BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8774
(427 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EDY|A Chain A, Solution Structures Of The Fn3 Domain Of Human Receptor-
Type Tyrosine-Protein Phosphatase F
Length = 103
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 107 ITWDPPLRTHRNGQIVLYNVKFHKKIDANNVIHRNTTQTKAVFSNLEEGIEYSAEVQAIT 166
+ WDPP+ RNG+I+ Y V F + I++ + TT T+ + L+ Y +V+A T
Sbjct: 27 LAWDPPVLAERNGRIISYTVVF-RDINSQQELQNITTDTRFTLTGLKPDTTYDIKVRAWT 85
Query: 167 KAGPGPWSPKL 177
G GP SP +
Sbjct: 86 SKGSGPLSPSI 96
>pdb|3F7R|A Chain A, First Pair Of Fibronectin Type Iii Domains And Part Of The
Connecting Segment Of The Integrin Beta4
Length = 249
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 70/171 (40%), Gaps = 13/171 (7%)
Query: 10 IELVWSQPTQTYGEILGYRVKYGVREHTLKE-NLVNSKNMSFLITNLERGVEYEFRIAGQ 68
I W P+ G+ +GYRVKY ++ + E +L++SK S +TNL +YE ++
Sbjct: 22 IHFNWLPPS---GKPMGYRVKYWIQGDSESEAHLLDSKVPSVELTNLYPYCDYEMKVCAY 78
Query: 69 NHIGYGQETVRYYXXXXXXXXXXXANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKF 128
G G + ++ + + V ++W P T NG+I Y V +
Sbjct: 79 GAQGEGPYSSLVSCRTHQEVPSEPGRLAFNVVSSTVTQLSWAEPAET--NGEITAYEVCY 136
Query: 129 HKKIDAN-------NVIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGP 172
D N V+ N + NL E Y V+A AG GP
Sbjct: 137 GLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYTVKARNGAGWGP 187
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 11 ELVWSQPTQTYGEILGYRVKYGVREH------TLKENLV-NSKNMSFLITNLERGVEYEF 63
+L W++P +T GEI Y V YG+ +K+ LV N KN LI NL Y +
Sbjct: 116 QLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRY 175
Query: 64 RIAGQNHIGYGQE 76
+ +N G+G E
Sbjct: 176 TVKARNGAGWGPE 188
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 6/120 (5%)
Query: 107 ITWDPPLRTHRNGQIVLYNVKFHKKIDANNVIHRNTTQTKAV-FSNLEEGIEYSAEVQAI 165
W PP +G+ + Y VK+ + D+ + H ++ +V +NL +Y +V A
Sbjct: 24 FNWLPP-----SGKPMGYRVKYWIQGDSESEAHLLDSKVPSVELTNLYPYCDYEMKVCAY 78
Query: 166 TKAGPGPWSPKLSLMTARDMVRAPLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTM 225
G GP+S +S T +++ P + S ++ W G+I Y++ Y +
Sbjct: 79 GAQGEGPYSSLVSCRTHQEVPSEPGRLAFNVVSSTVTQLSWAEPAETNGEITAYEVCYGL 138
>pdb|3F7P|C Chain C, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
pdb|3F7P|D Chain D, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
pdb|3F7P|E Chain E, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
Length = 248
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 70/171 (40%), Gaps = 13/171 (7%)
Query: 10 IELVWSQPTQTYGEILGYRVKYGVREHTLKE-NLVNSKNMSFLITNLERGVEYEFRIAGQ 68
I W P+ G+ +GYRVKY ++ + E +L++SK S +TNL +YE ++
Sbjct: 21 IHFNWLPPS---GKPMGYRVKYWIQGDSESEAHLLDSKVPSVELTNLYPYCDYEMKVCAY 77
Query: 69 NHIGYGQETVRYYXXXXXXXXXXXANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKF 128
G G + ++ + + V ++W P T NG+I Y V +
Sbjct: 78 GAQGEGPYSSLVSCRTHQEVPSEPGRLAFNVVSSTVTQLSWAEPAET--NGEITAYEVCY 135
Query: 129 HKKIDAN-------NVIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGP 172
D N V+ N + NL E Y V+A AG GP
Sbjct: 136 GLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYTVKARNGAGWGP 186
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 11 ELVWSQPTQTYGEILGYRVKYGVREH------TLKENLV-NSKNMSFLITNLERGVEYEF 63
+L W++P +T GEI Y V YG+ +K+ LV N KN LI NL Y +
Sbjct: 115 QLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRY 174
Query: 64 RIAGQNHIGYGQE 76
+ +N G+G E
Sbjct: 175 TVKARNGAGWGPE 187
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 6/120 (5%)
Query: 107 ITWDPPLRTHRNGQIVLYNVKFHKKIDANNVIHRNTTQTKAV-FSNLEEGIEYSAEVQAI 165
W PP +G+ + Y VK+ + D+ + H ++ +V +NL +Y +V A
Sbjct: 23 FNWLPP-----SGKPMGYRVKYWIQGDSESEAHLLDSKVPSVELTNLYPYCDYEMKVCAY 77
Query: 166 TKAGPGPWSPKLSLMTARDMVRAPLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTM 225
G GP+S +S T +++ P + S ++ W G+I Y++ Y +
Sbjct: 78 GAQGEGPYSSLVSCRTHQEVPSEPGRLAFNVVSSTVTQLSWAEPAETNGEITAYEVCYGL 137
>pdb|3F7Q|A Chain A, First Pair Of Fibronectin Type Iii Domains And Part Of The
Connecting Segment Of The Integrin Beta4
pdb|3F7Q|B Chain B, First Pair Of Fibronectin Type Iii Domains And Part Of The
Connecting Segment Of The Integrin Beta4
Length = 234
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 70/171 (40%), Gaps = 13/171 (7%)
Query: 10 IELVWSQPTQTYGEILGYRVKYGVREHTLKE-NLVNSKNMSFLITNLERGVEYEFRIAGQ 68
I W P+ G+ +GYRVKY ++ + E +L++SK S +TNL +YE ++
Sbjct: 22 IHFNWLPPS---GKPMGYRVKYWIQGDSESEAHLLDSKVPSVELTNLYPYCDYEMKVCAY 78
Query: 69 NHIGYGQETVRYYXXXXXXXXXXXANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKF 128
G G + ++ + + V ++W P T NG+I Y V +
Sbjct: 79 GAQGEGPYSSLVSCRTHQEVPSEPGRLAFNVVSSTVTQLSWAEPAET--NGEITAYEVCY 136
Query: 129 HKKIDAN-------NVIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGP 172
D N V+ N + NL E Y V+A AG GP
Sbjct: 137 GLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYTVKARNGAGWGP 187
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 11 ELVWSQPTQTYGEILGYRVKYGVREH------TLKENLV-NSKNMSFLITNLERGVEYEF 63
+L W++P +T GEI Y V YG+ +K+ LV N KN LI NL Y +
Sbjct: 116 QLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRY 175
Query: 64 RIAGQNHIGYGQE 76
+ +N G+G E
Sbjct: 176 TVKARNGAGWGPE 188
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 6/120 (5%)
Query: 107 ITWDPPLRTHRNGQIVLYNVKFHKKIDANNVIHRNTTQTKAV-FSNLEEGIEYSAEVQAI 165
W PP +G+ + Y VK+ + D+ + H ++ +V +NL +Y +V A
Sbjct: 24 FNWLPP-----SGKPMGYRVKYWIQGDSESEAHLLDSKVPSVELTNLYPYCDYEMKVCAY 78
Query: 166 TKAGPGPWSPKLSLMTARDMVRAPLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTM 225
G GP+S +S T +++ P + S ++ W G+I Y++ Y +
Sbjct: 79 GAQGEGPYSSLVSCRTHQEVPSEPGRLAFNVVSSTVTQLSWAEPAETNGEITAYEVCYGL 138
>pdb|2DN7|A Chain A, Solution Structures Of The 6th Fn3 Domain Of Human
Receptor- Type Tyrosine-Protein Phosphatase F
Length = 107
Score = 47.8 bits (112), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYGVREHTLKENLVN--SKNMSFLITNLERGVEYEFRIA 66
T L W P + GE+LGYR++Y R + N ++ + F +T L +G Y FR+A
Sbjct: 22 TALLQWHPPKELPGELLGYRLQY-CRADEARPNTIDFGKDDQHFTVTGLHKGTTYIFRLA 80
Query: 67 GQNHIGYGQE 76
+N G G+E
Sbjct: 81 AKNRAGLGEE 90
>pdb|1QG3|A Chain A, Crystal Structure Of A Tandem Pair Of Fibronectin Type Iii
Domains From The Cytoplasmic Tail Of Integrin Alpha6
Beta4
pdb|1QG3|B Chain B, Crystal Structure Of A Tandem Pair Of Fibronectin Type Iii
Domains From The Cytoplasmic Tail Of Integrin Alpha6
Beta4
Length = 195
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 70/171 (40%), Gaps = 13/171 (7%)
Query: 10 IELVWSQPTQTYGEILGYRVKYGVREHTLKE-NLVNSKNMSFLITNLERGVEYEFRIAGQ 68
I W P+ G+ +GYRVKY ++ + E +L++SK S +TNL +YE ++
Sbjct: 18 IHFNWLPPS---GKPMGYRVKYWIQGDSESEAHLLDSKVPSVELTNLYPYCDYEMKVCAY 74
Query: 69 NHIGYGQETVRYYXXXXXXXXXXXANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKF 128
G G + ++ + + V ++W P T NG+I Y V +
Sbjct: 75 GAQGEGPYSSLVSCRTHQEVPSEPGRLAFNVVSSTVTQLSWAEPAET--NGEITAYEVCY 132
Query: 129 HKKIDAN-------NVIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGP 172
D N V+ N + NL E Y V+A AG GP
Sbjct: 133 GLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYTVKARNGAGWGP 183
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 11 ELVWSQPTQTYGEILGYRVKYGVREH------TLKENLV-NSKNMSFLITNLERGVEYEF 63
+L W++P +T GEI Y V YG+ +K+ LV N KN LI NL Y +
Sbjct: 112 QLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRY 171
Query: 64 RIAGQNHIGYGQE 76
+ +N G+G E
Sbjct: 172 TVKARNGAGWGPE 184
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 6/120 (5%)
Query: 107 ITWDPPLRTHRNGQIVLYNVKFHKKIDANNVIHRNTTQTKAV-FSNLEEGIEYSAEVQAI 165
W PP +G+ + Y VK+ + D+ + H ++ +V +NL +Y +V A
Sbjct: 20 FNWLPP-----SGKPMGYRVKYWIQGDSESEAHLLDSKVPSVELTNLYPYCDYEMKVCAY 74
Query: 166 TKAGPGPWSPKLSLMTARDMVRAPLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTM 225
G GP+S +S T +++ P + S ++ W G+I Y++ Y +
Sbjct: 75 GAQGEGPYSSLVSCRTHQEVPSEPGRLAFNVVSSTVTQLSWAEPAETNGEITAYEVCYGL 134
>pdb|1X5H|A Chain A, The Solution Structure Of The Third Fibronectin Type Iii
Domain Of Human Neogenin
Length = 132
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 17 PTQTYGEILGYRVKY--GVREHTLKENLVNSKNMSFLITNLERGVEYEFRIAGQNHIGYG 74
P G+I GY+++Y R+ + E LV+ +S LI L+RG EY FR+A G G
Sbjct: 44 PATQNGQITGYKIRYRKASRKSDVTETLVSGTQLSQLIEGLDRGTEYNFRVAALTINGTG 103
Query: 75 QET 77
T
Sbjct: 104 PAT 106
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 94 NISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANNVIHR--NTTQTKAVFSN 151
N+S + + I W PP +NGQI Y +++ K ++V + TQ +
Sbjct: 24 NLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTETLVSGTQLSQLIEG 83
Query: 152 LEEGIEYSAEVQAITKAGPGPWSPKLSLMT 181
L+ G EY+ V A+T G GP + LS T
Sbjct: 84 LDRGTEYNFRVAALTINGTGPATDWLSAET 113
>pdb|1FNF|A Chain A, Fragment Of Human Fibronectin Encompassing Type-Iii
Repeats 7 Through 10
Length = 368
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 68/168 (40%), Gaps = 18/168 (10%)
Query: 14 WSQPTQTYGEILGYRVKYGVREHT--LKENLVNSKNMSFLITNLERGVEYEFRIAGQNHI 71
W P T I GYR+++ + +E+ V S +TNL G EY I N
Sbjct: 206 WIAPRAT---ITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALN-- 260
Query: 72 GYGQETVRYYXXXXXXXXXXXANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKK 131
G+E ++ TP + I+WD P T R +I + +
Sbjct: 261 --GREESPLLIGQQSTVSDVPRDLEVVAATPTSLLISWDAPAVTVRYYRIT------YGE 312
Query: 132 IDANNVIHRNT---TQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPK 176
N+ + T +++ A S L+ G++Y+ V A+T G P S K
Sbjct: 313 TGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGRGDSPASSK 360
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 53/236 (22%), Positives = 94/236 (39%), Gaps = 29/236 (12%)
Query: 19 QTYGEILGYRVKY----GVREHTLKENLVNSKNMSFLITNLERGVEYEFRIAGQNHIGYG 74
T +I GYR+ G + ++L+E +V++ S NL G+EY + +
Sbjct: 26 STTPDITGYRITTTPTNGQQGNSLEE-VVHADQSSCTFDNLSPGLEYNVSVY---TVKDD 81
Query: 75 QETVRYYXXXXXXXXXXXANISHHFQTPDVVCITWDPPLRTHRNGQIVLYN-VKFHKKID 133
+E+V ++ PD + +TW PP +V Y+ VK + +
Sbjct: 82 KESVPI-SDTIIPAVPPPTDLRFTNIGPDTMRVTWAPPPSIDLTNFLVRYSPVKNEEDVA 140
Query: 134 ANNVIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTARDM--VRAPLG 191
++ + + V +NL G EY V ++ + + + + R + +P G
Sbjct: 141 ELSI---SPSDNAVVLTNLLPGTEYVVSVSSVYEQH------ESTPLRGRQKTGLDSPTG 191
Query: 192 VKALATSDQSVEVWWKPVPAGRGKILGYQI-----FYTMTAVEDLDEWSQKSIPLT 242
+ + S V W A R I GY+I ++ ED S+ SI LT
Sbjct: 192 IDFSDITANSFTVHWI---APRATITGYRIRHHPEHFSGRPREDRVPHSRNSITLT 244
>pdb|1X5G|A Chain A, The Solution Structure Of The Second Fibronectin Type Iii
Domain Of Human Neogenin
Length = 116
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 8 VTIELVWSQPTQTYGEILGYRVKYGVREHTLKENLVNSKNMSFLITNLERGVEYEFRIAG 67
+I + W P GEI Y++ Y + + T KE V+ + S+ I L++ EY FR+
Sbjct: 32 TSITVTWETPVSGNGEIQNYKLYY-MEKGTDKEQDVDVSSHSYTINGLKKYTEYSFRVVA 90
Query: 68 QNHIGYGQET 77
N G G T
Sbjct: 91 YNKHGPGVST 100
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 94 NISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKF-HKKIDANNVIHRNTTQTKAVFSNL 152
N+ + +P + +TW+ P+ NG+I Y + + K D + + + + L
Sbjct: 23 NLRAYAASPTSITVTWETPVS--GNGEIQNYKLYYMEKGTDKEQDV--DVSSHSYTINGL 78
Query: 153 EEGIEYSAEVQAITKAGPGPWSPKLSLMTARD 184
++ EYS V A K GPG +P +++ T D
Sbjct: 79 KKYTEYSFRVVAYNKHGPGVSTPDVAVRTLSD 110
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 33/125 (26%)
Query: 192 VKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNIARIF 251
++A A S S+ V W+ +G G+I Y+++Y +++ + K
Sbjct: 24 LRAYAASPTSITVTWETPVSGNGEIQNYKLYY-------MEKGTDKE------------- 63
Query: 252 YTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLSGKVTVKVKPE 311
+D+D S S + L+K+TEY+ V A +G G + V V+ +
Sbjct: 64 ------QDVDVSSH-------SYTINGLKKYTEYSFRVVAYNKHGPGVSTPDVAVRTLSD 110
Query: 312 DVPLS 316
P S
Sbjct: 111 SGPSS 115
>pdb|3LPW|A Chain A, Crystal Structure Of The Fniii-Tandem A77-A78 From The
A-Band Of Titin
pdb|3LPW|B Chain B, Crystal Structure Of The Fniii-Tandem A77-A78 From The
A-Band Of Titin
Length = 197
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 66/173 (38%), Gaps = 9/173 (5%)
Query: 2 LKEEPEVTIELVWSQPTQTYG-EILGYRVKYGVREHTLKEN---LVNSKNMSFLITNLER 57
+KE + ++ L W P G +I Y V+ RE T K N S+ + L+
Sbjct: 14 VKEVTKTSVTLTWDPPLLDGGSKIKNYIVEK--RESTRKAYSTVATNCHKTSWKVDQLQE 71
Query: 58 GVEYEFRIAGQNHIGYGQETVRYYXXXXXXXXXXXANISHHFQTPDVVCITWDPPLRTHR 117
G Y FR+ +N G G I+ T + V ++W+ P H
Sbjct: 72 GCSYYFRVLAENEYGIGLPAETAESVKASERPLPPGKITLMDVTRNSVSLSWEKP--EHD 129
Query: 118 NGQIVL-YNVKFHKKIDANNVIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAG 169
G +L Y V+ K T+A + L +G EYS V A + G
Sbjct: 130 GGSRILGYIVEMQTKGSDKWATCATVKVTEATITGLIQGEEYSFRVSAQNEKG 182
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 49/117 (41%), Gaps = 3/117 (2%)
Query: 105 VCITWDPPLRTHRNGQIVLYNV-KFHKKIDANNVIHRNTTQTKAVFSNLEEGIEYSAEVQ 163
V +TWDPPL +I Y V K A + + N +T L+EG Y V
Sbjct: 22 VTLTWDPPL-LDGGSKIKNYIVEKRESTRKAYSTVATNCHKTSWKVDQLQEGCSYYFRVL 80
Query: 164 AITKAGPGPWSPKLSLMTARDMVRAPLGVKALATSDQSVEVWW-KPVPAGRGKILGY 219
A + G G + + A + P + + + SV + W KP G +ILGY
Sbjct: 81 AENEYGIGLPAETAESVKASERPLPPGKITLMDVTRNSVSLSWEKPEHDGGSRILGY 137
>pdb|2DJS|A Chain A, Solution Structures Of The Fn3 Domain Of Human Ephrin
Type- B Receptor 1
Length = 108
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYGVREHT-LKENLVNSKNMSFLITNLERGVEYEFRIAG 67
+I L W QP Q G IL Y ++Y +EH ++ S+ + I L G+ Y ++
Sbjct: 23 SITLSWPQPEQPNGIILDYEIRYYEKEHNEFNSSMARSQTNTARIDGLRPGMVYVVQVRA 82
Query: 68 QNHIGYGQ 75
+ GYG+
Sbjct: 83 RTVAGYGK 90
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 271 TESAELTSLEKFTEYAVAVAARTVNGLGRLSGKVTVKVKPEDVPLS 316
T +A + L Y V V ARTV G G+ SGK+ + + P S
Sbjct: 62 TNTARIDGLRPGMVYVVQVRARTVAGYGKFSGKMCFQTLTDSGPSS 107
>pdb|3R8Q|A Chain A, Structure Of Fibronectin Domain 12-14
Length = 290
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 64/162 (39%), Gaps = 15/162 (9%)
Query: 7 EVTIELVWSQPTQTYGEILGYRV-KYGVREHTLKENLVNSKNMSFLITNLERGVEYEFRI 65
E TI + W T+T I G++V T + + S+ IT L+ G +Y+ +
Sbjct: 126 ETTITISWRTKTET---ITGFQVDAVPANGQTPIQRTIKPDVRSYTITGLQPGTDYKIYL 182
Query: 66 AGQNHIGYGQETVRYYXXXXXXXXXXXANISHHFQTPDVVCITWDPPLRTHRNGQIVLYN 125
N V +N+ TP+ + ++W PP +I Y
Sbjct: 183 YTLNDNARSSPVV----IDASTAIDAPSNLRFLATTPNSLLVSWQPP-----RARITGYI 233
Query: 126 VKFHKK-IDANNVIHR-NTTQTKAVFSNLEEGIEYSAEVQAI 165
+K+ K V+ R T+A + LE G EY+ V A+
Sbjct: 234 IKYEKPGSPPREVVPRPRPGVTEATITGLEPGTEYTIYVIAL 275
>pdb|1FNH|A Chain A, Crystal Structure Of Heparin And Integrin Binding Segment
Of Human Fibronectin
Length = 271
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 64/162 (39%), Gaps = 15/162 (9%)
Query: 7 EVTIELVWSQPTQTYGEILGYRV-KYGVREHTLKENLVNSKNMSFLITNLERGVEYEFRI 65
E TI + W T+T I G++V T + + S+ IT L+ G +Y+ +
Sbjct: 107 ETTITISWRTKTET---ITGFQVDAVPANGQTPIQRTIKPDVRSYTITGLQPGTDYKIYL 163
Query: 66 AGQNHIGYGQETVRYYXXXXXXXXXXXANISHHFQTPDVVCITWDPPLRTHRNGQIVLYN 125
N V +N+ TP+ + ++W PP +I Y
Sbjct: 164 YTLNDNARSSPVV----IDASTAIDAPSNLRFLATTPNSLLVSWQPP-----RARITGYI 214
Query: 126 VKFHKK-IDANNVIHR-NTTQTKAVFSNLEEGIEYSAEVQAI 165
+K+ K V+ R T+A + LE G EY+ V A+
Sbjct: 215 IKYEKPGSPPREVVPRPRPGVTEATITGLEPGTEYTIYVIAL 256
>pdb|2ED9|A Chain A, Solution Structure Of The Third Fibronectin Type Iii
Domain Of Human Netrin Receptor Dcc
Length = 124
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 36/79 (45%)
Query: 94 NISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANNVIHRNTTQTKAVFSNLE 153
N+S + ++W PP +NG I Y ++ K + +F+ LE
Sbjct: 34 NVSLEVVNSRSIKVSWLPPPSGTQNGFITGYKIRHRKTTRRGEMETLEPNNLWYLFTGLE 93
Query: 154 EGIEYSAEVQAITKAGPGP 172
+G +YS +V A+T G GP
Sbjct: 94 KGSQYSFQVSAMTVNGTGP 112
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 56/133 (42%), Gaps = 35/133 (26%)
Query: 169 GPGPWSPKLSLMTARDMVRAP-LGVKALATSDQSVEVWWKPVPAG--RGKILGYQIFYTM 225
GPG + ++++T D+ AP V + +S++V W P P+G G I GY+I +
Sbjct: 11 GPGVSTDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFITGYKIRHRK 70
Query: 226 TAVEDLDEWSQKSIPLTESSNIARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEY 285
T E E +N+ +F T LEK ++Y
Sbjct: 71 TTRRGEME-------TLEPNNLWYLF-------------------------TGLEKGSQY 98
Query: 286 AVAVAARTVNGLG 298
+ V+A TVNG G
Sbjct: 99 SFQVSAMTVNGTG 111
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 9 TIELVWSQP---TQTYGEILGYRVKYGVREHTLKENL--VNSKNMSFLITNLERGVEYEF 63
+I++ W P TQ G I GY++++ R+ T + + + N+ +L T LE+G +Y F
Sbjct: 44 SIKVSWLPPPSGTQN-GFITGYKIRH--RKTTRRGEMETLEPNNLWYLFTGLEKGSQYSF 100
Query: 64 RIAGQNHIGYGQETVRY 80
+++ G G + Y
Sbjct: 101 QVSAMTVNGTGPPSNWY 117
>pdb|2DLH|A Chain A, Solution Structure Of The Second Fn3 Domain Of Human
Receptor-Type Tyrosine-Protein Phosphatase Delta
Length = 121
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 40/81 (49%)
Query: 171 GPWSPKLSLMTARDMVRAPLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVED 230
G P L+ + + AP V+A S ++ V WK G+I GY+++YTM +
Sbjct: 4 GSSGPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEPEEPNGQIQGYRVYYTMDPTQH 63
Query: 231 LDEWSQKSIPLTESSNIARIF 251
++ W + ++ ++ + I +
Sbjct: 64 VNNWMKHNVADSQITTIGNLV 84
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYGV--REHT---LKENLVNSKNMSFLITNLERGVEYEF 63
TI + W +P + G+I GYRV Y + +H +K N+ +S+ + I NL Y
Sbjct: 34 TILVQWKEPEEPNGQIQGYRVYYTMDPTQHVNNWMKHNVADSQITT--IGNLVPQKTYSV 91
Query: 64 RIAGQNHIGYG 74
++ IG G
Sbjct: 92 KVLAFTSIGDG 102
>pdb|1VA9|A Chain A, Solution Structure Of The Second Fniii Domain Of Dscaml1
Protein
Length = 122
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 101 TPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANN----VIHRNTTQTKAVFS--NLEE 154
T + +TW P + +NG I Y + + + +N ++ T V++ NL++
Sbjct: 28 TSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMKATGDSEVYTLDNLKK 87
Query: 155 GIEYSAEVQAITKAGPGPWSPKLSLMT 181
+Y VQA +AG GP S +++ T
Sbjct: 88 FAQYGVVVQAFNRAGTGPSSSEINATT 114
>pdb|2E7H|A Chain A, Solution Structure Of The Second Fn3 Domain From Human
Ephrin Type-B Receptor 4
Length = 109
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 101 TPDVVCITWDPPLRTHRNGQIVLYNVKFHKKI--DANNVIHRNTTQTKAVFSNLEEGIEY 158
+P + + W P +G ++ Y VK+H+K ++V T++ +A L+ G Y
Sbjct: 20 SPSSLSLAWAVPRAP--SGAVLDYEVKYHEKGAEGPSSVRFLKTSENRAELRGLKRGASY 77
Query: 159 SAEVQAITKAGPGPW 173
+V+A ++AG GP+
Sbjct: 78 LVQVRARSEAGYGPF 92
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 9 TIELVWSQPTQTYGEILGYRVKY---GVREHTLKENLVNSKNMSFLITNLERGVEYEFRI 65
++ L W+ P G +L Y VKY G + L S+N + L L+RG Y ++
Sbjct: 23 SLSLAWAVPRAPSGAVLDYEVKYHEKGAEGPSSVRFLKTSENRAEL-RGLKRGASYLVQV 81
Query: 66 AGQNHIGYG 74
++ GYG
Sbjct: 82 RARSEAGYG 90
>pdb|1MFN|A Chain A, Solution Nmr Structure Of Linked Cell Attachment Modules
Of Mouse Fibronectin Containing The Rgd And Synergy
Regions, 20 Structures
pdb|2MFN|A Chain A, Solution Nmr Structure Of Linked Cell Attachment Modules
Of Mouse Fibronectin Containing The Rgd And Synergy
Regions, 10 Structures
Length = 184
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 68/159 (42%), Gaps = 17/159 (10%)
Query: 24 ILGYRVKYGVREHTL---KENLVNSKNMSFLITNLERGVEYEFRIAGQNHIGYGQETVRY 80
I GY +++ EH++ +++ V S +TNL G EY I N G+E
Sbjct: 29 ITGYIIRHHA-EHSVGRPRQDRVPPSRNSITLTNLNPGTEYVVSIIAVN----GREESPP 83
Query: 81 YXXXXXXXXXXXANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANNVIHR 140
++ TP + I+W+PP + R Y + + + N+ +
Sbjct: 84 LIGQQATVSDIPRDLEVIASTPTSLLISWEPPAVSVR-----YYRITY-GETGGNSPVQE 137
Query: 141 NT---TQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPK 176
T +++ A +N++ G +Y+ + A+T G P S K
Sbjct: 138 FTVPGSKSTATINNIKPGADYTITLYAVTGRGDSPASSK 176
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 269 PLTESAELTSLEKFTEYAVAVAARTVNGLGRLSGKVTVKVKPEDVPLSLRAHDVSTHSMT 328
P S LT+L TEY V++ A VNG + + D+P L + S+
Sbjct: 52 PSRNSITLTNLNPGTEYVVSIIA--VNGREESPPLIGQQATVSDIPRDLEVIASTPTSLL 109
Query: 329 LSWSPP 334
+SW PP
Sbjct: 110 ISWEPP 115
>pdb|4GO6|B Chain B, Crystal Structure Of Hcf-1 Self-Association Sequence 1
pdb|4GO6|D Chain D, Crystal Structure Of Hcf-1 Self-Association Sequence 1
Length = 232
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 4/111 (3%)
Query: 55 LERGVEYEFRIAGQNHIGYGQ-ETVRYYXXXXXXXXXXXANISHHFQTPDVVCITWDPPL 113
L+ G Y+FR+AG N G G + + I ++PD +TW+PP
Sbjct: 53 LQPGTAYKFRVAGINACGRGPFSEISAFKTCLPGFPGAPCAIKIS-KSPDGAHLTWEPPS 111
Query: 114 RTHRNGQIVLYNVKFHKKIDANNVIHRNTTQTKAVFSNLEEGIEYSAEVQA 164
T +G+I+ Y+V + +++T + F + G S VQ+
Sbjct: 112 VT--SGKIIEYSVYLAIQSSQAGGELKSSTPAQLAFXRVYCGPSPSCLVQS 160
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 152 LEEGIEYSAEVQAITKAGPGPWSPKLSLMTA-RDMVRAPLGVKALATSDQSVEVWWKPVP 210
L+ G Y V I G GP+S + T AP +K ++ S + W+P
Sbjct: 53 LQPGTAYKFRVAGINACGRGPFSEISAFKTCLPGFPGAPCAIK-ISKSPDGAHLTWEPPS 111
Query: 211 AGRGKILGYQIFYTMTAVE 229
GKI+ Y ++ + + +
Sbjct: 112 VTSGKIIEYSVYLAIQSSQ 130
>pdb|2EDX|A Chain A, Solution Structures Of The Fn3 Domain Of Human Receptor-
Type Tyrosine-Protein Phosphatase F
Length = 134
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 10/92 (10%)
Query: 105 VCITWDPPLRTHRNGQIVLYNVKFHKKIDANN-------VIHRNTTQTKAVFSNLEEGIE 157
V ++W PP RNG I Y+V + + +D + I R + V LE+ E
Sbjct: 35 VRVSWVPPPADSRNGVITQYSVAY-EAVDGEDRGRHVVDGISREHSSWDLV--GLEKWTE 91
Query: 158 YSAEVQAITKAGPGPWSPKLSLMTARDMVRAP 189
Y V+A T GPGP S + + T D+ P
Sbjct: 92 YRVWVRAHTDVGPGPESSPVLVRTDEDVPSGP 123
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 275 ELTSLEKFTEYAVAVAARTVNGLGRLSGKVTVKVKPEDVP 314
+L LEK+TEY V V A T G G S V V+ EDVP
Sbjct: 82 DLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTD-EDVP 120
>pdb|3T1W|A Chain A, Structure Of The Four-Domain Fragment Fn7b89 Of Oncofetal
Fibronectin
Length = 375
Score = 35.0 bits (79), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 90/230 (39%), Gaps = 28/230 (12%)
Query: 24 ILGYRVKYGVREHTLK--ENLVNSKNMSFLITNLERGVEYEFRIAGQNHIG-YGQETVRY 80
I+GYR+ + E+ V+S + +T LE G++Y+ + + G T+
Sbjct: 124 IIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVITLINGGESAPTTLTQ 183
Query: 81 YXXXXXXXXXXXANISHHFQTPDVVCITWDPPLRTHRNGQIVLYN-VKFHKKIDANNVIH 139
NI PD + +TW PP +V Y+ VK + + ++
Sbjct: 184 QTAVPPPTDLRFTNIG-----PDTMRVTWAPPPSIDLTNFLVRYSPVKNEEDVAELSI-- 236
Query: 140 RNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTARDM--VRAPLGVKALAT 197
+ + V +NL G EY V ++ + + + + R + +P G+
Sbjct: 237 -SPSDNAVVLTNLLPGTEYVVSVSSVYEQH------ESTPLRGRQKTGLDSPTGIDFSDI 289
Query: 198 SDQSVEVWWKPVPAGRGKILGYQI-----FYTMTAVEDLDEWSQKSIPLT 242
+ S V W A R I GY+I ++ ED S+ SI LT
Sbjct: 290 TANSFTVHWI---APRATITGYRIRHHPEHFSGRPREDRVPHSRNSITLT 336
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 48/226 (21%), Positives = 89/226 (39%), Gaps = 67/226 (29%)
Query: 137 VIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPG--------PWSPKLSLMTARDMVRA 188
V+H + Q+ F NL G+EY+ V + P P+L+ ++ D+
Sbjct: 53 VVHAD--QSSCTFDNLSPGLEYNVSVYTVKDDKESVPISDTIIPEVPQLTDLSFVDI--- 107
Query: 189 PLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNIA 248
+D S+ + W P+ I+GY+I T+ A + + IP+ E +
Sbjct: 108 ---------TDSSIGLRWTPL--NSSTIIGYRI--TVVA-------AGEGIPIFEDFVDS 147
Query: 249 RI-FYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLSGKVTVK 307
+ +YT+T LE +Y ++V +NG G + +
Sbjct: 148 SVGYYTVTG----------------------LEPGIDYDISVITL-ING-GESAPTTLTQ 183
Query: 308 VKPEDVPLSLRAHDVSTHSMTLSWSPP---------IKLNPVKYKE 344
P LR ++ +M ++W+PP ++ +PVK +E
Sbjct: 184 QTAVPPPTDLRFTNIGPDTMRVTWAPPPSIDLTNFLVRYSPVKNEE 229
>pdb|2GEE|A Chain A, Crystal Structure Of Human Type Iii Fibronectin
Extradomain B And Domain 8
Length = 203
Score = 35.0 bits (79), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 31/145 (21%), Positives = 58/145 (40%), Gaps = 10/145 (6%)
Query: 24 ILGYRVKYGVREHTLK--ENLVNSKNMSFLITNLERGVEYEFRIAGQNHIGYGQETVRYY 81
I+GYR+ + E+ V+S + +T LE G++Y+ + + G T
Sbjct: 51 IIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVYTVKNGGESTPTT--- 107
Query: 82 XXXXXXXXXXXANISHHFQTPDVVCITWDPPLRTHRNGQIVLYN-VKFHKKIDANNVIHR 140
++ PD + +TW PP +V Y+ VK + + ++
Sbjct: 108 -LTQQTAVPPPTDLRFTNIGPDTMRVTWAPPPSIDLTNFLVRYSPVKNEEDVAELSI--- 163
Query: 141 NTTQTKAVFSNLEEGIEYSAEVQAI 165
+ + V +NL G EY V ++
Sbjct: 164 SPSDNAVVLTNLLPGTEYVVSVSSV 188
>pdb|4GH7|B Chain B, Crystal Structure Of Anticalin N7a In Complex With
Oncofetal Fibronectin Fragment Fn7b8
pdb|4GH7|D Chain D, Crystal Structure Of Anticalin N7a In Complex With
Oncofetal Fibronectin Fragment Fn7b8
Length = 285
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 59/146 (40%), Gaps = 12/146 (8%)
Query: 24 ILGYRVKYGVREHTLK--ENLVNSKNMSFLITNLERGVEYEFRIAGQNHIG-YGQETVRY 80
I+GYR+ + E+ V+S + +T LE G++Y+ + + G T+
Sbjct: 124 IIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVITLINGGESAPTTLTQ 183
Query: 81 YXXXXXXXXXXXANISHHFQTPDVVCITWDPPLRTHRNGQIVLYN-VKFHKKIDANNVIH 139
NI PD + +TW PP +V Y+ VK + + ++
Sbjct: 184 QTAVPPPTDLRFTNIG-----PDTMRVTWAPPPSIDLTNFLVRYSPVKNEEDVAELSI-- 236
Query: 140 RNTTQTKAVFSNLEEGIEYSAEVQAI 165
+ + V +NL G EY V ++
Sbjct: 237 -SPSDNAVVLTNLLPGTEYVVSVSSV 261
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 90/228 (39%), Gaps = 71/228 (31%)
Query: 137 VIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPG--------PWSPKLSLMTARDMVRA 188
V+H + Q+ F NL G+EY+ V + P P+L+ ++ D+
Sbjct: 53 VVHAD--QSSCTFDNLSPGLEYNVSVYTVKDDKESVPISDTIIPEVPQLTDLSFVDI--- 107
Query: 189 PLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNIA 248
+D S+ + W P+ I+GY+I T+ A + + IP+ E +
Sbjct: 108 ---------TDSSIGLRWTPL--NSSTIIGYRI--TVVA-------AGEGIPIFEDFVDS 147
Query: 249 RI-FYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLSGKVT-- 305
+ +YT+T LE +Y ++V +NG +T
Sbjct: 148 SVGYYTVTG----------------------LEPGIDYDISVITL-INGGESAPTTLTQQ 184
Query: 306 VKVKPEDVPLSLRAHDVSTHSMTLSWSPP---------IKLNPVKYKE 344
V P P LR ++ +M ++W+PP ++ +PVK +E
Sbjct: 185 TAVPP---PTDLRFTNIGPDTMRVTWAPPPSIDLTNFLVRYSPVKNEE 229
>pdb|2V5Y|A Chain A, Crystal Structure Of The Receptor Protein Tyrosine
Phosphatase Mu Ectodomain
Length = 731
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 30/77 (38%), Gaps = 9/77 (11%)
Query: 7 EVTIELVWSQPTQTYGEILGYRVKY-GVREHTLKENLVNSKN--------MSFLITNLER 57
E I L W +PTQTYG I Y + Y V + +L N FL L
Sbjct: 476 EEKIFLQWREPTQTYGVITLYEITYKAVSSFDPEIDLSNQSGRVSKLGNETHFLFFGLYP 535
Query: 58 GVEYEFRIAGQNHIGYG 74
G Y F I G+G
Sbjct: 536 GTTYSFTIRASTAKGFG 552
>pdb|1FNA|A Chain A, Crystal Structure Of The Tenth Type Iii Cell Adhesion
Module Of Human Fibronectin
Length = 91
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Query: 101 TPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANNVIHRNT---TQTKAVFSNLEEGIE 157
TP + I+WD P T R +I + + N+ + T +++ A S L+ G++
Sbjct: 9 TPTSLLISWDAPAVTVRYYRIT------YGETGGNSPVQEFTVPGSKSTATISGLKPGVD 62
Query: 158 YSAEVQAITKAGPGPWSPK 176
Y+ V A+T G P S K
Sbjct: 63 YTITVYAVTGRGDSPASSK 81
>pdb|1X5F|A Chain A, The Solution Structure Of The First Fibronectin Type Iii
Domain Of Human Neogenin
Length = 120
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 10 IELVWSQP-TQTYGEILGYRVKYGVREHTLKENLVNSKN---MSFLITNLERGVEYEFRI 65
I+L W P + +G+ L Y V Y +E +E + N+ + M I NL Y FR+
Sbjct: 34 IKLTWRTPASDPHGDNLTYSVFY-TKEGIARERVENTSHPGEMQVTIQNLMPATVYIFRV 92
Query: 66 AGQNHIGYGQETV 78
QN G G+ +
Sbjct: 93 MAQNKHGSGESSA 105
>pdb|1TDQ|A Chain A, Structural Basis For The Interactions Between Tenascins
And The C-Type Lectin Domains From Lecticans: Evidence
For A Cross-Linking Role For Tenascins
Length = 283
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 1 MLKEEPEVTIELVWSQPTQTYGEILGYRVKYGVREHTLKENLVNSKNMSFLITNLERGVE 60
M+ E +I L+W T+ G I YR+ + E V S+ +T+LE G E
Sbjct: 204 MVTASSETSISLIW---TKASGPIDHYRITFTPSSGISSEVTVPRDRTSYTLTDLEPGAE 260
Query: 61 YEFRIAGQ 68
Y I +
Sbjct: 261 YIISITAE 268
>pdb|1QR4|A Chain A, Two Fibronectin Type-Iii Domain Segment From Chicken
Tenascin
pdb|1QR4|B Chain B, Two Fibronectin Type-Iii Domain Segment From Chicken
Tenascin
Length = 186
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/160 (18%), Positives = 60/160 (37%), Gaps = 13/160 (8%)
Query: 7 EVTIELVWSQPTQTYGEILGYRVKYGVREHTLKENLVNSKNMSFLITNLERGVEYEFRIA 66
E T+ L W +P + YR+ Y E + + SF++ L+ G EY +
Sbjct: 20 ETTLSLRWRRPVAKFDR---YRLTYVSPSGKKNEMEIPVDSTSFILRGLDAGTEYTISLV 76
Query: 67 GQNHIGYGQETVRYYXXXXXXXXXXXANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNV 126
+ G+ + IS T + ++W PP ++ Y V
Sbjct: 77 AEK----GRHKSKPTTIKGSTVVGSPKGISFSDITENSATVSWTPP-----RSRVDSYRV 127
Query: 127 KFHKKIDAN-NVIHRNTTQTKAVFSNLEEGIEYSAEVQAI 165
+ NV+ + ++T+ L G++Y+ + ++
Sbjct: 128 SYVPITGGTPNVVTVDGSKTRTKLVKLVPGVDYNVNIISV 167
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 252 YTMTAVEDLDEWSQKSVPL-TESAELTSLEKFTEYAVAVAARTVNGLGRLSGKVTVKVKP 310
Y +T V + ++ +P+ + S L L+ TEY +++ A GR K T +K
Sbjct: 37 YRLTYVSPSGKKNEMEIPVDSTSFILRGLDAGTEYTISLVAEK----GRHKSKPTT-IKG 91
Query: 311 EDV---PLSLRAHDVSTHSMTLSWSPP 334
V P + D++ +S T+SW+PP
Sbjct: 92 STVVGSPKGISFSDITENSATVSWTPP 118
>pdb|1TTF|A Chain A, The Three-Dimensional Structure Of The Tenth Type Iii
Module Of Fibronectin: An Insight Into Rgd-Mediated
Interactions
pdb|1TTG|A Chain A, The Three-Dimensional Structure Of The Tenth Type Iii
Module Of Fibronectin: An Insight Into Rgd-Mediated
Interactions
Length = 94
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Query: 101 TPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANNVIHRNT---TQTKAVFSNLEEGIE 157
TP + I+WD P T R +I + + N+ + T +++ A S L+ G++
Sbjct: 14 TPTSLLISWDAPAVTVRYYRIT------YGETGGNSPVQEFTVPGSKSTATISGLKPGVD 67
Query: 158 YSAEVQAITKAGPGPWSPK 176
Y+ V A+T G P S K
Sbjct: 68 YTITVYAVTGRGDSPASSK 86
>pdb|2ED8|A Chain A, Solution Structure Of The Second Fibronectin Type Iii
Domain Of Human Netrin Receptor Dcc
Length = 106
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYGVREHTLKENLVNSKNMSFLITNLERGVEYEFRIAGQ 68
+I + W P G + GYR+ + T KE + +S+ + L++ EY R
Sbjct: 23 SILITWEPPAYANGPVQGYRL-FCTEVSTGKEQNIEVDGLSYKLEGLKKFTEYSLRFLAY 81
Query: 69 NHIGYGQET 77
N G G T
Sbjct: 82 NRYGPGVST 90
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Query: 94 NISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANNVIHRNTTQTKAVFSNLE 153
N+ +P + ITW+PP + NG + Y + F ++ + L+
Sbjct: 13 NLQAVSTSPTSILITWEPP--AYANGPVQGYRL-FCTEVSTGKEQNIEVDGLSYKLEGLK 69
Query: 154 EGIEYSAEVQAITKAGPGPWSPKLSLMTARD 184
+ EYS A + GPG + ++++T D
Sbjct: 70 KFTEYSLRFLAYNRYGPGVSTDDITVVTLSD 100
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 192 VKALATSDQSVEVWWKPVPAGRGKILGYQIFYT 224
++A++TS S+ + W+P G + GY++F T
Sbjct: 14 LQAVSTSPTSILITWEPPAYANGPVQGYRLFCT 46
>pdb|1X4Z|A Chain A, Solution Structure Of The 2nd Fibronectin Type Iii Domain
From Mouse Biregional Cell Adhesion
Molecule-RelatedDOWN- Regulated Oncogenes (Cdon) Binding
Protein
Length = 121
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 7 EVTIELVWSQPTQTYGEILGYRVKYG----VREHTLKENLVNSKNMSFLITNLERGVEYE 62
E ++ + W I +RV+Y V + L + + +S IT LE+G+ Y+
Sbjct: 31 ETSVYVTWIPRGNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSRLSVEITGLEKGISYK 90
Query: 63 FRIAGQNHIG 72
FR+ N +G
Sbjct: 91 FRVRALNMLG 100
>pdb|1X5L|A Chain A, Solution Structure Of The Second Fn3 Domain Of Eph
Receptor A8 Protein
Length = 111
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 7 EVTIELVWSQPTQTYGEILGYRVKYGVREHTLKE-NLVNSKNMSFLITNLERGVEYEFRI 65
+ ++ L+W +P Q G IL Y +KY ++ ++ + + + ++ L+ G Y F++
Sbjct: 24 QTSVSLLWQEPEQPNGIILEYEIKYYEKDKEMQSYSTLKAVTTRATVSGLKPGTRYVFQV 83
Query: 66 AGQNHIGYGQ 75
+ G G+
Sbjct: 84 RARTSAGCGR 93
>pdb|3FL7|A Chain A, Crystal Structure Of The Human Ephrin A2 Ectodomain
Length = 536
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 60/165 (36%), Gaps = 13/165 (7%)
Query: 8 VTIELVWSQPTQTYGEILGYRVKYGVREHTLKENLVNSKNMSFLITNLERGVEYEFRIAG 67
VT E W P V+Y H L V +++LE + Y F +
Sbjct: 369 VTCEQCW--PESGECGPCEASVRYSEPPHGLTRTSVT-------VSDLEPHMNYTFTVEA 419
Query: 68 QNHIGYGQETVRYYXXXXXXXXXXXANISHHFQTPDVVCITWD-PPLRTHRNGQIVLYNV 126
+N + + + + ++ + ++W PP + R + Y V
Sbjct: 420 RNGVSGLVTSRSFRTASVSINQTEPPKVRLEGRSTTSLSVSWSIPPPQQSR---VWKYEV 476
Query: 127 KFHKKIDANNVIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPG 171
+ KK D+N+ R T +L Y +VQA+T+ G G
Sbjct: 477 TYRKKGDSNSYNVRRTEGFSVTLDDLAPDTTYLVQVQALTQEGQG 521
>pdb|2X11|A Chain A, Crystal Structure Of The Complete Epha2 Ectodomain In
Complex With Ephrin A5 Receptor Binding Domain
Length = 545
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 60/165 (36%), Gaps = 13/165 (7%)
Query: 8 VTIELVWSQPTQTYGEILGYRVKYGVREHTLKENLVNSKNMSFLITNLERGVEYEFRIAG 67
VT E W P V+Y H L V +++LE + Y F +
Sbjct: 366 VTCEQCW--PESGECGPCEASVRYSEPPHGLTRTSVT-------VSDLEPHMNYTFTVEA 416
Query: 68 QNHIGYGQETVRYYXXXXXXXXXXXANISHHFQTPDVVCITWD-PPLRTHRNGQIVLYNV 126
+N + + + + ++ + ++W PP + R + Y V
Sbjct: 417 RNGVSGLVTSRSFRTASVSINQTEPPKVRLEGRSTTSLSVSWSIPPPQQSR---VWKYEV 473
Query: 127 KFHKKIDANNVIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPG 171
+ KK D+N+ R T +L Y +VQA+T+ G G
Sbjct: 474 TYRKKGDSNSYNVRRTEGFSVTLDDLAPDTTYLVQVQALTQEGQG 518
>pdb|2DM4|A Chain A, Solution Structure Of The Second Fn3 Domain Of Human
SorlaLR11
Length = 108
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Query: 104 VVCITWDPPLRTHRNGQIVLYNVKFHK---KIDANNVIHRNTTQTKAVFSNLEEGIEYSA 160
V+ W PP+ TH G I Y V++ + K+ A+ N T+ K NL Y+
Sbjct: 25 VIVGHWAPPIHTH--GLIREYIVEYSRSGSKMWASQRAASNFTEIK----NLLVNTLYTV 78
Query: 161 EVQAITKAGPGPWSPKLSLMTAR 183
V A+T G G WS S+ T +
Sbjct: 79 RVAAVTSRGIGNWSDSKSITTIK 101
>pdb|2EDE|A Chain A, Solution Structure Of The Sixth Fibronectin Type Iii
Domain Of Human Netrin Receptor Dcc
Length = 114
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 200 QSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSI 239
++V V W+P GKI Y +FYT+ +D+W ++I
Sbjct: 25 RAVIVSWQPPLEANGKITAYILFYTLDKNIPIDDWIMETI 64
>pdb|1BJ8|A Chain A, Third N-Terminal Domain Of Gp130, Nmr, Minimized Average
Structure
Length = 109
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 4 EEPEVTIELVWSQPTQTYGEILGYRVKYGVREHTLKENL----VNSKNMSFLITNLERGV 59
EE ++L W+ P+ IL Y ++Y ++ + + S SF + +L+
Sbjct: 18 EELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFT 77
Query: 60 EYEFRIAGQNHIGYG 74
EY FRI G G
Sbjct: 78 EYVFRIRCMKEDGKG 92
>pdb|1BPV|A Chain A, Titin Module A71 From Human Cardiac Muscle, Nmr, 50
Structures
Length = 112
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 9 TIELVWSQPTQTYG-EILGYRVKYGVREHT--LKENLVNSKNMSFLITNLERGVEYEFRI 65
T+ L W++P T G +I Y V+ + LK N N F ++ L YEFR+
Sbjct: 26 TVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEFTVSGLTEDAAYEFRV 85
Query: 66 AGQNHIG 72
+N G
Sbjct: 86 IAKNAAG 92
>pdb|1UEN|A Chain A, Solution Structure Of The Third Fibronectin Iii Domain Of
Human Kiaa0343 Protein
Length = 125
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 42/113 (37%), Gaps = 27/113 (23%)
Query: 188 APLGVKALATSDQSVEVWWKPVP--AGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESS 245
AP V+ + EV W PVP + RG + GY+I+Y W +S
Sbjct: 17 APGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYY----------WKTQSSSKRNRR 66
Query: 246 NIARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLG 298
+I + T + L LE F+ Y + V R VNG G
Sbjct: 67 HIEKKILTFQGSKT-------------HGMLPGLEPFSHYTLNV--RVVNGKG 104
>pdb|1BQU|A Chain A, Cytokyne-Binding Region Of Gp130
pdb|1BQU|B Chain B, Cytokyne-Binding Region Of Gp130
Length = 215
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 4 EEPEVTIELVWSQPTQTYGEILGYRVKYGVREHTLKENL----VNSKNMSFLITNLERGV 59
EE ++L W+ P+ IL Y ++Y ++ + + S SF + +L+
Sbjct: 116 EELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFT 175
Query: 60 EYEFRIAGQNHIGYG 74
EY FRI G G
Sbjct: 176 EYVFRIRCMKEDGKG 190
>pdb|2X10|A Chain A, Crystal Structure Of The Complete Epha2 Ectodomain
Length = 545
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 59/165 (35%), Gaps = 13/165 (7%)
Query: 8 VTIELVWSQPTQTYGEILGYRVKYGVREHTLKENLVNSKNMSFLITNLERGVEYEFRIAG 67
VT E W P V+Y H L V +++LE Y F +
Sbjct: 366 VTCEQCW--PESGECGPCEASVRYSEPPHGLTRTSVT-------VSDLEPHXNYTFTVEA 416
Query: 68 QNHIGYGQETVRYYXXXXXXXXXXXANISHHFQTPDVVCITWD-PPLRTHRNGQIVLYNV 126
+N + + + + ++ + ++W PP + R + Y V
Sbjct: 417 RNGVSGLVTSRSFRTASVSINQTEPPKVRLEGRSTTSLSVSWSIPPPQQSR---VWKYEV 473
Query: 127 KFHKKIDANNVIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPG 171
+ KK D+N+ R T +L Y +VQA+T+ G G
Sbjct: 474 TYRKKGDSNSYNVRRTEGFSVTLDDLAPDTTYLVQVQALTQEGQG 518
>pdb|1PVH|A Chain A, Crystal Structure Of Leukemia Inhibitory Factor In Complex
With Gp130
pdb|1PVH|C Chain C, Crystal Structure Of Leukemia Inhibitory Factor In Complex
With Gp130
Length = 201
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 4 EEPEVTIELVWSQPTQTYGEILGYRVKYGVREHTLKENL----VNSKNMSFLITNLERGV 59
EE ++L W+ P+ IL Y ++Y ++ + + S SF + +L+
Sbjct: 112 EELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFT 171
Query: 60 EYEFRIAGQNHIGYG 74
EY FRI G G
Sbjct: 172 EYVFRIRCMKEDGKG 186
>pdb|3L5H|A Chain A, Crystal Structure Of The Full Ectodomain Of Human Gp130:
New Insights Into The Molecular Assembly Of Receptor
Complexes
Length = 589
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 4 EEPEVTIELVWSQPTQTYGEILGYRVKYGVREHTLKENL----VNSKNMSFLITNLERGV 59
EE ++L W+ P+ IL Y ++Y ++ + + S SF + +L+
Sbjct: 211 EELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFT 270
Query: 60 EYEFRIAGQNHIGYG 74
EY FRI G G
Sbjct: 271 EYVFRIRCMKEDGKG 285
>pdb|1P9M|A Chain A, Crystal Structure Of The Hexameric Human Il-6/il-6 Alpha
Receptor/gp130 Complex
Length = 299
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 4 EEPEVTIELVWSQPTQTYGEILGYRVKYGVREHTLKENL----VNSKNMSFLITNLERGV 59
EE ++L W+ P+ IL Y ++Y ++ + + S SF + +L+
Sbjct: 212 EELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFT 271
Query: 60 EYEFRIAGQNHIGYG 74
EY FRI G G
Sbjct: 272 EYVFRIRCMKEDGKG 286
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 2/103 (1%)
Query: 137 VIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTARDMVRAPLGVKALA 196
++ + QT V +NLE Y V A+ G G +S T +P +
Sbjct: 244 IVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPPSIHGQP 303
Query: 197 TSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSI 239
+S +S ++ G IL Y + Y E D+W +K +
Sbjct: 304 SSGKSFKLSITKQDDGGAPILEYIVKYRSKDKE--DQWLEKKV 344
>pdb|1I1R|A Chain A, Crystal Structure Of A CytokineRECEPTOR COMPLEX
Length = 303
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 4 EEPEVTIELVWSQPTQTYGEILGYRVKYGVREHTLKENL----VNSKNMSFLITNLERGV 59
EE ++L W+ P+ IL Y ++Y ++ + + S SF + +L+
Sbjct: 212 EELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFT 271
Query: 60 EYEFRIAGQNHIGYG 74
EY FRI G G
Sbjct: 272 EYVFRIRCMKEDGKG 286
>pdb|2OCF|D Chain D, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Estradiol And The E2#23 Fn3 Monobody
Length = 121
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
Query: 101 TPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANNVIHRNT---TQTKAVFSNLEEGIE 157
TP + I+WD P T R +I + + N+ + T +++ A S L+ G++
Sbjct: 41 TPTSLLISWDAPAVTVRYYRIT------YGETGGNSPVQEFTVPGSKSTATISGLKPGVD 94
Query: 158 YSAEVQAIT 166
Y+ V A+T
Sbjct: 95 YTITVYAVT 103
>pdb|1WFO|A Chain A, The Eighth Fn3 Domain Of Human Sidekick-2
Length = 130
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 6 PEV---TIELVWSQPTQTYGEILGYRVKYGVREHTLKENLVNSKNMS---FLITNLERGV 59
PEV ++ L+W P G IL Y++ + + T V S + T L+
Sbjct: 37 PEVRTTSVRLIWQPPAAPNGIILAYQITHRLNTTTANTATVEVLAPSARQYTATGLKPES 96
Query: 60 EYEFRIAGQNHIGYGQ 75
Y FRI Q G+G+
Sbjct: 97 VYLFRITAQTRKGWGE 112
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 172 PWSPKLSLMTARDMVRAPLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTM 225
P P + T D+ P+G+ SV + W+P A G IL YQI + +
Sbjct: 14 PSHPPILERTLDDVPGPPMGILFPEVRTTSVRLIWQPPAAPNGIILAYQITHRL 67
>pdb|2ED7|A Chain A, Solution Structure Of The First Fibronectin Type Iii
Domain Of Human Netrin Receptor Dcc
Length = 119
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 10 IELVWSQPTQTYGEILGYRVKYGVREHTLKENLVNSK---NMSFLITNLERGVEYEFRIA 66
+ L W P + G I + V + RE +E +N+ ++ + NL+ Y FR+
Sbjct: 34 VRLSWRPPAEAKGNIQTFTVFFS-REGDNRERALNTTQPGSLQLTVGNLKPEAMYTFRVV 92
Query: 67 GQNHIGYGQET 77
N G G+ +
Sbjct: 93 AYNEWGPGESS 103
>pdb|3DTT|A Chain A, Crystal Structure Of A Putative F420 Dependent
Nadp-Reductase (Arth_0613) From Arthrobacter Sp. Fb24 At
1.70 A Resolution
pdb|3DTT|B Chain B, Crystal Structure Of A Putative F420 Dependent
Nadp-Reductase (Arth_0613) From Arthrobacter Sp. Fb24 At
1.70 A Resolution
Length = 245
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 15/68 (22%)
Query: 283 TEYAVAVAARTVNGLGRLSGKVTVKVKPEDVPLSLRAHDVSTHSMTLSWSPPIKLNPVKY 342
TE A ++AA T G L+GK+ V + + + S P LNPV
Sbjct: 98 TEGASSIAALTAAGAENLAGKILVDI---------------ANPLDFSHGXPPTLNPVNT 142
Query: 343 KEVSEKIQ 350
+ E+IQ
Sbjct: 143 DSLGEQIQ 150
>pdb|3P4L|A Chain A, Crystal Structure Of A Hemojuvelin-Binding Fragment Of
Neogenin
Length = 211
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 54/138 (39%), Gaps = 6/138 (4%)
Query: 103 DVVCITW-DPPLRTHRN-GQIVLYNVKFHKKIDANNVI-HRNTTQTKAVFSNLEEGIEYS 159
D + ITW D L H+ Y V++ I AN + N T + + L+ Y
Sbjct: 19 DTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTLSYLVTGLKPNTLYE 78
Query: 160 AEVQAITKAGPGPWSPKLSLMTARDMVRAP---LGVKALATSDQSVEVWWKPVPAGRGKI 216
V WS T + +P + V + +++ V W+P GKI
Sbjct: 79 FSVMVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEANGKI 138
Query: 217 LGYQIFYTMTAVEDLDEW 234
GY I+Y+ ++ +W
Sbjct: 139 TGYIIYYSTDVNAEIHDW 156
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 3 KEEPEVTIELVWSQPTQTYGEILGYRVKYGVREHT-----LKENLVNSKNMSFLITNLER 57
KE TI + W P++ G+I GY + Y + + E +V ++ ++ I L
Sbjct: 117 KEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPVVGNR-LTHQIQELTL 175
Query: 58 GVEYEFRIAGQNHIGYG 74
Y F+I +N G G
Sbjct: 176 DTPYYFKIQARNSKGMG 192
>pdb|2DTG|E Chain E, Insulin Receptor (Ir) Ectodomain In Complex With Fab's
Length = 897
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 15/88 (17%)
Query: 95 ISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANNVIHRNTTQTKAVFSNLEE 154
++H +VV + W P NG IVLY V + + D +H T+ F+ LE
Sbjct: 799 VTHEIFENNVVHLMWQEP--KEPNGLIVLYEVSYRRYGDEE--LH--LCDTRKHFA-LER 851
Query: 155 GI--------EYSAEVQAITKAGPGPWS 174
G YS ++A + AG G W+
Sbjct: 852 GCRLRGLSPGNYSVRIRATSLAGNGSWT 879
>pdb|1X5A|A Chain A, The Solution Structure Of The Second Fibronectin Type Iii
Domain Of Mouse Ephrin Type-A Receptor 1
Length = 107
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 139 HRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTA 182
H+ + + + + L+ Y V+ +T GPGP+SP T+
Sbjct: 56 HQMVLEPRVLLTKLQPDTTYIVRVRTLTPLGPGPFSPDHEFRTS 99
>pdb|3LOH|E Chain E, Structure Of The Insulin Receptor Ectodomain, Including Ct
P
Length = 917
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 15/88 (17%)
Query: 95 ISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANNVIHRNTTQTKAVFSNLEE 154
++H +VV + W P NG IVLY V + + D +H T+ F+ LE
Sbjct: 818 VTHEIFENNVVHLMWQEP--KEPNGLIVLYEVSYRRYGDEE--LH--LCDTRKHFA-LER 870
Query: 155 GI--------EYSAEVQAITKAGPGPWS 174
G YS ++A + AG G W+
Sbjct: 871 GCRLRGLSPGNYSVRIRATSLAGNGSWT 898
>pdb|1X5Z|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of
Human Protein Tyrosine Phosphatase, Receptor Type, D
Isoform 4 Variant
Length = 115
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Query: 2 LKEEPEV--TIELVWSQPTQTYGEILGYRVKYGVREHTLKENLVNSKNMSFLITNLERGV 59
K EPE +I L W+ P I Y + Y EH ++ + S+ + L+
Sbjct: 24 FKAEPESETSILLSWTPPRSD--TIANYELVYKDGEHGEEQRITIEPGTSYRLQGLKPNS 81
Query: 60 EYEFRIAGQNHIGYGQETV 78
Y FR+A ++ G G T
Sbjct: 82 LYYFRLAARSPQGLGASTA 100
>pdb|1X5K|A Chain A, The Solution Structure Of The Sixth Fibronectin Type Iii
Domain Of Human Neogenin
Length = 124
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 200 QSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEW 234
+++ V W+P GKI GY I+Y+ ++ +W
Sbjct: 35 KTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDW 69
>pdb|1X5I|A Chain A, The Solution Structure Of The Fourth Fibronectin Type Iii
Domain Of Human Neogenin
Length = 126
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Query: 2 LKEEPEVT-IELVWSQPTQTYGEILGYRVKYGVREHTLKENLVNSKNMSFLITNLERGVE 60
L P VT I + W+ P + GY + YG+ + V+ K + I NL+
Sbjct: 34 LHVRPLVTSIVVSWTPPENQNIVVRGYAIGYGIGSPHAQTIKVDYKQRYYTIENLDPSSH 93
Query: 61 YEFRIAGQNHIGYG 74
Y + N++G G
Sbjct: 94 YVITLKAFNNVGEG 107
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein
Motor Domain
pdb|3VKG|B Chain B, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein
Motor Domain
Length = 3245
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 15/90 (16%)
Query: 269 PLTESAELTSLEK-FTEYAVAVAARTVNGLGRLSGKVTVKVKPEDVPLSLRAHDVSTHSM 327
P+T++ T ++ + +Y + V ++N + K+ +D+PL S+
Sbjct: 810 PITDAESKTKADQIYCQYEIGVLLNSIND------TMIPKLVADDIPL--------IQSL 855
Query: 328 TLSWSPPIKLNPVKYKEVSEKIQERRLQKY 357
L P +L P++ ++ +KIQE Q++
Sbjct: 856 LLDVFPGSQLQPIQMDQLRKKIQEIAKQRH 885
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
pdb|3VKH|B Chain B, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
Length = 3367
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 15/90 (16%)
Query: 269 PLTESAELTSLEK-FTEYAVAVAARTVNGLGRLSGKVTVKVKPEDVPLSLRAHDVSTHSM 327
P+T++ T ++ + +Y + V ++N + K+ +D+PL S+
Sbjct: 810 PITDAESKTKADQIYCQYEIGVLLNSIND------TMIPKLVADDIPL--------IQSL 855
Query: 328 TLSWSPPIKLNPVKYKEVSEKIQERRLQKY 357
L P +L P++ ++ +KIQE Q++
Sbjct: 856 LLDVFPGSQLQPIQMDQLRKKIQEIAKQRH 885
>pdb|3ZSS|A Chain A, Apo Form Of Glge Isoform 1 From Streptomyces Coelicolor
pdb|3ZSS|B Chain B, Apo Form Of Glge Isoform 1 From Streptomyces Coelicolor
pdb|3ZSS|C Chain C, Apo Form Of Glge Isoform 1 From Streptomyces Coelicolor
pdb|3ZSS|D Chain D, Apo Form Of Glge Isoform 1 From Streptomyces Coelicolor
pdb|3ZST|A Chain A, Glge Isoform 1 From Streptomyces Coelicolor With
Alpha-Cyclodextrin Bound
pdb|3ZST|B Chain B, Glge Isoform 1 From Streptomyces Coelicolor With
Alpha-Cyclodextrin Bound
pdb|3ZT5|A Chain A, Glge Isoform 1 From Streptomyces Coelicolor With Maltose
Bound
pdb|3ZT5|B Chain B, Glge Isoform 1 From Streptomyces Coelicolor With Maltose
Bound
pdb|3ZT5|C Chain C, Glge Isoform 1 From Streptomyces Coelicolor With Maltose
Bound
pdb|3ZT5|D Chain D, Glge Isoform 1 From Streptomyces Coelicolor With Maltose
Bound
pdb|3ZT6|A Chain A, Glge Isoform 1 From Streptomyces Coelicolor With Alpha-
Cyclodextrin And Maltose Bound
pdb|3ZT6|B Chain B, Glge Isoform 1 From Streptomyces Coelicolor With Alpha-
Cyclodextrin And Maltose Bound
pdb|3ZT6|C Chain C, Glge Isoform 1 From Streptomyces Coelicolor With Alpha-
Cyclodextrin And Maltose Bound
pdb|3ZT6|D Chain D, Glge Isoform 1 From Streptomyces Coelicolor With Alpha-
Cyclodextrin And Maltose Bound
pdb|3ZT7|A Chain A, Glge Isoform 1 From Streptomyces Coelicolor With
Beta-Cyclodextrin And Maltose Bound
pdb|3ZT7|B Chain B, Glge Isoform 1 From Streptomyces Coelicolor With
Beta-Cyclodextrin And Maltose Bound
pdb|3ZT7|C Chain C, Glge Isoform 1 From Streptomyces Coelicolor With
Beta-Cyclodextrin And Maltose Bound
pdb|3ZT7|D Chain D, Glge Isoform 1 From Streptomyces Coelicolor With
Beta-Cyclodextrin And Maltose Bound
Length = 695
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 33/91 (36%), Gaps = 16/91 (17%)
Query: 132 IDANNVIHRNTTQTKAVFSNLEEGIEYSAEV-----QAI--------TKAGPGPWSPKLS 178
+D V+ R KAV E E SA V A+ + PGPW+P
Sbjct: 44 LDVRPVVQRGRRPAKAVTG---ESFEVSATVFREGHDAVGANVVLRDPRGRPGPWTPMRE 100
Query: 179 LMTARDMVRAPLGVKALATSDQSVEVWWKPV 209
L D A + T +VE W PV
Sbjct: 101 LAPGTDRWGATVTAGETGTWSYTVEAWGDPV 131
>pdb|1SNZ|A Chain A, Crystal Structure Of Apo Human Galactose Mutarotase
pdb|1SNZ|B Chain B, Crystal Structure Of Apo Human Galactose Mutarotase
pdb|1SO0|A Chain A, Crystal Structure Of Human Galactose Mutarotase Complexed
With Galactose
pdb|1SO0|B Chain B, Crystal Structure Of Human Galactose Mutarotase Complexed
With Galactose
pdb|1SO0|C Chain C, Crystal Structure Of Human Galactose Mutarotase Complexed
With Galactose
pdb|1SO0|D Chain D, Crystal Structure Of Human Galactose Mutarotase Complexed
With Galactose
Length = 344
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 9/104 (8%)
Query: 253 TMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLSGKVTVKVKPED 312
T+TA+E D + S + AEL + Y AV R N R++ K T KV ++
Sbjct: 41 TITALEVKDRQGRASDVVLGFAELEGYLQKQPYFGAVIGRVAN---RIA-KGTFKVDGKE 96
Query: 313 VPLSLRAHDVSTHSMT-----LSWSPPIKLNPVKYKEVSEKIQE 351
L++ S H + W+P + N V++ +S +E
Sbjct: 97 YHLAINKEPNSLHGGVRGFDKVLWTPRVLSNGVQFSRISPDGEE 140
>pdb|2P22|C Chain C, Structure Of The Yeast Escrt-i Heterotetramer Core
Length = 192
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 113 LRTHRNGQIVLYNVKFHKKIDANNVIHRNTTQTKAVFSNLEEGIEYSAEVQAI 165
++THR+ Q+ LY KF+ D IH Q K + N E+ E +VQA+
Sbjct: 47 IQTHRH-QLELYVTKFNPLTDFAGKIHAFRDQFKQLEENFEDLHEQKDKVQAL 98
>pdb|3K7G|B Chain B, Crystal Structure Of The Indian Hedgehog N-Terminal
Signalling Domain
Length = 187
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 333 PPIKLNPVKYKEVSEKIQERRLQKYGQY 360
PP KL P+ YK+ S + E+ L G+Y
Sbjct: 25 PPRKLVPLAYKQFSPNVPEKTLGASGRY 52
>pdb|3K7I|B Chain B, Crystal Structure Of The E131k Mutant Of The Indian
Hedgehog N- Terminal Signalling Domain
Length = 187
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 333 PPIKLNPVKYKEVSEKIQERRLQKYGQY 360
PP KL P+ YK+ S + E+ L G+Y
Sbjct: 25 PPRKLVPLAYKQFSPNVPEKTLGASGRY 52
>pdb|3K7H|B Chain B, Crystal Structure Of The E95k Mutant Of The Indian
Hedgehog N-Terminal Signalling Domain
Length = 187
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 333 PPIKLNPVKYKEVSEKIQERRLQKYGQY 360
PP KL P+ YK+ S + E+ L G+Y
Sbjct: 25 PPRKLVPLAYKQFSPNVPEKTLGASGRY 52
>pdb|2YRZ|A Chain A, Solution Structure Of The Fibronectin Type Iii Domain Of
Human Integrin Beta-4
Length = 118
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
Query: 9 TIELVWSQPTQTYGEILGYRVKY----GVREHTLKENLVNSKNMSFLITNLERGVEYEFR 64
++ + W +P + + GY V+Y G H L N+ N S ++ +L Y FR
Sbjct: 33 SLRVSWQEP-RCERPLQGYSVEYQLLNGGELHRL--NIPNPAQTSVVVEDLLPNHSYVFR 89
Query: 65 IAGQNHIGYGQE 76
+ Q+ G+G+E
Sbjct: 90 VRAQSQEGWGRE 101
>pdb|3K7J|B Chain B, Crystal Structure Of The D100e Mutant Of The Indian
Hedgehog N- Terminal Signalling Domain
Length = 187
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 333 PPIKLNPVKYKEVSEKIQERRLQKYGQY 360
PP KL P+ YK+ S + E+ L G+Y
Sbjct: 25 PPRKLVPLAYKQFSPNVPEKTLGASGRY 52
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,311,050
Number of Sequences: 62578
Number of extensions: 467284
Number of successful extensions: 1315
Number of sequences better than 100.0: 73
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 1171
Number of HSP's gapped (non-prelim): 163
length of query: 427
length of database: 14,973,337
effective HSP length: 102
effective length of query: 325
effective length of database: 8,590,381
effective search space: 2791873825
effective search space used: 2791873825
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)