETTKKKLEVLQSQKGQESEYGNITYPPAMKN 547
Query: 1028 KFSQRNIP 1035
++ +
Sbjct: 548 AHAKASRT 555
Score = 444 bits (1143), Expect = e-139
Identities = 128/397 (32%), Positives = 180/397 (45%), Gaps = 39/397 (9%)
Query: 180 VEMRRLNFQTPGMVSHPPIPISRLAQHIENLKANDNLKFSQEYESI---EPGQQFTWDHS 236
V +R+ + T + + L + E+ + F +E+ES+ E
Sbjct: 207 VYLRQPYYATRVNAADIENRVLELNKKQES-EDTAKAGFWEEFESLQKQEVKNLHQRLEG 265
Query: 237 SMEMNKAKNRYANVIAYDHSRVILSTVDG-IPGSDYINANYCDGY-----RKHNAYVATQ 290
NK KNRY N++ +DHSRVIL D IPGSDYINANY Y+A+Q
Sbjct: 266 QRPENKGKNRYKNILPFDHSRVILQGRDSNIPGSDYINANYIKNQLLGPDENAKTYIASQ 325
Query: 291 GPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG-TETYGHITVTLQDVQ 349
G L+ T+ DFW+M W+ S IVM T+ E+ R KC YWP G YG +VT
Sbjct: 326 GCLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCVPYWPEVGMQRAYGPYSVTNCGEH 385
Query: 350 ELASYCIRTFMI-NKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNS 408
+ Y +RT + REI Q+ +WPDHGVP P L FL ++
Sbjct: 386 DTTEYKLRTLQVSPLDNGDLIREIWHYQYLSWPDHGVPSEPGGVLSFLDQINQRQESLPH 445
Query: 409 LESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKH---DKTVDIYGHVTCLRAQRN 465
GP+IVH SAG+GRTG IVID ++E I D +DI + +RAQR+
Sbjct: 446 ---------AGPIIVHSSAGIGRTGTIIVIDMLMENISTKGLDCDIDIQKTIQMVRAQRS 496
Query: 466 YMVQTEDQYMFIHDALLEAVLCGNTEIPARSLHVHIQKLMSMEVGDTSTGMELEFKKLSN 525
MVQTE QY FI+ A+ + + ++ G E E+ ++
Sbjct: 497 GMVQTEAQYKFIYVAIAQFIETTKKKLEVLQSQ---------------KGQESEYGNITY 541
Query: 526 IRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLTP 562
A + AS +KHK + L ++ R
Sbjct: 542 PPAMKNAHAKASRTSSKHKEDVYENLHTKNKREEKVK 578
Score = 221 bits (565), Expect = 2e-61
Identities = 67/208 (32%), Positives = 94/208 (45%), Gaps = 39/208 (18%)
Query: 1298 EFKKLSNIRAEP-SRFISASLPCNKHKNRLVHILPVESSRVCLTPVRG-IEGSDYINASF 1355
EF+ L + + + P NK KNR +ILP + SRV L I GSDYINA++
Sbjct: 247 EFESLQKQEVKNLHQRLEGQRPENKGKNRYKNILPFDHSRVILQGRDSNIPGSDYINANY 306
Query: 1356 IDGYRLRS-----AYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR-------- 1402
I L YIA+QG L T DFW+M W+ NS ++VM T+ E GR
Sbjct: 307 IKNQLLGPDENAKTYIASQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCVPYWP 366
Query: 1403 -----------------------YVLREFKVTDARDA-TSRTLRQFQLIDWPEQGVPKSG 1438
Y LR +V+ + R + +Q + WP+ GVP
Sbjct: 367 EVGMQRAYGPYSVTNCGEHDTTEYKLRTLQVSPLDNGDLIREIWHYQYLSWPDHGVPSEP 426
Query: 1439 DGFIDFIGQVHKTKEQFGQDGPITVHCS 1466
G + F+ Q+++ +E GPI VH S
Sbjct: 427 GGVLSFLDQINQRQESLPHAGPIIVHSS 454
Score = 202 bits (515), Expect = 6e-55
Identities = 49/145 (33%), Positives = 81/145 (55%), Gaps = 5/145 (3%)
Query: 1503 QEKCHQYWPSE-RSIRYEWFVVEPIAEYNMPQYVLREFKVTDARDA-TSRTLRQFQLIDW 1560
+ KC YWP Y + V E++ +Y LR +V+ + R + +Q + W
Sbjct: 358 RNKCVPYWPEVGMQRAYGPYSVTNCGEHDTTEYKLRTLQVSPLDNGDLIREIWHYQYLSW 417
Query: 1561 PEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEG 1620
P+ GVP G + F+ Q+++ +E GPI VH SAG+GRTG I + +++E + +G
Sbjct: 418 PDHGVPSEPGGVLSFLDQINQRQESLPHAGPIIVHSSAGIGRTGTIIVIDMLMENISTKG 477
Query: 1621 V---IDLFQTVRILRTQRPAMVQTE 1642
+ ID+ +T++++R QR MVQTE
Sbjct: 478 LDCDIDIQKTIQMVRAQRSGMVQTE 502
Score = 181 bits (460), Expect = 6e-48
Identities = 40/244 (16%), Positives = 68/244 (27%), Gaps = 25/244 (10%)
Query: 326 CDQYWPSRGT-ETYGHITVTLQDVQELASYCIRTFMINKGADSERREIKQLQFTAWPDHG 384
+ Y +G + + L+ + + + + + Q + W
Sbjct: 76 VEYYTQQQGVLQDRDGTIIHLKYPLNCSDPTSERWYHGHMSGGQAETLLQAKGEPW-TFL 134
Query: 385 VPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIER 444
V E + F+ V + P V + V C G G D++ +
Sbjct: 135 VRESLSQPGDFVLSVLSDQPKAGPGSPLRV----THIKVMCEGGRYTVGGLETFDSLTDL 190
Query: 445 IKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLEAVLCGNTEIPARSLHVHIQKL 504
++H K I R T I + V
Sbjct: 191 VEHFKKTGIEEASGAFVYLRQPYYATRVNAADIEN------------------RVLELNK 232
Query: 505 MSMEVGDTSTGMELEFKKLSNIRAEP-SRFISASLPCNKHKNRLVHILPVESSRVCLTPV 563
G EF+ L + + + P NK KNR +ILP + SRV L
Sbjct: 233 KQESEDTAKAGFWEEFESLQKQEVKNLHQRLEGQRPENKGKNRYKNILPFDHSRVILQGR 292
Query: 564 RGDG 567
+
Sbjct: 293 DSNI 296
Score = 143 bits (362), Expect = 2e-35
Identities = 26/174 (14%), Positives = 50/174 (28%), Gaps = 6/174 (3%)
Query: 837 CDQYWPSRGT-ETYGHITVTLQDVQELASYCIRTFMINKGADSERREIKQLQFTAWPDHG 895
+ Y +G + + L+ + + + + + Q + W
Sbjct: 76 VEYYTQQQGVLQDRDGTIIHLKYPLNCSDPTSERWYHGHMSGGQAETLLQAKGEPW-TFL 134
Query: 896 VPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIER 955
V E + F+ V + P V + V C G G D++ +
Sbjct: 135 VRESLSQPGDFVLSVLSDQPKAGPGSPLRV----THIKVMCEGGRYTVGGLETFDSLTDL 190
Query: 956 IKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLEAVLCGNTEIPASSQM 1009
++H K I R T I + +LE +E A +
Sbjct: 191 VEHFKKTGIEEASGAFVYLRQPYYATRVNAADIENRVLELNKKQESEDTAKAGF 244
Score = 121 bits (305), Expect = 3e-28
Identities = 32/83 (38%), Positives = 54/83 (65%), Gaps = 4/83 (4%)
Query: 657 GIPGR-DGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGV-- 713
G+P G + F+ Q+++ +E GPI VH SAG+GRTG I + +++E + +G+
Sbjct: 421 GVPSEPGGVLSFLDQINQRQESLPHAGPIIVHSSAGIGRTGTIIVIDMLMENISTKGLDC 480
Query: 714 -IDLFQTVRILRTQRPAMVQTES 735
ID+ +T++++R QR MVQTE+
Sbjct: 481 DIDIQKTIQMVRAQRSGMVQTEA 503
Score = 102 bits (256), Expect = 3e-22
Identities = 21/145 (14%), Positives = 40/145 (27%), Gaps = 7/145 (4%)
Query: 1504 EKCHQYWPSERSIRYEW-FVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQLIDWPE 1562
E Y + ++ ++ N + + TL Q + W
Sbjct: 74 ELVEYYTQQQGVLQDRDGTIIHLKYPLNCSDPTSERWYHGHMSGGQAETLLQAKGEPW-T 132
Query: 1563 QGVPKSGDGFIDFIGQVHKTKEQFGQD-----GPITVHCSAGVGRTGVFITLSIVLERMQ 1617
V +S DF+ V + + G I V C G G T + + ++
Sbjct: 133 FLVRESLSQPGDFVLSVLSDQPKAGPGSPLRVTHIKVMCEGGRYTVGGLETFDSLTDLVE 192
Query: 1618 YEGVIDLFQTVRILRTQRPAMVQTE 1642
+ + + R T
Sbjct: 193 HFKKTGIEEASGAFVYLRQPYYATR 217
Score = 72.3 bits (177), Expect = 9e-13
Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 33/74 (44%)
Query: 1729 GPLIVHCSAGVGRTGCFIVIDA---------------------------------KEQYQ 1755
GP+IVH SAG+GRTG IVID + QY+
Sbjct: 447 GPIIVHSSAGIGRTGTIIVIDMLMENISTKGLDCDIDIQKTIQMVRAQRSGMVQTEAQYK 506
Query: 1756 FCYHAALEYLGSFD 1769
F Y A +++ +
Sbjct: 507 FIYVAIAQFIETTK 520
Score = 62.3 bits (151), Expect = 1e-09
Identities = 28/96 (29%), Positives = 38/96 (39%), Gaps = 5/96 (5%)
Query: 571 FIGQVHKTKEQFGQDGPITVHCSRLAQHIENLKANDNLKFSQEYESI---EPGQQFTWDH 627
F+ I L + E+ + F +E+ES+ E
Sbjct: 206 FVYLRQPYYATRVNAADIENRVLELNKKQES-EDTAKAGFWEEFESLQKQEVKNLHQRLE 264
Query: 628 SSMEMNKAKNRYANVIAYDHSRVILSTVDG-IPGRD 662
NK KNRY N++ +DHSRVIL D IPG D
Sbjct: 265 GQRPENKGKNRYKNILPFDHSRVILQGRDSNIPGSD 300
Score = 53.8 bits (129), Expect = 4e-07
Identities = 14/75 (18%), Positives = 27/75 (36%)
Query: 1227 LHVHIQKLMSMEVGDTSTGMELEFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESS 1286
+EV + G E E+ ++ A + AS +KHK + L ++
Sbjct: 513 AQFIETTKKKLEVLQSQKGQESEYGNITYPPAMKNAHAKASRTSSKHKEDVYENLHTKNK 572
Query: 1287 RVCLTPVRGKTEFKK 1301
R + + +K
Sbjct: 573 REEKVKKQRSADKEK 587
Score = 52.6 bits (126), Expect = 9e-07
Identities = 10/41 (24%), Positives = 13/41 (31%), Gaps = 3/41 (7%)
Query: 1710 VLLFILKSSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDA 1750
VL K+ S V + V C G G D+
Sbjct: 149 VLSDQPKAGPGSPL---RVTHIKVMCEGGRYTVGGLETFDS 186
Score = 46.8 bits (111), Expect = 6e-05
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 561 TPVRGDGFIDFIGQVHKTKEQFGQDGPITVHCS 593
P G + F+ Q+++ +E GPI VH S
Sbjct: 422 VPSEPGGVLSFLDQINQRQESLPHAGPIIVHSS 454
Score = 44.9 bits (106), Expect = 2e-04
Identities = 9/45 (20%), Positives = 18/45 (40%)
Query: 1297 TEFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLTP 1341
+E+ ++ A + AS +KHK + L ++ R
Sbjct: 534 SEYGNITYPPAMKNAHAKASRTSSKHKEDVYENLHTKNKREEKVK 578
>3b7o_A Tyrosine-protein phosphatase non-receptor type 11; SHP2, PTPN11,
tyrosine phosphatase, structural genomics, STR genomics
consortium, SGC, deafness; 1.60A {Homo sapiens} PDB:
3jrl_A* 3mow_A* 3o5x_A*
Length = 316
Score = 433 bits (1116), Expect = e-139
Identities = 107/309 (34%), Positives = 155/309 (50%), Gaps = 29/309 (9%)
Query: 197 PIPISRLAQHIENL---KANDNLKFSQEYESI---EPGQQFTWDHSSMEMNKAKNRYANV 250
+ + + +++ F +E+E++ E ++ + NK KNRY N+
Sbjct: 10 GVDLGTENLYFQSMAETTDKVKQGFWEEFETLQQQECKLLYSRKEGQRQENKNKNRYKNI 69
Query: 251 IAYDHSRVILSTVD-GIPGSDYINANY--------CDGYRKHNAYVATQGPLQETLGDFW 301
+ +DH+RV+L D P SDYINAN C+ + +Y+ATQG LQ T+ DFW
Sbjct: 70 LPFDHTRVVLHDGDPNEPVSDYINANIIMPEFETKCNNSKPKKSYIATQGCLQNTVNDFW 129
Query: 302 RMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG-TETYGHITVTLQDVQELASYCIRTFM 360
RMV++ S IVM TK ER + KC +YWP + YG + V Y +R
Sbjct: 130 RMVFQENSRVIVMTTKEVERGKSKCVKYWPDEYALKEYGVMRVRNVKESAAHDYTLRELK 189
Query: 361 I-NKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVG 419
+ G + R + Q F WPDHGVP P L FL V G
Sbjct: 190 LSKVGQGNTERTVWQYHFRTWPDHGVPSDPGGVLDFLEEVHHKQESIMD---------AG 240
Query: 420 PLIVHCSAGVGRTGCFIVIDAMIERIKHDKT---VDIYGHVTCLRAQRNYMVQTEDQYMF 476
P++VHCSAG+GRTG FIVID +I+ I+ +D+ + +R+QR+ MVQTE QY F
Sbjct: 241 PVVVHCSAGIGRTGTFIVIDILIDIIREKGVDCDIDVPKTIQMVRSQRSGMVQTEAQYRF 300
Query: 477 IHDALLEAV 485
I+ A+ +
Sbjct: 301 IYMAVQHYI 309
Score = 413 bits (1064), Expect = e-132
Identities = 104/276 (37%), Positives = 142/276 (51%), Gaps = 23/276 (8%)
Query: 735 SIEPGQQFTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVD-GIPGSDYINANY------ 787
E ++ + NK KNRY N++ +DH+RV+L D P SDYINAN
Sbjct: 43 QQECKLLYSRKEGQRQENKNKNRYKNILPFDHTRVVLHDGDPNEPVSDYINANIIMPEFE 102
Query: 788 --CDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRG 845
C+ + +Y+ATQG LQ T+ DFWRMV++ S IVM TK ER + KC +YWP
Sbjct: 103 TKCNNSKPKKSYIATQGCLQNTVNDFWRMVFQENSRVIVMTTKEVERGKSKCVKYWPDEY 162
Query: 846 -TETYGHITVTLQDVQELASYCIRTFMI-NKGADSERREIKQLQFTAWPDHGVPEHPAPF 903
+ YG + V Y +R + G + R + Q F WPDHGVP P
Sbjct: 163 ALKEYGVMRVRNVKESAAHDYTLRELKLSKVGQGNTERTVWQYHFRTWPDHGVPSDPGGV 222
Query: 904 LLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKT-- 961
L FL V GP++VHCSAG+GRTG FIVID +I+ I+
Sbjct: 223 LDFLEEVHHKQESIMD---------AGPVVVHCSAGIGRTGTFIVIDILIDIIREKGVDC 273
Query: 962 -VDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLEAV 996
+D+ + +R+QR+ MVQTE QY FI+ A+ +
Sbjct: 274 DIDVPKTIQMVRSQRSGMVQTEAQYRFIYMAVQHYI 309
Score = 217 bits (554), Expect = 5e-63
Identities = 68/211 (32%), Positives = 96/211 (45%), Gaps = 42/211 (19%)
Query: 1298 EFKKLSNIRAEPSR-FISASLPCNKHKNRLVHILPVESSRVCLTPVR-GIEGSDYINASF 1355
EF+ L + NK+KNR +ILP + +RV L SDYINA+
Sbjct: 37 EFETLQQQECKLLYSRKEGQRQENKNKNRYKNILPFDHTRVVLHDGDPNEPVSDYINANI 96
Query: 1356 I--------DGYRLRSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR----- 1402
I + + + +YIATQG L +T DFWRM+++ NS ++VM TK E G+
Sbjct: 97 IMPEFETKCNNSKPKKSYIATQGCLQNTVNDFWRMVFQENSRVIVMTTKEVERGKSKCVK 156
Query: 1403 --------------------------YVLREFKVTDARDA-TSRTLRQFQLIDWPEQGVP 1435
Y LRE K++ T RT+ Q+ WP+ GVP
Sbjct: 157 YWPDEYALKEYGVMRVRNVKESAAHDYTLRELKLSKVGQGNTERTVWQYHFRTWPDHGVP 216
Query: 1436 KSGDGFIDFIGQVHKTKEQFGQDGPITVHCS 1466
G +DF+ +VH +E GP+ VHCS
Sbjct: 217 SDPGGVLDFLEEVHHKQESIMDAGPVVVHCS 247
Score = 191 bits (487), Expect = 4e-54
Identities = 57/145 (39%), Positives = 87/145 (60%), Gaps = 5/145 (3%)
Query: 1503 QEKCHQYWPSERSI-RYEWFVVEPIAEYNMPQYVLREFKVTDARDA-TSRTLRQFQLIDW 1560
+ KC +YWP E ++ Y V + E Y LRE K++ T RT+ Q+ W
Sbjct: 151 KSKCVKYWPDEYALKEYGVMRVRNVKESAAHDYTLRELKLSKVGQGNTERTVWQYHFRTW 210
Query: 1561 PEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEG 1620
P+ GVP G +DF+ +VH +E GP+ VHCSAG+GRTG FI + I+++ ++ +G
Sbjct: 211 PDHGVPSDPGGVLDFLEEVHHKQESIMDAGPVVVHCSAGIGRTGTFIVIDILIDIIREKG 270
Query: 1621 V---IDLFQTVRILRTQRPAMVQTE 1642
V ID+ +T++++R+QR MVQTE
Sbjct: 271 VDCDIDVPKTIQMVRSQRSGMVQTE 295
Score = 115 bits (290), Expect = 6e-28
Identities = 36/83 (43%), Positives = 58/83 (69%), Gaps = 4/83 (4%)
Query: 657 GIPGR-DGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGV-- 713
G+P G +DF+ +VH +E GP+ VHCSAG+GRTG FI + I+++ ++ +GV
Sbjct: 214 GVPSDPGGVLDFLEEVHHKQESIMDAGPVVVHCSAGIGRTGTFIVIDILIDIIREKGVDC 273
Query: 714 -IDLFQTVRILRTQRPAMVQTES 735
ID+ +T++++R+QR MVQTE+
Sbjct: 274 DIDVPKTIQMVRSQRSGMVQTEA 296
Score = 83.1 bits (206), Expect = 4e-17
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 597 QHIENLKANDNLKFSQEYESI---EPGQQFTWDHSSMEMNKAKNRYANVIAYDHSRVILS 653
Q + F +E+E++ E ++ + NK KNRY N++ +DH+RV+L
Sbjct: 21 QSMAETTDKVKQGFWEEFETLQQQECKLLYSRKEGQRQENKNKNRYKNILPFDHTRVVLH 80
Query: 654 TVD-GIPGRD 662
D P D
Sbjct: 81 DGDPNEPVSD 90
Score = 76.2 bits (188), Expect = 9e-15
Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 2/86 (2%)
Query: 482 LEAVLCGNTEIPARSLHVHIQKLMSMEVGDTSTGMELEFKKLSNIRAEPSR-FISASLPC 540
+ ++ + + +++ Q + G EF+ L +
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSMAETT-DKVKQGFWEEFETLQQQECKLLYSRKEGQRQE 59
Query: 541 NKHKNRLVHILPVESSRVCLTPVRGD 566
NK+KNR +ILP + +RV L +
Sbjct: 60 NKNKNRYKNILPFDHTRVVLHDGDPN 85
Score = 74.3 bits (183), Expect = 5e-14
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 33/73 (45%)
Query: 1729 GPLIVHCSAGVGRTGCFIVIDA---------------------------------KEQYQ 1755
GP++VHCSAG+GRTG FIVID + QY+
Sbjct: 240 GPVVVHCSAGIGRTGTFIVIDILIDIIREKGVDCDIDVPKTIQMVRSQRSGMVQTEAQYR 299
Query: 1756 FCYHAALEYLGSF 1768
F Y A Y+ +
Sbjct: 300 FIYMAVQHYIETL 312
Score = 42.3 bits (100), Expect = 0.001
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 561 TPVRGDGFIDFIGQVHKTKEQFGQDGPITVHCS 593
P G +DF+ +VH +E GP+ VHCS
Sbjct: 215 VPSDPGGVLDFLEEVHHKQESIMDAGPVVVHCS 247
>2cjz_A Human protein tyrosine phosphatase PTPN5; protein phosphatase,
STEP, hydrolase; HET: PTR; 1.70A {Homo sapiens} PDB:
2bij_A 2bv5_A*
Length = 305
Score = 432 bits (1112), Expect = e-139
Identities = 98/301 (32%), Positives = 142/301 (47%), Gaps = 19/301 (6%)
Query: 189 TPGMVSHPPIPISRLAQHIENL----KANDNLKFSQEYESIEPGQQFTWDHSSMEMNKAK 244
+ + + +++ ++ KA D E+ I P + K
Sbjct: 9 SGVDLGTENLYFQSMSRVLQAEELHEKALDPFLLQAEFFEI-PMNFVDPKEYDIPGLVRK 67
Query: 245 NRYANVIAYDHSRVILSTVDG-IPGSDYINANYCDGYR-KHNAYVATQGPLQETLGDFWR 302
NRY ++ HSRV L++ D P S YINANY GY + Y+ATQGP+ T+ DFWR
Sbjct: 68 NRYKTILPNPHSRVCLTSPDPDDPLSSYINANYIRGYGGEEKVYIATQGPIVSTVADFWR 127
Query: 303 MVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDVQELASYCIRTFMIN 362
MVW+ + IVM+T +EE KC +YWP Y + +T+Q V Y +R +
Sbjct: 128 MVWQEHTPIIVMITNIEEM-NEKCTEYWPEE-QVAYDGVEITVQKVIHTEDYRLRLISLK 185
Query: 363 KGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLI 422
G +E R +K FT+WPD P+ P L +R V P+I
Sbjct: 186 SG--TEERGLKHYWFTSWPDQKTPDRAPPLLHLVREVEEAAQQEGP--------HCAPII 235
Query: 423 VHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALL 482
VH SAG+GRTGCFI ++++ + VDI LR R M+QT +QY F+H +
Sbjct: 236 VHSSAGIGRTGCFIATSICCQQLRQEGVVDILKTTCQLRQDRGGMIQTCEQYQFVHHVMS 295
Query: 483 E 483
Sbjct: 296 L 296
Score = 410 bits (1057), Expect = e-131
Identities = 94/263 (35%), Positives = 129/263 (49%), Gaps = 15/263 (5%)
Query: 734 ESIEPGQQFTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVDG-IPGSDYINANYCDGYR 792
I P + KNRY ++ HSRV L++ D P S YINANY GY
Sbjct: 47 FEI-PMNFVDPKEYDIPGLVRKNRYKTILPNPHSRVCLTSPDPDDPLSSYINANYIRGYG 105
Query: 793 -KHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGH 851
+ Y+ATQGP+ T+ DFWRMVW+ + IVM+T +EE KC +YWP Y
Sbjct: 106 GEEKVYIATQGPIVSTVADFWRMVWQEHTPIIVMITNIEEM-NEKCTEYWPEE-QVAYDG 163
Query: 852 ITVTLQDVQELASYCIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVR 911
+ +T+Q V Y +R + G +E R +K FT+WPD P+ P L +R V
Sbjct: 164 VEITVQKVIHTEDYRLRLISLKSG--TEERGLKHYWFTSWPDQKTPDRAPPLLHLVREVE 221
Query: 912 AMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCL 971
P+IVH SAG+GRTGCFI ++++ + VDI L
Sbjct: 222 EAAQQEGP--------HCAPIIVHSSAGIGRTGCFIATSICCQQLRQEGVVDILKTTCQL 273
Query: 972 RAQRNYMVQTEDQYMFIHDALLE 994
R R M+QT +QY F+H +
Sbjct: 274 RQDRGGMIQTCEQYQFVHHVMSL 296
Score = 210 bits (537), Expect = 6e-61
Identities = 61/202 (30%), Positives = 87/202 (43%), Gaps = 36/202 (17%)
Query: 1296 KTEFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLTPVRGIE-GSDYINAS 1354
+ EF ++ +P +P KNR ILP SRVCLT + S YINA+
Sbjct: 43 QAEFFEIPMNFVDPK---EYDIPGLVRKNRYKTILPNPHSRVCLTSPDPDDPLSSYINAN 99
Query: 1355 FIDGYRLRS-AYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR----------- 1402
+I GY YIATQGP+ T DFWRM+W+ ++ I+VM+T ++EM
Sbjct: 100 YIRGYGGEEKVYIATQGPIVSTVADFWRMVWQEHTPIIVMITNIEEMNEKCTEYWPEEQV 159
Query: 1403 -----------------YVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFI 1445
Y LR + R L+ + WP+Q P + +
Sbjct: 160 AYDGVEITVQKVIHTEDYRLRLISLK--SGTEERGLKHYWFTSWPDQKTPDRAPPLLHLV 217
Query: 1446 GQVHKTKEQFGQD-GPITVHCS 1466
+V + +Q G PI VH S
Sbjct: 218 REVEEAAQQEGPHCAPIIVHSS 239
Score = 187 bits (477), Expect = 7e-53
Identities = 46/140 (32%), Positives = 69/140 (49%), Gaps = 4/140 (2%)
Query: 1504 EKCHQYWPSERSIRYEWFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQLIDWPEQ 1563
EKC +YWP E + Y+ + + Y LR + R L+ + WP+Q
Sbjct: 148 EKCTEYWPEE-QVAYDGVEITVQKVIHTEDYRLRLISLK--SGTEERGLKHYWFTSWPDQ 204
Query: 1564 GVPKSGDGFIDFIGQVHKTKEQFGQD-GPITVHCSAGVGRTGVFITLSIVLERMQYEGVI 1622
P + + +V + +Q G PI VH SAG+GRTG FI SI ++++ EGV+
Sbjct: 205 KTPDRAPPLLHLVREVEEAAQQEGPHCAPIIVHSSAGIGRTGCFIATSICCQQLRQEGVV 264
Query: 1623 DLFQTVRILRTQRPAMVQTE 1642
D+ +T LR R M+QT
Sbjct: 265 DILKTTCQLRQDRGGMIQTC 284
Score = 115 bits (290), Expect = 5e-28
Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 657 GIPGR-DGFIDFIGQVHKTKEQFGQD-GPITVHCSAGVGRTGVFITLSIVLERMQYEGVI 714
P R + + +V + +Q G PI VH SAG+GRTG FI SI ++++ EGV+
Sbjct: 205 KTPDRAPPLLHLVREVEEAAQQEGPHCAPIIVHSSAGIGRTGCFIATSICCQQLRQEGVV 264
Query: 715 DLFQTVRILRTQRPAMVQTE 734
D+ +T LR R M+QT
Sbjct: 265 DILKTTCQLRQDRGGMIQTC 284
Score = 85.5 bits (212), Expect = 8e-18
Identities = 23/89 (25%), Positives = 33/89 (37%), Gaps = 3/89 (3%)
Query: 478 HDALLEAVLCGNTEIPARSLHVHIQKLMSMEVGDTSTGMELEFKKLSNIRAEPSRFISAS 537
H V G + +S+ +Q E ++ EF ++ +P
Sbjct: 4 HHHHSSGVDLGTENLYFQSMSRVLQAEELHEKALDPFLLQAEFFEIPMNFVDPK---EYD 60
Query: 538 LPCNKHKNRLVHILPVESSRVCLTPVRGD 566
+P KNR ILP SRVCLT D
Sbjct: 61 IPGLVRKNRYKTILPNPHSRVCLTSPDPD 89
Score = 85.1 bits (211), Expect = 8e-18
Identities = 23/93 (24%), Positives = 31/93 (33%), Gaps = 30/93 (32%)
Query: 1710 VLLFILKSSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDA------------------- 1750
+L + + + P+IVH SAG+GRTGCFI
Sbjct: 213 LLHLVREVEEAAQQEGPHCAPIIVHSSAGIGRTGCFIATSICCQQLRQEGVVDILKTTCQ 272
Query: 1751 -----------KEQYQFCYHAALEYLGSFDHYT 1772
EQYQF +H Y H +
Sbjct: 273 LRQDRGGMIQTCEQYQFVHHVMSLYEKQLSHQS 305
Score = 81.6 bits (202), Expect = 1e-16
Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 6/82 (7%)
Query: 586 GPITVHCSRLAQHIENL----KANDNLKFSQEYESIEPGQQFTWDHSSMEMNKAKNRYAN 641
G ++ +++ ++ KA D E+ I P + KNRY
Sbjct: 14 GTENLYFQSMSRVLQAEELHEKALDPFLLQAEFFEI-PMNFVDPKEYDIPGLVRKNRYKT 72
Query: 642 VIAYDHSRVILSTVDG-IPGRD 662
++ HSRV L++ D P
Sbjct: 73 ILPNPHSRVCLTSPDPDDPLSS 94
Score = 39.2 bits (92), Expect = 0.009
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 561 TPVRGDGFIDFIGQVHKTKEQFGQD-GPITVHCS 593
TP R + + +V + +Q G PI VH S
Sbjct: 206 TPDRAPPLLHLVREVEEAAQQEGPHCAPIIVHSS 239
Score = 31.5 bits (72), Expect = 2.4
Identities = 4/19 (21%), Positives = 5/19 (26%)
Query: 989 HDALLEAVLCGNTEIPASS 1007
H V G + S
Sbjct: 4 HHHHSSGVDLGTENLYFQS 22
>1p15_A Protein-tyrosine phosphatase alpha; transmembrane, hydrolase,
phosphorylation; 2.00A {Mus musculus} SCOP: c.45.1.2
Length = 253
Score = 423 bits (1090), Expect = e-137
Identities = 97/251 (38%), Positives = 151/251 (60%), Gaps = 10/251 (3%)
Query: 235 HSSMEMNKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQ 294
++ N KNR +I Y+ +RVI+ G +DY+NA++ DGYR+ ++Y+A+QGPL
Sbjct: 3 TGNLPANMKKNRVLQIIPYEFNRVIIPVKRGEENTDYVNASFIDGYRQKDSYIASQGPLL 62
Query: 295 ETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDVQELASY 354
T+ DFWRM+WE +S +IVM+T+LEER + KC QYWPS G +YG ITV L+ +E SY
Sbjct: 63 HTIEDFWRMIWEWKSCSIVMLTELEERGQEKCAQYWPSDGLVSYGDITVELKKEEECESY 122
Query: 355 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 414
+R ++ +++ R+I+Q F WP+ G+P + + V+ + +
Sbjct: 123 TVRDLLVTNTRENKSRQIRQFHFHGWPEVGIPSDGKGMINIIAAVQKQQQQSGN------ 176
Query: 415 NLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQY 474
P+ VHCSAG GRTG F + ++ER+K + +D++ V LR QR +MVQT +QY
Sbjct: 177 ----HPITVHCSAGAGRTGTFCALSTVLERVKAEGILDVFQTVKSLRLQRPHMVQTLEQY 232
Query: 475 MFIHDALLEAV 485
F + + E +
Sbjct: 233 EFCYKVVQEYI 243
Score = 423 bits (1090), Expect = e-137
Identities = 97/251 (38%), Positives = 151/251 (60%), Gaps = 10/251 (3%)
Query: 746 HSSMEMNKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQ 805
++ N KNR +I Y+ +RVI+ G +DY+NA++ DGYR+ ++Y+A+QGPL
Sbjct: 3 TGNLPANMKKNRVLQIIPYEFNRVIIPVKRGEENTDYVNASFIDGYRQKDSYIASQGPLL 62
Query: 806 ETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGHITVTLQDVQELASY 865
T+ DFWRM+WE +S +IVM+T+LEER + KC QYWPS G +YG ITV L+ +E SY
Sbjct: 63 HTIEDFWRMIWEWKSCSIVMLTELEERGQEKCAQYWPSDGLVSYGDITVELKKEEECESY 122
Query: 866 CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGV 925
+R ++ +++ R+I+Q F WP+ G+P + + V+ + +
Sbjct: 123 TVRDLLVTNTRENKSRQIRQFHFHGWPEVGIPSDGKGMINIIAAVQKQQQQSGN------ 176
Query: 926 NLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQY 985
P+ VHCSAG GRTG F + ++ER+K + +D++ V LR QR +MVQT +QY
Sbjct: 177 ----HPITVHCSAGAGRTGTFCALSTVLERVKAEGILDVFQTVKSLRLQRPHMVQTLEQY 232
Query: 986 MFIHDALLEAV 996
F + + E +
Sbjct: 233 EFCYKVVQEYI 243
Score = 240 bits (615), Expect = 4e-72
Identities = 79/183 (43%), Positives = 106/183 (57%), Gaps = 31/183 (16%)
Query: 1314 SASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFIDGYRLRSAYIATQGPLA 1373
+ +LP N KNR++ I+P E +RV + RG E +DY+NASFIDGYR + +YIA+QGPL
Sbjct: 3 TGNLPANMKKNRVLQIIPYEFNRVIIPVKRGEENTDYVNASFIDGYRQKDSYIASQGPLL 62
Query: 1374 DTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------------------------Y 1403
T EDFWRM+WE S +VMLT+L+E G+ Y
Sbjct: 63 HTIEDFWRMIWEWKSCSIVMLTELEERGQEKCAQYWPSDGLVSYGDITVELKKEEECESY 122
Query: 1404 VLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITV 1463
+R+ VT+ R+ SR +RQF WPE G+P G G I+ I V K ++Q G + PITV
Sbjct: 123 TVRDLLVTNTRENKSRQIRQFHFHGWPEVGIPSDGKGMINIIAAVQKQQQQSG-NHPITV 181
Query: 1464 HCS 1466
HCS
Sbjct: 182 HCS 184
Score = 213 bits (545), Expect = 1e-62
Identities = 72/140 (51%), Positives = 90/140 (64%), Gaps = 1/140 (0%)
Query: 1503 QEKCHQYWPSERSIRYEWFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQLIDWPE 1562
QEKC QYWPS+ + Y VE E Y +R+ VT+ R+ SR +RQF WPE
Sbjct: 91 QEKCAQYWPSDGLVSYGDITVELKKEEECESYTVRDLLVTNTRENKSRQIRQFHFHGWPE 150
Query: 1563 QGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVI 1622
G+P G G I+ I V K ++Q G + PITVHCSAG GRTG F LS VLER++ EG++
Sbjct: 151 VGIPSDGKGMINIIAAVQKQQQQSG-NHPITVHCSAGAGRTGTFCALSTVLERVKAEGIL 209
Query: 1623 DLFQTVRILRTQRPAMVQTE 1642
D+FQTV+ LR QRP MVQT
Sbjct: 210 DVFQTVKSLRLQRPHMVQTL 229
Score = 125 bits (317), Expect = 4e-32
Identities = 52/106 (49%), Positives = 67/106 (63%), Gaps = 8/106 (7%)
Query: 657 GIPGR-DGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVID 715
GIP G I+ I V K ++Q G + PITVHCSAG GRTG F LS VLER++ EG++D
Sbjct: 152 GIPSDGKGMINIIAAVQKQQQQSG-NHPITVHCSAGAGRTGTFCALSTVLERVKAEGILD 210
Query: 716 LFQTVRILRTQRPAMVQTESIEPGQQFTWDHSS-MEMNKAKNRYAN 760
+FQTV+ LR QRP MVQT +Q+ + + E A + YAN
Sbjct: 211 VFQTVKSLRLQRPHMVQTL-----EQYEFCYKVVQEYIDAFSDYAN 251
Score = 86.1 bits (214), Expect = 2e-18
Identities = 23/75 (30%), Positives = 28/75 (37%), Gaps = 30/75 (40%)
Query: 1729 GPLIVHCSAGVGRTGCFIVIDA------------------------------KEQYQFCY 1758
P+ VHCSAG GRTG F + EQY+FCY
Sbjct: 177 HPITVHCSAGAGRTGTFCALSTVLERVKAEGILDVFQTVKSLRLQRPHMVQTLEQYEFCY 236
Query: 1759 HAALEYLGSFDHYTN 1773
EY+ +F Y N
Sbjct: 237 KVVQEYIDAFSDYAN 251
Score = 61.8 bits (151), Expect = 3e-10
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 627 HSSMEMNKAKNRYANVIAYDHSRVILSTVDGIPGRD 662
++ N KNR +I Y+ +RVI+ G D
Sbjct: 3 TGNLPANMKKNRVLQIIPYEFNRVIIPVKRGEENTD 38
Score = 51.8 bits (125), Expect = 6e-07
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 535 SASLPCNKHKNRLVHILPVESSRVCLTPVRGDGFIDFI 572
+ +LP N KNR++ I+P E +RV + RG+ D++
Sbjct: 3 TGNLPANMKKNRVLQIIPYEFNRVIIPVKRGEENTDYV 40
Score = 43.3 bits (103), Expect = 4e-04
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 561 TPVRGDGFIDFIGQVHKTKEQFGQDGPITVHCS 593
P G G I+ I V K ++Q G + PITVHCS
Sbjct: 153 IPSDGKGMINIIAAVQKQQQQSG-NHPITVHCS 184
>3m4u_A Tyrosine specific protein phosphatase, putative; protein tyrosine
phosphatase, hydrolase; 2.39A {Trypanosoma brucei}
Length = 306
Score = 421 bits (1084), Expect = e-135
Identities = 80/329 (24%), Positives = 140/329 (42%), Gaps = 44/329 (13%)
Query: 192 MVSHPPIPISRLAQHIENLKANDNLKFSQEYESIEPGQQ-FTWDHSSMEMNKAKNRYANV 250
M + P+++L+ + + +E+ ++ + + ++ N+ KNRY ++
Sbjct: 1 MSTAKSFPMAQLSTRAQYSR------MQREFVQLQRQENPRNINFTTSLKNRHKNRYLDI 54
Query: 251 IAYDHSRV--ILSTVDGIPGS-DYINANYCDGYRKHNAYVATQGPLQETLGDFWRMVWEL 307
+A + + +L V PG YIN N D + +VA Q P+ + + DF + E
Sbjct: 55 LANEETIYPPVLKAVGAQPGRYPYINGNLID-LDLPHTFVACQAPVPQGVPDFLETLSEK 113
Query: 308 RSVTIVMMTKLEERTRIKCDQYWPSRGTET-----YGHITVTLQDVQELA-------SYC 355
+ +VM+TKL E +K ++YWP ++ GH + + E +
Sbjct: 114 KVDLVVMLTKLREGGVLKAERYWPEEEEDSLSFPESGHDAIKVTRDAEASYEVDAELDIV 173
Query: 356 IRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVN 415
R +I+ + Q+Q+ WPDHGVPE A F L ++
Sbjct: 174 RRPLVIHVP-GKPMHRVLQVQYVGWPDHGVPESAASFDELLSVIKNCVTT---------- 222
Query: 416 LPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVD--IYGHVTCLRAQRNYMVQTEDQ 473
P++VHCSAG+GRTG I A + I+ D +Y V ++ +R MVQ +Q
Sbjct: 223 ---SPILVHCSAGIGRTGTLIGAYAALLHIERGILTDSTVYSIVAAMKQKRFGMVQRLEQ 279
Query: 474 YMFIHDALLEAVLCGNTEIPARSLHVHIQ 502
Y I+ +L + L +
Sbjct: 280 YAVIYMTVLGR-----LGVDISGLVSTLN 303
Score = 400 bits (1029), Expect = e-127
Identities = 75/294 (25%), Positives = 130/294 (44%), Gaps = 33/294 (11%)
Query: 734 ESIEPGQQ-FTWDHSSMEMNKAKNRYANVIAYDHSRV--ILSTVDGIPGS-DYINANYCD 789
++ + + ++ N+ KNRY +++A + + +L V PG YIN N D
Sbjct: 26 VQLQRQENPRNINFTTSLKNRHKNRYLDILANEETIYPPVLKAVGAQPGRYPYINGNLID 85
Query: 790 GYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTET- 848
+ +VA Q P+ + + DF + E + +VM+TKL E +K ++YWP ++
Sbjct: 86 -LDLPHTFVACQAPVPQGVPDFLETLSEKKVDLVVMLTKLREGGVLKAERYWPEEEEDSL 144
Query: 849 ----YGHITVTLQDVQELA-------SYCIRTFMINKGADSERREIKQLQFTAWPDHGVP 897
GH + + E + R +I+ + Q+Q+ WPDHGVP
Sbjct: 145 SFPESGHDAIKVTRDAEASYEVDAELDIVRRPLVIHVP-GKPMHRVLQVQYVGWPDHGVP 203
Query: 898 EHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIK 957
E A F L ++ P++VHCSAG+GRTG I A + I+
Sbjct: 204 ESAASFDELLSVIKNCVTT-------------SPILVHCSAGIGRTGTLIGAYAALLHIE 250
Query: 958 HDKTVD--IYGHVTCLRAQRNYMVQTEDQYMFIHDALLEAVLCGNTEIPASSQM 1009
D +Y V ++ +R MVQ +QY I+ +L + + + ++ +
Sbjct: 251 RGILTDSTVYSIVAAMKQKRFGMVQRLEQYAVIYMTVLGRLGVDISGLVSTLNL 304
Score = 196 bits (501), Expect = 4e-56
Identities = 53/213 (24%), Positives = 74/213 (34%), Gaps = 50/213 (23%)
Query: 1298 EFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSRV--CLTPVRGIEGS-DYINAS 1354
EF +L + + N+HKNR + IL E + L V G YIN +
Sbjct: 24 EFVQLQRQENPRNINF-TTSLKNRHKNRYLDILANEETIYPPVLKAVGAQPGRYPYINGN 82
Query: 1355 FIDGYRLRSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR------------ 1402
ID L ++A Q P+ DF L E +VVMLTKL+E G
Sbjct: 83 LID-LDLPHTFVACQAPVPQGVPDFLETLSEKKVDLVVMLTKLREGGVLKAERYWPEEEE 141
Query: 1403 -----------------------------YVLREFKVTDARDATSRTLRQFQLIDWPEQG 1433
++R V + Q Q + WP+ G
Sbjct: 142 DSLSFPESGHDAIKVTRDAEASYEVDAELDIVRRPLVIHVPGKPMHRVLQVQYVGWPDHG 201
Query: 1434 VPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCS 1466
VP+S F + + + PI VHCS
Sbjct: 202 VPESAASFDELLSVIKNCVTT----SPILVHCS 230
Score = 165 bits (419), Expect = 4e-45
Identities = 38/153 (24%), Positives = 58/153 (37%), Gaps = 17/153 (11%)
Query: 1503 QEKCHQYWPSERSIRYEWF-----------VVEPIAEYNMPQYVLREFKVTDARDATSRT 1551
K +YWP E + E E + ++R V
Sbjct: 129 VLKAERYWPEEEEDSLSFPESGHDAIKVTRDAEASYEVDAELDIVRRPLVIHVPGKPMHR 188
Query: 1552 LRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSI 1611
+ Q Q + WP+ GVP+S F + + + PI VHCSAG+GRTG I
Sbjct: 189 VLQVQYVGWPDHGVPESAASFDELLSVIKNCVTT----SPILVHCSAGIGRTGTLIGAYA 244
Query: 1612 VLERMQYEGVIDL--FQTVRILRTQRPAMVQTE 1642
L ++ + D + V ++ +R MVQ
Sbjct: 245 ALLHIERGILTDSTVYSIVAAMKQKRFGMVQRL 277
Score = 108 bits (271), Expect = 2e-25
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
Query: 662 DGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVIDL--FQT 719
F + + + PI VHCSAG+GRTG I L ++ + D +
Sbjct: 207 ASFDELLSVIKNCVTT----SPILVHCSAGIGRTGTLIGAYAALLHIERGILTDSTVYSI 262
Query: 720 VRILRTQRPAMVQTES 735
V ++ +R MVQ
Sbjct: 263 VAAMKQKRFGMVQRLE 278
Score = 74.3 bits (183), Expect = 3e-14
Identities = 14/71 (19%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 599 IENLKANDN-LKFSQEYESIEPGQQ-FTWDHSSMEMNKAKNRYANVIAYDHSRV--ILST 654
+ L + +E+ ++ + + ++ N+ KNRY +++A + + +L
Sbjct: 9 MAQLSTRAQYSRMQREFVQLQRQENPRNINFTTSLKNRHKNRYLDILANEETIYPPVLKA 68
Query: 655 VDGIPGRDGFI 665
V PGR +I
Sbjct: 69 VGAQPGRYPYI 79
Score = 72.3 bits (178), Expect = 2e-13
Identities = 20/71 (28%), Positives = 23/71 (32%), Gaps = 32/71 (45%)
Query: 1729 GPLIVHCSAGVGRTGCFIVIDA--------------------------------KEQYQF 1756
P++VHCSAG+GRTG I A EQY
Sbjct: 223 SPILVHCSAGIGRTGTLIGAYAALLHIERGILTDSTVYSIVAAMKQKRFGMVQRLEQYAV 282
Query: 1757 CYHAALEYLGS 1767
Y L LG
Sbjct: 283 IYMTVLGRLGV 293
Score = 47.7 bits (114), Expect = 2e-05
Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 1/64 (1%)
Query: 504 LMSMEVGDTSTGMELEFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLTPV 563
+ + + M+ EF +L + + N+HKNR + IL E +
Sbjct: 9 MAQLSTRAQYSRMQREFVQLQRQENPRNINF-TTSLKNRHKNRYLDILANEETIYPPVLK 67
Query: 564 RGDG 567
Sbjct: 68 AVGA 71
Score = 36.1 bits (84), Expect = 0.090
Identities = 8/33 (24%), Positives = 11/33 (33%), Gaps = 4/33 (12%)
Query: 561 TPVRGDGFIDFIGQVHKTKEQFGQDGPITVHCS 593
P F + + + PI VHCS
Sbjct: 202 VPESAASFDELLSVIKNCVTT----SPILVHCS 230
>2shp_A SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin signaling, SH2
protein; HET: CAT; 2.00A {Homo sapiens} SCOP: c.45.1.2
d.93.1.1 d.93.1.1
Length = 525
Score = 427 bits (1099), Expect = e-134
Identities = 114/367 (31%), Positives = 166/367 (45%), Gaps = 58/367 (15%)
Query: 679 GQDGPITVHCSAG---VGRTGVFITLSIVLERMQYEGVIDLFQTVRILRTQRPAMVQT-- 733
+ + + C VG F +L+ ++E + +++ TV L+
Sbjct: 165 SKVTHVMIRCQELKYDVGGGERFDSLTDLVEHYKKNPMVETLGTVLQLKQPLNTTRINAA 224
Query: 734 ---------------------------ESI---EPGQQFTWDHSSMEMNKAKNRYANVIA 763
E++ E ++ + NK KNRY N++
Sbjct: 225 EIESRVRELSKLAETTDKVKQGFWEEFETLQQQECKLLYSRKEGQRQENKNKNRYKNILP 284
Query: 764 YDHSRVILSTVD-GIPGSDYINANY--------CDGYRKHNAYVATQGPLQETLGDFWRM 814
+DH+RV+L D P SDYINAN C+ + +Y+ATQG LQ T+ DFWRM
Sbjct: 285 FDHTRVVLHDGDPNEPVSDYINANIIMPEFETKCNNSKPKKSYIATQGCLQNTVNDFWRM 344
Query: 815 VWELRSVTIVMMTKLEERTRIKCDQYWPS-RGTETYGHITVTLQDVQELASYCIRTFMI- 872
V++ S IVM TK ER + KC +YWP + YG + V Y +R +
Sbjct: 345 VFQENSRVIVMTTKEVERGKSKCVKYWPDEYALKEYGVMRVRNVKESAAHDYTLRELKLS 404
Query: 873 NKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPL 932
G + R + Q F WPDHGVP P L FL V GP+
Sbjct: 405 KVGQGNTERTVWQYHFRTWPDHGVPSDPGGVLDFLEEVHHKQESIMD---------AGPV 455
Query: 933 IVHCSAGVGRTGCFIVIDAMIERIKH---DKTVDIYGHVTCLRAQRNYMVQTEDQYMFIH 989
+VHCSAG+GRTG FIVID +I+ I+ D +D+ + +R+QR+ MVQTE QY I+
Sbjct: 456 VVHCSAGIGRTGTFIVIDILIDIIREKGVDCDIDVPKTIQMVRSQRSGMVQTEAQYRSIY 515
Query: 990 DALLEAV 996
A+ +
Sbjct: 516 MAVQHYI 522
Score = 424 bits (1091), Expect = e-133
Identities = 114/339 (33%), Positives = 163/339 (48%), Gaps = 33/339 (9%)
Query: 171 MTSHAPSDP-VEMRRLNFQTPGMVSHPPIPISRLAQHIENLKANDNLK------FSQEYE 223
+ H +P VE Q ++ I + + + L F +E+E
Sbjct: 193 LVEHYKKNPMVETLGTVLQLKQPLNTTRINAAEIESRVRELSKLAETTDKVKQGFWEEFE 252
Query: 224 SI---EPGQQFTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVD-GIPGSDYINANY--- 276
++ E ++ + NK KNRY N++ +DH+RV+L D P SDYINAN
Sbjct: 253 TLQQQECKLLYSRKEGQRQENKNKNRYKNILPFDHTRVVLHDGDPNEPVSDYINANIIMP 312
Query: 277 -----CDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWP 331
C+ + +Y+ATQG LQ T+ DFWRMV++ S IVM TK ER + KC +YWP
Sbjct: 313 EFETKCNNSKPKKSYIATQGCLQNTVNDFWRMVFQENSRVIVMTTKEVERGKSKCVKYWP 372
Query: 332 S-RGTETYGHITVTLQDVQELASYCIRTFMI-NKGADSERREIKQLQFTAWPDHGVPEHP 389
+ YG + V Y +R + G + R + Q F WPDHGVP P
Sbjct: 373 DEYALKEYGVMRVRNVKESAAHDYTLRELKLSKVGQGNTERTVWQYHFRTWPDHGVPSDP 432
Query: 390 APFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKH-- 447
L FL V GP++VHCSAG+GRTG FIVID +I+ I+
Sbjct: 433 GGVLDFLEEVHHKQESIMD---------AGPVVVHCSAGIGRTGTFIVIDILIDIIREKG 483
Query: 448 -DKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLEAV 485
D +D+ + +R+QR+ MVQTE QY I+ A+ +
Sbjct: 484 VDCDIDVPKTIQMVRSQRSGMVQTEAQYRSIYMAVQHYI 522
Score = 215 bits (549), Expect = 4e-60
Identities = 68/213 (31%), Positives = 96/213 (45%), Gaps = 42/213 (19%)
Query: 1296 KTEFKKLSNIRAEPS-RFISASLPCNKHKNRLVHILPVESSRVCLTPVR-GIEGSDYINA 1353
EF+ L + NK+KNR +ILP + +RV L SDYINA
Sbjct: 248 WEEFETLQQQECKLLYSRKEGQRQENKNKNRYKNILPFDHTRVVLHDGDPNEPVSDYINA 307
Query: 1354 SFI--------DGYRLRSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR--- 1402
+ I + + + +YIATQG L +T DFWRM+++ NS ++VM TK E G+
Sbjct: 308 NIIMPEFETKCNNSKPKKSYIATQGCLQNTVNDFWRMVFQENSRVIVMTTKEVERGKSKC 367
Query: 1403 ----------------------------YVLREFKVTDARDA-TSRTLRQFQLIDWPEQG 1433
Y LRE K++ T RT+ Q+ WP+ G
Sbjct: 368 VKYWPDEYALKEYGVMRVRNVKESAAHDYTLRELKLSKVGQGNTERTVWQYHFRTWPDHG 427
Query: 1434 VPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCS 1466
VP G +DF+ +VH +E GP+ VHCS
Sbjct: 428 VPSDPGGVLDFLEEVHHKQESIMDAGPVVVHCS 460
Score = 200 bits (510), Expect = 6e-55
Identities = 59/155 (38%), Positives = 91/155 (58%), Gaps = 5/155 (3%)
Query: 1493 VLIAYLVLFSQEKCHQYWPSERSIR-YEWFVVEPIAEYNMPQYVLREFKVTDARDA-TSR 1550
V+ V + KC +YWP E +++ Y V + E Y LRE K++ T R
Sbjct: 354 VMTTKEVERGKSKCVKYWPDEYALKEYGVMRVRNVKESAAHDYTLRELKLSKVGQGNTER 413
Query: 1551 TLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLS 1610
T+ Q+ WP+ GVP G +DF+ +VH +E GP+ VHCSAG+GRTG FI +
Sbjct: 414 TVWQYHFRTWPDHGVPSDPGGVLDFLEEVHHKQESIMDAGPVVVHCSAGIGRTGTFIVID 473
Query: 1611 IVLERMQYEGV---IDLFQTVRILRTQRPAMVQTE 1642
I+++ ++ +GV ID+ +T++++R+QR MVQTE
Sbjct: 474 ILIDIIREKGVDCDIDVPKTIQMVRSQRSGMVQTE 508
Score = 136 bits (344), Expect = 2e-33
Identities = 36/185 (19%), Positives = 61/185 (32%), Gaps = 35/185 (18%)
Query: 388 HPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAG---VGRTGCFIVIDAMIER 444
HP F+L +R S+ V +++ C VG F + ++E
Sbjct: 143 HPGDFVLSVRTGDDKGE------SNDGKSKVTHVMIRCQELKYDVGGGERFDSLTDLVEH 196
Query: 445 IKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLEAVLCGNTEIPARSLHVHIQKL 504
K +N MV+T + + T I A + +++L
Sbjct: 197 YK-----------------KNPMVETLGTVLQLKQP------LNTTRINAAEIESRVREL 233
Query: 505 MSME--VGDTSTGMELEFKKLSNIRAEPS-RFISASLPCNKHKNRLVHILPVESSRVCLT 561
+ G EF+ L + NK+KNR +ILP + +RV L
Sbjct: 234 SKLAETTDKVKQGFWEEFETLQQQECKLLYSRKEGQRQENKNKNRYKNILPFDHTRVVLH 293
Query: 562 PVRGD 566
+
Sbjct: 294 DGDPN 298
Score = 120 bits (302), Expect = 4e-28
Identities = 36/83 (43%), Positives = 58/83 (69%), Gaps = 4/83 (4%)
Query: 657 GIPGR-DGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGV-- 713
G+P G +DF+ +VH +E GP+ VHCSAG+GRTG FI + I+++ ++ +GV
Sbjct: 427 GVPSDPGGVLDFLEEVHHKQESIMDAGPVVVHCSAGIGRTGTFIVIDILIDIIREKGVDC 486
Query: 714 -IDLFQTVRILRTQRPAMVQTES 735
ID+ +T++++R+QR MVQTE+
Sbjct: 487 DIDVPKTIQMVRSQRSGMVQTEA 509
Score = 85.3 bits (211), Expect = 5e-17
Identities = 20/112 (17%), Positives = 34/112 (30%), Gaps = 32/112 (28%)
Query: 899 HPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAG---VGRTGCFIVIDAMIER 955
HP F+L +R S+ V +++ C VG F + ++E
Sbjct: 143 HPGDFVLSVRTGDDKGE------SNDGKSKVTHVMIRCQELKYDVGGGERFDSLTDLVEH 196
Query: 956 IKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLEAVLCGNTEIPASS 1007
K +N MV+T + + T I A+
Sbjct: 197 YK-----------------KNPMVETLGTVLQLKQP------LNTTRINAAE 225
Score = 76.4 bits (188), Expect = 4e-14
Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 13/107 (12%)
Query: 566 DGFIDFIGQVHKTKEQFGQDGPITVHCSRLAQHIENLKANDNLK------FSQEYESI-- 617
+ ++ +G V + K+ I + + + L F +E+E++
Sbjct: 200 NPMVETLGTVLQLKQPLN-TTRINA--AEIESRVRELSKLAETTDKVKQGFWEEFETLQQ 256
Query: 618 -EPGQQFTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVD-GIPGRD 662
E ++ + NK KNRY N++ +DH+RV+L D P D
Sbjct: 257 QECKLLYSRKEGQRQENKNKNRYKNILPFDHTRVVLHDGDPNEPVSD 303
Score = 75.7 bits (186), Expect = 7e-14
Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 33/73 (45%)
Query: 1729 GPLIVHCSAGVGRTGCFIVIDA---------------------------------KEQYQ 1755
GP++VHCSAG+GRTG FIVID + QY+
Sbjct: 453 GPVVVHCSAGIGRTGTFIVIDILIDIIREKGVDCDIDVPKTIQMVRSQRSGMVQTEAQYR 512
Query: 1756 FCYHAALEYLGSF 1768
Y A Y+ +
Sbjct: 513 SIYMAVQHYIETL 525
Score = 51.4 bits (123), Expect = 2e-06
Identities = 9/55 (16%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 1587 GQDGPITVHCSAG---VGRTGVFITLSIVLERMQYEGVIDLFQTVRILRTQRPAM 1638
+ + + C VG F +L+ ++E + +++ TV L+
Sbjct: 165 SKVTHVMIRCQELKYDVGGGERFDSLTDLVEHYKKNPMVETLGTVLQLKQPLNTT 219
Score = 47.9 bits (114), Expect = 2e-05
Identities = 20/125 (16%), Positives = 34/125 (27%), Gaps = 39/125 (31%)
Query: 1631 LRTQRPAMVQTEHLYTSSPFSEQLALDMREVPPGPPLKRPDPNIPGDVPPVHVIVEHNSP 1690
L P + H + S +E+L + + G L R + PGD
Sbjct: 102 LNCADPTSERWFHGHLSGKEAEKLLTE--KGKHGSFLVRESQSHPGDF------------ 147
Query: 1691 GLLWIIGPIIAALALSICLVLLFIL--KSSLESSGVNLPVGPLIVHCSAG---VGRTGCF 1745
+L + ES+ V +++ C VG F
Sbjct: 148 --------------------VLSVRTGDDKGESNDGKSKVTHVMIRCQELKYDVGGGERF 187
Query: 1746 IVIDA 1750
+
Sbjct: 188 DSLTD 192
Score = 45.6 bits (108), Expect = 1e-04
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 561 TPVRGDGFIDFIGQVHKTKEQFGQDGPITVHCS 593
P G +DF+ +VH +E GP+ VHCS
Sbjct: 428 VPSDPGGVLDFLEEVHHKQESIMDAGPVVVHCS 460
>1lyv_A Protein-tyrosine phosphatase YOPH; toxin, hydrolase; 1.36A
{Yersinia enterocolitica} SCOP: c.45.1.2 PDB: 1qz0_A*
1ytn_A 1ytw_A 2i42_A 2y2f_A* 2ydu_A* 1xxp_A* 3blu_A*
1ypt_A* 3blt_A* 1xxv_A* 3f9b_A 3f9a_A 3f99_A 3bm8_A*
1pa9_A* 1yts_A
Length = 306
Score = 359 bits (922), Expect = e-113
Identities = 52/290 (17%), Positives = 94/290 (32%), Gaps = 26/290 (8%)
Query: 206 HIENLKANDNLKFSQEYESIE---PGQQFTWDHSSMEMNKAKNRYANVIAYDHSRVILST 262
+ + S ++ + + NR+ ++ + V
Sbjct: 23 TVSPYGPEARAELSSRLTTLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVRA-- 80
Query: 263 VDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEERT 322
+NANY + +A Q PLQ L +RM+ E R+ + ++ E
Sbjct: 81 --------DLNANYIQVG--NTRTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIA 130
Query: 323 RIKCDQYWPSRGTETYGHITVTLQDVQELASYCIRTF----MINKGADSERREIKQLQFT 378
+ R + TYG ITV + Q++ + + A + + +
Sbjct: 131 NQRFGMPDYFRQSGTYGSITVESKMTQQVGLGDGIMADMYTLTIREAGQKTISVPVVHVG 190
Query: 379 AWPDHGVP--EHPAPFLLFLRRVRAMNPGTNSLESSGVNLP--VGPLIVHCSAGVGRTGC 434
WPD E + + + S ++H AGVGRT
Sbjct: 191 NWPDQTAVSSEVTKALASLVDQTAETKRNMYESKGSSAVADDSKLRPVIHSRAGVGRTAQ 250
Query: 435 FIVIDAMIERIKHDKTVDIYGHVTCLRAQRN-YMVQTEDQYMFIHDALLE 483
I AM + + + V+ +R QRN MVQ ++Q +
Sbjct: 251 L--IGAMCMNDSRNSQLSVEDMVSQMRVQRNGIMVQKDEQLDVLIKLAEG 298
Score = 352 bits (906), Expect = e-110
Identities = 51/272 (18%), Positives = 90/272 (33%), Gaps = 23/272 (8%)
Query: 732 QTESIEPGQQFTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGY 791
+ + + NR+ ++ + V +NANY
Sbjct: 41 TLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVRA----------DLNANYIQVG 90
Query: 792 RKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGH 851
+ +A Q PLQ L +RM+ E R+ + ++ E + R + TYG
Sbjct: 91 --NTRTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDYFRQSGTYGS 148
Query: 852 ITVTLQDVQELASYCIRTF----MINKGADSERREIKQLQFTAWPDHGVP--EHPAPFLL 905
ITV + Q++ + + A + + + WPD E
Sbjct: 149 ITVESKMTQQVGLGDGIMADMYTLTIREAGQKTISVPVVHVGNWPDQTAVSSEVTKALAS 208
Query: 906 FLRRVRAMNPGTNSLESSGVNLP--VGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVD 963
+ + + S ++H AGVGRT I AM + +
Sbjct: 209 LVDQTAETKRNMYESKGSSAVADDSKLRPVIHSRAGVGRTAQL--IGAMCMNDSRNSQLS 266
Query: 964 IYGHVTCLRAQRN-YMVQTEDQYMFIHDALLE 994
+ V+ +R QRN MVQ ++Q +
Sbjct: 267 VEDMVSQMRVQRNGIMVQKDEQLDVLIKLAEG 298
Score = 169 bits (430), Expect = 1e-46
Identities = 29/217 (13%), Positives = 58/217 (26%), Gaps = 60/217 (27%)
Query: 1298 EFKKL-SNIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFI 1356
L + + + + NR I + V +NA++I
Sbjct: 38 RLTTLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVRA----------DLNANYI 87
Query: 1357 DGYRLRSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGR-------------- 1402
+ IA Q PL E +RML E+ + ++ +L E+
Sbjct: 88 QVGN--TRTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDYFRQSGT 145
Query: 1403 -------------------YVLREFKVTD-ARDATSRTLRQFQLIDWPEQGVPKSGD--G 1440
+ + +T + ++ + +WP+Q S
Sbjct: 146 YGSITVESKMTQQVGLGDGIMADMYTLTIREAGQKTISVPVVHVGNWPDQTAVSSEVTKA 205
Query: 1441 FIDFIGQVHKTKEQFGQD-----------GPITVHCS 1466
+ Q +TK + +H
Sbjct: 206 LASLVDQTAETKRNMYESKGSSAVADDSKLRPVIHSR 242
Score = 137 bits (348), Expect = 1e-35
Identities = 29/156 (18%), Positives = 52/156 (33%), Gaps = 22/156 (14%)
Query: 1505 KCHQYWPSERSIRYEWFVVEPIA--EYNMPQYVLREFKVTDARDAT--SRTLRQFQLIDW 1560
Y+ +S Y VE + + ++ + R+A + ++ + +W
Sbjct: 135 GMPDYFR--QSGTYGSITVESKMTQQVGLGDGIMADMYTLTIREAGQKTISVPVVHVGNW 192
Query: 1561 PEQGVPKSGD--GFIDFIGQVHKTKEQFGQD-----------GPITVHCSAGVGRTGVFI 1607
P+Q S + Q +TK + +H AGVGRT I
Sbjct: 193 PDQTAVSSEVTKALASLVDQTAETKRNMYESKGSSAVADDSKLRPVIHSRAGVGRTAQLI 252
Query: 1608 TLSIVLERMQYEGVIDLFQTVRILRTQRPA-MVQTE 1642
+ + + V +R QR MVQ +
Sbjct: 253 G--AMCMNDSRNSQLSVEDMVSQMRVQRNGIMVQKD 286
Score = 101 bits (253), Expect = 3e-23
Identities = 35/278 (12%), Positives = 66/278 (23%), Gaps = 75/278 (26%)
Query: 511 DTSTGMELEFKKL-SNIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCL------TPV 563
+ + L + + + + NR I + V V
Sbjct: 30 EARAELSSRLTTLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVRADLNANYIQV 89
Query: 564 RGDGFI-----------DF---IGQVH--------------KTK-------EQFGQDGPI 588
I + + + Q G G I
Sbjct: 90 GNTRTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDYFRQSGTYGSI 149
Query: 589 TVHCSRLAQHIENLKANDNLKFSQEYESIEPGQ---------QFT-W-DHSSMEMNKAKN 637
TV + + + D + +I W D +
Sbjct: 150 TVES----KMTQQVGLGDGIMADMYTLTIREAGQKTISVPVVHVGNWPDQT--------- 196
Query: 638 RYANVIAYDHSRVILSTVDGIPGRDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGV 697
++ + ++ + S VD + + + +H AGVGRT
Sbjct: 197 ----AVSSEVTKALASLVDQT--AETKRNMYESKGSSAVADDSKLRPVIHSRAGVGRTAQ 250
Query: 698 FITLSIVLERMQYEGVIDLFQTVRILRTQRPA-MVQTE 734
I + + + V +R QR MVQ +
Sbjct: 251 LIG--AMCMNDSRNSQLSVEDMVSQMRVQRNGIMVQKD 286
Score = 64.8 bits (158), Expect = 5e-11
Identities = 13/81 (16%), Positives = 19/81 (23%), Gaps = 29/81 (35%)
Query: 1714 ILKSSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDA----------------------- 1750
+ +S S+ + ++H AGVGRT I
Sbjct: 220 MYESKGSSAVADDSKLRPVIHSRAGVGRTAQLIGAMCMNDSRNSQLSVEDMVSQMRVQRN 279
Query: 1751 ------KEQYQFCYHAALEYL 1765
EQ A
Sbjct: 280 GIMVQKDEQLDVLIKLAEGQG 300
Score = 61.7 bits (150), Expect = 5e-10
Identities = 6/75 (8%), Positives = 18/75 (24%), Gaps = 9/75 (12%)
Query: 598 HIENLKANDNLKFSQEYESIE---PGQQFTWDHSSMEMNKAKNRYANVIAYDHSRVIL-- 652
+ + S ++ + + NR+ ++ + V
Sbjct: 23 TVSPYGPEARAELSSRLTTLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVRADL 82
Query: 653 --STVDGIPGRDGFI 665
+ + G I
Sbjct: 83 NANYIQV--GNTRTI 95
Score = 38.6 bits (90), Expect = 0.014
Identities = 5/51 (9%), Positives = 12/51 (23%), Gaps = 1/51 (1%)
Query: 1241 DTSTGMELEFKKL-SNIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCL 1290
+ + L + + + + NR I + V
Sbjct: 30 EARAELSSRLTTLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVRA 80
>1g4w_R Protein tyrosine phosphatase SPTP; virulence factor, GTPase
activating protein, 4-helix bundle, disorder, signaling
protein; 2.20A {Salmonella typhimurium} SCOP: a.24.11.1
c.45.1.2 PDB: 1g4u_S
Length = 383
Score = 358 bits (921), Expect = e-111
Identities = 57/307 (18%), Positives = 107/307 (34%), Gaps = 23/307 (7%)
Query: 189 TPGMVSHPPIPISRLAQHIENLKANDNLKFSQEYESIEPGQQFTWDHSSMEMNKAKNRYA 248
+ +++ + I + A + + E E IE G S + A+ +
Sbjct: 95 ERWVDKASTHELTQAVKKIHVI-AKELKNVTAELEKIEAGAPMPQTMSGPTLGLARFAVS 153
Query: 249 NVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGP--LQETLGDFWRMVWE 306
++ ++V LS +N DG +A P + L +M+ E
Sbjct: 154 SIPINQQTQVKLSD----GMPVPVNTLTFDGK---PVALAGSYPKNTPDALEAHMKMLLE 206
Query: 307 LRSVTIVMMTKLEERTRIKCDQYWPS-RGTETYGHITVTLQDVQELASY-CIRTFMINKG 364
+V++T ++ ++ Q P RG+ T+G + Q V + I + +
Sbjct: 207 KECSCLVVLTSEDQ---MQAKQLPPYFRGSYTFGEVHTNSQKVSSASQGEAIDQYNMQLS 263
Query: 365 ADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVH 424
+R I L WPDH RV+ N SS ++H
Sbjct: 264 CGEKRYTIPVLHVKNWPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDK---HLPMIH 320
Query: 425 CSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRN-YMVQTEDQYMFIHDALLE 483
C GVGRTG + K + ++ R RN M++ Q++ + +
Sbjct: 321 CLGGVGRTGTMAAALVL----KDNPHSNLEQVRADFRDSRNNRMLEDASQFVQLKAMQAQ 376
Query: 484 AVLCGNT 490
++ +
Sbjct: 377 LLMTTAS 383
Score = 343 bits (880), Expect = e-106
Identities = 54/275 (19%), Positives = 97/275 (35%), Gaps = 22/275 (8%)
Query: 732 QTESIEPGQQFTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGY 791
+ E IE G S + A+ +++ ++V LS +N DG
Sbjct: 126 ELEKIEAGAPMPQTMSGPTLGLARFAVSSIPINQQTQVKLSD----GMPVPVNTLTFDGK 181
Query: 792 RKHNAYVATQGP--LQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYWPS-RGTET 848
+A P + L +M+ E +V++T ++ ++ Q P RG+ T
Sbjct: 182 ---PVALAGSYPKNTPDALEAHMKMLLEKECSCLVVLTSEDQ---MQAKQLPPYFRGSYT 235
Query: 849 YGHITVTLQDVQELASY-CIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFL 907
+G + Q V + I + + +R I L WPDH
Sbjct: 236 FGEVHTNSQKVSSASQGEAIDQYNMQLSCGEKRYTIPVLHVKNWPDHQPLPSTDQLEYLA 295
Query: 908 RRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGH 967
RV+ N SS ++HC GVGRTG + K + ++
Sbjct: 296 DRVKNSNQNGAPGRSSSDK---HLPMIHCLGGVGRTGTMAAALVL----KDNPHSNLEQV 348
Query: 968 VTCLRAQRN-YMVQTEDQYMFIHDALLEAVLCGNT 1001
R RN M++ Q++ + + ++ +
Sbjct: 349 RADFRDSRNNRMLEDASQFVQLKAMQAQLLMTTAS 383
Score = 159 bits (403), Expect = 3e-42
Identities = 32/234 (13%), Positives = 63/234 (26%), Gaps = 50/234 (21%)
Query: 1276 RLVHILPVESSRVCLTPVRGKT-EFKKLS----NIRA-EPSRFISASLPCNKHKNRLVHI 1329
R V + + E K ++ I A P + + + I
Sbjct: 96 RWVDKASTHELTQAVKKIHVIAKELKNVTAELEKIEAGAPMPQTMSGPTLGLARFAVSSI 155
Query: 1330 LPVESSRVCLTPVRGIEGSDYINASFIDGYRLRSAYIATQGP--LADTTEDFWRMLWEHN 1387
+ ++V L+ +N DG +A P D E +ML E
Sbjct: 156 PINQQTQVKLSD----GMPVPVNTLTFDGKP---VALAGSYPKNTPDALEAHMKMLLEKE 208
Query: 1388 STIVVMLTKLKEMGR-----------------------------YVLREFKVTDARDATS 1418
+ +V+LT +M + ++ + +
Sbjct: 209 CSCLVVLTSEDQMQAKQLPPYFRGSYTFGEVHTNSQKVSSASQGEAIDQYNMQLSCGEKR 268
Query: 1419 RTLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQD------GPITVHCS 1466
T+ + +WP+ S D +V + + +HC
Sbjct: 269 YTIPVLHVKNWPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCL 322
Score = 146 bits (370), Expect = 6e-38
Identities = 24/148 (16%), Positives = 46/148 (31%), Gaps = 13/148 (8%)
Query: 1504 EKCHQYWPSER-SIRYEWFVVEPIAEYNMPQY-VLREFKVTDARDATSRTLRQFQLIDWP 1561
+ Q P R S + + Q + ++ + + T+ + +WP
Sbjct: 221 MQAKQLPPYFRGSYTFGEVHTNSQKVSSASQGEAIDQYNMQLSCGEKRYTIPVLHVKNWP 280
Query: 1562 EQGVPKSGDGFIDFIGQVHKTKEQFGQD------GPITVHCSAGVGRTGVFITLSIVLER 1615
+ S D +V + + +HC GVGRTG +
Sbjct: 281 DHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALV---- 336
Query: 1616 MQYEGVIDLFQTVRILRTQR-PAMVQTE 1642
++ +L Q R R M++
Sbjct: 337 LKDNPHSNLEQVRADFRDSRNNRMLEDA 364
Score = 94.2 bits (234), Expect = 3e-20
Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 11/81 (13%)
Query: 662 DGFIDFIGQVHKTKEQFGQD------GPITVHCSAGVGRTGVFITLSIVLERMQYEGVID 715
D +V + + +HC GVGRTG + ++ +
Sbjct: 289 DQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALV----LKDNPHSN 344
Query: 716 LFQTVRILRTQR-PAMVQTES 735
L Q R R M++ S
Sbjct: 345 LEQVRADFRDSRNNRMLEDAS 365
Score = 71.5 bits (175), Expect = 7e-13
Identities = 10/64 (15%), Positives = 14/64 (21%), Gaps = 27/64 (42%)
Query: 1729 GPLIVHCSAGVGRTGCFIVIDA---------------------------KEQYQFCYHAA 1761
++HC GVGRTG Q+
Sbjct: 315 HLPMIHCLGGVGRTGTMAAALVLKDNPHSNLEQVRADFRDSRNNRMLEDASQFVQLKAMQ 374
Query: 1762 LEYL 1765
+ L
Sbjct: 375 AQLL 378
Score = 58.0 bits (140), Expect = 1e-08
Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 9/82 (10%)
Query: 593 SRLAQHIENLK--ANDNLKFSQEYESIEPGQQFTWDHSSMEMNKAKNRYANVIAYDHSRV 650
L Q ++ + A + + E E IE G S + A+ +++ ++V
Sbjct: 104 HELTQAVKKIHVIAKELKNVTAELEKIEAGAPMPQTMSGPTLGLARFAVSSIPINQQTQV 163
Query: 651 ILSTVDGIP-------GRDGFI 665
LS +P G+ +
Sbjct: 164 KLSDGMPVPVNTLTFDGKPVAL 185
Score = 37.2 bits (86), Expect = 0.050
Identities = 11/127 (8%), Positives = 30/127 (23%), Gaps = 12/127 (9%)
Query: 440 AMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLEAVLCGNTEIPARSLHV 499
+ + + + ++ L + I + G
Sbjct: 47 PLRSLMTNLQNLNKIPEAKQLNDYVTTLTN-------IQVGVARFSQWGTCGGEVERWVD 99
Query: 500 HIQKLMSMEVGDTSTGMELEFKKLS----NIRA-EPSRFISASLPCNKHKNRLVHILPVE 554
+ + E K ++ I A P + + + I +
Sbjct: 100 KASTHELTQAVKKIHVIAKELKNVTAELEKIEAGAPMPQTMSGPTLGLARFAVSSIPINQ 159
Query: 555 SSRVCLT 561
++V L+
Sbjct: 160 QTQVKLS 166
Score = 32.6 bits (74), Expect = 1.2
Identities = 4/39 (10%), Positives = 8/39 (20%), Gaps = 6/39 (15%)
Query: 561 TPVRGDGFIDFIGQVHKTKEQFGQD------GPITVHCS 593
D +V + + +HC
Sbjct: 284 PLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCL 322
>2i6j_A Ssoptp, sulfolobus solfataricus protein tyrosine phosphatase; PTP
domain, hydrolase; 1.66A {Sulfolobus solfataricus} PDB:
2i6i_A 2i6m_A 3ro1_A* 2i6o_A* 2dxp_A* 2i6p_A*
Length = 161
Score = 81.1 bits (200), Expect = 1e-17
Identities = 26/137 (18%), Positives = 50/137 (36%), Gaps = 24/137 (17%)
Query: 343 VTLQDVQELASYCIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAM 402
+ L + E+ + ++ ++ L PD GVP FL ++ + +
Sbjct: 33 LVLPEDWEIEESWGD--KDYYLSILKKNGLQPLHI-PIPDGGVPSDSQ-FLTIMKWLLSE 88
Query: 403 NPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRA 462
+VHC G+GRTG + ++ +++ + +R
Sbjct: 89 K---------------EGNLVHCVGGIGRTGTILASYLILTE-----GLEVESAIDEVRL 128
Query: 463 QRNYMVQTEDQYMFIHD 479
R VQT +Q MF+
Sbjct: 129 VRPGAVQTYEQEMFLLR 145
Score = 81.1 bits (200), Expect = 1e-17
Identities = 26/137 (18%), Positives = 50/137 (36%), Gaps = 24/137 (17%)
Query: 854 VTLQDVQELASYCIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAM 913
+ L + E+ + ++ ++ L PD GVP FL ++ + +
Sbjct: 33 LVLPEDWEIEESWGD--KDYYLSILKKNGLQPLHI-PIPDGGVPSDSQ-FLTIMKWLLSE 88
Query: 914 NPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRA 973
+VHC G+GRTG + ++ +++ + +R
Sbjct: 89 K---------------EGNLVHCVGGIGRTGTILASYLILTE-----GLEVESAIDEVRL 128
Query: 974 QRNYMVQTEDQYMFIHD 990
R VQT +Q MF+
Sbjct: 129 VRPGAVQTYEQEMFLLR 145
Score = 69.1 bits (169), Expect = 2e-13
Identities = 23/100 (23%), Positives = 38/100 (38%), Gaps = 13/100 (13%)
Query: 1543 DARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGR 1602
L+ + P+ GVP S F+ + K + VHC G+GR
Sbjct: 51 YLSILKKNGLQPLHIP-IPDGGVP-SDSQFLTIM------KWLLSEKEGNLVHCVGGIGR 102
Query: 1603 TGVFITLSIVLERMQYEGVIDLFQTVRILRTQRPAMVQTE 1642
TG + ++L +++ + +R RP VQT
Sbjct: 103 TGTILASYLILTEG-----LEVESAIDEVRLVRPGAVQTY 137
Score = 66.8 bits (163), Expect = 9e-13
Identities = 26/112 (23%), Positives = 44/112 (39%), Gaps = 19/112 (16%)
Query: 652 LSTVD-GIPGRDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQY 710
+ D G+P F+ + K + VHC G+GRTG + ++L
Sbjct: 65 IPIPDGGVPSDSQFLTIM------KWLLSEKEGNLVHCVGGIGRTGTILASYLILTEG-- 116
Query: 711 EGVIDLFQTVRILRTQRPAMVQTESIEPGQQFTWDHS--SMEMNKAKNRYAN 760
+++ + +R RP VQT +Q + M + KN Y+N
Sbjct: 117 ---LEVESAIDEVRLVRPGAVQTY-----EQEMFLLRVEGMRKSWLKNIYSN 160
Score = 43.3 bits (102), Expect = 1e-04
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 1729 GPLIVHCSAGVGRTGCFIVIDAKEQYQFCYHAALEYL 1765
+VHC G+GRTG + +A++ +
Sbjct: 90 EGNLVHCVGGIGRTGTILASYLILTEGLEVESAIDEV 126
Score = 40.2 bits (94), Expect = 0.001
Identities = 17/92 (18%), Positives = 29/92 (31%), Gaps = 10/92 (10%)
Query: 1375 TTEDFWRMLWEHNSTIVVMLTKLKEMGRYVLREFKVTDARDATSRTLRQFQLIDWPEQGV 1434
TE+ + V++L + E+ K L+ + P+ GV
Sbjct: 16 YTENEILEWRKEGVKRVLVLPEDWEIEESWGD--KDYYLSILKKNGLQPLHIP-IPDGGV 72
Query: 1435 PKSGDGFIDFIGQVHKTKEQFGQDGPITVHCS 1466
P S F+ + K + VHC
Sbjct: 73 P-SDSQFLTIM------KWLLSEKEGNLVHCV 97
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 80.5 bits (198), Expect = 5e-15
Identities = 98/645 (15%), Positives = 188/645 (29%), Gaps = 198/645 (30%)
Query: 1175 EYGPISHYYLIVVPEDKMTYDKQ-PDQFL------TDEMITRKDDPTVSLQDPYIAAKSL 1227
+G + H L VP Q +QF T+ DD + + + K L
Sbjct: 12 SHGSLEHVLL--VPTASFFIASQLQEQFNKILPEPTEGFA--ADDEPTTPAE--LVGKFL 65
Query: 1228 HVHIQKLMSMEVGDTSTGMELEFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSR 1287
++ S V + G + L E + ++ + + +H L +
Sbjct: 66 G-YV----SSLVEPSKVGQFDQVLNLCLTEFE-NCYL-------EGND--IHALAAK--- 107
Query: 1288 VCLTPVRGKTEFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLTPVRGIEG 1347
L T K I+ +I+A + + P
Sbjct: 108 --LLQENDTTLVKTKELIKN----YITARIMAKR-------------------PFDKKSN 142
Query: 1348 SDYINASFIDGYRLRSAYIAT----QGPLADTTEDFW---RMLWEHNSTIVVMLTKLKEM 1400
S A +G +A + QG T+D++ R L++ +V L +K
Sbjct: 143 SALFRAV-GEG----NAQLVAIFGGQG----NTDDYFEELRDLYQTYHVLVGDL--IKFS 191
Query: 1401 GRYVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFID-------FIGQVHKTKE 1453
L E + DA + +++W E ++ IG +
Sbjct: 192 AE-TLSEL-IRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVI----- 244
Query: 1454 QFGQDGPITVHCSLLSLH----INLTQSEWGREKPV--AQL--------SFCSVLIAYL- 1498
Q V LL + + G + + A SF + +
Sbjct: 245 QLAH---YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAIT 301
Query: 1499 VLFSQ-EKCHQYWPSERSIRYEWFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQL 1557
VLF +C++ +P+ ++P +L + + + S L
Sbjct: 302 VLFFIGVRCYEAYPN----------------TSLPPSILEDS-LENNEGVPSPMLS---- 340
Query: 1558 IDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGV--GRTGVFIT------- 1608
I + + QV + P + G + ++
Sbjct: 341 I----SNLTQE---------QVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLY 387
Query: 1609 -LSIVLERMQYEGVIDLFQTVRILRTQRPAMVQTEHLYTSSPF--------SEQLALDMR 1659
L++ L + + +D Q+ RI ++R L +SPF S+ + D+
Sbjct: 388 GLNLTLRKAKAPSGLD--QS-RIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLV 444
Query: 1660 EVP---PGPPLKRP-------------DPNIPGDVPPVHVIVEHNSPGLLWIIGPIIAAL 1703
+ ++ P +I + V I+ P + W
Sbjct: 445 KNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERI--VDCIIRL--P-VKW-----ETTT 494
Query: 1704 ALSICLVLLFILKSSLESSGVNLPVGPLIVHCSAGVGRTGCFIVI 1748
+L F +SG +G L G TG +++
Sbjct: 495 QFKATHILDF---GPGGASG----LGVLTHRNKDG---TGVRVIV 529
Score = 62.8 bits (152), Expect = 1e-09
Identities = 98/668 (14%), Positives = 178/668 (26%), Gaps = 259/668 (38%)
Query: 43 RTLFLEPTETECTISELSPFTTYSVNISLR---AHDVSTHSMTLSW----SPPIKLNPVK 95
R L L E + L P ++ + L+ + + + + P +L K
Sbjct: 7 RPLTLSHGSLEHVL--LVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAEL-VGK 63
Query: 96 YKISLDAVKEFVDSQGITQTQIVPRRTL------FLEPTETECTISELSPFTT------- 142
+ L V V+ + Q V L +LE + ++L
Sbjct: 64 F---LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTK 120
Query: 143 ------YSVNIRRRQPRKYPESSAVTRPLMSGE--IMT-------SHAPSDPVEMRRLNF 187
+ I ++P +SA+ R + G ++ + + E+R L +
Sbjct: 121 ELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE--ELRDL-Y 177
Query: 188 QTPGMVSHPPIP---ISRLAQHIENLKANDNLKFSQEYESIEPGQQF-TWDHSSMEMNKA 243
QT + I A+ + L L + + G W
Sbjct: 178 QTY-----HVLVGDLIKFSAETLSEL-IRTTLDAEKVFTQ---GLNILEW---------- 218
Query: 244 KNRYANVIAYDHSRVILSTVDGIPGSDYIN--------------ANYCD-----GYRKHN 284
L P DY+ A+Y G+
Sbjct: 219 ----------------LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGE 262
Query: 285 AYVATQGPLQETLGDFWRMV----------WE-LRSVTIVMMTKLEERTRIKCDQYWP-S 332
+G G +V WE +T L ++
Sbjct: 263 LRSYLKG----ATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL----------FFIGV 308
Query: 333 RGTETYGHITVTLQDVQELASYCIR------TFMIN-KGADSERREIKQLQFTAWPDHGV 385
R E Y + ++ +++ + + M++ E Q+Q
Sbjct: 309 RCYEAYPNTSLPPSILED----SLENNEGVPSPMLSISNLTQE-----QVQ--------- 350
Query: 386 PEHPAPFLLFLRRVRAMN---PGTNSLESSGVNLP---V--GP---LI--------VHCS 426
V N P +E S VN V GP L
Sbjct: 351 -----------DYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAP 399
Query: 427 AGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFI----HDALL 482
+G+ ++ RI +R +++ + H LL
Sbjct: 400 SGLDQS-----------RIPFS--------------ERKLKFSN--RFLPVASPFHSHLL 432
Query: 483 --------EAVLCGNTEIPARSLHVHIQKLMSMEVGDTSTGMELEFKKLSNIRAEPSRFI 534
+ ++ N A+ + + V DT G S++R I
Sbjct: 433 VPASDLINKDLVKNNVSFNAKDIQIP--------VYDTFDG--------SDLRVLSGS-I 475
Query: 535 SASL-------PCN---KHKNRLVHIL---PVESSRV-CLTP--VRGDGFIDFI--GQVH 576
S + P + + HIL P +S + LT G G + I G +
Sbjct: 476 SERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTG-VRVIVAGTLD 534
Query: 577 K-TKEQFG 583
+ +G
Sbjct: 535 INPDDDYG 542
Score = 49.7 bits (118), Expect = 1e-05
Identities = 89/654 (13%), Positives = 174/654 (26%), Gaps = 242/654 (37%)
Query: 535 SASL-PCNKHKNRLVHILPVESSRVCLTPVRGDGFIDFIGQVHKTKEQFGQDGPITV--- 590
+ S P L H+L V ++ + + F + + T+ D P T
Sbjct: 3 AYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEP--TEGFAADDEPTTPAEL 60
Query: 591 ------HCSRLAQHIENLKANDNLKFS-QEYESIEPGQQFTWD---HS-----SMEMNKA 635
+ S L + + + + L E+E+ + H+ E +
Sbjct: 61 VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFEN-----CYLEGNDIHALAAKLLQENDTT 115
Query: 636 KNRYANVI-AYDHSRVILSTVDGIPGRDGFIDFI--GQVHKTKEQFGQDGPITVHCSAGV 692
+ +I Y +R++ + G + FG G
Sbjct: 116 LVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNA-QLVAIFG-----------GQ 163
Query: 693 GRTGVFITLSIVLERMQ-----YEGVI-DLFQTVRILRTQRPAMVQTESIEPGQQFTWDH 746
G T + E ++ Y ++ DL + +
Sbjct: 164 GNTDDY------FEELRDLYQTYHVLVGDLIKFSA-------ETLSELI----------R 200
Query: 747 SSMEMNKAKNRYANVIAYDHSRVILSTVDGIPGSDYIN--------------ANYCD--- 789
++++ K + N++ + L P DY+ A+Y
Sbjct: 201 TTLDAEKVFTQGLNILEW------LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAK 254
Query: 790 --GYRKHNAYVATQGPLQETLGDFWRMV----------WE-LRSVTIVMMTKLEERTRIK 836
G+ +G G +V WE +T L
Sbjct: 255 LLGFTPGELRSYLKG----ATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL------- 303
Query: 837 CDQYWP-SRGTETYGHITVTLQDVQELASYCIR------TFMIN-KGADSERREIKQLQF 888
++ R E Y + ++ +++ + + M++ E Q+Q
Sbjct: 304 ---FFIGVRCYEAYPNTSLPPSILED----SLENNEGVPSPMLSISNLTQE-----QVQ- 350
Query: 889 TAWPDHGVPEHPAPFLLFLRRVRAMN---PGTNSLESSGVNLP---V--GP---LI---- 933
V N P +E S VN V GP L
Sbjct: 351 -------------------DYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNL 391
Query: 934 ----VHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFI- 988
+G+ ++ RI +R +++ +
Sbjct: 392 TLRKAKAPSGLDQS-----------RIPFS--------------ERKLKFSN--RFLPVA 424
Query: 989 ---HDALLEAVLCGNTEIPASSQMITRKDDPTVSLQDPYIAAKFSQRNIPYTFHLGNG-- 1043
H LL PAS + L ++ IP + +G
Sbjct: 425 SPFHSHLLV---------PASDLINKD-------LVKNNVSFNAKDIQIP-VYDTFDGSD 467
Query: 1044 -QTYEGFVNKKLVRGLKYRIFVRAIVDTPQKHLYTSSPFSEQLALDMREVPPGP 1096
+ G +++++V + +R V T++ F LD GP
Sbjct: 468 LRVLSGSISERIVDCI-----IRLPVKWE-----TTTQFKATHILDF-----GP 506
Score = 46.6 bits (110), Expect = 8e-05
Identities = 62/346 (17%), Positives = 106/346 (30%), Gaps = 95/346 (27%)
Query: 33 GITQTQ--IVPRRTLFLEPTETECTISELSPFTTYSVNISLRAHDVSTHSMTLSWSPPIK 90
G+ Q +V + L P E S L T +S + + A ++ T SW
Sbjct: 242 GVIQLAHYVVTAKLLGFTPGEL---RSYLKGATGHSQGL-VTAVAIA---ETDSW----- 289
Query: 91 LNPVKYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPTETECTISELSPFTTY--SV-NI 147
+ A+ + G+ + P +L E +E P + S+ N+
Sbjct: 290 --ESFFVSVRKAI-TVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVP--SPMLSISNL 344
Query: 148 RRRQPRKY--------PESSAVTRPLMSGEIMTSHAPSDPVEMRRLNFQTPGMVSHPPIP 199
+ Q + Y P V L++G + N +VS PP
Sbjct: 345 TQEQVQDYVNKTNSHLPAGKQVEISLVNG--------------AK-NL----VVSGPPQS 385
Query: 200 ISRLAQHIENLKANDNL-----KFSQEYESI--------EPGQQFTWDHSSMEMNKAKNR 246
+ L + KA L FS+ P F HS + + A +
Sbjct: 386 LYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASP---F---HSHL-LVPASDL 438
Query: 247 -----YANVIAYDHSRV---ILSTVDGI---PGSDYINANYCDGYRKHNAY--VATQ--- 290
N ++++ + + T DG S I+ D + TQ
Sbjct: 439 INKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKA 498
Query: 291 ------GPLQET-LGDFWRMVWELRSVTIVMMTKLEERTRIKCDQY 329
GP + LG + V +++ L+ D Y
Sbjct: 499 THILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPD---DDY 541
Score = 36.6 bits (84), Expect = 0.100
Identities = 38/254 (14%), Positives = 70/254 (27%), Gaps = 78/254 (30%)
Query: 1540 KVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQV-HKTKEQFGQDGPITVHCSA 1598
V + D + F ++D P + I F G+ + +E + I
Sbjct: 1644 DVWNRADNHFKDTYGFSILDIVINN-PVNLT--IHFGGEKGKRIRENY--SAMIFETIVD 1698
Query: 1599 GVGRT-GVFITLSIVLERMQYEGVID-LFQTVRILRTQRPAMVQTE-------------- 1642
G +T +F ++ + L T TQ PA+ E
Sbjct: 1699 GKLKTEKIFKEINEHSTSYTFRSEKGLLSATQF---TQ-PALTLMEKAAFEDLKSKGLIP 1754
Query: 1643 -------H-L--YT-------SSPFSEQLAL------DMREVPPGPPLKRPDPNI----P 1675
H L Y + + M+ P L R + + P
Sbjct: 1755 ADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINP 1814
Query: 1676 GDVPP------VHVIVE--------------HNSPGLLWIIGPIIAAL-ALSICLVLLFI 1714
G V + +VE +N ++ + AL ++ L + +
Sbjct: 1815 GRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKL 1874
Query: 1715 LKSSLESSGVNLPV 1728
K + + L
Sbjct: 1875 QKIDI----IELQK 1884
Score = 36.6 bits (84), Expect = 0.10
Identities = 45/258 (17%), Positives = 69/258 (26%), Gaps = 105/258 (40%)
Query: 24 AVKEFVDSQGITQTQIV---PRRTLFLEPTETECTISELSPFTTYSVNISLRAH------ 74
A F D+ G + IV P E I E + + +
Sbjct: 1649 ADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFK 1708
Query: 75 DVSTHSMTLSWSPPIKLNPVKYKISLDAVKEFVDSQGITQ-TQIVPRRTLFLEPTETECT 133
+++ HS + ++ L L A TQ TQ P L L E
Sbjct: 1709 EINEHSTSYTFRSEKGL--------LSA----------TQFTQ--PA--LTL----MEKA 1742
Query: 134 ISELSPFTTYSVNIRRRQPRKYP---------ESSAVTRPL------MS----------- 167
E ++ + E +A L MS
Sbjct: 1743 AFED---------LKSKGLIPADATFAGHSLGEYAA----LASLADVMSIESLVEVVFYR 1789
Query: 168 GEIMTSHAPSDPVEMRRLNFQTPGMVSHPPIPISR------LAQHIENLK---------A 212
G M P D E+ R N+ GM++ P ++ L +E +
Sbjct: 1790 GMTMQVAVPRD--ELGRSNY---GMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIV 1844
Query: 213 NDNLKFSQEYESIEPGQQ 230
N N+ QQ
Sbjct: 1845 NYNV----------ENQQ 1852
Score = 35.4 bits (81), Expect = 0.23
Identities = 40/239 (16%), Positives = 65/239 (27%), Gaps = 105/239 (43%)
Query: 442 IERIKHDKTVDIYGHVTCLRAQR---NYMVQTED---------------------QYMFI 477
I I + V++ H + +R NY + Y F
Sbjct: 1661 ILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFR 1720
Query: 478 HDA-LLEAVLCGNTEI--PARSLHVHIQKLMSMEVGDTSTGMELEFKKLSN--IRAEPSR 532
+ LL A T+ PA L ME F+ L + + +
Sbjct: 1721 SEKGLLSA-----TQFTQPA---------LTLMEK--------AAFEDLKSKGLIPADAT 1758
Query: 533 F-------ISASLPCNKHKNRLVH---ILPVESSRVCLTPVRG-----------DGFIDF 571
F +A L ++ +ES V + RG G ++
Sbjct: 1759 FAGHSLGEYAA----------LASLADVMSIESL-VEVVFYRGMTMQVAVPRDELGRSNY 1807
Query: 572 ------IGQVHKTKEQFGQDGPITVHCSRLAQHIENLK--ANDNLKFSQEYESIEPGQQ 622
G+V + F Q+ V R+ + L N N+ QQ
Sbjct: 1808 GMIAINPGRVAAS---FSQEALQYV-VERVGKRTGWLVEIVNYNV----------ENQQ 1852
Score = 30.8 bits (69), Expect = 6.4
Identities = 17/111 (15%), Positives = 36/111 (32%), Gaps = 35/111 (31%)
Query: 6 YFIEGVLTIKFHLKISLDAVKEFVDSQGITQTQIVPRRTLFLEPTETECTISELSPFTTY 65
Y + + + S +A++ V+ ++ R +E
Sbjct: 1807 YGMIAINPGRVAASFSQEALQYVVE-------RVGKRTGWLVEI---------------- 1843
Query: 66 SVN---------IS--LRAHDVSTHSMTLSWSPPIKLNPVKYKISLDAVKE 105
VN + LRA D T+ + I + ++ +SL+ V+
Sbjct: 1844 -VNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEG 1893
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 71.4 bits (174), Expect = 2e-12
Identities = 114/758 (15%), Positives = 217/758 (28%), Gaps = 256/758 (33%)
Query: 235 HSSMEMNKAKNRYANVIAY---------------DHSRVILST--VDGIPGS-DYINANY 276
H E + + +Y ++++ D + ILS +D I S D ++
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 277 ------CDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQYW 330
++ + L+ + +M+ ++ R
Sbjct: 66 RLFWTLLS-KQEEMVQKFVEEVLRINYK------F--------LMSPIKTEQRQ------ 104
Query: 331 PSRGTETY-GHITVTLQDVQELASYCIRTFMINKGADSERRE-IKQLQFTAWPDHGVPEH 388
PS T Y D Q A Y + R + +L+ A
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKYNV-----------SRLQPYLKLR-QA--------- 143
Query: 389 PAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHD 448
LL LR P N +++ G G
Sbjct: 144 ----LLELR------PAKN-------------VLIDGVLGSG------------------ 162
Query: 449 KTVDIYGHVTCLRAQ--RNYMVQTE-DQYMF--------IHDALLEAVLCGNTEIPARSL 497
KT + +Y VQ + D +F + +LE + L
Sbjct: 163 KTW--------VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ---------KL 205
Query: 498 HVHIQKLMSMEVGDTSTGMELEFKKLSNIRAEPSRFISASLPCNKHKNRLVHIL-PVESS 556
I D S+ ++L + +I+AE R + + ++N L+ +L V+++
Sbjct: 206 LYQIDP-NWTSRSDHSSNIKLR---IHSIQAELRRLLKS----KPYENCLL-VLLNVQNA 256
Query: 557 RV-------CLTPV--RGDGFIDFIGQVHKTKEQFGQ-DGPITVHCSR--LAQHIENLKA 604
+ C + R DF+ T +T + L +++ + +
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCRP 315
Query: 605 NDNLKFSQEYESIEP------GQQF-----TWDHSSMEMNKAKNRYANVIAYDHSRVILS 653
D L +E + P + TWD + +V + +I S
Sbjct: 316 QD-LP--REVLTTNPRRLSIIAESIRDGLATWD-----------NWKHVNCDKLTTIIES 361
Query: 654 TVDGI-PG--RDGFIDF-IGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQ 709
+++ + P R F + F I LS++ +
Sbjct: 362 SLNVLEPAEYRKMFDRLSV---------FPPSAHIPTI------------LLSLIWFDVI 400
Query: 710 YEGVIDLFQTV--RILRTQRPAMVQTESIEPGQQFTWDHSSMEM----NKAKNRYANVIA 763
V+ + + L ++P T SI P + Y
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKE-STISI-PSIYLELKVKLENEYALHRSIVDHYNIPKT 458
Query: 764 YDHSRVILSTVDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTI 823
+D +I +D Y ++ G+ H E + F + + R +
Sbjct: 459 FDSDDLIPPYLDQ-----YF-YSHI-GH--H-LKNIEHP---ERMTLFRMVFLDFRFL-- 503
Query: 824 VMMTKLEERTRIKCDQY-WPSRGTETYGHITVTLQDVQELASYCIRTFMINKGADSERRE 882
+I+ D W + G+ I TLQ L Y + ++ + ER
Sbjct: 504 --------EQKIRHDSTAWNASGS-----ILNTLQQ---LKFY--KPYICDNDPKYERLV 545
Query: 883 IKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSL 920
L F P + + LR A+ ++
Sbjct: 546 NAILDFL--PKIEENLICSKYTDLLR--IALMAEDEAI 579
Score = 62.9 bits (152), Expect = 9e-10
Identities = 84/664 (12%), Positives = 179/664 (26%), Gaps = 169/664 (25%)
Query: 498 HVHIQKLMSMEVGDTSTGMELEFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSR 557
H H M E G+ + ++K + ++ + F+ + C ++ IL S
Sbjct: 4 HHH----MDFETGE----HQYQYKDILSVFEDA--FV-DNFDCKDVQDMPKSIL---SKE 49
Query: 558 VCLTPVRGDGFIDFIGQVHKTKEQFGQDGPITVHCSRLAQHIENLKANDNLKFSQEYESI 617
D I RL + + + KF +E +
Sbjct: 50 EI----------DHIIMSKDAVSG----------TLRLFWTLLSKQEEMVQKFVEE--VL 87
Query: 618 EPGQQFTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVDGIPGRDGFIDFIGQVHKTKEQ 677
+F E + Y R L D + + K ++
Sbjct: 88 RINYKFLMSPIKTE---QRQPSMMTRMYIEQRDRLYN-DNQVFAKYNVSRLQPYLKLRQA 143
Query: 678 FGQDGP---ITVHCSAGVGRT------------------GVF-ITLS------IVLERMQ 709
+ P + + G G+T +F + L VLE +Q
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203
Query: 710 YEGVIDLFQTVRILRTQRPAMVQTESIEPGQQFTWDHSSMEMNKAKN--------RYANV 761
L + T R + ++ +N + A
Sbjct: 204 -----KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258
Query: 762 I-AYD-HSRVILSTVD-GIPGSDYINANYCDGYRKHNAYVATQGPL--QETLGDFWRMVW 816
A++ +++L+T + +D+++A H + L E + +
Sbjct: 259 WNAFNLSCKILLTTRFKQV--TDFLSAAT----TTHISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 817 ----ELRS-------VTIVMMTKL--EERTRIKCDQYWPSRGTETYGHI---TVTLQDVQ 860
+L + ++ + + W + I ++ + +
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATW---DNWKHVNCDKLTTIIESSLNVLEPA 369
Query: 861 ELASYCIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSL 920
E R + A + + W D + + L + +
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSLI----WFD-VIKSDVMVVVNKLHKYSLVEKQPKES 424
Query: 921 ESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIK--HDKTVDIYGHVTCLRAQRNYM 978
S + ++ + +E H VD Y + +
Sbjct: 425 TIS----------IP--------SIYLELKVKLENEYALHRSIVDHYNIPKTFD-SDDLI 465
Query: 979 VQTEDQYMFIHDA--LLEAVLCGNTEIPASSQMITRKDD--PTVSLQDPYIAAKFSQRNI 1034
DQY + H L + E + V L ++ K +
Sbjct: 466 PPYLDQYFYSHIGHHLKNI---EHPE----------RMTLFRMVFLDFRFLEQKIRHDST 512
Query: 1035 PYTFH------LGNGQTYEGFVNKKLVRGLKYRIFVRAIVD---TPQKHLYTSSPFSE-- 1083
+ L + Y+ ++ KY V AI+D +++L S +++
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDN---DPKYERLVNAILDFLPKIEENLI-CSKYTDLL 568
Query: 1084 QLAL 1087
++AL
Sbjct: 569 RIAL 572
Score = 57.2 bits (137), Expect = 6e-08
Identities = 65/426 (15%), Positives = 120/426 (28%), Gaps = 108/426 (25%)
Query: 47 LEPTETECTI--SELSPFTTYSVNISLRAHDVSTHSMTLSWSPPIK-----LNPVKYKIS 99
LE + + + +S NI LR H + L S P + L V+ +
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258
Query: 100 LDA---------------VKEFVDSQGITQTQIVPRRTLFLEPTETE--------CTISE 136
+A V +F+ + T + P E + C +
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL-TPDEVKSLLLKYLDCRPQD 317
Query: 137 L-------SPF------TTYSVNIRRRQPRKYPESSAVTRPL-MSGEIMTSHAPSDPVEM 182
L +P + + K+ +T + S ++ +P E
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL------EPAEY 371
Query: 183 RRLNFQTPGM-VSHPPIPISRLA-----------QHIENLKANDNL--KFSQEYESIEPG 228
R++ F + IP L+ + N +L K +E P
Sbjct: 372 RKM-FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430
Query: 229 QQFTWDHSSMEM----NKAKNRYANVIAYDHSRVILSTVDGIPGSDYINANYCDGYRKHN 284
+ Y +D +I +D Y ++ G+ H
Sbjct: 431 IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ-----YF-YSHI-GH--H- 480
Query: 285 AYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEERTRIKCDQY-WPSRGTETYGHITV 343
E + F + + R + +I+ D W + G+ I
Sbjct: 481 LKNIEHP---ERMTLFRMVFLDFRFL----------EQKIRHDSTAWNASGS-----ILN 522
Query: 344 TLQDVQELASYCIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMN 403
TLQ L Y + ++ + ER L F P + + LR A+
Sbjct: 523 TLQQ---LKFY--KPYICDNDPKYERLVNAILDFL--PKIEENLICSKYTDLLR--IALM 573
Query: 404 PGTNSL 409
++
Sbjct: 574 AEDEAI 579
Score = 55.6 bits (133), Expect = 2e-07
Identities = 105/711 (14%), Positives = 197/711 (27%), Gaps = 243/711 (34%)
Query: 703 IVLERMQYEGVIDLFQTVRILRTQRPAMVQT---ESIEPGQQFTWDHSSMEMNKAKNRYA 759
I++ + G + LF L +++ MVQ E + +F E +
Sbjct: 54 IIMSKDAVSGTLRLFW---TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE---QRQPSM 107
Query: 760 NVIAYDHSRVILSTVDGIPGSDYINANYCDG--YRKHNAYVATQGPLQETLGDFWR--MV 815
Y + + Y D + K+N V R
Sbjct: 108 MTRMY---------------IEQRDRLYNDNQVFAKYN--V-------------SRLQPY 137
Query: 816 WELRSVTIVMMTKLEERTRIKCDQYWPSRGTETYGHI----TV----TLQDVQELASYCI 867
+LR L E P++ G + T +
Sbjct: 138 LKLR-------QALLELR--------PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182
Query: 868 RTFMINKG-ADSERREIKQLQ---------FTAWPDHG--VPEHPAPFLLFLRRVRAMNP 915
+ F +N +S ++ LQ +T+ DH + LRR+ P
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 916 GTNSLESSGVNLPVGPLI---VHCSAGVGRT---GCFIVIDAMIERIKHDKTVDIYGHVT 969
N L L+ V +A C I++ R K V
Sbjct: 243 YENCL-----------LVLLNV-QNAKAWNAFNLSCKILL---TTR---FKQV-----TD 279
Query: 970 CLRAQRNYMVQTED-QYMFIHD---ALLEAVL-CGNTEIPASSQMITRKDDP-TVSLQDP 1023
L A + + D +LL L C ++P +P +S+
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT----NPRRLSI--- 332
Query: 1024 YIAAKFSQRNIPYTFHLGNGQTYEGFVNKKLVRGLKYRIFVRAIVDTPQKHLYTSSPFSE 1083
IA R+ T+ ++ KL ++ + + + ++ +
Sbjct: 333 -IAESI--RDGLATW-----DNWKHVNCDKLTTIIE--SSLNVLEPAEYRKMF------D 376
Query: 1084 QLALDMREVPPGPPLKRPDPNIP-------------GDVRKDPCTSTSRSSCPWSAIPGD 1130
+L++ +IP DV S +
Sbjct: 377 RLSV-FPP----------SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV-------E 418
Query: 1131 NQYKPSTRISVTTQMAAPQPLVKPDFYGVVNGEEIQVILPQASEEYGPISHYYLIVVPED 1190
Q K ST IS+ P Y + + EY H ++
Sbjct: 419 KQPKEST-ISI------------PSIY--------LELKVKLENEYA--LHRSIV----- 450
Query: 1191 KMTYDKQPDQFLTDEMITRKDDPTVSLQDPYIAAKSLHV--HIQKLMSMEVGDTSTGMEL 1248
+ P F DD D Y + H+ H L ++E + T +
Sbjct: 451 --DHYNIPKTF-------DSDDLIPPYLDQYFYS---HIGHH---LKNIEHPERMTLFRM 495
Query: 1249 EFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLTPVRGKTEF--KKLSNIR 1306
F RF+ + ++ H ++ + + +F + +
Sbjct: 496 VFLDF--------RFL---------EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDND 538
Query: 1307 AEPSRFISA----------SLPCNKHKNRLVHI-LPVESSRVCLTPVRGIE 1346
+ R ++A +L C+K+ + L+ I L E + + ++
Sbjct: 539 PKYERLVNAILDFLPKIEENLICSKYTD-LLRIALMAEDEAIFEEAHKQVQ 588
Score = 52.9 bits (126), Expect = 1e-06
Identities = 81/612 (13%), Positives = 176/612 (28%), Gaps = 182/612 (29%)
Query: 1154 PDF-YGVVNGEEIQVILPQASEEYGPISHYYLIVVPEDKM--TYDK------QPD-QFLT 1203
D +++ EEI I+ G L K K + + +FL
Sbjct: 39 QDMPKSILSKEEIDHIIMSKDAVSGT---LRLFWTLLSKQEEMVQKFVEEVLRINYKFLM 95
Query: 1204 DEMITRKDDPTVSLQDPYIAAKS-LHVHIQKLMSMEVGDTSTGMELEFKKLSNIRAEPSR 1262
+ T + P++ YI + L+ Q V ++L + L +R P++
Sbjct: 96 SPIKTEQRQPSMM-TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR-QALLELR--PAK 151
Query: 1263 FIS------------ASLPCNKHKNRLVHILPVE----SSRVCLTPVRGKTEFKKL---- 1302
+ A C +K + + + + + C +P +KL
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYK--VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 1303 -SNIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLTPVRGIEGSDYINASFIDGYRL 1361
N + + L + + L +L + CL + ++ + NA F
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA-F------ 262
Query: 1362 RSAYIATQGPLADTTEDFWRMLWEHNSTIVVMLTKLKEMGRYVLREFKVTDARDATSRTL 1421
+ + I++ T R +VTD A + T
Sbjct: 263 ----------------NL-------SCKILL-TT----------RFKQVTDFLSAATTT- 287
Query: 1422 RQFQLIDWPEQGVPKSGDG-FIDFIGQ-VHKTKEQFGQDGPITVHCSLLS---------- 1469
L P + ++ + P S+++
Sbjct: 288 -HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR--RLSIIAESIRDGLATW 344
Query: 1470 ---LHINLTQSEWGREKPVAQLS-------------F-CSVLIAYLVL------------ 1500
H+N + E + L F S I ++L
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404
Query: 1501 -FSQEKCHQY-----WPSERSIRYEWFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQ 1554
K H+Y P E +I ++ Y+ + K+ + +
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISI----------PSI--YLELKVKLENEYALHRSIVDH 452
Query: 1555 FQLIDW--PEQGVPKSGDGFI-DFIGQVH-KTKEQFGQDGPITVHCSAGVGRTGVFITLS 1610
+ + + +P D + IG H K E + + VF+
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGH-HLKNIEHPERMTLFRM----------VFLDFR 501
Query: 1611 IVLERMQYEG--------VIDLFQTVRILRTQRPAMVQTEHLYTSSPFSEQLALDMREVP 1662
+ ++++++ +++ Q ++ + ++ + P E+L + +
Sbjct: 502 FLEQKIRHDSTAWNASGSILNTLQQLKFYK---------PYICDNDPKYERLVNAILDF- 551
Query: 1663 PGPPLKRPDPNI 1674
L + + N+
Sbjct: 552 ----LPKIEENL 559
Score = 46.8 bits (110), Expect = 8e-05
Identities = 87/620 (14%), Positives = 170/620 (27%), Gaps = 199/620 (32%)
Query: 945 CFIVIDAMIERIKHDKTVDIYGH----------VTCLRAQRNYMVQT------EDQYMFI 988
C V D + ++ I L +++ MVQ Y F+
Sbjct: 35 CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL 94
Query: 989 HDALLEAVL--CGNTEIPASSQMITRKDDP-----TVSLQDPYIAAK---FSQRNIPY-T 1037
+ T + + D+ VS PY+ + R
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL 154
Query: 1038 FH--LGNGQTY---EGFVNKKLVRGLKYRIF---------VRAIVDTPQKHLYTSSPFSE 1083
LG+G+T+ + ++ K+ + ++IF +++ QK LY P
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214
Query: 1084 QLALDMREVPPGPPLK--------------RPDPN---IPGDVRKDPCTSTSRSSCPWSA 1126
+ + L+ +P N + +V+ + W+A
Sbjct: 215 SRS----DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ-NAKA--------WNA 261
Query: 1127 IPGDNQYKPSTRISVTTQMAAPQPLVKPDFYGVVNGEEIQVILPQASEEYGPISHYYLIV 1186
+ S +I +TT+ V + +L
Sbjct: 262 ------FNLSCKILLTTRFK-----------QVTD---------------------FLSA 283
Query: 1187 VPEDKMTYDKQPDQFLTDEMITRKDDPTVSLQDPYIAAKSLHVHIQKLMSMEVGDTS--- 1243
++ D DE SL K L Q L EV T+
Sbjct: 284 ATTTHISLDHHSMTLTPDE--------VKSLL-----LKYLDCRPQDL-PREVLTTNPRR 329
Query: 1244 TGMELEFKKLSNIRAEPSRFISASLPCNKHKNRLVHILPVESSRVCLTPVRGKTEFKKLS 1303
+ E + + + ++ ++L I+ ESS L P + F +LS
Sbjct: 330 LSIIAESIRDGLATWDNWKHVN--------CDKLTTII--ESSLNVLEPAEYRKMFDRLS 379
Query: 1304 ------NI-------------RAEP----SRFISASLPCNKHKNRLVHILPVESSRVCLT 1340
+I +++ ++ SL K +P + +
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL-VEKQPKESTISIPSIYLELKVK 438
Query: 1341 PVRGIEGSDYINASFIDGYRLRSAYIATQGPLADTTEDFWRMLW-EHNSTIVVMLTKLKE 1399
+E ++ S +D Y + + D + + H I L ++
Sbjct: 439 ----LENEYALHRSIVDHYNIPKTF-----DSDDLIPPYLDQYFYSH---IGHHLKNIEH 486
Query: 1400 MGRYVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSG------DGFIDFIGQVHKTKE 1453
R L F+ F + EQ + ++ + Q+ K
Sbjct: 487 PERMTL--FR------------MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP 532
Query: 1454 QFGQDGPITVHCSLLSLHIN 1473
I + +N
Sbjct: 533 Y------ICDNDPKYERLVN 546
Score = 41.8 bits (97), Expect = 0.002
Identities = 48/295 (16%), Positives = 85/295 (28%), Gaps = 85/295 (28%)
Query: 1494 LIAYLVLFSQEKCHQYWPSER-SIRYEWFVVEPIAEYNMPQYVLREFKVTDARDATSRTL 1552
+ + +L QE+ Q + E I Y++ + E P + R + + RD
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY--IEQRDRLYNDN 123
Query: 1553 RQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGP---ITVHCSAGVGRT------ 1603
+ F + V + + K ++ + P + + G G+T
Sbjct: 124 QVF-----AKYNVSR--------LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170
Query: 1604 ------------GVF-ITLS------IVLERMQ---YEGVIDLFQTVRILRTQRPAMVQT 1641
+F + L VLE +Q Y+ ID T R + +
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ--IDPNWTSRSDHSSNIKLRIH 228
Query: 1642 E------HLYTSSPFSEQLALDMREVPPGPPLK------------RPDPNIPGDVPP--- 1680
L S P+ L L + V R + +
Sbjct: 229 SIQAELRRLLKSKPYENCL-LVLLNVQNAKAWNAFNLSCKILLTTR-FKQVTDFLSAATT 286
Query: 1681 VHVIVEHNSPGLLWIIGPIIAALALSICLVLLFILKSSL--ESSGVNLPVGPLIV 1733
H+ ++H+S L S+ L L L E N P +
Sbjct: 287 THISLDHHSMTLT-------PDEVKSLLLKYLDCRPQDLPREVLTTN----PRRL 330
>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer,
neovascularization, cell adhesion, protein binding,
oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A
Length = 203
Score = 63.3 bits (154), Expect = 4e-11
Identities = 19/132 (14%), Positives = 46/132 (34%), Gaps = 35/132 (26%)
Query: 41 PRRTLFLEPTETECTISELSPFTTYSVNIS------------------------LRAHDV 76
P F++ + T++ L P Y +++ LR ++
Sbjct: 66 PIFEDFVDSSVGYYTVTGLEPGIDYDISVYTVKNGGESTPTTLTQQTAVPPPTDLRFTNI 125
Query: 77 STHSMTLSWSPPIKLNPVKYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPTETECTISE 136
+M ++W+PP ++ + + V ++ + P++ ++
Sbjct: 126 GPDTMRVTWAPPPSIDLTNFLVRY----SPVKNEEDVAELSIS-------PSDNAVVLTN 174
Query: 137 LSPFTTYSVNIR 148
L P T Y V++
Sbjct: 175 LLPGTEYVVSVS 186
Score = 49.8 bits (119), Expect = 1e-06
Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 11/79 (13%)
Query: 70 SLRAHDVSTHSMTLSWSPPIKLNPVKYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPTE 129
L D++ S+ L W+P + Y+I+ V + P F++ +
Sbjct: 28 DLSFVDITDSSIGLRWTPLNSSTIIGYRIT---VVAAGEGI--------PIFEDFVDSSV 76
Query: 130 TECTISELSPFTTYSVNIR 148
T++ L P Y +++
Sbjct: 77 GYYTVTGLEPGIDYDISVY 95
>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins,
protein-protein interactions, C-type lectin domain;
2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
Length = 283
Score = 62.9 bits (153), Expect = 2e-10
Identities = 26/132 (19%), Positives = 46/132 (34%), Gaps = 34/132 (25%)
Query: 41 PRRTLFLEPTETECTISELSPFTTYSVNIS------------------------LRAHDV 76
+ T L+P ++ ++ L P + Y V+IS LR
Sbjct: 57 GKTTFRLQPPLSQYSVQALRPGSRYEVSISAVRGTNESDASSTQFTTEIDAPKNLRVGSR 116
Query: 77 STHSMTLSWSPPIKLNPVKYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPTETECTISE 136
+ S+ L W + +YK+ + +VP+ T+ T+++
Sbjct: 117 TATSLDLEWDNS-EAEAQEYKVVY-----STLAGEQYHEVLVPKGI----GPTTKTTLTD 166
Query: 137 LSPFTTYSVNIR 148
L P T Y V I
Sbjct: 167 LVPGTEYGVGIS 178
Score = 61.7 bits (150), Expect = 5e-10
Identities = 29/126 (23%), Positives = 44/126 (34%), Gaps = 40/126 (31%)
Query: 48 EPTETECTISELSPFTTYSVNIS------------------------LRAHDVSTHSMTL 83
T+ T+++L P T Y V IS L S S++L
Sbjct: 156 IGPTTKTTLTDLVPGTEYGVGISAVMNSKQSIPATMNARTELDSPRDLMVTASSETSISL 215
Query: 84 SWSPPIKLNPV-KYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPTETECTISELSPFTT 142
W+ P+ Y+I F S GI+ VP T T+++L P
Sbjct: 216 IWTKA--SGPIDHYRI------TFTPSSGISSEVTVP-------RDRTSYTLTDLEPGAE 260
Query: 143 YSVNIR 148
Y ++I
Sbjct: 261 YIISIT 266
Score = 47.5 bits (113), Expect = 2e-05
Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 24/104 (23%)
Query: 48 EPTETECTISELSPFTTYSVNISLRAHDVSTHSMTLSWSPP---IKLNPVKYKISLDAVK 104
+ I + T + DVS + W+PP + +KY +
Sbjct: 4 GISGGGGGIPVIDGPT------QILVRDVSDTVAFVEWTPPRAKVDFILLKYGLV----- 52
Query: 105 EFVDSQGITQTQIVPRRTLFLEPTETECTISELSPFTTYSVNIR 148
+G T + P ++ ++ L P + Y V+I
Sbjct: 53 ---GGEGGKTTFRLQ-------PPLSQYSVQALRPGSRYEVSIS 86
Score = 30.9 bits (70), Expect = 3.6
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Query: 27 EFVDSQGITQTQIVPRRTLFLEPTETECTISELSPFTTYSVNIS 70
F S GI+ VP T T+++L P Y ++I+
Sbjct: 230 TFTPSSGISSEVTVP-------RDRTSYTLTDLEPGAEYIISIT 266
>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III
domain, oncofetal splice VARI extra-domain B, EIIIB,
ED-B, angiogenesis, integrin; 2.40A {Homo sapiens}
Length = 375
Score = 63.7 bits (155), Expect = 2e-10
Identities = 19/132 (14%), Positives = 46/132 (34%), Gaps = 35/132 (26%)
Query: 41 PRRTLFLEPTETECTISELSPFTTYSVNIS------------------------LRAHDV 76
P F++ + T++ L P Y +++ LR ++
Sbjct: 139 PIFEDFVDSSVGYYTVTGLEPGIDYDISVITLINGGESAPTTLTQQTAVPPPTDLRFTNI 198
Query: 77 STHSMTLSWSPPIKLNPVKYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPTETECTISE 136
+M ++W+PP ++ + + V ++ + P++ ++
Sbjct: 199 GPDTMRVTWAPPPSIDLTNFLVRY----SPVKNEEDVAELSIS-------PSDNAVVLTN 247
Query: 137 LSPFTTYSVNIR 148
L P T Y V++
Sbjct: 248 LLPGTEYVVSVS 259
Score = 63.7 bits (155), Expect = 2e-10
Identities = 25/132 (18%), Positives = 45/132 (34%), Gaps = 36/132 (27%)
Query: 41 PRRTLFLEPTETECTISELSPFTTYSVNIS------------------------LRAHDV 76
L + P++ ++ L P T Y V++S + D+
Sbjct: 230 DVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQKTGLDSPTGIDFSDI 289
Query: 77 STHSMTLSWSPPIKLNPVKYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPTETECTISE 136
+ +S T+ W P + Y+I G + VP + T++
Sbjct: 290 TANSFTVHWIAP-RATITGYRIRHHPE----HFSGRPREDRVP-------HSRNSITLTN 337
Query: 137 LSPFTTYSVNIR 148
L+P T Y V+I
Sbjct: 338 LTPGTEYVVSIV 349
Score = 62.1 bits (151), Expect = 7e-10
Identities = 25/138 (18%), Positives = 48/138 (34%), Gaps = 35/138 (25%)
Query: 35 TQTQIVPRRTLFLEPTETECTISELSPFTTYSVNI------------------------S 70
T Q + ++ CT LSP Y+V++
Sbjct: 42 TNGQQGNSLEEVVHADQSSCTFDNLSPGLEYNVSVYTVKDDKESVPISDTIIPEVPQLTD 101
Query: 71 LRAHDVSTHSMTLSWSPPIKLNPVKYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPTET 130
L D++ S+ L W+P + Y+I++ A E +P F++ +
Sbjct: 102 LSFVDITDSSIGLRWTPLNSSTIIGYRITVVAAGE-----------GIPIFEDFVDSSVG 150
Query: 131 ECTISELSPFTTYSVNIR 148
T++ L P Y +++
Sbjct: 151 YYTVTGLEPGIDYDISVI 168
Score = 49.8 bits (119), Expect = 5e-06
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 11/81 (13%)
Query: 68 NISLRAHDVSTHSMTLSWSPPIKLNPVKYKISLDAVKEFVDSQGITQTQIVPRRTLFLEP 127
N+ L A + T +T+SW + Y+I+ QG + ++V
Sbjct: 8 NLHLEA-NPDTGVLTVSWERSTTPDITGYRIT---TTPTNGQQGNSLEEVVH-------A 56
Query: 128 TETECTISELSPFTTYSVNIR 148
++ CT LSP Y+V++
Sbjct: 57 DQSSCTFDNLSPGLEYNVSVY 77
>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein;
2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A
Length = 368
Score = 62.9 bits (153), Expect = 3e-10
Identities = 24/126 (19%), Positives = 44/126 (34%), Gaps = 36/126 (28%)
Query: 47 LEPTETECTISELSPFTTYSVNIS------------------------LRAHDVSTHSMT 82
+ P++ ++ L P T Y V++S + D++ +S T
Sbjct: 144 ISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQKTGLDSPTGIDFSDITANSFT 203
Query: 83 LSWSPPIKLNPVKYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPTETECTISELSPFTT 142
+ W P + Y+I G + VP + T++ L+P T
Sbjct: 204 VHWIAP-RATITGYRIR----HHPEHFSGRPREDRVP-------HSRNSITLTNLTPGTE 251
Query: 143 YSVNIR 148
Y V+I
Sbjct: 252 YVVSIV 257
Score = 61.8 bits (150), Expect = 7e-10
Identities = 21/138 (15%), Positives = 47/138 (34%), Gaps = 35/138 (25%)
Query: 35 TQTQIVPRRTLFLEPTETECTISELSPFTTYSVNI------------------------S 70
T Q + ++ CT LSP Y+V++
Sbjct: 41 TNGQQGNSLEEVVHADQSSCTFDNLSPGLEYNVSVYTVKDDKESVPISDTIIPAVPPPTD 100
Query: 71 LRAHDVSTHSMTLSWSPPIKLNPVKYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPTET 130
LR ++ +M ++W+PP ++ + + + + + + P++
Sbjct: 101 LRFTNIGPDTMRVTWAPPPSIDLTNFLV------RYSPVKNEEDVAELS-----ISPSDN 149
Query: 131 ECTISELSPFTTYSVNIR 148
++ L P T Y V++
Sbjct: 150 AVVLTNLLPGTEYVVSVS 167
Score = 60.2 bits (146), Expect = 2e-09
Identities = 24/132 (18%), Positives = 42/132 (31%), Gaps = 36/132 (27%)
Query: 41 PRRTLFLEPTETECTISELSPFTTYSVNIS------------------------LRAHDV 76
R + + T++ L+P T Y V+I L
Sbjct: 228 RPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLLIGQQSTVSDVPRDLEVVAA 287
Query: 77 STHSMTLSWSPPIKLNPVKYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPTETECTISE 136
+ S+ +SW P + Y+I+ Q VP +++ TIS
Sbjct: 288 TPTSLLISWDAP-AVTVRYYRITYGE----TGGNSPVQEFTVP-------GSKSTATISG 335
Query: 137 LSPFTTYSVNIR 148
L P Y++ +
Sbjct: 336 LKPGVDYTITVY 347
Score = 49.4 bits (118), Expect = 7e-06
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 11/81 (13%)
Query: 68 NISLRAHDVSTHSMTLSWSPPIKLNPVKYKISLDAVKEFVDSQGITQTQIVPRRTLFLEP 127
N+ L A+ T +T+SW + Y+I+ QG + ++V
Sbjct: 7 NLHLEAN-PDTGVLTVSWERSTTPDITGYRIT---TTPTNGQQGNSLEEVVH-------A 55
Query: 128 TETECTISELSPFTTYSVNIR 148
++ CT LSP Y+V++
Sbjct: 56 DQSSCTFDNLSPGLEYNVSVY 76
>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A
{Homo sapiens} PDB: 1fnh_A
Length = 290
Score = 61.4 bits (149), Expect = 6e-10
Identities = 24/135 (17%), Positives = 45/135 (33%), Gaps = 41/135 (30%)
Query: 41 PRRTLFLEPTETECTISELSPFTTYSVNIS--------------------------LRAH 74
P + + L P + +S L T Y V++ R
Sbjct: 63 PMKEINLAPDSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQGVVTTLENVSPPRRARVT 122
Query: 75 DVSTHSMTLSWSPPIKLNPV-KYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPTETECT 133
D + ++T+SW + +++ + V + G T Q ++P T
Sbjct: 123 DATETTITISWRTK--TETITGFQV------DAVPANGQTPIQRT------IKPDVRSYT 168
Query: 134 ISELSPFTTYSVNIR 148
I+ L P T Y + +
Sbjct: 169 ITGLQPGTDYKIYLY 183
Score = 59.0 bits (143), Expect = 3e-09
Identities = 25/126 (19%), Positives = 43/126 (34%), Gaps = 36/126 (28%)
Query: 47 LEPTETECTISELSPFTTYSVNIS------------------------LRAHDVSTHSMT 82
++P TI+ L P T Y + + LR + +S+
Sbjct: 160 IKPDVRSYTITGLQPGTDYKIYLYTLNDNARSSPVVIDASTAIDAPSNLRFLATTPNSLL 219
Query: 83 LSWSPPIKLNPVKYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPTETECTISELSPFTT 142
+SW PP + Y I ++ + + P TE TI+ L P T
Sbjct: 220 VSWQPP-RARITGYII------KYEKPGSPPREVVPR-----PRPGVTEATITGLEPGTE 267
Query: 143 YSVNIR 148
Y++ +
Sbjct: 268 YTIYVI 273
Score = 47.9 bits (114), Expect = 1e-05
Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 12/79 (15%)
Query: 70 SLRAHDVSTHSMTLSWSPPIKLNPVKYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPTE 129
L+ V+ S++ W+PP + Y++ + + + L P
Sbjct: 26 DLKFTQVTPTSLSAQWTPP-NVQLTGYRV------RVTPKEKTGPMKEIN-----LAPDS 73
Query: 130 TECTISELSPFTTYSVNIR 148
+ +S L T Y V++
Sbjct: 74 SSVVVSGLMVATKYEVSVY 92
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 62.9 bits (152), Expect = 8e-10
Identities = 30/143 (20%), Positives = 44/143 (30%), Gaps = 34/143 (23%)
Query: 36 QTQIVPRRTLFLEPTETECTISELSPFTTYSVNIS------------------------- 70
Q Q+ + E + + TI+ LSP+T SV +
Sbjct: 406 QEQVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRKESQELIVQTDEDLPGAV 465
Query: 71 ---LRAHDVSTHSMTLSWSPPIKLNPV--KYKISLDAVKEFVDSQGITQTQIVPRRTLFL 125
+ L W P + V Y+I+ AV F ++ +
Sbjct: 466 PTESIQGSTFEEKIFLQWREPTQTYGVITLYEITYKAVSSFDPEIDLSN----QSGRVSK 521
Query: 126 EPTETECTISELSPFTTYSVNIR 148
ET L P TTYS IR
Sbjct: 522 LGNETHFLFFGLYPGTTYSFTIR 544
Score = 49.0 bits (116), Expect = 1e-05
Identities = 21/132 (15%), Positives = 40/132 (30%), Gaps = 38/132 (28%)
Query: 50 TETECTISELSPFTTYSVNI-------------------------------SLRAHDVST 78
T I L P T Y +++ L +V +
Sbjct: 314 DSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKS 373
Query: 79 HSMTLSWSPPIK--LNPVKYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPTETECTISE 136
+T+ W P Y +++ + + + + E + + TI+
Sbjct: 374 RQITIRWEPFGYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDT-----ENSHPQHTITN 428
Query: 137 LSPFTTYSVNIR 148
LSP+T SV +
Sbjct: 429 LSPYTNVSVKLI 440
Score = 46.3 bits (109), Expect = 9e-05
Identities = 21/114 (18%), Positives = 42/114 (36%), Gaps = 8/114 (7%)
Query: 999 GNTEIPASSQMITRKDDPTVSLQDPYIAAKFSQRNIPYT--FHLGNGQTYEGFVNKKLVR 1056
TEI + + ++ Y AA+F ++ F +G+ +TY G+ N L+
Sbjct: 615 KTTEILKCYPVPIHFQNASLLNSQYYFAAEFPADSLQAAQPFTIGDNKTYNGYWNTPLLP 674
Query: 1057 GLKYRIFVRAIVDTPQKHLYTSSPFSEQLALDMREVPPGPPLKRPDPNIPGDVR 1110
YRI+ +A + + + + P+ P+ V+
Sbjct: 675 YKSYRIYFQAASRANG------ETKIDCVQVATKGAATPKPVPEPEKQTDHTVK 722
Score = 40.5 bits (94), Expect = 0.006
Identities = 22/111 (19%), Positives = 40/111 (36%), Gaps = 1/111 (0%)
Query: 1135 PSTRISVTTQMAAP-QPLVKPDFYGVVNGEEIQVILPQASEEYGPISHYYLIVVPEDKMT 1193
P TT+++AP P + + + V+L A P+S Y ++V E
Sbjct: 553 PPATNQFTTKISAPSMPAYELETPLNQTDNTVTVMLKPAHSRGAPVSVYQIVVEEERPRR 612
Query: 1194 YDKQPDQFLTDEMITRKDDPTVSLQDPYIAAKSLHVHIQKLMSMEVGDTST 1244
K + + + ++ Y AA+ +Q +GD T
Sbjct: 613 TKKTTEILKCYPVPIHFQNASLLNSQYYFAAEFPADSLQAAQPFTIGDNKT 663
Score = 36.3 bits (83), Expect = 0.094
Identities = 22/183 (12%), Positives = 43/183 (23%), Gaps = 65/183 (35%)
Query: 29 VDSQGITQTQIVPRRTLFLEPTETECTISELSPFTTYSVNISLRAH-------------- 74
V S + ET L P TTYS ++RA
Sbjct: 503 VSSFDPEIDLSNQSGRVSKLGNETHFLFFGLYPGTTYSF--TIRASTAKGFGPPATNQFT 560
Query: 75 -----------------DVSTHSMTLSWSPPIKLNPV--KYKISLDAVKEFVDSQGITQT 115
+ + +++T+ P Y+I ++ + +
Sbjct: 561 TKISAPSMPAYELETPLNQTDNTVTVMLKPAHSRGAPVSVYQIVVEEERPRRTKKTTEIL 620
Query: 116 QIVPRR------------------------------TLFLEPTETECTISELSPFTTYSV 145
+ P T+ T + L P+ +Y +
Sbjct: 621 KCYPVPIHFQNASLLNSQYYFAAEFPADSLQAAQPFTIGDNKTYNGYWNTPLLPYKSYRI 680
Query: 146 NIR 148
+
Sbjct: 681 YFQ 683
Score = 35.1 bits (80), Expect = 0.24
Identities = 16/134 (11%), Positives = 30/134 (22%), Gaps = 37/134 (27%)
Query: 71 LRAHDVSTHSMTLSWSPPIKLNP---VKYKISLDAVKEFVDSQGITQTQIVPRRTLFLEP 127
+ V + + + V ++ E+ + G +
Sbjct: 268 PQLASVGATYLWIQLNANSINGDGPIVAREV------EYCTASGSWNDRQPV-------- 313
Query: 128 TETECTISELSPFTTYSVNIRRRQPRKYPESSAVTRPLMSGEIMTSHAPSDPVEMRRLNF 187
T I L P T Y +++ GE T P + R
Sbjct: 314 DSTSYKIGHLDPDTEYEISVL-----------LTR----PGEGGTGS-PGPALRTR---- 353
Query: 188 QTPGMVSHPPIPIS 201
P +
Sbjct: 354 TKCADPMRGPRKLE 367
>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma,
epidermolysis bullosa, alternative splicing, disease
mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo
sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A
Length = 234
Score = 59.0 bits (143), Expect = 2e-09
Identities = 18/132 (13%), Positives = 36/132 (27%), Gaps = 36/132 (27%)
Query: 47 LEPTETECTISELSPFTTYSVNI----------------------------SLRAHDVST 78
L+ ++ L P+ Y + + L + VS+
Sbjct: 53 LDSKVPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSEPGRLAFNVVSS 112
Query: 79 HSMTLSWSPPIKLN--PVKYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPTETECTISE 136
LSW+ P + N Y++ + + ++ L P I
Sbjct: 113 TVTQLSWAEPAETNGEITAYEV------CYGLVNDDNRPIGPMKKVLVDNPKNRMLLIEN 166
Query: 137 LSPFTTYSVNIR 148
L Y ++
Sbjct: 167 LRESQPYRYTVK 178
Score = 41.7 bits (98), Expect = 0.001
Identities = 9/79 (11%), Positives = 27/79 (34%), Gaps = 13/79 (16%)
Query: 70 SLRAHDVSTHSMTLSWSPPIKLNPVKYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPTE 129
+ A + + +W PP P+ Y++ ++ ++ ++
Sbjct: 11 NPNAKAAGSRKIHFNWLPP-SGKPMGYRVKY-----WIQGDSESEAHLLD-------SKV 57
Query: 130 TECTISELSPFTTYSVNIR 148
++ L P+ Y + +
Sbjct: 58 PSVELTNLYPYCDYEMKVC 76
>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular
matrix, adhesion, fusion protein, structural protein;
2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1
Length = 186
Score = 56.7 bits (137), Expect = 5e-09
Identities = 26/147 (17%), Positives = 49/147 (33%), Gaps = 46/147 (31%)
Query: 27 EFVDSQGITQTQIVPRRTLFLEPTETECTISELSPFTTYSVNIS---------------- 70
+V G +P T + L T Y++++
Sbjct: 40 TYVSPSGKKNEMEIP-------VDSTSFILRGLDAGTEYTISLVAEKGRHKSKPTTIKGS 92
Query: 71 --------LRAHDVSTHSMTLSWSPPIKLNPV-KYKISLDAVKEFVDSQGITQTQIVPRR 121
+ D++ +S T+SW+PP + V Y++S + + G V
Sbjct: 93 TVVGSPKGISFSDITENSATVSWTPP--RSRVDSYRVSYVPI-----TGGTPNVVTVD-- 143
Query: 122 TLFLEPTETECTISELSPFTTYSVNIR 148
++T + +L P Y+VNI
Sbjct: 144 -----GSKTRTKLVKLVPGVDYNVNII 165
Score = 48.6 bits (116), Expect = 3e-06
Identities = 13/80 (16%), Positives = 28/80 (35%), Gaps = 16/80 (20%)
Query: 70 SLRAHDVSTHSMTLSWSPPIKLNPV-KYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPT 128
L D + +++L W P + +Y++ +V G +P
Sbjct: 12 DLEVSDPTETTLSLRWRRP--VAKFDRYRL------TYVSPSGKKNEMEIP-------VD 56
Query: 129 ETECTISELSPFTTYSVNIR 148
T + L T Y++++
Sbjct: 57 STSFILRGLDAGTEYTISLV 76
>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 53.6 bits (129), Expect = 9e-09
Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 14/78 (17%)
Query: 71 LRAHDVSTHSMTLSWSPPIKLNPVKYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPTET 130
L A +V+ + L+W+ P + P Y + F G TQ ++P T
Sbjct: 14 LEAKEVTPRTALLTWTEP-PVRPAGYLL------SFHTPGGQTQEILLP-------GGIT 59
Query: 131 ECTISELSPFTTYSVNIR 148
+ L P T+Y+ ++
Sbjct: 60 SHQLLGLFPSTSYNARLQ 77
Score = 34.7 bits (80), Expect = 0.045
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 41 PRRTLFLEPTETECTISELSPFTTYSVNIS 70
+ + L T + L P T+Y+ +
Sbjct: 48 QTQEILLPGGITSHQLLGLFPSTSYNARLQ 77
>3k2m_C Monobody HA4; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding, phosphoprotein;
1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A
1fna_A
Length = 101
Score = 52.5 bits (126), Expect = 3e-08
Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 12/80 (15%)
Query: 70 SLRAHDVSTHSMTLSWSPPIKLNPV-KYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPT 128
L + S+ +SW P+ + V Y+I+ Q VP +
Sbjct: 10 KLEVVAATPTSLLISWDAPMSSSSVYYYRITYGET----GGNSPVQEFTVP-------YS 58
Query: 129 ETECTISELSPFTTYSVNIR 148
+ TIS LSP Y++ +
Sbjct: 59 SSTATISGLSPGVDYTITVY 78
Score = 37.1 bits (86), Expect = 0.005
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 41 PRRTLFLEPTETECTISELSPFTTYSVNISLRAHDVSTHSMTLSWSP 87
P + + + + TIS LSP Y I++ A + +SP
Sbjct: 49 PVQEFTVPYSSSTATISGLSPGVDY--TITVYAWGEDSAGYMFMYSP 93
>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell
adhesion, coiled coil, EGF-like domain, extracellular
matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A
1ten_A
Length = 104
Score = 51.2 bits (123), Expect = 6e-08
Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 14/80 (17%)
Query: 70 SLRAHDVSTHSMTLSWSPPIKLNPV-KYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPT 128
+ DV+ + ++W PP PV ++++ D G T +
Sbjct: 8 QIEVKDVTDTTALITWMPP--SQPVDGFELTY----GIKDVPGDRTTIDLT-------ED 54
Query: 129 ETECTISELSPFTTYSVNIR 148
E + +I L P T Y V++
Sbjct: 55 ENQYSIGNLKPDTEYEVSLI 74
Score = 33.5 bits (77), Expect = 0.11
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 41 PRRTLFLEPTETECTISELSPFTTYSVNIS 70
R T+ L E + +I L P T Y V++
Sbjct: 45 DRTTIDLTEDENQYSIGNLKPDTEYEVSLI 74
>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 115
Score = 51.3 bits (123), Expect = 1e-07
Identities = 15/79 (18%), Positives = 25/79 (31%), Gaps = 14/79 (17%)
Query: 70 SLRAHDVSTHSMTLSWSPPIKLNPVKYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPTE 129
LRA +++ L W PP Y I + A P +
Sbjct: 13 QLRALNLTEGFAVLHWKPPQN-PVDTYDIQVTA------PGAPPLQAETP-------GSA 58
Query: 130 TECTISELSPFTTYSVNIR 148
+ + +L T Y+ +R
Sbjct: 59 VDYPLHDLVLHTNYTATVR 77
Score = 31.3 bits (71), Expect = 0.85
Identities = 4/30 (13%), Positives = 10/30 (33%)
Query: 41 PRRTLFLEPTETECTISELSPFTTYSVNIS 70
P + + + +L T Y+ +
Sbjct: 48 PPLQAETPGSAVDYPLHDLVLHTNYTATVR 77
>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain,
fibron type III, cell adhesion; 1.80A {Homo sapiens}
PDB: 1x5k_A
Length = 211
Score = 53.3 bits (128), Expect = 1e-07
Identities = 17/139 (12%), Positives = 37/139 (26%), Gaps = 42/139 (30%)
Query: 43 RTLFLEPTETECTISELSPFTTYSV-------------------------------NISL 71
+ T ++ L P T Y ++++
Sbjct: 55 KYKNANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTV 114
Query: 72 RAHDVSTHSMTLSWSPPIKLN-PVK-YKISLDAVKEFVDSQGITQTQIVPRRTLFLEPTE 129
+ + ++ ++W PP + N + Y I + + +
Sbjct: 115 VSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEP---------VVGNR 165
Query: 130 TECTISELSPFTTYSVNIR 148
I EL+ T Y I+
Sbjct: 166 LTHQIQELTLDTPYYFKIQ 184
Score = 37.9 bits (88), Expect = 0.014
Identities = 10/84 (11%), Positives = 27/84 (32%), Gaps = 18/84 (21%)
Query: 71 LRAHDVSTHSMTLSWSPP------IKLNPVKYKISLDAVKEFVDSQGITQTQIVPRRTLF 124
++A +S ++ ++W+ + Y + K + + +
Sbjct: 11 VQASILSHDTIRITWADNSLPKHQKITDSRYYTVR---WKTNIPANTKYKN--------- 58
Query: 125 LEPTETECTISELSPFTTYSVNIR 148
T ++ L P T Y ++
Sbjct: 59 ANATTLSYLVTGLKPNTLYEFSVM 82
>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design,
S de novo protein; HET: DIO; 1.00A {Synthetic}
Length = 98
Score = 50.1 bits (120), Expect = 2e-07
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 14/80 (17%)
Query: 70 SLRAHDVSTHSMTLSWSPPIKLNPV-KYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPT 128
L+ +V+ S+T+SW+PP + Y+I+ + G + VP P+
Sbjct: 7 DLQVTNVTDTSITVSWTPP--SATITGYRITYTPS----NGPGEPKELTVP-------PS 53
Query: 129 ETECTISELSPFTTYSVNIR 148
T TI+ L+P Y V++
Sbjct: 54 STSVTITGLTPGVEYVVSVY 73
Score = 31.2 bits (71), Expect = 0.63
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 7/42 (16%)
Query: 29 VDSQGITQTQIVPRRTLFLEPTETECTISELSPFTTYSVNIS 70
+ G + VP P+ T TI+ L+P Y V++
Sbjct: 39 SNGPGEPKELTVP-------PSSTSVTITGLTPGVEYVVSVY 73
>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 104
Score = 50.2 bits (120), Expect = 2e-07
Identities = 13/79 (16%), Positives = 26/79 (32%), Gaps = 13/79 (16%)
Query: 70 SLRAHDVSTHSMTLSWSPPIKLNPVKYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPTE 129
+L V+ ++ L+W P Y + +G + + V
Sbjct: 14 ALTLAAVTPRTVHLTWQPS--AGATHYLVRCSPA----SPKGEEEEREVQ-------VGR 60
Query: 130 TECTISELSPFTTYSVNIR 148
E + L P Y V+++
Sbjct: 61 PEVLLDGLEPGRDYEVSVQ 79
Score = 30.6 bits (69), Expect = 1.3
Identities = 5/30 (16%), Positives = 10/30 (33%)
Query: 41 PRRTLFLEPTETECTISELSPFTTYSVNIS 70
++ E + L P Y V++
Sbjct: 50 EEEEREVQVGRPEVLLDGLEPGRDYEVSVQ 79
>2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein; NMR
{Homo sapiens} PDB: 2h45_A
Length = 95
Score = 49.8 bits (119), Expect = 2e-07
Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 14/80 (17%)
Query: 70 SLRAHDVSTHSMTLSWSPPIKLNPV-KYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPT 128
S +++ S +SW + V +++ E + Q +P T
Sbjct: 11 SESVTEITASSFVVSWVSA--SDTVSGFRVE----YELSEEGDEPQYLDLP-------ST 57
Query: 129 ETECTISELSPFTTYSVNIR 148
T I +L P Y VN+
Sbjct: 58 ATSVNIPDLLPGRKYIVNVY 77
Score = 31.3 bits (71), Expect = 0.57
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 41 PRRTLFLEPTETECTISELSPFTTYSVNIS 70
+ L L T T I +L P Y VN+
Sbjct: 48 EPQYLDLPSTATSVNIPDLLPGRKYIVNVY 77
>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative
splicing, cell adhesion, coiled coil, EGF-like domain,
extracellular matrix; 2.40A {Homo sapiens}
Length = 100
Score = 50.1 bits (120), Expect = 2e-07
Identities = 13/80 (16%), Positives = 32/80 (40%), Gaps = 14/80 (17%)
Query: 70 SLRAHDVSTHSMTLSWSPPIKLNPV-KYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPT 128
+++ +++ + ++W PP + P+ ++ + T + +
Sbjct: 7 NIKVTNITLTTAVVTWQPP--ILPIEGILVT----FGRKNDPSDETTVDLT-------SS 53
Query: 129 ETECTISELSPFTTYSVNIR 148
T T++ L P TTY + I
Sbjct: 54 ITSLTLTNLEPNTTYEIRIV 73
Score = 31.6 bits (72), Expect = 0.52
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 42 RRTLFLEPTETECTISELSPFTTYSVNIS 70
T+ L + T T++ L P TTY + I
Sbjct: 45 ETTVDLTSSITSLTLTNLEPNTTYEIRIV 73
>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural
protein; 1.65A {Homo sapiens}
Length = 197
Score = 52.3 bits (126), Expect = 2e-07
Identities = 20/131 (15%), Positives = 33/131 (25%), Gaps = 44/131 (33%)
Query: 49 PTETECTISELSPFTTYS-----VNI-----------------------SLRAHDVSTHS 80
+T + +L +Y N + DV+ +S
Sbjct: 59 CHKTSWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASERPLPPGKITLMDVTRNS 118
Query: 81 MTLSWSPPIKLN--PV-KYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPTETECTISEL 137
++LSW P + Y + E TE TI+ L
Sbjct: 119 VSLSWEKPEHDGGSRILGYIV------EMQTKGSDKWATCA-------TVKVTEATITGL 165
Query: 138 SPFTTYSVNIR 148
YS +
Sbjct: 166 IQGEEYSFRVS 176
Score = 42.3 bits (100), Expect = 4e-04
Identities = 14/82 (17%), Positives = 30/82 (36%), Gaps = 15/82 (18%)
Query: 70 SLRAHDVSTHSMTLSWSPPIKLN--PV-KYKISLDAVKEFVDSQGITQTQIVPRRTLFLE 126
L+ +V+ S+TL+W PP+ + Y + E +S + +
Sbjct: 11 DLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIV------EKRESTRKAYSTVAT------N 58
Query: 127 PTETECTISELSPFTTYSVNIR 148
+T + +L +Y +
Sbjct: 59 CHKTSWKVDQLQEGCSYYFRVL 80
Score = 29.6 bits (67), Expect = 7.3
Identities = 7/24 (29%), Positives = 8/24 (33%)
Query: 44 TLFLEPTETECTISELSPFTTYSV 67
TE TI+ L YS
Sbjct: 150 ATCATVKVTEATITGLIQGEEYSF 173
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera
phosphorylation, transmembrane, tyrosine-protein kinase,
glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB:
2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Length = 536
Score = 54.4 bits (130), Expect = 3e-07
Identities = 24/129 (18%), Positives = 41/129 (31%), Gaps = 43/129 (33%)
Query: 50 TETECTISELSPFTTYSVNIS----------------------------LRAHDVSTHSM 81
T T T+S+L P Y+ + +R ST S+
Sbjct: 398 TRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTASVSINQTEPPKVRLEGRSTTSL 457
Query: 82 TLSWSPPIKLNPV--KYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPTETECTISELSP 139
++SWS P KY++ + + T+ +L+P
Sbjct: 458 SVSWSIPPPQQSRVWKYEV------TYRKKGDSNSYNVR-------RTEGFSVTLDDLAP 504
Query: 140 FTTYSVNIR 148
TTY V ++
Sbjct: 505 DTTYLVQVQ 513
Score = 40.9 bits (95), Expect = 0.003
Identities = 13/76 (17%), Positives = 23/76 (30%), Gaps = 4/76 (5%)
Query: 76 VSTHSMTLSWSPPIKLN---PVKYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPTETEC 132
+ L W+PP + Y ++ + V T T
Sbjct: 344 GMGAKVELRWTPPQDSGGREDIVYSVT-CEQCWPESGECGPCEASVRYSEPPHGLTRTSV 402
Query: 133 TISELSPFTTYSVNIR 148
T+S+L P Y+ +
Sbjct: 403 TVSDLEPHMNYTFTVE 418
Score = 30.1 bits (67), Expect = 7.8
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 47 LEPTETECTISELSPFTTYSV 67
T+ +L+P TTY V
Sbjct: 490 RRTEGFSVTLDDLAPDTTYLV 510
>1fpz_A Cyclin-dependent kinase inhibitor 3; alpha-beta sandwich,
hydrolase; 2.00A {Homo sapiens} SCOP: c.45.1.1 PDB:
1fq1_A*
Length = 212
Score = 52.4 bits (125), Expect = 3e-07
Identities = 18/137 (13%), Positives = 38/137 (27%), Gaps = 21/137 (15%)
Query: 343 VTLQDVQELASYCIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAM 402
EL+ Y + ++ I D G P+ + +
Sbjct: 76 FVFCTRGELSKYRVPNL----LDLYQQCGIITHHH-PIADGGTPD--------IASCCEI 122
Query: 403 NPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRA 462
+ + ++H G+GR+ ++ + LR
Sbjct: 123 MEELTTCLKNY-----RKTLIHSYGGLGRSCLVAAC-LLLYLSDTISPEQAIDSLRDLRG 176
Query: 463 QRNYMVQTEDQYMFIHD 479
+QT QY ++H+
Sbjct: 177 SG--AIQTIKQYNYLHE 191
Score = 52.4 bits (125), Expect = 3e-07
Identities = 18/137 (13%), Positives = 38/137 (27%), Gaps = 21/137 (15%)
Query: 854 VTLQDVQELASYCIRTFMINKGADSERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAM 913
EL+ Y + ++ I D G P+ + +
Sbjct: 76 FVFCTRGELSKYRVPNL----LDLYQQCGIITHHH-PIADGGTPD--------IASCCEI 122
Query: 914 NPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRA 973
+ + ++H G+GR+ ++ + LR
Sbjct: 123 MEELTTCLKNY-----RKTLIHSYGGLGRSCLVAAC-LLLYLSDTISPEQAIDSLRDLRG 176
Query: 974 QRNYMVQTEDQYMFIHD 990
+QT QY ++H+
Sbjct: 177 SG--AIQTIKQYNYLHE 191
Score = 38.5 bits (89), Expect = 0.010
Identities = 13/80 (16%), Positives = 25/80 (31%), Gaps = 8/80 (10%)
Query: 657 GIPGRDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVIDL 716
G P + + ++ +H G+GR+ + + + I
Sbjct: 112 GTPDIASCCEIMEELTT---CLKNYRKTLIHSYGGLGRSCLVAACLL----LYLSDTISP 164
Query: 717 FQTVRILRTQR-PAMVQTES 735
Q + LR R +QT
Sbjct: 165 EQAIDSLRDLRGSGAIQTIK 184
Score = 38.1 bits (88), Expect = 0.014
Identities = 16/108 (14%), Positives = 34/108 (31%), Gaps = 9/108 (8%)
Query: 1536 LREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVH 1595
L +++V + D + + G P + + ++ +H
Sbjct: 84 LSKYRVPNLLDLYQQCGIITHHHPIADGGTP-DIASCCEIMEELTT---CLKNYRKTLIH 139
Query: 1596 CSAGVGRTGVFITLSIVLERMQYEGVIDLFQTVRILRTQR-PAMVQTE 1642
G+GR+ + + + I Q + LR R +QT
Sbjct: 140 SYGGLGRSCLVAACLL----LYLSDTISPEQAIDSLRDLRGSGAIQTI 183
>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 119
Score = 50.1 bits (120), Expect = 3e-07
Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 70 SLRAHDVSTHSMTLSWSPPIKLNPV--KYKISLDAVKEFVDSQGITQTQIVPRRTLFLEP 127
L ++ S+ +SW P + N + Y+IS E + T +P
Sbjct: 23 HLSFSEILDTSLKVSWQEPGEKNGILTGYRISW----EEYNRTNTRVTHYLP-------N 71
Query: 128 TETECTISELSPFTTYSVNIR 148
E ++ L+ TTY++ +
Sbjct: 72 VTLEYRVTGLTALTTYTIEVA 92
Score = 30.9 bits (70), Expect = 1.2
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 41 PRRTLFLEPTETECTISELSPFTTYSVNIS 70
R T +L E ++ L+ TTY++ ++
Sbjct: 63 TRVTHYLPNVTLEYRVTGLTALTTYTIEVA 92
>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 105
Score = 49.4 bits (118), Expect = 3e-07
Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 14/79 (17%)
Query: 71 LRAHDVSTHSMTLSWSPPIKLNPV-KYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPTE 129
L + S+ +SW+PP+ V Y ++ G ++ VP
Sbjct: 14 LALASETPDSLQVSWTPPL--GRVLHYWLTYAPA----SGLGPEKSVSVP-------GAR 60
Query: 130 TECTISELSPFTTYSVNIR 148
+ T+ +L T Y V +
Sbjct: 61 SHVTLPDLQAATKYRVLVS 79
Score = 34.3 bits (79), Expect = 0.064
Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 9/55 (16%)
Query: 41 PRRTLFLEPTETECTISELSPFTTYSVNISLRAHD-------VSTHSMTLSWSPP 88
P +++ + + T+ +L T Y + + A VS T S P
Sbjct: 50 PEKSVSVPGARSHVTLPDLQAATKY--RVLVSAIYAAGRSEAVSATGQTACPSGP 102
>3t04_D Monobody 7C12; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding, phosphoprotein;
2.10A {Homo sapiens}
Length = 103
Score = 48.6 bits (116), Expect = 5e-07
Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 13/80 (16%)
Query: 71 LRAHDVSTHSMTLSWSPPIKLN-PV-KYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPT 128
L D + S+ +SW V Y+I+ Q VP
Sbjct: 14 LEVVDATPTSLKISWDAYYSSWQNVKYYRITYGET----GGDSPVQEFTVP-------GY 62
Query: 129 ETECTISELSPFTTYSVNIR 148
+ TIS L P Y++ +
Sbjct: 63 YSTATISGLKPGVDYTITVY 82
Score = 32.0 bits (73), Expect = 0.35
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 41 PRRTLFLEPTETECTISELSPFTTYSVNIS 70
P + + + TIS L P Y++ +
Sbjct: 53 PVQEFTVPGYYSTATISGLKPGVDYTITVY 82
>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase
receptor HTK, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 109
Score = 48.2 bits (115), Expect = 8e-07
Identities = 13/81 (16%), Positives = 31/81 (38%), Gaps = 13/81 (16%)
Query: 70 SLRAHDVSTHSMTLSWSPPIKLN--PVKYKISLDAVKEFVDSQGITQTQIVPRRTLFLEP 127
+R S S++L+W+ P + + Y++ ++G + + +
Sbjct: 13 DIRVTRSSPSSLSLAWAVPRAPSGAVLDYEVKY----HEKGAEGPSSVRFLK-------T 61
Query: 128 TETECTISELSPFTTYSVNIR 148
+E + L +Y V +R
Sbjct: 62 SENRAELRGLKRGASYLVQVR 82
Score = 28.6 bits (64), Expect = 6.2
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 41 PRRTLFLEPTETECTISELSPFTTYSVNISLRAH 74
P FL+ +E + L +Y V +RA
Sbjct: 53 PSSVRFLKTSENRAELRGLKRGASYLV--QVRAR 84
>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 130
Score = 48.9 bits (117), Expect = 8e-07
Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 12/81 (14%)
Query: 70 SLRAHDVSTHSMTLSWSPPIKLN--PVKYKISLDAVKEFVDSQGITQTQIVPRRTLFLEP 127
+ +V T S+ L W PP N + Y+I+ + + +++ P
Sbjct: 33 GILFPEVRTTSVRLIWQPPAAPNGIILAYQIT---HRLNTTTANTATVEVLA-------P 82
Query: 128 TETECTISELSPFTTYSVNIR 148
+ + T + L P + Y I
Sbjct: 83 SARQYTATGLKPESVYLFRIT 103
>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 111
Score = 48.1 bits (115), Expect = 1e-06
Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 14/81 (17%)
Query: 70 SLRAHDVSTHSMTLSWSPPIKLNPV--KYKISLDAVKEFVDSQGITQTQIVPRRTLFLEP 127
+R S++L W P + N + +Y+I + + + +
Sbjct: 16 VIRQERAGQTSVSLLWQEPEQPNGIILEYEIKY-----YEKDKEMQSYSTLK-------A 63
Query: 128 TETECTISELSPFTTYSVNIR 148
T T+S L P T Y +R
Sbjct: 64 VTTRATVSGLKPGTRYVFQVR 84
Score = 30.4 bits (69), Expect = 1.5
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 47 LEPTETECTISELSPFTTYSVNISLRAH 74
L+ T T+S L P T Y +RA
Sbjct: 61 LKAVTTRATVSGLKPGTRYVF--QVRAR 86
>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein,
adnect antitumor, drug, engineered binding protein; HET:
NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D*
Length = 114
Score = 48.4 bits (115), Expect = 1e-06
Identities = 17/98 (17%), Positives = 30/98 (30%), Gaps = 15/98 (15%)
Query: 71 LRAHDVSTHSMTLSWSPPIKLNPVKYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPTET 130
L + S+ +SW + + Y+I+ Q VP
Sbjct: 10 LEVVAATPTSLLISWDSG-RGSYQYYRITYGET----GGNSPVQEFTVP-------GPVH 57
Query: 131 ECTISELSPFTTYSVNIR---RRQPRKYPESSAVTRPL 165
TIS L P Y++ + +P + P+
Sbjct: 58 TATISGLKPGVDYTITVYAVTDHKPHADGPHTYHESPI 95
Score = 33.3 bits (76), Expect = 0.18
Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
Query: 41 PRRTLFLEPTETECTISELSPFTTYSVNIS-LRAHDVSTHSMTLSWSPPIKLN 92
P + + TIS L P Y++ + + H PI +N
Sbjct: 46 PVQEFTVPGPVHTATISGLKPGVDYTITVYAVTDHKPHADGPHTYHESPISIN 98
>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 114
Score = 48.2 bits (115), Expect = 1e-06
Identities = 14/83 (16%), Positives = 30/83 (36%), Gaps = 11/83 (13%)
Query: 68 NISLRAHDVSTHSMTLSWSPPIKLNPV--KYKISLDAVKEFVDSQGITQTQIVPRRTLFL 125
++++ + ++ +SW PP++ N Y + K I +T +
Sbjct: 14 DLTVITREGKPRAVIVSWQPPLEANGKITAYILFYTLDKNIPIDDWIMET---------I 64
Query: 126 EPTETECTISELSPFTTYSVNIR 148
I +L+ T Y I+
Sbjct: 65 SGDRLTHQIMDLNLDTMYYFRIQ 87
>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 94
Score = 47.0 bits (112), Expect = 2e-06
Identities = 12/78 (15%), Positives = 27/78 (34%), Gaps = 12/78 (15%)
Query: 71 LRAHDVSTHSMTLSWSPPIKLNPVKYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPTET 130
L DV S+ ++W P + +Y++ + + + E
Sbjct: 8 LAFTDVDVDSIKIAWESP-QGQVSRYRV------TYSSPEDGIHELFPA-----PDGEED 55
Query: 131 ECTISELSPFTTYSVNIR 148
+ L P + Y+V++
Sbjct: 56 TAELQGLRPGSEYTVSVV 73
Score = 32.0 bits (73), Expect = 0.33
Identities = 5/30 (16%), Positives = 11/30 (36%)
Query: 41 PRRTLFLEPTETECTISELSPFTTYSVNIS 70
+ E + L P + Y+V++
Sbjct: 44 HELFPAPDGEEDTAELQGLRPGSEYTVSVV 73
>2img_A Dual specificity protein phosphatase 23; DUSP23, VHZ, LDP-3, dual
specicity protein phosphatase 23, DUS23_human, malate,
structural genomics, PSI; 1.93A {Homo sapiens}
Length = 151
Score = 48.5 bits (116), Expect = 2e-06
Identities = 23/85 (27%), Positives = 32/85 (37%), Gaps = 11/85 (12%)
Query: 652 LSTVDG-IPGRDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLER-MQ 709
L D P D F+ V E + + VHC+ G GRTG + +V ER +
Sbjct: 62 LRIPDFCPPAPDQIDRFVQIVD---EANARGEAVGVHCALGFGRTGTMLACYLVKERGLA 118
Query: 710 YEGVIDLFQTVRILRTQRPAMVQTE 734
I R RP ++T
Sbjct: 119 AGDAIAEI------RRLRPGSIETY 137
Score = 47.8 bits (114), Expect = 3e-06
Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 13/73 (17%)
Query: 1572 FIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLER-MQYEGVIDLFQTVRI 1630
F+ + E + + VHC+ G GRTG + +V ER + I
Sbjct: 78 FVQIV------DEANARGEAVGVHCALGFGRTGTMLACYLVKERGLAAGDAIAEI----- 126
Query: 1631 LRTQRPAMVQTEH 1643
R RP ++T
Sbjct: 127 -RRLRPGSIETYE 138
Score = 44.7 bits (106), Expect = 3e-05
Identities = 22/140 (15%), Positives = 41/140 (29%), Gaps = 27/140 (19%)
Query: 346 QDVQELASYCIRTF--MINKG--ADSERREIKQLQFTAWPDHGVP--EHPAPFLLFLRRV 399
Q L +R + +G + + PD P + F+ +
Sbjct: 27 AHYQFLLDLGVRHLVSLTERGPPHSDSCPGLTLHRL-RIPDFCPPAPDQIDRFVQIVDEA 85
Query: 400 RAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTC 459
A + VHC+ G GRTG + +++ D +
Sbjct: 86 NARG---------------EAVGVHCALGFGRTGTMLAC-YLVKERGLA-AGDAIAEI-- 126
Query: 460 LRAQRNYMVQTEDQYMFIHD 479
R R ++T +Q +
Sbjct: 127 -RRLRPGSIETYEQEKAVFQ 145
Score = 44.7 bits (106), Expect = 3e-05
Identities = 22/140 (15%), Positives = 41/140 (29%), Gaps = 27/140 (19%)
Query: 857 QDVQELASYCIRTF--MINKG--ADSERREIKQLQFTAWPDHGVP--EHPAPFLLFLRRV 910
Q L +R + +G + + PD P + F+ +
Sbjct: 27 AHYQFLLDLGVRHLVSLTERGPPHSDSCPGLTLHRL-RIPDFCPPAPDQIDRFVQIVDEA 85
Query: 911 RAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTC 970
A + VHC+ G GRTG + +++ D +
Sbjct: 86 NARG---------------EAVGVHCALGFGRTGTMLAC-YLVKERGLA-AGDAIAEI-- 126
Query: 971 LRAQRNYMVQTEDQYMFIHD 990
R R ++T +Q +
Sbjct: 127 -RRLRPGSIETYEQEKAVFQ 145
Score = 37.0 bits (86), Expect = 0.015
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 1729 GPLIVHCSAGVGRTGCFIVIDAKEQYQFCYHAALEYL 1765
+ VHC+ G GRTG + ++ A+ +
Sbjct: 90 EAVGVHCALGFGRTGTMLACYLVKERGLAAGDAIAEI 126
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding
homology region (CHR), cell MEMB disease mutation,
glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo
sapiens}
Length = 483
Score = 51.4 bits (122), Expect = 2e-06
Identities = 18/128 (14%), Positives = 41/128 (32%), Gaps = 33/128 (25%)
Query: 48 EPTETECTISELSPFTTYSVNI---------------------------SLRAHDVSTHS 80
+ L Y+ + S + D+++ +
Sbjct: 338 TNESYQLLFQMLPNQEIYNFTLNAHNPLGRSQSTILVNITEKVYPHTPTSFKVKDINSTA 397
Query: 81 MTLSWSPPIKLNPVKYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPTETECTISELSPF 140
+ LSW P + + + E S + + + V + + E + + +L+P+
Sbjct: 398 VKLSWHLPGNFAKINFLCEI----EIKKSNSVQEQRNVTIQGV--ENSSYLVALDKLNPY 451
Query: 141 TTYSVNIR 148
T Y+ IR
Sbjct: 452 TLYTFRIR 459
Score = 32.9 bits (74), Expect = 1.0
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 47 LEPTETECTISELSPFTTYSVNISLRAHDVSTHSMTLSWSPPI 89
+E + + +L+P+T Y+ I S WS
Sbjct: 436 VENSSYLVALDKLNPYTLYTFRIRCSTETFWKWS---KWSNKK 475
Score = 32.5 bits (73), Expect = 1.3
Identities = 13/109 (11%), Positives = 29/109 (26%), Gaps = 8/109 (7%)
Query: 71 LRAHDVSTHSMTLSWSPPIKLNPVKYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPTET 130
L + SW+P V + + + E + + +
Sbjct: 288 LNCETHDLKEIICSWNPGRVTALVGPRATSYTLVESFSGKYVRLKRAEA-----PTNESY 342
Query: 131 ECTISELSPFTTYSVNIRRRQPRKYPESSAVTRPLMSGEIMTSHAPSDP 179
+ L Y+ + P +S+ + E + H P+
Sbjct: 343 QLLFQMLPNQEIYNFTLNAHNPLGRSQSTILVNIT---EKVYPHTPTSF 388
>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de
novo; 2.50A {Synthetic}
Length = 98
Score = 46.7 bits (111), Expect = 2e-06
Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 14/80 (17%)
Query: 70 SLRAHDVSTHSMTLSWSPPIKLNPV-KYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPT 128
+L +V+ S+ LSW+ P + I + G VP +
Sbjct: 7 NLVVSEVTEDSLRLSWTAP--DAAFDSFMIQYQES----EKVGEAINLTVP-------GS 53
Query: 129 ETECTISELSPFTTYSVNIR 148
E ++ L P T Y+V+I
Sbjct: 54 ERSYDLTGLKPGTEYTVSIY 73
Score = 30.5 bits (69), Expect = 1.3
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 7/41 (17%)
Query: 30 DSQGITQTQIVPRRTLFLEPTETECTISELSPFTTYSVNIS 70
+ G VP +E ++ L P T Y+V+I
Sbjct: 40 EKVGEAINLTVP-------GSERSYDLTGLKPGTEYTVSIY 73
>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 108
Score = 47.0 bits (112), Expect = 2e-06
Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 15/80 (18%)
Query: 70 SLRAHDVSTHSMTLSWSPPIKLNPV-KYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPT 128
L DVS + + W + PV +++ + G + P
Sbjct: 13 HLGFSDVSHDAARVFWEGAPR--PVRLVRVTYVSS-----EGGHSGQTEAP-------GN 58
Query: 129 ETECTISELSPFTTYSVNIR 148
T + LS TTY+V +
Sbjct: 59 ATSAMLGPLSSSTTYTVRVT 78
Score = 30.5 bits (69), Expect = 1.5
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 42 RRTLFLEPTETECTISELSPFTTYSVNIS 70
T + LS TTY+V ++
Sbjct: 50 SGQTEAPGNATSAMLGPLSSSTTYTVRVT 78
>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol,
hormone-growth complex; HET: CME EST; 2.95A {Homo
sapiens}
Length = 121
Score = 47.6 bits (113), Expect = 2e-06
Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 14/80 (17%)
Query: 70 SLRAHDVSTHSMTLSWSPPIKLNPV-KYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPT 128
L + S+ +SW P V Y+I+ Q VP +
Sbjct: 34 KLEVVAATPTSLLISWDAP--AVTVRYYRITYGET----GGNSPVQEFTVP-------GS 80
Query: 129 ETECTISELSPFTTYSVNIR 148
++ TIS L P Y++ +
Sbjct: 81 KSTATISGLKPGVDYTITVY 100
Score = 33.3 bits (76), Expect = 0.21
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 41 PRRTLFLEPTETECTISELSPFTTYSVNISLRAHDVSTHSMTLSWSPPIKLN 92
P + + +++ TIS L P Y I++ A V+ + L+ S PI +N
Sbjct: 71 PVQEFTVPGSKSTATISGLKPGVDY--TITVYA--VTGLRLMLAGSKPISIN 118
>1rxd_A Protein tyrosine phosphatase type IVA, member 1; protein tyrosine
phosphatase IVA1...; structural genomics, NYSGXRC,
unknown function, PSI; 1.90A {Homo sapiens} SCOP:
c.45.1.1 PDB: 1xm2_A 1zck_A 1r6h_A 1v3a_A
Length = 159
Score = 48.1 bits (114), Expect = 3e-06
Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 8/91 (8%)
Query: 1554 QFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVL 1613
+ + P + +D + K K + I VHC AG+GR V + L+++
Sbjct: 63 HVLDWPFDDGAPPS--NQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALIE 120
Query: 1614 ERMQYEGVIDLFQTVRILRTQRPAMVQTEHL 1644
M+YE + R +R ++ L
Sbjct: 121 GGMKYEDAVQFI------RQKRRGAFNSKQL 145
Score = 46.5 bits (110), Expect = 9e-06
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 652 LSTVDGIPGRDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYE 711
DG P + +D + K K + I VHC AG+GR V + L+++ M+YE
Sbjct: 67 WPFDDGAPPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALIEGGMKYE 126
Query: 712 GVIDLFQTVRILRTQRPAMVQTE 734
+ R +R ++
Sbjct: 127 DAVQFI------RQKRRGAFNSK 143
Score = 39.6 bits (92), Expect = 0.002
Identities = 17/102 (16%), Positives = 36/102 (35%), Gaps = 22/102 (21%)
Query: 380 WPDHGVP--EHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIV 437
+ D P + +L ++ PG + VHC AG+GR +
Sbjct: 69 FDDGAPPSNQIVDDWLSLVKIKFREEPG-------------CCIAVHCVAGLGRAPVLVA 115
Query: 438 IDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHD 479
+ + +K++ V R +R ++ Q +++
Sbjct: 116 LALIEGGMKYEDAVQFI------RQKRRGAFNSK-QLLYLEK 150
Score = 39.6 bits (92), Expect = 0.002
Identities = 17/102 (16%), Positives = 36/102 (35%), Gaps = 22/102 (21%)
Query: 891 WPDHGVP--EHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIV 948
+ D P + +L ++ PG + VHC AG+GR +
Sbjct: 69 FDDGAPPSNQIVDDWLSLVKIKFREEPG-------------CCIAVHCVAGLGRAPVLVA 115
Query: 949 IDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHD 990
+ + +K++ V R +R ++ Q +++
Sbjct: 116 LALIEGGMKYEDAVQFI------RQKRRGAFNSK-QLLYLEK 150
Score = 30.7 bits (69), Expect = 2.2
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 1729 GPLIVHCSAGVGRTGCFIVIDAKEQYQFCYHAALEYLGS 1767
+ VHC AG+GR + + A + Y A++++
Sbjct: 97 CCIAVHCVAGLGRAPVLVAL-ALIEGGMKYEDAVQFIRQ 134
>1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 137
Score = 47.7 bits (113), Expect = 3e-06
Identities = 22/141 (15%), Positives = 39/141 (27%), Gaps = 46/141 (32%)
Query: 70 SLRAHDVSTHSMTLSWSPPIKLN-----------PVKYKISLDAVKEFVDSQGITQTQIV 118
A D+ ++ L+WSPP L Y++ + + + +
Sbjct: 23 KPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISS-----TGKDGKYKSVY 77
Query: 119 PRRTLFLEPTETECTISELSPFTTYSVNIRRRQPRKYPESSAVTRPLMSGEIMTSHAPSD 178
ET T+++L P Y ++ A + PS+
Sbjct: 78 V-------GEETNITLNDLKPAMDYHAKVQ-----------AEYNSIKG-------TPSE 112
Query: 179 PVEMRRLNFQTPGMVSHPPIP 199
F T P P
Sbjct: 113 AEI-----FTTLSCEPDIPNP 128
Score = 29.2 bits (65), Expect = 5.4
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 5/40 (12%)
Query: 50 TETECTISELSPFTTYSVNISLRAHDVSTHSMTLSWSPPI 89
ET T+++L P Y ++A S + S
Sbjct: 80 EETNITLNDLKPAMDYHA--KVQAEYNSIKG---TPSEAE 114
>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 106
Score = 46.9 bits (112), Expect = 3e-06
Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 16/81 (19%)
Query: 70 SLRAHDVSTHSMTLSWSPPIKLN--PVKYKISLDAVKEFVDSQGITQTQIVPRRTLFLEP 127
+L+A S S+ ++W PP N Y++ F + Q +
Sbjct: 13 NLQAVSTSPTSILITWEPPAYANGPVQGYRL-------FCTEVSTGKEQNIE-------V 58
Query: 128 TETECTISELSPFTTYSVNIR 148
+ L FT YS+
Sbjct: 59 DGLSYKLEGLKKFTEYSLRFL 79
>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like
modifier, S NOVO protein; 2.40A {Artificial gene}
Length = 97
Score = 46.2 bits (110), Expect = 3e-06
Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 14/79 (17%)
Query: 71 LRAHDVSTHSMTLSWSPPIKLNPV-KYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPTE 129
L + S+ +SW + V Y+I+ Q VP +
Sbjct: 11 LEVVAATPTSLLISWDAS--SSSVSYYRITYGET----GGNSPVQEFTVP-------GSS 57
Query: 130 TECTISELSPFTTYSVNIR 148
+ TIS LSP Y++ +
Sbjct: 58 STATISGLSPGVDYTITVY 76
Score = 32.4 bits (74), Expect = 0.26
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 41 PRRTLFLEPTETECTISELSPFTTYSVNIS 70
P + + + + TIS LSP Y++ +
Sbjct: 47 PVQEFTVPGSSSTATISGLSPGVDYTITVY 76
>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin
type III domain, alternative cell membrane, disulfide
bond; 1.90A {Homo sapiens} PDB: 3l5j_A
Length = 290
Score = 49.8 bits (119), Expect = 3e-06
Identities = 16/130 (12%), Positives = 29/130 (22%), Gaps = 44/130 (33%)
Query: 50 TETECTISELSPFTTYSVNI---------------------------SLRAHDVSTHSMT 82
L+ Y + + ++R V +
Sbjct: 155 VHRTYLRGNLAESKCYLITVTPVYADGPGSPESIKAYLKQAPPSKGPTVRTKKVGKNEAV 214
Query: 83 LSWSPPIKLNP----VKYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPTETECTISELS 138
L W Y I + ++ + TE T+S L+
Sbjct: 215 LEWDQLPVDVQNGFIRNYTIFYRTI----IGNETAVN---------VDSSHTEYTLSSLT 261
Query: 139 PFTTYSVNIR 148
T Y V +
Sbjct: 262 SDTLYMVRMA 271
Score = 34.4 bits (79), Expect = 0.31
Identities = 10/131 (7%), Positives = 27/131 (20%), Gaps = 42/131 (32%)
Query: 48 EPTETECTISELSPFTTYSVNIS---------------------------LRAHDVSTHS 80
T ++ Y ++ +
Sbjct: 57 NYTVNATKLTVNLTNDRYLATLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKAFPKDNM 116
Query: 81 MTLSWSPPIKLNP---VKYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPTETECTISEL 137
+ + W+ P + +++ + D + IT Q L
Sbjct: 117 LWVEWTTPRESVKKYILEWCVLSD------KAPCITDWQQEDG------TVHRTYLRGNL 164
Query: 138 SPFTTYSVNIR 148
+ Y + +
Sbjct: 165 AESKCYLITVT 175
Score = 30.2 bits (68), Expect = 6.3
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 47 LEPTETECTISELSPFTTYSVNIS 70
++ + TE T+S L+ T Y V ++
Sbjct: 248 VDSSHTEYTLSSLTSDTLYMVRMA 271
>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 116
Score = 46.6 bits (111), Expect = 4e-06
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 16/81 (19%)
Query: 70 SLRAHDVSTHSMTLSWSPPIKLN--PVKYKISLDAVKEFVDSQGITQTQIVPRRTLFLEP 127
+LRA+ S S+T++W P+ N YK+ + +G + Q V
Sbjct: 23 NLRAYAASPTSITVTWETPVSGNGEIQNYKL-------YYMEKGTDKEQDVD-------V 68
Query: 128 TETECTISELSPFTTYSVNIR 148
+ TI+ L +T YS +
Sbjct: 69 SSHSYTINGLKKYTEYSFRVV 89
>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2,
NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 108
Score = 46.3 bits (110), Expect = 4e-06
Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 14/81 (17%)
Query: 70 SLRAHDVSTHSMTLSWSPPIKLNPV--KYKISLDAVKEFVDSQGITQTQIVPRRTLFLEP 127
+ + S+TLSW P + N + Y+I E ++ +
Sbjct: 13 IMHQVSATMRSITLSWPQPEQPNGIILDYEIR---YYEKEHNEFNSSM---------ARS 60
Query: 128 TETECTISELSPFTTYSVNIR 148
I L P Y V +R
Sbjct: 61 QTNTARIDGLRPGMVYVVQVR 81
Score = 29.3 bits (66), Expect = 3.4
Identities = 9/47 (19%), Positives = 13/47 (27%), Gaps = 13/47 (27%)
Query: 47 LEPTETECTISELSPFTTYSVNISLRAHDVSTHSMTL----SWSPPI 89
I L P Y V + RA T+ +S +
Sbjct: 58 ARSQTNTARIDGLRPGMVYVVQV--RAR-------TVAGYGKFSGKM 95
>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK,
fibronectin type III (FN3) domain, structural genomics,
NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1
Length = 107
Score = 46.3 bits (110), Expect = 4e-06
Identities = 15/83 (18%), Positives = 30/83 (36%), Gaps = 19/83 (22%)
Query: 69 ISLRAHDVSTHSMTLSWSPPIKLNP---VKYKISLDAVKEFVDSQGITQTQIVPRRTLFL 125
+SL+ + L+W+ NP + Y++ ++ +
Sbjct: 14 LSLKLVKKEPRQLELTWAGSRPRNPGGNLSYEL------HVLNQDEEWHQMV-------- 59
Query: 126 EPTETECTISELSPFTTYSVNIR 148
E +++L P TTY V +R
Sbjct: 60 --LEPRVLLTKLQPDTTYIVRVR 80
Score = 31.3 bits (71), Expect = 0.64
Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 5/40 (12%)
Query: 50 TETECTISELSPFTTYSVNISLRAHDVSTHSMTLSWSPPI 89
E +++L P TTY V + R +SP
Sbjct: 60 LEPRVLLTKLQPDTTYIVRV--RTLTPLGPG---PFSPDH 94
>3s4o_A Protein tyrosine phosphatase-like protein; structural genomics,
medical structural genomics of pathogen protozoa, MSGPP,
unknown function; HET: MSE EPE; 2.30A {Leishmania major}
Length = 167
Score = 47.7 bits (113), Expect = 4e-06
Identities = 27/151 (17%), Positives = 55/151 (36%), Gaps = 23/151 (15%)
Query: 1511 PSERS-IRYEWFVVEPIAEYNMPQYV--LREFKVTDARDATSRTL-------RQFQLIDW 1560
P + S + + + +++ + N+P Y+ L+ V T R + W
Sbjct: 15 PQKPSRVLFHFLILDAPSPSNLPTYIKELQHRGVRHLVRVCGPTYDATLVKSRGIDVHSW 74
Query: 1561 P-EQGVPKSGDGFIDFIGQVHKT-----KEQFGQDGPITVHCSAGVGRTGVFITLSIV-L 1613
P + G P + ++ + ++ I VHC AG+GR + + L++V
Sbjct: 75 PFDDGAPPTRAVLDSWLKLLDTELARQQEDPSVPPPTIGVHCVAGLGRAPILVALALVEY 134
Query: 1614 ERMQYEGVIDLFQTVRILRTQRPAMVQTEHL 1644
+ I L R +R + +
Sbjct: 135 GNVSALDAIALI------REKRKGAINQTQM 159
Score = 43.0 bits (101), Expect = 2e-04
Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 13/90 (14%)
Query: 652 LSTVDGIPGRDGFID-FIGQVHKT-----KEQFGQDGPITVHCSAGVGRTGVFITLSIV- 704
DG P +D ++ + ++ I VHC AG+GR + + L++V
Sbjct: 74 WPFDDGAPPTRAVLDSWLKLLDTELARQQEDPSVPPPTIGVHCVAGLGRAPILVALALVE 133
Query: 705 LERMQYEGVIDLFQTVRILRTQRPAMVQTE 734
+ I L R +R +
Sbjct: 134 YGNVSALDAIALI------REKRKGAINQT 157
Score = 36.9 bits (85), Expect = 0.021
Identities = 22/114 (19%), Positives = 39/114 (34%), Gaps = 16/114 (14%)
Query: 368 ERREIKQLQFTAWPDHGVP--EHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHC 425
+ R I + + D P +L L A S+ + VHC
Sbjct: 65 KSRGIDVHSW-PFDDGAPPTRAVLDSWLKLLDTELARQQEDPSVPPPTI-------GVHC 116
Query: 426 SAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHD 479
AG+GR + + A++E + +D + R +R + Q +I
Sbjct: 117 VAGLGRAPILVAL-ALVEY-GNVSALDAIALI---REKRKGAINQT-QMHWITK 164
Score = 36.9 bits (85), Expect = 0.021
Identities = 22/114 (19%), Positives = 39/114 (34%), Gaps = 16/114 (14%)
Query: 879 ERREIKQLQFTAWPDHGVP--EHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHC 936
+ R I + + D P +L L A S+ + VHC
Sbjct: 65 KSRGIDVHSW-PFDDGAPPTRAVLDSWLKLLDTELARQQEDPSVPPPTI-------GVHC 116
Query: 937 SAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHD 990
AG+GR + + A++E + +D + R +R + Q +I
Sbjct: 117 VAGLGRAPILVAL-ALVEY-GNVSALDAIALI---REKRKGAINQT-QMHWITK 164
Score = 35.3 bits (81), Expect = 0.067
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 1727 PVGPLIVHCSAGVGRTGCFIVIDAKEQYQFCYHAALEYL 1765
P + VHC AG+GR + + E A+ +
Sbjct: 108 PPPTIGVHCVAGLGRAPILVALALVEYGNVSALDAIALI 146
>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type
III domain containing protein, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 115
Score = 46.2 bits (110), Expect = 5e-06
Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 13/79 (16%)
Query: 70 SLRAHDVSTHSMTLSWSPPIKLNPVKYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPTE 129
+ +A S S+ LSW+PP Y++ + D + + +I
Sbjct: 23 NFKAEPESETSILLSWTPPRSDTIANYEL------VYKDGEHGEEQRITI-------EPG 69
Query: 130 TECTISELSPFTTYSVNIR 148
T + L P + Y +
Sbjct: 70 TSYRLQGLKPNSLYYFRLA 88
>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY
docking, cell adhesion, structural protein; NMR {Homo
sapiens}
Length = 201
Score = 47.7 bits (113), Expect = 7e-06
Identities = 14/82 (17%), Positives = 25/82 (30%), Gaps = 11/82 (13%)
Query: 67 VNISLRAHDVSTHSMTLSWSPPIKLNPVKYKISLDAVKEFVDSQGITQTQIVPRRTLFLE 126
V + + +S + W+ P + KY + +S G + +P
Sbjct: 4 VEVFITETPSQPNSHPIQWNAPQPSHISKYILRWRP----KNSVGRWKEATIP------- 52
Query: 127 PTETECTISELSPFTTYSVNIR 148
TI L P Y +
Sbjct: 53 GHLNSYTIKGLKPGVVYEGQLI 74
Score = 46.2 bits (109), Expect = 3e-05
Identities = 24/140 (17%), Positives = 45/140 (32%), Gaps = 21/140 (15%)
Query: 29 VDSQGITQTQIVPRRTLFLEPTETECTISELSPFTTYSVNISLRAHDVSTHSMTLSWSPP 88
+ G + T T T++ + + V S +++ S +SW
Sbjct: 76 IQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVATSESVTEITASSFVVSWVSA 135
Query: 89 ---IKLNPVKYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPTETECTISELSPFTTYSV 145
+ V+Y++S + Q +P T T I +L P Y V
Sbjct: 136 SDTVSGFRVEYELS--------EEGDEPQYLDLP-------STATSVNIPDLLPGRKYIV 180
Query: 146 NIR---RRQPRKYPESSAVT 162
N+ + S++ T
Sbjct: 181 NVYQISEDGEQSLILSTSQT 200
>3f41_A Phytase; tandem repeat, protein tyrosine phosphatase, inositol
phosphatase, hydrolase; 2.30A {Mitsuokella multacida}
Length = 629
Score = 49.8 bits (118), Expect = 7e-06
Identities = 21/111 (18%), Positives = 35/111 (31%), Gaps = 19/111 (17%)
Query: 367 SERREIKQLQFT----AWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLI 422
+E++ +++ A DH P A F+ R M L
Sbjct: 489 TEQQLVEKNGLHYYRIAATDHIWPS-AANIDEFINFTRTMPANA-------------WLH 534
Query: 423 VHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQ 473
HC AG GRT ++ + M+ + DI L + +
Sbjct: 535 FHCQAGAGRTTAYMAMYDMM-KNPDVSLGDILSRQYLLGGNYVAYEIAKPK 584
Score = 49.8 bits (118), Expect = 7e-06
Identities = 21/111 (18%), Positives = 35/111 (31%), Gaps = 19/111 (17%)
Query: 878 SERREIKQLQFT----AWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLI 933
+E++ +++ A DH P A F+ R M L
Sbjct: 489 TEQQLVEKNGLHYYRIAATDHIWPS-AANIDEFINFTRTMPANA-------------WLH 534
Query: 934 VHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQ 984
HC AG GRT ++ + M+ + DI L + +
Sbjct: 535 FHCQAGAGRTTAYMAMYDMM-KNPDVSLGDILSRQYLLGGNYVAYEIAKPK 584
Score = 47.1 bits (111), Expect = 5e-05
Identities = 21/112 (18%), Positives = 37/112 (33%), Gaps = 18/112 (16%)
Query: 367 SERREIKQLQFT----AWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLI 422
+E +KQ DH P+ FL +++ L
Sbjct: 191 TEEEMVKQHGANYFRLTLQDHFRPD-DPDVDKFLEFYKSLPKDA-------------WLH 236
Query: 423 VHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQY 474
HC AG+GRT F+V+ +++ K DI + + + +
Sbjct: 237 YHCYAGMGRTTIFMVMHDILKNAKDVSFDDIIQRQKLIGIVDLSEIPDKKKN 288
Score = 47.1 bits (111), Expect = 5e-05
Identities = 21/112 (18%), Positives = 37/112 (33%), Gaps = 18/112 (16%)
Query: 878 SERREIKQLQFT----AWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLI 933
+E +KQ DH P+ FL +++ L
Sbjct: 191 TEEEMVKQHGANYFRLTLQDHFRPD-DPDVDKFLEFYKSLPKDA-------------WLH 236
Query: 934 VHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQY 985
HC AG+GRT F+V+ +++ K DI + + + +
Sbjct: 237 YHCYAGMGRTTIFMVMHDILKNAKDVSFDDIIQRQKLIGIVDLSEIPDKKKN 288
Score = 42.9 bits (100), Expect = 0.001
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 9/60 (15%)
Query: 1560 WPEQGVPKSG--DGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQ 1617
+ P D F++F + K D + HC AG+GRT +F+ + +L+ +
Sbjct: 208 LQDHFRPDDPDVDKFLEFYKSLPK-------DAWLHYHCYAGMGRTTIFMVMHDILKNAK 260
Score = 40.6 bits (94), Expect = 0.005
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 662 DGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQ 709
D F++F + K D + HC AG+GRT +F+ + +L+ +
Sbjct: 220 DKFLEFYKSLPK-------DAWLHYHCYAGMGRTTIFMVMHDILKNAK 260
Score = 39.4 bits (91), Expect = 0.013
Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 13/72 (18%)
Query: 638 RYANVIAYDHSRVILSTVDGIPGRDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGV 697
Y + A DH P +FI + + HC AG GRT
Sbjct: 500 HYYRIAATDHIW---------PSAANIDEFINFTRTMPA----NAWLHFHCQAGAGRTTA 546
Query: 698 FITLSIVLERMQ 709
++ + +++
Sbjct: 547 YMAMYDMMKNPD 558
Score = 39.4 bits (91), Expect = 0.013
Identities = 14/80 (17%), Positives = 28/80 (35%), Gaps = 9/80 (11%)
Query: 1540 KVTDARDATSRTLRQFQLIDWPEQGVPKSG--DGFIDFIGQVHKTKEQFGQDGPITVHCS 1597
V + + + I + P + D FI+F + + HC
Sbjct: 486 SVMTEQQLVEKNGLHYYRIAATDHIWPSAANIDEFINFT-------RTMPANAWLHFHCQ 538
Query: 1598 AGVGRTGVFITLSIVLERMQ 1617
AG GRT ++ + +++
Sbjct: 539 AGAGRTTAYMAMYDMMKNPD 558
Score = 36.7 bits (84), Expect = 0.079
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 1729 GPLIVHCSAGVGRTGCFIVI 1748
L HC AG+GRT F+V+
Sbjct: 233 AWLHYHCYAGMGRTTIFMVM 252
Score = 36.7 bits (84), Expect = 0.082
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 1725 NLPVGP-LIVHCSAGVGRTGCFIVI-DAKEQYQFCYHAALE 1763
+P L HC AG GRT ++ + D + L
Sbjct: 526 TMPANAWLHFHCQAGAGRTTAYMAMYDMMKNPDVSLGDILS 566
>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 119
Score = 45.9 bits (109), Expect = 8e-06
Identities = 13/81 (16%), Positives = 27/81 (33%), Gaps = 13/81 (16%)
Query: 70 SLRAHDVSTHSMTLSWSPPIKLN-PV-KYKISLDAVKEFVDSQGITQTQIVPRRTLFLEP 127
+ VS+ + LSW PP + + + + F + + + P
Sbjct: 23 DVVPVLVSSRFVRLSWRPPAEAKGNIQTFTV------FFSREGDNRERALNTTQ-----P 71
Query: 128 TETECTISELSPFTTYSVNIR 148
+ T+ L P Y+ +
Sbjct: 72 GSLQLTVGNLKPEAMYTFRVV 92
>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 126
Score = 45.9 bits (109), Expect = 1e-05
Identities = 20/81 (24%), Positives = 30/81 (37%), Gaps = 16/81 (19%)
Query: 70 SLRAHDVSTHSMTLSWSPPIKLNPV--KYKISLDAVKEFVDSQGITQTQIVPRRTLFLEP 127
SL + T S+ +SW+PP N V Y I + QT V
Sbjct: 33 SLHVRPLVT-SIVVSWTPPENQNIVVRGYAI------GYGIGSPHAQTIKVD-------Y 78
Query: 128 TETECTISELSPFTTYSVNIR 148
+ TI L P + Y + ++
Sbjct: 79 KQRYYTIENLDPSSHYVITLK 99
Score = 30.9 bits (70), Expect = 1.3
Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 41 PRRTLFLEPTETECTISELSPFTTYSVNISLRAH 74
+T+ ++ + TI L P + Y I+L+A
Sbjct: 70 HAQTIKVDYKQRYYTIENLDPSSHYV--ITLKAF 101
>2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 112
Score = 45.4 bits (107), Expect = 1e-05
Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 10/82 (12%)
Query: 70 SLRAHDVSTHSMTLSWSPPIKLNP---VKYKISLDAVKEFVDSQGITQTQIVPRRTLFLE 126
L DV+T S+ L+W P +++ + + E + + +VP
Sbjct: 14 QLSVTDVTTSSLRLNWEAPPGAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVP------- 66
Query: 127 PTETECTISELSPFTTYSVNIR 148
T + +L T YS+ +
Sbjct: 67 GTRHSAVLRDLRSGTLYSLTLY 88
Score = 28.8 bits (64), Expect = 6.8
Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 5/64 (7%)
Query: 30 DSQGITQTQIVPRRTLFLEPTETECTISELSPFTTYSVNIS-----LRAHDVSTHSMTLS 84
S + + +R L + T + +L T YS+ + +A + + TLS
Sbjct: 48 PSTLEPHPRPLLQRELMVPGTRHSAVLRDLRSGTLYSLTLYGLRGPHKADSIQGTARTLS 107
Query: 85 WSPP 88
Sbjct: 108 GPSS 111
>3rz2_A Protein tyrosine phosphatase type IVA 1; tyrosine phosphatase, dual
specific phosphatase, COMP with peptide, hydrolase; 2.80A
{Rattus norvegicus} PDB: 1x24_A 1zcl_A
Length = 189
Score = 46.6 bits (110), Expect = 1e-05
Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 8/87 (9%)
Query: 1558 IDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQ 1617
+ + P + +D + K K + I VHC AG+GR V + L+++ M+
Sbjct: 88 WPFDDGAPPS--NQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALIEGGMK 145
Query: 1618 YEGVIDLFQTVRILRTQRPAMVQTEHL 1644
YE + R +R ++ L
Sbjct: 146 YEDAVQFI------RQKRRGAFNSKQL 166
Score = 46.6 bits (110), Expect = 1e-05
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 652 LSTVDGIPGRDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYE 711
DG P + +D + K K + I VHC AG+GR V + L+++ M+YE
Sbjct: 88 WPFDDGAPPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALIEGGMKYE 147
Query: 712 GVIDLFQTVRILRTQRPAMVQTE 734
+ R +R ++
Sbjct: 148 DAVQFI------RQKRRGAFNSK 164
Score = 38.5 bits (89), Expect = 0.009
Identities = 20/114 (17%), Positives = 41/114 (35%), Gaps = 23/114 (20%)
Query: 368 ERREIKQLQFTAWPDHGVP--EHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHC 425
E+ I L + + D P + +L ++ PG + VHC
Sbjct: 79 EKEGIHVLDWP-FDDGAPPSNQIVDDWLSLVKIKFREEPG-------------CCIAVHC 124
Query: 426 SAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHD 479
AG+GR + + + +K++ V R +R ++ Q +++
Sbjct: 125 VAGLGRAPVLVALALIEGGMKYEDAVQFI------RQKRRGAFNSK-QLLYLEK 171
Score = 38.5 bits (89), Expect = 0.009
Identities = 20/114 (17%), Positives = 41/114 (35%), Gaps = 23/114 (20%)
Query: 879 ERREIKQLQFTAWPDHGVP--EHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHC 936
E+ I L + + D P + +L ++ PG + VHC
Sbjct: 79 EKEGIHVLDWP-FDDGAPPSNQIVDDWLSLVKIKFREEPG-------------CCIAVHC 124
Query: 937 SAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHD 990
AG+GR + + + +K++ V R +R ++ Q +++
Sbjct: 125 VAGLGRAPVLVALALIEGGMKYEDAVQFI------RQKRRGAFNSK-QLLYLEK 171
Score = 30.1 bits (67), Expect = 4.2
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 1727 PVGPLIVHCSAGVGRTGCFIVIDAKEQYQFCYHAALEYLGS 1767
P + VHC AG+GR + + E Y A++++
Sbjct: 116 PGCCIAVHCVAGLGRAPVLVALALIE-GGMKYEDAVQFIRQ 155
>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding;
2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
PDB: 2ibb_A
Length = 214
Score = 46.7 bits (111), Expect = 2e-05
Identities = 17/143 (11%), Positives = 31/143 (21%), Gaps = 46/143 (32%)
Query: 42 RRTLFLEPTETECTISELSPFTTYS-----VNI--------------------------- 69
+ ++++L P TY V
Sbjct: 60 PKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVP 119
Query: 70 -SLRAHDVSTHSMTLSWSPPIKLN--PVK-YKISLDAVKEFVDSQGITQTQIVPRRTLFL 125
L + S ++ L WS + + Y S G +
Sbjct: 120 ELLEIEEYSETAVVLHWSLASDADEHLITGYYAY----YRPSSSAGEYFKATIEG----- 170
Query: 126 EPTETECTISELSPFTTYSVNIR 148
I+ L T Y ++
Sbjct: 171 -AHARSFKIAPLETATMYEFKLQ 192
Score = 43.6 bits (103), Expect = 2e-04
Identities = 19/132 (14%), Positives = 31/132 (23%), Gaps = 25/132 (18%)
Query: 71 LRAHDVSTHSMTLSWSPPIKLN--PVKYKISLDAVKEFVDSQGITQTQIVP---RRTLFL 125
+S S+ L W P V +K+ T +P +
Sbjct: 8 PNVTRLSDESVMLRWMVPRNDGLPIVIFKV--QYRMVGKRKNWQTTNDNIPYGKPKWNSE 65
Query: 126 EPTETECTISELSPFTTYSVNIRRRQPRKYPESSAVTRPLMSGEIMTSHAPSDPVEMRRL 185
++++L P TY I AV + S+ L
Sbjct: 66 LGKSFTASVTDLKPQHTYRFRIL-----------AVY------SNNDN-KESNTSAKFYL 107
Query: 186 NFQTPGMVSHPP 197
P
Sbjct: 108 QPGAALDPMPVP 119
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 48.4 bits (114), Expect = 2e-05
Identities = 35/262 (13%), Positives = 79/262 (30%), Gaps = 47/262 (17%)
Query: 50 TETECTISELSPFTTYS-----VN-------------------------------ISLRA 73
T+ ++++ P Y VN +
Sbjct: 221 TDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPSAPPAPANLRLANSTV 280
Query: 74 HDVSTHSMTLSWSPPIKLN-PV-KYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPTETE 131
+ + ++T+ W P + + PV YK+ V S+ + T+ R+T + +
Sbjct: 281 NSDGSVTVTIVWDLPEEPDIPVHHYKVFW---SWMVSSKSLVPTKKKRRKTT--DGFQNS 335
Query: 132 CTISELSPFTTYSVNIR--RRQPRKYPESSAVTRPLMSGEIMTSHAPSDPVEMRRLNFQT 189
+ +L P Y V ++ + +S+ V+ S + + Q
Sbjct: 336 VILEKLQPDCDYVVELQAITYWGQTRLKSAKVSLHFTSTHATNNKEQLVKTRKGGIQTQL 395
Query: 190 PGMVSHPPIPISRLAQHIENLKANDNLKFSQEYESIEPGQQFTWDHSSMEMNKAKNRYAN 249
P P P+ A ++ + + + + + W + N+ A+
Sbjct: 396 PFQRRRPTRPLEVGAPFYQDGQLQVKVYWKKTEDPTVNRYHVRWFPEACAHNRTTGSEAS 455
Query: 250 VIAYDHSRVILSTVDGIPGSDY 271
+ +IL + Y
Sbjct: 456 SGMTHENYIILQDLS--FSCKY 475
Score = 42.6 bits (99), Expect = 0.001
Identities = 12/80 (15%), Positives = 28/80 (35%), Gaps = 7/80 (8%)
Query: 71 LRAHDVSTHSMTLSWSPPIKLN--PVKYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPT 128
LR ++ + + + WS ++ PV Y + S+ +T T
Sbjct: 167 LRFTELQSGQLEVKWSSKFNISIEPVIYVVQRRWNYGIHPSEDDATHWQTVAQT-----T 221
Query: 129 ETECTISELSPFTTYSVNIR 148
+ ++++ P Y +
Sbjct: 222 DERVQLTDIRPSRWYQFRVA 241
Score = 42.3 bits (98), Expect = 0.001
Identities = 13/163 (7%), Positives = 41/163 (25%), Gaps = 7/163 (4%)
Query: 35 TQTQIVPRRTLFLEPTETECTISELSPFTTYSVNISLRAHDVSTHSMTLSWSPPIKLNPV 94
T + + + + T + + + + + W
Sbjct: 374 THATNNKEQLVKTRKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVYWKKTEDPTVN 433
Query: 95 KYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPTETECTISELSPFTTYSVNIRRRQPRK 154
+Y + + + E + +LS Y V ++ +P+
Sbjct: 434 RYHVR-------WFPEACAHNRTTGSEASSGMTHENYIILQDLSFSCKYKVTVQPIRPKS 486
Query: 155 YPESSAVTRPLMSGEIMTSHAPSDPVEMRRLNFQTPGMVSHPP 197
+ ++ AV + + + +++ P
Sbjct: 487 HSKAEAVFFTTPPCSALKGKSHKPIGCLGEAGHVLSKVLAKPE 529
Score = 41.5 bits (96), Expect = 0.003
Identities = 17/137 (12%), Positives = 33/137 (24%), Gaps = 20/137 (14%)
Query: 70 SLRAHDVSTHSMTLSWSPPIKLNP---VKYKISLDAVKEFVDSQGITQTQIVPRRTLFLE 126
+ + SW ++++ V + + I ++ L
Sbjct: 533 ASFIVQDVNITGHFSWKMAKANLYQPMTGFQVTWAEVTTESRQNSLPNSII--SQSQILP 590
Query: 127 PTETECTISELSPFTTYSVNIRRRQPRKYPESSAVTR----PLMSGEIMTSHAPSDPVEM 182
T+ L P T Y + ++ +T P T P
Sbjct: 591 SDHYVLTVPNLRPSTLYRLEVQ-----------VLTPGGEGPATIKTFRTPELPPSSAHR 639
Query: 183 RRLNFQTPGMVSHPPIP 199
L + P P
Sbjct: 640 SHLKHRHPHHYKPSPER 656
>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91,
TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 110
Score = 43.6 bits (103), Expect = 3e-05
Identities = 19/82 (23%), Positives = 29/82 (35%), Gaps = 15/82 (18%)
Query: 69 ISLRAHDVSTHSMTLSWSPPIKLN-PV-KYKISLDAVKEFVDSQGITQTQIVPRRTLFLE 126
+ L +S TLSW P P Y + E D G ++
Sbjct: 15 LQLEECCTHNNSATLSWKQPPLSTVPADGYIL------ELDDGNGGQFREVYV------- 61
Query: 127 PTETECTISELSPFTTYSVNIR 148
ET CT+ L +TY+ ++
Sbjct: 62 GKETMCTVDGLHFNSTYNARVK 83
Score = 29.0 bits (65), Expect = 4.7
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 50 TETECTISELSPFTTYSV 67
ET CT+ L +TY+
Sbjct: 63 KETMCTVDGLHFNSTYNA 80
>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold,
fibronectin type III, NG-CAM related cell adhesion
molecule, structural genomics; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 125
Score = 44.3 bits (105), Expect = 3e-05
Identities = 15/82 (18%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
Query: 71 LRAHDVSTHSMTLSWSPPIKLNP----VKYKISLDAVKEFVDSQGITQTQIVPRRTLFLE 126
+R + V++ + W P + Y+I S + + ++ L +
Sbjct: 21 VRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYY----WKTQSSSKRNRRHIEKKILTFQ 76
Query: 127 PTETECTISELSPFTTYSVNIR 148
++T + L PF+ Y++N+R
Sbjct: 77 GSKTHGMLPGLEPFSHYTLNVR 98
Score = 31.2 bits (71), Expect = 0.91
Identities = 8/42 (19%), Positives = 20/42 (47%)
Query: 29 VDSQGITQTQIVPRRTLFLEPTETECTISELSPFTTYSVNIS 70
S + + ++ L + ++T + L PF+ Y++N+
Sbjct: 57 TQSSSKRNRRHIEKKILTFQGSKTHGMLPGLEPFSHYTLNVR 98
>2dle_A Receptor-type tyrosine-protein phosphatase ETA; protein-tyrosine
phosphatase ETA, R-PTP-ETA, HPTP ETA, protein-tyrosine
phosphatase receptor type J; NMR {Homo sapiens}
Length = 104
Score = 43.5 bits (102), Expect = 4e-05
Identities = 19/101 (18%), Positives = 32/101 (31%), Gaps = 17/101 (16%)
Query: 71 LRAHDVSTHSMTLSWSPPIKLNPVKYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPTET 130
+ A ++S S+TL W + Y + G T + + +E
Sbjct: 14 VTAVNISATSLTLIWKVSDNESSSNYTYK-------IHVAGETDSSNLNV-------SEP 59
Query: 131 ECTISELSPFTTYSVNIR--RRQPRKYPES-SAVTRPLMSG 168
I L T Y++ + P T P+ SG
Sbjct: 60 RAVIPGLRSSTFYNITVCPVLGDIEGTPGFLQVHTPPVPSG 100
>3mmj_A MYO-inositol hexaphosphate phosphohydrolase; phytase, protein
tyrosine phosphatase, inositol phosphate, I phosphatase;
HET: IHP; 1.60A {Selenomonas ruminantium} PDB: 1u24_A
1u25_A* 1u26_A* 3o3l_A* 3moz_A* 2pt0_A 2psz_A 3d1h_A
3d1o_A 3d1q_A 2b4u_A 2b4p_A 2b4o_A
Length = 314
Score = 46.7 bits (110), Expect = 4e-05
Identities = 19/66 (28%), Positives = 24/66 (36%), Gaps = 14/66 (21%)
Query: 379 AWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVI 438
A DH P P FL R + L H AGVGRT F+V+
Sbjct: 188 AATDHVWPT-PENIDRFLAFYRTLPQDA-------------WLHFHSEAGVGRTTAFMVM 233
Query: 439 DAMIER 444
M++
Sbjct: 234 TDMLKN 239
Score = 46.7 bits (110), Expect = 4e-05
Identities = 19/66 (28%), Positives = 24/66 (36%), Gaps = 14/66 (21%)
Query: 890 AWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVI 949
A DH P P FL R + L H AGVGRT F+V+
Sbjct: 188 AATDHVWPT-PENIDRFLAFYRTLPQDA-------------WLHFHSEAGVGRTTAFMVM 233
Query: 950 DAMIER 955
M++
Sbjct: 234 TDMLKN 239
Score = 43.2 bits (101), Expect = 6e-04
Identities = 22/109 (20%), Positives = 43/109 (39%), Gaps = 11/109 (10%)
Query: 1514 RSIRYEWFVVEPIAEYNMPQY--VLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSG-- 1569
+ ++ + P+ ++ +P+ V R KV ++ ++ I + P
Sbjct: 141 HAALHKTVYIAPLGKHKLPEGGEVRRVQKVQTEQEVAEAAGMRYFRIAATDHVWPTPENI 200
Query: 1570 DGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQY 1618
D F+ F QD + H AGVGRT F+ ++ +L+
Sbjct: 201 DRFLAFY-------RTLPQDAWLHFHSEAGVGRTTAFMVMTDMLKNPSV 242
Score = 39.7 bits (92), Expect = 0.007
Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 13/73 (17%)
Query: 638 RYANVIAYDHSRVILSTVDGIPGRDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGV 697
RY + A DH +D F+ F QD + H AGVGRT
Sbjct: 183 RYFRIAATDHVWPTPENIDR------FLAFY-------RTLPQDAWLHFHSEAGVGRTTA 229
Query: 698 FITLSIVLERMQY 710
F+ ++ +L+
Sbjct: 230 FMVMTDMLKNPSV 242
Score = 34.7 bits (79), Expect = 0.26
Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 1729 GPLIVHCSAGVGRTGCFIVI-DAKEQYQFCYHAALE 1763
L H AGVGRT F+V+ D + L
Sbjct: 214 AWLHFHSEAGVGRTTAFMVMTDMLKNPSVSLKDILY 249
>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine
phosphatase delta, R-PTP-delta, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 121
Score = 43.9 bits (104), Expect = 4e-05
Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 12/81 (14%)
Query: 70 SLRAHDVSTHSMTLSWSPPIKLNPV--KYKISLDAVKEFVDSQGITQTQIVPRRTLFLEP 127
++A +S+ ++ + W P + N Y++ + +
Sbjct: 24 DVQARMLSSTTILVQWKEPEEPNGQIQGYRVYYTMDPTQHVNNWMKHN----------VA 73
Query: 128 TETECTISELSPFTTYSVNIR 148
TI L P TYSV +
Sbjct: 74 DSQITTIGNLVPQKTYSVKVL 94
>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 116
Score = 43.6 bits (103), Expect = 5e-05
Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 16/81 (19%)
Query: 70 SLRAHDVSTHSMTLSWSPPIKLNPV--KYKISLDAVKEFVDSQGITQTQIVPRRTLFLEP 127
SL + + +SW+PP+ N V Y I + +T V
Sbjct: 23 SLHVRPQTN-CIIMSWTPPLNPNIVVRGYII------GYGVGSPYAETVRVD-------S 68
Query: 128 TETECTISELSPFTTYSVNIR 148
+ +I L + Y ++++
Sbjct: 69 KQRYYSIERLESSSHYVISLK 89
Score = 30.1 bits (68), Expect = 2.0
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 41 PRRTLFLEPTETECTISELSPFTTYSVNISLRA 73
T+ ++ + +I L + Y ISL+A
Sbjct: 60 YAETVRVDSKQRYYSIERLESSSHYV--ISLKA 90
>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 103
Score = 43.1 bits (102), Expect = 5e-05
Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 18/83 (21%)
Query: 70 SLRAHDVSTHSMTLSWSPPIKLNP----VKYKISLDAVKEFVDSQGITQTQIVPRRTLFL 125
+L ++T + L+W PP+ + Y + F D + Q +
Sbjct: 14 NLHVTGLTTSTTELAWDPPVLAERNGRIISYTVV------FRDINSQQELQNIT------ 61
Query: 126 EPTETECTISELSPFTTYSVNIR 148
T+T T++ L P TTY + +R
Sbjct: 62 --TDTRFTLTGLKPDTTYDIKVR 82
Score = 28.4 bits (64), Expect = 7.7
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 50 TETECTISELSPFTTYSVNI 69
T+T T++ L P TTY + +
Sbjct: 62 TDTRFTLTGLKPDTTYDIKV 81
>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 118
Score = 43.6 bits (103), Expect = 5e-05
Identities = 14/80 (17%), Positives = 30/80 (37%), Gaps = 12/80 (15%)
Query: 70 SLRAHDVSTHSMTLSWSPPIKLNPVK-YKISLDAVKEFVDSQGITQTQIVPRRTLFLEPT 128
L + S+ +SW P P++ Y + + ++ + + I P
Sbjct: 23 RLVFSALGPTSLRVSWQEPRCERPLQGYSVE----YQLLNGGELHRLNIPN-------PA 71
Query: 129 ETECTISELSPFTTYSVNIR 148
+T + +L P +Y +R
Sbjct: 72 QTSVVVEDLLPNHSYVFRVR 91
>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 113
Score = 43.3 bits (102), Expect = 6e-05
Identities = 10/85 (11%), Positives = 27/85 (31%), Gaps = 18/85 (21%)
Query: 70 SLRAHDVSTHSMTLSWSPP------IKLNPVKYKISLDAVKEFVDSQGITQTQIVPRRTL 123
++A +S ++ ++W+ + Y + K + + +
Sbjct: 14 GVQASILSHDTIRITWADNSLPKHQKITDSRYYTVR---WKTNIPANT---------KYK 61
Query: 124 FLEPTETECTISELSPFTTYSVNIR 148
T ++ L P T Y ++
Sbjct: 62 NANATTLSYLVTGLKPNTLYEFSVM 86
Score = 33.7 bits (77), Expect = 0.13
Identities = 8/48 (16%), Positives = 14/48 (29%), Gaps = 5/48 (10%)
Query: 42 RRTLFLEPTETECTISELSPFTTYSVNISLRAHDVSTHSMTLSWSPPI 89
+ T ++ L P T Y ++ S +WS
Sbjct: 58 TKYKNANATTLSYLVTGLKPNTLYEFSV--MVTKGRRSS---TWSMTA 100
>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 123
Score = 43.3 bits (102), Expect = 7e-05
Identities = 11/85 (12%), Positives = 27/85 (31%), Gaps = 18/85 (21%)
Query: 70 SLRAHDVSTHSMTLSWSPPIKLNPVK------YKISLDAVKEFVDSQGITQTQIVPRRTL 123
++A ++ ++ +SW+ K Y + + + +
Sbjct: 24 GVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVR---WRTSFSASA---------KYK 71
Query: 124 FLEPTETECTISELSPFTTYSVNIR 148
+ T T + L P T Y ++
Sbjct: 72 SEDTTSLSYTATGLKPNTMYEFSVM 96
Score = 33.7 bits (77), Expect = 0.14
Identities = 10/47 (21%), Positives = 15/47 (31%), Gaps = 5/47 (10%)
Query: 43 RTLFLEPTETECTISELSPFTTYSVNISLRAHDVSTHSMTLSWSPPI 89
+ + T T + L P T Y S+ S +WS
Sbjct: 69 KYKSEDTTSLSYTATGLKPNTMYE--FSVMVTKNRRSS---TWSMTA 110
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 46.3 bits (110), Expect = 7e-05
Identities = 21/130 (16%), Positives = 32/130 (24%), Gaps = 41/130 (31%)
Query: 49 PTETECTISELSPFTTYS-----VNI-----------------------SLRAHDVSTHS 80
+T ++ L P TTY VN S+ S S
Sbjct: 249 GVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPPSIHGQPSSGKS 308
Query: 81 MTLSWSPPIKLN-PVK-YKISLDAVKEFVDSQGITQTQIVPRRTLFLEPTETECTISELS 138
LS + P+ Y + D + + V + + L
Sbjct: 309 FKLSITKQDDGGAPILEYIVK----YRSKDKEDQWLEKKVQ-------GNKDHIILEHLQ 357
Query: 139 PFTTYSVNIR 148
Y V I
Sbjct: 358 WTMGYEVQIT 367
Score = 37.5 bits (87), Expect = 0.042
Identities = 11/82 (13%), Positives = 30/82 (36%), Gaps = 15/82 (18%)
Query: 70 SLRAHDVSTHSMTLSWSPPIKLN--PV-KYKISLDAVKEFVDSQGITQTQIVPRRTLFLE 126
++ ++S + +S++ P P+ Y++ + + +
Sbjct: 201 GVKIIELSQTTAKVSFNKPDSHGGVPIHHYQV------DVKEVASEIWKIVRS------H 248
Query: 127 PTETECTISELSPFTTYSVNIR 148
+T ++ L P TTY + +
Sbjct: 249 GVQTMVVLNNLEPNTTYEIRVA 270
>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII
domain, dscaml1 protein, structural genomics; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 122
Score = 43.1 bits (102), Expect = 8e-05
Identities = 13/82 (15%), Positives = 24/82 (29%), Gaps = 11/82 (13%)
Query: 71 LRAHDVSTHSMTLSWSPPIKLNP----VKYKISLDAVKEFVDSQGITQTQIVPRRTLFLE 126
+ V++ S+ ++W P K Y+I + Q
Sbjct: 22 VTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMKAT------- 74
Query: 127 PTETECTISELSPFTTYSVNIR 148
T+ L F Y V ++
Sbjct: 75 GDSEVYTLDNLKKFAQYGVVVQ 96
>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 132
Score = 43.1 bits (102), Expect = 8e-05
Identities = 20/139 (14%), Positives = 36/139 (25%), Gaps = 47/139 (33%)
Query: 70 SLRAHDVSTHSMTLSWSPPIKLNP----VKYKISLDAVKEFVDSQGITQTQIVPRRTLFL 125
+L ++ S+ + W PP YKI + +V
Sbjct: 24 NLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKA----SRKSDVTETLVS------ 73
Query: 126 EPTETECTISELSPFTTYSVNIRRRQPRKYPESSAVTR----PLMSGEIMTSHAPSDPVE 181
T+ I L T Y+ + A+T P +D +
Sbjct: 74 -GTQLSQLIEGLDRGTEYNFRVA-----------ALTINGTGP-----------ATDWL- 109
Query: 182 MRRLNFQTPGMV-SHPPIP 199
+ +T +P
Sbjct: 110 ----SAETFESDLDETRVP 124
>2c46_A MRNA capping enzyme; phosphatase, transferase, hydrolase, mRNA
processing, multifunctional enzyme,
nucleotidyltransferase; 1.6A {Homo sapiens} PDB: 1i9s_A
1i9t_A
Length = 241
Score = 45.1 bits (106), Expect = 9e-05
Identities = 23/113 (20%), Positives = 37/113 (32%), Gaps = 15/113 (13%)
Query: 1558 IDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQ 1617
+ G + + FI + E+ I VHC+ G RTG I +
Sbjct: 111 LQCKGHGECPTTENTETFIRLCERFNER-NPPELIGVHCTHGFNRTGFLIC-----AFLV 164
Query: 1618 YEGVIDLFQTVRILRTQRPAMVQTEHLYTSSPFSEQLA---LDMREVPPGPPL 1667
+ + V RP + + ++L D+ E PP P L
Sbjct: 165 EKMDWSIEAAVATFAQARPPGIYKGD------YLKELFRRYGDIEEAPPPPLL 211
Score = 42.4 bits (99), Expect = 6e-04
Identities = 22/125 (17%), Positives = 38/125 (30%), Gaps = 19/125 (15%)
Query: 615 ESIEPGQQFTWDHSSMEMNKAKNRYANVI-------AYDHSRVILSTVD----------G 657
+ +F S + K + ++ YD + + +
Sbjct: 59 SQVAEENRFHPSMLSNYLKSLKVKMGLLVDLTNTSRFYDRNDIEKEGIKYIKLQCKGHGE 118
Query: 658 IPGRDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLE-RMQYEGVIDL 716
P + FI + E+ I VHC+ G RTG I +V + E +
Sbjct: 119 CPTTENTETFIRLCERFNER-NPPELIGVHCTHGFNRTGFLICAFLVEKMDWSIEAAVAT 177
Query: 717 FQTVR 721
F R
Sbjct: 178 FAQAR 182
Score = 39.3 bits (91), Expect = 0.007
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 1727 PVGPLIVHCSAGVGRTGCFIVIDAKEQYQFCYHAALEYLGS 1767
P + VHC+ G RTG I E+ + AA+
Sbjct: 140 PPELIGVHCTHGFNRTGFLICAFLVEKMDWSIEAAVATFAQ 180
Score = 35.9 bits (82), Expect = 0.076
Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 11/70 (15%)
Query: 368 ERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSA 427
E+ IK ++ HG F+R N P + VHC+
Sbjct: 102 EKEGIKYIKL-QCKGHGECPTTENTETFIRLCERFNERN----------PPELIGVHCTH 150
Query: 428 GVGRTGCFIV 437
G RTG I
Sbjct: 151 GFNRTGFLIC 160
Score = 35.9 bits (82), Expect = 0.076
Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 11/70 (15%)
Query: 879 ERREIKQLQFTAWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSA 938
E+ IK ++ HG F+R N P + VHC+
Sbjct: 102 EKEGIKYIKL-QCKGHGECPTTENTETFIRLCERFNERN----------PPELIGVHCTH 150
Query: 939 GVGRTGCFIV 948
G RTG I
Sbjct: 151 GFNRTGFLIC 160
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 45.8 bits (108), Expect = 1e-04
Identities = 18/130 (13%), Positives = 32/130 (24%), Gaps = 44/130 (33%)
Query: 50 TETECTISELSPFTTYSVNI---------------------------SLRAHDVSTHSMT 82
L+ Y + + ++R V +
Sbjct: 454 VHRTYLRGNLAESKCYLITVTPVYADGPGSPESIKAYLKQAPPSKGPTVRTKKVGKNEAV 513
Query: 83 LSWSPPIKLNP----VKYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPTETECTISELS 138
L W Y I +T I + ++ + TE T+S L+
Sbjct: 514 LEWDQLPVDVQNGFIRNYTIFY-------------RTIIGNETAVNVDSSHTEYTLSSLT 560
Query: 139 PFTTYSVNIR 148
T Y V +
Sbjct: 561 SDTLYMVRMA 570
Score = 44.2 bits (104), Expect = 4e-04
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 11/83 (13%)
Query: 68 NISLRAHDVSTHSMTLSWSPPIKLN--PVKYKISLDAVKEFVDSQGITQTQIVPRRTLFL 125
N+S+ + + + L+W+ P + +KY I ++ T +QI P T
Sbjct: 204 NLSVINSEELSSILKLTWTNPSIKSVIILKYNI------QYRTKDASTWSQIPPEDT--- 254
Query: 126 EPTETECTISELSPFTTYSVNIR 148
T + T+ +L PFT Y IR
Sbjct: 255 ASTRSSFTVQDLKPFTEYVFRIR 277
Score = 32.7 bits (74), Expect = 1.3
Identities = 8/83 (9%), Positives = 22/83 (26%), Gaps = 15/83 (18%)
Query: 69 ISLRAHDVSTHSMTLSWSPPIKLNP---VKYKISLDAVKEFVDSQGITQTQIVPRRTLFL 125
+ + + + W+ P + +++ + D + IT Q
Sbjct: 404 VMDLKAFPKDNMLWVEWTTPRESVKKYILEWCVLSD------KAPCITDWQQEDG----- 452
Query: 126 EPTETECTISELSPFTTYSVNIR 148
L+ Y + +
Sbjct: 453 -TVHRTYLRGNLAESKCYLITVT 474
Score = 31.5 bits (71), Expect = 3.0
Identities = 11/43 (25%), Positives = 14/43 (32%), Gaps = 2/43 (4%)
Query: 47 LEPTETECTISELSPFTTYSVNISLRAHDVSTHSMTLSWSPPI 89
T + T+ +L PFT Y I R WS
Sbjct: 254 TASTRSSFTVQDLKPFTEYVFRI--RCMKEDGKGYWSDWSEEA 294
Score = 30.4 bits (68), Expect = 6.3
Identities = 10/80 (12%), Positives = 18/80 (22%), Gaps = 14/80 (17%)
Query: 71 LRAHDVSTHSMTLSWSPPIKLN-PVKYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPTE 129
L M W + + + + K + + T
Sbjct: 109 LSCIVNEGKKMRCEWDGGRETHLETNFTL-----KSEWATHKFADCKAKRD-------TP 156
Query: 130 TECTISE-LSPFTTYSVNIR 148
T CT+ F V +
Sbjct: 157 TSCTVDYSTVYFVNIEVWVE 176
>1yn9_A BVP, polynucleotide 5'-phosphatase; RNA triphosphatase, cysteine
phosphatase, P-loop, hydrolase; HET: PO4; 1.50A
{Autographa californicanucleopolyhedrovirus}
Length = 169
Score = 43.4 bits (102), Expect = 1e-04
Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 9/87 (10%)
Query: 1558 IDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLER-M 1616
I P Q +P +FI V + E+ + VHC+ G+ RTG + ++ +
Sbjct: 84 IQVPGQTLP-PESIVQEFIDTVKEFTEK-CPGMLVGVHCTHGINRTGYMVCRYLMHTLGI 141
Query: 1617 QYEGVIDLFQTVRILRTQRPAMVQTEH 1643
+ ID F R ++ ++
Sbjct: 142 APQEAIDRF------EKARGHKIERQN 162
Score = 40.3 bits (94), Expect = 0.002
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 657 GIPGRDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLER-MQYEGVID 715
+P +FI V + E+ + VHC+ G+ RTG + ++ + + ID
Sbjct: 90 TLPPESIVQEFIDTVKEFTEK-CPGMLVGVHCTHGINRTGYMVCRYLMHTLGIAPQEAID 148
Query: 716 LFQTVR 721
F+ R
Sbjct: 149 RFEKAR 154
Score = 37.6 bits (87), Expect = 0.012
Identities = 9/41 (21%), Positives = 15/41 (36%)
Query: 1727 PVGPLIVHCSAGVGRTGCFIVIDAKEQYQFCYHAALEYLGS 1767
P + VHC+ G+ RTG + A++
Sbjct: 112 PGMLVGVHCTHGINRTGYMVCRYLMHTLGIAPQEAIDRFEK 152
Score = 34.9 bits (80), Expect = 0.099
Identities = 13/79 (16%), Positives = 25/79 (31%), Gaps = 17/79 (21%)
Query: 368 ERREIKQLQFTAWPDHGVPEHPA--PFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHC 425
R + + P +P F+ ++ PG + VHC
Sbjct: 75 LRAGLLYKKI-QVPGQTLPPESIVQEFIDTVKEFTEKCPG-------------MLVGVHC 120
Query: 426 SAGVGRTGCFIVIDAMIER 444
+ G+ RTG + ++
Sbjct: 121 THGINRTGYMVCR-YLMHT 138
Score = 34.9 bits (80), Expect = 0.099
Identities = 13/79 (16%), Positives = 25/79 (31%), Gaps = 17/79 (21%)
Query: 879 ERREIKQLQFTAWPDHGVPEHPA--PFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHC 936
R + + P +P F+ ++ PG + VHC
Sbjct: 75 LRAGLLYKKI-QVPGQTLPPESIVQEFIDTVKEFTEKCPG-------------MLVGVHC 120
Query: 937 SAGVGRTGCFIVIDAMIER 955
+ G+ RTG + ++
Sbjct: 121 THGINRTGYMVCR-YLMHT 138
>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 124
Score = 42.3 bits (100), Expect = 2e-04
Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 17/83 (20%)
Query: 70 SLRAHDVSTHSMTLSWSPPIKLNP----VKYKISLDAVKEFVDSQGITQTQIVPRRTLFL 125
++ V++ S+ +SW PP YKI +G +T L
Sbjct: 34 NVSLEVVNSRSIKVSWLPPPSGTQNGFITGYKIRHRKT----TRRGEMET---------L 80
Query: 126 EPTETECTISELSPFTTYSVNIR 148
EP + L + YS +
Sbjct: 81 EPNNLWYLFTGLEKGSQYSFQVS 103
Score = 28.8 bits (65), Expect = 6.5
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 47 LEPTETECTISELSPFTTYSVNIS 70
LEP + L + YS +S
Sbjct: 80 LEPNNLWYLFTGLEKGSQYSFQVS 103
>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites,
calcium, cell adhesion molecules, cell cycle cell LINE,
conserved sequence; 1.60A {Homo sapiens} PDB: 3d1m_C
3n1q_C 3n1m_C 3n1g_C 3n1p_C
Length = 102
Score = 41.6 bits (98), Expect = 2e-04
Identities = 14/83 (16%), Positives = 24/83 (28%), Gaps = 13/83 (15%)
Query: 70 SLRAHDVSTHSMTLSWSPPIKLNP----VKYKISLDAVKEFVDSQGITQTQIVPRRTLFL 125
VS + L W+ N + I DS +
Sbjct: 10 IAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDV---------V 60
Query: 126 EPTETECTISELSPFTTYSVNIR 148
E ++ I L P T+Y + ++
Sbjct: 61 EGSKQWHMIGHLQPETSYDIKMQ 83
Score = 28.1 bits (63), Expect = 8.6
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 48 EPTETECTISELSPFTTYSVNI 69
E ++ I L P T+Y + +
Sbjct: 61 EGSKQWHMIGHLQPETSYDIKM 82
>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 42.0 bits (99), Expect = 2e-04
Identities = 17/83 (20%), Positives = 25/83 (30%), Gaps = 16/83 (19%)
Query: 70 SLRAHDVSTHSMTLSWSPPIKLNP----VKYKISLDAVKEFVDSQGITQTQIVPRRTLFL 125
+ A VST + L+W P +P + Y +
Sbjct: 23 DVVASLVSTRFIKLTWRTPAS-DPHGDNLTYSVF----YTKEGIARERVENTSH------ 71
Query: 126 EPTETECTISELSPFTTYSVNIR 148
P E + TI L P T Y +
Sbjct: 72 -PGEMQVTIQNLMPATVYIFRVM 93
>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK
protein, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.1.2.1
Length = 120
Score = 41.5 bits (97), Expect = 2e-04
Identities = 15/77 (19%), Positives = 24/77 (31%), Gaps = 12/77 (15%)
Query: 75 DVSTHSMTLSWSPPIKLN---PVKYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPTETE 131
V+ HS+ L W K P + + E D + + I T
Sbjct: 26 KVTHHSIELYWDLEQKEKRQGPQEQWLRF--SIEEEDPKMHSYGVIYT-------GYATR 76
Query: 132 CTISELSPFTTYSVNIR 148
+ L P T Y ++
Sbjct: 77 HVVEGLEPRTLYKFRLK 93
>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes
(CDON)binding...; fibronectin type III, FN3; NMR {Mus
musculus} SCOP: b.1.2.1
Length = 114
Score = 41.3 bits (97), Expect = 3e-04
Identities = 14/83 (16%), Positives = 24/83 (28%), Gaps = 13/83 (15%)
Query: 70 SLRAHDVSTHSMTLSWSPPIKLNP----VKYKISLDAVKEFVDSQGITQTQIVPRRTLFL 125
V+ ++ L W N + I DS +
Sbjct: 14 ITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDM---------V 64
Query: 126 EPTETECTISELSPFTTYSVNIR 148
E +IS L P T+Y + ++
Sbjct: 65 EGDRYWHSISHLQPETSYDIKMQ 87
Score = 28.6 bits (64), Expect = 6.7
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 48 EPTETECTISELSPFTTYSVNIS 70
E +IS L P T+Y + +
Sbjct: 65 EGDRYWHSISHLQPETSYDIKMQ 87
>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor;
2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A
1lwr_A
Length = 209
Score = 42.9 bits (101), Expect = 3e-04
Identities = 17/131 (12%), Positives = 34/131 (25%), Gaps = 43/131 (32%)
Query: 49 PTETECTISELSPFTTYSVNIS-----------------------------LRAHDVSTH 79
E TI L P TTY+V ++ +
Sbjct: 65 SMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKLEGQMGEDGN 124
Query: 80 SMTLSWSPPIKLN-PVK-YKISLDAVKEFVDSQGITQTQIVPRRTLFLEPTETECTISEL 137
S+ ++ P++ Y + A+ S+ + ++ + L
Sbjct: 125 SIKVNLIKQDDGGSPIRHYLVRYRAL----SSEWKPEIRL--------PSGSDHVMLKSL 172
Query: 138 SPFTTYSVNIR 148
Y V +
Sbjct: 173 DWNAEYEVYVV 183
Score = 37.1 bits (86), Expect = 0.028
Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 11/77 (14%)
Query: 75 DVSTHSMTLSWSPPIKLN--PV-KYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPTETE 131
+ + + + + P P+ KYK E+ + E
Sbjct: 18 EPYSSTAQVQFDEPEATGGVPILKYKA------EW--RAVGEEVWHSKWYDAKEASMEGI 69
Query: 132 CTISELSPFTTYSVNIR 148
TI L P TTY+V +
Sbjct: 70 VTIVGLKPETTYAVRLA 86
>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related
receptor containing LDLR class A repeats, sorla; NMR
{Homo sapiens}
Length = 108
Score = 40.5 bits (95), Expect = 4e-04
Identities = 14/83 (16%), Positives = 25/83 (30%), Gaps = 16/83 (19%)
Query: 68 NISLRAHDVSTHSMTLSWSPPIKLNPV--KYKISLDAVKEFVDSQGITQTQIVPRRTLFL 125
N+ L + + W+PPI + + +Y + E+ S
Sbjct: 13 NLQLSLPREAEGVIVGHWAPPIHTHGLIREYIV------EYSRSGSKMWAS--------Q 58
Query: 126 EPTETECTISELSPFTTYSVNIR 148
I L T Y+V +
Sbjct: 59 RAASNFTEIKNLLVNTLYTVRVA 81
>1x4x_A Fibronectin type-III domain containing protein 3A; FN3,
immunoglobulin-like beta- sandwich fold, KIAA0970,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 106
Score = 40.4 bits (95), Expect = 4e-04
Identities = 13/78 (16%), Positives = 23/78 (29%), Gaps = 16/78 (20%)
Query: 70 SLRAHDVSTHSMTLSWSPPIKLN-PV-KYKISLDAVKEFVDSQGITQTQIVPRRTLFLEP 127
+ S ++W P+ V +Y++ V+ + +
Sbjct: 13 PPQVTCRSATCAQVNWEVPLSNGTDVTEYRLEWGGVEGSM--------------QICYCG 58
Query: 128 TETECTISELSPFTTYSV 145
I LSP TTY
Sbjct: 59 PGLSYEIKGLSPATTYYC 76
Score = 28.8 bits (65), Expect = 6.0
Identities = 7/18 (38%), Positives = 7/18 (38%)
Query: 50 TETECTISELSPFTTYSV 67
I LSP TTY
Sbjct: 59 PGLSYEIKGLSPATTYYC 76
>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.2.1
Length = 107
Score = 40.5 bits (95), Expect = 4e-04
Identities = 12/81 (14%), Positives = 28/81 (34%), Gaps = 14/81 (17%)
Query: 70 SLRAHDVSTHSMTLSWSPPIKLN-PV-KYKISLDAVKEFVDSQGITQTQIVPRRTLFLEP 127
++ + ++ L W PP +L + Y++ ++ + I
Sbjct: 12 TMMISTTAMNTALLQWHPPKELPGELLGYRL------QYCRADEARPNTID------FGK 59
Query: 128 TETECTISELSPFTTYSVNIR 148
+ T++ L TTY +
Sbjct: 60 DDQHFTVTGLHKGTTYIFRLA 80
>1ohe_A CDC14B, CDC14B2 phosphatase; protein phosphatase, cell cycle,
hydrolase; HET: SEP; 2.20A {Homo sapiens} SCOP: c.45.1.1
c.45.1.1 PDB: 1ohc_A 1ohd_A
Length = 348
Score = 43.5 bits (102), Expect = 5e-04
Identities = 25/87 (28%), Positives = 30/87 (34%), Gaps = 17/87 (19%)
Query: 657 GIPGRDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLE-RMQYEGVID 715
P +F+ + G I VH AG+GRTG I I+ RM I
Sbjct: 251 STPTDAIVKEFLDICENAE------GAIAVHSKAGLGRTGTLIACYIMKHYRMTAAETIA 304
Query: 716 LFQTVRILRTQRPAMVQTESIEPGQQF 742
R RP V P QQF
Sbjct: 305 WV------RICRPGSVIG----PQQQF 321
Score = 43.1 bits (101), Expect = 6e-04
Identities = 26/101 (25%), Positives = 32/101 (31%), Gaps = 14/101 (13%)
Query: 1546 DATSRTLRQFQLIDWP-EQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTG 1604
DA T F D G + +F+ + G I VH AG+GRTG
Sbjct: 231 DAKRFTDAGFDHHDLFFADGSTPTDAIVKEFLDICENAE------GAIAVHSKAGLGRTG 284
Query: 1605 VFITLSIVLE-RMQYEGVIDLFQTVRILRTQRPAMVQTEHL 1644
I I+ RM I R RP V
Sbjct: 285 TLIACYIMKHYRMTAAETIAWV------RICRPGSVIGPQQ 319
Score = 39.2 bits (91), Expect = 0.010
Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 7/80 (8%)
Query: 1686 EHNSPGLLWIIGPIIAALALSICLVLLFILKSSLESSGVNLPVGPLIVHCSAGVGRTGCF 1745
G + +V F+ E++ G + VH AG+GRTG
Sbjct: 234 RFTDAGFDHHDLFFADGSTPTDAIVKEFL--DICENAE-----GAIAVHSKAGLGRTGTL 286
Query: 1746 IVIDAKEQYQFCYHAALEYL 1765
I + Y+ + ++
Sbjct: 287 IACYIMKHYRMTAAETIAWV 306
Score = 34.6 bits (79), Expect = 0.28
Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 5/60 (8%)
Query: 419 GPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIH 478
G + VH AG+GRTG I +++ + V R R V Q +
Sbjct: 270 GAIAVHSKAGLGRTGTLIAC-YIMKH-YRMTAAETIAWV---RICRPGSVIGPQQQFLVM 324
Score = 34.6 bits (79), Expect = 0.28
Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 5/60 (8%)
Query: 930 GPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIH 989
G + VH AG+GRTG I +++ + V R R V Q +
Sbjct: 270 GAIAVHSKAGLGRTGTLIAC-YIMKH-YRMTAAETIAWV---RICRPGSVIGPQQQFLVM 324
>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 121
Score = 40.4 bits (95), Expect = 6e-04
Identities = 14/78 (17%), Positives = 29/78 (37%), Gaps = 13/78 (16%)
Query: 68 NISLRAHDVSTHSMTLSWSPPIKLN-PV-KYKISLDAVKEFVDSQGITQTQIVPRRTLFL 125
+ V ++ L+W+ P N P+ +Y + E ++ + +
Sbjct: 23 HPVATLSTVERRAINLTWTKPFDGNSPLIRYIL------EMSENNAPWTVLLA-----SV 71
Query: 126 EPTETECTISELSPFTTY 143
+P T T+ L P +Y
Sbjct: 72 DPKATSVTVKGLVPARSY 89
>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor
complex LIFR LIF, cytokine RE cytokine complex; HET: NAG
FUC MAN; 4.00A {Mus musculus}
Length = 488
Score = 43.4 bits (101), Expect = 6e-04
Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 10/81 (12%)
Query: 70 SLRAHDVSTHSMTLSWSPPIKLN--PVKYKISLDAVKEFVDSQGITQTQIVPRRTLFLEP 127
SL+ D+++ +T SW P + +I E + + + R E
Sbjct: 392 SLKVKDINSTVVTFSWYLPGNFTKINLLCQI------EICKANSKKEVRNATIRGA--ED 443
Query: 128 TETECTISELSPFTTYSVNIR 148
+ + +L+P+T Y+ +R
Sbjct: 444 STYHVAVDKLNPYTAYTFRVR 464
Score = 31.1 bits (69), Expect = 3.7
Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 47 LEPTETECTISELSPFTTYSVNISLRAHDVSTHSMTLSWSPPI 89
E + + +L+P+T Y+ + + S WS
Sbjct: 441 AEDSTYHVAVDKLNPYTAYTFRVRCSSKTFWKWS---RWSDEK 480
>2b5i_B Interleukin-2 receptor beta chain; four-helix bundle, fibronectin
domain, cytokine-cytokine REC complex; HET: NAG; 2.30A
{Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3qaz_B*
2erj_B*
Length = 214
Score = 42.1 bits (98), Expect = 6e-04
Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 6/81 (7%)
Query: 70 SLRAHDVSTHSMTLSWSPPIKLNPVKYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPTE 129
SL+ V TH +SW + + + +A L L+ +
Sbjct: 111 SLQVVHVETHRCNISWEISQASHYFERHLEFEARTLSPGHTWEEAP------LLTLKQKQ 164
Query: 130 TECTISELSPFTTYSVNIRRR 150
+ L+P T Y +R +
Sbjct: 165 EWICLETLTPDTQYEFQVRVK 185
Score = 32.1 bits (72), Expect = 1.2
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 43 RTLFLEPTETECTISELSPFTTYSVNISLRAHDVSTHSMTLS-WSPPI 89
L L+ + + L+P T Y + R + T S WS P+
Sbjct: 156 PLLTLKQKQEWICLETLTPDTQYEFQV--RVKPLQGEFTTWSPWSQPL 201
>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 134
Score = 40.8 bits (96), Expect = 6e-04
Identities = 12/83 (14%), Positives = 30/83 (36%), Gaps = 13/83 (15%)
Query: 70 SLRAHDVSTHSMTLSWSPPIKLNP----VKYKISLDAVKEFVDSQGITQTQIVPRRTLFL 125
+ + + ++ +SW PP + +Y ++ +AV + + +
Sbjct: 24 KVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGEDRGRHVVDG---------I 74
Query: 126 EPTETECTISELSPFTTYSVNIR 148
+ + L +T Y V +R
Sbjct: 75 SREHSSWDLVGLEKWTEYRVWVR 97
>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine
6 R beta subunit, signaling protein; 2.00A {Homo
sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A
Length = 215
Score = 42.3 bits (99), Expect = 6e-04
Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 18/101 (17%)
Query: 57 SELSPFTTYSV-------NISLRAHDVSTHSMTLSWSPPIKLN--PVKYKISLDAVKEFV 107
S+ F N+S+ + + + L+W+ P + +KY I ++
Sbjct: 91 SDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNI------QYR 144
Query: 108 DSQGITQTQIVPRRTLFLEPTETECTISELSPFTTYSVNIR 148
T +QI P T T + T+ +L PFT Y IR
Sbjct: 145 TKDASTWSQIPPEDT---ASTRSSFTVQDLKPFTEYVFRIR 182
Score = 31.9 bits (72), Expect = 1.5
Identities = 11/43 (25%), Positives = 14/43 (32%), Gaps = 2/43 (4%)
Query: 47 LEPTETECTISELSPFTTYSVNISLRAHDVSTHSMTLSWSPPI 89
T + T+ +L PFT Y I R WS
Sbjct: 159 TASTRSSFTVQDLKPFTEYVFRI--RCMKEDGKGYWSDWSEEA 199
>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A
{Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
Length = 205
Score = 41.2 bits (97), Expect = 0.001
Identities = 15/134 (11%), Positives = 37/134 (27%), Gaps = 44/134 (32%)
Query: 49 PTETECTISELSPFTTYS-----VNI-------------------------SLRAHDVST 78
P + ++SP+ Y+ N ++
Sbjct: 59 PNTDSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDNVVGQGTEP 118
Query: 79 HSMTLSWSPPIKLN----PVKYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPTETECTI 134
+++ +SW+P ++ Y +S K + + I + I
Sbjct: 119 NNLVISWTPMPEIEHNAPNFHYYVS---WKRDIPAAAWENNNIFD-------WRQNNIVI 168
Query: 135 SELSPFTTYSVNIR 148
++ F Y + +
Sbjct: 169 ADQPTFVKYLIKVV 182
Score = 33.9 bits (78), Expect = 0.30
Identities = 10/72 (13%), Positives = 19/72 (26%), Gaps = 12/72 (16%)
Query: 75 DVSTHSMTLSWSPPIKLN-PV-KYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPTETEC 132
+ W P+ Y I +F S + P
Sbjct: 15 TCQADKAEIHWEQQGDNRSPILHYTI------QFNTSFTPASWDAAYEKV----PNTDSS 64
Query: 133 TISELSPFTTYS 144
+ ++SP+ Y+
Sbjct: 65 FVVQMSPWANYT 76
>2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin
type-III, beta-N-acetylglucosaminidase, cohesin,
hydrolase; 1.80A {Clostridium perfringens}
Length = 238
Score = 41.8 bits (97), Expect = 0.001
Identities = 13/78 (16%), Positives = 31/78 (39%), Gaps = 16/78 (20%)
Query: 71 LRAHDVSTHSMTLSWSPPIKLNPVKYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPTET 130
+A +++ ++T++W+ P ++ I + D + + + ET
Sbjct: 157 FKASEINKKNVTVTWTEPETTEGLEGYI------LYKDGKKVAEI----------GKDET 200
Query: 131 ECTISELSPFTTYSVNIR 148
T +L+ T Y+ I
Sbjct: 201 SYTFKKLNRHTIYNFKIA 218
>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 124
Score = 39.6 bits (93), Expect = 0.001
Identities = 14/76 (18%), Positives = 28/76 (36%), Gaps = 8/76 (10%)
Query: 70 SLRAHDVSTHSMTLSWSPPIKLN-PV-KYKISLDAVKEFVDSQGITQTQIVPRRTLFLEP 127
+L ++ S+TL + P + ++ + E + + L EP
Sbjct: 23 NLGISNIGPRSVTLQFRPGYDGKTSISRWLV------EAQVGVVGEGEEWLLIHQLSNEP 76
Query: 128 TETECTISELSPFTTY 143
+ +L+PFT Y
Sbjct: 77 DARSMEVPDLNPFTCY 92
>1x5x_A Fibronectin type-III domain containing protein 3A; structural
genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 109
Score = 39.2 bits (92), Expect = 0.001
Identities = 11/77 (14%), Positives = 19/77 (24%), Gaps = 15/77 (19%)
Query: 70 SLRAHDVSTHSMTLSWSPPIKLNP---VKYKISLDAVKEFVDSQGITQTQIVPRRTLFLE 126
S ++L WS P + Y + E + +
Sbjct: 13 SPVLTKAGITWLSLQWSKPSGTPSDEGISYIL------EMEEETSGYGFKPKYD------ 60
Query: 127 PTETECTISELSPFTTY 143
+ T+ L T Y
Sbjct: 61 GEDLAYTVKNLRRSTKY 77
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 42.6 bits (99), Expect = 0.001
Identities = 25/141 (17%), Positives = 37/141 (26%), Gaps = 45/141 (31%)
Query: 43 RTLFLEPTETECTISELSPFTTYSVNIS-------------------------------- 70
R + IS L FT Y + +
Sbjct: 738 RPFEKVVNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVG 797
Query: 71 -LRAHDVSTHSMTLSWSPPIKLN--PVKYKISLDAVKEFVDSQGITQTQIVPRRTLFLEP 127
+ + + L W P + N V Y++S + T+
Sbjct: 798 PVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCDTRKH---------FA 848
Query: 128 TETECTISELSPFTTYSVNIR 148
E C + LSP YSV IR
Sbjct: 849 LERGCRLRGLSP-GNYSVRIR 868
Score = 41.1 bits (95), Expect = 0.003
Identities = 22/156 (14%), Positives = 39/156 (25%), Gaps = 33/156 (21%)
Query: 61 PFTTYSVNISLRAHDVSTHSMTLSWSPPIKLNP-------VKYKISLDAVKEFVDSQG-- 111
+ + + S + L W P + + YK + D Q
Sbjct: 465 QASCENELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDAC 524
Query: 112 ------ITQTQIVPRRTLFLEPTETECTISELSPFTTYSVNIRRRQPRKYPESSAVTRPL 165
+ R + L P+T Y++ ++ +
Sbjct: 525 GSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVK-----------TLVT-- 571
Query: 166 MSGEIMTSHAPSDPVEMRRLNFQTPGMVSHPPIPIS 201
S E T A SD + QT P+
Sbjct: 572 FSDERRTYGAKSDII-----YVQTDATNPSVPLDPI 602
Score = 41.1 bits (95), Expect = 0.004
Identities = 27/231 (11%), Positives = 52/231 (22%), Gaps = 47/231 (20%)
Query: 30 DSQGITQTQIVPRRTLFLEPTETECTISELSPFTTYSVNI-------------------- 69
+S + R + L P+T Y++ +
Sbjct: 527 NSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDII 586
Query: 70 -------------SLRAHDVSTHSMTLSWSPPIKLN--PVKYKISLDAVKEFVDSQGITQ 114
+ S+ + L W PP N Y + + E + +
Sbjct: 587 YVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDPNGNITHYLVFWERQAEDSELFELDY 646
Query: 115 TQIVPRRTLFLEPTETECTISELSPFTTYSVNIRR--------RQPRKYPESSAVTRPLM 166
+ E S+ + Y + Q K E S+ +
Sbjct: 647 CLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFRKTFE 706
Query: 167 SGEIMTSHAPSDPVEMRRLNFQTPGMVSHPPIPISRLAQ----HIENLKAN 213
P + R L + P ++ I L+
Sbjct: 707 DYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESLVISGLRHF 757
Score = 36.4 bits (83), Expect = 0.096
Identities = 16/119 (13%), Positives = 28/119 (23%), Gaps = 6/119 (5%)
Query: 76 VSTHSMTLSWSPPIKLNPVKYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPTETECTIS 135
+ S ++ + + S + P + IS
Sbjct: 696 LEESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEK---VVNKESLVIS 752
Query: 136 ELSPFTTYSVNIR-RRQPRKYPESSAVTRPLMSGEIMTSHAPSDPVEMRRLNFQTPGMV 193
L FT Y + ++ Q S +S M D V +V
Sbjct: 753 GLRHFTGYRIELQACNQDTPEERCSVAAY--VSARTMPEAKADDIVGPVTHEIFENNVV 809
>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold,
fibronectin type III, structural genomics; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 117
Score = 39.3 bits (92), Expect = 0.001
Identities = 20/76 (26%), Positives = 25/76 (32%), Gaps = 13/76 (17%)
Query: 70 SLRAHDVSTHSMTLSWSPPIKLN-PV-KYKISLDAVKEFVDSQGITQTQIVPRRTLFLEP 127
+ DV+ +S+TLSW P P Y I E Q V
Sbjct: 21 KPQVTDVTKNSVTLSWQPGTPGTLPASAYII------EAFSQSVSNSWQTVANH-----V 69
Query: 128 TETECTISELSPFTTY 143
T T+ L P T Y
Sbjct: 70 KTTLYTVRGLRPNTIY 85
>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 119
Score = 39.3 bits (92), Expect = 0.002
Identities = 9/78 (11%), Positives = 24/78 (30%), Gaps = 10/78 (12%)
Query: 71 LRAHDVSTHSMTLSWSPPIKLNPVKYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPTET 130
+ +S+ +++ W ++ Y+I + + + E
Sbjct: 25 VGVKVLSSSEISVHWEHVLEKIVESYQIRY----------WAAHDKEEAANRVQVTSQEY 74
Query: 131 ECTISELSPFTTYSVNIR 148
+ L P T Y + +
Sbjct: 75 SARLENLLPDTQYFIEVG 92
>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type
III domain containing protein, cytoskeleton, muscle
contraction; NMR {Mus musculus} SCOP: b.1.2.1
Length = 111
Score = 38.9 bits (91), Expect = 0.002
Identities = 12/77 (15%), Positives = 21/77 (27%), Gaps = 14/77 (18%)
Query: 70 SLRAHDVSTHSMTLSWSPPIKLN--PVK-YKISLDAVKEFVDSQGITQTQIVPRRTLFLE 126
L DV+ + TL W PP ++ + Y + E+
Sbjct: 14 HLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLV------EYCLEGSEEWVPANKEPV---- 63
Query: 127 PTETECTISELSPFTTY 143
T+ +L
Sbjct: 64 -ERCGFTVKDLPTGARI 79
>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1,
midin-2, ring finger protein 60, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 127
Score = 39.1 bits (91), Expect = 0.002
Identities = 14/84 (16%), Positives = 24/84 (28%), Gaps = 10/84 (11%)
Query: 69 ISLRAHDVSTHSMTLSWSP----PIKLNPVKYKISLDAVKEFVDSQGITQTQIVPRRTLF 124
I S ++T+ W I ++Y I + IVP
Sbjct: 21 IREELCTASHDTITVHWISDDEFSISSYELQYTIFTGQANFISLYNSVDSWMIVP----- 75
Query: 125 LEPTETECTISELSPFTTYSVNIR 148
+ T+ L T Y ++
Sbjct: 76 -NIKQNHYTVHGLQSGTRYIFIVK 98
>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 106
Score = 38.4 bits (90), Expect = 0.002
Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 18/77 (23%)
Query: 71 LRAHDVSTHSMTLSWSPPIKLN--PV-KYKISLDAVKEFVDSQGITQTQIVPRRTLFLEP 127
L + + S+TL+W N PV Y I ++ + Q V
Sbjct: 14 LVVTETTATSVTLTWDSG---NSEPVTYYGI------QYRAAGTEGPFQEVDG------V 58
Query: 128 TETECTISELSPFTTYS 144
T +I LSPF+ Y+
Sbjct: 59 ATTRYSIGGLSPFSEYA 75
>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor
complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 b.1.2.1 PDB: 1p9m_A
Length = 303
Score = 41.3 bits (96), Expect = 0.002
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 11/84 (13%)
Query: 67 VNISLRAHDVSTHSMTLSWSPPIKLN--PVKYKISLDAVKEFVDSQGITQTQIVPRRTLF 124
N+S+ + + + L+W+ P + +KY I ++ T +QI P T
Sbjct: 204 HNLSVINSEELSSILKLTWTNPSIKSVIILKYNI------QYRTKDASTWSQIPPEDT-- 255
Query: 125 LEPTETECTISELSPFTTYSVNIR 148
T + T+ +L PFT Y IR
Sbjct: 256 -ASTRSSFTVQDLKPFTEYVFRIR 278
Score = 31.3 bits (70), Expect = 2.7
Identities = 11/43 (25%), Positives = 14/43 (32%), Gaps = 2/43 (4%)
Query: 47 LEPTETECTISELSPFTTYSVNISLRAHDVSTHSMTLSWSPPI 89
T + T+ +L PFT Y I R WS
Sbjct: 255 TASTRSSFTVQDLKPFTEYVFRI--RCMKEDGKGYWSDWSEEA 295
>1x3d_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 118
Score = 38.9 bits (91), Expect = 0.002
Identities = 12/77 (15%), Positives = 28/77 (36%), Gaps = 14/77 (18%)
Query: 70 SLRAHDVSTHSMTLSWSPPIKLN-PV-KYKISLDAVKEFVDSQGITQTQIVPRRTLFLEP 127
R + + +S+TL W P + + + E+ + +G +
Sbjct: 23 PPRIANRTKNSLTLQWKAPSDNGSKIQNFVL------EWDEGKGNGEFCQC------YMG 70
Query: 128 TETECTISELSPFTTYS 144
++ + I++LSP
Sbjct: 71 SQKQFKITKLSPAMGCK 87
>1k85_A Chitinase A1; fibronectin type III domain, chitin binding domain,
carbohydrase, horizontal gene transfer, hydrolase; NMR
{Bacillus circulans} SCOP: b.1.2.1
Length = 88
Score = 38.0 bits (89), Expect = 0.002
Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 20/80 (25%)
Query: 70 SLRAHDVSTHSMTLSWSPPIKLNPVK-YKISLDAVKEFVDSQGITQTQIVPRRTLFLEPT 128
+L + +T S+TLSW+ V Y + + + T T
Sbjct: 9 NLASTAQTTSSITLSWTASTDNVGVTGYDV-------YNGTALATTV------------T 49
Query: 129 ETECTISELSPFTTYSVNIR 148
T TIS L+ T+Y+ ++
Sbjct: 50 GTTATISGLAADTSYTFTVK 69
>3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain,
cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond,
glycoprotein, membrane; 2.14A {Homo sapiens}
Length = 201
Score = 39.7 bits (92), Expect = 0.003
Identities = 26/161 (16%), Positives = 48/161 (29%), Gaps = 42/161 (26%)
Query: 50 TETECTISELSPFTTYSVNISLRAHDVSTHS----------------------------M 81
T TEC S LS + +++ + RA HS +
Sbjct: 51 TLTECDFSSLSKYGDHTLRV--RAEFADEHSDWVQITFSPVDDTIIGPPGMQVEVLADCL 108
Query: 82 TLSWSPPIKLNPVKYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPTETECTISELSPFT 141
+ + P N + + + + + + + P + L P+T
Sbjct: 109 HMRFLAPKIENEYETWTMKNVYNSWTYNVQYWKQGTDEKFQ--ITPQYDFEVLRNLEPWT 166
Query: 142 TYSVNIR---RRQPRKYPESSAVTRPLMSGEIMTSHAPSDP 179
TY V +R + + S V T+H + P
Sbjct: 167 TYCVQVRGFLPDRNKAGEWSEPVC-------EQTTHDETVP 200
Score = 36.3 bits (83), Expect = 0.049
Identities = 23/157 (14%), Positives = 47/157 (29%), Gaps = 30/157 (19%)
Query: 71 LRAHDVSTHSMTLSWSPPIKLNP-----VKYKISLDAVKEFVDSQGITQTQIVPRRTLFL 125
+R + V+ + L W P +Y + + +
Sbjct: 8 VRMNSVNFKN-ILQWESPAFAKGQLTFTAQYLSYRIFQDKCMQT---------------- 50
Query: 126 EPTETECTISELSPFTTYSVNIRRRQPRKYPESSAVTRPLMSGEIMTSHAPSDPVEMRRL 185
T TEC S LS + +++ R R S V + P +++ L
Sbjct: 51 --TLTECDFSSLSKYGDHTL--RVRAEFADEHSDWVQITFSPVDDTIIGPPG--MQVEVL 104
Query: 186 NFQTPGMVSHPPIPISRLAQHIENLKANDNLKFSQEY 222
P I ++N+ ++ ++ +Y
Sbjct: 105 ADCLHMRFLAPKIENEYETWTMKNV--YNSWTYNVQY 139
>2crz_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 110
Score = 38.1 bits (89), Expect = 0.003
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 16/77 (20%)
Query: 75 DVSTHSMTLSWSPPIKLN--PV-KYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPTETE 131
+ L W PP+ P+ Y + E + ++ + +E E
Sbjct: 20 RPKAKEIQLRWGPPLVDGGSPISCYSV------EMSPIEKDEPREVY-------QGSEVE 66
Query: 132 CTISELSPFTTYSVNIR 148
CT+S L P TYS +R
Sbjct: 67 CTVSSLLPGKTYSFRLR 83
>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW-
type protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 110
Score = 38.1 bits (89), Expect = 0.004
Identities = 12/77 (15%), Positives = 23/77 (29%), Gaps = 14/77 (18%)
Query: 70 SLRAHDVSTHSMTLSWSPPIKLN--PVK-YKISLDAVKEFVDSQGITQTQIVPRRTLFLE 126
L V+ ++T+ W PP + + Y + E+
Sbjct: 13 LLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVL------EYCFEGTEDWIVANKDLI---- 62
Query: 127 PTETECTISELSPFTTY 143
+T+ TI+ L
Sbjct: 63 -DKTKFTITGLPTDAKI 78
>3v0d_A Voltage-sensor containing phosphatase; PTP, hydrolase; HET: PO4;
1.10A {Ciona intestinalis} PDB: 3v0f_A* 3v0g_A 3v0h_A*
3awf_A 3v0j_A 3awe_A 3awg_A 3v0e_A 3v0i_A
Length = 339
Score = 40.4 bits (93), Expect = 0.005
Identities = 22/187 (11%), Positives = 47/187 (25%), Gaps = 11/187 (5%)
Query: 1509 YWPSERSIRYE----WFVVEPIAEYNMPQYVLREFKVTDARDATSRTLRQFQLIDWPEQG 1564
+PS V + ++ + D ++ + +
Sbjct: 38 SFPSSGRQSLFRNPIGEVSRFFKTKHPDKFRIYNLCSERGYD-ETKFDNHVYRVMIDDHN 96
Query: 1565 VPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVIDL 1624
VP + FI D I +H G GRTG ++ ++ +
Sbjct: 97 VPTL-VDLLKFIDDAKVWMTS-DPDHVIAIHSKGGKGRTGTLVSSWLLEDGKFDTA---- 150
Query: 1625 FQTVRILRTQRPAMVQTEHLYTSSPFSEQLALDMREVPPGPPLKRPDPNIPGDVPPVHVI 1684
+ + ++R + S+ + E + P V V +
Sbjct: 151 KEALEYFGSRRTDFEVGDVFQGVETASQIRYVGYFEKIKKNYGGQLPPMKKLKVTGVTIT 210
Query: 1685 VEHNSPG 1691
Sbjct: 211 AIQGVGR 217
Score = 37.3 bits (85), Expect = 0.036
Identities = 22/186 (11%), Positives = 50/186 (26%), Gaps = 12/186 (6%)
Query: 656 DGIPGRDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQY--EGV 713
+P + FI D I +H G GRTG ++ ++ + +
Sbjct: 95 HNVPTLVDLLKFIDDAKVWMTS-DPDHVIAIHSKGGKGRTGTLVSSWLLEDGKFDTAKEA 153
Query: 714 IDLFQTVRILRTQRPAMVQTESIEPGQQFTWDHSSMEMNKAKNRYANVIAYDHSRVILST 773
++ F + R E+ Q + + + + V
Sbjct: 154 LEYFGSRRTDFEVGDVFQGVET--ASQIRYVGYFEKIKKNYGGQLPPMKKLKVTGVT--- 208
Query: 774 VDGIPGSDYINANYCDGYRKHNAYVATQGPLQETLGDFWRMVWELRSVTIVMMTKLEERT 833
+ I G N + Q L + + + + + +++
Sbjct: 209 ITAIQGVGRGNGSDLS----MQIVSERQEVLLCKFAEGYNCALQYDATDDCVTCEVKNCP 264
Query: 834 RIKCDQ 839
+ D
Sbjct: 265 VLAGDI 270
Score = 30.4 bits (67), Expect = 4.9
Identities = 19/112 (16%), Positives = 36/112 (32%), Gaps = 16/112 (14%)
Query: 329 YWPSRGTETYGHI----TVTLQDVQELASYCIRTFMINKGADSERREIKQLQFTAWPDHG 384
+PS G ++ + + I +G D + + + DH
Sbjct: 38 SFPSSGRQSLFRNPIGEVSRFFKTKHPDKFRIYNLCSERGYDETKFDNHVYRV-MIDDHN 96
Query: 385 VPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFI 436
VP L F+ + + S ++ + +H G GRTG +
Sbjct: 97 VP-TLVDLLKFIDDAKVW------MTSDPDHV----IAIHSKGGKGRTGTLV 137
Score = 30.4 bits (67), Expect = 4.9
Identities = 19/112 (16%), Positives = 36/112 (32%), Gaps = 16/112 (14%)
Query: 840 YWPSRGTETYGHI----TVTLQDVQELASYCIRTFMINKGADSERREIKQLQFTAWPDHG 895
+PS G ++ + + I +G D + + + DH
Sbjct: 38 SFPSSGRQSLFRNPIGEVSRFFKTKHPDKFRIYNLCSERGYDETKFDNHVYRV-MIDDHN 96
Query: 896 VPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFI 947
VP L F+ + + S ++ + +H G GRTG +
Sbjct: 97 VP-TLVDLLKFIDDAKVW------MTSDPDHV----IAIHSKGGKGRTGTLV 137
>2crm_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 37.8 bits (88), Expect = 0.005
Identities = 12/77 (15%), Positives = 26/77 (33%), Gaps = 15/77 (19%)
Query: 75 DVSTHSMTLSWSPPIKLN--PV-KYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPTETE 131
+ +HS ++W PP + KY + E + + +++ E
Sbjct: 29 KIHSHSFKITWDPPKDNGGATINKYVV------EMAEGSNGNKWEMIY------SGATRE 76
Query: 132 CTISELSPFTTYSVNIR 148
L+P Y + +
Sbjct: 77 HLCDRLNPGCFYRLRVY 93
>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein
binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP:
b.1.2.1
Length = 115
Score = 37.6 bits (87), Expect = 0.005
Identities = 18/113 (15%), Positives = 34/113 (30%), Gaps = 18/113 (15%)
Query: 75 DVSTHSMTLSWSPPIKLN-PV-KYKISLDAVKEFVDSQGITQT-QIVPRRTLFLEPTETE 131
+S S+ L W P P+ +K+ V + + Q +
Sbjct: 13 RLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFT 72
Query: 132 CTISELSPFTTYSVNIRRRQPRKYPESSAVTRPLMSGEIMTSHAPSDPVEMRR 184
++++L P TY I AV + + S S ++
Sbjct: 73 ASVTDLKPQHTYRFRIL-----------AVYS---NNDNKES-NTSAKFYLQP 110
>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III
repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 37.4 bits (87), Expect = 0.006
Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 11/74 (14%)
Query: 75 DVSTHSMTLSWSPPIKLN--PV-KYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPTETE 131
+ + + + + P P+ KYK + + ++ + E
Sbjct: 16 EPYSSTAQVQFDEPEATGGVPILKYKAE---WRAVGEEVWHSKWYDAKEAS-----MEGI 67
Query: 132 CTISELSPFTTYSV 145
TI L P TTY+V
Sbjct: 68 VTIVGLKPETTYAV 81
>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER,
receptor tyrosine kinase mertk, FN3 domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 124
Score = 37.5 bits (87), Expect = 0.007
Identities = 13/85 (15%), Positives = 28/85 (32%), Gaps = 15/85 (17%)
Query: 68 NISLRAHDVSTHSMTLSWSPPIKLNP----VKYKISLDAVKEFVDSQGITQTQIVPRRTL 123
N+++ + S+ ++ + W P V Y+IS + + + +
Sbjct: 24 NVTVFLN-ESSDNVDIRWMKPPTKQQDGELVGYRISHVWQSAGISKELLEEV-------- 74
Query: 124 FLEPTETECTISELSPFTTYSVNIR 148
+ IS T +V I
Sbjct: 75 --GQNGSRARISVQVHNATCTVRIA 97
>1d5r_A Phosphoinositide phosphotase PTEN; C2 domain, phosphotidylinositol,
hydrolase; HET: TLA; 2.10A {Homo sapiens} SCOP: b.7.1.1
c.45.1.1
Length = 324
Score = 39.1 bits (90), Expect = 0.011
Identities = 23/125 (18%), Positives = 42/125 (33%), Gaps = 9/125 (7%)
Query: 380 WPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVID 439
+ +H P L ++ S + + V +HC AG GRTG I
Sbjct: 79 VAQYPFEDHNPPQLELIKPFCEDLDQWLSEDDNHV------AAIHCKAGKGRTGVMICA- 131
Query: 440 AMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHDALLEAVLCGNTEIPARSLHV 499
++ R K K + +R + V Q +++ +L + + +L
Sbjct: 132 YLLHRGKFLKAQEALDFYGEVRTRDKKGVTIPSQRRYVYY--YSYLLKNHLDYRPVALLF 189
Query: 500 HIQKL 504
H
Sbjct: 190 HKMMF 194
Score = 37.6 bits (86), Expect = 0.028
Identities = 28/174 (16%), Positives = 56/174 (32%), Gaps = 20/174 (11%)
Query: 597 QHIENLKANDNLKFSQEYESIEPGQQFTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVD 656
+I+++ + K Y+ + +D + R A DH
Sbjct: 42 NNIDDVVRFLDSKHKNHYKIYNLCAERHYDTAKFN-----CRVAQYPFEDH--------- 87
Query: 657 GIPGRDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVIDL 716
P + F + + + + +HC AG GRTGV I + +L R ++ +
Sbjct: 88 NPPQLELIKPFCEDLDQWLSE-DDNHVAAIHCKAGKGRTGVMIC-AYLLHRGKFLKAQEA 145
Query: 717 FQTVRILRTQRPAMVQTESIEPGQQFTWDHSSMEMNKAKNRYANVIAYDHSRVI 770
+RT+ V P Q+ + S + + + +
Sbjct: 146 LDFYGEVRTRDKKGVTI----PSQRRYVYYYSYLLKNHLDYRPVALLFHKMMFE 195
Score = 36.4 bits (83), Expect = 0.075
Identities = 20/100 (20%), Positives = 35/100 (35%), Gaps = 7/100 (7%)
Query: 891 WPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVID 950
+ +H P L ++ S + + V +HC AG GRTG I
Sbjct: 79 VAQYPFEDHNPPQLELIKPFCEDLDQWLSEDDNHV------AAIHCKAGKGRTGVMICA- 131
Query: 951 AMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIHD 990
++ R K K + +R + V Q +++
Sbjct: 132 YLLHRGKFLKAQEALDFYGEVRTRDKKGVTIPSQRRYVYY 171
Score = 36.4 bits (83), Expect = 0.077
Identities = 21/108 (19%), Positives = 38/108 (35%), Gaps = 7/108 (6%)
Query: 1534 YVLREFKVTDARDATSRTLRQFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPIT 1593
Y L + D R + + + P + F + + + +
Sbjct: 62 YNLCAERHYDTAKFNCRVAQ----YPFEDHNPP-QLELIKPFCEDLDQWLSE-DDNHVAA 115
Query: 1594 VHCSAGVGRTGVFITLSIVLERMQYEGVIDLFQTVRILRTQRPAMVQT 1641
+HC AG GRTGV I + +L R ++ + +RT+ V
Sbjct: 116 IHCKAGKGRTGVMIC-AYLLHRGKFLKAQEALDFYGEVRTRDKKGVTI 162
>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine,
ligand-receptor complex, signaling protein-cytokin; HET:
NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1
Length = 313
Score = 38.8 bits (89), Expect = 0.013
Identities = 18/98 (18%), Positives = 33/98 (33%), Gaps = 12/98 (12%)
Query: 56 ISELSPFTTYSVNISLRAHDVSTHSMTLSWSPPIK--LNPVKYKISLDAVKEFVDSQGIT 113
+ +L P +++ S A + LSW P K ++ +G
Sbjct: 200 VVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLHINQKCEL------RHKPQRGEA 253
Query: 114 QTQIVPRRTLFLEPTETECTISELSPFTTYSVNIRRRQ 151
+V L + + L P T Y++ IR +
Sbjct: 254 SWALVGPLPL----EALQYELCGLLPATAYTLQIRCIR 287
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 38.6 bits (90), Expect = 0.014
Identities = 21/119 (17%), Positives = 38/119 (31%), Gaps = 28/119 (23%)
Query: 70 SLRAHDVSTHSMTLSWSPPIKLNP---VKYKISLDAVKEFVDSQGITQTQIVPRRTLFLE 126
++ DVS S+ L+W+ P Y + E + ++ +
Sbjct: 204 GVKVSDVSRDSVNLTWTEPASDGGSKITNYIV------EKCATTAERWLRVG-------Q 250
Query: 127 PTETECTISELSPFTTYSVNIR------RRQPRKYPESSAVTRPLMSGEIMTSHAPSDP 179
ET T+ L T+Y + +P S + P ++ E T D
Sbjct: 251 ARETRYTVINLFGKTSYQFRVIAENKFGLSKP------SEPSEPTITKEDKTRAMNYDE 303
>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain,
structural genomics., NPPSFA; NMR {Homo sapiens}
Length = 120
Score = 36.2 bits (84), Expect = 0.017
Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 15/82 (18%)
Query: 70 SLRAHDVSTHSMTLSWSPPIKLN--PV-KYKISLDAVKEFVDSQGITQTQIVPRRTLFLE 126
++ DV ++ L+W+PP + Y I + D + + ++
Sbjct: 23 IVKIEDVWGENVALTWTPPKDDGNAAITGYTI------QKADKKSMEWFTVIEH------ 70
Query: 127 PTETECTISELSPFTTYSVNIR 148
T TI+EL Y +
Sbjct: 71 YHRTSATITELVIGNEYYFRVF 92
>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1,
NCAM-120, CD56 antigen, membra protein, glycoprotein,
structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo
sapiens}
Length = 122
Score = 36.3 bits (84), Expect = 0.019
Identities = 14/77 (18%), Positives = 27/77 (35%), Gaps = 11/77 (14%)
Query: 75 DVSTHSMTLSWSPPIKLN--PV-KYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPTETE 131
+ + + + + P P+ KYK + + ++ + E
Sbjct: 17 EPYSSTAQVQFDEPEATGGVPILKYKAE---WRAVGEEVWHSKWYDAKEAS-----MEGI 68
Query: 132 CTISELSPFTTYSVNIR 148
TI L P TTY+V +
Sbjct: 69 VTIVGLKPETTYAVRLA 85
>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R,
cytokine, glycoprotein, IM response, membrane,
phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens}
PDB: 3bpn_C*
Length = 314
Score = 38.3 bits (88), Expect = 0.020
Identities = 11/81 (13%), Positives = 20/81 (24%), Gaps = 9/81 (11%)
Query: 76 VSTHSMTLSWSPPIKLNP------VKYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPTE 129
+ + W P V+ S Q R +
Sbjct: 210 FHNDDLYVQWENPQNFISRCLFYEVEVNNSQTETHNVFYVQEAKCENPEFERNV---ENT 266
Query: 130 TECTISELSPFTTYSVNIRRR 150
+ + + P T +V IR +
Sbjct: 267 SCFMVPGVLPDTLNTVRIRVK 287
>3n0a_A Tyrosine-protein phosphatase auxilin; phosphatase-like domain, C2
domain, hydrolase; 2.20A {Bos taurus}
Length = 361
Score = 38.4 bits (88), Expect = 0.020
Identities = 18/135 (13%), Positives = 36/135 (26%), Gaps = 10/135 (7%)
Query: 657 GIPGRDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVIDL 716
P ++ Q VHC G + + + + +
Sbjct: 92 QAPSLHNLFAVCRNMYNWLLQ-NPKNVCVVHCLDGRAASSILVGAMFIFCNLYS----TP 146
Query: 717 FQTVRILRTQRPAMVQTESIEPGQQFTWDHSSMEMNKAKNRYANVIAYDHSRVILSTVDG 776
VR+L +RP + + P + + ++ K + + +S V
Sbjct: 147 GPAVRLLYAKRPGIGLS----PSHRRYLGYMC-DLLADKPYRPHFKPLTIKSITVSPVPF 201
Query: 777 IPGSDYINANYCDGY 791
YCD
Sbjct: 202 FNKQRNGCRPYCDVL 216
Score = 33.8 bits (76), Expect = 0.47
Identities = 13/88 (14%), Positives = 26/88 (29%), Gaps = 6/88 (6%)
Query: 1554 QFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVL 1613
+ WP + P ++ Q VHC G + + + +
Sbjct: 82 RVSECSWPIRQAPSL-HNLFAVCRNMYNWLLQ-NPKNVCVVHCLDGRAASSILVGAMFIF 139
Query: 1614 ERMQYEGVIDLFQTVRILRTQRPAMVQT 1641
+ VR+L +RP + +
Sbjct: 140 CNLYS----TPGPAVRLLYAKRPGIGLS 163
Score = 30.7 bits (68), Expect = 4.1
Identities = 14/99 (14%), Positives = 30/99 (30%), Gaps = 10/99 (10%)
Query: 380 WPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVID 439
+ P AP L L V ++ + + P +VHC G + +
Sbjct: 83 VSECSWPIRQAPSLHNLFAV------CRNMYNWLLQNPKNVCVVHCLDGRAASSILVGAM 136
Query: 440 AMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIH 478
+ + + L A+R + + ++
Sbjct: 137 FIFCNLYSTPGPAVR----LLYAKRPGIGLSPSHRRYLG 171
Score = 30.7 bits (68), Expect = 4.1
Identities = 14/99 (14%), Positives = 30/99 (30%), Gaps = 10/99 (10%)
Query: 891 WPDHGVPEHPAPFLLFLRRVRAMNPGTNSLESSGVNLPVGPLIVHCSAGVGRTGCFIVID 950
+ P AP L L V ++ + + P +VHC G + +
Sbjct: 83 VSECSWPIRQAPSLHNLFAV------CRNMYNWLLQNPKNVCVVHCLDGRAASSILVGAM 136
Query: 951 AMIERIKHDKTVDIYGHVTCLRAQRNYMVQTEDQYMFIH 989
+ + + L A+R + + ++
Sbjct: 137 FIFCNLYSTPGPAVR----LLYAKRPGIGLSPSHRRYLG 171
>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes
(CDON)binding...; fibronectin type III, FN3; NMR {Mus
musculus} SCOP: b.1.2.1
Length = 121
Score = 35.8 bits (83), Expect = 0.022
Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 19/80 (23%)
Query: 70 SLRAHDVSTHSMTLSWSP------PIKLNPVKYKISLDAVKEFVDSQGITQTQIVPRRTL 123
S S+ ++W P PI+ +++ + K I T +P
Sbjct: 23 RPTISTASETSVYVTWIPRGNGGFPIQ----SFRV--EYKKLKKVGDWILATSAIP---- 72
Query: 124 FLEPTETECTISELSPFTTY 143
P+ I+ L +Y
Sbjct: 73 ---PSRLSVEITGLEKGISY 89
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.1 bits (82), Expect = 0.031
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 21/47 (44%)
Query: 368 ERREIKQLQFT----AWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLE 410
E++ +K+LQ + A D AP L A+ ++E
Sbjct: 18 EKQALKKLQASLKLYA-DD------SAPAL-------AIKA---TME 47
Score = 36.1 bits (82), Expect = 0.031
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 21/47 (44%)
Query: 879 ERREIKQLQFT----AWPDHGVPEHPAPFLLFLRRVRAMNPGTNSLE 921
E++ +K+LQ + A D AP L A+ ++E
Sbjct: 18 EKQALKKLQASLKLYA-DD------SAPAL-------AIKA---TME 47
Score = 31.1 bits (69), Expect = 1.9
Identities = 7/28 (25%), Positives = 15/28 (53%), Gaps = 6/28 (21%)
Query: 1296 KTEFKKL-SNIR-----AEPSRFISASL 1317
K KKL ++++ + P+ I A++
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKATM 46
>1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 120
Score = 35.2 bits (81), Expect = 0.040
Identities = 9/74 (12%), Positives = 25/74 (33%), Gaps = 8/74 (10%)
Query: 76 VSTHSMTLSWSPPIKLNPVK-YKISLDAVKEFVDSQGITQTQIVPRRTLFLEPTETECTI 134
++ ++ ++W+ + ++ Y++ + PTE +
Sbjct: 27 LTPTTVQVTWTVDRQPQFIQGYRVMYRQTSGLQATSSWQNLDAK-------VPTERSAVL 79
Query: 135 SELSPFTTYSVNIR 148
L TY + +R
Sbjct: 80 VNLKKGVTYEIKVR 93
>2erj_C Cytokine receptor common gamma chain; immune system-cytok complex;
HET: NAG FUC BMA; 3.00A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1
Length = 247
Score = 36.7 bits (84), Expect = 0.051
Identities = 9/82 (10%), Positives = 29/82 (35%), Gaps = 13/82 (15%)
Query: 69 ISLRAHDVSTHSMTLSWSPPIKLNPVKYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPT 128
+L H +S + L+W+ + +++ + ++ + T+
Sbjct: 141 ENLTLHKLSESQLELNWNNRFLNHCLEHLV------QYRTDWDHSWTEQSV-------DY 187
Query: 129 ETECTISELSPFTTYSVNIRRR 150
+ ++ + Y+ +R R
Sbjct: 188 RHKFSLPSVDGQKRYTFRVRSR 209
Score = 31.3 bits (70), Expect = 2.2
Identities = 7/41 (17%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 50 TETECTISELSPFTTYSVNISLRAHDVSTHSMTLS-WSPPI 89
+ ++ + Y+ + R + + + S WS PI
Sbjct: 187 YRHKFSLPSVDGQKRYTFRVRSRFNPLCGSAQHWSEWSHPI 227
>3rgo_A Protein-tyrosine phosphatase mitochondrial 1; phosphatidylglycerol
phosphate (PGP) phosphatase, hydrolase; 1.93A {Mus
musculus} PDB: 3rgq_A*
Length = 157
Score = 35.4 bits (82), Expect = 0.052
Identities = 13/88 (14%), Positives = 24/88 (27%), Gaps = 23/88 (26%)
Query: 1570 DGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIV---LERMQYEGVIDLFQ 1626
+ F + + VHC AG R+ ++V L +Q +
Sbjct: 76 HKGVQFALKYQA------LGQCVYVHCKAGRSRSA-----TMVAAYL--IQVHN-WSPEE 121
Query: 1627 TVRILRTQRPAMVQTEHLYTSSPFSEQL 1654
+ + R + E L
Sbjct: 122 AIEAIAKIRSHISIRPS------QLEVL 143
Score = 35.4 bits (82), Expect = 0.053
Identities = 12/84 (14%), Positives = 22/84 (26%), Gaps = 23/84 (27%)
Query: 662 DGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIV---LERMQYEGVIDLFQ 718
+ F + + VHC AG R+ ++V L +Q +
Sbjct: 76 HKGVQFALKYQA------LGQCVYVHCKAGRSRSA-----TMVAAYL--IQVHN-WSPEE 121
Query: 719 TVRILRTQRPAMVQTESIEPGQQF 742
+ + R I
Sbjct: 122 AIEAIAKIRS------HISIRPSQ 139
Score = 30.4 bits (69), Expect = 3.1
Identities = 8/37 (21%), Positives = 16/37 (43%)
Query: 1729 GPLIVHCSAGVGRTGCFIVIDAKEQYQFCYHAALEYL 1765
+ VHC AG R+ + + + + A+E +
Sbjct: 90 QCVYVHCKAGRSRSATMVAAYLIQVHNWSPEEAIEAI 126
Score = 29.7 bits (67), Expect = 4.9
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 419 GPLIVHCSAGVGRTGCFIV 437
+ VHC AG R+ +
Sbjct: 90 QCVYVHCKAGRSRSATMVA 108
Score = 29.7 bits (67), Expect = 4.9
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 930 GPLIVHCSAGVGRTGCFIV 948
+ VHC AG R+ +
Sbjct: 90 QCVYVHCKAGRSRSATMVA 108
>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens}
SCOP: b.1.2.1
Length = 112
Score = 34.6 bits (80), Expect = 0.058
Identities = 21/112 (18%), Positives = 35/112 (31%), Gaps = 28/112 (25%)
Query: 75 DVSTHSMTLSWSPPIKLN--PVK-YKISLDAVKEFVDSQGITQTQIVPRRTLFLEPTETE 131
+++ H++TL W+ P + Y + E D + E E
Sbjct: 21 NITRHTVTLKWAKPEYTGGFKITSYIV------EKRDLPNGRWLKANFSNI-----LENE 69
Query: 132 CTISELSPFTTYSVNIRRRQPRKYPESSAVTRPLMSGEIMTSHAPSDPVEMR 183
T+S L+ Y + A +G I PSD + R
Sbjct: 70 FTVSGLTEDAAYEFRVI-----------AKNA---AGAISPPSEPSDAITCR 107
>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic
receptor, signal transduction cytokine; HET: NAG; 2.80A
{Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A
1gcf_A
Length = 215
Score = 36.0 bits (82), Expect = 0.061
Identities = 11/93 (11%), Positives = 27/93 (29%), Gaps = 12/93 (12%)
Query: 60 SPFTTYSVNISLRAHDVSTHSMTLSWSPPIKLN--PVKYKISLDAVKEFVDSQGITQTQI 117
P +++I + LSW P + ++ + +
Sbjct: 110 EPPMLQALDIGPDVVSHQPGCLWLSWKPWKPSEYMEQECEL------RYQPQLKGANWTL 163
Query: 118 VPRRTLFLEPTETECTISELSPFTTYSVNIRRR 150
V L ++ + + L Y++ +R
Sbjct: 164 VF----HLPSSKDQFELCGLHQAPVYTLQMRCI 192
Score = 32.9 bits (74), Expect = 0.65
Identities = 14/107 (13%), Positives = 33/107 (30%), Gaps = 7/107 (6%)
Query: 75 DVSTHSMTLSWSPPIKLN-PVKYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPTETECT 133
++T+S+ W P + + P + + + QG T V ++
Sbjct: 16 HLTTNSLVCQWEPGPETHLPTSFILKSFRSRADCQYQGDTIPDCVAKKR----QNNCSIP 71
Query: 134 ISELSPFTTYSVNIRRRQPRKYPESSAVTRPLMSGEIMTSHAPSDPV 180
L + ++ ++ ES + M ++ P
Sbjct: 72 RKNLLLYQYMAIWVQAENMLGSSESPKLCLDPMD--VVKLEPPMLQA 116
>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III
module, beta-sheet sandwich, cell membrane,
glycoprotein, immunoglobulin domain; NMR {Homo sapiens}
Length = 114
Score = 34.4 bits (79), Expect = 0.066
Identities = 16/85 (18%), Positives = 23/85 (27%), Gaps = 21/85 (24%)
Query: 70 SLRAHDVSTHSMTLSWSP------PIKLNPVKYKISLDAVKEFVDSQGITQTQIVPRRTL 123
S+ S S LS + PI VKY+ D + + V
Sbjct: 13 SIHGQPSSGKSFKLSITKQDDGGAPILEYIVKYRSK--------DKEDQWLEKKVQ---- 60
Query: 124 FLEPTETECTISELSPFTTYSVNIR 148
+ + L Y V I
Sbjct: 61 ---GNKDHIILEHLQWTMGYEVQIT 82
>2b5i_C Cytokine receptor common gamma chain; four-helix bundle,
fibronectin domain, cytokine-cytokine REC complex; HET:
NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB:
3bpl_C* 3qb7_C* 3qaz_C*
Length = 199
Score = 35.9 bits (82), Expect = 0.071
Identities = 13/129 (10%), Positives = 39/129 (30%), Gaps = 41/129 (31%)
Query: 48 EPTETECTI--SELSPFTTYSVNI--------------------------SLRAHDVSTH 79
E + C + E+ + T+ V + +L H +S
Sbjct: 54 EEITSGCQLQKKEIHLYQTFVVQLQDPREPRRQATQMLKLQNLVIPWAPENLTLHKLSES 113
Query: 80 SMTLSWSPPIKLNPVKYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPTETECTISELSP 139
+ L+W+ + +++ + ++ + T+ + ++ +
Sbjct: 114 QLELNWNNRFLNHCLEHLV------QYRTDWDHSWTEQSV-------DYRHKFSLPSVDG 160
Query: 140 FTTYSVNIR 148
Y+ +R
Sbjct: 161 QKRYTFRVR 169
Score = 31.3 bits (70), Expect = 2.0
Identities = 7/42 (16%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 49 PTETECTISELSPFTTYSVNISLRAHDVSTHSMTLS-WSPPI 89
+ ++ + Y+ + R + + + S WS PI
Sbjct: 148 DYRHKFSLPSVDGQKRYTFRVRSRFNPLCGSAQHWSEWSHPI 189
>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains
of fibronectin-III domains, FOU fibronectin-III domains
PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A*
3cxe_A* 1egj_A* 1c8p_A
Length = 419
Score = 36.1 bits (82), Expect = 0.100
Identities = 15/120 (12%), Positives = 30/120 (25%), Gaps = 29/120 (24%)
Query: 50 TETECTI--SELSPFTTYSVNISLRAHD-------------------VSTHSMTLSWSPP 88
T C I + + Y V++ R + S +L W
Sbjct: 284 TRHHCQIPVPDPATHGQYIVSVQPRRAEKHIKSSVNIQMAPPSLQVTKDGDSYSLRWETM 343
Query: 89 IKLNPVKYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPTETECTISELSPFTTYSVNIR 148
++ + ++T+ + + L P T Y +R
Sbjct: 344 KMRYEHIDHTFEIQYRKDTATWKDSKTETLQ--------NAHSMALPALEPSTRYWARVR 395
Score = 31.1 bits (69), Expect = 3.3
Identities = 16/80 (20%), Positives = 23/80 (28%), Gaps = 3/80 (3%)
Query: 71 LRAHDVSTHSMTLSWSPPIKLNPVKYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPTET 130
L+ H L+WS L + EF Q L ++
Sbjct: 115 LQISTDQDH-FLLTWSVA--LGSPQSHWLSPGDLEFEVVYKRLQDSWEDAAILLSNTSQA 171
Query: 131 ECTISELSPFTTYSVNIRRR 150
L P +TY +R R
Sbjct: 172 TLGPEHLMPSSTYVARVRTR 191
Score = 30.3 bits (67), Expect = 6.2
Identities = 7/40 (17%), Positives = 12/40 (30%)
Query: 50 TETECTISELSPFTTYSVNISLRAHDVSTHSMTLSWSPPI 89
+ L P T Y + +R + + WS
Sbjct: 375 NAHSMALPALEPSTRYWARVRVRTSRTGYNGIWSEWSEAR 414
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 35.6 bits (81), Expect = 0.13
Identities = 14/103 (13%), Positives = 35/103 (33%), Gaps = 23/103 (22%)
Query: 57 SELSPFTTYSV-------NISLRAHDVSTHSMTLSWSPPIKLN----PVKYKISLDAVKE 105
S+ F + NI++ A + ++++W P N +++++ A +
Sbjct: 184 SKTQTFQGCGILQPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERS 243
Query: 106 FVDSQGITQTQIVPRRTLFLEPTETECTISELSPFTTYSVNIR 148
T ++ + C I + + V +R
Sbjct: 244 ------------KTFTTWMVKDLQHHCVIHDAWSGLRHVVQLR 274
Score = 31.0 bits (69), Expect = 3.2
Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 3/75 (4%)
Query: 43 RTLFLEPTETECTISELSPFTTYSVNISLRAHDVSTHSMTLSWSPPIKLNPVKYKISLDA 102
T ++ + C I + + V + RA + WSP P S A
Sbjct: 247 TTWMVKDLQHHCVIHDAWSGLRHVVQL--RAQEEFGQGEWSEWSPEAMGTPWTESRSPPA 304
Query: 103 VKE-FVDSQGITQTQ 116
E Q +T +
Sbjct: 305 ENEVSTPMQALTTNK 319
>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM
related cell adhesion molecule, fibronectin type III
domain, structural genomics; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 127
Score = 33.5 bits (77), Expect = 0.18
Identities = 21/118 (17%), Positives = 34/118 (28%), Gaps = 24/118 (20%)
Query: 70 SLRAHDVSTHSMTLSWSPPIKLN-PV-KYKISLDAVKEFVDSQGITQTQIVPRRTLFLEP 127
L D S+ LSW+P N P+ K+ I E+ D+
Sbjct: 22 DLELTDQLDKSVQLSWTPGDDNNSPITKFII------EYEDAMHKPGLWHHQTEV----S 71
Query: 128 TETECTISELSPFTTYSVNIR------RRQPRKYPESSAVTRPLMSGEIMTSHAPSDP 179
LSP+ YS + + P S + ++ P+
Sbjct: 72 GTQTTAQLNLSPYVNYSFRVMAVNSIGKSLP------SEASEQYLTKASEPDKNPTSG 123
>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling
complex, extracellular space, IM system receptor; HET:
NAG; 3.50A {Homo sapiens} PDB: 3se3_A*
Length = 414
Score = 35.4 bits (80), Expect = 0.19
Identities = 42/340 (12%), Positives = 94/340 (27%), Gaps = 49/340 (14%)
Query: 50 TETEC--TISELSPFTTYSVNISLRAHDVSTHSMTLSWS---------PPIKLNPVKYKI 98
T T+C + +L+ + + I + S+ S++ P + L I
Sbjct: 61 TSTKCNFSSLKLNVYEEIKLRIRAEKENTSSWYEVDSFTPFRKAQIGPPEVHLEAEDKAI 120
Query: 99 SLDAVKEFVDSQGITQTQIV-----------PRRTLFLEPTETECTISELSPFTTYSVNI 147
+ DS + +E + I +LSP TTY + +
Sbjct: 121 VIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEERIENIYSRHKIYKLSPETTYCLKV 180
Query: 148 RRRQPRKYPESSAVTRPLMSGEIMTSHAPSDPVEMRRLNFQTPGMVSHPPIPISRLAQHI 207
+ + + + P + +E+ N + ++ Q +
Sbjct: 181 KAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKWDYTYANMTFQVQWL 240
Query: 208 ENLKANDNLKFSQEYESIEPGQQFTWDHSSMEMNKAKNR--YANVIAYDHSRVILSTVDG 265
+ +++ I + N + V A D +
Sbjct: 241 HAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNT------- 293
Query: 266 IPGSDYINANYCDGYRKHNAYVATQGPLQ--ETLGDFWRMVWE--LRSVTIVMMTKLEER 321
S + D P+ +L D + + +S ++
Sbjct: 294 ---SFWSEEIKFDTEI----QAFLLPPVFNIRSLSDSFHIYIGAPKQSGNTPVIQDYPLI 346
Query: 322 TRIKCDQYWPSRGTETY----GHITVTLQDVQELASYCIR 357
I +W + VT+ +++ L YC++
Sbjct: 347 YEI---IFWENTSNAERKIIEKKTDVTVPNLKPLTVYCVK 383
Score = 34.2 bits (77), Expect = 0.44
Identities = 18/140 (12%), Positives = 34/140 (24%), Gaps = 27/140 (19%)
Query: 50 TETECTIS-ELSPFTTYSVNISLRAHDVSTHS------------MTLSWSPPIKLNPVKY 96
T+C + Y + + +A D + S P + +
Sbjct: 265 KTTQCVFPQNVFQKGIYLLRV--QASDGNNTSFWSEEIKFDTEIQAFLLPPVFNIRSLSD 322
Query: 97 KISLDAVKEFVDSQGITQTQIVPRRTLF-----------LEPTETECTISELSPFTTYSV 145
+ + + +T+ T+ L P T Y V
Sbjct: 323 SFHIYIGAPKQSGNTPVIQDYPLIYEIIFWENTSNAERKIIEKKTDVTVPNLKPLTVYCV 382
Query: 146 NIR-RRQPRKYPESSAVTRP 164
R K +SS +
Sbjct: 383 KARAHTMDEKLNKSSVFSDA 402
>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, cell adhesion; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 108
Score = 33.0 bits (75), Expect = 0.23
Identities = 13/78 (16%), Positives = 20/78 (25%), Gaps = 17/78 (21%)
Query: 75 DVSTHSMTLSWSPPIKLN-PVK-YKISLDAVKEFVDSQG--ITQTQIVPRRTLFLEPTET 130
+ + L W PP + + Y + E V TET
Sbjct: 17 VRTPRGVLLHWDPPELVPKRLDGYVL------EGRQGSQGWEVLDPAVA-------GTET 63
Query: 131 ECTISELSPFTTYSVNIR 148
E + L Y +
Sbjct: 64 ELLVPGLIKDVLYEFRLV 81
>1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic
cytokine, cytokine receptor class 1, complex
(cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A
Length = 227
Score = 34.3 bits (78), Expect = 0.24
Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 9/84 (10%)
Query: 67 VNISLRAHDVSTHSMTLSWSPPIKLNPVKYKISLDAVKEFVDSQGITQTQIVPRRTLFLE 126
V + R D + + L W PP P+ I + + QG Q V +
Sbjct: 126 VGLVARLAD-ESGHVVLRWLPP-PETPMTSHIRYE--VDVSAGQGAGSVQRVE-----IL 176
Query: 127 PTETECTISELSPFTTYSVNIRRR 150
TEC +S L T Y+ +R R
Sbjct: 177 EGRTECVLSNLRGRTRYTFAVRAR 200
Score = 32.0 bits (72), Expect = 1.4
Identities = 12/40 (30%), Positives = 17/40 (42%)
Query: 50 TETECTISELSPFTTYSVNISLRAHDVSTHSMTLSWSPPI 89
TEC +S L T Y+ + R + S WS P+
Sbjct: 178 GRTECVLSNLRGRTRYTFAVRARMAEPSFGGFWSEWSEPV 217
>1iar_B Protein (interleukin-4 receptor alpha chain); cytokine
receptor,interleukin-4, cytokine/receptor complex; 2.30A
{Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_B*
3bpn_B* 3bpo_B*
Length = 207
Score = 34.2 bits (78), Expect = 0.26
Identities = 12/79 (15%), Positives = 23/79 (29%), Gaps = 4/79 (5%)
Query: 70 SLRAHDVSTHSMTLSWSPPIKLNPVKYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPTE 129
+L H + ++ L+WS P + Y + V+ +
Sbjct: 103 NLTVHTNVSDTLLLTWSNPYPPDNYLYNH----LTYAVNIWSENDPADFRIYNVTYLEPS 158
Query: 130 TECTISELSPFTTYSVNIR 148
S L +Y +R
Sbjct: 159 LRIAASTLKSGISYRARVR 177
>4doh_B Interleukin-20 receptor subunit beta; IL10 family cytokine receptor
complex, alpha helical cytokin beta sandwhich receptor
fold, signaling complex; HET: NAG; 2.80A {Homo sapiens}
Length = 206
Score = 33.9 bits (77), Expect = 0.34
Identities = 12/116 (10%), Positives = 34/116 (29%), Gaps = 19/116 (16%)
Query: 50 TETECTIS-ELSPFTTYSVNISLRAHDVSTHS------------MTLSWSPPIKLNPVKY 96
EC ++ +++ Y++ + RA S S T+ P +++ +
Sbjct: 65 EGPECDVTDDITATVPYNLRV--RATLGSQTSAWSILKHPFNRQSTILTRPGMEITKDGF 122
Query: 97 KISLDAVKEFVDSQG----ITQTQIVPRRTLFLEPTETECTISELSPFTTYSVNIR 148
+ ++ + + + + + P Y V +
Sbjct: 123 HLVIELEDLGPQFEFLVAYWRREPGAEEHVKMVRSGGIPVHLETMEPGAAYCVKAQ 178
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 33.3 bits (76), Expect = 0.48
Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 11/77 (14%)
Query: 75 DVSTHSMTLSWSPPIKLN--PV-KYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPTETE 131
+ + + + + P P+ KYK V + + E
Sbjct: 123 EPYSSTAQVQFDEPEATGGVPILKYKAE----WRAVGEEVWHSKWYDAKEA----SMEGI 174
Query: 132 CTISELSPFTTYSVNIR 148
TI L P TTY+V +
Sbjct: 175 VTIVGLKPETTYAVRLA 191
>3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor,
antibody FAB F immunoglobulin fold; HET: NAG; 1.95A
{Homo sapiens}
Length = 206
Score = 33.1 bits (75), Expect = 0.54
Identities = 14/135 (10%), Positives = 35/135 (25%), Gaps = 40/135 (29%)
Query: 46 FLEPTETECTISELSPFTTYSVNI----------------------------SLRAHDV- 76
EC + + Y++ I S++A
Sbjct: 63 LQSDGFYECIFQPIFLLSGYTMWIRINHSLGSLDSPPTCVLPDSVVKPLPPSSVKAEITI 122
Query: 77 STHSMTLSWSPPIKL-NPVKYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPTETECTIS 135
+ + +SW P+ N ++++I ++ ++
Sbjct: 123 NIGLLKISWEKPVFPENNLQFQIR---YGLSGKEVQWKMYEVYD-------AKSKSVSLP 172
Query: 136 ELSPFTTYSVNIRRR 150
Y+V +R +
Sbjct: 173 VPDLCAVYAVQVRCK 187
>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity
phosphatase, carbohydrate BIND hydrolase; 2.40A
{Arabidopsis thaliana}
Length = 294
Score = 32.8 bits (74), Expect = 0.84
Identities = 15/97 (15%), Positives = 35/97 (36%), Gaps = 6/97 (6%)
Query: 1554 QFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTG-VFITLSIV 1612
+ ++ D+ + + + +K ++ G G VH +AG+GR V +T
Sbjct: 76 RCEIRDFDAFDLRMRLPAVVGTL---YKAVKRNG--GVTYVHSTAGMGRAPAVALTYMFW 130
Query: 1613 LERMQYEGVIDLFQTVRILRTQRPAMVQTEHLYTSSP 1649
++ + L + R + A+ +
Sbjct: 131 VQGYKLMEAHKLLMSKRSCFPKLDAIRNATIDILTGL 167
Score = 31.3 bits (70), Expect = 2.7
Identities = 12/58 (20%), Positives = 20/58 (34%), Gaps = 6/58 (10%)
Query: 1713 FILKSSLESSGVNLPVGPLIVHCSAGVGRTGCFIVIDAKEQYQFCYHAALEYLGSFDH 1770
+ K+ + GV VH +AG+GR + + A + L S
Sbjct: 97 TLYKAVKRNGGVTY------VHSTAGMGRAPAVALTYMFWVQGYKLMEAHKLLMSKRS 148
Score = 29.7 bits (66), Expect = 9.5
Identities = 20/156 (12%), Positives = 46/156 (29%), Gaps = 19/156 (12%)
Query: 592 CSRLAQHIENLKAND-----NLKFSQEYESIEPGQQFTWDHSSMEMNKAKNRYANVIAYD 646
C + + ++ L+ L+ + E ++ + ++ D
Sbjct: 25 CLQTPEDVDKLRKIGVKTIFCLQQDPDLEYFGVDISSIQAYAKKYSDI---QHIRCEIRD 81
Query: 647 HSRVILSTVDGIPGRDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTG-VFITLSIVL 705
D + + +K ++ G G VH +AG+GR V +T +
Sbjct: 82 FD-----AFDLRMRLPAVVGTL---YKAVKRNG--GVTYVHSTAGMGRAPAVALTYMFWV 131
Query: 706 ERMQYEGVIDLFQTVRILRTQRPAMVQTESIEPGQQ 741
+ + L + R + A+
Sbjct: 132 QGYKLMEAHKLLMSKRSCFPKLDAIRNATIDILTGL 167
>3tgx_A Interleukin-21 receptor; class I cytokine, class I cytokine
receptor, sugarbridge, fibronectine domain, signaling,
cytokine-cytokine receptor; HET: MAN FUL NAG BMA FUC;
2.80A {Homo sapiens}
Length = 219
Score = 32.4 bits (73), Expect = 1.0
Identities = 10/76 (13%), Positives = 24/76 (31%), Gaps = 2/76 (2%)
Query: 76 VSTHSMTLSWSPPIKLNPVKYKISLDAVKEF-VDSQGITQTQIVPRRTLFLEPTETECTI 134
+ +SW +P Y + E ++G R+ + ++
Sbjct: 110 TFSGQYQISWRSDY-EDPAFYMLKGKLQYELQYRNRGDPWAVSPRRKLISVDSRSVSLLP 168
Query: 135 SELSPFTTYSVNIRRR 150
E ++Y + +R
Sbjct: 169 LEFRKDSSYELQVRAG 184
Score = 31.7 bits (71), Expect = 1.5
Identities = 10/60 (16%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 31 SQGITQTQIVPRRTLFLEPTETECTISELSPFTTYSVNISLRAHDVSTHSMTLS-WSPPI 89
++G R+ + ++ E ++Y + + S++ T S WS P+
Sbjct: 143 NRGDPWAVSPRRKLISVDSRSVSLLPLEFRKDSSYELQVRAGPMPGSSYQGTWSEWSDPV 202
>1xri_A AT1G05000; structural genomics, protein structure initiative, CESG
for eukaryotic structural genomics, phosphoprote
phosphatase; 3.30A {Arabidopsis thaliana} SCOP: c.45.1.1
PDB: 2q47_A
Length = 151
Score = 31.6 bits (71), Expect = 1.1
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 680 QDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVIDLFQ 718
++ P+ +HC G RTG + L++ + D +Q
Sbjct: 91 KNHPVLIHCKRGKHRTGCLVGCLRKLQKWCLTSIFDEYQ 129
Score = 31.6 bits (71), Expect = 1.1
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 1588 QDGPITVHCSAGVGRTGVFITLSIVLERMQYEGVIDLFQ 1626
++ P+ +HC G RTG + L++ + D +Q
Sbjct: 91 KNHPVLIHCKRGKHRTGCLVGCLRKLQKWCLTSIFDEYQ 129
Score = 31.6 bits (71), Expect = 1.2
Identities = 10/40 (25%), Positives = 17/40 (42%)
Query: 419 GPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVT 458
P+++HC G RTGC + +++ D Y
Sbjct: 93 HPVLIHCKRGKHRTGCLVGCLRKLQKWCLTSIFDEYQRFA 132
Score = 31.6 bits (71), Expect = 1.2
Identities = 10/40 (25%), Positives = 17/40 (42%)
Query: 930 GPLIVHCSAGVGRTGCFIVIDAMIERIKHDKTVDIYGHVT 969
P+++HC G RTGC + +++ D Y
Sbjct: 93 HPVLIHCKRGKHRTGCLVGCLRKLQKWCLTSIFDEYQRFA 132
Score = 29.7 bits (66), Expect = 4.8
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 1729 GPLIVHCSAGVGRTGCFIVIDAKEQYQFCYHAALEY 1764
P+++HC G RTGC + K Q EY
Sbjct: 93 HPVLIHCKRGKHRTGCLVGCLRKLQKWCLTSIFDEY 128
>3top_A Maltase-glucoamylase, intestinal; membrane, hydrolase-hydrolase
inhibitor complex; HET: ACR; 2.88A {Homo sapiens} PDB:
3ton_A*
Length = 908
Score = 33.0 bits (75), Expect = 1.2
Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 5/77 (6%)
Query: 1010 ITRKDDPTVSLQDPYIAAKFSQRNIPYTFHLGNGQTY-----EGFVNKKLVRGLKYRIFV 1064
I RK T+ + FS I + L + Y E ++ + + +F
Sbjct: 145 IRRKSTGTIIWDSQLLGFTFSDMFIRISTRLPSKYLYGFGETEHRSYRRDLEWHTWGMFS 204
Query: 1065 RAIVDTPQKHLYTSSPF 1081
R +K+ Y P+
Sbjct: 205 RDQPPGYKKNSYGVHPY 221
>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy,
decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo
sapiens} PDB: 3lb6_D*
Length = 380
Score = 32.5 bits (73), Expect = 1.3
Identities = 14/134 (10%), Positives = 29/134 (21%), Gaps = 48/134 (35%)
Query: 48 EPTETECTI--SELSPFTTYSVNI----------------------------SLRAHDVS 77
+ C E S + + + + L S
Sbjct: 191 DGQNIGCRFPYLEASDYKDFYICVNGSSENKPIRSSYFTFQLQNIVKPLPPVYLTFTRES 250
Query: 78 THSMTLSWSPPIKLNPV---KYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPTETECTI 134
+ + L WS P+ P Y+I + + + T+
Sbjct: 251 SCEIKLKWSIPLGPIPARCFDYEI---------------EIREDDTTLVTATVENETYTL 295
Query: 135 SELSPFTTYSVNIR 148
+ +R
Sbjct: 296 KTTNETRQLCFVVR 309
>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine,
hormone-hormone recep complex; 2.00A {Homo sapiens} PDB:
3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B
3ew3_B 3npz_B 1f6f_B 2lfg_A
Length = 210
Score = 31.6 bits (71), Expect = 1.5
Identities = 14/88 (15%), Positives = 27/88 (30%), Gaps = 7/88 (7%)
Query: 61 PFTTYSVNISLRAHDVSTHSMTLSWSPPIKLNPVKYKISLDAVKEFVDSQGITQTQIVPR 120
P + + ++ + + + WSPP ++ +L +
Sbjct: 103 PDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEIHFA- 161
Query: 121 RTLFLEPTETECTISELSPFTTYSVNIR 148
+TE I L P Y V +R
Sbjct: 162 ------GQQTEFKILSLHPGQKYLVQVR 183
>1uc6_A CNTF receptor, ciliary neurotrophic factor receptor alpha;
cytokine, leukemia inhibitory factor, cytokine receptor;
NMR {Homo sapiens} SCOP: b.1.2.1
Length = 109
Score = 30.3 bits (68), Expect = 1.8
Identities = 11/87 (12%), Positives = 26/87 (29%), Gaps = 18/87 (20%)
Query: 67 VNISLRAHDVSTHSMTLSWSPPIKLN-----PVKYKISLDAVKEFVDSQGITQTQIVPRR 121
N+ R + + ++W P P+K+ + + I+ +
Sbjct: 12 ENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRY-------------RPLILDQW 58
Query: 122 TLFLEPTETECTISELSPFTTYSVNIR 148
T TI++ Y + +
Sbjct: 59 QHVELSNGTAHTITDAYAGKEYIIQVA 85
Score = 28.8 bits (64), Expect = 6.1
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 51 ETECTISELSPFTTYSVNISLRAHDVSTHSMTLSWSPPIKLNP 93
T TI++ Y + ++ + +++ T S WS P
Sbjct: 66 GTAHTITDAYAGKEYIIQVAAKDNEIGTWS---DWSVAAHATP 105
>1axi_B HGHBP, growth hormone receptor; complex (hormone-receptor), complex
(hormone-receptor) compl; 2.10A {Homo sapiens} SCOP:
b.1.2.1 b.1.2.1 PDB: 1a22_B 1kf9_B 1hwg_B 1hwh_B 3hhr_B
2aew_A
Length = 236
Score = 31.3 bits (70), Expect = 2.3
Identities = 11/88 (12%), Positives = 25/88 (28%), Gaps = 7/88 (7%)
Query: 61 PFTTYSVNISLRAHDVSTHSMTLSWSPPIKLNPVKYKISLDAVKEFVDSQGITQTQIVPR 120
P + + + + + W P + K + L+ ++ + + P
Sbjct: 133 PPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNETKWKMMDPI 192
Query: 121 RTLFLEPTETECTISELSPFTTYSVNIR 148
T + L Y V +R
Sbjct: 193 L-------TTSVPVYSLKVDKEYEVRVR 213
Score = 29.8 bits (66), Expect = 6.5
Identities = 5/40 (12%), Positives = 12/40 (30%), Gaps = 3/40 (7%)
Query: 50 TETECTISELSPFTTYSVNISLRAHDVSTHSMTLSWSPPI 89
T + L Y V + + + + +S +
Sbjct: 193 LTTSVPVYSLKVDKEYEVRVRSKQRNSGNYG---EFSEVL 229
>4doh_R Interleukin-20 receptor subunit alpha; IL10 family cytokine
receptor complex, alpha helical cytokin beta sandwhich
receptor fold, signaling complex; HET: NAG; 2.80A {Homo
sapiens}
Length = 221
Score = 31.4 bits (70), Expect = 2.4
Identities = 14/96 (14%), Positives = 29/96 (30%), Gaps = 1/96 (1%)
Query: 54 CTISELSPFTTYSVNISLRAHDVSTHSMTLSWSPPIKLNPVKYKISLDAVKEFVDSQGIT 113
PF + A S+++ + P K + + + + + +
Sbjct: 96 AESGRFYPFLETQIGPPEVALTTDEKSISVVLTAPEKWKRNPEDLPVSMQQIYSNLKYNV 155
Query: 114 QTQIVP-RRTLFLEPTETECTISELSPFTTYSVNIR 148
RT T ++ L P T Y V++
Sbjct: 156 SVLNTKSNRTWSQCVTNHTLVLTWLEPNTLYCVHVE 191
Score = 31.0 bits (69), Expect = 2.7
Identities = 12/107 (11%), Positives = 29/107 (27%), Gaps = 7/107 (6%)
Query: 50 TETECTISE--LSPFTTYSVNISLRAHDVSTHSMTLSWSPPIKLNPVKYKISLDAVKEFV 107
T C +S Y + RA + S W+ + P
Sbjct: 63 NRTYCDLSAETSDYEHQYYARV--RAIWGTKCS---KWAESGRFYPFLETQIGPPEVALT 117
Query: 108 DSQGITQTQIVPRRTLFLEPTETECTISELSPFTTYSVNIRRRQPRK 154
+ + P + ++ ++ Y+V++ + +
Sbjct: 118 TDEKSISVVLTAPEKWKRNPEDLPVSMQQIYSNLKYNVSVLNTKSNR 164
Score = 29.8 bits (66), Expect = 6.7
Identities = 23/137 (16%), Positives = 40/137 (29%), Gaps = 16/137 (11%)
Query: 68 NISLRAHDVSTHSMTLSWSPPIKLNPVKYKISLDAVKEFVDSQGITQTQIVPRRTLFLEP 127
NI+ + ++ L W+PP L VK + V+ F+ Q + R
Sbjct: 14 NITFLSINMKN---VLQWTPPEGLQGVKVTYT---VQYFIYGQKKWLNKSECRNI----- 62
Query: 128 TETECTISE--LSPFTTYSVNIRRRQPRKYPESSAVTRPLMSGEIMTSHAPSDPVEMRRL 185
T C +S Y +R K + + R E V +
Sbjct: 63 NRTYCDLSAETSDYEHQYYARVRAIWGTKCSKWAESGRFYPFLETQIGP---PEVALTTD 119
Query: 186 NFQTPGMVSHPPIPISR 202
+++ P
Sbjct: 120 EKSISVVLTAPEKWKRN 136
Score = 29.4 bits (65), Expect = 8.8
Identities = 9/48 (18%), Positives = 14/48 (29%), Gaps = 3/48 (6%)
Query: 42 RRTLFLEPTETECTISELSPFTTYSVNISLRAHDVSTHSMTLSWSPPI 89
RT T ++ L P T Y V++ + S
Sbjct: 163 NRTWSQCVTNHTLVLTWLEPNTLYCVHVESFVPGPPRRAQ---PSEKQ 207
>1fyh_B Interferon-gamma receptor alpha chain; cytokine-receptor complex,
fibronectin type-III, immune system; 2.04A {Homo
sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1fg9_C 1jrh_I
Length = 229
Score = 30.5 bits (68), Expect = 3.6
Identities = 23/210 (10%), Positives = 65/210 (30%), Gaps = 29/210 (13%)
Query: 68 NISLRAHDVSTHSMTLSWSPPIKLNPVKYKISLDAVKEFVDSQGITQTQIVPRRTLFLEP 127
N+++ +++++ + W I + V+ ++
Sbjct: 17 NVTIESYNMNP---IVYWEYQIMPQVPVF-----TVEVKNYGVKNSEWIDACINI----- 63
Query: 128 TETECTISELSPFTTYSVNIRRRQPRKYPESSAVTRPLMSGEIMTSHAPSDPVEMRRLNF 187
+ C IS+ + S+ +R + ES+ + P +++R+
Sbjct: 64 SHHYCNISDHVGDPSNSLWVRVKARVGQKESAYAKSEEFAVCRDGKIGPPK-LDIRKEEK 122
Query: 188 QTPGMVSHPPIPISRLAQHIENLKANDNLKFSQEYESIEPGQQFTWDHSSMEMNKAKNRY 247
Q + HP + ++ Q ++ + + + Y + + S K +
Sbjct: 123 QIMIDIFHPSVFVNGDEQEVDY--DPETTCYIRVYNV------YVRMNGSEIQYKILTQK 174
Query: 248 ANVIAYDHSRVILSTVDGIPGSDYINANYC 277
+ ++ + N+ YC
Sbjct: 175 EDDCDEIQCQLAIPVSSL-------NSQYC 197
>3up1_A Interleukin-7 receptor subunit alpha; cytokine receptor,
fibronectin type 3 fold, membrane and SOL glycosylation,
immune system; HET: NAG FUC NGA; 2.15A {Homo sapiens}
PDB: 3di3_B* 3di2_B*
Length = 223
Score = 30.5 bits (68), Expect = 3.7
Identities = 7/88 (7%), Positives = 25/88 (28%), Gaps = 16/88 (18%)
Query: 67 VNISLRAHDVSTHSMTLSWSPPIKLNP----VKYKISLDAVKEFVDSQGITQTQIVPRRT 122
++S+ + + ++++ + + + +
Sbjct: 117 FDLSVVYRE-GANDFVVTFNTSHLQKKYVKVLMHDV-----------AYRQEKDENKWTH 164
Query: 123 LFLEPTETECTISELSPFTTYSVNIRRR 150
+ L T+ +L P Y + +R
Sbjct: 165 VNLSSTKLTLLQRKLQPAAMYEIKVRSI 192
>3qt2_A Interleukin-5 receptor subunit alpha; cytokine type I receptor
fold, fibronectin type III modules, helical bundle,
cytokine, ligand-receptor complex; HET: BGC; 2.55A {Homo
sapiens}
Length = 317
Score = 30.6 bits (68), Expect = 4.7
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 47 LEPTETECTISELSPFTTYSVNISLRAHDVSTHSMTLS-WSPPI 89
+E T IS + + Y V + + + S WS PI
Sbjct: 268 IEKLMTNAFISIIDDLSKYDVQVRAAVSSMCREAGLWSEWSQPI 311
Score = 29.5 bits (65), Expect = 9.7
Identities = 15/91 (16%), Positives = 26/91 (28%), Gaps = 29/91 (31%)
Query: 67 VNISLRAHDVSTHSMTLSWSPPIKLNP-------VKYKISLDAVKEFVDSQGITQTQIVP 119
+N++ + M++ W P+ P VK + QI
Sbjct: 225 LNVTAE---IEGTRMSIQWEKPVSAFPIHCFDYEVKIH-----------NTRNGYLQIEK 270
Query: 120 RRTLFLEPTETECTISELSPFTTYSVNIRRR 150
T IS + + Y V +R
Sbjct: 271 --------LMTNAFISIIDDLSKYDVQVRAA 293
>3emu_A Leucine rich repeat and phosphatase domain containing protein;
structural genomics, hydrolase, PSI-2, protein structure
initiative; 2.30A {Entamoeba histolytica}
Length = 161
Score = 29.5 bits (67), Expect = 6.4
Identities = 12/84 (14%), Positives = 27/84 (32%), Gaps = 13/84 (15%)
Query: 1554 QFQLIDWPEQGVPKSGDGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVL 1613
+ ++ + S I FI + + K + + GV + +IV+
Sbjct: 58 RLDIVSEEGHQLYDSIPNAIKFIIRSIQRK------EGVLIISGTGVNKAP-----AIVI 106
Query: 1614 -ERMQYEGVIDLFQTVRILRTQRP 1636
M Y+ + ++ P
Sbjct: 107 AFLMYYQR-LSFINAFNKVQGLYP 129
>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta
barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans}
SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1
Length = 907
Score = 30.3 bits (69), Expect = 7.4
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 178 DPVEMRRLNFQTPGMVSH 195
DP E+R LN G +
Sbjct: 560 DPFELRALNCYREGDTTS 577
>3gas_A Heme oxygenase; FMN-binding split barrel, oxidoreductase; HET: HEM;
1.80A {Helicobacter pylori}
Length = 259
Score = 29.7 bits (66), Expect = 8.0
Identities = 24/111 (21%), Positives = 32/111 (28%), Gaps = 5/111 (4%)
Query: 107 VDSQGIT--QTQIVPRRTLFLEPTETECTISELSPFTTYSVNIRRRQPRKYPESSAVTRP 164
VDSQGI R F + + SV E A
Sbjct: 38 VDSQGIVIGYNNNQTLRIEFNHEVKDPKDYKNATIELCQSVEKTHDLKGVEEEVKAFKEG 97
Query: 165 LMSGEIMTSHAPSDPVEMRRLNFQTPGMVSHPPIPISRLAQHIENLKANDN 215
S + T H V + G I +S +A+H LK N +
Sbjct: 98 FDSVCLATLHPNGHVV-CSYAPLMSDG--KQYYIYVSEVAEHFAGLKNNPH 145
>1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 117
Score = 28.7 bits (64), Expect = 8.1
Identities = 7/77 (9%), Positives = 18/77 (23%), Gaps = 19/77 (24%)
Query: 76 VSTHSMTLSWSPPIKLNP----VKYKISLDAVKEFVDSQGITQTQIVPRRTLFLEPTETE 131
+ + L+W + YK+ + + + T
Sbjct: 29 ATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQ---------------NNVQVLNTNKT 73
Query: 132 CTISELSPFTTYSVNIR 148
L Y + ++
Sbjct: 74 SAELVLPIKEDYIIEVK 90
>1vl7_A Hypothetical protein ALR5027; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI, oxidoreductase; 1.50A {Nostoc SP} SCOP: b.45.1.1
Length = 157
Score = 28.9 bits (64), Expect = 8.8
Identities = 16/85 (18%), Positives = 27/85 (31%), Gaps = 1/85 (1%)
Query: 584 QDGPITVHCSRLAQHIENLKANDNLKFSQEYESIEPGQQFTWDHSSMEMN-KAKNRYANV 642
I ++ S LA H +N++AN + + + Q F S + R +
Sbjct: 55 DAKNIYIYVSGLAVHTKNIEANPLVNVLFVDDEAKTNQIFARRRLSFDCTATLIERESQK 114
Query: 643 IAYDHSRVILSTVDGIPGRDGFIDF 667
+ I G DF
Sbjct: 115 WNQVVDQFQERFGQIIEVLRGLADF 139
>3erp_A Putative oxidoreductase; funded by the national institute of
allergy and infectious D of NIH contract number
HHSN272200700058C; 1.55A {Salmonella enterica subsp}
Length = 353
Score = 29.9 bits (68), Expect = 8.9
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 193 VSHPPIPISRLAQHIENLKANDNLKFSQE 221
V+ I S+ +Q + + N +FS
Sbjct: 312 VTSVLIGASKPSQIEDAVGMLANRRFSAA 340
Score = 29.9 bits (68), Expect = 9.2
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 593 SRLAQHIENLKANDNLKFSQE 613
S+ +Q + + N +FS
Sbjct: 320 SKPSQIEDAVGMLANRRFSAA 340
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.412
Gapped
Lambda K H
0.267 0.0473 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 27,295,628
Number of extensions: 1684908
Number of successful extensions: 4855
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4010
Number of HSP's successfully gapped: 795
Length of query: 1773
Length of database: 6,701,793
Length adjustment: 107
Effective length of query: 1666
Effective length of database: 3,714,246
Effective search space: 6187933836
Effective search space used: 6187933836
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.1 bits)