RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8774
(427 letters)
>gnl|CDD|214495 smart00060, FN3, Fibronectin type 3 domain. One of three types of
internal repeat within the plasma protein, fibronectin.
The tenth fibronectin type III repeat contains a RGD
cell recognition sequence in a flexible loop between 2
strands. Type III modules are present in both
extracellular and intracellular proteins.
Length = 83
Score = 59.2 bits (143), Expect = 2e-11
Identities = 23/82 (28%), Positives = 39/82 (47%)
Query: 90 GPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANNVIHRNTTQTKAVF 149
PP+N+ T V ++W+PP G IV Y V++ ++ ++ + T
Sbjct: 2 SPPSNLRVTDVTSTSVTLSWEPPPDDGITGYIVGYRVEYREEGSEWKEVNVTPSSTSYTL 61
Query: 150 SNLEEGIEYSAEVQAITKAGPG 171
+ L+ G EY V+A+ AG G
Sbjct: 62 TGLKPGTEYEFRVRAVNGAGEG 83
Score = 50.3 bits (120), Expect = 4e-08
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 9 TIELVWSQP--TQTYGEILGYRVKYGVREHTLKENLVNSKNMSFLITNLERGVEYEFRIA 66
++ L W P G I+GYRV+Y KE V + S+ +T L+ G EYEFR+
Sbjct: 16 SVTLSWEPPPDDGITGYIVGYRVEYREEGSEWKEVNVTPSSTSYTLTGLKPGTEYEFRVR 75
Query: 67 GQNHIGYG 74
N G G
Sbjct: 76 AVNGAGEG 83
Score = 38.7 bits (90), Expect = 4e-04
Identities = 24/111 (21%), Positives = 35/111 (31%), Gaps = 30/111 (27%)
Query: 188 APLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNI 247
P ++ + SV + W+P P GY + Y + E+ EW +
Sbjct: 3 PPSNLRVTDVTSTSVTLSWEPPPDDGI--TGYIVGYRVEYREEGSEWKE----------- 49
Query: 248 ARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLG 298
P + S LT L+ TEY V A G G
Sbjct: 50 -----------------VNVTPSSTSYTLTGLKPGTEYEFRVRAVNGAGEG 83
Score = 33.4 bits (76), Expect = 0.032
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 314 PLSLRAHDVSTHSMTLSWSPPIKLNPVKY 342
P +LR DV++ S+TLSW PP Y
Sbjct: 4 PSNLRVTDVTSTSVTLSWEPPPDDGITGY 32
>gnl|CDD|238020 cd00063, FN3, Fibronectin type 3 domain; One of three types of
internal repeats found in the plasma protein
fibronectin. Its tenth fibronectin type III repeat
contains an RGD cell recognition sequence in a flexible
loop between 2 strands. Approximately 2% of all animal
proteins contain the FN3 repeat; including extracellular
and intracellular proteins, membrane spanning cytokine
receptors, growth hormone receptors, tyrosine
phosphatase receptors, and adhesion molecules. FN3-like
domains are also found in bacterial glycosyl hydrolases.
Length = 93
Score = 56.7 bits (137), Expect = 2e-10
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
Query: 90 GPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDAN--NVIHRNTTQTKA 147
PP N+ T V ++W PP G I Y V++ +K + V ++T
Sbjct: 2 SPPTNLRVTDVTSTSVTLSWTPP--EDDGGPITGYVVEYREKGSGDWKEVEVTPGSETSY 59
Query: 148 VFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMT 181
+ L+ G EY V+A+ G P S +++ T
Sbjct: 60 TLTGLKPGTEYEFRVRAVNGGGESPPSESVTVTT 93
Score = 50.6 bits (121), Expect = 4e-08
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 9 TIELVWSQPTQTYGEILGYRVKY--GVREHTLKENLVNSKNMSFLITNLERGVEYEFRIA 66
++ L W+ P G I GY V+Y + + S+ +T L+ G EYEFR+
Sbjct: 16 SVTLSWTPPEDDGGPITGYVVEYREKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVR 75
Query: 67 GQNHIGYGQ--ETVRYYT 82
N G E+V T
Sbjct: 76 AVNGGGESPPSESVTVTT 93
Score = 47.9 bits (114), Expect = 3e-07
Identities = 25/121 (20%), Positives = 35/121 (28%), Gaps = 30/121 (24%)
Query: 188 APLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNI 247
P ++ + SV + W P G I GY + Y +W +
Sbjct: 3 PPTNLRVTDVTSTSVTLSWTPPEDDGGPITGYVVEYREK---GSGDWKE----------- 48
Query: 248 ARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLSGKVTVK 307
+ + S LT L+ TEY V A G S VTV
Sbjct: 49 ----------------VEVTPGSETSYTLTGLKPGTEYEFRVRAVNGGGESPPSESVTVT 92
Query: 308 V 308
Sbjct: 93 T 93
Score = 32.1 bits (73), Expect = 0.11
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 312 DVPLSLRAHDVSTHSMTLSWSPP 334
P +LR DV++ S+TLSW+PP
Sbjct: 2 SPPTNLRVTDVTSTSVTLSWTPP 24
>gnl|CDD|200951 pfam00041, fn3, Fibronectin type III domain.
Length = 84
Score = 53.6 bits (129), Expect = 2e-09
Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 5/87 (5%)
Query: 90 GPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANNVIHRNT--TQTKA 147
P N++ T + ++W PP NG I Y V++ T T
Sbjct: 1 SAPTNLTVTDVTSTSLTLSWSPP---PGNGPITGYEVEYRPVNGGEEWKEITVPGTTTSY 57
Query: 148 VFSNLEEGIEYSAEVQAITKAGPGPWS 174
+ L+ G EY VQA+ AG GP S
Sbjct: 58 TLTGLKPGTEYEVRVQAVNGAGEGPPS 84
Score = 47.0 bits (112), Expect = 5e-07
Identities = 30/114 (26%), Positives = 42/114 (36%), Gaps = 31/114 (27%)
Query: 188 APLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNI 247
AP + + S+ + W P P G G I GY++ Y V +EW + ++P T +
Sbjct: 2 APTNLTVTDVTSTSLTLSWSP-PPGNGPITGYEVEYRP--VNGGEEWKEITVPGTTT--- 55
Query: 248 ARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLS 301
S LT L+ TEY V V A G G S
Sbjct: 56 -------------------------SYTLTGLKPGTEYEVRVQAVNGAGEGPPS 84
Score = 46.3 bits (110), Expect = 8e-07
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYGVREHTLKENLVNSKN--MSFLITNLERGVEYEFRIA 66
++ L WS P G I GY V+Y + + S+ +T L+ G EYE R+
Sbjct: 15 SLTLSWSPPPGN-GPITGYEVEYRPVNGGEEWKEITVPGTTTSYTLTGLKPGTEYEVRVQ 73
Query: 67 GQNHIGYGQET 77
N G G +
Sbjct: 74 AVNGAGEGPPS 84
Score = 31.6 bits (72), Expect = 0.11
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 312 DVPLSLRAHDVSTHSMTLSWSPPIKLNPVKYKEV 345
P +L DV++ S+TLSWSPP P+ EV
Sbjct: 1 SAPTNLTVTDVTSTSLTLSWSPPPGNGPITGYEV 34
>gnl|CDD|216678 pfam01750, HycI, Hydrogenase maturation protease. The family
consists of hydrogenase maturation proteases. In E. coli
HypI the hydrogenase maturation protease is involved in
processing of HypE the large subunit of hydrogenases 3,
by cleavage of its C-terminal.
Length = 128
Score = 30.7 bits (70), Expect = 0.54
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 302 GKVTVKVKPEDVPLSLRAHDVSTHSMTLS 330
G V + E+VP L+A +S H + L
Sbjct: 52 GTV-RILDVEEVPKFLKAKKMSAHQLGLQ 79
>gnl|CDD|220166 pfam09294, Interfer-bind, Interferon-alpha/beta receptor,
fibronectin type III. Members of this family adopt a
secondary structure consisting of seven beta-strands
arranged in an immunoglobulin-like beta-sandwich, in a
Greek-key topology. They are required for binding to
interferon-alpha.
Length = 106
Score = 28.9 bits (65), Expect = 1.7
Identities = 23/99 (23%), Positives = 34/99 (34%), Gaps = 16/99 (16%)
Query: 90 GPPA-NISHHFQTPDVVCITWDPPLRTHRNG----------QIVLYNVKFHKKIDANNVI 138
GPP N+ + +T PPL R G + Y V + K
Sbjct: 4 GPPEVNLE---VEGTSLNVTIKPPLTPLRKGGKNLSLRDIYPSLKYRVSYWKNSSNGEKK 60
Query: 139 HRNTTQTKAVFSNLEEGIEY--SAEVQAITKAGPGPWSP 175
+T + V S+LE G Y S + + + SP
Sbjct: 61 ETESTNSFVVLSDLEPGTTYCVSVQAFSPSLNRKSEPSP 99
>gnl|CDD|223752 COG0680, HyaD, Ni,Fe-hydrogenase maturation factor [Energy
production and conversion].
Length = 160
Score = 29.6 bits (67), Expect = 1.9
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Query: 302 GKVTVKVKPEDVPLSLRAHDVSTHSMTLSWSPPIKLNPVKYK 343
G+V + PE++P A S H + S + L
Sbjct: 72 GEV-RIIDPEEIPAYSSASKDSAHEL--PLSELLALLKELGG 110
>gnl|CDD|238685 cd01389, MATA_HMG-box, MATA_HMG-box, class I member of the HMG-box
superfamily of DNA-binding proteins. These proteins
contain a single HMG box, and bind the minor groove of
DNA in a highly sequence-specific manner. Members
include the fungal mating type gene products MC, MATA1
and Ste11.
Length = 77
Score = 27.2 bits (61), Expect = 3.5
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 341 KYKEVSEKIQERRLQKYGQYRY 362
YKE++E+ +ER ++Y Y+Y
Sbjct: 50 YYKELAEEEKERHAREYPDYKY 71
>gnl|CDD|116877 pfam08293, MRP-S33, Mitochondrial ribosomal subunit S27. This
family of proteins corresponds to mitochondrial
ribosomal subunit S27 in prokaryotes and to subunit S33
in humans. It is a small 106 residue protein.The
evolutionary history of the mitoribosomal proteome that
is encoded by a diverse subset of eukaryotic genomes,
reveals an ancestral ribosome of alpha-proteobacterial
descent that more than doubled its protein content in
most eukaryotic lineages. Several new MRPs have
originated via duplication of existing MRPs as well as
by recruitment from outside of the mitoribosomal
proteome.
Length = 87
Score = 27.3 bits (61), Expect = 5.4
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 360 YRYFETRDESYIGKRVERMEVRGRKGRGRPKK 391
Y RDE + R+E + +R +G+G PKK
Sbjct: 57 YPDLLFRDE-HEDFRLEMLRLRKLRGKGAPKK 87
>gnl|CDD|219226 pfam06911, Senescence, Senescence-associated protein. This family
contains a number of plant senescence-associated
proteins of approximately 450 residues in length. In
Hemerocallis, petals have a genetically based program
that leads to senescence and cell death approximately 24
hours after the flower opens, and it is believed that
senescence proteins produced around that time have a
role in this program. This family extends to the higher
vertebrates where the full-length protein is often a
Spartin, associated with mitochondrial membranes and
transportation along microtubules.
Length = 181
Score = 28.4 bits (64), Expect = 5.9
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 281 KFTEYAVAVAARTVNGLGRLSGKVTVKV 308
K ++ V+ +NG+G+++G V +
Sbjct: 57 KLSKATAKVSKSVLNGVGKVAGNVGSSL 84
>gnl|CDD|221758 pfam12762, DDE_Tnp_IS1595, ISXO2-like transposase domain. This
domain probably functions as an integrase that is found
in a wide variety of transposases, including ISXO2.
Length = 151
Score = 28.0 bits (63), Expect = 6.7
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 367 DESYIG-KRVERMEVRGRKGRGRPKKRW 393
DE+Y+G +R + +G++GRG K
Sbjct: 9 DETYLGGRRNGKKRRKGKRGRGAEGKTP 36
>gnl|CDD|226606 COG4121, COG4121, Uncharacterized conserved protein [Function
unknown].
Length = 252
Score = 28.1 bits (63), Expect = 7.3
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 373 KRVERMEVRGRKGRGRPKKRWMDC 396
+R+E+ K GR KKR +
Sbjct: 215 RRLEQAGFTVEKRTGRGKKRELLR 238
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.132 0.394
Gapped
Lambda K H
0.267 0.0591 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 21,867,247
Number of extensions: 2098602
Number of successful extensions: 1759
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1753
Number of HSP's successfully gapped: 25
Length of query: 427
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 327
Effective length of database: 6,502,202
Effective search space: 2126220054
Effective search space used: 2126220054
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.2 bits)