RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8774
(427 letters)
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 168 bits (425), Expect = 7e-46
Identities = 50/384 (13%), Positives = 105/384 (27%), Gaps = 47/384 (12%)
Query: 9 TIELVWSQPTQT-YGEILGYRVKYGVREHTLKENLVNSKNMSFLITNLERGVEYEFRIAG 67
+ + + + G I+ V+Y + + S+ I +L+ EYE +
Sbjct: 277 YLWIQLNANSINGDGPIVAREVEYC-TASGSWNDRQPVDSTSYKIGHLDPDTEYEISVLL 335
Query: 68 QNHIGYGQ----ETVRYYTTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVL 123
G +R T P P + + I W+P
Sbjct: 336 TRPGEGGTGSPGPALRTRTKCADPM-RGPRKLEVVEVKSRQITIRWEPFGYNVTRCHSYN 394
Query: 124 YNVKFHKKIDANN------VIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKL 177
V + ++ + + +NL S ++ + G S +L
Sbjct: 395 LTVHYCYQVGGQEQVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRKE-SQEL 453
Query: 178 SLMTARDM-VRAPLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQ 236
+ T D+ P +T ++ + + W+ G I Y+I Y + D +
Sbjct: 454 IVQTDEDLPGAVPTESIQGSTFEEKIFLQWREPTQTYGVITLYEITYKAVSSFDPEIDLS 513
Query: 237 KSIPLTESSNIARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNG 296
+ L T Y+ + A T G
Sbjct: 514 NQ-----------------------SGRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKG 550
Query: 297 LGRLSGK--VTVKVKPEDVPLSLRAH-DVSTHSMTLSWSPPIKLNP------VKYKEVSE 347
G + T P L + + +++T+ P + +E
Sbjct: 551 FGPPATNQFTTKISAPSMPAYELETPLNQTDNTVTVMLKPAHSRGAPVSVYQIVVEEERP 610
Query: 348 KIQERRLQKYGQYRYFETRDESYI 371
+ ++ + Y + +
Sbjct: 611 RRTKKTTEILKCYPVPIHFQNASL 634
Score = 138 bits (349), Expect = 8e-36
Identities = 58/336 (17%), Positives = 93/336 (27%), Gaps = 33/336 (9%)
Query: 9 TIELVWSQPTQ--TYGEILGYRVKYGVR------EHTLKENLVNSKNMSFLITNLERGVE 60
I + W T V Y + + + ITNL
Sbjct: 375 QITIRWEPFGYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTITNLSPYTN 434
Query: 61 YEFRIAGQNHIGYGQETVRYYTTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQ 120
++ N G + T E P P + + + W P T G
Sbjct: 435 VSVKLILMNPEGRKESQELIVQTDEDLPGAVPTESIQGSTFEEKIFLQWREP--TQTYGV 492
Query: 121 IVLYNVKF---------HKKIDANNVIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPG 171
I LY + + + + + + +T +F L G YS ++A T G G
Sbjct: 493 ITLYEITYKAVSSFDPEIDLSNQSGRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFG 552
Query: 172 PWSPKLSLMTARDMVRAP--LGVKALATSDQSVEVWWKPVPAGRGKILGYQIFY----TM 225
P + T P L +D +V V KP + + YQI
Sbjct: 553 PPATN-QFTTKISAPSMPAYELETPLNQTDNTVTVMLKPAHSRGAPVSVYQIVVEEERPR 611
Query: 226 TAVEDLDEWSQKSIPLTESSNIARIFYTMTAVEDLDEWSQKSVPLTESAELTS------- 278
+ + +P+ + A E + Q + P T T
Sbjct: 612 RTKKTTEILKCYPVPIHFQNASLLNSQYYFAAEFPADSLQAAQPFTIGDNKTYNGYWNTP 671
Query: 279 LEKFTEYAVAVAARTVNGLGRLSGKVTVKVKPEDVP 314
L + Y + A + V V K P
Sbjct: 672 LLPYKSYRIYFQAASRANGETKIDCVQVATKGAATP 707
Score = 67.9 bits (165), Expect = 2e-12
Identities = 37/284 (13%), Positives = 73/284 (25%), Gaps = 47/284 (16%)
Query: 61 YEFRIAGQNHIGY---GQETVRYYTTPEGPPTGPPANIS-HHFQTPDVVCITWDPPLRTH 116
F + H GY + V + P N+ + Q C +
Sbjct: 137 VIFEVITSGHQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGD 196
Query: 117 RNGQIVLYNVKFHKKIDANNVIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPK 176
R + + V N + T+ G G +
Sbjct: 197 RL--WLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYA 254
Query: 177 LSLMTARDMVRAPLGVKALATSDQSVEVWWKPVPA-GRGKILGYQIFYTMTAVEDLDEWS 235
++ + AP + + + + G G I+ ++ Y +
Sbjct: 255 ELVVKEPPVPIAPPQLAS--VGATYLWIQLNANSINGDGPIVAREVEYCTAS-------- 304
Query: 236 QKSIPLTESSNIARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVN 295
W+ + + S ++ L+ TEY ++V
Sbjct: 305 -------------------------GSWNDRQPVDSTSYKIGHLDPDTEYEISVLLTRPG 339
Query: 296 GLGR--LSGKVTVKVKPEDV---PLSLRAHDVSTHSMTLSWSPP 334
G + + K D P L +V + +T+ W P
Sbjct: 340 EGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSRQITIRWEPF 383
Score = 32.8 bits (74), Expect = 0.21
Identities = 14/145 (9%), Positives = 25/145 (17%), Gaps = 48/145 (33%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYGVREHTLKENLV------------------------- 43
T+ ++ + Y++ +
Sbjct: 583 TVTVMLKPAHSRGAPVSVYQIVVEEERPRRTKKTTEILKCYPVPIHFQNASLLNSQYYFA 642
Query: 44 ------------------NSKNMSFLITNLERGVEYEFRIAGQNHIGYGQ--ETVRYYTT 83
N + T L Y + + V+ T
Sbjct: 643 AEFPADSLQAAQPFTIGDNKTYNGYWNTPLLPYKSYRIYFQAASRANGETKIDCVQVATK 702
Query: 84 PEGPPTGPPANISHHFQTPDVVCIT 108
P P QT V T
Sbjct: 703 GAATPKPVPEPEK---QTDHTVKGT 724
>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein;
2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A
Length = 368
Score = 156 bits (396), Expect = 5e-44
Identities = 62/329 (18%), Positives = 107/329 (32%), Gaps = 50/329 (15%)
Query: 9 TIELVWSQPTQTYGEILGYRVKY---GVREHTLKENLVNSKNMSFLITNLERGVEYEFRI 65
+ + W + T +I GYR+ ++ E +V++ S NL G+EY +
Sbjct: 18 VLTVSWERSTT--PDITGYRITTTPTNGQQGNSLEEVVHADQSSCTFDNLSPGLEYNVSV 75
Query: 66 AGQNHIGYGQETVRYYTTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYN 125
T P PP ++ PD + +TW PP +V Y+
Sbjct: 76 YTVKDDKESVPIS--DTIIPAVP--PPTDLRFTNIGPDTMRVTWAPPPSIDLTNFLVRYS 131
Query: 126 VKFHKKIDANNVIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTARDM 185
K + + + + V +NL G EY V ++ + +
Sbjct: 132 P--VKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLR----GRQKTG 185
Query: 186 VRAPLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESS 245
+ +P G+ + S V W I GY+I + + +P + +
Sbjct: 186 LDSPTGIDFSDITANSFTVHWIAPR---ATITGYRIRH--HPEHFSGRPREDRVPHSRN- 239
Query: 246 NIARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLSGKVT 305
S LT+L TEY V++ A L +
Sbjct: 240 ---------------------------SITLTNLTPGTEYVVSIVALNGREESPLL--IG 270
Query: 306 VKVKPEDVPLSLRAHDVSTHSMTLSWSPP 334
+ DVP L + S+ +SW P
Sbjct: 271 QQSTVSDVPRDLEVVAATPTSLLISWDAP 299
Score = 131 bits (332), Expect = 8e-35
Identities = 48/306 (15%), Positives = 95/306 (31%), Gaps = 53/306 (17%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYGV--REHTLKENLVNSKNMSFLITNLERGVEYEFRIA 66
T+ + W+ P ++ + V+Y E + E ++ + + ++TNL G EY ++
Sbjct: 110 TMRVTWAPPPS--IDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVS 167
Query: 67 GQNHIGYGQETVRYYTTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNV 126
T PT I T + + W P I Y +
Sbjct: 168 SVYEQHESTPLRGRQKTGLDSPT----GIDFSDITANSFTVHWIAP-----RATITGYRI 218
Query: 127 KFHKK--IDANNVIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTARD 184
+ H + ++ +NL G EY + A+ P
Sbjct: 219 RHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLLIG----QQST 274
Query: 185 MVRAPLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTES 244
+ P ++ +A + S+ + W + Y+I Y + Q+
Sbjct: 275 VSDVPRDLEVVAATPTSLLISWDAPA---VTVRYYRITYG---ETGGNSPVQEFTVPGSK 328
Query: 245 SNIARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLSGK- 303
S +A ++ L+ +Y + V A T G S K
Sbjct: 329 S---------------------------TATISGLKPGVDYTITVYAVTGRGDSPASSKP 361
Query: 304 VTVKVK 309
+++ +
Sbjct: 362 ISINYR 367
Score = 109 bits (273), Expect = 1e-26
Identities = 43/251 (17%), Positives = 82/251 (32%), Gaps = 46/251 (18%)
Query: 88 PTGPPANIS-HHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANNVIHR---NTT 143
P PP N+ V+ ++W+ I Y + +
Sbjct: 1 PLSPPTNLHLEANPDTGVLTVSWERS----TTPDITGYRITTTPTNGQQGNSLEEVVHAD 56
Query: 144 QTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTARDMVRAPLGVKALATSDQSVE 203
Q+ F NL G+EY+ V + T V P ++ ++
Sbjct: 57 QSSCTFDNLSPGLEYNVSVYTVKDDKESVPIS----DTIIPAVPPPTDLRFTNIGPDTMR 112
Query: 204 VWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNIARIFYTMTAVEDLDEW 263
V W P P+ + + + Y+ E ++ ++ SI +++
Sbjct: 113 VTWAPPPS--IDLTNFLVRYSPVKNE--EDVAELSISPSDN------------------- 149
Query: 264 SQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLSGKVTVKVKPEDVPLSLRAHDVS 323
+ LT+L TEY V+V++ V + + D P + D++
Sbjct: 150 ---------AVVLTNLLPGTEYVVSVSS--VYEQHESTPLRGRQKTGLDSPTGIDFSDIT 198
Query: 324 THSMTLSWSPP 334
+S T+ W P
Sbjct: 199 ANSFTVHWIAP 209
Score = 29.4 bits (66), Expect = 2.1
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 310 PEDVPLSLRAHDVS-THSMTLSWSPPIKLNPVKYK 343
P P +L T +T+SW + Y+
Sbjct: 1 PLSPPTNLHLEANPDTGVLTVSWERSTTPDITGYR 35
>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III
domain, oncofetal splice VARI extra-domain B, EIIIB,
ED-B, angiogenesis, integrin; 2.40A {Homo sapiens}
Length = 375
Score = 153 bits (389), Expect = 7e-43
Identities = 55/331 (16%), Positives = 105/331 (31%), Gaps = 53/331 (16%)
Query: 9 TIELVWSQPTQTYGEILGYRVKY---GVREHTLKENLVNSKNMSFLITNLERGVEYEFRI 65
+ + W + T +I GYR+ ++ E +V++ S NL G+EY +
Sbjct: 19 VLTVSWERSTT--PDITGYRITTTPTNGQQGNSLEEVVHADQSSCTFDNLSPGLEYNVSV 76
Query: 66 AGQNHIGYGQETVRYYTTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYN 125
T P ++S T + + W P + I+ Y
Sbjct: 77 YTVKDDKESVPI--SDTIIPEVP--QLTDLSFVDITDSSIGLRWTPL----NSSTIIGYR 128
Query: 126 VKFHKKIDANNVIHR--NTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTAR 183
+ + + +++ + LE GI+Y V + G + T +
Sbjct: 129 ITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVITLINGGESAPTTL----TQQ 184
Query: 184 DMVRAPLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTE 243
V P ++ ++ V W P P+ + + + Y+ E+ S
Sbjct: 185 TAVPPPTDLRFTNIGPDTMRVTWAPPPS--IDLTNFLVRYSPVKNEEDVAELSISPSDN- 241
Query: 244 SSNIARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLSGK 303
+ LT+L TEY V+V++ +
Sbjct: 242 -----------------------------AVVLTNLLPGTEYVVSVSSVYEQHESTPL-R 271
Query: 304 VTVKVKPEDVPLSLRAHDVSTHSMTLSWSPP 334
K D P + D++ +S T+ W P
Sbjct: 272 GRQKTGL-DSPTGIDFSDITANSFTVHWIAP 301
Score = 128 bits (323), Expect = 2e-33
Identities = 61/298 (20%), Positives = 104/298 (34%), Gaps = 53/298 (17%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYGVREHT--LKENLVNSKNMSFLITNLERGVEYEFRIA 66
+I L W+ I+GYR+ + E+ V+S + +T LE G++Y+ +
Sbjct: 111 SIGLRWTPLNS--STIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVI 168
Query: 67 GQNHIGYGQETVRYYTTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNV 126
+ G T T PPT ++ PD + +TW PP + + + V
Sbjct: 169 TLINGGESAPTTLTQQTAVPPPT----DLRFTNIGPDTMRVTWAPP----PSIDLTNFLV 220
Query: 127 KFHKKIDANNVIHRN--TTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTARD 184
++ + +V + + V +NL G EY V ++ + + T D
Sbjct: 221 RYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPL-RGRQKTGLD 279
Query: 185 MVRAPLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTES 244
+P G+ + S V W R I GY+I + E +
Sbjct: 280 ---SPTGIDFSDITANSFTVHWIAP---RATITGYRIRHH---PEHFSGRPR-------- 322
Query: 245 SNIARIFYTMTAVEDLDEWSQKSVPLTE-SAELTSLEKFTEYAVAVAARTVNGLGRLS 301
+ VP + S LT+L TEY V++ A L
Sbjct: 323 --------------------EDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLL 360
Score = 109 bits (273), Expect = 1e-26
Identities = 41/252 (16%), Positives = 76/252 (30%), Gaps = 48/252 (19%)
Query: 88 PTGPPANIS-HHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANN---VIHRNTT 143
P PP N+ V+ ++W+ I Y + +
Sbjct: 2 PLSPPTNLHLEANPDTGVLTVSWERS----TTPDITGYRITTTPTNGQQGNSLEEVVHAD 57
Query: 144 QTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTARDMVRAPLGVKALATSDQSVE 203
Q+ F NL G+EY+ V + T V + + +D S+
Sbjct: 58 QSSCTFDNLSPGLEYNVSVYTVKDDKESVP----ISDTIIPEVPQLTDLSFVDITDSSIG 113
Query: 204 VWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNIARIFYTMTAVEDLDEW 263
+ W P+ + I+GY+I A +
Sbjct: 114 LRWTPLNSST--IIGYRITV-------------------------------VAAGEGIPI 140
Query: 264 SQKSVPLTE-SAELTSLEKFTEYAVAVAARTVNGLGRLSGKVTVKVKPEDVPLSLRAHDV 322
+ V + +T LE +Y ++V G + + P LR ++
Sbjct: 141 FEDFVDSSVGYYTVTGLEPGIDYDISVITLINGGESAPT--TLTQQTAVPPPTDLRFTNI 198
Query: 323 STHSMTLSWSPP 334
+M ++W+PP
Sbjct: 199 GPDTMRVTWAPP 210
Score = 61.4 bits (149), Expect = 2e-10
Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 5/83 (6%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYGVREHT--LKENLVNSKNMSFLITNLERGVEYEFRIA 66
+ + W P I GYR+++ + +E+ V S +TNL G EY I
Sbjct: 293 SFTVHWIAPR---ATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIV 349
Query: 67 GQNHIGYGQETVRYYTTPEGPPT 89
N + +T
Sbjct: 350 ALNGREESPLLIGQQSTVSAHHH 372
Score = 28.6 bits (64), Expect = 3.9
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 310 PEDVPLSLRAHDV-STHSMTLSWSPPIKLNPVKYK 343
P P +L T +T+SW + Y+
Sbjct: 2 PLSPPTNLHLEANPDTGVLTVSWERSTTPDITGYR 36
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 144 bits (365), Expect = 4e-38
Identities = 57/342 (16%), Positives = 100/342 (29%), Gaps = 54/342 (15%)
Query: 9 TIELVWSQPTQTYGEILGYRVKY----GVREHTLKENLVNSKNMSFLITNLERGVEYEFR 64
++L W+ P+ IL Y ++Y + S SF + +L+ EY FR
Sbjct: 216 ILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFR 275
Query: 65 IAGQNHIGYGQET----VRYYTTPEGPPTGPPANI----SHHFQTPDVVCITWDPPLRTH 116
I G G + T E P+ P+ H Q V + W
Sbjct: 276 IRCMKEDGKGYWSDWSEEASGITYEDRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFE 335
Query: 117 RNGQIVLYNVKFHKKIDANNVIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPK 176
NG+I+ Y V + N T+ + Y A + G +
Sbjct: 336 ANGKILDYEVTLTRWKSHLQNYTVNATK----LTVNLTNDRYLATLTVRNLVGKSDAAV- 390
Query: 177 LSLMTARDMVRAPLGVKALATSDQSVEV-WWKPVPAGRGKILGYQIFYTMTAVEDLDEWS 235
L++ P+ D + V W P + + IL + +
Sbjct: 391 LTIPACDFQATHPVMDLKAFPKDNMLWVEWTTPRESVKKYILEWCVLS----------DK 440
Query: 236 QKSIPLTESSNIARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVN 295
I +W Q+ + + +L + Y + V +
Sbjct: 441 APCIT---------------------DWQQEDGTVHRTYLRGNLAESKCYLITVTPVYAD 479
Query: 296 GLGRLSGKVTVKVKPEDVPL---SLRAHDVSTHSMTLSWSPP 334
G G + + + P ++R V + L W
Sbjct: 480 GPGSPE-SIKAYL-KQAPPSKGPTVRTKKVGKNEAVLEWDQL 519
Score = 123 bits (310), Expect = 8e-31
Identities = 49/345 (14%), Positives = 106/345 (30%), Gaps = 58/345 (16%)
Query: 9 TIELVWSQPTQTYGEILGYRVKY--GVREHTLKENLVNSKNMSFLITNLERGVEYEFRIA 66
+ W +T+ E + +K + + ++ + + V E +
Sbjct: 118 KMRCEWDGGRETHLET-NFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVE 176
Query: 67 GQNHIGYGQETVRYYTTPEGPPTGPPANISHHF--QTPDVVCITWDPPLRTHRNGQIVLY 124
+N +G + PP N+S + ++ +TW P + ++ I+ Y
Sbjct: 177 AENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNP--SIKSVIILKY 234
Query: 125 NVKFHKKIDAN----NVIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLM 180
N+++ K + +T++ +L+ EY ++ + + G G WS
Sbjct: 235 NIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEA 294
Query: 181 TARDMVRAPLG--------VKALATSDQSVEVWWKPVPA--GRGKILGYQIFYTMTAVED 230
+ P + ++V++ WK +P GKIL Y++ T
Sbjct: 295 SGITYEDRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLT------ 348
Query: 231 LDEWSQKSIPLTESSNIARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVA 290
W +V T +LT Y +
Sbjct: 349 --RWKS-------------------------HLQNYTVNAT---KLTVNLTNDRYLATLT 378
Query: 291 ARTVNGLGRLSG-KVTVKVKPEDVPLSLRAHDVSTHSMTLSWSPP 334
R + G + + P+ + + + W+ P
Sbjct: 379 VRNLVGKSDAAVLTIPACDFQATHPVMDLKAFPKDNMLWVEWTTP 423
Score = 123 bits (309), Expect = 1e-30
Identities = 30/177 (16%), Positives = 61/177 (34%), Gaps = 4/177 (2%)
Query: 9 TIELVWSQPTQTY-GEILGYRVKYGVREHTLKENLVN-SKNMSFLITNLERGVEYEFRIA 66
+ + W+ P ++ IL + V + + + ++L NL Y +
Sbjct: 415 MLWVEWTTPRESVKKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAESKCYLITVT 474
Query: 67 GQNHIGYGQETVRYYTTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNV 126
G G + PP+ P + + + WD +NG I Y +
Sbjct: 475 PVYADGPGSPESIKAYLKQAPPSKGP-TVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTI 533
Query: 127 KFHKKIDANNVIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTAR 183
+ I ++ +++ T+ S+L Y + A T G P+ + T +
Sbjct: 534 FYRTIIGNETAVNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEGGKD-GPEFTFTTPK 589
Score = 122 bits (306), Expect = 3e-30
Identities = 55/295 (18%), Positives = 90/295 (30%), Gaps = 44/295 (14%)
Query: 9 TIELVWSQ--PTQTYGEILGYRVKYGVREHTLKENLVNSKNMSFLITNLERGVEYEFRIA 66
T++LVW P + G+IL Y V + L+ VN+ ++ +TN Y +
Sbjct: 323 TVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQNYTVNATKLTVNLTN----DRYLATLT 378
Query: 67 GQNHIGYGQETVRYYTTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNV 126
+N +G V + T P ++ +++ + W P + + I+ + V
Sbjct: 379 VRNLVGKSDAAVLTIPACDFQATHPVMDLKAFP-KDNMLWVEWTTPRESVK-KYILEWCV 436
Query: 127 KFHKKIDANN-VIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTARDM 185
K + T + NL E Y V + GPG +
Sbjct: 437 LSDKAPCITDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSPESI-KAYLKQAP 495
Query: 186 VRAPLGVKALATSDQSVEVWWKPVPA--GRGKILGYQIFYTMTAVEDLDEWSQKSIPLTE 243
V+ + W +P G I Y IFY
Sbjct: 496 PSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYR------------------- 536
Query: 244 SSNIARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLG 298
+E + L+SL T Y V +AA T G
Sbjct: 537 -------------TIIGNETAVNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEGGK 578
Score = 97.0 bits (241), Expect = 8e-22
Identities = 52/343 (15%), Positives = 93/343 (27%), Gaps = 48/343 (13%)
Query: 8 VTIELVWSQPTQTYGEILGYRVKY---GVREHTLKENLVNSKNMSFLITNLERG-VEYEF 63
T V + Y + + + + ++N S T++ ++
Sbjct: 21 FTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTDIASLNIQLTC 80
Query: 64 RIAGQNHIGYGQETVRYYTTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVL 123
I + + V T G P P N+S + WD TH L
Sbjct: 81 NILTFGQLE---QNVYGITIISGLPPEKPKNLSCIVNEGKKMRCEWDGGRETHLETNFTL 137
Query: 124 YNVKFHKKIDANNVIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTAR 183
++ A+ R+T + V + + V+A G +
Sbjct: 138 K-SEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYK 196
Query: 184 DMVRAPLGVKALATSDQSVEVW--WKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPL 241
P + + + + S + W IL Y I Y +D WSQ
Sbjct: 197 VKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRT---KDASTWSQIPPED 253
Query: 242 TESSNIARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLS 301
T S+ S + L+ FTEY + +G G S
Sbjct: 254 TAST-------------------------RSSFTVQDLKPFTEYVFRIRCMKEDGKGYWS 288
Query: 302 ---GKVTVKVKPE-------DVPLSLRAHDVSTHSMTLSWSPP 334
+ + + +H ++ L W
Sbjct: 289 DWSEEASGITYEDRPSKAPSFWYKIDPSHTQGYRTVQLVWKTL 331
>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin
type III domain, alternative cell membrane, disulfide
bond; 1.90A {Homo sapiens} PDB: 3l5j_A
Length = 290
Score = 136 bits (344), Expect = 2e-37
Identities = 56/295 (18%), Positives = 91/295 (30%), Gaps = 44/295 (14%)
Query: 9 TIELVWS--QPTQTYGEILGYRVKYGVREHTLKENLVNSKNMSFLITNLERGVEYEFRIA 66
T++LVW P + G+IL Y V + L+ VN+ ++ +TN Y +
Sbjct: 24 TVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQNYTVNATKLTVNLTNDR----YLATLT 79
Query: 67 GQNHIGYGQETVRYYTTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNV 126
+N +G V + T P ++ F +++ + W P + I+ + V
Sbjct: 80 VRNLVGKSDAAVLTIPACDFQATHPVMDL-KAFPKDNMLWVEWTTPRESV-KKYILEWCV 137
Query: 127 KFHKKIDANNVIHRNTTQTKAVF-SNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTARDM 185
K + + T + NL E Y V + GPG +
Sbjct: 138 LSDKAPCITDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSPESI-KAYLKQAP 196
Query: 186 VRAPLGVKALATSDQSVEVWWKPVPA--GRGKILGYQIFYTMTAVEDLDEWSQKSIPLTE 243
V+ + W +P G I Y IFY +
Sbjct: 197 PSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYR--------TIIGNETAVNV 248
Query: 244 SSNIARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLG 298
S+ L+SL T Y V +AA T G
Sbjct: 249 DSS------------------------HTEYTLSSLTSDTLYMVRMAAYTDEGGK 279
Score = 123 bits (311), Expect = 1e-32
Identities = 29/178 (16%), Positives = 60/178 (33%), Gaps = 10/178 (5%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYGVREHTL-----KENLVNSKNMSFLITNLERGVEYEF 63
+ + W+ P + Y +++ V + + + ++L NL Y
Sbjct: 116 MLWVEWTTPR---ESVKKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAESKCYLI 172
Query: 64 RIAGQNHIGYGQETVRYYTTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVL 123
+ G G + PP+ P + + + WD +NG I
Sbjct: 173 TVTPVYADGPGSPESIKAYLKQAPPSKGP-TVRTKKVGKNEAVLEWDQLPVDVQNGFIRN 231
Query: 124 YNVKFHKKIDANNVIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMT 181
Y + + I ++ +++ T+ S+L Y + A T G P+ + T
Sbjct: 232 YTIFYRTIIGNETAVNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEGGKD-GPEFTFTT 288
Score = 110 bits (276), Expect = 1e-27
Identities = 34/254 (13%), Positives = 68/254 (26%), Gaps = 40/254 (15%)
Query: 84 PEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANNVIHRNTT 143
P P+ H Q V + W NG+I+ Y V + N T
Sbjct: 4 PSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQNYTVNAT 63
Query: 144 QTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTARDMVRAPLGVKALATSDQSVE 203
+ +N Y A + G + + +KA + +
Sbjct: 64 KLTVNLTND----RYLATLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKAFPKDN-MLW 118
Query: 204 VWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNIARIFYTMTAVEDLDEW 263
V W + Y + + + + + + +W
Sbjct: 119 VEWTTPR---ESVKKYILEWCVLSDKA---------------------------PCITDW 148
Query: 264 SQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLSGKVTVKVKPEDVPL---SLRAH 320
Q+ + + +L + Y + V +G G + + + P ++R
Sbjct: 149 QQEDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSPE-SIKAYL-KQAPPSKGPTVRTK 206
Query: 321 DVSTHSMTLSWSPP 334
V + L W
Sbjct: 207 KVGKNEAVLEWDQL 220
Score = 56.7 bits (137), Expect = 3e-09
Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 2/79 (2%)
Query: 9 TIELVWSQP--TQTYGEILGYRVKYGVREHTLKENLVNSKNMSFLITNLERGVEYEFRIA 66
L W Q G I Y + Y V+S + + +++L Y R+A
Sbjct: 212 EAVLEWDQLPVDVQNGFIRNYTIFYRTIIGNETAVNVDSSHTEYTLSSLTSDTLYMVRMA 271
Query: 67 GQNHIGYGQETVRYYTTPE 85
G +TTP+
Sbjct: 272 AYTDEGGKDGPEFTFTTPK 290
>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma,
epidermolysis bullosa, alternative splicing, disease
mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo
sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A
Length = 234
Score = 131 bits (331), Expect = 5e-36
Identities = 43/261 (16%), Positives = 82/261 (31%), Gaps = 40/261 (15%)
Query: 85 EGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANNVIHR-NTT 143
G P N + + W PP +G+ + Y VK+ + D+ + H ++
Sbjct: 2 SHMDLGAPQNPNAKAAGSRKIHFNWLPP-----SGKPMGYRVKYWIQGDSESEAHLLDSK 56
Query: 144 QTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTARDMVRAPLGVKALATSDQSVE 203
+NL +Y +V A G GP+S +S T +++ P + S +
Sbjct: 57 VPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSEPGRLAFNVVSSTVTQ 116
Query: 204 VWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNIARIFYTMTAVEDLDEW 263
+ W G+I Y++ Y + ++ K + +
Sbjct: 117 LSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPK------------------ 158
Query: 264 SQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLSGKVTVKVKPEDVPLS------L 317
+ +L + Y V AR G G + P+S +
Sbjct: 159 -------NRMLLIENLRESQPYRYTVKARNGAGWGPEREAIINLATQPKRPMSIPIIPDI 211
Query: 318 RAHDVSTHSMTLS---WSPPI 335
D + S +S +
Sbjct: 212 PIVDAQSGEDYDSFLMYSDDV 232
Score = 119 bits (301), Expect = 9e-32
Identities = 51/218 (23%), Positives = 85/218 (38%), Gaps = 23/218 (10%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYGVREHT-LKENLVNSKNMSFLITNLERGVEYEFRIAG 67
I W P+ G+ +GYRVKY ++ + + +L++SK S +TNL +YE ++
Sbjct: 21 KIHFNWLPPS---GKPMGYRVKYWIQGDSESEAHLLDSKVPSVELTNLYPYCDYEMKVCA 77
Query: 68 QNHIGYGQET-VRYYTTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNV 126
G G + + T + P P ++ + + V ++W P NG+I Y V
Sbjct: 78 YGAQGEGPYSSLVSCRTHQEVP-SEPGRLAFNVVSSTVTQLSWAEPA--ETNGEITAYEV 134
Query: 127 KFHKKIDANN-------VIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSL 179
+ D N V+ N + NL E Y V+A AG GP +
Sbjct: 135 CYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYTVKARNGAGWGPEREAIIN 194
Query: 180 MTARDMV--RAPLGVKALATSDQSVE------VWWKPV 209
+ + P+ QS E ++ V
Sbjct: 195 LATQPKRPMSIPIIPDIPIVDAQSGEDYDSFLMYSDDV 232
Score = 82.9 bits (205), Expect = 2e-18
Identities = 39/171 (22%), Positives = 59/171 (34%), Gaps = 46/171 (26%)
Query: 188 APLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNI 247
AP A A + + W P GK +GY++ Y W Q
Sbjct: 8 APQNPNAKAAGSRKIHFNWLPPS---GKPMGYRVKY----------WIQGD--------- 45
Query: 248 ARIFYTMTAVEDLDEWSQKSVPLTE-SAELTSLEKFTEYAVAVAARTVNGLGRLSGKVTV 306
E + S ELT+L + +Y + V A G G S V+
Sbjct: 46 -------------SESEAHLLDSKVPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSC 92
Query: 307 KVKPEDVP---LSLRAHDVSTHSMTLSWSPPIKLN------PVKYKEVSEK 348
+ ++VP L + VS+ LSW+ P + N V Y V++
Sbjct: 93 RT-HQEVPSEPGRLAFNVVSSTVTQLSWAEPAETNGEITAYEVCYGLVNDD 142
Score = 75.6 bits (186), Expect = 8e-16
Identities = 30/121 (24%), Positives = 44/121 (36%), Gaps = 15/121 (12%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYGVREHT-------LKENLVNSKNMSFLITNLERGVEY 61
+L W++P +T GEI Y V YG+ K + N KN LI NL Y
Sbjct: 114 VTQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPY 173
Query: 62 EFRIAGQNHIGYGQ--ETVRYYTTPEGPPTGPPA-----NISHHFQTPDVVCITW-DPPL 113
+ + +N G+G E + T P P + + + D L
Sbjct: 174 RYTVKARNGAGWGPEREAIINLATQPKRPMSIPIIPDIPIVDAQSGEDYDSFLMYSDDVL 233
Query: 114 R 114
R
Sbjct: 234 R 234
>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins,
protein-protein interactions, C-type lectin domain;
2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
Length = 283
Score = 129 bits (327), Expect = 7e-35
Identities = 49/296 (16%), Positives = 87/296 (29%), Gaps = 57/296 (19%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYGV--REHTLKENLVNSKNMSFLITNLERGVEYEFRIA 66
+ W+ P ++ +KYG+ E + + + L G YE I+
Sbjct: 30 VAFVEWTPPR---AKVDFILLKYGLVGGEGGKTTFRLQPPLSQYSVQALRPGSRYEVSIS 86
Query: 67 GQNHIGYGQETVRYYTTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNV 126
+ +TT P N+ +T + + WD + Y V
Sbjct: 87 AVRGTNESDASSTQFTTEIDAPK----NLRVGSRTATSLDLEWDNS-----EAEAQEYKV 137
Query: 127 KF----HKKIDANNVIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTA 182
+ ++ V TK ++L G EY + A+ + + M A
Sbjct: 138 VYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQSIPAT----MNA 193
Query: 183 RDMVRAPLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLT 242
R + +P + A+S+ S+ + W G I Y+I +T
Sbjct: 194 RTELDSPRDLMVTASSETSISLIWTKAS---GPIDHYRITFT------------------ 232
Query: 243 ESSNIARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLG 298
S LT LE EY +++ A
Sbjct: 233 --------------PSSGISSEVTVPRDRTSYTLTDLEPGAEYIISITAERGRQQS 274
Score = 109 bits (274), Expect = 2e-27
Identities = 41/256 (16%), Positives = 72/256 (28%), Gaps = 46/256 (17%)
Query: 82 TTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANN--VIH 139
P P I + V + W PP ++ +K+
Sbjct: 8 GGGGIPVIDGPTQILVRDVSDTVAFVEWTPP-----RAKVDFILLKYGLVGGEGGKTTFR 62
Query: 140 RNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTARDMVRAPLGVKALATSD 199
++ L G Y + A+ S + AP ++ + +
Sbjct: 63 LQPPLSQYSVQALRPGSRYEVSISAVRGTNESDASST----QFTTEIDAPKNLRVGSRTA 118
Query: 200 QSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNIARIFYTMTAVED 259
S+++ W + Y++ Y+ A E E
Sbjct: 119 TSLDLEWDNSE---AEAQEYKVVYSTLAGEQYHE-------------------------- 149
Query: 260 LDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLSGKVTVKVK-PEDVPLSLR 318
K + T LT L TEY V ++A + S T+ + D P L
Sbjct: 150 --VLVPKGIGPTTKTTLTDLVPGTEYGVGISAVMNSK---QSIPATMNARTELDSPRDLM 204
Query: 319 AHDVSTHSMTLSWSPP 334
S S++L W+
Sbjct: 205 VTASSETSISLIWTKA 220
Score = 90.3 bits (224), Expect = 1e-20
Identities = 30/171 (17%), Positives = 55/171 (32%), Gaps = 18/171 (10%)
Query: 9 TIELVWSQPTQTYGEILGYRVKY----GVREHTLKENLVNSKNMSFLITNLERGVEYEFR 64
+++L W E Y+V Y G + H + +T+L G EY
Sbjct: 120 SLDLEWDNSE---AEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVG 176
Query: 65 IAGQNHIGYGQ-ETVRYYTTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVL 123
I+ + T+ T P ++ + + + W +G I
Sbjct: 177 ISAVMNSKQSIPATMNARTEL-----DSPRDLMVTASSETSISLIWTKA-----SGPIDH 226
Query: 124 YNVKFHKKIDANNVIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWS 174
Y + F ++ + +T ++LE G EY + A S
Sbjct: 227 YRITFTPSSGISSEVTVPRDRTSYTLTDLEPGAEYIISITAERGRQQSLES 277
Score = 55.2 bits (133), Expect = 8e-09
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYGVREHTLKENLVNSKNMSFLITNLERGVEYEFRIAGQ 68
+I L+W++ + G I YR+ + E V S+ +T+LE G EY I +
Sbjct: 212 SISLIWTKAS---GPIDHYRITFTPSSGISSEVTVPRDRTSYTLTDLEPGAEYIISITAE 268
Query: 69 NHIGYGQETVRYYTT 83
E+ T
Sbjct: 269 RGRQQSLESTVDAFT 283
>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A
{Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
Length = 205
Score = 126 bits (318), Expect = 2e-34
Identities = 35/176 (19%), Positives = 56/176 (31%), Gaps = 8/176 (4%)
Query: 9 TIELVWSQPTQTYGEILGYRVKY---GVREHTLKENLVNSKNMSFLITNLERGVEYEFRI 65
E+ W Q IL Y +++ S + + Y FR+
Sbjct: 20 KAEIHWEQQGDNRSPILHYTIQFNTSFTPASWDAAYEKVPNTDSSFVVQMSPWANYTFRV 79
Query: 66 AGQNHIGYGQ--ETVRYYTTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVL 123
N IG TT P P N+ P+ + I+W P N
Sbjct: 80 IAFNKIGASPPSAHSDSCTTQPDVPFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFH 139
Query: 124 YNVKFHKKIDAN---NVIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPK 176
Y V + + I A N + Q V ++ ++Y +V AI G + +
Sbjct: 140 YYVSWKRDIPAAAWENNNIFDWRQNNIVIADQPTFVKYLIKVVAINDRGESNVAAE 195
Score = 84.4 bits (209), Expect = 4e-19
Identities = 35/234 (14%), Positives = 61/234 (26%), Gaps = 43/234 (18%)
Query: 86 GPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANN---VIHRNT 142
P D I W+ I+ Y ++F+ + +
Sbjct: 7 NAPKLTGITC-----QADKAEIHWEQQ--GDNRSPILHYTIQFNTSFTPASWDAAYEKVP 59
Query: 143 TQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTARDMV--RAPLGVKALATSDQ 200
+ + Y+ V A K G P S T + V + P V T
Sbjct: 60 NTDSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDNVVGQGTEPN 119
Query: 201 SVEVWWKPVPA--GRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNIARIFYTMTAVE 258
++ + W P+P Y + + W +I +NI
Sbjct: 120 NLVISWTPMPEIEHNAPNFHYYVSWKRDIPA--AAWENNNIFDWRQNNI----------- 166
Query: 259 DLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLSGKVTVKVKPED 312
+ F +Y + V A G ++ + V ED
Sbjct: 167 ----------------VIADQPTFVKYLIKVVAINDRGESNVAAEEVVGYSGED 204
Score = 56.6 bits (137), Expect = 1e-09
Identities = 27/151 (17%), Positives = 45/151 (29%), Gaps = 34/151 (22%)
Query: 188 APLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNI 247
AP +D E+ W+ R IL Y I + T+ W
Sbjct: 8 APKLTGITCQAD-KAEIHWEQQGDNRSPILHYTIQF-NTSFTP-ASWDA----------- 53
Query: 248 ARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLSGKVTVK 307
+ + VP T+S+ + + + Y V A G S
Sbjct: 54 ----------------AYEKVPNTDSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSC 97
Query: 308 VKPEDVPLS----LRAHDVSTHSMTLSWSPP 334
DVP + +++ +SW+P
Sbjct: 98 TTQPDVPFKNPDNVVGQGTEPNNLVISWTPM 128
>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A
{Homo sapiens} PDB: 1fnh_A
Length = 290
Score = 128 bits (324), Expect = 2e-34
Identities = 57/302 (18%), Positives = 93/302 (30%), Gaps = 53/302 (17%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYGV--REHTLKENLVNSKNMSFLITNLERGVEYEFRIA 66
++ W+ P ++ GYRV+ + +KE + + S +++ L +YE +
Sbjct: 36 SLSAQWTPPN---VQLTGYRVRVTPKEKTGPMKEINLAPDSSSVVVSGLMVATKYEVSVY 92
Query: 67 GQNHIGYGQETVRYYTTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNV 126
+ TT E PP T + I+W I + V
Sbjct: 93 ALKDTLTSRPAQGVVTTLENV--SPPRRARVTDATETTITISWRTK-----TETITGFQV 145
Query: 127 KFHKKIDANNVIHRN--TTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTARD 184
+ I R + L+ G +Y + + A
Sbjct: 146 DAVPA-NGQTPIQRTIKPDVRSYTITGLQPGTDYKIYLYTLNDNARSSPVVI----DAST 200
Query: 185 MVRAPLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTES 244
+ AP ++ LAT+ S+ V W+P R +I GY I Y
Sbjct: 201 AIDAPSNLRFLATTPNSLLVSWQPP---RARITGYIIKYE---KPGSPPR---------- 244
Query: 245 SNIARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGR-LSGK 303
E + P A +T LE TEY + V A N L G+
Sbjct: 245 -----------------EVVPRPRPGVTEATITGLEPGTEYTIYVIALKNNQKSEPLIGR 287
Query: 304 VT 305
Sbjct: 288 KK 289
Score = 117 bits (294), Expect = 4e-30
Identities = 47/265 (17%), Positives = 86/265 (32%), Gaps = 47/265 (17%)
Query: 73 YGQETVRYYTTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKI 132
+ + +GP P ++ TP + W PP N Q+ Y V+ K
Sbjct: 5 HHHHSSGLEVLFQGPAIPAPTDLKFTQVTPTSLSAQWTPP-----NVQLTGYRVRVTPKE 59
Query: 133 DANN--VIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTARDMVRAPL 190
I+ + V S L +Y V A+ + ++T + V P
Sbjct: 60 KTGPMKEINLAPDSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQ--GVVTTLENVSPPR 117
Query: 191 GVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNIARI 250
+ ++ ++ + W+ I G+Q+ + Q++I
Sbjct: 118 RARVTDATETTITISWRTKT---ETITGFQVDAVPA---NGQTPIQRTIK---------- 161
Query: 251 FYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLSGKVTVKVK- 309
P S +T L+ T+Y + + N S V +
Sbjct: 162 ------------------PDVRSYTITGLQPGTDYKIYLYTLNDNA---RSSPVVIDAST 200
Query: 310 PEDVPLSLRAHDVSTHSMTLSWSPP 334
D P +LR + +S+ +SW PP
Sbjct: 201 AIDAPSNLRFLATTPNSLLVSWQPP 225
Score = 77.9 bits (192), Expect = 3e-16
Identities = 28/182 (15%), Positives = 55/182 (30%), Gaps = 48/182 (26%)
Query: 153 EEGIEYSAEVQAITKAGPGPWSPKLSLMTARDMVRAPLGVKALATSDQSVEVWWKPVPAG 212
+S+ ++ + + P AP +K + S+ W P
Sbjct: 3 HHHHHHSSGLEVLFQGPAIP---------------APTDLKFTQVTPTSLSAQWTPPN-- 45
Query: 213 RGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNIARIFYTMTAVEDLDEWSQKSVPLTE 272
++ GY++ T E + ++ SS
Sbjct: 46 -VQLTGYRVRVTPK--EKTGPMKEINLAPDSSS--------------------------- 75
Query: 273 SAELTSLEKFTEYAVAVAARTVNGLGRLSGKVTVKVKPEDVPLSLRAHDVSTHSMTLSWS 332
++ L T+Y V+V A R + V ++ P R D + ++T+SW
Sbjct: 76 -VVVSGLMVATKYEVSVYALKDTLTSRPAQGVVTTLENVSPPRRARVTDATETTITISWR 134
Query: 333 PP 334
Sbjct: 135 TK 136
Score = 51.7 bits (124), Expect = 1e-07
Identities = 16/77 (20%), Positives = 25/77 (32%), Gaps = 5/77 (6%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYGVREHTLKE--NLVNSKNMSFLITNLERGVEYEFRIA 66
++ + W P I GY +KY +E IT LE G EY +
Sbjct: 217 SLLVSWQPPR---ARITGYIIKYEKPGSPPREVVPRPRPGVTEATITGLEPGTEYTIYVI 273
Query: 67 GQNHIGYGQETVRYYTT 83
+ + + T
Sbjct: 274 ALKNNQKSEPLIGRKKT 290
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 131 bits (331), Expect = 3e-33
Identities = 44/385 (11%), Positives = 105/385 (27%), Gaps = 79/385 (20%)
Query: 10 IELVWSQPTQT-YGEILGYRVKY-------------------------GVREHTLKENLV 43
I L W + ++LG+ + Y + +
Sbjct: 485 ILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPK 544
Query: 44 NSKNMSFLITNLERGVEYEFRIAGQNHIGYGQET------VRYYTTPEGPPTGPPANISH 97
+ + +L+ L+ +Y + + T + Y T P P +
Sbjct: 545 SQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNP-SVPLDPIS 603
Query: 98 HFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANNVIHRNTTQTKAVFSNLEEGIE 157
+ + + W PP + NG I Y V + ++ + + + + +
Sbjct: 604 VSNSSSQIILKWKPP--SDPNGNITHYLVFWERQAEDSELFELDYCLKGLKLPSRT---- 657
Query: 158 YSAEVQAITKAGPGPWSPKLSLMTARDMVRAPLGVKALATSDQSVEVWWKPVPAGRGKIL 217
+S ++ + S + + + S ++
Sbjct: 658 WSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILK-ELEESSFRKTFED--------- 707
Query: 218 GYQIFYTMTAVEDLDEWSQKSIPLTESSNIARIFYTMTAVEDLDEWSQKSVPLTE-SAEL 276
+ + + S R + + +E + + S +
Sbjct: 708 ----------------YLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESLVI 751
Query: 277 TSLEKFTEYAVAVAARTVNGLGRLSGK---VTVKVKPE----DVPLSLRAHDVSTHSMTL 329
+ L FT Y + + A + V+ + PE D+ + + + L
Sbjct: 752 SGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTHEIFENNVVHL 811
Query: 330 SWSPPIKLN------PVKYKEVSEK 348
W P + N V Y+ ++
Sbjct: 812 MWQEPKEPNGLIVLYEVSYRRYGDE 836
Score = 130 bits (326), Expect = 1e-32
Identities = 50/321 (15%), Positives = 89/321 (27%), Gaps = 46/321 (14%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYGVREHTLKENLVNSKNMSFLITNLERGVEYEFRIAGQ 68
I L W P+ G I Y V + E+ + L + +
Sbjct: 610 QIILKWKPPSDPNGNITHYLVFW----ERQAEDSELFELDYCLKGLKLPSRTWSPPFESE 665
Query: 69 NHIGYGQETVRYYTTPEGPPTGPPANISHHFQTPDVVCITWDPPL------RTHRNGQIV 122
+ + Q + I + T++ L +
Sbjct: 666 DSQKHNQSEYEDSAGECCSCPKTDSQILKELE-ESSFRKTFEDYLHNVVFVPRPSRKRRS 724
Query: 123 LYNVKFHKKIDANNVIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTA 182
L +V + + + + V S L Y E+QA + P + ++A
Sbjct: 725 LGDVGNAGNNEEHRPFEKVVNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSA 784
Query: 183 RDMVRA-----PLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQK 237
R M A V + V + W+ G I+ Y++ Y E+L
Sbjct: 785 RTMPEAKADDIVGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCD-- 842
Query: 238 SIPLTESSNIARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGL 297
++K L L L Y+V + A ++ G
Sbjct: 843 --------------------------TRKHFALERGCRLRGLSP-GNYSVRIRATSLAGN 875
Query: 298 GRLSGKVTVKVKP-EDVPLSL 317
G + V DVP ++
Sbjct: 876 GSWTEPTYFYVTDYLDVPSNI 896
Score = 110 bits (276), Expect = 3e-26
Identities = 41/199 (20%), Positives = 61/199 (30%), Gaps = 22/199 (11%)
Query: 1 MLKEEPEVTIELVWSQPT---------QTYGEILGYRVKYGVREHTLKENLVNSKNMSFL 51
+LKE E + + LG G E V +K S +
Sbjct: 692 ILKELEESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKE-SLV 750
Query: 52 ITNLERGVEYEFRIAGQNHIGYGQ-----ETVRYYTTPEGPPTGPPANISHHFQTPDVVC 106
I+ L Y + N + V T PE ++H +VV
Sbjct: 751 ISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTHEIFENNVVH 810
Query: 107 ITWDPPLRTHRNGQIVLYNVKFHKKIDAN----NVIHRNTTQTKAVFSNLEEGIEYSAEV 162
+ W P NG IVLY V + + D + + L G YS +
Sbjct: 811 LMWQEP--KEPNGLIVLYEVSYRRYGDEELHLCDTRKHFALERGCRLRGLSPG-NYSVRI 867
Query: 163 QAITKAGPGPWSPKLSLMT 181
+A + AG G W+
Sbjct: 868 RATSLAGNGSWTEPTYFYV 886
Score = 77.3 bits (189), Expect = 2e-15
Identities = 35/333 (10%), Positives = 91/333 (27%), Gaps = 40/333 (12%)
Query: 59 VEYEFRIAGQNHIGYGQETVRYYTTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRN 118
+ ++G + + S+ + D + + W+P
Sbjct: 439 IHKMEEVSGTKGRQERNDIALKTNGDQASCENELLKFSYIRTSFDKILLRWEPY-WPPDF 497
Query: 119 GQIVLYNVKFHKKIDAN-------------------------NVIHRNTTQTKAVFSNLE 153
++ + + + + N + ++ + L+
Sbjct: 498 RDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLK 557
Query: 154 EGIEYSAEVQAITKAG-----PGPWSPKLSLMTARDMVRAPLGVKALATSDQSVEVWWKP 208
+Y+ V+ + G S + + T PL +++ S + + WKP
Sbjct: 558 PWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKP 617
Query: 209 VPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNIARIFYTMTAVEDLDEWSQKSV 268
G I Y +F+ + E + L +R + ED + +Q
Sbjct: 618 PSDPNGNITHYLVFWERQ--AEDSELFELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEY 675
Query: 269 PLTESAELTSLEKFTEYAVAVAARTVNGLGRLSGKVTVKVKPEDVPLSLRAHDVSTHSMT 328
+ + + ++ + + K V + + +
Sbjct: 676 EDSAGECCSCPKTDSQILKELEESSF-------RKTFEDYLHNVVFVPRPSRKRRSLGDV 728
Query: 329 LSWSPPIKLNPVKYKEVSEKIQERRLQKYGQYR 361
+ + P + E + L+ + YR
Sbjct: 729 GNAGNNEEHRPFEKVVNKESLVISGLRHFTGYR 761
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 123 bits (310), Expect = 9e-31
Identities = 58/381 (15%), Positives = 108/381 (28%), Gaps = 60/381 (15%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYGVREHTLK--------ENLVNSKNMSFLITNLERGVE 60
+E+ WS E + Y V+ + + + + +T++
Sbjct: 176 QLEVKWSSKFNISIEPVIYVVQRRWNYGIHPSEDDATHWQTVAQTTDERVQLTDIRPSRW 235
Query: 61 YEFRIAGQNHIGYGQ--ETVRYYTTPEGPPTGPP------ANISHHFQTPDVVCITWDPP 112
Y+FR+A N G +++ + + P P AN + + V I WD P
Sbjct: 236 YQFRVAAVNVHGTRGFTAPSKHFRSSKDPSAPPAPANLRLANSTVNSDGSVTVTIVWDLP 295
Query: 113 LRTHRNGQIVLYNVKFHKKIDANNVI-----HRNTT---QTKAVFSNLEEGIEYSAEVQA 164
+ + Y V + + + +++ R TT Q + L+ +Y E+QA
Sbjct: 296 --EEPDIPVHHYKVFWSWMVSSKSLVPTKKKRRKTTDGFQNSVILEKLQPDCDYVVELQA 353
Query: 165 ITKAGPGPWSP---KLSLMTARDMVRAPLGVKALATSDQSVEVWWKPVPAGRGKILGYQI 221
IT G L + VK Q+ + + P ++
Sbjct: 354 ITYWGQTRLKSAKVSLHFTSTHATNNKEQLVKTRKGGIQTQLPFQRRRPTRPLEVGAPFY 413
Query: 222 FYTMTAVEDLDEWSQKSIPLTESSNIARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEK 281
V+ W + P ++ + + L L
Sbjct: 414 QDGQLQVKVY--WKKTEDPTVNRYHVRWFPEACAHNRTTGSEASSGMTHENYIILQDLSF 471
Query: 282 FTEYAVAVAARTVNGLGRLSGKV----------------------------TVKVKPEDV 313
+Y V V + V KPE++
Sbjct: 472 SCKYKVTVQPIRPKSHSKAEAVFFTTPPCSALKGKSHKPIGCLGEAGHVLSKVLAKPENL 531
Query: 314 PLSLRAHDVSTHSMTLSWSPP 334
S DV+ + SW
Sbjct: 532 SASFIVQDVNI-TGHFSWKMA 551
Score = 121 bits (304), Expect = 5e-30
Identities = 52/397 (13%), Positives = 97/397 (24%), Gaps = 89/397 (22%)
Query: 7 EVTIELVWSQPTQTYGEILGYRVKYGVR--------EHTLKENLVNSKNMSFLITNLERG 58
VT+ +VW P + + Y+V + + + S ++ L+
Sbjct: 285 SVTVTIVWDLPEEPDIPVHHYKVFWSWMVSSKSLVPTKKKRRKTTDGFQNSVILEKLQPD 344
Query: 59 VEYEFRIAGQNHIGYGQ---ETVRYYTTPEGPPTGPPANISHHFQTPDV----------- 104
+Y + + G + V + T +
Sbjct: 345 CDYVVELQAITYWGQTRLKSAKVSLHFTSTHATNNKEQLVKTRKGGIQTQLPFQRRRPTR 404
Query: 105 ---------------VCITWDPPLRTHRNGQIVLY--NVKFHKKIDANNVIHRNTTQTKA 147
V + W N V + H + + T +
Sbjct: 405 PLEVGAPFYQDGQLQVKVYWKKTEDPTVNRYHVRWFPEACAHNRTTGSEASSGMTHENYI 464
Query: 148 VFSNLEEGIEYSAEVQAITKAGPGPWSPKL----------------------SLMTARDM 185
+ +L +Y VQ I + +
Sbjct: 465 ILQDLSFSCKYKVTVQPIRPKSHSKAEAVFFTTPPCSALKGKSHKPIGCLGEAGHVLSKV 524
Query: 186 VRAPLGVKAL---ATSDQSVEVWWKPVPA-GRGKILGYQIFYTMTAVEDLDEWSQKSIPL 241
+ P + A + + WK A + G+Q+ + E E Q S+P
Sbjct: 525 LAKPENLSASFIVQDVNITGHFSWKMAKANLYQPMTGFQVTWA----EVTTESRQNSLPN 580
Query: 242 TESSNIARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLS 301
+ S SQ + +L T Y + V T G G +
Sbjct: 581 SIISQ-----------------SQILPSDHYVLTVPNLRPSTLYRLEVQVLTPGGEGPAT 623
Query: 302 GKVTVKVKPEDVPLSLRAHDVSTHSMTLSWSPPIKLN 338
T + PE P S + + P +
Sbjct: 624 -IKTFRT-PELPPSSAHRSHLKHRHPH-HYKPSPERY 657
Score = 97.0 bits (240), Expect = 9e-22
Identities = 39/291 (13%), Positives = 79/291 (27%), Gaps = 48/291 (16%)
Query: 72 GYGQETVRYYTTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNV----- 126
G G T +G P P + + + W + + + V+Y V
Sbjct: 144 GCGHTCQVPKTLYKGVPLKPRKELRFTELQSGQLEVKWSSK--FNISIEPVIYVVQRRWN 201
Query: 127 ---KFHKKIDANNVIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTAR 183
+ + TT + +++ Y V A+ G ++ +
Sbjct: 202 YGIHPSEDDATHWQTVAQTTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSS 261
Query: 184 DMVRAP--------LGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWS 235
AP + +V + W + Y++F++ +
Sbjct: 262 KDPSAPPAPANLRLANSTVNSDGSVTVTIVWDLPEEPDIPVHHYKVFWSWMVSSKSLVPT 321
Query: 236 QKSIPLTESSNIARIFYTMTAVEDLDEWSQKSVPLTE-SAELTSLEKFTEYAVAVAARTV 294
+K +K+ + S L L+ +Y V + A T
Sbjct: 322 KK-------------------------KRRKTTDGFQNSVILEKLQPDCDYVVELQAITY 356
Query: 295 NGLGRLSG-KVTVKVKPEDVPLS---LRAHDVSTHSMTLSWSPPIKLNPVK 341
G RL KV++ + L L + P++
Sbjct: 357 WGQTRLKSAKVSLHFTSTHATNNKEQLVKTRKGGIQTQLPFQRRRPTRPLE 407
Score = 66.1 bits (160), Expect = 8e-12
Identities = 20/116 (17%), Positives = 40/116 (34%), Gaps = 17/116 (14%)
Query: 4 EEPEVTIELVWSQPTQT-YGEILGYRVKYGVREHTLKEN-----------LVNSKNMSFL 51
++ +T W Y + G++V + ++N ++ S +
Sbjct: 538 QDVNITGHFSWKMAKANLYQPMTGFQVTWAEVTTESRQNSLPNSIISQSQILPSDHYVLT 597
Query: 52 ITNLERGVEYEFRIAGQNHIGYGQETVRYYTTPEGPPTGPPA-----NISHHFQTP 102
+ NL Y + G G T++ + TPE PP+ HH++
Sbjct: 598 VPNLRPSTLYRLEVQVLTPGGEGPATIKTFRTPELPPSSAHRSHLKHRHPHHYKPS 653
Score = 63.1 bits (152), Expect = 8e-11
Identities = 23/184 (12%), Positives = 46/184 (25%), Gaps = 36/184 (19%)
Query: 162 VQAITKAGPGPWSPKLSLMTARDMVRAPLGVKALATSDQSVEVWWKPVPAGRGKILGYQI 221
V+ G G + ++ ++ +EV W + + Y +
Sbjct: 137 VKKCCSNGCGHTCQVPKTLYKGVPLKPRKELRFTELQSGQLEVKWSSKFNISIEPVIYVV 196
Query: 222 FYTMTAVEDLDEWSQKSIPLTESSNIARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEK 281
E D W + E +LT +
Sbjct: 197 QRRWNYGIHPSED------------------------DATHWQTVAQTTDERVQLTDIRP 232
Query: 282 FTEYAVAVAARTVNGLGRLSGKVTVKVKPEDVP-----------LSLRAHDVSTHSMTLS 330
Y VAA V+G + + + P + + + ++T+
Sbjct: 233 SRWYQFRVAAVNVHGTRGFT-APSKHFRSSKDPSAPPAPANLRLANSTVNSDGSVTVTIV 291
Query: 331 WSPP 334
W P
Sbjct: 292 WDLP 295
Score = 33.0 bits (74), Expect = 0.20
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 4/54 (7%)
Query: 293 TVNGLGRLS--GKVTVKVKPEDVPLSLRAHDVSTHSMTLSWSPPIKLN--PVKY 342
NG G K K P LR ++ + + + WS ++ PV Y
Sbjct: 141 CSNGCGHTCQVPKTLYKGVPLKPRKELRFTELQSGQLEVKWSSKFNISIEPVIY 194
>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain,
fibron type III, cell adhesion; 1.80A {Homo sapiens}
PDB: 1x5k_A
Length = 211
Score = 116 bits (292), Expect = 1e-30
Identities = 41/226 (18%), Positives = 72/226 (31%), Gaps = 34/226 (15%)
Query: 88 PTGPPANISHHFQTPDVVCITWDPPL--RTHRNGQIVLYNVKFHKKIDAN-NVIHRNTTQ 144
P PP + + D + ITW + + Y V++ I AN + N T
Sbjct: 4 PMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATT 63
Query: 145 TKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTARD---MVRAPLGVKALATSDQS 201
+ + L+ Y V WS T + V + ++
Sbjct: 64 LSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVVSKEGKPKT 123
Query: 202 VEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNIARIFYTMTAVEDLD 261
+ V W+P GKI GY I+Y+ ++ +W + +
Sbjct: 124 IIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPVV--------------------- 162
Query: 262 EWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLSGKVTVK 307
+ ++ L T Y + AR G+G +S V +
Sbjct: 163 -------GNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFR 201
Score = 113 bits (284), Expect = 1e-29
Identities = 40/185 (21%), Positives = 71/185 (38%), Gaps = 14/185 (7%)
Query: 9 TIELVWSQPT----QTYGEILGYRVKYGVR-EHTLKENLVNSKNMSFLITNLERGVEYEF 63
TI + W+ + Q + Y V++ K N+ +S+L+T L+ YEF
Sbjct: 20 TIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTLSYLVTGLKPNTLYEF 79
Query: 64 RIAGQNHIGYGQET-VRYYTTPEGPPTGPPANISHHFQ--TPDVVCITWDPPLRTHRNGQ 120
+ + + TT E PT PP +++ + P + + W PP + NG+
Sbjct: 80 SVMVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVVSKEGKPKTIIVNWQPP--SEANGK 137
Query: 121 IVLYNVKFHKKIDAN----NVIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPK 176
I Y + + ++A + + L Y ++QA G GP S
Sbjct: 138 ITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEA 197
Query: 177 LSLMT 181
+ T
Sbjct: 198 VQFRT 202
Score = 75.2 bits (185), Expect = 6e-16
Identities = 24/161 (14%), Positives = 45/161 (27%), Gaps = 42/161 (26%)
Query: 188 APLGVKALATSDQSVEVWWKPVPA----GRGKILGYQIFYTMTAVEDLDEWSQKSIPLTE 243
P+GV+A S ++ + W Y + + K+ T
Sbjct: 7 PPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWK---TNIPANTKYKNANAT- 62
Query: 244 SSNIARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLSGK 303
T S +T L+ T Y +V S
Sbjct: 63 ---------------------------TLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMT 95
Query: 304 VTVKVKPEDVP------LSLRAHDVSTHSMTLSWSPPIKLN 338
E VP +++ + + ++ ++W PP + N
Sbjct: 96 AHGTT-FELVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEAN 135
Score = 30.2 bits (68), Expect = 0.87
Identities = 5/25 (20%), Positives = 14/25 (56%)
Query: 310 PEDVPLSLRAHDVSTHSMTLSWSPP 334
P P+ ++A +S ++ ++W+
Sbjct: 4 PMMPPVGVQASILSHDTIRITWADN 28
>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural
protein; 1.65A {Homo sapiens}
Length = 197
Score = 112 bits (282), Expect = 2e-29
Identities = 44/181 (24%), Positives = 68/181 (37%), Gaps = 9/181 (4%)
Query: 9 TIELVWSQPTQTYG-EILGYRVKY--GVREHTLKENLVNSKNMSFLITNLERGVEYEFRI 65
++ L W P G +I Y V+ R+ N S+ + L+ G Y FR+
Sbjct: 21 SVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVA-TNCHKTSWKVDQLQEGCSYYFRV 79
Query: 66 AGQNHIGYGQ--ETVRYYTTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVL 123
+N G G ET P PP I+ T + V ++W+ P +I+
Sbjct: 80 LAENEYGIGLPAETAE-SVKASERP-LPPGKITLMDVTRNSVSLSWEKPEHDG-GSRILG 136
Query: 124 YNVKFHKKIDANNVIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTAR 183
Y V+ K T+A + L +G EYS V A + G + A+
Sbjct: 137 YIVEMQTKGSDKWATCATVKVTEATITGLIQGEEYSFRVSAQNEKGISDPRQLSVPVIAK 196
Query: 184 D 184
D
Sbjct: 197 D 197
Score = 89.3 bits (222), Expect = 6e-21
Identities = 49/228 (21%), Positives = 80/228 (35%), Gaps = 42/228 (18%)
Query: 90 GPPANISHHFQTPDVVCITWDPPLRTHRNGQIVL-YNVKFHKKIDANNVIHR---NTTQT 145
GPP ++ T V +TWDPP G + Y V K+ N +T
Sbjct: 7 GPPQDLKVKEVTKTSVTLTWDPP--LLDGGSKIKNYIV--EKRESTRKAYSTVATNCHKT 62
Query: 146 KAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTARDMVRAPLGVKALATSDQSVEV- 204
L+EG Y V A + G G + + A + P + + + SV +
Sbjct: 63 SWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASERPLPPGKITLMDVTRNSVSLS 122
Query: 205 WWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNIARIFYTMTAVEDLDEWS 264
W KP G +ILGY + + D+W+
Sbjct: 123 WEKPEHDGGSRILGYIVEMQT--------------------------------KGSDKWA 150
Query: 265 QKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLSGKVTVKVKPED 312
+ A +T L + EY+ V+A+ G+ +++V V +D
Sbjct: 151 TCATVKVTEATITGLIQGEEYSFRVSAQNEKGISDPR-QLSVPVIAKD 197
Score = 62.4 bits (152), Expect = 1e-11
Identities = 29/152 (19%), Positives = 49/152 (32%), Gaps = 38/152 (25%)
Query: 188 APLGVKALATSDQSVEVWWKPVPAGRG--KILGYQIFYTMTAVEDLDEWSQKSIPLTESS 245
P +K + SV + W P P G KI Y + E + +
Sbjct: 8 PPQDLKVKEVTKTSVTLTWDP-PLLDGGSKIKNYIV-----------EKREST------- 48
Query: 246 NIARIFYTMTAVEDLDEWSQKSVPLTE-SAELTSLEKFTEYAVAVAARTVNGLGRLSGKV 304
+S + + S ++ L++ Y V A G+G +
Sbjct: 49 --------------RKAYSTVATNCHKTSWKVDQLQEGCSYYFRVLAENEYGIGLPAETA 94
Query: 305 TVKVKPE--DVPLSLRAHDVSTHSMTLSWSPP 334
E P + DV+ +S++LSW P
Sbjct: 95 ESVKASERPLPPGKITLMDVTRNSVSLSWEKP 126
Score = 32.7 bits (75), Expect = 0.14
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 312 DVPLSLRAHDVSTHSMTLSWSPP 334
P L+ +V+ S+TL+W PP
Sbjct: 7 GPPQDLKVKEVTKTSVTLTWDPP 29
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera
phosphorylation, transmembrane, tyrosine-protein kinase,
glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB:
2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Length = 536
Score = 113 bits (284), Expect = 1e-27
Identities = 49/312 (15%), Positives = 84/312 (26%), Gaps = 47/312 (15%)
Query: 14 WSQPTQTYGEILGYRVKYGVREHTLKENLVNSKNMSFLITNLERGV-EYEFRIAGQNHIG 72
W P GY + + S + E + E + + G
Sbjct: 258 WLVPIGQCLCQAGYEKVEDACQACSPGFFKFEASESPCLECPEHTLPSPEGATSCECEEG 317
Query: 73 YGQETVRYYTTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKK- 131
+ + + P P P ++ V + W PP + + ++Y+V +
Sbjct: 318 FFRAPQDPASMPCTRPPSAPHYLTAVG-MGAKVELRWTPPQDSG-GREDIVYSVTCEQCW 375
Query: 132 -----------IDANNVIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLM 180
+ T+T S+LE + Y+ V+A S
Sbjct: 376 PESGECGPCEASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTA 435
Query: 181 TARDMVRAPLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIP 240
+ P V+ S S+ V W P + ++ Y++ Y + D S
Sbjct: 436 SVSINQTEPPKVRLEGRSTTSLSVSWSIPPPQQSRVWKYEVTYR----KKGDSNSYNVRR 491
Query: 241 LTESSNIARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRL 300
S L L T Y V V A T G G
Sbjct: 492 TEGF----------------------------SVTLDDLAPDTTYLVQVQALTQEGQGAG 523
Query: 301 SGKVTVKVKPED 312
S + +
Sbjct: 524 SKVHEFQTLSPE 535
Score = 67.9 bits (165), Expect = 2e-12
Identities = 39/219 (17%), Positives = 59/219 (26%), Gaps = 35/219 (15%)
Query: 159 SAEVQAITKAGPGPWSPKLSLMTARDMVRAPLGVKALATSDQSVEVWWK-PVPAGRGKIL 217
+ G + M AP + A+ VE+ W P +G + +
Sbjct: 307 EGATSCECEEGFFRAPQDPASMPCTRPPSAPHYLTAVGMGA-KVELRWTPPQDSGGREDI 365
Query: 218 GYQIFYTMTAVEDLDEWSQKSIPLTESSNIARIFYTMTAVEDLDEWSQKSVPLTE-SAEL 276
Y + E E +S+ LT S +
Sbjct: 366 VYSVTCEQCWPES---------------------GECGPCEASVRYSEPPHGLTRTSVTV 404
Query: 277 TSLEKFTEYAVAVAARTVNGLGRLSGKVTVK--VKPEDVPLSLRAHDVSTHSMTLSWSPP 334
+ LE Y V AR S + P +R ST S+++SWS P
Sbjct: 405 SDLEPHMNYTFTVEARNGVSGLVTSRSFRTASVSINQTEPPKVRLEGRSTTSLSVSWSIP 464
Query: 335 IKLNPV--KYK-EVSEKIQERRLQKYGQYRYFETRDESY 370
KY+ +K Y T S
Sbjct: 465 PPQQSRVWKYEVTYRKKGDSN------SYNVRRTEGFSV 497
Score = 63.6 bits (154), Expect = 4e-11
Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 3/81 (3%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYGVREHTLKENLVNSKNMSFLITNLERGVEYEFRIAGQ 68
++ + WS P + Y V Y + + N+ ++ S + +L Y ++
Sbjct: 456 SLSVSWSIPPPQQSRVWKYEVTYRKKGDSNSYNVRRTEGFSVTLDDLAPDTTYLVQVQAL 515
Query: 69 NHIGYGQ--ETVRYYT-TPEG 86
G G + + T +PEG
Sbjct: 516 TQEGQGAGSKVHEFQTLSPEG 536
>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding;
2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
PDB: 2ibb_A
Length = 214
Score = 106 bits (266), Expect = 5e-27
Identities = 30/197 (15%), Positives = 53/197 (26%), Gaps = 23/197 (11%)
Query: 9 TIELVWSQPTQTYGEILGYRVKY--------------GVREHTLKENLVNSKNMSFLITN 54
++ L W P I+ ++V+Y + K N K+ + +T+
Sbjct: 17 SVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTD 76
Query: 55 LERGVEYEFRIAGQNHIGYGQ-----ETVRYYTTPEGPPTGPPANISHHFQTPDVVCITW 109
L+ Y FRI + P P + + V + W
Sbjct: 77 LKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPELLEIEEYSETAVVLHW 136
Query: 110 DPPLRTHRNGQIVLYNVKFHKKIDANN---VIHRNTTQTKAVFSNLEEGIEYSAEVQAIT 166
I Y + A + LE Y ++Q+ +
Sbjct: 137 SLASDAD-EHLITGYYAYYRPSSSAGEYFKATIEGAHARSFKIAPLETATMYEFKLQSFS 195
Query: 167 KAGPGPWSPKLSLMTAR 183
A +S T R
Sbjct: 196 AASASEFSALKQGRTQR 212
Score = 77.2 bits (190), Expect = 1e-16
Identities = 31/241 (12%), Positives = 64/241 (26%), Gaps = 51/241 (21%)
Query: 89 TGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKK--------------IDA 134
T PP + + + V + W P + IV++ V++
Sbjct: 2 TYPPTPPNVTRLSDESVMLRWMVP--RNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGK 59
Query: 135 NNVIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSP--KLSLMTARDMVR---AP 189
A ++L+ Y + A+ S + + P
Sbjct: 60 PKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVP 119
Query: 190 LGVKALATSDQSVEVWWK-PVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNIA 248
++ S+ +V + W A I GY +Y + E+ + +I
Sbjct: 120 ELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPS--SSAGEYFKATIEGAH----- 172
Query: 249 RIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLSGKVTVKV 308
S ++ LE T Y + + + S +
Sbjct: 173 ----------------------ARSFKIAPLETATMYEFKLQSFSAASASEFSALKQGRT 210
Query: 309 K 309
+
Sbjct: 211 Q 211
Score = 61.0 bits (148), Expect = 5e-11
Identities = 25/157 (15%), Positives = 46/157 (29%), Gaps = 25/157 (15%)
Query: 189 PLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNIA 248
P SD+SV + W I+ +++ Y M W +
Sbjct: 5 PTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVG--KRKNWQTTN---------- 52
Query: 249 RIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLSG------ 302
+ + + +A +T L+ Y + A N + S
Sbjct: 53 ------DNIPYGKPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFY 106
Query: 303 -KVTVKVKPEDVPLSLRAHDVSTHSMTLSWSPPIKLN 338
+ + P VP L + S ++ L WS +
Sbjct: 107 LQPGAALDPMPVPELLEIEEYSETAVVLHWSLASDAD 143
>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor;
2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A
1lwr_A
Length = 209
Score = 104 bits (261), Expect = 2e-26
Identities = 32/184 (17%), Positives = 57/184 (30%), Gaps = 12/184 (6%)
Query: 9 TIELVWSQPTQTYG-EILGYRVKY-----GVREHTLKENLVNSKNMSFLITNLERGVEYE 62
T ++ + +P T G IL Y+ ++ V + S I L+ Y
Sbjct: 23 TAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYA 82
Query: 63 FRIAGQNHIGYGQ--ETVRYYTTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQ 120
R+A N G G+ + T P P P + + + +
Sbjct: 83 VRLAALNGKGLGEISAASEFKTQPVREP-SAPKLEGQMGEDGNSIKVNLIKQ--DDGGSP 139
Query: 121 IVLYNVKFHKKIDANN-VIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSL 179
I Y V++ I + + +L+ EY V A + G + +
Sbjct: 140 IRHYLVRYRALSSEWKPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQGKSKAAHFVFR 199
Query: 180 MTAR 183
A
Sbjct: 200 TAAA 203
Score = 84.1 bits (208), Expect = 5e-19
Identities = 32/225 (14%), Positives = 55/225 (24%), Gaps = 40/225 (17%)
Query: 83 TPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKK-----IDANNV 137
P+ P + + +D P I+ Y ++
Sbjct: 4 AQADTPSSPSIDQVE--PYSSTAQVQFDEP-EATGGVPILKYKAEWRAVGEEVWHSKWYD 60
Query: 138 IHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMT-ARDMVRAPLGVKALA 196
+ + L+ Y+ + A+ G G S T AP +
Sbjct: 61 AKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKLEGQMG 120
Query: 197 TSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNIARIFYTMTA 256
S++V G I Y + Y EW
Sbjct: 121 EDGNSIKVNLIKQDDGGSPIRHYLVRYR----ALSSEWKP-------------------- 156
Query: 257 VEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLS 301
+ ++ L SL+ EY V V A G + +
Sbjct: 157 -------EIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQGKSKAA 194
Score = 59.8 bits (145), Expect = 1e-10
Identities = 27/150 (18%), Positives = 44/150 (29%), Gaps = 30/150 (20%)
Query: 188 APLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNI 247
+P + S + + +P G IL Y+ + E W K E+S
Sbjct: 11 SPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEV---WHSKWYDAKEASM- 66
Query: 248 ARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLSGKVTVK 307
+ L+ T YAV +AA GLG +S K
Sbjct: 67 -----------------------EGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFK 103
Query: 308 VKPEDV---PLSLRAHDVSTHSMTLSWSPP 334
+P P +S+ ++
Sbjct: 104 TQPVREPSAPKLEGQMGEDGNSIKVNLIKQ 133
Score = 56.0 bits (135), Expect = 3e-09
Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 1/81 (1%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYGVREHT-LKENLVNSKNMSFLITNLERGVEYEFRIAG 67
+I++ + I Y V+Y E + S + ++ +L+ EYE +
Sbjct: 125 SIKVNLIKQDDGGSPIRHYLVRYRALSSEWKPEIRLPSGSDHVMLKSLDWNAEYEVYVVA 184
Query: 68 QNHIGYGQETVRYYTTPEGPP 88
+N G + + T
Sbjct: 185 ENQQGKSKAAHFVFRTAAAHH 205
>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 103
Score = 98.9 bits (247), Expect = 2e-25
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 82 TTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANNVIHRN 141
++ P+G P N+ T + WDPP+ RNG+I+ Y V F + I++ +
Sbjct: 2 SSGSSGPSGFPQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVF-RDINSQQELQNI 60
Query: 142 TTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMT 181
TT T+ + L+ Y +V+A T G GP SP + T
Sbjct: 61 TTDTRFTLTGLKPDTTYDIKVRAWTSKGSGPLSPSIQSRT 100
Score = 65.8 bits (161), Expect = 1e-13
Identities = 20/125 (16%), Positives = 37/125 (29%), Gaps = 35/125 (28%)
Query: 188 APLGVKALATSDQSVEVWWKPVPAGR--GKILGYQIFYTMTAVEDLDEWSQKSIPLTESS 245
P + + + E+ W P G+I+ Y + +
Sbjct: 11 FPQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVFR--------------------- 49
Query: 246 NIARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLSGKVT 305
+ + +++ LT L+ T Y + V A T G G LS +
Sbjct: 50 ------------DINSQQELQNITTDTRFTLTGLKPDTTYDIKVRAWTSKGSGPLSPSIQ 97
Query: 306 VKVKP 310
+ P
Sbjct: 98 SRTMP 102
Score = 53.5 bits (129), Expect = 2e-09
Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 5/80 (6%)
Query: 9 TIELVWSQPTQTY--GEILGYRVKYGVREHTLKENLVNSKNMSFLITNLERGVEYEFRIA 66
T EL W P G I+ Y V + ++ +E + + F +T L+ Y+ ++
Sbjct: 24 TTELAWDPPVLAERNGRIISYTVVF-RDINSQQELQNITTDTRFTLTGLKPDTTYDIKVR 82
Query: 67 GQNHIGYGQ--ETVRYYTTP 84
G G +++ T P
Sbjct: 83 AWTSKGSGPLSPSIQSRTMP 102
Score = 35.4 bits (82), Expect = 0.005
Identities = 11/71 (15%), Positives = 26/71 (36%), Gaps = 19/71 (26%)
Query: 310 PEDVPLSLRAHDVSTHSMTLSWSPPIKLNP--------VKYKEVSEKIQERR-------- 353
P P +L ++T + L+W PP+ V +++++ + + +
Sbjct: 8 PSGFPQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDINSQQELQNITTDTRFT 67
Query: 354 ---LQKYGQYR 361
L+ Y
Sbjct: 68 LTGLKPDTTYD 78
>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 124
Score = 98.5 bits (246), Expect = 3e-25
Identities = 32/121 (26%), Positives = 50/121 (41%), Gaps = 1/121 (0%)
Query: 65 IAGQNHIGYGQET-VRYYTTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVL 123
+ N G G T T P+ PP N+S + ++W PP +NG I
Sbjct: 4 GSSGNRYGPGVSTDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFITG 63
Query: 124 YNVKFHKKIDANNVIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTAR 183
Y ++ K + +F+ LE+G +YS +V A+T G GP S + T
Sbjct: 64 YKIRHRKTTRRGEMETLEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNWYTAETPE 123
Query: 184 D 184
+
Sbjct: 124 N 124
Score = 87.0 bits (216), Expect = 6e-21
Identities = 37/154 (24%), Positives = 61/154 (39%), Gaps = 36/154 (23%)
Query: 162 VQAITKAGPGPWSPKLSLMTARDM-VRAPLGVKALATSDQSVEVWWKPVPAG--RGKILG 218
+ + GPG + ++++T D+ P V + +S++V W P P+G G I G
Sbjct: 4 GSSGNRYGPGVSTDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFITG 63
Query: 219 YQIFYTMTAVEDLDEWSQKSIPLTESSNIARIFYTMTAVEDLDEWSQKSVPLTESAELTS 278
Y+I + T +++ T N T
Sbjct: 64 YKIRHRKT--------TRRGEMETLEPN------------------------NLWYLFTG 91
Query: 279 LEKFTEYAVAVAARTVNGLGRLSGKVTVKVKPED 312
LEK ++Y+ V+A TVNG G S T + PE+
Sbjct: 92 LEKGSQYSFQVSAMTVNGTGPPSNWYTAET-PEN 124
Score = 56.9 bits (138), Expect = 3e-10
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 9 TIELVWSQPTQTY--GEILGYRVKYGVREHTLKENLVNSKNMSFLITNLERGVEYEFRIA 66
+I++ W P G I GY++++ + + N+ +L T LE+G +Y F+++
Sbjct: 44 SIKVSWLPPPSGTQNGFITGYKIRHRKTTRRGEMETLEPNNLWYLFTGLEKGSQYSFQVS 103
Query: 67 GQNHIGYGQETVRYY-TTPE 85
G G + Y TPE
Sbjct: 104 AMTVNGTGPPSNWYTAETPE 123
Score = 46.2 bits (110), Expect = 1e-06
Identities = 17/100 (17%), Positives = 37/100 (37%), Gaps = 25/100 (25%)
Query: 286 AVAVAARTVNGLGRLSGKVTVKVKPEDVP----LSLRAHDVSTHSMTLSWSPPIKLNP-- 339
+ ++ G G + +TV DVP ++ V++ S+ +SW PP
Sbjct: 1 GSSGSSGNRYGPGVSTDDITVVT-LSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNG 59
Query: 340 ------VKYKEVSEKIQERR------------LQKYGQYR 361
+++++ + + + L+K QY
Sbjct: 60 FITGYKIRHRKTTRRGEMETLEPNNLWYLFTGLEKGSQYS 99
>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 132
Score = 95.1 bits (237), Expect = 8e-24
Identities = 33/130 (25%), Positives = 52/130 (40%), Gaps = 3/130 (2%)
Query: 72 GYGQET-VRYYTTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHK 130
G + T P+ P N+S + + I W PP +NGQI Y +++ K
Sbjct: 1 GSSGSSGDVAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRK 60
Query: 131 KIDANNVIHR--NTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTARDMVRA 188
++V + TQ + L+ G EY+ V A+T G GP + LS T +
Sbjct: 61 ASRKSDVTETLVSGTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDWLSAETFESDLDE 120
Query: 189 PLGVKALATS 198
+ S
Sbjct: 121 TRVPEVSGPS 130
Score = 86.6 bits (215), Expect = 1e-20
Identities = 33/159 (20%), Positives = 58/159 (36%), Gaps = 36/159 (22%)
Query: 169 GPGPWSPKLSLMTARDM-VRAPLGVKALATSDQSVEVWWKPVPAG--RGKILGYQIFYTM 225
G S +++ T D+ AP + + +S+ + W+P G+I GY+I Y
Sbjct: 1 GSSGSSGDVAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRK 60
Query: 226 TAVEDLDEWSQKSIPLTESSNIARIFYTMTAVEDLDEWSQKSVPLTE-SAELTSLEKFTE 284
+ ++ V T+ S + L++ TE
Sbjct: 61 A-------------------------------SRKSDVTETLVSGTQLSQLIEGLDRGTE 89
Query: 285 YAVAVAARTVNGLGRLSGKVTVKVKPEDVPLSLRAHDVS 323
Y VAA T+NG G + ++ + E R +VS
Sbjct: 90 YNFRVAALTINGTGPATDWLSAET-FESDLDETRVPEVS 127
Score = 62.0 bits (151), Expect = 5e-12
Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 5/90 (5%)
Query: 9 TIELVWSQPTQTY--GEILGYRVKY--GVREHTLKENLVNSKNMSFLITNLERGVEYEFR 64
+I + W P G+I GY+++Y R+ + E LV+ +S LI L+RG EY FR
Sbjct: 34 SIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTETLVSGTQLSQLIEGLDRGTEYNFR 93
Query: 65 IAGQNHIGYGQETVRYY-TTPEGPPTGPPA 93
+A G G T T E
Sbjct: 94 VAALTINGTGPATDWLSAETFESDLDETRV 123
Score = 34.6 bits (80), Expect = 0.018
Identities = 18/92 (19%), Positives = 30/92 (32%), Gaps = 27/92 (29%)
Query: 296 GLGRLSGKVTVKVKPEDVPLS----LRAHDVSTHSMTLSWSPPIKLNP--------VKYK 343
G SG V V+ DVP + L ++ S+ + W PP ++Y+
Sbjct: 1 GSSGSSGDVAVRT-LSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYR 59
Query: 344 EVSEKIQERR--------------LQKYGQYR 361
+ S K L + +Y
Sbjct: 60 KASRKSDVTETLVSGTQLSQLIEGLDRGTEYN 91
>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 134
Score = 94.7 bits (236), Expect = 1e-23
Identities = 33/133 (24%), Positives = 52/133 (39%), Gaps = 6/133 (4%)
Query: 72 GYGQET-VRYYTTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHK 130
G + T + P+ PP + V ++W PP RNG I Y+V +
Sbjct: 1 GSSGSSGTIEARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEA 60
Query: 131 KIDANNVIHR----NTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTARDM- 185
+ H + + LE+ EY V+A T GPGP S + + T D+
Sbjct: 61 VDGEDRGRHVVDGISREHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTDEDVP 120
Query: 186 VRAPLGVKALATS 198
P V++ +S
Sbjct: 121 SGPPRKVESGPSS 133
Score = 89.0 bits (221), Expect = 1e-21
Identities = 40/149 (26%), Positives = 49/149 (32%), Gaps = 32/149 (21%)
Query: 169 GPGPWSPKLSLMTARDM-VRAPLGVKALATSDQSVEVWWKPVPAG--RGKILGYQIFYTM 225
G S + TA+ P V ++ +V V W P PA G I Y + Y
Sbjct: 1 GSSGSSGTIEARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEA 60
Query: 226 TAVEDLDEWSQKSIPLTESSNIARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEY 285
ED I S +L LEK+TEY
Sbjct: 61 VDGEDRGRHVVDGISRE----------------------------HSSWDLVGLEKWTEY 92
Query: 286 AVAVAARTVNGLGRLSGKVTVKVKPEDVP 314
V V A T G G S V V+ EDVP
Sbjct: 93 RVWVRAHTDVGPGPESSPVLVRT-DEDVP 120
Score = 67.0 bits (164), Expect = 8e-14
Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 7/95 (7%)
Query: 9 TIELVWSQPTQTY--GEILGYRVKY----GVREHTLKENLVNSKNMSFLITNLERGVEYE 62
T+ + W P G I Y V Y G + ++ ++ S+ + LE+ EY
Sbjct: 34 TVRVSWVPPPADSRNGVITQYSVAYEAVDGEDRGRHVVDGISREHSSWDLVGLEKWTEYR 93
Query: 63 FRIAGQNHIGYGQETVRYY-TTPEGPPTGPPANIS 96
+ +G G E+ T E P+GPP +
Sbjct: 94 VWVRAHTDVGPGPESSPVLVRTDEDVPSGPPRKVE 128
Score = 33.5 bits (77), Expect = 0.039
Identities = 16/94 (17%), Positives = 32/94 (34%), Gaps = 29/94 (30%)
Query: 296 GLGRLSGKVTVKVKPEDVP----LSLRAHDVSTHSMTLSWSPPIKLNP--------VKYK 343
G SG + + + P + + + ++ +SW PP + V Y+
Sbjct: 1 GSSGSSGTIEART-AQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYE 59
Query: 344 EVSEKIQERR----------------LQKYGQYR 361
V + + R L+K+ +YR
Sbjct: 60 AVDGEDRGRHVVDGISREHSSWDLVGLEKWTEYR 93
>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular
matrix, adhesion, fusion protein, structural protein;
2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1
Length = 186
Score = 95.2 bits (237), Expect = 3e-23
Identities = 32/167 (19%), Positives = 62/167 (37%), Gaps = 13/167 (7%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYGVREHTLKENLVNSKNMSFLITNLERGVEYEFRIAGQ 68
T+ L W +P + YR+ Y E + + SF++ L+ G EY + +
Sbjct: 22 TLSLRWRRPV---AKFDRYRLTYVSPSGKKNEMEIPVDSTSFILRGLDAGTEYTISLVAE 78
Query: 69 NHIGYGQETVRYYTTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKF 128
+ T +T G P IS T + ++W PP ++ Y V +
Sbjct: 79 KGRHKSKPTTIKGSTVVGSPK----GISFSDITENSATVSWTPP-----RSRVDSYRVSY 129
Query: 129 HKKIDAN-NVIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWS 174
NV+ + ++T+ L G++Y+ + ++
Sbjct: 130 VPITGGTPNVVTVDGSKTRTKLVKLVPGVDYNVNIISVKGFEESEPI 176
Score = 80.9 bits (200), Expect = 4e-18
Identities = 28/218 (12%), Positives = 61/218 (27%), Gaps = 46/218 (21%)
Query: 90 GPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANNVIHRNTTQTKAVF 149
P ++ T + + W P + Y + + N + T +
Sbjct: 8 DNPKDLEVSDPTETTLSLRWRRP-----VAKFDRYRLTYVSPSGKKNEMEIPVDSTSFIL 62
Query: 150 SNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTARDMVRAPLGVKALATSDQSVEVWWKPV 209
L+ G EY+ + A + + +V +P G+ ++ S V W P
Sbjct: 63 RGLDAGTEYTISLVAEKGRHKSKP----TTIKGSTVVGSPKGISFSDITENSATVSWTPP 118
Query: 210 PAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNIARIFYTMTAVEDLDEWSQKSVP 269
++ Y++ Y + +V
Sbjct: 119 R---SRVDSYRVSYV--------------------------------PITGGTPNVVTVD 143
Query: 270 LTE-SAELTSLEKFTEYAVAVAARTVNGLGR-LSGKVT 305
++ +L L +Y V + + +SG +
Sbjct: 144 GSKTRTKLVKLVPGVDYNVNIISVKGFEESEPISGILK 181
Score = 65.9 bits (161), Expect = 7e-13
Identities = 27/156 (17%), Positives = 56/156 (35%), Gaps = 39/156 (25%)
Query: 180 MTARDMVRAPLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSI 239
+ A + P ++ ++ ++ + W+ K Y++ Y + ++ I
Sbjct: 1 INAGTDLDNPKDLEVSDPTETTLSLRWRRPV---AKFDRYRLTYV----SPSGKKNEMEI 53
Query: 240 PLTESSNIARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGR 299
P+ + S L L+ TEY +++ A G +
Sbjct: 54 PVDST----------------------------SFILRGLDAGTEYTISLVA--EKGRHK 83
Query: 300 LSGKVTVKVK-PEDVPLSLRAHDVSTHSMTLSWSPP 334
S T+K P + D++ +S T+SW+PP
Sbjct: 84 -SKPTTIKGSTVVGSPKGISFSDITENSATVSWTPP 118
Score = 50.5 bits (121), Expect = 1e-07
Identities = 14/76 (18%), Positives = 23/76 (30%), Gaps = 4/76 (5%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYG-VREHTLKENLVNSKNMSFLITNLERGVEYEFRIAG 67
+ + W+ P + YRV Y + T V+ + L GV+Y I
Sbjct: 110 SATVSWTPPR---SRVDSYRVSYVPITGGTPNVVTVDGSKTRTKLVKLVPGVDYNVNIIS 166
Query: 68 QNHIGYGQETVRYYTT 83
+ T
Sbjct: 167 VKGFEESEPISGILKT 182
>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer,
neovascularization, cell adhesion, protein binding,
oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A
Length = 203
Score = 94.5 bits (235), Expect = 8e-23
Identities = 36/170 (21%), Positives = 68/170 (40%), Gaps = 14/170 (8%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYGVREHT--LKENLVNSKNMSFLITNLERGVEYEFRIA 66
+I L W+ I+GYR+ + E+ V+S + +T LE G++Y+ +
Sbjct: 38 SIGLRWTPLNS--STIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVY 95
Query: 67 GQNHIGYGQETVRYYTTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNV 126
+ G T T PPT ++ PD + +TW PP + + + V
Sbjct: 96 TVKNGGESTPTTLTQQTAVPPPT----DLRFTNIGPDTMRVTWAPP----PSIDLTNFLV 147
Query: 127 KFHKKIDANNV--IHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWS 174
++ + +V + + + V +NL G EY V ++ +
Sbjct: 148 RYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPL 197
Score = 92.2 bits (229), Expect = 6e-22
Identities = 38/243 (15%), Positives = 83/243 (34%), Gaps = 46/243 (18%)
Query: 67 GQNHIGYGQ-ETVRYYTTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYN 125
G +H + + + P P ++S T + + W P + I+ Y
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMEVP--QPTDLSFVDITDSSIGLRWTPL----NSSTIIGYR 55
Query: 126 VKFHKKIDAN--NVIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTAR 183
+ + +++ + LE GI+Y V + G + +T +
Sbjct: 56 ITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVYTVKNGGESTPTT----LTQQ 111
Query: 184 DMVRAPLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTE 243
V P ++ ++ V W P P+ + + + Y + V++ ++ ++ SI ++
Sbjct: 112 TAVPPPTDLRFTNIGPDTMRVTWAPPPS--IDLTNFLVRY--SPVKNEEDVAELSISPSD 167
Query: 244 SSNIARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGR-LSG 302
+ + LT+L TEY V+V++ L G
Sbjct: 168 N----------------------------AVVLTNLLPGTEYVVSVSSVYEQHESTPLRG 199
Query: 303 KVT 305
+
Sbjct: 200 RQK 202
Score = 66.8 bits (163), Expect = 5e-13
Identities = 27/161 (16%), Positives = 54/161 (33%), Gaps = 34/161 (21%)
Query: 174 SPKLSLMTARDMVRAPLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDE 233
S L + V P + + +D S+ + W P+ + I+GY+I A +
Sbjct: 11 SSGLVPRGSHMEVPQPTDLSFVDITDSSIGLRWTPLNSST--IIGYRITVV--AAGEGIP 66
Query: 234 WSQKSIPLTESSNIARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAART 293
+ + + +T LE +Y ++V
Sbjct: 67 IFEDFVDSSVGY----------------------------YTVTGLEPGIDYDISVYTVK 98
Query: 294 VNGLGRLSGKVTVKVKPEDVPLSLRAHDVSTHSMTLSWSPP 334
G + +T + P LR ++ +M ++W+PP
Sbjct: 99 NGGESTPT-TLTQQTAV-PPPTDLRFTNIGPDTMRVTWAPP 137
Score = 49.4 bits (118), Expect = 3e-07
Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 4/77 (5%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYGVR--EHTLKENLVNSKNMSFLITNLERGVEYEFRIA 66
T+ + W+ P ++ + V+Y E + E ++ + + ++TNL G EY ++
Sbjct: 129 TMRVTWAPPPS--IDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVS 186
Query: 67 GQNHIGYGQETVRYYTT 83
T
Sbjct: 187 SVYEQHESTPLRGRQKT 203
>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine
phosphatase delta, R-PTP-delta, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 121
Score = 91.7 bits (228), Expect = 1e-22
Identities = 33/147 (22%), Positives = 53/147 (36%), Gaps = 30/147 (20%)
Query: 169 GPGPWSPKLSLMTARDM-VRAPLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTA 227
G S + T+ AP V+A S ++ V WK G+I GY
Sbjct: 1 GSSGSSGPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEPEEPNGQIQGY-------- 52
Query: 228 VEDLDEWSQKSIPLTESSNIARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAV 287
R++YTM + ++ W + +V ++ + +L Y+V
Sbjct: 53 ---------------------RVYYTMDPTQHVNNWMKHNVADSQITTIGNLVPQKTYSV 91
Query: 288 AVAARTVNGLGRLSGKVTVKVKPEDVP 314
V A T G G LS + V + P
Sbjct: 92 KVLAFTSIGDGPLSSDIQVITQTGSGP 118
Score = 82.1 bits (203), Expect = 3e-19
Identities = 27/117 (23%), Positives = 40/117 (34%), Gaps = 6/117 (5%)
Query: 72 GYGQE-TVRYYTTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHK 130
G T E P+ P ++ + + + W P NGQI Y V +
Sbjct: 1 GSSGSSGPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEPE--EPNGQIQGYRVYYTM 58
Query: 131 ---KIDANNVIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTARD 184
+ N + H NL YS +V A T G GP S + ++T
Sbjct: 59 DPTQHVNNWMKHNVADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVITQTG 115
Score = 60.5 bits (147), Expect = 1e-11
Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 6/89 (6%)
Query: 9 TIELVWSQPTQTYGEILGYRVKY---GVREHTLKENLVNSKNMSFLITNLERGVEYEFRI 65
TI + W +P + G+I GYRV Y + + + I NL Y ++
Sbjct: 34 TILVQWKEPEEPNGQIQGYRVYYTMDPTQHVNNWMKHNVADSQITTIGNLVPQKTYSVKV 93
Query: 66 AGQNHIGYGQE-TVRYYTTPEGPPTGPPA 93
IG G + T G P +
Sbjct: 94 LAFTSIGDGPLSSDIQVITQTGSG--PSS 120
Score = 37.0 bits (86), Expect = 0.002
Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 296 GLGRLSGKVTVKVK---PEDVPLSLRAHDVSTHSMTLSWSPPIKLN 338
G SG V + P P ++A +S+ ++ + W P + N
Sbjct: 1 GSSGSSGPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEPEEPN 46
>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER,
receptor tyrosine kinase mertk, FN3 domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 124
Score = 89.5 bits (222), Expect = 7e-22
Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 4/104 (3%)
Query: 82 TTPEGPPTGPPANIS-HHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKK---IDANNV 137
+T EG P+ P N++ ++ D V I W P ++G++V Y + + I +
Sbjct: 12 STTEGAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHVWQSAGISKELL 71
Query: 138 IHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMT 181
++A S + + A+T+ G GP+S + +
Sbjct: 72 EEVGQNGSRARISVQVHNATCTVRIAAVTRGGVGPFSDPVKIFI 115
Score = 76.0 bits (187), Expect = 4e-17
Identities = 28/152 (18%), Positives = 44/152 (28%), Gaps = 33/152 (21%)
Query: 169 GPGPWSPKLSLMTARDM-VRAPLGVKALAT-SDQSVEVWWKPVPAG--RGKILGYQIFYT 224
G S + T APL V S +V++ W P G+++GY+I +
Sbjct: 1 GSSGSSGWILASTTEGAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHV 60
Query: 225 MTAVEDLDEWSQKSIPLTESSNIARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTE 284
K + N A ++
Sbjct: 61 WQ-----SAGISKELLEEVGQN------------------------GSRARISVQVHNAT 91
Query: 285 YAVAVAARTVNGLGRLSGKVTVKVKPEDVPLS 316
V +AA T G+G S V + + P S
Sbjct: 92 CTVRIAAVTRGGVGPFSDPVKIFIPAHSGPSS 123
Score = 54.8 bits (132), Expect = 1e-09
Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 7/88 (7%)
Query: 9 TIELVWSQPTQTY--GEILGYRVKYGVREHTLKENL---VNSKNMSFLITNLERGVEYEF 63
+++ W +P GE++GYR+ + + + + L V I+
Sbjct: 35 NVDIRWMKPPTKQQDGELVGYRISHVWQSAGISKELLEEVGQNGSRARISVQVHNATCTV 94
Query: 64 RIAGQNHIGYGQ--ETVRYYTTPEGPPT 89
RIA G G + V+ + P+
Sbjct: 95 RIAAVTRGGVGPFSDPVKIFIPAHSGPS 122
Score = 29.4 bits (66), Expect = 0.89
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 6/44 (13%)
Query: 296 GLGRLSGKVTVKVKPEDVP----LSLRAH-DVSTHSMTLSWSPP 334
G SG + E P L++ + S+ ++ + W P
Sbjct: 1 GSSGSSGWILAST-TEGAPSVAPLNVTVFLNESSDNVDIRWMKP 43
>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type
III domain containing protein, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 115
Score = 88.5 bits (220), Expect = 1e-21
Identities = 26/146 (17%), Positives = 48/146 (32%), Gaps = 34/146 (23%)
Query: 169 GPGPWSPKLSLMTARDMVRAPLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAV 228
G S + ++T + PL KA S+ S+ + W P I Y++ Y
Sbjct: 1 GSSGSSGDIQVITQTGVPGQPLNFKAEPESETSILLSWTPPR--SDTIANYELVYK---- 54
Query: 229 EDLDEWSQKSIPLTESSNIARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVA 288
+ E + ++ S L L+ + Y
Sbjct: 55 ----------------------------DGEHGEEQRITIEPGTSYRLQGLKPNSLYYFR 86
Query: 289 VAARTVNGLGRLSGKVTVKVKPEDVP 314
+AAR+ GLG + +++ + P
Sbjct: 87 LAARSPQGLGASTAEISARTMQSSGP 112
Score = 70.4 bits (173), Expect = 3e-15
Identities = 20/101 (19%), Positives = 34/101 (33%), Gaps = 5/101 (4%)
Query: 82 TTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANNVIHRN 141
T G P G P N ++ + ++W PP R+ I Y + +
Sbjct: 12 ITQTGVP-GQPLNFKAEPESETSILLSWTPP----RSDTIANYELVYKDGEHGEEQRITI 66
Query: 142 TTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTA 182
T L+ Y + A + G G + ++S T
Sbjct: 67 EPGTSYRLQGLKPNSLYYFRLAARSPQGLGASTAEISARTM 107
Score = 65.1 bits (159), Expect = 3e-13
Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 4/83 (4%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYGVREHTLKENLVNSKNMSFLITNLERGVEYEFRIAGQ 68
+I L W+ P I Y + Y EH ++ + S+ + L+ Y FR+A +
Sbjct: 33 SILLSWTPPRS--DTIANYELVYKDGEHGEEQRITIEPGTSYRLQGLKPNSLYYFRLAAR 90
Query: 69 NHIGYGQ--ETVRYYTTPEGPPT 89
+ G G + T P+
Sbjct: 91 SPQGLGASTAEISARTMQSSGPS 113
Score = 40.8 bits (96), Expect = 8e-05
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Query: 296 GLGRLSGKVTVKVKPEDVP---LSLRAHDVSTHSMTLSWSPPIKLNPVKYK 343
G SG + V VP L+ +A S S+ LSW+PP Y+
Sbjct: 1 GSSGSSGDIQVIT-QTGVPGQPLNFKAEPESETSILLSWTPPRSDTIANYE 50
>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII
domain, dscaml1 protein, structural genomics; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 122
Score = 87.0 bits (216), Expect = 5e-21
Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 6/117 (5%)
Query: 74 GQETVRYYTTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKID 133
G +T E P GPP +++ T + +TW P + +NG I Y + + +
Sbjct: 1 GSSGSSGISTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSP 60
Query: 134 ANN------VIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTARD 184
+N + NL++ +Y VQA +AG GP S +++ T
Sbjct: 61 GSNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATTLES 117
Score = 78.6 bits (194), Expect = 6e-18
Identities = 33/147 (22%), Positives = 48/147 (32%), Gaps = 31/147 (21%)
Query: 171 GPWSPKLSLMTARDM-VRAPLGVKALATSDQSVEVWWKPVPAG--RGKILGYQIFYTMTA 227
G S + T P+ V + QS++V WK G I GYQI Y +
Sbjct: 1 GS-SGSSGISTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENS 59
Query: 228 VEDLDEWSQKSIPLTESSNIARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAV 287
++S + T +E L +L+KF +Y V
Sbjct: 60 PGSNGQYSIVEMKATGD--------------------------SEVYTLDNLKKFAQYGV 93
Query: 288 AVAARTVNGLGRLSGKVTVKVKPEDVP 314
V A G G S ++ E P
Sbjct: 94 VVQAFNRAGTGPSSSEINATT-LESGP 119
Score = 59.3 bits (144), Expect = 3e-11
Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 9/90 (10%)
Query: 9 TIELVWSQPTQTY--GEILGYRVKY------GVREHTLKENLVNSKNMSFLITNLERGVE 60
+I++ W P + G I GY++ Y ++++ E + + + NL++ +
Sbjct: 31 SIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMKATGDSEVYTLDNLKKFAQ 90
Query: 61 YEFRIAGQNHIGYGQETVRYY-TTPEGPPT 89
Y + N G G + TT E P+
Sbjct: 91 YGVVVQAFNRAGTGPSSSEINATTLESGPS 120
Score = 31.6 bits (72), Expect = 0.15
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 310 PEDVPLSLRAHDVSTHSMTLSWSPP 334
P+ P+ + V++ S+ ++W P
Sbjct: 15 PDGPPMDVTLQPVTSQSIQVTWKAP 39
>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.2.1
Length = 107
Score = 86.3 bits (214), Expect = 6e-21
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYGVREHT-LKENLVNSKNMSFLITNLERGVEYEFRIAG 67
T L W P + GE+LGYR++Y + + F +T L +G Y FR+A
Sbjct: 22 TALLQWHPPKELPGELLGYRLQYCRADEARPNTIDFGKDDQHFTVTGLHKGTTYIFRLAA 81
Query: 68 QNHIGYGQETVRYYTTPEGPPTGPPA 93
+N G G+E + TPE GP +
Sbjct: 82 KNRAGLGEEFEKEIRTPEDLS-GPSS 106
Score = 65.1 bits (159), Expect = 2e-13
Identities = 22/111 (19%), Positives = 39/111 (35%), Gaps = 6/111 (5%)
Query: 82 TTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKK-IDANNVIHR 140
++ P P IS + + W PP G+++ Y +++ + N I
Sbjct: 2 SSGSSGPGRPTMMIST--TAMNTALLQWHPPKEL--PGELLGYRLQYCRADEARPNTIDF 57
Query: 141 NTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTARDMVRAPLG 191
+ L +G Y + A +AG G K + T D+ G
Sbjct: 58 GKDDQHFTVTGLHKGTTYIFRLAAKNRAGLGEEFEK-EIRTPEDLSGPSSG 107
Score = 47.4 bits (113), Expect = 3e-07
Identities = 23/123 (18%), Positives = 38/123 (30%), Gaps = 33/123 (26%)
Query: 192 VKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNIARIF 251
+ T+ + + W P G++LGY++ Y D + +
Sbjct: 13 MMISTTAMNTALLQWHPPKELPGELLGYRLQYC---RADEARPNTIDFGKDDQH------ 63
Query: 252 YTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLSGKVTVKVKPE 311
+T +T L K T Y +AA+ GLG PE
Sbjct: 64 FT----------------------VTGLHKGTTYIFRLAAKNRAGLGEEF--EKEIRTPE 99
Query: 312 DVP 314
D+
Sbjct: 100 DLS 102
Score = 30.8 bits (70), Expect = 0.25
Identities = 8/46 (17%), Positives = 16/46 (34%), Gaps = 8/46 (17%)
Query: 310 PEDVP--LSLRAHDVSTHSMTLSWSPPIKLN------PVKYKEVSE 347
P ++ + ++ L W PP +L ++Y E
Sbjct: 4 GSSGPGRPTMMISTTAMNTALLQWHPPKELPGELLGYRLQYCRADE 49
>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase
receptor HTK, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 109
Score = 85.6 bits (212), Expect = 1e-20
Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 5/105 (4%)
Query: 82 TTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDAN--NVIH 139
++ P ++I +P + + W P +G ++ Y VK+H+K +V
Sbjct: 2 SSGSSGP-PAVSDIRVTRSSPSSLSLAWAVP--RAPSGAVLDYEVKYHEKGAEGPSSVRF 58
Query: 140 RNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTARD 184
T++ +A L+ G Y +V+A ++AG GP+ + T D
Sbjct: 59 LKTSENRAELRGLKRGASYLVQVRARSEAGYGPFGQEHHSQTQLD 103
Score = 67.1 bits (164), Expect = 4e-14
Identities = 23/129 (17%), Positives = 38/129 (29%), Gaps = 30/129 (23%)
Query: 188 APLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNI 247
A ++ +S S+ + W A G +L Y++ Y E
Sbjct: 10 AVSDIRVTRSSPSSLSLAWAVPRAPSGAVLDYEVKYHEKGAEGPSSVRFLKTSEN----- 64
Query: 248 ARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLSGKVTVK 307
AEL L++ Y V V AR+ G G + +
Sbjct: 65 -------------------------RAELRGLKRGASYLVQVRARSEAGYGPFGQEHHSQ 99
Query: 308 VKPEDVPLS 316
+ + P S
Sbjct: 100 TQLDSGPSS 108
Score = 66.0 bits (161), Expect = 1e-13
Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYGVR--EHTLKENLVNSKNMSFLITNLERGVEYEFRIA 66
++ L W+ P G +L Y VKY + E + + + L+RG Y ++
Sbjct: 23 SLSLAWAVPRAPSGAVLDYEVKYHEKGAEGPSSVRFLKTSENRAELRGLKRGASYLVQVR 82
Query: 67 GQNHIGYGQ--ETVRYYTTPEGPPTG 90
++ GYG + T + P+
Sbjct: 83 ARSEAGYGPFGQEHHSQTQLDSGPSS 108
Score = 33.2 bits (76), Expect = 0.032
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 3/32 (9%)
Query: 310 PEDVP---LSLRAHDVSTHSMTLSWSPPIKLN 338
P +R S S++L+W+ P +
Sbjct: 4 GSSGPPAVSDIRVTRSSPSSLSLAWAVPRAPS 35
>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 119
Score = 85.5 bits (212), Expect = 2e-20
Identities = 29/147 (19%), Positives = 41/147 (27%), Gaps = 32/147 (21%)
Query: 169 GPGPWSPKLSLMTARDM-VRAPLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTA 227
G S + +A+D AP V S + V W+ V + YQI Y
Sbjct: 1 GSSGSSGVAVINSAQDAPSEAPTEVGVKVLSSSEISVHWEHVL--EKIVESYQIRY---- 54
Query: 228 VEDLDEWSQKSIPLTESSNIARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAV 287
W+ + SA L +L T+Y +
Sbjct: 55 ------WAAHDKEEAA-------------------NRVQVTSQEYSARLENLLPDTQYFI 89
Query: 288 AVAARTVNGLGRLSGKVTVKVKPEDVP 314
V A G G S + K P
Sbjct: 90 EVGACNSAGCGPPSDMIEAFTKKASGP 116
Score = 75.9 bits (187), Expect = 5e-17
Identities = 21/103 (20%), Positives = 39/103 (37%), Gaps = 7/103 (6%)
Query: 82 TTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKF---HKKIDANNVI 138
+ + P+ P + + + + W+ + Y +++ H K +A N +
Sbjct: 12 NSAQDAPSEAPTEVGVKVLSSSEISVHWEHV----LEKIVESYQIRYWAAHDKEEAANRV 67
Query: 139 HRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMT 181
+ + A NL +Y EV A AG GP S + T
Sbjct: 68 QVTSQEYSARLENLLPDTQYFIEVGACNSAGCGPPSDMIEAFT 110
Score = 58.9 bits (143), Expect = 5e-11
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 8/89 (8%)
Query: 9 TIELVWSQPTQTYGEILGYRVKY---GVREHTLKENLVNSKNMSFLITNLERGVEYEFRI 65
I + W + + Y+++Y +E V S+ S + NL +Y +
Sbjct: 34 EISVHWEHVLE--KIVESYQIRYWAAHDKEEAANRVQVTSQEYSARLENLLPDTQYFIEV 91
Query: 66 AGQNHIGYGQETVRYY-TTPEGPPTGPPA 93
N G G + T + P +
Sbjct: 92 GACNSAGCGPPSDMIEAFTKKASG--PSS 118
Score = 35.0 bits (81), Expect = 0.011
Identities = 7/43 (16%), Positives = 15/43 (34%), Gaps = 5/43 (11%)
Query: 296 GLGRLSGKVTVKVKPEDVPLS----LRAHDVSTHSMTLSWSPP 334
G SG + +D P + +S+ +++ W
Sbjct: 1 GSSGSSGVAVINS-AQDAPSEAPTEVGVKVLSSSEISVHWEHV 42
>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 111
Score = 84.3 bits (209), Expect = 4e-20
Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 4/102 (3%)
Query: 82 TTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKK-IDANNVIHR 140
++ + P I V + W P NG I+ Y +K+++K + +
Sbjct: 5 SSGQAAP-SQVVVIRQERAGQTSVSLLWQEPE--QPNGIILEYEIKYYEKDKEMQSYSTL 61
Query: 141 NTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTA 182
T+A S L+ G Y +V+A T AG G +S + + T
Sbjct: 62 KAVTTRATVSGLKPGTRYVFQVRARTSAGCGRFSQAMEVETG 103
Score = 68.5 bits (168), Expect = 2e-14
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 9 TIELVWSQPTQTYGEILGYRVKY-GVREHTLKENLVNSKNMSFLITNLERGVEYEFRIAG 67
++ L+W +P Q G IL Y +KY + + + + ++ L+ G Y F++
Sbjct: 26 SVSLLWQEPEQPNGIILEYEIKYYEKDKEMQSYSTLKAVTTRATVSGLKPGTRYVFQVRA 85
Query: 68 QNHIGYGQ--ETVRYYTT-PEGPPTG 90
+ G G+ + + T P GP +G
Sbjct: 86 RTSAGCGRFSQAMEVETGKPSGPSSG 111
Score = 62.4 bits (152), Expect = 2e-12
Identities = 26/130 (20%), Positives = 40/130 (30%), Gaps = 33/130 (25%)
Query: 188 APLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNI 247
+ ++ SV + W+ G IL Y+I Y
Sbjct: 13 QVVVIRQERAGQTSVSLLWQEPEQPNGIILEYEIKYYEK--------------------- 51
Query: 248 ARIFYTMTAVEDLDEWSQKSVPLTE-SAELTSLEKFTEYAVAVAARTVNGLGRLSGKVTV 306
D + S ++ A ++ L+ T Y V ART G GR S + V
Sbjct: 52 -----------DKEMQSYSTLKAVTTRATVSGLKPGTRYVFQVRARTSAGCGRFSQAMEV 100
Query: 307 KVKPEDVPLS 316
+ P S
Sbjct: 101 ETGKPSGPSS 110
Score = 35.8 bits (83), Expect = 0.004
Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 9/62 (14%)
Query: 310 PEDVP---LSLRAHDVSTHSMTLSWSPPIKLN------PVKYKEVSEKIQERRLQKYGQY 360
+ P + +R S++L W P + N +KY E +++Q K
Sbjct: 7 GQAAPSQVVVIRQERAGQTSVSLLWQEPEQPNGIILEYEIKYYEKDKEMQSYSTLKAVTT 66
Query: 361 RY 362
R
Sbjct: 67 RA 68
>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2,
NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 108
Score = 83.3 bits (206), Expect = 7e-20
Identities = 24/104 (23%), Positives = 43/104 (41%), Gaps = 4/104 (3%)
Query: 82 TTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANNVIHR- 140
++ P+ P + T + ++W P NG I+ Y +++++K
Sbjct: 2 SSGSSGPSTVP-IMHQVSATMRSITLSWPQP--EQPNGIILDYEIRYYEKEHNEFNSSMA 58
Query: 141 NTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTARD 184
+ A L G+ Y +V+A T AG G +S K+ T D
Sbjct: 59 RSQTNTARIDGLRPGMVYVVQVRARTVAGYGKFSGKMCFQTLTD 102
Score = 68.6 bits (168), Expect = 1e-14
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 9 TIELVWSQPTQTYGEILGYRVKY-GVREHTLKENLVNSKNMSFLITNLERGVEYEFRIAG 67
+I L W QP Q G IL Y ++Y + ++ S+ + I L G+ Y ++
Sbjct: 23 SITLSWPQPEQPNGIILDYEIRYYEKEHNEFNSSMARSQTNTARIDGLRPGMVYVVQVRA 82
Query: 68 QNHIGYGQ--ETVRYYTTPEGPPT 89
+ GYG+ + + T + P+
Sbjct: 83 RTVAGYGKFSGKMCFQTLTDSGPS 106
Score = 62.5 bits (152), Expect = 2e-12
Identities = 24/128 (18%), Positives = 42/128 (32%), Gaps = 33/128 (25%)
Query: 188 APLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNI 247
+ ++ + +S+ + W G IL Y+I Y
Sbjct: 10 TVPIMHQVSATMRSITLSWPQPEQPNGIILDYEIRYYEK--------------------- 48
Query: 248 ARIFYTMTAVEDLDEWSQKSVPLTE-SAELTSLEKFTEYAVAVAARTVNGLGRLSGKVTV 306
+ +E++ +A + L Y V V ARTV G G+ SGK+
Sbjct: 49 -----------EHNEFNSSMARSQTNTARIDGLRPGMVYVVQVRARTVAGYGKFSGKMCF 97
Query: 307 KVKPEDVP 314
+ + P
Sbjct: 98 QTLTDSGP 105
Score = 31.3 bits (71), Expect = 0.18
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 3/32 (9%)
Query: 310 PEDVP---LSLRAHDVSTHSMTLSWSPPIKLN 338
P + + S+TLSW P + N
Sbjct: 4 GSSGPSTVPIMHQVSATMRSITLSWPQPEQPN 35
>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 106
Score = 83.5 bits (207), Expect = 7e-20
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 4/103 (3%)
Query: 82 TTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANNVIHRN 141
++ P GP N+ +P + ITW+PP + NG + Y + F ++ +
Sbjct: 2 SSGSSGP-GPVENLQAVSTSPTSILITWEPPA--YANGPVQGYRL-FCTEVSTGKEQNIE 57
Query: 142 TTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTARD 184
L++ EYS A + GPG + ++++T D
Sbjct: 58 VDGLSYKLEGLKKFTEYSLRFLAYNRYGPGVSTDDITVVTLSD 100
Score = 68.0 bits (167), Expect = 2e-14
Identities = 26/127 (20%), Positives = 44/127 (34%), Gaps = 33/127 (25%)
Query: 188 APLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNI 247
++A++TS S+ + W+P G + GY++F T
Sbjct: 10 PVENLQAVSTSPTSILITWEPPAYANGPVQGYRLFCT----------------------- 46
Query: 248 ARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLSGKVTVK 307
+ V S +L L+KFTEY++ A G G + +TV
Sbjct: 47 ---------EVSTGKEQNIEVDGL-SYKLEGLKKFTEYSLRFLAYNRYGPGVSTDDITVV 96
Query: 308 VKPEDVP 314
+ P
Sbjct: 97 TLSDSGP 103
Score = 64.6 bits (158), Expect = 3e-13
Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYGVREHTLKENLVNSKNMSFLITNLERGVEYEFRIAGQ 68
+I + W P G + GYR+ ++N + +S+ + L++ EY R
Sbjct: 23 SILITWEPPAYANGPVQGYRLFCTEVSTGKEQN-IEVDGLSYKLEGLKKFTEYSLRFLAY 81
Query: 69 NHIGYGQ--ETVRYYTTPE-GPPTG 90
N G G + + T + GP +G
Sbjct: 82 NRYGPGVSTDDITVVTLSDSGPSSG 106
Score = 35.7 bits (83), Expect = 0.004
Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 20/72 (27%)
Query: 310 PEDVP---LSLRAHDVSTHSMTLSWSPPIKLN------PVKYKEVSEKIQERR------- 353
P +L+A S S+ ++W PP N + EVS ++
Sbjct: 4 GSSGPGPVENLQAVSTSPTSILITWEPPAYANGPVQGYRLFCTEVSTGKEQNIEVDGLSY 63
Query: 354 ----LQKYGQYR 361
L+K+ +Y
Sbjct: 64 KLEGLKKFTEYS 75
>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 130
Score = 83.2 bits (206), Expect = 1e-19
Identities = 27/118 (22%), Positives = 39/118 (33%), Gaps = 8/118 (6%)
Query: 69 NHIGYGQ--ETVRYYTTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNV 126
IG G T + P GPP I V + W PP NG I+ Y +
Sbjct: 7 GRIGDGSPSHPPILERTLDDVP-GPPMGILFPEVRTTSVRLIWQPPA--APNGIILAYQI 63
Query: 127 KFHKKIDANN---VIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMT 181
N V + + + L+ Y + A T+ G G + L + T
Sbjct: 64 THRLNTTTANTATVEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVTT 121
Score = 74.7 bits (184), Expect = 2e-16
Identities = 30/156 (19%), Positives = 48/156 (30%), Gaps = 30/156 (19%)
Query: 162 VQAITKAGPG-PWSPKLSLMTARDMVRAPLGVKALATSDQSVEVWWKPVPAGRGKILGYQ 220
+ + G G P P + T D+ P+G+ SV + W+P A G IL YQ
Sbjct: 3 SGSSGRIGDGSPSHPPILERTLDDVPGPPMGILFPEVRTTSVRLIWQPPAAPNGIILAYQ 62
Query: 221 IFYTMTAVEDLDEWSQKSIPLTESSNIARIFYTMTAVEDLDEWSQKSVPLTESAELTSLE 280
I + + + P T L+
Sbjct: 63 ITHRL--NTTTANT---------------------------ATVEVLAPSARQYTATGLK 93
Query: 281 KFTEYAVAVAARTVNGLGRLSGKVTVKVKPEDVPLS 316
+ Y + A+T G G + + V + P S
Sbjct: 94 PESVYLFRITAQTRKGWGEAAEALVVTTEKRSGPSS 129
Score = 70.1 bits (172), Expect = 7e-15
Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 4/88 (4%)
Query: 9 TIELVWSQPTQTYGEILGYRVKY---GVREHTLKENLVNSKNMSFLITNLERGVEYEFRI 65
++ L+W P G IL Y++ + +T ++ + T L+ Y FRI
Sbjct: 43 SVRLIWQPPAAPNGIILAYQITHRLNTTTANTATVEVLAPSARQYTATGLKPESVYLFRI 102
Query: 66 AGQNHIGYGQETVRYYTTPEGPPTGPPA 93
Q G+G+ T E +GP +
Sbjct: 103 TAQTRKGWGEAAEALVVTTE-KRSGPSS 129
Score = 46.6 bits (111), Expect = 1e-06
Identities = 14/78 (17%), Positives = 29/78 (37%), Gaps = 9/78 (11%)
Query: 288 AVAARTVNGLGRLSGKVTVKVKPEDVP---LSLRAHDVSTHSMTLSWSPPIKLN------ 338
+ + G G S ++ +DVP + + +V T S+ L W PP N
Sbjct: 2 SSGSSGRIGDGSPSHPPILERTLDDVPGPPMGILFPEVRTTSVRLIWQPPAAPNGIILAY 61
Query: 339 PVKYKEVSEKIQERRLQK 356
+ ++ + ++
Sbjct: 62 QITHRLNTTTANTATVEV 79
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 87.6 bits (217), Expect = 4e-19
Identities = 47/278 (16%), Positives = 79/278 (28%), Gaps = 42/278 (15%)
Query: 40 ENLVNSKNMSFLITNLERGVEYEFRIAGQNHIGYGQETVRYYTTPEGPPTGPPANISHHF 99
+ + M I + NH G Y P P +
Sbjct: 150 KTYSTGRKMILEIAPTSDNDFGRYNCTATNH--IGTRFQEYILALADVP-SSPYGVKIIE 206
Query: 100 QTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANN---VIHRNTTQTKAVFSNLEEGI 156
+ ++++ P +H I Y V K A+ ++ + QT V +NLE
Sbjct: 207 LSQTTAKVSFNKP-DSHGGVPIHHYQV--DVKEVASEIWKIVRSHGVQTMVVLNNLEPNT 263
Query: 157 EYSAEVQAITKAGPGPWSPKLSLMTARDMVRAPLGVKALATSDQSVEVWWKPVPAGRGKI 216
Y V A+ G G +S T +P + +S +S ++ G I
Sbjct: 264 TYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPPSIHGQPSSGKSFKLSITKQDDGGAPI 323
Query: 217 LGYQIFYTMTAVEDLDEWSQKSIPLTESSNIARIFYTMTAVEDLDEWSQKSVPLTESAEL 276
L Y + Y E D+W +K + + L
Sbjct: 324 LEYIVKYRSKDKE--DQWLEKKVQ----------------------------GNKDHIIL 353
Query: 277 TSLEKFTEYAVAVAARTVNGLGRLSGKVTVKVKPEDVP 314
L+ Y V + A G + + P
Sbjct: 354 EHLQWTMGYEVQITAANRLGYSEPT---VYEFSMPPKP 388
Score = 61.4 bits (149), Expect = 2e-10
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYGVREH----TLKENLVNSKNMSFLITNLERGVEYEFR 64
+ +L ++ IL Y VKY R E V ++ +L+ + YE +
Sbjct: 308 SFKLSITKQDDGGAPILEYIVKY--RSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQ 365
Query: 65 IAGQNHIGYGQETVRYYTTPEGP 87
I N +GY + TV ++ P P
Sbjct: 366 ITAANRLGYSEPTVYEFSMPPKP 388
Score = 57.5 bits (139), Expect = 3e-09
Identities = 35/169 (20%), Positives = 51/169 (30%), Gaps = 42/169 (24%)
Query: 188 APLGVKALATSDQSVEV-WWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSN 246
+P GVK + S + +V + KP G I YQ+ E ++
Sbjct: 198 SPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVK------------------EVAS 239
Query: 247 IARIFYTMTAVEDLDEWSQKSV-PLTESAELTSLEKFTEYAVAVAARTVNGLGRLSGKVT 305
+ W + L +LE T Y + VAA G G S
Sbjct: 240 --------------EIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEI 285
Query: 306 VKVKPEDVP--LSLRAHDVSTHSMTLSWSPPIKLN------PVKYKEVS 346
+ P P S+ S S LS + VKY+
Sbjct: 286 FQTLPVREPSPPSIHGQPSSGKSFKLSITKQDDGGAPILEYIVKYRSKD 334
Score = 37.9 bits (88), Expect = 0.006
Identities = 6/42 (14%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 294 VNGLGRLSGKVTVKVK-PEDVPLSLRAHDVSTHSMTLSWSPP 334
N +G + + + P ++ ++S + +S++ P
Sbjct: 178 TNHIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKP 219
>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 116
Score = 81.2 bits (201), Expect = 5e-19
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 4/103 (3%)
Query: 82 TTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANNVIHRN 141
P GP N+ + +P + +TW+ P+ NG+I Y + + +K + +
Sbjct: 12 QPEVQLP-GPAPNLRAYAASPTSITVTWETPV--SGNGEIQNYKLYYMEK-GTDKEQDVD 67
Query: 142 TTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTARD 184
+ + L++ EYS V A K GPG +P +++ T D
Sbjct: 68 VSSHSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDVAVRTLSD 110
Score = 77.8 bits (192), Expect = 9e-18
Identities = 28/146 (19%), Positives = 51/146 (34%), Gaps = 33/146 (22%)
Query: 169 GPGPWSPKLSLMTARDMVRAPLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAV 228
G S ++ + ++A A S S+ V W+ +G G+I Y+++Y
Sbjct: 1 GSSGSSGRVETQPEVQLPGPAPNLRAYAASPTSITVTWETPVSGNGEIQNYKLYYME--- 57
Query: 229 EDLDEWSQKSIPLTESSNIARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVA 288
+ D+ V + S + L+K+TEY+
Sbjct: 58 -----------------------------KGTDKEQDVDVS-SHSYTINGLKKYTEYSFR 87
Query: 289 VAARTVNGLGRLSGKVTVKVKPEDVP 314
V A +G G + V V+ + P
Sbjct: 88 VVAYNKHGPGVSTPDVAVRTLSDSGP 113
Score = 65.4 bits (160), Expect = 2e-13
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYGVREHTLKENLVNSKNMSFLITNLERGVEYEFRIAGQ 68
+I + W P GEI Y++ Y + KE V+ + S+ I L++ EY FR+
Sbjct: 33 SITVTWETPVSGNGEIQNYKLYYMEKGTD-KEQDVDVSSHSYTINGLKKYTEYSFRVVAY 91
Query: 69 NHIGYGQ--ETVRYYTTPE-GPPTG 90
N G G V T + GP +G
Sbjct: 92 NKHGPGVSTPDVAVRTLSDSGPSSG 116
Score = 42.3 bits (100), Expect = 3e-05
Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 21/86 (24%)
Query: 296 GLGRLSGKVTVKVKPEDVP---LSLRAHDVSTHSMTLSWSPPIKLNP------VKYKEVS 346
G SG+V + +P +LRA+ S S+T++W P+ N + Y E
Sbjct: 1 GSSGSSGRVETQP-EVQLPGPAPNLRAYAASPTSITVTWETPVSGNGEIQNYKLYYMEKG 59
Query: 347 EKIQERR-----------LQKYGQYR 361
++ L+KY +Y
Sbjct: 60 TDKEQDVDVSSHSYTINGLKKYTEYS 85
>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold,
fibronectin type III, NG-CAM related cell adhesion
molecule, structural genomics; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 125
Score = 80.9 bits (200), Expect = 9e-19
Identities = 20/112 (17%), Positives = 39/112 (34%), Gaps = 9/112 (8%)
Query: 82 TTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKF---------HKKI 132
+ E P P N+ + + + WDP G + Y + + +++
Sbjct: 8 HSGEDLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRH 67
Query: 133 DANNVIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTARD 184
++ ++T + LE Y+ V+ + G GP SP T
Sbjct: 68 IEKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNTPEG 119
Score = 72.8 bits (179), Expect = 6e-16
Identities = 30/130 (23%), Positives = 41/130 (31%), Gaps = 26/130 (20%)
Query: 187 RAPLGVKALATSDQSVEVWWKPVPAG--RGKILGYQIFYTMTAVEDLDEWSQKSIPLTES 244
AP V+ + EV W PVP RG + GY+I+Y W +S
Sbjct: 16 VAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYY----------WKTQSSSKRNR 65
Query: 245 SNIARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLSGKV 304
+I + T + L LE F+ Y + V G G S
Sbjct: 66 RHIEKKILTFQGSK-------------THGMLPGLEPFSHYTLNVRVVNGKGEGPASPDR 112
Query: 305 TVKVKPEDVP 314
PE
Sbjct: 113 VFN-TPEGSG 121
Score = 57.8 bits (140), Expect = 1e-10
Identities = 21/97 (21%), Positives = 29/97 (29%), Gaps = 14/97 (14%)
Query: 9 TIELVWSQPTQTY--GEILGYRVKY---------GVREHTLKENLVNSKNMSFLITNLER 57
E+ W G + GYR+ Y R K ++ LE
Sbjct: 30 LAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKKILTFQGSKTHGMLPGLEP 89
Query: 58 GVEYEFRIAGQNHIGYGQE-TVRYYTTPEGPPTGPPA 93
Y + N G G R + TPEG P +
Sbjct: 90 FSHYTLNVRVVNGKGEGPASPDRVFNTPEGSG--PSS 124
Score = 29.3 bits (66), Expect = 1.1
Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 5/38 (13%)
Query: 301 SGKVTVKVKPEDVPLS----LRAHDVSTHSMTLSWSPP 334
S + ED+P+ +R + V++ + W P
Sbjct: 2 SSGSSGHS-GEDLPMVAPGNVRVNVVNSTLAEVHWDPV 38
>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY
docking, cell adhesion, structural protein; NMR {Homo
sapiens}
Length = 201
Score = 81.6 bits (201), Expect = 3e-18
Identities = 29/183 (15%), Positives = 60/183 (32%), Gaps = 26/183 (14%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYGV--REHTLKENLVNSKNMSFLITNLERGVEYEFRIA 66
+ + W+ P I Y +++ KE + S+ I L+ GV YE ++
Sbjct: 17 SHPIQWNAPQP--SHISKYILRWRPKNSVGRWKEATIPGHLNSYTIKGLKPGVVYEGQLI 74
Query: 67 GQNHIGYGQETVRYYTT---------------PEGPPTGPPANISHHFQTPDVVCITWDP 111
G+ + T +TT + S T ++W
Sbjct: 75 SIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVATSESVTEITASSFVVSWVS 134
Query: 112 PLRTHRNGQIVLYNVKFHKKIDANNVIHRN--TTQTKAVFSNLEEGIEYSAEVQAITKAG 169
+ + + V++ + + + + +T T +L G +Y V I++ G
Sbjct: 135 A-----SDTVSGFRVEYELSEEGDEPQYLDLPSTATSVNIPDLLPGRKYIVNVYQISEDG 189
Query: 170 PGP 172
Sbjct: 190 EQS 192
Score = 58.9 bits (142), Expect = 2e-10
Identities = 32/228 (14%), Positives = 63/228 (27%), Gaps = 58/228 (25%)
Query: 91 PPANISHHFQ--TPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANN--VIHRNTTQTK 146
P + P+ I W+ P + I Y +++ K
Sbjct: 2 GPVEVFITETPSQPNSHPIQWNAP----QPSHISKYILRWRPKNSVGRWKEATIPGHLNS 57
Query: 147 AVFSNLEEGIEYSAEVQAITKAGPGPWSPK------------LSLMTARDMVRAPLGVKA 194
L+ G+ Y ++ +I + G + + +T +PL +
Sbjct: 58 YTIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVATS 117
Query: 195 L---ATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNIARIF 251
+ S V W + G+++ Y ++
Sbjct: 118 ESVTEITASSFVVSWVSAS---DTVSGFRVEYELS------------------------- 149
Query: 252 YTMTAVEDLDEWSQKSVPLTE-SAELTSLEKFTEYAVAVAARTVNGLG 298
E+ DE +P T S + L +Y V V + +G
Sbjct: 150 ------EEGDEPQYLDLPSTATSVNIPDLLPGRKYIVNVYQISEDGEQ 191
Score = 50.8 bits (121), Expect = 1e-07
Identities = 17/164 (10%), Positives = 37/164 (22%), Gaps = 49/164 (29%)
Query: 188 APLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNI 247
+ + + S + W P I Y + + + W + +IP +S
Sbjct: 4 VEVFITETPSQPNSHPIQWNA-PQP-SHISKYILRWR--PKNSVGRWKEATIPGHLNS-- 57
Query: 248 ARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLSGKVTVK 307
+ L+ Y + + G ++
Sbjct: 58 --------------------------YTIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTT 91
Query: 308 VKPED-----------------VPLSLRAHDVSTHSMTLSWSPP 334
V S +++ S +SW
Sbjct: 92 TSTSTPVTSNTVTGETTPFSPLVATSESVTEITASSFVVSWVSA 135
Score = 48.5 bits (115), Expect = 7e-07
Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 5/77 (6%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYGVREHT--LKENLVNSKNMSFLITNLERGVEYEFRIA 66
+ + W + + G+RV+Y + E + + S S I +L G +Y +
Sbjct: 127 SFVVSWVSAS---DTVSGFRVEYELSEEGDEPQYLDLPSTATSVNIPDLLPGRKYIVNVY 183
Query: 67 GQNHIGYGQETVRYYTT 83
+ G + T
Sbjct: 184 QISEDGEQSLILSTSQT 200
>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK,
fibronectin type III (FN3) domain, structural genomics,
NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1
Length = 107
Score = 78.7 bits (194), Expect = 3e-18
Identities = 18/103 (17%), Positives = 40/103 (38%), Gaps = 4/103 (3%)
Query: 82 TTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANNVIHRN 141
+ G + ++ + P + +TW + G + Y + + + H+
Sbjct: 3 SGSSGAESLSGLSLKLVKKEPRQLELTWAGSRPRNPGG-NLSYELHVLNQ---DEEWHQM 58
Query: 142 TTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTARD 184
+ + + + L+ Y V+ +T GPGP+SP T+
Sbjct: 59 VLEPRVLLTKLQPDTTYIVRVRTLTPLGPGPFSPDHEFRTSPP 101
Score = 55.2 bits (133), Expect = 7e-10
Identities = 25/130 (19%), Positives = 37/130 (28%), Gaps = 36/130 (27%)
Query: 188 APLGVKALATSDQSVEV-WWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSN 246
+ L +K + + +E+ W P G L Y++ +EW Q +
Sbjct: 12 SGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVL----NQDEEWHQMVL------- 60
Query: 247 IARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLSGKVTV 306
LT L+ T Y V V T G G S
Sbjct: 61 ------------------------EPRVLLTKLQPDTTYIVRVRTLTPLGPGPFSPDHEF 96
Query: 307 KVKPEDVPLS 316
+ P P S
Sbjct: 97 RTSPPSGPSS 106
Score = 47.1 bits (112), Expect = 5e-07
Identities = 16/85 (18%), Positives = 30/85 (35%), Gaps = 6/85 (7%)
Query: 7 EVTIELVWSQPTQTYGEILGYRVKYGVREHTLKENLVNSKNMSFLITNLERGVEYEFRIA 66
++ + S+P G L Y + ++ E L+T L+ Y R+
Sbjct: 25 QLELTWAGSRPRNPGG-NLSYELHVLNQDE---EWHQMVLEPRVLLTKLQPDTTYIVRVR 80
Query: 67 GQNHIGYGQ--ETVRYYTTPEGPPT 89
+G G + T+P P+
Sbjct: 81 TLTPLGPGPFSPDHEFRTSPPSGPS 105
Score = 30.5 bits (69), Expect = 0.27
Identities = 8/48 (16%), Positives = 14/48 (29%), Gaps = 7/48 (14%)
Query: 310 PEDVPLSLRAHDVSTHSMTLSWSPPIKLNP-------VKYKEVSEKIQ 350
LSL+ + L+W+ NP + E+
Sbjct: 9 ESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEEWH 56
>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related
receptor containing LDLR class A repeats, sorla; NMR
{Homo sapiens}
Length = 108
Score = 77.1 bits (190), Expect = 1e-17
Identities = 24/101 (23%), Positives = 39/101 (38%), Gaps = 4/101 (3%)
Query: 82 TTPEGPPTGPPA-NISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANNVIHR 140
++ P P +S + V+ W PP+ H +G I Y V++ + + +
Sbjct: 2 SSGSSGPDAPRNLQLSLPREAEGVIVGHWAPPI--HTHGLIREYIVEYSRS-GSKMWASQ 58
Query: 141 NTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMT 181
NL Y+ V A+T G G WS S+ T
Sbjct: 59 RAASNFTEIKNLLVNTLYTVRVAAVTSRGIGNWSDSKSITT 99
Score = 61.7 bits (150), Expect = 4e-12
Identities = 22/85 (25%), Positives = 32/85 (37%), Gaps = 4/85 (4%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYGVREHTLKENLVNSKNMSFLITNLERGVEYEFRIAGQ 68
I W+ P T+G I Y V+Y + + + N I NL Y R+A
Sbjct: 25 VIVGHWAPPIHTHGLIREYIVEYSRSGSKMWASQRAASN-FTEIKNLLVNTLYTVRVAAV 83
Query: 69 NHIGYGQ--ETVRYYTT-PEGPPTG 90
G G ++ T GP +G
Sbjct: 84 TSRGIGNWSDSKSITTIKGSGPSSG 108
Score = 56.7 bits (137), Expect = 2e-10
Identities = 24/131 (18%), Positives = 38/131 (29%), Gaps = 35/131 (26%)
Query: 188 AP--LGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESS 245
AP L + ++ + W P G I Y + Y+
Sbjct: 10 APRNLQLSLPREAEGVIVGHWAPPIHTHGLIREYIVEYSR-------------------- 49
Query: 246 NIARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLSGKVT 305
W+ + + E+ +L T Y V VAA T G+G S +
Sbjct: 50 ------------SGSKMWASQRAA-SNFTEIKNLLVNTLYTVRVAAVTSRGIGNWSDSKS 96
Query: 306 VKVKPEDVPLS 316
+ P S
Sbjct: 97 ITTIKGSGPSS 107
Score = 30.1 bits (68), Expect = 0.47
Identities = 7/34 (20%), Positives = 11/34 (32%), Gaps = 5/34 (14%)
Query: 310 PEDVP-----LSLRAHDVSTHSMTLSWSPPIKLN 338
P L L + + W+PPI +
Sbjct: 4 GSSGPDAPRNLQLSLPREAEGVIVGHWAPPIHTH 37
>1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 117
Score = 76.8 bits (189), Expect = 2e-17
Identities = 24/105 (22%), Positives = 39/105 (37%), Gaps = 4/105 (3%)
Query: 72 GYGQETVRYY-TTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHK 130
G + TT + PP+ PP N+ + T V + W+ ++ Y V +
Sbjct: 1 GSSGSSGTVNVTTKKTPPSQPPGNVVWNA-TDTKVLLNWEQVKAMENESEVTGYKVFYRT 59
Query: 131 KIDANNVIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSP 175
+ N + T + L +Y EV+A T G G S
Sbjct: 60 --SSQNNVQVLNTNKTSAELVLPIKEDYIIEVKATTDGGDGTSSE 102
Score = 70.6 bits (173), Expect = 4e-15
Identities = 24/150 (16%), Positives = 48/150 (32%), Gaps = 36/150 (24%)
Query: 169 GPGPWSPKLSLMTARDMVRAPLGVKALATSDQSVEVWWKPVPAG--RGKILGYQIFYTMT 226
G S +++ T + P G +D V + W+ V A ++ GY++FY +
Sbjct: 1 GSSGSSGTVNVTTKKTPPSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTS 60
Query: 227 AVEDLDEWSQKSIPLTESSNIARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYA 286
+ + + + +++ L +Y
Sbjct: 61 ----------------------------------SQNNVQVLNTNKTSAELVLPIKEDYI 86
Query: 287 VAVAARTVNGLGRLSGKVTVKVKPEDVPLS 316
+ V A T G G S ++ + P S
Sbjct: 87 IEVKATTDGGDGTSSEQIRIPRITSSGPSS 116
Score = 52.1 bits (125), Expect = 9e-09
Identities = 18/85 (21%), Positives = 29/85 (34%), Gaps = 6/85 (7%)
Query: 9 TIELVWSQP--TQTYGEILGYRVKYGVREHTLKENLVNSKNMSFLITNLERGVEYEFRIA 66
+ L W Q + E+ GY+V Y R + V + N + L +Y +
Sbjct: 33 KVLLNWEQVKAMENESEVTGYKVFY--RTSSQNNVQVLNTNKTSAELVLPIKEDYIIEVK 90
Query: 67 GQNHIGYGQ--ETVRYYTTPEGPPT 89
G G E +R P+
Sbjct: 91 ATTDGGDGTSSEQIRIPRITSSGPS 115
Score = 28.7 bits (64), Expect = 1.4
Identities = 15/87 (17%), Positives = 23/87 (26%), Gaps = 22/87 (25%)
Query: 296 GLGRLSGKVTVKVKPEDVPLS---LRAHDVSTHSMTLSWSPPIKLNP--------VKYKE 344
G SG V V K + P + + + L+W + V Y+
Sbjct: 1 GSSGSSGTVNVTTK-KTPPSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKVFYRT 59
Query: 345 VSEKIQ----------ERRLQKYGQYR 361
S+ E L Y
Sbjct: 60 SSQNNVQVLNTNKTSAELVLPIKEDYI 86
>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R,
cytokine, glycoprotein, IM response, membrane,
phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens}
PDB: 3bpn_C*
Length = 314
Score = 81.1 bits (199), Expect = 3e-17
Identities = 40/301 (13%), Positives = 87/301 (28%), Gaps = 29/301 (9%)
Query: 9 TIELVWSQPTQTYGE-ILGYRVKYGVREHTLKENLVNSKNMSFLITNLERGVEYEFRIAG 67
T+ W+ P L Y +G ++ + + L + +
Sbjct: 19 TVIWTWNPPEGASSNCSLWYFSHFGDKQDKKIAP----ETRRSIEVPLNERICLQVGSQC 74
Query: 68 QNHIGYGQ--ETVRYYTTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVL-Y 124
+ + + PEG P + + + +W P T + L Y
Sbjct: 75 STNESEKPSILVEKCISPPEGDPESAVTELQCIWHNLSYMKCSWLPGRNTSPDTNYTLYY 134
Query: 125 NVKFHKKIDANNVIHRNTTQTKAVF--SNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTA 182
+ +KI I R F + +++ VQ + K G P +++
Sbjct: 135 WHRSLEKIHQCENIFREGQYFGCSFDLTKVKDSSFEQHSVQIMVKDNAGKIKPSFNIVPL 194
Query: 183 RDMVR-APLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPL 241
V+ P +K L+ + + V W+ + L Y++ + + +
Sbjct: 195 TSRVKPDPPHIKNLSFHNDDLYVQWENPQNFISRCLFYEVEVNN---SQTETHNVFYVQE 251
Query: 242 TESSNIARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLS 301
+ N +++V T + + T V + +T
Sbjct: 252 AKCEN---------------PEFERNVENTSCFMVPGVLPDTLNTVRIRVKTNKLCYEDD 296
Query: 302 G 302
Sbjct: 297 K 297
Score = 72.6 bits (177), Expect = 2e-14
Identities = 40/271 (14%), Positives = 72/271 (26%), Gaps = 43/271 (15%)
Query: 88 PTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANNVIHRNTTQTKA 147
P N+S + V TW+PP N + Y F K + T+
Sbjct: 3 TQPPVTNLSVSVENLCTVIWTWNPPEGASSNCSLW-YFSHFGDK---QDKKIAPETRRSI 58
Query: 148 VFSNLEEGIEYSAEVQAITKAG--PGPWSPKLSLMTARDMVRAPLGVKALATSDQSVEVW 205
L E I Q T P K D A ++ + + ++
Sbjct: 59 EV-PLNERICLQVGSQCSTNESEKPSILVEKCISPPEGDPESAVTELQCIWHNLSYMKCS 117
Query: 206 WKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNIARIFYTMTAVEDLDEWSQ 265
W P Y ++Y ++E + + E F
Sbjct: 118 WLPGRNT-SPDTNYTLYYWHRSLEKIHQCENIF---REGQYFGCSF-------------- 159
Query: 266 KSVPLTESAELTSLEKFTEYAVAVAARTVNGLGR---LSGKVTVKVKPEDVPLSLRAHDV 322
F +++V + + G + +T +VKP+ P ++
Sbjct: 160 -------DLTKVKDSSFEQHSVQIMVKDNAGKIKPSFNIVPLTSRVKPD--PPHIKNLSF 210
Query: 323 STHSMTLSWSPPIKLNP------VKYKEVSE 347
+ + W P V+
Sbjct: 211 HNDDLYVQWENPQNFISRCLFYEVEVNNSQT 241
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding
homology region (CHR), cell MEMB disease mutation,
glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo
sapiens}
Length = 483
Score = 81.8 bits (201), Expect = 5e-17
Identities = 28/186 (15%), Positives = 50/186 (26%), Gaps = 16/186 (8%)
Query: 9 TIELVWSQPTQTY---GEILGYRVKY---GVREHTLKENLVNSKNMSFLITNLERGVEYE 62
I W+ T Y + G + +++ L L Y
Sbjct: 297 EIICSWNPGRVTALVGPRATSYTLVESFSGKYVRLKRAEAPTNESYQLLFQMLPNQEIYN 356
Query: 63 FRIAGQNHIGYGQETVRYYTTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIV 122
F + N +G Q T+ T + P P + V ++W P +
Sbjct: 357 FTLNAHNPLGRSQSTILVNITEKVYP-HTPTSFKVKDINSTAVKLSWHLP--GNFAKINF 413
Query: 123 LYNVKFHKKIDAN-----NVIHRNTTQTKAVFSNLEEGIEYSAEVQAIT--KAGPGPWSP 175
L ++ K + + L Y+ ++ T WS
Sbjct: 414 LCEIEIKKSNSVQEQRNVTIQGVENSSYLVALDKLNPYTLYTFRIRCSTETFWKWSKWSN 473
Query: 176 KLSLMT 181
K +T
Sbjct: 474 KKQHLT 479
Score = 79.1 bits (194), Expect = 4e-16
Identities = 34/259 (13%), Positives = 71/259 (27%), Gaps = 37/259 (14%)
Query: 44 NSKNMSFLITNLERGVEYEFRIAGQNHIGYGQETVRYYTTPEGPPTGPPANISHHFQTPD 103
+ +N++ I N+ G N + ++ + G P P ++
Sbjct: 242 DGENVAIKIRNISVSASS-----GTNVVFTTEDNIFGTVIFAGYPPDTPQQLNCETHDLK 296
Query: 104 VVCITWDPPLRTHRNG-QIVLYNVKF---HKKIDANNVIHRNTTQTKAVFSNLEEGIEYS 159
+ +W+P T G + Y + K + + +F L Y+
Sbjct: 297 EIICSWNPGRVTALVGPRATSYTLVESFSGKYVRLKRAEAPTNESYQLLFQMLPNQEIYN 356
Query: 160 AEVQAITKAGPGPWSPKLSLMTARDMVRAPLGVKALATSDQSVEVWWKPVPAGRGKILGY 219
+ A G + +++ T + P K + +V++ W
Sbjct: 357 FTLNAHNPLGRSQSTILVNI-TEKVYPHTPTSFKVKDINSTAVKLSWHLPGNFAKINFLC 415
Query: 220 QIFYTMTAVEDLDEWSQKSIPLTESSNIARIFYTMTAVEDLDEWSQKSVPLTESAELTSL 279
+I + E +I E+S + L L
Sbjct: 416 EIEI--KKSNSVQEQRNVTIQGVENS-------------------------SYLVALDKL 448
Query: 280 EKFTEYAVAVAARTVNGLG 298
+T Y + T
Sbjct: 449 NPYTLYTFRIRCSTETFWK 467
Score = 55.2 bits (132), Expect = 2e-08
Identities = 40/352 (11%), Positives = 83/352 (23%), Gaps = 55/352 (15%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYGVREHTLKENLVNSKNMSFLITNLERGVEYEFRIAGQ 68
T+ L W+ + + V KE++ K ++ T + + + A
Sbjct: 101 TLYLKWNDRGSVFPHRSNVIWEIKVLR---KESMELVKLVTHQTTLNGKDTLHHWSWASD 157
Query: 69 NHIGYGQETVRYYTTPEGPPTGPPANISHH-----FQTPDVVCITWDPPLRTHRNG---- 119
+ V + S P + G
Sbjct: 158 MPLECAIHFVEIRCYIDNLHFSGLEEWSDWSPVKQISWIPDSQTKVFPQDKVILVGSDIT 217
Query: 120 ---QIVLYNVKFHKKIDANNVIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPK 176
+ +IH + N+ V T+
Sbjct: 218 FCCVSQEKVLSALIGHTNCPLIHLDGENVAIKIRNISVSASSGTNVVFTTEDNIFG---- 273
Query: 177 LSLMTARDMVRAPLGVKALATSDQSVEVWWKPVPAGR---GKILGYQIFYTMTAVEDLDE 233
+++ A P + + + W P + Y + +
Sbjct: 274 -TVIFAGYPPDTPQQLNCETHDLKEIICSWNPGRVTALVGPRATSYTLVES---FSGKYV 329
Query: 234 WSQKSIPLTESSNIARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAART 293
+++ T S L Y + A
Sbjct: 330 RLKRAEAPTNESY--------------------------QLLFQMLPNQEIYNFTLNAHN 363
Query: 294 VNGLGRLSGKVTV--KVKPEDVPLSLRAHDVSTHSMTLSWSPPIKLNPVKYK 343
G + + V + KV P P S + D+++ ++ LSW P + +
Sbjct: 364 PLGRSQSTILVNITEKVYP-HTPTSFKVKDINSTAVKLSWHLPGNFAKINFL 414
Score = 44.4 bits (104), Expect = 4e-05
Identities = 42/322 (13%), Positives = 77/322 (23%), Gaps = 33/322 (10%)
Query: 14 WSQPTQTYGEILGYRVKYGVREHTLKENLVNSKNMSFLITNLERGVEYEFRIAGQNHIGY 73
W P+ T G Y V + + S I L G +YE I + G
Sbjct: 16 WKAPSGT-----GRGTDYEVCIEQRSRSCYQLEKTSIKIPALSHG-DYEITINSLHDFGS 69
Query: 74 GQETVRYYTTPEGPPTGPPANISHHFQTP-DVVCITWDPPLRTHRNGQIVLYNVKFHKKI 132
P + + + W+ + V++ +K +K
Sbjct: 70 STSKFTLNEQNVSLIPDTPEILQLSADFSTSTLYLKWNDRGSVFPHRSNVIWEIKVLRK- 128
Query: 133 DANNVIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTARDMVRAPLGV 192
++ ++ T + + W+ + L A V +
Sbjct: 129 ESMELVKLVT---------------HQTTLNGKDTLHHWSWASDMPLECAIHFVEIRCYI 173
Query: 193 KALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNIARIFY 252
L S W PV + K I + +
Sbjct: 174 DNLHFSGLEEWSDWSPVKQISWIPDSQTKVF----------PQDKVILVGSDITFCCVSQ 223
Query: 253 TMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLSGKVTVKVKPED 312
+ + + L + + A + + G V P D
Sbjct: 224 EKVLSALIGHTNCPLIHLDGENVAIKIRNISVSASSGTNVVFTTEDNIFGTVIFAGYPPD 283
Query: 313 VPLSLRAHDVSTHSMTLSWSPP 334
P L + SW+P
Sbjct: 284 TPQQLNCETHDLKEIICSWNPG 305
>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 119
Score = 74.4 bits (183), Expect = 2e-16
Identities = 28/148 (18%), Positives = 44/148 (29%), Gaps = 30/148 (20%)
Query: 169 GPGPWSPKLSLMTARDMVRAPLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAV 228
G S + T D+ + D S++V W+ G + GY+I +
Sbjct: 1 GSSGSSGPQLVRTHEDVPGPVGHLSFSEILDTSLKVSWQEPGEKNGILTGYRISW--EEY 58
Query: 229 EDLDEWSQKSIPLTESSNIARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVA 288
+ +P +T +T L T Y +
Sbjct: 59 NRTNTRVTHYLP----------------------------NVTLEYRVTGLTALTTYTIE 90
Query: 289 VAARTVNGLGRLSGKVTVKVKPEDVPLS 316
VAA T G G++S P P S
Sbjct: 91 VAAMTSKGQGQVSASTISSGVPPSGPSS 118
Score = 74.0 bits (182), Expect = 2e-16
Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 5/96 (5%)
Query: 82 TTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKK--IDANNVIH 139
T E P GP ++S + ++W P +NG + Y + + + + +
Sbjct: 12 RTHEDVP-GPVGHLSFSEILDTSLKVSWQEPG--EKNGILTGYRISWEEYNRTNTRVTHY 68
Query: 140 RNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSP 175
+ + L Y+ EV A+T G G S
Sbjct: 69 LPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSA 104
Score = 68.2 bits (167), Expect = 2e-14
Identities = 19/88 (21%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYGV--REHTLKENLVNSKNMSFLITNLERGVEYEFRIA 66
++++ W +P + G + GYR+ + R +T + + + + + +T L Y +A
Sbjct: 33 SLKVSWQEPGEKNGILTGYRISWEEYNRTNTRVTHYLPNVTLEYRVTGLTALTTYTIEVA 92
Query: 67 GQNHIGYGQETVRYYTTPEGPPTGPPAN 94
G GQ + T G P P++
Sbjct: 93 AMTSKGQGQVSAS--TISSGVPPSGPSS 118
Score = 38.2 bits (89), Expect = 7e-04
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 10/62 (16%)
Query: 296 GLGRLSGKVTVKVKPEDVP---LSLRAHDVSTHSMTLSWSPPIKLN------PVKYKEVS 346
G SG V+ EDVP L ++ S+ +SW P + N + ++E +
Sbjct: 1 GSSGSSGPQLVRT-HEDVPGPVGHLSFSEILDTSLKVSWQEPGEKNGILTGYRISWEEYN 59
Query: 347 EK 348
Sbjct: 60 RT 61
>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes
(CDON)binding...; fibronectin type III, FN3; NMR {Mus
musculus} SCOP: b.1.2.1
Length = 114
Score = 73.3 bits (180), Expect = 3e-16
Identities = 18/131 (13%), Positives = 39/131 (29%), Gaps = 30/131 (22%)
Query: 188 APLGVKALATSDQSVEVWWKPVPA--GRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESS 245
P A ++ ++ + W +PA I G+ I+Y T ++ ++ + +
Sbjct: 11 GPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDRY- 69
Query: 246 NIARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLSGKVT 305
++ L+ T Y + + G S +
Sbjct: 70 ---------------------------WHSISHLQPETSYDIKMQCFNEGGESEFSNVMI 102
Query: 306 VKVKPEDVPLS 316
+ K P S
Sbjct: 103 CETKARSGPSS 113
Score = 72.1 bits (177), Expect = 8e-16
Identities = 13/104 (12%), Positives = 31/104 (29%), Gaps = 4/104 (3%)
Query: 82 TTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANN----V 137
++ P P + + W ++ N I + + + N+
Sbjct: 2 SSGSSGPVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKK 61
Query: 138 IHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMT 181
+ S+L+ Y ++Q + G +S + T
Sbjct: 62 DMVEGDRYWHSISHLQPETSYDIKMQCFNEGGESEFSNVMICET 105
Score = 52.9 bits (127), Expect = 5e-09
Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 8/89 (8%)
Query: 9 TIELVWSQPTQTY--GEILGYRVKY----GVREHTLKENLVNSKNMSFLITNLERGVEYE 62
TI L W + I G+ + Y + K+++V I++L+ Y+
Sbjct: 24 TIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDRYWHSISHLQPETSYD 83
Query: 63 FRIAGQNHIGYGQ--ETVRYYTTPEGPPT 89
++ N G + + T P+
Sbjct: 84 IKMQCFNEGGESEFSNVMICETKARSGPS 112
>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 114
Score = 72.8 bits (179), Expect = 5e-16
Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 8/109 (7%)
Query: 82 TTPEGPPTGPPANISHHFQ--TPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDAN---- 135
++ PT P +++ + P V ++W PPL NG+I Y + + +
Sbjct: 2 SSGSSGPTSAPKDLTVITREGKPRAVIVSWQPPL--EANGKITAYILFYTLDKNIPIDDW 59
Query: 136 NVIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTARD 184
+ + + +L Y +QA G GP S + T +
Sbjct: 60 IMETISGDRLTHQIMDLNLDTMYYFRIQARNSKGVGPLSDPILFRTLKV 108
Score = 66.3 bits (162), Expect = 1e-13
Identities = 29/131 (22%), Positives = 45/131 (34%), Gaps = 30/131 (22%)
Query: 188 AP--LGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESS 245
AP L V ++V V W+P GKI Y +FYT+ +D+W ++I
Sbjct: 11 APKDLTVITREGKPRAVIVSWQPPLEANGKITAYILFYTLDKNIPIDDWIMETISGD--- 67
Query: 246 NIARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLSGKVT 305
+ ++ L T Y + AR G+G LS +
Sbjct: 68 -------------------------RLTHQIMDLNLDTMYYFRIQARNSKGVGPLSDPIL 102
Query: 306 VKVKPEDVPLS 316
+ P S
Sbjct: 103 FRTLKVSGPSS 113
Score = 65.5 bits (160), Expect = 2e-13
Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 6/88 (6%)
Query: 9 TIELVWSQPTQTYGEILGYRVKY----GVREHTLKENLVNSKNMSFLITNLERGVEYEFR 64
+ + W P + G+I Y + Y + ++ ++ I +L Y FR
Sbjct: 26 AVIVSWQPPLEANGKITAYILFYTLDKNIPIDDWIMETISGDRLTHQIMDLNLDTMYYFR 85
Query: 65 IAGQNHIGYGQ--ETVRYYTTPEGPPTG 90
I +N G G + + + T P+
Sbjct: 86 IQARNSKGVGPLSDPILFRTLKVSGPSS 113
Score = 28.9 bits (65), Expect = 1.3
Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 6/35 (17%)
Query: 310 PEDVP------LSLRAHDVSTHSMTLSWSPPIKLN 338
P L++ + ++ +SW PP++ N
Sbjct: 4 GSSGPTSAPKDLTVITREGKPRAVIVSWQPPLEAN 38
>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine
6 R beta subunit, signaling protein; 2.00A {Homo
sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A
Length = 215
Score = 75.0 bits (184), Expect = 9e-16
Identities = 26/175 (14%), Positives = 62/175 (35%), Gaps = 11/175 (6%)
Query: 9 TIELVWSQPTQTYGEILGYRVKY--GVREHTLKENLVNSKNMSFLITNLERGVEYEFRIA 66
+ W +T + +K + + ++ + + V E +
Sbjct: 23 KMRCEWDGGRET-HLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVE 81
Query: 67 GQNHIGYGQETVRYYTTPEGPPTGPPANISHHF--QTPDVVCITWDPPLRTHRNGQIVLY 124
+N +G + PP N+S + ++ +TW P + ++ I+ Y
Sbjct: 82 AENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNP--SIKSVIILKY 139
Query: 125 NVKFHKKIDAN----NVIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSP 175
N+++ K + +T++ +L+ EY ++ + + G G WS
Sbjct: 140 NIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSD 194
Score = 66.2 bits (161), Expect = 1e-12
Identities = 42/237 (17%), Positives = 68/237 (28%), Gaps = 35/237 (14%)
Query: 83 TPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANNVIHRNT 142
G P P N+S + WD TH L ++ A+ R+T
Sbjct: 2 GSSGLPPEKPKNLSCIVNEGKKMRCEWDGGRETHLETNFTLK-SEWATHKFADCKAKRDT 60
Query: 143 TQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTARDMVRAPLGVKALATSDQ-- 200
+ V + + V+A G + P + + + +
Sbjct: 61 PTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSS 120
Query: 201 SVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNIARIFYTMTAVEDL 260
+++ W IL Y I Y +D WSQ T S+
Sbjct: 121 ILKLTWTNPSIKSVIILKYNIQYR---TKDASTWSQIPPEDTAST--------------- 162
Query: 261 DEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLS---GKVTVKVKPEDVP 314
S + L+ FTEY + +G G S + + ED P
Sbjct: 163 ----------RSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGIT-YEDRP 208
Score = 59.2 bits (143), Expect = 2e-10
Identities = 25/99 (25%), Positives = 38/99 (38%), Gaps = 10/99 (10%)
Query: 3 KEEPEVTIELVWSQPTQTYGEILGYRVKYGVREH----TLKENLVNSKNMSFLITNLERG 58
EE ++L W+ P+ IL Y ++Y ++ + S SF + +L+
Sbjct: 115 SEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPF 174
Query: 59 VEYEFRIAGQNHIGYGQ-----ETVRYYTTPEGPPTGPP 92
EY FRI G G E T E P+ P
Sbjct: 175 TEYVFRIRCMKEDGKGYWSDWSEEA-SGITYEDRPSKEP 212
Score = 31.5 bits (71), Expect = 0.35
Identities = 18/115 (15%), Positives = 38/115 (33%), Gaps = 17/115 (14%)
Query: 252 YTMTAVEDLDEWSQKSVPLTESAELT---SLEKFTEYAVAVAARTVNGLGRL-SGKVTVK 307
+T+ + +++ T S F V V A N LG++ S +
Sbjct: 40 FTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEA--ENALGKVTSDHINFD 97
Query: 308 VKPEDVP-----LSLRAHDVSTHSMTLSWSPPIKLNP------VKYKEVSEKIQE 351
+ P LS+ + + + L+W+ P + ++Y+
Sbjct: 98 PVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWS 152
Score = 29.6 bits (66), Expect = 1.4
Identities = 10/85 (11%), Positives = 23/85 (27%), Gaps = 5/85 (5%)
Query: 310 PEDVPLSLRAHDVSTHSMTLSWSPPIKLNP-----VKYKEVSEKIQERRLQKYGQYRYFE 364
P + P +L M W + + +K + + K + + ++
Sbjct: 7 PPEKPKNLSCIVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTV 66
Query: 365 TRDESYIGKRVERMEVRGRKGRGRP 389
Y +E G+
Sbjct: 67 DYSTVYFVNIEVWVEAENALGKVTS 91
>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 113
Score = 71.8 bits (176), Expect = 1e-15
Identities = 20/103 (19%), Positives = 33/103 (32%), Gaps = 3/103 (2%)
Query: 82 TTPEGPPTGPPANISHHFQTPDVVCITWDPPL--RTHRNGQIVLYNVKFHKKIDAN-NVI 138
++ P PP + + D + ITW + + Y V++ I AN
Sbjct: 2 SSGSSGPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYK 61
Query: 139 HRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMT 181
+ N T + + L+ Y V WS T
Sbjct: 62 NANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTT 104
Score = 51.0 bits (122), Expect = 2e-08
Identities = 18/128 (14%), Positives = 33/128 (25%), Gaps = 30/128 (23%)
Query: 188 APLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNI 247
P+GV+A S ++ + W + + + +YT
Sbjct: 11 PPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYT----------------------- 47
Query: 248 ARIFYTMTAVEDLDEWSQKSVPLTE-SAELTSLEKFTEYAVAVAARTVNGLGRLSGKVTV 306
+ + K+ T S +T L+ T Y +V S
Sbjct: 48 --VRWKT---NIPANTKYKNANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHG 102
Query: 307 KVKPEDVP 314
E
Sbjct: 103 TT-FELSG 109
Score = 51.0 bits (122), Expect = 2e-08
Identities = 18/88 (20%), Positives = 30/88 (34%), Gaps = 7/88 (7%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYGVR-----EHTLKENLVNSKNMSFLITNLERGVEYEF 63
TI + W+ + + + Y VR K N+ +S+L+T L+ YEF
Sbjct: 24 TIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTLSYLVTGLKPNTLYEF 83
Query: 64 RIAGQNHIGYGQ--ETVRYYTTPEGPPT 89
+ T T P+
Sbjct: 84 SVMVTKGRRSSTWSMTAHGTTFELSGPS 111
Score = 31.7 bits (72), Expect = 0.15
Identities = 5/26 (19%), Positives = 14/26 (53%)
Query: 309 KPEDVPLSLRAHDVSTHSMTLSWSPP 334
P P+ ++A +S ++ ++W+
Sbjct: 7 GPMMPPVGVQASILSHDTIRITWADN 32
>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor
complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 b.1.2.1 PDB: 1p9m_A
Length = 303
Score = 76.0 bits (186), Expect = 1e-15
Identities = 28/175 (16%), Positives = 64/175 (36%), Gaps = 11/175 (6%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYGVREHTLKE--NLVNSKNMSFLITNLERGVEYEFRIA 66
+ W +T+ E + +K H + ++ + + V E +
Sbjct: 119 KMRCEWDGGRETHLET-NFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVE 177
Query: 67 GQNHIGYGQETVRYYTTPEGPPTGPPANISHHF--QTPDVVCITWDPPLRTHRNGQIVLY 124
+N +G + PP N+S + ++ +TW P + ++ I+ Y
Sbjct: 178 AENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNP--SIKSVIILKY 235
Query: 125 NVKFHKKIDAN----NVIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSP 175
N+++ K + +T++ +L+ EY ++ + + G G WS
Sbjct: 236 NIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSD 290
Score = 69.1 bits (168), Expect = 3e-13
Identities = 46/300 (15%), Positives = 83/300 (27%), Gaps = 38/300 (12%)
Query: 8 VTIELVWSQPTQTYGEILGYRVKY---GVREHTLKENLVNSKNMSFLITNLERG-VEYEF 63
T V + Y + + + + ++N S T++ ++
Sbjct: 22 FTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTDIASLNIQLTC 81
Query: 64 RIAGQNHIGYGQETVRYYTTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVL 123
I + + G P P N+S + WD TH L
Sbjct: 82 NILTFGQLEQNVYGITII---SGLPPEKPKNLSCIVNEGKKMRCEWDGGRETHLETNFTL 138
Query: 124 YNVKFHKKIDANNVIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTAR 183
++ A+ R+T + V + + V+A G +
Sbjct: 139 K-SEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYK 197
Query: 184 DMVRAPLGVKALATSDQ--SVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPL 241
P + + + + +++ W IL Y I Y +D WSQ
Sbjct: 198 VKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRT---KDASTWSQIPPED 254
Query: 242 TESSNIARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLS 301
T S+ S + L+ FTEY + +G G S
Sbjct: 255 TAST-------------------------RSSFTVQDLKPFTEYVFRIRCMKEDGKGYWS 289
Score = 31.7 bits (71), Expect = 0.36
Identities = 20/104 (19%), Positives = 35/104 (33%), Gaps = 16/104 (15%)
Query: 262 EWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLSG-----KVTVKVKPEDVPLS 316
+ K T S F V V A N LG+++ KVKP + P +
Sbjct: 149 DCKAKRDTPTSCTVDYSTVYFVNIEVWVEA--ENALGKVTSDHINFDPVYKVKP-NPPHN 205
Query: 317 LRAHDVST--HSMTLSWSPPIKLNP------VKYKEVSEKIQER 352
L + + L+W+ P + ++Y+ +
Sbjct: 206 LSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQ 249
>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 126
Score = 72.1 bits (177), Expect = 1e-15
Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYGVREHTLKENLVNSKNMSFLITNLERGVEYEFRIAGQ 68
+I + W+ P + GY + YG+ + V+ K + I NL+ Y +
Sbjct: 42 SIVVSWTPPENQNIVVRGYAIGYGIGSPHAQTIKVDYKQRYYTIENLDPSSHYVITLKAF 101
Query: 69 NHIGYGQ---ETVRYYTTPEGPPTG 90
N++G G E+ GP +G
Sbjct: 102 NNVGEGIPLYESAVTRPHTSGPSSG 126
Score = 64.4 bits (157), Expect = 6e-13
Identities = 22/156 (14%), Positives = 37/156 (23%), Gaps = 41/156 (26%)
Query: 166 TKAGPGPWSPKLSLMTARDMVR------APLGVKALATSDQSVEVWWKPVPAGRGKILGY 219
+ GP + LS T + P + S+ V W P + GY
Sbjct: 2 SSGSSGPATDWLSAETFESDLDETRVPEVPSSLHVRPLVT-SIVVSWTPPENQNIVVRGY 60
Query: 220 QIFYTMTAVEDLDEWSQKSIPLTESSNIARIFYTMTAVEDLDEWSQKSVPLTESAELTSL 279
I Y + + K + +L
Sbjct: 61 AIGYG--------------------------------IGSPHAQTIKVDYKQRYYTIENL 88
Query: 280 EKFTEYAVAVAARTVNGLGR-LSGKVTVKVKPEDVP 314
+ + Y + + A G G L + P
Sbjct: 89 DPSSHYVITLKAFNNVGEGIPLYESAVTRPH-TSGP 123
Score = 63.6 bits (155), Expect = 1e-12
Identities = 19/123 (15%), Positives = 35/123 (28%), Gaps = 10/123 (8%)
Query: 69 NHIGYGQET-VRYYTTPEGPPT-----GPPANISHHFQTPDVVCITWDPPLRTHRNGQIV 122
+ G T T E P+++ + ++W PP ++N +
Sbjct: 2 SSGSSGPATDWLSAETFESDLDETRVPEVPSSLHVR-PLVTSIVVSWTPP--ENQNIVVR 58
Query: 123 LYNVKFHKKIDANNVIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPG-PWSPKLSLMT 181
Y + + I + Q NL+ Y ++A G G P
Sbjct: 59 GYAIGYGIGSPHAQTIKVDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYESAVTRP 118
Query: 182 ARD 184
Sbjct: 119 HTS 121
Score = 32.8 bits (75), Expect = 0.059
Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 15/76 (19%)
Query: 293 TVNGLGRLSGKVTVK--------VKPEDVPLSLRAHDVSTHSMTLSWSPPIKLNP----- 339
+ G + ++ + + +VP SL + T S+ +SW+PP N
Sbjct: 2 SSGSSGPATDWLSAETFESDLDETRVPEVPSSLHVRPLVT-SIVVSWTPPENQNIVVRGY 60
Query: 340 -VKYKEVSEKIQERRL 354
+ Y S Q ++
Sbjct: 61 AIGYGIGSPHAQTIKV 76
>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling
complex, extracellular space, IM system receptor; HET:
NAG; 3.50A {Homo sapiens} PDB: 3se3_A*
Length = 414
Score = 76.2 bits (186), Expect = 2e-15
Identities = 54/314 (17%), Positives = 86/314 (27%), Gaps = 51/314 (16%)
Query: 14 WSQPTQTYGEILGYRVKYGVREHTLKENLVNSKNMSFLITNLERGVEYEFRIAGQNHIGY 73
S G Y + ++E + + I L Y ++ +
Sbjct: 130 DSVMWALDGLSFTYSLVIWKNSSGVEER-IENIYSRHKIYKLSPETTYCLKVKAALLTSW 188
Query: 74 GQ---ETVRYYTTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHK 130
V T PP NI Q + V + WD V + F K
Sbjct: 189 KIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYV-LKWDYT--YANMTFQVQWLHAFLK 245
Query: 131 KIDANNVIH-------RNTTQTKAVFS-NLEEGIEYSAEVQAITKAGPGPWSPKLSLMTA 182
+ N++ N T+ VF N+ + Y VQA WS ++ T
Sbjct: 246 RNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDTE 305
Query: 183 RDMVRAPLGVKALATSDQSVEVWWKPVPAGRGKIL--GYQIFYTMTAVEDLDEWSQKSIP 240
P + SD S ++ + Y + Y
Sbjct: 306 IQAFLLPPVFNIRSLSD-SFHIYIGAPKQSGNTPVIQDYPLIY----------------- 347
Query: 241 LTESSNIARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAART----VNG 296
I + E+ +K + + +L+ T Y V A T +N
Sbjct: 348 --------EIIFW----ENTSNAERKIIEKKTDVTVPNLKPLTVYCVKARAHTMDEKLNK 395
Query: 297 LGRLSGKVTVKVKP 310
S V K KP
Sbjct: 396 SSVFSDAVCEKTKP 409
Score = 61.6 bits (148), Expect = 2e-10
Identities = 42/335 (12%), Positives = 91/335 (27%), Gaps = 40/335 (11%)
Query: 12 LVWSQPTQTYGEILGYRVKY---GVREHTLKENLVNSKNMSFLIT--NLERGVEYEFRIA 66
L W++ ++ G + + Y G+ N + + L E + RI
Sbjct: 25 LRWNRSDESVGNVT-FSFDYQKTGMDNWIKLSGCQNITSTKCNFSSLKLNVYEEIKLRIR 83
Query: 67 GQNHIGYGQETVRYYTTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNV 126
+ V +T GPP H + I P + + +
Sbjct: 84 AEKENTSSWYEVDSFTPFRKAQIGPPE--VHLEAEDKAIVIHISPGTKDSVMWALDGLSF 141
Query: 127 KFH---KKIDANNVIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAG--PGPWSPKLSLMT 181
+ K + ++ L Y +V+A G +SP + T
Sbjct: 142 TYSLVIWKNSSGVEERIENIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKT 201
Query: 182 ARDMVRAPLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPL 241
+ P ++ +Q+ + W A + + + + K +
Sbjct: 202 TVENELPPPENIEVSVQNQNYVLKWDYTYANMTFQVQWLHAFL---KRNPGNHLYKWKQI 258
Query: 242 TESSNIARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLS 301
+ N+ T+ ++ + Y + V A N S
Sbjct: 259 PDCENVKT---------------------TQCVFPQNVFQKGIYLLRVQASDGNNTSFWS 297
Query: 302 GKVTVKVKPEDVPLSLRAHDVS--THSMTLSWSPP 334
++ + L ++ + S + P
Sbjct: 298 EEIKFDTE-IQAFLLPPVFNIRSLSDSFHIYIGAP 331
Score = 38.1 bits (87), Expect = 0.005
Identities = 11/92 (11%), Positives = 23/92 (25%), Gaps = 12/92 (13%)
Query: 9 TIELVWSQPTQ------TYGEILGYRVKYGVREHTLKENLVNSKNMSFLITNLERGVEYE 62
+ + P Q L Y + + + E + K + NL+ Y
Sbjct: 323 SFHIYIGAPKQSGNTPVIQDYPLIYEIIFW-ENTSNAERKIIEKKTDVTVPNLKPLTVYC 381
Query: 63 FRIAGQNHIGYGQET-----VRYYTTPEGPPT 89
+ ++ T G +
Sbjct: 382 VKARAHTMDEKLNKSSVFSDAVCEKTKPGNTS 413
>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 116
Score = 70.2 bits (172), Expect = 5e-15
Identities = 22/86 (25%), Positives = 33/86 (38%), Gaps = 2/86 (2%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYGVREHTLKENLVNSKNMSFLITNLERGVEYEFRIAGQ 68
I + W+ P + GY + YGV + V+SK + I LE Y +
Sbjct: 32 CIIMSWTPPLNPNIVVRGYIIGYGVGSPYAETVRVDSKQRYYSIERLESSSHYVISLKAF 91
Query: 69 NHIGYGQETVRYYTTPEGPPTGPPAN 94
N+ G G TT T P++
Sbjct: 92 NNAGEGVPLYESATT--RSITSGPSS 115
Score = 63.2 bits (154), Expect = 1e-12
Identities = 19/108 (17%), Positives = 36/108 (33%), Gaps = 6/108 (5%)
Query: 82 TTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANNVIHRN 141
P P+++ + + ++W PP + N + Y + + + +
Sbjct: 12 LDESQVP-DQPSSLHVR-PQTNCIIMSWTPP--LNPNIVVRGYIIGYGVGSPYAETVRVD 67
Query: 142 TTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTARDMVRAP 189
+ Q LE Y ++A AG G P T R + P
Sbjct: 68 SKQRYYSIERLESSSHYVISLKAFNNAGEGV--PLYESATTRSITSGP 113
Score = 60.5 bits (147), Expect = 1e-11
Identities = 18/143 (12%), Positives = 35/143 (24%), Gaps = 34/143 (23%)
Query: 169 GPGPWSPKLSLMTARDMVRAPLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAV 228
G S + + + P + ++ + + W P + GY I Y
Sbjct: 1 GSSGSSGPENDLDESQVPDQPSSLHVRPQTN-CIIMSWTPPLNPNIVVRGYIIGYG---- 55
Query: 229 EDLDEWSQKSIPLTESSNIARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVA 288
V + + + LE + Y ++
Sbjct: 56 ----------------------------VGSPYAETVRVDSKQRYYSIERLESSSHYVIS 87
Query: 289 VAARTVNGLGR-LSGKVTVKVKP 310
+ A G G L T +
Sbjct: 88 LKAFNNAGEGVPLYESATTRSIT 110
Score = 35.1 bits (81), Expect = 0.008
Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 11/68 (16%)
Query: 296 GLGRLSGKVTVKVKPEDVP---LSLRAHDVSTHSMTLSWSPPIKLN------PVKYKEVS 346
G SG VP SL + + +SW+PP+ N + Y S
Sbjct: 1 GSSGSSGPENDLD-ESQVPDQPSSLHVRPQTN-CIIMSWTPPLNPNIVVRGYIIGYGVGS 58
Query: 347 EKIQERRL 354
+ R+
Sbjct: 59 PYAETVRV 66
>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 119
Score = 70.1 bits (172), Expect = 6e-15
Identities = 27/148 (18%), Positives = 49/148 (33%), Gaps = 30/148 (20%)
Query: 169 GPGPWSPKLSLMTARDMVRAPLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAV 228
G S K ++ ++ + AP V + S + V + W+P +G I + +F++
Sbjct: 1 GSSGSSGKPAIPSSSVLPSAPRDVVPVLVSSRFVRLSWRPPAEAKGNIQTFTVFFSR--- 57
Query: 229 EDLDEWSQKSIPLTESSNIARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVA 288
E + + P + + +L+ Y
Sbjct: 58 EGDNRER---------------------------ALNTTQPGSLQLTVGNLKPEAMYTFR 90
Query: 289 VAARTVNGLGRLSGKVTVKVKPEDVPLS 316
V A G G S + V +PE P S
Sbjct: 91 VVAYNEWGPGESSQPIKVATQPESGPSS 118
Score = 69.0 bits (169), Expect = 1e-14
Identities = 21/102 (20%), Positives = 37/102 (36%), Gaps = 5/102 (4%)
Query: 82 TTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANN--VIH 139
+ P P ++ + V ++W PP G I + V F ++ D +
Sbjct: 12 PSSSVLP-SAPRDVVPVLVSSRFVRLSWRPP--AEAKGNIQTFTVFFSREGDNRERALNT 68
Query: 140 RNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMT 181
+ NL+ Y+ V A + GPG S + + T
Sbjct: 69 TQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESSQPIKVAT 110
Score = 64.7 bits (158), Expect = 4e-13
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 8/87 (9%)
Query: 9 TIELVWSQPTQTYGEILGYRVKY----GVREHTLKENLVNSKNMSFLITNLERGVEYEFR 64
+ L W P + G I + V + RE L N ++ + NL+ Y FR
Sbjct: 33 FVRLSWRPPAEAKGNIQTFTVFFSREGDNRERAL--NTTQPGSLQLTVGNLKPEAMYTFR 90
Query: 65 IAGQNHIGYGQ--ETVRYYTTPEGPPT 89
+ N G G+ + ++ T PE P+
Sbjct: 91 VVAYNEWGPGESSQPIKVATQPESGPS 117
Score = 37.8 bits (88), Expect = 0.001
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 4/46 (8%)
Query: 296 GLGRLSGKVTVKVKPEDVP---LSLRAHDVSTHSMTLSWSPPIKLN 338
G SGK + +P + VS+ + LSW PP +
Sbjct: 1 GSSGSSGKPAI-PSSSVLPSAPRDVVPVLVSSRFVRLSWRPPAEAK 45
>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites,
calcium, cell adhesion molecules, cell cycle cell LINE,
conserved sequence; 1.60A {Homo sapiens} PDB: 3d1m_C
3n1q_C 3n1m_C 3n1g_C 3n1p_C
Length = 102
Score = 68.9 bits (169), Expect = 8e-15
Identities = 17/124 (13%), Positives = 36/124 (29%), Gaps = 30/124 (24%)
Query: 188 APLGVKALATSDQSVEVWWKPVPAG--RGKILGYQIFYTMTAVEDLDEWSQKSIPLTESS 245
P A SD + + W +P+ I G+ I+Y T ++ ++ + +
Sbjct: 7 GPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVE----- 61
Query: 246 NIARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLSGKVT 305
+ + L+ T Y + + G S +
Sbjct: 62 -----------------------GSKQWHMIGHLQPETSYDIKMQCFNEGGESEFSNVMI 98
Query: 306 VKVK 309
+ K
Sbjct: 99 CETK 102
Score = 67.8 bits (166), Expect = 2e-14
Identities = 12/98 (12%), Positives = 32/98 (32%), Gaps = 4/98 (4%)
Query: 88 PTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANNVIHRNTT---- 143
P P + + + W ++ N I + + + N+ ++
Sbjct: 4 PITGPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVEGS 63
Query: 144 QTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMT 181
+ + +L+ Y ++Q + G +S + T
Sbjct: 64 KQWHMIGHLQPETSYDIKMQCFNEGGESEFSNVMICET 101
Score = 53.1 bits (128), Expect = 3e-09
Identities = 13/72 (18%), Positives = 26/72 (36%), Gaps = 6/72 (8%)
Query: 9 TIELVWSQP--TQTYGEILGYRVKY----GVREHTLKENLVNSKNMSFLITNLERGVEYE 62
I L W+ + I G+ + Y + K ++V +I +L+ Y+
Sbjct: 20 QIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVEGSKQWHMIGHLQPETSYD 79
Query: 63 FRIAGQNHIGYG 74
++ N G
Sbjct: 80 IKMQCFNEGGES 91
Score = 30.4 bits (69), Expect = 0.26
Identities = 6/25 (24%), Positives = 8/25 (32%)
Query: 310 PEDVPLSLRAHDVSTHSMTLSWSPP 334
P P VS + L W+
Sbjct: 4 PITGPHIAYTEAVSDTQIMLKWTYI 28
>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 68.6 bits (168), Expect = 2e-14
Identities = 31/147 (21%), Positives = 48/147 (32%), Gaps = 31/147 (21%)
Query: 169 GPGPWSPKLSLMTARDMVRAPLGVKALATSDQSVEVWWK-PVPAGRGKILGYQIFYTMTA 227
G S + + T + AP V A S + +++ W+ P G L Y +FYT
Sbjct: 1 GSSGSSGEHAPATTGPLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTK-- 58
Query: 228 VEDLDEWSQKSIPLTESSNIARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAV 287
E + S P + +L T Y
Sbjct: 59 -EGIARER---------------------------VENTSHPGEMQVTIQNLMPATVYIF 90
Query: 288 AVAARTVNGLGRLSGKVTVKVKPEDVP 314
V A+ +G G S + V+ +PE P
Sbjct: 91 RVMAQNKHGSGESSAPLRVETQPESGP 117
Score = 66.3 bits (162), Expect = 1e-13
Identities = 23/120 (19%), Positives = 42/120 (35%), Gaps = 3/120 (2%)
Query: 72 GYGQETVRYYTTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKK 131
G + + GP P ++ + + +TW P + +G + Y+V + K+
Sbjct: 1 GSSGSSGEHAPATTGPLPSAPRDVVASLVSTRFIKLTWRTPA-SDPHGDNLTYSVFYTKE 59
Query: 132 IDAN--NVIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTARDMVRAP 189
A + + + NL Y V A K G G S L + T + +
Sbjct: 60 GIARERVENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSAPLRVETQPESGPSS 119
Score = 63.2 bits (154), Expect = 1e-12
Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 9/88 (10%)
Query: 9 TIELVWSQP-TQTYGEILGYRVKY----GVREHTLKENLVNSKNMSFLITNLERGVEYEF 63
I+L W P + +G+ L Y V Y RE N + M I NL Y F
Sbjct: 33 FIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVE--NTSHPGEMQVTIQNLMPATVYIF 90
Query: 64 RIAGQNHIGYGQ--ETVRYYTTPEGPPT 89
R+ QN G G+ +R T PE P+
Sbjct: 91 RVMAQNKHGSGESSAPLRVETQPESGPS 118
Score = 33.5 bits (77), Expect = 0.035
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 4/42 (9%)
Query: 296 GLGRLSGKVTVKVKPEDVP---LSLRAHDVSTHSMTLSWSPP 334
G SG+ +P + A VST + L+W P
Sbjct: 1 GSSGSSGEHAP-ATTGPLPSAPRDVVASLVSTRFIKLTWRTP 41
>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains
of fibronectin-III domains, FOU fibronectin-III domains
PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A*
3cxe_A* 1egj_A* 1c8p_A
Length = 419
Score = 73.5 bits (179), Expect = 2e-14
Identities = 50/389 (12%), Positives = 109/389 (28%), Gaps = 61/389 (15%)
Query: 9 TIELVWSQPTQTYGEI---LGYRVKYGVREHT---LKENLVNSKNMSFLITNLERGVEYE 62
I W+ + L RV + E L +++ S + +
Sbjct: 18 HITCRWADTQDAQRLVNVTLIRRVNEDLLEPVSCDLSDDMPWSACPHPRCVPRRCVIPCQ 77
Query: 63 FRIAGQNHIGYGQETV-----RYYTTPEGPPTGPPANISHHFQTPDVVCITWDPPL---- 113
+ Q T + P ++ D +TW L
Sbjct: 78 SFVVTDVDYFSFQPDRPLGTRLTVTLTQHVQPPEPRDLQIST-DQDHFLLTWSVALGSPQ 136
Query: 114 RTHRNGQIVLYNVKFHKKIDANN---VIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAG- 169
+ + + V + + D+ ++ NT+Q +L Y A V+ G
Sbjct: 137 SHWLSPGDLEFEVVYKRLQDSWEDAAILLSNTSQATLGPEHLMPSSTYVARVRTRLAPGS 196
Query: 170 -----PGPWSPKLSLMTARDMVRAPLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYT 224
P WSP++ + P ++ + W+ + + +FY
Sbjct: 197 RLSGRPSKWSPEVCWDSQPGDEAQPQNLECFFDGAAVLSCSWEV-RKEVASSVSFGLFYK 255
Query: 225 MTA---VEDLDEWSQKSIPLTESSNIARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEK 281
+ L + S L E + +P+ + A
Sbjct: 256 PSPDAGSAVLLREEECSPVLREGLGSLHTRHHCQ------------IPVPDPAT------ 297
Query: 282 FTEYAVAVAARTVNGLGRLSGKVTVKVKPEDVPLSLRAHDVSTHSMTLSWSPPIKLNP-- 339
+Y V+V R + S V +++ P + ++ S +L W
Sbjct: 298 HGQYIVSVQPRRAEKHIKSS--VNIQMAPPSLQVT-----KDGDSYSLRWETMKMRYEHI 350
Query: 340 -----VKYKEVSEKIQERRLQKYGQYRYF 363
++Y++ + ++ + +
Sbjct: 351 DHTFEIQYRKDTATWKDSKTETLQNAHSM 379
Score = 65.8 bits (159), Expect = 6e-12
Identities = 37/310 (11%), Positives = 74/310 (23%), Gaps = 53/310 (17%)
Query: 9 TIELVWSQPTQT------YGEILGYRVKYGVREH---TLKENLVNSKNMSFLITNLERGV 59
L WS + L + V Y + L N+ + +L
Sbjct: 123 HFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQDSWEDAAILLSNTSQATLGPEHLMPSS 182
Query: 60 EYEFRIAGQNHIGYG------QETVRYYTTPEGPPTGPPANISHHFQTPDVVCITWDPPL 113
Y R+ + G + + + P N+ F V+ +W+
Sbjct: 183 TYVARVRTRLAPGSRLSGRPSKWSPEVCWDSQPGDEAQPQNLECFFDGAAVLSCSWEVRK 242
Query: 114 RTHRNGQIVLYNVKFHKKIDANNVIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPW 173
+ L+ K + ++ + ++ A G +
Sbjct: 243 EVASSVSFGLF-YKPSPDAGSAVLLREEECSPVLREGLGSLHTRHHCQIPVPDPATHGQY 301
Query: 174 SPKLSLMTARDMVRAPLGVK-------ALATSDQSVEVWWKPVPAGRGKILGYQIFYTMT 226
+ A +++ + ++ D W ++I Y
Sbjct: 302 IVSVQPRRAEKHIKSSVNIQMAPPSLQVTKDGDSYSLRWETMKMRYEHIDHTFEIQYR-- 359
Query: 227 AVEDLDEWSQKSIPLTESSNIARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYA 286
+D W ++ S L +LE T Y
Sbjct: 360 --KDTATWKDSKTETLQN--------------------------AHSMALPALEPSTRYW 391
Query: 287 VAVAARTVNG 296
V RT
Sbjct: 392 ARVRVRTSRT 401
Score = 38.1 bits (87), Expect = 0.004
Identities = 12/70 (17%), Positives = 21/70 (30%), Gaps = 3/70 (4%)
Query: 9 TIELVWSQPTQTYGEI-LGYRVKYGVREHTLKENLVN--SKNMSFLITNLERGVEYEFRI 65
+ L W Y I + ++Y T K++ S + LE Y R+
Sbjct: 335 SYSLRWETMKMRYEHIDHTFEIQYRKDTATWKDSKTETLQNAHSMALPALEPSTRYWARV 394
Query: 66 AGQNHIGYGQ 75
+
Sbjct: 395 RVRTSRTGYN 404
>3s98_A Interferon alpha/beta receptor 1; human, type I interferons,
receptor chain, ifnar1, fibronect III, type I interferon
receptor chain; HET: NAG; 1.90A {Homo sapiens}
Length = 306
Score = 72.3 bits (176), Expect = 3e-14
Identities = 38/301 (12%), Positives = 78/301 (25%), Gaps = 39/301 (12%)
Query: 12 LVWSQPTQTYGEILGYRVKY---GVREHTLKENLVNSKNMS--FLITNLERGVEYEFRIA 66
L W++ ++ G + + Y G+ N + F L E + RI
Sbjct: 21 LRWNRSDESVGNV-TFSFDYQKTGMDNWIKLSGCQNITSTKCNFSSLKLNVYEEIKLRIR 79
Query: 67 GQNHIGYGQETVRYYTTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHR----NGQIV 122
+ TP P + + I P + +G
Sbjct: 80 AEKE-NTSSWYEVDSFTPFRKAQIGPPEVHLE-AEDKAIVIHISPGTKDSVMWALDGLSF 137
Query: 123 LYNVKFHKKIDANNVIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGP--GPWSPKLSLM 180
Y++ K + ++ L Y +V+A G +SP +
Sbjct: 138 TYSLVIWKN-SSGVEERIENIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIK 196
Query: 181 TARDMVRAPLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIP 240
T + P ++ +Q+ + W A + + + + K
Sbjct: 197 TTVENELPPPENIEVSVQNQNYVLKWDYTYANMTFQVQWLHAFL---KRNPGNHLYKWKQ 253
Query: 241 LTESSNIARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRL 300
+ + N+ ++ + Y + V A N
Sbjct: 254 IPDCENVKTTQCVFP---------------------QNVFQKGIYLLRVQASDGNNTSFW 292
Query: 301 S 301
S
Sbjct: 293 S 293
Score = 63.8 bits (154), Expect = 2e-11
Identities = 29/182 (15%), Positives = 47/182 (25%), Gaps = 19/182 (10%)
Query: 9 TIELVWSQPT------QTYGEILGYRVKYGVREHTLKENLVNSKNMSFLITNLERGVEYE 62
I + S T G Y + ++E + + I L Y
Sbjct: 115 AIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEER-IENIYSRHKIYKLSPETTYC 173
Query: 63 FRIAGQNHIG--YGQETVRYYTTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQ 120
++ G + + PP + WD
Sbjct: 174 LKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKWDYTYAN--MTF 231
Query: 121 IVLYNVKFHKKIDANNVIH-------RNTTQTKAVFS-NLEEGIEYSAEVQAITKAGPGP 172
V + F K+ N++ N T+ VF N+ + Y VQA
Sbjct: 232 QVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSF 291
Query: 173 WS 174
WS
Sbjct: 292 WS 293
>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy,
decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo
sapiens} PDB: 3lb6_D*
Length = 380
Score = 72.9 bits (178), Expect = 3e-14
Identities = 33/299 (11%), Positives = 77/299 (25%), Gaps = 48/299 (16%)
Query: 9 TIELVWSQPTQT---YGEILGYRVKYGVREHTLKENLVNSKNMSFLITNLERGVEYEFRI 65
+ L W P + Y +KY + ++ +L +G+E
Sbjct: 48 YLYLQWQPPLSLDHFKECTVEYELKYRNIGSETWKTIITKNLHYKDGFDLNKGIEAXIHT 107
Query: 66 AGQNHIGYGQE------TVRYYTTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNG 119
G E Y+ +P+G P ++ + + +W P + +
Sbjct: 108 LLPWQCTNGSEVQSSWAETTYWISPQGIPETXVQDMDCVYYNWQYLLCSWKPGIGVLLDT 167
Query: 120 QIVLY--NVKFHKKIDANNVIHRNTTQTKAVF--SNLEEGIEYSAEVQAITKAGPGPWSP 175
L+ + + I + F + ++ V ++ P S
Sbjct: 168 NYNLFYWYEGLDHALQCVDYIKADGQNIGCRFPYLEASDYKDFYICVNGSSENKPIRSSY 227
Query: 176 KLSLMTARDMVRAPLGVKALATSDQSVEVWWK-PVPAGRGKILGYQIFYTMTAVEDLDEW 234
+ P+ + S +++ W P+ + Y+I
Sbjct: 228 FTFQLQNIVKPLPPVYLTFTRESSCEIKLKWSIPLGPIPARCFDYEIEIRED-------- 279
Query: 235 SQKSIPLTESSNIARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAART 293
D + E+ L + + + V ++
Sbjct: 280 --------------------------DTTLVTATVENETYTLKTTNETRQLCFVVRSKV 312
Score = 68.7 bits (167), Expect = 7e-13
Identities = 41/287 (14%), Positives = 76/287 (26%), Gaps = 43/287 (14%)
Query: 82 TTPEGPPTGPPANIS-HHFQTPDVVCITWDPPLRT-HRNGQIVLYNVKFHKKIDANNVIH 139
++ PP + + + W PPL H V Y +K+
Sbjct: 25 SSDTEIKVNPPQDFEIVDPGYLGYLYLQWQPPLSLDHFKECTVEYELKYRNIGSETWKTI 84
Query: 140 RNTTQTKAVFSNLEEGIEYSAEVQAITKAGPG-----PWSPKLSLMTARDMVRA-PLGVK 193
+L +GIE + G W+ ++ + + +
Sbjct: 85 ITKNLHYKDGFDLNKGIEAXIHTLLPWQCTNGSEVQSSWAETTYWISPQGIPETXVQDMD 144
Query: 194 ALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNIARIFYT 253
+ + Q + WKP Y +FY E LD Q + I
Sbjct: 145 CVYYNWQYLLCSWKPGIGV-LLDTNYNLFYWY---EGLDHALQCVDYIKADGQ--NIGCR 198
Query: 254 MTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLSGKV--TVKVKPE 311
+ ++ + V + N R S +
Sbjct: 199 FP--------------------YLEASDYKDFYICVNGSSENKPIRSSYFTFQLQNIVKP 238
Query: 312 DVPLSLRAHDVSTHSMTLSWSPPIKLNP-------VKYKEVSEKIQE 351
P+ L S+ + L WS P+ P ++ +E +
Sbjct: 239 LPPVYLTFTRESSCEIKLKWSIPLGPIPARCFDYEIEIREDDTTLVT 285
Score = 64.1 bits (155), Expect = 2e-11
Identities = 16/175 (9%), Positives = 41/175 (23%), Gaps = 12/175 (6%)
Query: 9 TIELVWSQPTQTYGEI---LGYRVKYGVREHTLKENLVNSKNM---SFLITNLERGVEYE 62
+ W + L Y + + + F ++
Sbjct: 152 YLLCSWKPGIGVLLDTNYNLFYWYEGLDHALQCVDYIKADGQNIGCRFPYLEASDYKDFY 211
Query: 63 FRIAGQNHIGYGQETVRYYTTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIV 122
+ G + + + + PP ++ ++ + + W PL
Sbjct: 212 ICVNGSSENKPIRSSYFTFQLQNIVKPLPPVYLTFTRESSCEIKLKWSIPLGPIPARCFD 271
Query: 123 LYNVKFHKKIDANNVIHRNTTQTKAVFSNLEEGIEYSAEVQAITK---AGPGPWS 174
Y ++ + E + V++ + G WS
Sbjct: 272 -YEIEIREDDTTLVTATVENETYT--LKTTNETRQLCFVVRSKVNIYCSDDGIWS 323
>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III
module, beta-sheet sandwich, cell membrane,
glycoprotein, immunoglobulin domain; NMR {Homo sapiens}
Length = 114
Score = 65.2 bits (159), Expect = 2e-13
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYGVR--EHTLKENLVNSKNMSFLITNLERGVEYEFRIA 66
+ +L ++ IL Y VKY + E E V ++ +L+ + YE +I
Sbjct: 23 SFKLSITKQDDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQIT 82
Query: 67 GQNHIGYGQETVRYYTTPEGPPTGPPANISHH 98
N +GY + TV ++ P P + HH
Sbjct: 83 AANRLGYSEPTVYEFSMPPKPNIIKDHHHHHH 114
Score = 42.9 bits (101), Expect = 2e-05
Identities = 12/96 (12%), Positives = 28/96 (29%), Gaps = 6/96 (6%)
Query: 82 TTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDAN--NVIH 139
P PP+ + ++ I+ Y VK+ K +
Sbjct: 3 EASMREP-SPPSIHGQP-SSGKSFKLSITKQ--DDGGAPILEYIVKYRSKDKEDQWLEKK 58
Query: 140 RNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSP 175
+ + +L+ + Y ++ A + G +
Sbjct: 59 VQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTV 94
Score = 36.4 bits (84), Expect = 0.003
Identities = 19/127 (14%), Positives = 38/127 (29%), Gaps = 31/127 (24%)
Query: 189 PLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNIA 248
P + +S +S ++ G IL Y + Y + + D+W +K + +
Sbjct: 11 PPSIHGQPSSGKSFKLSITKQDDGGAPILEYIVKY--RSKDKEDQWLEKKVQGNKD---- 64
Query: 249 RIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLSG-KVTVK 307
L L+ Y V + A G + + ++
Sbjct: 65 ------------------------HIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMP 100
Query: 308 VKPEDVP 314
KP +
Sbjct: 101 PKPNIIK 107
Score = 26.7 bits (59), Expect = 6.2
Identities = 6/32 (18%), Positives = 11/32 (34%), Gaps = 1/32 (3%)
Query: 303 KVTVKVKPEDVPLSLRAHDVSTHSMTLSWSPP 334
+ ++ P S+ S S LS +
Sbjct: 1 EAEASMREPSPP-SIHGQPSSGKSFKLSITKQ 31
>1x4x_A Fibronectin type-III domain containing protein 3A; FN3,
immunoglobulin-like beta- sandwich fold, KIAA0970,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 106
Score = 65.0 bits (159), Expect = 2e-13
Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 3/83 (3%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYGVREHTLKENLVNSKNMSFLITNLERGVEYEFRIAGQ 68
++ W P ++ YR+++G + +S+ I L Y R+
Sbjct: 23 CAQVNWEVPLSNGTDVTEYRLEWG-GVEGSMQICYCGPGLSYEIKGLSPATTYYCRVQAL 81
Query: 69 NHIGYGQ--ETVRYYTTPEGPPT 89
+ +G G E V T P P+
Sbjct: 82 SVVGAGPFSEVVACVTPPSSGPS 104
Score = 62.3 bits (152), Expect = 2e-12
Identities = 15/100 (15%), Positives = 33/100 (33%), Gaps = 4/100 (4%)
Query: 82 TTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANNVIHRN 141
++ P ++ + W+ P + Y ++ ++ + I
Sbjct: 2 SSGSSGP-DQCKPPQVTCRSATCAQVNWEVP--LSNGTDVTEYRLE-WGGVEGSMQICYC 57
Query: 142 TTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMT 181
L Y VQA++ G GP+S ++ +T
Sbjct: 58 GPGLSYEIKGLSPATTYYCRVQALSVVGAGPFSEVVACVT 97
Score = 49.6 bits (119), Expect = 6e-08
Identities = 18/127 (14%), Positives = 28/127 (22%), Gaps = 33/127 (25%)
Query: 188 APLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNI 247
+ S +V W+ + + Y++ +
Sbjct: 10 QCKPPQVTCRSATCAQVNWEVPLSNGTDVTEYRLEWG----------------------- 46
Query: 248 ARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLSGKVTVK 307
S E+ L T Y V A +V G G S V
Sbjct: 47 ----------GVEGSMQICYCGPGLSYEIKGLSPATTYYCRVQALSVVGAGPFSEVVACV 96
Query: 308 VKPEDVP 314
P P
Sbjct: 97 TPPSSGP 103
Score = 30.7 bits (70), Expect = 0.21
Identities = 4/23 (17%), Positives = 7/23 (30%)
Query: 312 DVPLSLRAHDVSTHSMTLSWSPP 334
D + S ++W P
Sbjct: 9 DQCKPPQVTCRSATCAQVNWEVP 31
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 68.7 bits (167), Expect = 5e-13
Identities = 21/143 (14%), Positives = 49/143 (34%), Gaps = 3/143 (2%)
Query: 35 EHTLKENLVNSKNMSFLITNLERGVEYEFRIAGQNHIGYGQETVRYYTTPEGPPTGPPAN 94
+ + + + K L Y + + +G + + PPAN
Sbjct: 143 QEPCQYSQESQKFSCQLAVPEGDSSFYIVSMCVASSVGSKFSKTQTFQGCGILQPDPPAN 202
Query: 95 ISHHF--QTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDAN-NVIHRNTTQTKAVFSN 151
I+ + P + +TW P + + + + +++ + Q V +
Sbjct: 203 ITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKTFTTWMVKDLQHHCVIHD 262
Query: 152 LEEGIEYSAEVQAITKAGPGPWS 174
G+ + +++A + G G WS
Sbjct: 263 AWSGLRHVVQLRAQEEFGQGEWS 285
Score = 53.7 bits (128), Expect = 4e-08
Identities = 18/109 (16%), Positives = 34/109 (31%), Gaps = 6/109 (5%)
Query: 9 TIELVWSQPT--QTYGEILGYRVKY-GVREHTLKENLVNSKNMSFLITNLERGVEYEFRI 65
+ + W P + L + ++Y R T +V +I + G+ + ++
Sbjct: 214 WLSVTWQDPHSWNSSFYRLRFELRYRAERSKTFTTWMVKDLQHHCVIHDAWSGLRHVVQL 273
Query: 66 AGQNHIGYG---QETVRYYTTPEGPPTGPPANISHHFQTPDVVCITWDP 111
Q G G + + TP PPA + D
Sbjct: 274 RAQEEFGQGEWSEWSPEAMGTPWTESRSPPAENEVSTPMQALTTNKDDD 322
Score = 46.0 bits (108), Expect = 1e-05
Identities = 29/225 (12%), Positives = 52/225 (23%), Gaps = 40/225 (17%)
Query: 86 GPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANNVIHRNTTQT 145
P P V W P + VL KF + +Q
Sbjct: 92 DVPPEEPQLSCFRKSPLSNVVCEWGPRSTPSLTTKAVLLVRKFQNSPAEDFQEPCQYSQE 151
Query: 146 KAVFS-----NLEEGIEYSAEVQAITKAGPGPWSPKLSLMTARDMVRAP--LGVKALATS 198
FS + Y + + G + P + V A+A +
Sbjct: 152 SQKFSCQLAVPEGDSSFYIVSMCVASSVGSKFSKTQTFQGCGILQPDPPANITVTAVARN 211
Query: 199 DQSVEVWWKPVPA--GRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNIARIFYTMTA 256
+ + V W+ + L +++ Y E ++
Sbjct: 212 PRWLSVTWQDPHSWNSSFYRLRFELRYR---AERSKTFTT-------------------- 248
Query: 257 VEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLS 301
L + + V + A+ G G S
Sbjct: 249 --------WMVKDLQHHCVIHDAWSGLRHVVQLRAQEEFGQGEWS 285
>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 123
Score = 64.5 bits (157), Expect = 6e-13
Identities = 19/103 (18%), Positives = 32/103 (31%), Gaps = 3/103 (2%)
Query: 82 TTPEGPPTGPPANISHHFQTPDVVCITWDPPL--RTHRNGQIVLYNVKFHKKIDANN-VI 138
P PP + T D V ++W + + ++ LY V++ A+
Sbjct: 12 VPDLSTPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTSFSASAKYK 71
Query: 139 HRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMT 181
+TT + L+ Y V WS T
Sbjct: 72 SEDTTSLSYTATGLKPNTMYEFSVMVTKNRRSSTWSMTAHATT 114
Score = 51.4 bits (123), Expect = 2e-08
Identities = 15/89 (16%), Positives = 29/89 (32%), Gaps = 6/89 (6%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYGVREHTL-----KENLVNSKNMSFLITNLERGVEYEF 63
+ + W+ + + Y VR T K ++ ++S+ T L+ YEF
Sbjct: 34 AVRVSWADNSVPKNQKTSEVRLYTVRWRTSFSASAKYKSEDTTSLSYTATGLKPNTMYEF 93
Query: 64 RIAGQNHIGYGQE-TVRYYTTPEGPPTGP 91
+ + + TT E
Sbjct: 94 SVMVTKNRRSSTWSMTAHATTYEASGPSS 122
Score = 49.1 bits (117), Expect = 1e-07
Identities = 20/129 (15%), Positives = 33/129 (25%), Gaps = 28/129 (21%)
Query: 188 APLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNI 247
P+GV+A+A + +V V W + + YT+ ++ T
Sbjct: 21 PPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTSFSASAKYKSEDTT---- 76
Query: 248 ARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLSGKVTVK 307
+ S T L+ T Y +V S
Sbjct: 77 -----------------------SLSYTATGLKPNTMYEFSVMVTKNRRSSTWSMTAHAT 113
Query: 308 VKPEDVPLS 316
E S
Sbjct: 114 T-YEASGPS 121
Score = 35.2 bits (81), Expect = 0.009
Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 2/78 (2%)
Query: 296 GLGRLSGKVTVKVKPEDVPLSLRAHDVSTHSMTLSWSPPIKLNPVKYKEVSE-KIQER-R 353
G V P P+ ++A ++ ++ +SW+ K EV ++ R
Sbjct: 4 GSSGFPTSVPDLSTPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTS 63
Query: 354 LQKYGQYRYFETRDESYI 371
+Y+ +T SY
Sbjct: 64 FSASAKYKSEDTTSLSYT 81
>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91,
TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 110
Score = 63.2 bits (154), Expect = 1e-12
Identities = 15/83 (18%), Positives = 26/83 (31%), Gaps = 2/83 (2%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYGVREHTLKENLVNSKNMSFLITNLERGVEYEFRIAGQ 68
+ L W QP + GY ++ + K + L Y R+
Sbjct: 26 SATLSWKQPPLSTVPADGYILELDDGNGGQFREVYVGKETMCTVDGLHFNSTYNARVKAF 85
Query: 69 NHIGYGQ--ETVRYYTTPEGPPT 89
N G +T+ T+ P+
Sbjct: 86 NKTGVSPYSKTLVLQTSEGSGPS 108
Score = 62.1 bits (151), Expect = 3e-12
Identities = 18/103 (17%), Positives = 31/103 (30%), Gaps = 2/103 (1%)
Query: 82 TTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANNVIHRN 141
+ P P + + ++W P + Y ++
Sbjct: 4 GSSGPVPATPILQLEECCTHNNSATLSWKQPPLS--TVPADGYILELDDGNGGQFREVYV 61
Query: 142 TTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTARD 184
+T L Y+A V+A K G P+S L L T+
Sbjct: 62 GKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEG 104
Score = 39.0 bits (91), Expect = 4e-04
Identities = 18/128 (14%), Positives = 33/128 (25%), Gaps = 32/128 (25%)
Query: 189 PLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNIA 248
L ++ T + S + WK P GY + E
Sbjct: 14 ILQLEECCTHNNSATLSWKQPPLSTVPADGYIL-----------ELDDG----------- 51
Query: 249 RIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLSGKVTVKV 308
+ ++ + V + L + Y V A G+ S + ++
Sbjct: 52 ----------NGGQFREVYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQT 101
Query: 309 KPEDVPLS 316
P S
Sbjct: 102 SEGSGPSS 109
Score = 28.6 bits (64), Expect = 1.4
Identities = 10/29 (34%), Positives = 11/29 (37%), Gaps = 4/29 (13%)
Query: 310 PEDVP----LSLRAHDVSTHSMTLSWSPP 334
VP L L +S TLSW P
Sbjct: 6 SGPVPATPILQLEECCTHNNSATLSWKQP 34
>3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain,
cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond,
glycoprotein, membrane; 2.14A {Homo sapiens}
Length = 201
Score = 65.5 bits (159), Expect = 1e-12
Identities = 27/183 (14%), Positives = 58/183 (31%), Gaps = 15/183 (8%)
Query: 12 LVWSQPTQTYGEILGYRVKYGVREHTLKENLVNSKNMSFLITNLERGVEYEFRIAGQNHI 71
L W P G++ + +Y ++ + + ++L + ++ R+ +
Sbjct: 19 LQWESPAFAKGQL-TFTAQYL-SYRIFQDKCMQTTLTECDFSSLSKYGDHTLRVRAEFAD 76
Query: 72 GYGQETVRYYTTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVL-------- 123
+ ++ + GPP D + + + P + +
Sbjct: 77 EHSDWVQITFSPVDDTIIGPPGM--QVEVLADCLHMRFLAPKIENEYETWTMKNVYNSWT 134
Query: 124 YNVKFHKKIDANNVIHRNTTQTKAVFSNLEEGIEYSAEVQAITKA--GPGPWSPKLSLMT 181
YNV++ K+ + V NLE Y +V+ G WS + T
Sbjct: 135 YNVQYWKQ-GTDEKFQITPQYDFEVLRNLEPWTTYCVQVRGFLPDRNKAGEWSEPVCEQT 193
Query: 182 ARD 184
D
Sbjct: 194 THD 196
Score = 60.5 bits (146), Expect = 7e-11
Identities = 36/227 (15%), Positives = 69/227 (30%), Gaps = 33/227 (14%)
Query: 91 PPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANNVIHRNTTQTKAVFS 150
PP N+ + + W+ P + + ++ TT T+ FS
Sbjct: 4 PPENVRMNSVNFKNIL-QWESPAFAKGQ---LTFTAQY-LSYRIFQDKCMQTTLTECDFS 58
Query: 151 NLEEGIEYSAEVQAITKAGPGPWSPKLSLMTARDMVRAPLGVKALATSDQSVEVWWKPVP 210
+L + +++ V+A W +++ D + P G++ +D + P
Sbjct: 59 SLSKYGDHTLRVRAEFADEHSDWV-QITFSPVDDTIIGPPGMQVEVLADCLHMRFLAPKI 117
Query: 211 AGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNIARIFYTMTAVEDLDEWSQKSVPL 270
+ + Y Y + + + + P
Sbjct: 118 ENEYETWTMKNVYN------------------------SWTYNVQYWKQGTDEKFQITPQ 153
Query: 271 TESAELTSLEKFTEYAVAVAART--VNGLGRLSGKVTVKVKP-EDVP 314
+ L +LE +T Y V V N G S V + E VP
Sbjct: 154 YDFEVLRNLEPWTTYCVQVRGFLPDRNKAGEWSEPVCEQTTHDETVP 200
Score = 33.9 bits (77), Expect = 0.059
Identities = 8/61 (13%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Query: 5 EPEVTIELVWSQPTQTYGEILGYRVKYGVREHTLKENLVNSKNMSFLITNLERGVEYEFR 64
+ + Y V+Y ++ T ++ + + ++ NLE Y +
Sbjct: 113 LAPKIENEYETWTMKNVYNSWTYNVQYW-KQGTDEKFQITPQYDFEVLRNLEPWTTYCVQ 171
Query: 65 I 65
+
Sbjct: 172 V 172
>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 118
Score = 63.2 bits (154), Expect = 2e-12
Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYGVREHT--LKENLVNSKNMSFLITNLERGVEYEFRIA 66
++ + W +P + GY V+Y + + N+ N S ++ +L Y FR+
Sbjct: 33 SLRVSWQEPRCE-RPLQGYSVEYQLLNGGELHRLNIPNPAQTSVVVEDLLPNHSYVFRVR 91
Query: 67 GQNHIGYGQET---VRYYTTPEGPPTG 90
Q+ G+G+E + + GP +G
Sbjct: 92 AQSQEGWGREREGVITIESQVSGPSSG 118
Score = 62.0 bits (151), Expect = 4e-12
Identities = 26/148 (17%), Positives = 39/148 (26%), Gaps = 31/148 (20%)
Query: 169 GPGPWSPKLSLMTARDMVRAPLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAV 228
G S + P + A S+ V W+ P + GY + Y +
Sbjct: 1 GSSGSSGSHDSRLTAGVPDTPTRLVFSALGPTSLRVSWQE-PRCERPLQGYSVEYQ---L 56
Query: 229 EDLDEWSQKSIPLTESSNIARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVA 288
+ E + +IP P S + L Y
Sbjct: 57 LNGGELHRLNIP---------------------------NPAQTSVVVEDLLPNHSYVFR 89
Query: 289 VAARTVNGLGRLSGKVTVKVKPEDVPLS 316
V A++ G GR V P S
Sbjct: 90 VRAQSQEGWGREREGVITIESQVSGPSS 117
Score = 61.3 bits (149), Expect = 6e-12
Identities = 21/109 (19%), Positives = 36/109 (33%), Gaps = 8/109 (7%)
Query: 83 TPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDAN--NVIHR 140
G P P + P + ++W P + Y+V++ +
Sbjct: 13 LTAGVP-DTPTRLVFSALGPTSLRVSWQEP---RCERPLQGYSVEYQLLNGGELHRLNIP 68
Query: 141 NTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTARDMVRAP 189
N QT V +L Y V+A ++ G G ++T V P
Sbjct: 69 NPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGRERE--GVITIESQVSGP 115
Score = 37.8 bits (88), Expect = 0.001
Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 9/61 (14%)
Query: 296 GLGRLSGKVTVKVKPEDVP---LSLRAHDVSTHSMTLSWSPPIKLNP-----VKYKEVSE 347
G SG ++ VP L + S+ +SW P P V+Y+ ++
Sbjct: 1 GSSGSSGSHDSRL-TAGVPDTPTRLVFSALGPTSLRVSWQEPRCERPLQGYSVEYQLLNG 59
Query: 348 K 348
Sbjct: 60 G 60
>1x3d_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 118
Score = 62.8 bits (153), Expect = 2e-12
Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Query: 9 TIELVWSQPTQTYGEILGYRVKY-GVREHTLKENLVNSKNMSFLITNLERGVEYEFRIAG 67
++ L W P+ +I + +++ + + F IT L + +FR++
Sbjct: 33 SLTLQWKAPSDNGSKIQNFVLEWDEGKGNGEFCQCYMGSQKQFKITKLSPAMGCKFRLSA 92
Query: 68 QNHIGYGQ--ETVRYYTTPEGPPT 89
+N G E V YYT+ P+
Sbjct: 93 RNDYGTSGFSEEVLYYTSGCSGPS 116
Score = 49.3 bits (118), Expect = 1e-07
Identities = 15/110 (13%), Positives = 36/110 (32%), Gaps = 4/110 (3%)
Query: 74 GQETVRYYTTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKID 133
G +TT P P +T + + + W P + +I + +++ +
Sbjct: 4 GSSGAEIFTTLSCEP-DIPNPPRIANRTKNSLTLQWKAP--SDNGSKIQNFVLEWDEGKG 60
Query: 134 AN-NVIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTA 182
+Q + + L + + A G +S ++ T+
Sbjct: 61 NGEFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTS 110
Score = 43.5 bits (103), Expect = 1e-05
Identities = 22/148 (14%), Positives = 37/148 (25%), Gaps = 31/148 (20%)
Query: 169 GPGPWSPKLSLMTARDMVRAPLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAV 228
G S T P + + S+ + WK KI + +
Sbjct: 1 GSSGSSGAEIFTTLSCEPDIPNPPRIANRTKNSLTLQWKAPSDNGSKIQNFVL------- 53
Query: 229 EDLDEWSQKSIPLTESSNIARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVA 288
EW + E+ Q + + ++T L
Sbjct: 54 ----EWDEGK--------------------GNGEFCQCYMGSQKQFKITKLSPAMGCKFR 89
Query: 289 VAARTVNGLGRLSGKVTVKVKPEDVPLS 316
++AR G S +V P S
Sbjct: 90 LSARNDYGTSGFSEEVLYYTSGCSGPSS 117
Score = 35.1 bits (81), Expect = 0.008
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 301 SGKVTVKVKPEDVPLSLRAHDVSTHSMTLSWSPP 334
T+ +P D+P R + + +S+TL W P
Sbjct: 9 EIFTTLSCEP-DIPNPPRIANRTKNSLTLQWKAP 41
>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1,
NCAM-120, CD56 antigen, membra protein, glycoprotein,
structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo
sapiens}
Length = 122
Score = 61.3 bits (149), Expect = 8e-12
Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 8/96 (8%)
Query: 9 TIELVWSQPTQTYG-EILGYRVKY-----GVREHTLKENLVNSKNMSFLITNLERGVEYE 62
T ++ + +P T G IL Y+ ++ V + S I L+ Y
Sbjct: 22 TAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYA 81
Query: 63 FRIAGQNHIGYGQ--ETVRYYTTPEGPPTGPPANIS 96
R+A N G G+ + T P P+ P S
Sbjct: 82 VRLAALNGKGLGEISAASEFKTQPVREPSAPKLEGS 117
Score = 59.0 bits (143), Expect = 5e-11
Identities = 13/105 (12%), Positives = 27/105 (25%), Gaps = 8/105 (7%)
Query: 82 TTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKK-----IDANN 136
++ P P+ + +D P I+ Y ++
Sbjct: 2 SSGSSGP-SSPSIDQVEP-YSSTAQVQFDEP-EATGGVPILKYKAEWRAVGEEVWHSKWY 58
Query: 137 VIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMT 181
+ + L+ Y+ + A+ G G S T
Sbjct: 59 DAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKT 103
Score = 47.5 bits (113), Expect = 4e-07
Identities = 25/127 (19%), Positives = 39/127 (30%), Gaps = 27/127 (21%)
Query: 188 APLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNI 247
+P + S + + +P G IL Y+ + + W K E+S
Sbjct: 10 SPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAV---GEEVWHSKWYDAKEASM- 65
Query: 248 ARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLSGKVTVK 307
+ L+ T YAV +AA GLG +S K
Sbjct: 66 -----------------------EGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFK 102
Query: 308 VKPEDVP 314
+P P
Sbjct: 103 TQPVREP 109
>3g9v_A Interleukin 22 receptor, alpha 2; cytokine, cytokine receptor,
receptor, glycoprotein, polymorphism, secreted,
cytokine/cytokine receptor complex; 2.76A {Homo sapiens}
Length = 211
Score = 63.3 bits (153), Expect = 1e-11
Identities = 26/180 (14%), Positives = 47/180 (26%), Gaps = 16/180 (8%)
Query: 12 LVWSQPTQTYGEILGYRVKY---GVREHTLKENLVNSKNMSFLITN--LERGVEYEFRIA 66
L W G Y V+Y G R+ KE+ ++ +S +T+ + Y R+
Sbjct: 25 LQWQPGRALTGNSSVYFVQYKIYGQRQWKNKEDCWGTQELSCDLTSETSDIQEPYYGRVR 84
Query: 67 GQNHIGYG-----QETVRYYTTPEGPP----TGPPANISHHFQTPDVVCITWDPPLRTHR 117
+ Y ++ T PP T ++ P++ +
Sbjct: 85 AASAGSYSEWSMTPRFTPWWETKIDPPVMNITQVNGSLLVILHAPNLPYRYQKEKNVSIE 144
Query: 118 NGQIVLYNVKFHKKIDANNVIHRNTTQTKAVFSNLEEGIEYSAEVQAITKA--GPGPWSP 175
+ +LY V L Y + S
Sbjct: 145 DYYELLYRVFIINNSLEKEQKVYEGAHRAVEIEALTPHSSYCVVAEIYQPMLDRRSQRSE 204
Score = 48.2 bits (114), Expect = 1e-06
Identities = 27/217 (12%), Positives = 58/217 (26%), Gaps = 31/217 (14%)
Query: 83 TPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNV---KFHKKIDANNVIH 139
T + P + + + + W P G +Y V + ++ N
Sbjct: 2 TQSTHESLKPQRVQFQSRNFHNI-LQWQPG--RALTGNSSVYFVQYKIYGQRQWKNKEDC 58
Query: 140 RNTTQTKAVFSN--LEEGIEYSAEVQAITKAGPGPWSPKLSLMTARDMVRAPLGVKALAT 197
T + ++ + Y V+A + WS + P +
Sbjct: 59 WGTQELSCDLTSETSDIQEPYYGRVRAASAGSYSEWSMTPRFTPWWETKIDPPVMNITQV 118
Query: 198 SDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNIARIFYTMTAV 257
+ + + P R + + SI + + Y + +
Sbjct: 119 NGSLLVILHAPNLPYRYQ-----------------KEKNVSIE-----DYYELLYRVFII 156
Query: 258 EDLDEWSQKSVPLTE-SAELTSLEKFTEYAVAVAART 293
+ E QK + E+ +L + Y V
Sbjct: 157 NNSLEKEQKVYEGAHRAVEIEALTPHSSYCVVAEIYQ 193
>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell
adhesion, coiled coil, EGF-like domain, extracellular
matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A
1ten_A
Length = 104
Score = 60.1 bits (146), Expect = 1e-11
Identities = 16/92 (17%), Positives = 28/92 (30%), Gaps = 7/92 (7%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYGV--REHTLKENLVNSKNMSFLITNLERGVEYEFRIA 66
T + W P+ + G+ + YG+ + + I NL+ EYE +
Sbjct: 18 TALITWMPPS---QPVDGFELTYGIKDVPGDRTTIDLTEDENQYSIGNLKPDTEYEVSLI 74
Query: 67 GQNHIGYGQETVRYYTTPEGPPTGPPANISHH 98
+ +TT HH
Sbjct: 75 SRRGDMSSNPAKETFTTGLAAALEHH--HHHH 104
Score = 43.5 bits (103), Expect = 8e-06
Identities = 22/134 (16%), Positives = 42/134 (31%), Gaps = 37/134 (27%)
Query: 188 APLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNI 247
AP ++ +D + + W P + G+++ Y + V + +I LTE N
Sbjct: 5 APSQIEVKDVTDTTALITWMP---PSQPVDGFELTYGIKDVPG----DRTTIDLTEDEN- 56
Query: 248 ARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGR-LSGKVTV 306
+ +L+ TEY V++ +R + T
Sbjct: 57 -------------------------QYSIGNLKPDTEYEVSLISRRGDMSSNPAKETFTT 91
Query: 307 KVKPEDVPLSLRAH 320
+ L H
Sbjct: 92 GL---AAALEHHHH 102
Score = 42.0 bits (99), Expect = 3e-05
Identities = 16/101 (15%), Positives = 30/101 (29%), Gaps = 8/101 (7%)
Query: 91 PPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANN--VIHRNTTQTKAV 148
P+ I T ITW PP + + + + + K + I + +
Sbjct: 5 APSQIEVKDVTDTTALITWMPP-----SQPVDGFELTYGIKDVPGDRTTIDLTEDENQYS 59
Query: 149 FSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTARDMVRAP 189
NL+ EY + + + K + T
Sbjct: 60 IGNLKPDTEYEVSLISRRGDMSSNPA-KETFTTGLAAALEH 99
Score = 34.3 bits (79), Expect = 0.013
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 312 DVPLSLRAHDVSTHSMTLSWSPP 334
D P + DV+ + ++W PP
Sbjct: 4 DAPSQIEVKDVTDTTALITWMPP 26
>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine,
hormone-hormone recep complex; 2.00A {Homo sapiens} PDB:
3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B
3ew3_B 3npz_B 1f6f_B 2lfg_A
Length = 210
Score = 62.8 bits (152), Expect = 1e-11
Identities = 34/188 (18%), Positives = 52/188 (27%), Gaps = 11/188 (5%)
Query: 9 TIELVWSQPTQTYGE---ILGYRVKYGVREHTLKENLVNSKNM-SFLITNLERGVEYEFR 64
T W T L Y + H + + N F Y
Sbjct: 19 TFTCWWRPGTDGGLPTNYSLTYHREGETLMHECPDYITGGPNSCHFGKQYTSMWRTYIMM 78
Query: 65 IAGQNHIGYGQETVRYYTTPE----GPPTGPPANISHHFQTPDVVCITWDPP--LRTHRN 118
+ N +G Y PP + + I W PP +
Sbjct: 79 VNATNQMGSSFSDELYVDVTYIVQPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTG 138
Query: 119 GQIVLYNVKFHKKIDANNVIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGP-GPWSPKL 177
+LY ++ + A IH QT+ +L G +Y +V+ G WSP
Sbjct: 139 WFTLLYEIRLKPEKAAEWEIHFAGQQTEFKILSLHPGQKYLVQVRCKPDHGYWSAWSPAT 198
Query: 178 SLMTARDM 185
+ D
Sbjct: 199 FIQIPSDF 206
Score = 54.7 bits (131), Expect = 7e-09
Identities = 32/236 (13%), Positives = 55/236 (23%), Gaps = 37/236 (15%)
Query: 87 PPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANNVIHRNTTQTK 146
PP G P + W P L + + + +
Sbjct: 3 PP-GKPEIFKCRSPNKETFTCWWRPGTDGGLPTNYSLTYHREGETLMHECPDYITGGPNS 61
Query: 147 AVFSNLEEGIEYSAE--VQAITKAGPGPWSPKLSLMTARDMVRAP----LGVKALATSDQ 200
F + + V A + G +T P + VK
Sbjct: 62 CHFGKQYTSMWRTYIMMVNATNQMGSSFSDELYVDVTYIVQPDPPLELAVEVKQPEDRKP 121
Query: 201 SVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNIARIFYTMTAVEDL 260
+ + W P K + + Y I E
Sbjct: 122 YLWIKWSPPTLIDLKTGWFTLLY-------------------------EIRLK---PEKA 153
Query: 261 DEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGL-GRLSGKVTVKVKPEDVPL 315
EW ++ SL +Y V V + +G S +++ P D +
Sbjct: 154 AEWEIHFAGQQTEFKILSLHPGQKYLVQVRCKPDHGYWSAWSPATFIQI-PSDFTM 208
Score = 44.7 bits (105), Expect = 2e-05
Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 6/92 (6%)
Query: 4 EEPEVTIELVWSQPT----QTYGEILGYRVKYGVREHTLKENLVNSKNMSFLITNLERGV 59
E+ + + + WS PT +T L Y ++ + E + F I +L G
Sbjct: 117 EDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEIHFAGQQTEFKILSLHPGQ 176
Query: 60 EYEFRIAGQNHIGYGQE--TVRYYTTPEGPPT 89
+Y ++ + GY + P
Sbjct: 177 KYLVQVRCKPDHGYWSAWSPATFIQIPSDFTM 208
>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic
receptor, signal transduction cytokine; HET: NAG; 2.80A
{Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A
1gcf_A
Length = 215
Score = 62.5 bits (151), Expect = 2e-11
Identities = 24/146 (16%), Positives = 49/146 (33%), Gaps = 14/146 (9%)
Query: 49 SFLITNLERGVEYEFRIAGQNHIGYGQETVRYYTTPEGPPTGPPANISHHF------QTP 102
S NL + +N +G + + PP + P
Sbjct: 69 SIPRKNLLLYQYMAIWVQAENMLGSSESPKLCLDPMDVVKLEPPMLQALDIGPDVVSHQP 128
Query: 103 DVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANN---VIHRNTTQTKAVFSNLEEGIEYS 159
+ ++W P + +++ ++ N V H +++ + L + Y+
Sbjct: 129 GCLWLSWKPWKPS--EYMEQECELRYQPQLKGANWTLVFHLPSSKDQFELCGLHQAPVYT 186
Query: 160 AEVQAITKAGPG---PWSPKLSLMTA 182
+++ I + PG PWSP L L
Sbjct: 187 LQMRCIRSSLPGFWSPWSPGLQLRPT 212
Score = 51.7 bits (123), Expect = 7e-08
Identities = 35/230 (15%), Positives = 57/230 (24%), Gaps = 44/230 (19%)
Query: 86 GPPTGPPANIS--HHFQTPDVVCITWDPPLRTHRNGQIVLY------NVKFHKKIDANNV 137
G P P+N+S H T +VC W+P TH +L + ++ + V
Sbjct: 2 GYPPASPSNLSCLMHLTTNSLVC-QWEPGPETHLPTSFILKSFRSRADCQYQGDTIPDCV 60
Query: 138 IHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTARDMVRAPLGVKALAT 197
+ NL + VQA G + P+
Sbjct: 61 AKKRQNNCSIPRKNLLLYQYMAIWVQAENMLGSSESPKLCLDPMDVVKLEPPMLQALDIG 120
Query: 198 SD------QSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNIARIF 251
D + + WKP ++ Y L S +
Sbjct: 121 PDVVSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLKG---ANWTLVFHLPSSKD----- 172
Query: 252 YTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLS 301
EL L + Y + + + G S
Sbjct: 173 ---------------------QFELCGLHQAPVYTLQMRCIRSSLPGFWS 201
>1x5x_A Fibronectin type-III domain containing protein 3A; structural
genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 109
Score = 59.3 bits (144), Expect = 3e-11
Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
Query: 9 TIELVWSQPTQTYG-EILGYRV-KYGVREHTLKENLVNSKNMSFLITNLERGVEYEFRIA 66
+ L WS+P+ T E + Y + + + +++++ + NL R +Y+F++
Sbjct: 23 WLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDLAYTVKNLRRSTKYKFKVI 82
Query: 67 GQNHIGYGQ--ETVRYYTTPEGPPTGPPA 93
N G E V + T P+ P
Sbjct: 83 AYNSEGKSNPSEVVEFTTCPDSGP--SSG 109
Score = 53.9 bits (130), Expect = 2e-09
Identities = 16/110 (14%), Positives = 33/110 (30%), Gaps = 5/110 (4%)
Query: 82 TTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANN--VIH 139
++ P PA+ + + W P T + + + Y + ++ +
Sbjct: 2 SSGSSGP-SMPASPVLTKAGITWLSLQWSKPSGTP-SDEGISYIL-EMEEETSGYGFKPK 58
Query: 140 RNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTARDMVRAP 189
+ NL +Y +V A G S + T D +
Sbjct: 59 YDGEDLAYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCPDSGPSS 108
Score = 32.3 bits (74), Expect = 0.083
Identities = 7/30 (23%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 305 TVKVKPEDVPLSLRAHDVSTHSMTLSWSPP 334
+ P +P S ++L WS P
Sbjct: 3 SGSSGP-SMPASPVLTKAGITWLSLQWSKP 31
Score = 29.2 bits (66), Expect = 0.88
Identities = 17/128 (13%), Positives = 28/128 (21%), Gaps = 32/128 (25%)
Query: 188 APLGVKALATSDQSVEVWW-KPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSN 246
P + + W KP + + Y + E + +
Sbjct: 10 MPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEM---EEETSGYGFKPKYDGED--- 63
Query: 247 IARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLSGKVTV 306
V++L T+Y V A G S V
Sbjct: 64 ------LAYTVKNLRRS-------------------TKYKFKVIAYNSEGKSNPSEVVEF 98
Query: 307 KVKPEDVP 314
P+ P
Sbjct: 99 TTCPDSGP 106
>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 121
Score = 59.7 bits (145), Expect = 3e-11
Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
Query: 9 TIELVWSQPTQTYGEILGYRVKY--GVREHTLKENLVNSKNMSFLITNLERGVEYEFRIA 66
I L W++P ++ Y ++ T+ V+ K S + L Y+FR+
Sbjct: 35 AINLTWTKPFDGNSPLIRYILEMSENNAPWTVLLASVDPKATSVTVKGLVPARSYQFRLC 94
Query: 67 GQNHIGYGQ--ETVRYYTTPEGPPT 89
N +G GQ + + PE P+
Sbjct: 95 AVNDVGKGQFSKDTERVSLPESGPS 119
Score = 44.3 bits (105), Expect = 5e-06
Identities = 17/101 (16%), Positives = 33/101 (32%), Gaps = 6/101 (5%)
Query: 86 GPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANNVIHRNT--T 143
P P A +S + +TW P N ++ Y ++ + V+ +
Sbjct: 19 HAPEHPVATLST--VERRAINLTWTKP--FDGNSPLIRYILEMSENNAPWTVLLASVDPK 74
Query: 144 QTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTARD 184
T L Y + A+ G G +S ++ +
Sbjct: 75 ATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSLPE 115
Score = 32.7 bits (75), Expect = 0.063
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 3/36 (8%)
Query: 301 SGKVTVKVKPEDVP--LSLRAHDVSTHSMTLSWSPP 334
S + V+ P P V ++ L+W+ P
Sbjct: 9 SAHLRVRQLP-HAPEHPVATLSTVERRAINLTWTKP 43
Score = 32.7 bits (75), Expect = 0.064
Identities = 22/158 (13%), Positives = 38/158 (24%), Gaps = 46/158 (29%)
Query: 157 EYSAEVQAITKAGPGPWSPKLSLMTARDMVRAPLGVKALATSDQSVEVWWKPVPAGRGKI 216
SA ++ P P +L T +++ + W G +
Sbjct: 7 GRSAHLRVRQLPHA-PEHPVATLSTV---------------ERRAINLTWTKPFDGNSPL 50
Query: 217 LGYQIFYTMTAVEDLDEWSQKSIPLTESSNIARIFYTMTAVEDLDEWSQKSVPLTESAEL 276
+ Y + + E+ W+ P S +
Sbjct: 51 IRYILEMS----ENNAPWTVL--------------------------LASVDPKATSVTV 80
Query: 277 TSLEKFTEYAVAVAARTVNGLGRLSGKVTVKVKPEDVP 314
L Y + A G G+ S PE P
Sbjct: 81 KGLVPARSYQFRLCAVNDVGKGQFSKDTERVSLPESGP 118
>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM
related cell adhesion molecule, fibronectin type III
domain, structural genomics; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 127
Score = 59.7 bits (145), Expect = 3e-11
Identities = 19/94 (20%), Positives = 29/94 (30%), Gaps = 7/94 (7%)
Query: 9 TIELVWSQPTQTYGEILGYRV----KYGVREHTLKENLVNSKNMSFLITNLERGVEYEFR 64
+++L W+ I + + + V S + NL V Y FR
Sbjct: 32 SVQLSWTPGDDNNSPITKFIIEYEDAMHKPGLWHHQTEV-SGTQTTAQLNLSPYVNYSFR 90
Query: 65 IAGQNHIGYGQ--ETVRYYTTPEGPPTGPPANIS 96
+ N IG E Y T P P +
Sbjct: 91 VMAVNSIGKSLPSEASEQYLTKASEPDKNPTSGP 124
Score = 38.9 bits (91), Expect = 5e-04
Identities = 24/98 (24%), Positives = 34/98 (34%), Gaps = 10/98 (10%)
Query: 83 TPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQ-----IVLYNVKFHKKIDANNV 137
P PP ++ Q V ++W P N I+ Y HK ++
Sbjct: 12 PVYDVP-NPPFDLELTDQLDKSVQLSWTPG---DDNNSPITKFIIEYEDAMHKPGLWHHQ 67
Query: 138 IHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSP 175
+ TQT A NL + YS V A+ G S
Sbjct: 68 TEVSGTQTTAQ-LNLSPYVNYSFRVMAVNSIGKSLPSE 104
Score = 33.5 bits (77), Expect = 0.036
Identities = 24/137 (17%), Positives = 41/137 (29%), Gaps = 41/137 (29%)
Query: 188 APLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNI 247
P ++ D+SV++ W P I + I Y A+ W ++
Sbjct: 19 PPFDLELTDQLDKSVQLSWTPGDDNNSPITKFIIEYE-DAMHKPGLWHHQT--------- 68
Query: 248 ARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGR-----LSG 302
V T++ +L + Y+ V A VN +G+ S
Sbjct: 69 -------------------EVSGTQTTAQLNLSPYVNYSFRVMA--VNSIGKSLPSEASE 107
Query: 303 KVTVK-----VKPEDVP 314
+ K P P
Sbjct: 108 QYLTKASEPDKNPTSGP 124
Score = 32.3 bits (74), Expect = 0.10
Identities = 12/40 (30%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 296 GLGRLSGKVTVKVK-PEDVPLSLRAHDVSTHSMTLSWSPP 334
G SG V + P L D S+ LSW+P
Sbjct: 1 GSSGSSGPTPAPVYDVPNPPFDLELTDQLDKSVQLSWTPG 40
>3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor,
antibody FAB F immunoglobulin fold; HET: NAG; 1.95A
{Homo sapiens}
Length = 206
Score = 60.9 bits (147), Expect = 5e-11
Identities = 21/178 (11%), Positives = 47/178 (26%), Gaps = 20/178 (11%)
Query: 14 WSQPTQTYGEILGYRVKYGVREHTLKEN-------------LVNSKNMSFLITNLERGVE 60
WS T +++Y + L + + +
Sbjct: 22 WSTSTIQSLAESTLQLRYHRSSLYCSDIPSIHPISEPKDCYLQSDGFYECIFQPIFLLSG 81
Query: 61 YEFRIAGQNHIGYGQETVRYYTTPEGPPTGPPANISHHFQT-PDVVCITWDPPLRTHRNG 119
Y I + +G PP+++ ++ I+W+ P+ N
Sbjct: 82 YTMWIRINHSLGSLDSPPTCVLPDSVVKPLPPSSVKAEITINIGLLKISWEKPVFPENNL 141
Query: 120 QIVLYNVKFHKKIDANN---VIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWS 174
Q + +++ + + Y+ +V+ G G WS
Sbjct: 142 Q---FQIRYGLSGKEVQWKMYEVYDAKSKSVSLPVPDLCAVYAVQVRCKRLDGLGYWS 196
Score = 48.1 bits (114), Expect = 1e-06
Identities = 35/227 (15%), Positives = 65/227 (28%), Gaps = 49/227 (21%)
Query: 91 PPANIS--HHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKI-----------DANNV 137
NIS + C W + + +
Sbjct: 3 VNINISCETDGYLTKMTC-RWSTSTIQSLAESTLQLRYHRSSLYCSDIPSIHPISEPKDC 61
Query: 138 IHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTARDMVR--APLGVKAL 195
++ + +F + Y+ ++ G SP + +V+ P VKA
Sbjct: 62 YLQSDGFYECIFQPIFLLSGYTMWIRINHSLGSL-DSPPTCV-LPDSVVKPLPPSSVKAE 119
Query: 196 ATSDQS-VEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNIARIFYTM 254
T + +++ W+ P L +QI Y ++ E +W + +S
Sbjct: 120 ITINIGLLKISWEK-PVFPENNLQFQIRYGLSGKEV--QWKMYEVYDAKSK--------- 167
Query: 255 TAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLS 301
S L + YAV V + ++GLG S
Sbjct: 168 ------------------SVSLPVPDLCAVYAVQVRCKRLDGLGYWS 196
>2crz_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 110
Score = 58.1 bits (141), Expect = 6e-11
Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 5/103 (4%)
Query: 82 TTPEGPPTGPPANIS-HHFQTPDVVCITWDPPLRTHRNGQIVL-YNVKFHKKIDANNVIH 139
+ GPP GP + + W PPL G + Y+V+
Sbjct: 3 SGSSGPP-GPCLPPRLQGRPKAKEIQLRWGPPLVD--GGSPISCYSVEMSPIEKDEPREV 59
Query: 140 RNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTA 182
++ + S+L G YS ++A K G GP+S K + TA
Sbjct: 60 YQGSEVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTA 102
Score = 55.8 bits (135), Expect = 5e-10
Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 3/84 (3%)
Query: 9 TIELVWSQPTQTYG-EILGYRVKYGVREHTLKENLVNSKNMSFLITNLERGVEYEFRIAG 67
I+L W P G I Y V+ E + + +++L G Y FR+
Sbjct: 25 EIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQGSEVECTVSSLLPGKTYSFRLRA 84
Query: 68 QNHIGYGQ--ETVRYYTTPEGPPT 89
N +G+G E T P P+
Sbjct: 85 ANKMGFGPFSEKCDITTAPGSGPS 108
Score = 33.1 bits (76), Expect = 0.036
Identities = 20/128 (15%), Positives = 34/128 (26%), Gaps = 34/128 (26%)
Query: 188 APLGVKALATSDQSVEVWWK-PVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSN 246
P ++ + +++ W P+ G I Y + E S
Sbjct: 13 LPPRLQGRPKAK-EIQLRWGPPLVDGGSPISCYSV-----------EMSPIEK------- 53
Query: 247 IARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLSGKVTV 306
DE + ++SL Y+ + A G G S K +
Sbjct: 54 --------------DEPREVYQGSEVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDI 99
Query: 307 KVKPEDVP 314
P P
Sbjct: 100 TTAPGSGP 107
>3t04_D Monobody 7C12; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding, phosphoprotein;
2.10A {Homo sapiens}
Length = 103
Score = 56.7 bits (137), Expect = 2e-10
Identities = 18/98 (18%), Positives = 33/98 (33%), Gaps = 4/98 (4%)
Query: 88 PTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANNVIHRNT--TQT 145
+ P + TP + I+WD + Y + + + + V +
Sbjct: 7 VSSVPTKLEVVDATPTSLKISWDAY--YSSWQNVKYYRITYGETGGDSPVQEFTVPGYYS 64
Query: 146 KAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTAR 183
A S L+ G++Y+ V A PG + R
Sbjct: 65 TATISGLKPGVDYTITVYAYDTFFPGYEPNSPISINYR 102
Score = 56.3 bits (136), Expect = 2e-10
Identities = 15/123 (12%), Positives = 39/123 (31%), Gaps = 31/123 (25%)
Query: 188 APLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNI 247
P ++ + + S+++ W + + Y+I Y T + + ++P S
Sbjct: 10 VPTKLEVVDATPTSLKISWDAYYSSWQNVKYYRITYGETGGD--SPVQEFTVPGYYS--- 64
Query: 248 ARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLSGK-VTV 306
+A ++ L+ +Y + V A G +++
Sbjct: 65 -------------------------TATISGLKPGVDYTITVYAYDTFFPGYEPNSPISI 99
Query: 307 KVK 309
+
Sbjct: 100 NYR 102
Score = 53.6 bits (129), Expect = 2e-09
Identities = 13/68 (19%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYGV--REHTLKENLVNSKNMSFLITNLERGVEYEFRIA 66
++++ W ++ + YR+ YG + ++E V + I+ L+ GV+Y +
Sbjct: 23 SLKISWDAYYSSWQNVKYYRITYGETGGDSPVQEFTVPGYYSTATISGLKPGVDYTITVY 82
Query: 67 GQNHIGYG 74
+ G
Sbjct: 83 AYDTFFPG 90
Score = 34.7 bits (80), Expect = 0.009
Identities = 9/52 (17%), Positives = 14/52 (26%), Gaps = 6/52 (11%)
Query: 310 PEDVPLSLRAHDVSTHSMTLSWSPPIKLNP------VKYKEVSEKIQERRLQ 355
VP L D + S+ +SW + Y E +
Sbjct: 7 VSSVPTKLEVVDATPTSLKISWDAYYSSWQNVKYYRITYGETGGDSPVQEFT 58
>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like
modifier, S NOVO protein; 2.40A {Artificial gene}
Length = 97
Score = 56.2 bits (136), Expect = 2e-10
Identities = 18/98 (18%), Positives = 35/98 (35%), Gaps = 7/98 (7%)
Query: 88 PTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANNV--IHRNTTQT 145
+ P + TP + I+WD + + Y + + + + V + +
Sbjct: 4 VSSVPTKLEVVAATPTSLLISWDAS-----SSSVSYYRITYGETGGNSPVQEFTVPGSSS 58
Query: 146 KAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTAR 183
A S L G++Y+ V A +S S + R
Sbjct: 59 TATISGLSPGVDYTITVYAYYSYYDLYYSYSPSSINYR 96
Score = 48.5 bits (116), Expect = 1e-07
Identities = 16/123 (13%), Positives = 35/123 (28%), Gaps = 34/123 (27%)
Query: 188 APLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNI 247
P ++ +A + S+ + W + Y+I Y T + + SS+
Sbjct: 7 VPTKLEVVAATPTSLLISWDASS---SSVSYYRITYGETG----GNSPVQEFTVPGSSS- 58
Query: 248 ARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLSGK-VTV 306
+A ++ L +Y + V A S ++
Sbjct: 59 -------------------------TATISGLSPGVDYTITVYAYYSYYDLYYSYSPSSI 93
Query: 307 KVK 309
+
Sbjct: 94 NYR 96
Score = 46.6 bits (111), Expect = 5e-07
Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 5/71 (7%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYGV--REHTLKENLVNSKNMSFLITNLERGVEYEFRIA 66
++ + W + + YR+ YG ++E V + + I+ L GV+Y +
Sbjct: 20 SLLISWDASS---SSVSYYRITYGETGGNSPVQEFTVPGSSSTATISGLSPGVDYTITVY 76
Query: 67 GQNHIGYGQET 77
+
Sbjct: 77 AYYSYYDLYYS 87
Score = 32.7 bits (75), Expect = 0.039
Identities = 6/25 (24%), Positives = 9/25 (36%)
Query: 310 PEDVPLSLRAHDVSTHSMTLSWSPP 334
VP L + S+ +SW
Sbjct: 4 VSSVPTKLEVVAATPTSLLISWDAS 28
>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine,
ligand-receptor complex, signaling protein-cytokin; HET:
NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1
Length = 313
Score = 60.3 bits (145), Expect = 3e-10
Identities = 22/184 (11%), Positives = 46/184 (25%), Gaps = 19/184 (10%)
Query: 9 TIELVWSQPTQTYGEI---LGYRVKYGVREHTLKENLVNSK-----NMSFLITNLERGVE 60
++ W +T+ L G + L + S +L
Sbjct: 115 SLICQWEPGPETHLPTSFTLKSFKSRGNCQTQGDSILDCVPKDGQSHCSIPRKHLLLYQN 174
Query: 61 YEFRIAGQNHIGYGQETVRYYTTPEGPPTGPPANIS------HHFQTPDVVCITWDPPLR 114
+ +N +G + PP + + ++W+P
Sbjct: 175 MGIWVQAENALGTSMSPQLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQP 234
Query: 115 THRNGQIVLYNVKFHKKIDA---NNVIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPG 171
Q ++ + V + L Y+ +++ I PG
Sbjct: 235 GLHINQK--CELRHKPQRGEASWALVGPLPLEALQYELCGLLPATAYTLQIRCIRWPLPG 292
Query: 172 PWSP 175
WS
Sbjct: 293 HWSD 296
Score = 51.1 bits (121), Expect = 3e-07
Identities = 8/90 (8%), Positives = 21/90 (23%), Gaps = 9/90 (10%)
Query: 9 TIELVWSQPTQTYGEILGYRVKY---GVREHTLKENLVNSKNMSFLITNLERGVEYEFRI 65
++L W +++ + + + + + L Y +I
Sbjct: 224 CLQLSWEPWQPGLHINQKCELRHKPQRGEASWALVGPLPLEALQYELCGLLPATAYTLQI 283
Query: 66 AGQNHIGYGQ-----ETVRYYTTPEGPPTG 90
G ++ T E
Sbjct: 284 RCIRWPLPGHWSDWSPSL-ELRTTERAAAP 312
Score = 48.4 bits (114), Expect = 2e-06
Identities = 32/259 (12%), Positives = 58/259 (22%), Gaps = 46/259 (17%)
Query: 72 GYGQETVRYYTTPEGPPTGPPANISHHF-QTPDVVCITWDPPLRTHRNGQIVL-YNVKFH 129
G + + G P P N+S T + W+P TH L
Sbjct: 82 GNSLQILDQVELRAGYPPAIPHNLSCLMNLTTSSLICQWEPGPETHLPTSFTLKSFKSRG 141
Query: 130 KKIDANNVIHRNTTQTKAV-----FSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTARD 184
+ I + +L VQA G
Sbjct: 142 NCQTQGDSILDCVPKDGQSHCSIPRKHLLLYQNMGIWVQAENALGTSMSPQLCLDPMDVV 201
Query: 185 MVRAPLGVKALATSDQ------SVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKS 238
+ P+ + + +++ W+P G ++ + W+
Sbjct: 202 KLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLHINQKCELRHKPQ--RGEASWALVG 259
Query: 239 IPLTESSNIARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLG 298
E+ EL L T Y + + G
Sbjct: 260 PLPLEAL---------------------------QYELCGLLPATAYTLQIRCIRWPLPG 292
Query: 299 RL---SGKVTVKVKPEDVP 314
S + ++ E
Sbjct: 293 HWSDWSPSLELRT-TERAA 310
Score = 27.6 bits (60), Expect = 8.8
Identities = 18/113 (15%), Positives = 29/113 (25%), Gaps = 14/113 (12%)
Query: 252 YTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGR---LSGKVTVKV 308
T + + + K S L + + V A G L V
Sbjct: 142 NCQTQGDSILDCVPKDGQSHCSIPRKHLLLYQNMGIWVQAENALGTSMSPQLCLDPMDVV 201
Query: 309 KPE-----DVPLSLRAHDVSTHSMTLSWSPPIKLNP------VKYKEVSEKIQ 350
K E + S A + LSW P +++K +
Sbjct: 202 KLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLHINQKCELRHKPQRGEAS 254
>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 115
Score = 56.3 bits (136), Expect = 4e-10
Identities = 10/81 (12%), Positives = 20/81 (24%), Gaps = 3/81 (3%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYGVREHTLKENLVNSKNMSFLITNLERGVEYEFRIAGQ 68
L W P + Y ++ + + + + +L Y + G
Sbjct: 23 FAVLHWKPPQ---NPVDTYDIQVTAPGAPPLQAETPGSAVDYPLHDLVLHTNYTATVRGL 79
Query: 69 NHIGYGQETVRYYTTPEGPPT 89
+TT P
Sbjct: 80 RGPNLTSPASITFTTGLEAPR 100
Score = 50.5 bits (121), Expect = 4e-08
Identities = 20/141 (14%), Positives = 33/141 (23%), Gaps = 37/141 (26%)
Query: 188 APLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNI 247
P ++AL ++ + WKP + Y I T
Sbjct: 10 GPTQLRALNLTEGFAVLHWKPPQ---NPVDTYDIQVT----------------------- 43
Query: 248 ARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLSGKVTVK 307
++ L L T Y V + G S
Sbjct: 44 ---------APGAPPLQAETPGSAVDYPLHDLVLHTNYTATVRG--LRGPNLTSPASITF 92
Query: 308 VKPEDVPLSLRAHDVSTHSMT 328
+ P L A +V+ +
Sbjct: 93 TTGLEAPRDLEAKEVTPSGPS 113
Score = 45.5 bits (108), Expect = 2e-06
Identities = 14/112 (12%), Positives = 30/112 (26%), Gaps = 9/112 (8%)
Query: 91 PPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANNVIHRNTTQTKAVFS 150
P + T + W PP + Y+++ +
Sbjct: 10 GPTQLRALNLTEGFAVLHWKPP-----QNPVDTYDIQVTAPGAPPLQAETPGSAVDYPLH 64
Query: 151 NLEEGIEYSAEVQAITKAGPGPWSPKLSLMTARDMVRAPLGVKALATSDQSV 202
+L Y+A V+ + + T + AP ++A +
Sbjct: 65 DLVLHTNYTATVRGLRGPNLTSPASI----TFTTGLEAPRDLEAKEVTPSGP 112
Score = 33.2 bits (76), Expect = 0.041
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 305 TVKVKPEDVPLSLRAHDVSTHSMTLSWSPP 334
+ P D P LRA +++ L W PP
Sbjct: 3 SGSSGP-DGPTQLRALNLTEGFAVLHWKPP 31
>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 55.9 bits (135), Expect = 4e-10
Identities = 16/84 (19%), Positives = 26/84 (30%), Gaps = 3/84 (3%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYGVREHTLKENLVNSKNMSFLITNLERGVEYEFRIAGQ 68
T L W++P GY + + +E L+ S + L Y R+
Sbjct: 23 TALLTWTEPP---VRPAGYLLSFHTPGGQTQEILLPGGITSHQLLGLFPSTSYNARLQAM 79
Query: 69 NHIGYGQETVRYYTTPEGPPTGPP 92
+TT +GP
Sbjct: 80 WGQSLLPPVSTSFTTGGLRISGPS 103
Score = 47.1 bits (112), Expect = 4e-07
Identities = 17/82 (20%), Positives = 25/82 (30%), Gaps = 5/82 (6%)
Query: 91 PPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANNVIHRNTTQTKAVFS 150
P ++ TP +TW P + Y + FH I T
Sbjct: 10 APRDLEAKEVTPRTALLTWTEP-----PVRPAGYLLSFHTPGGQTQEILLPGGITSHQLL 64
Query: 151 NLEEGIEYSAEVQAITKAGPGP 172
L Y+A +QA+ P
Sbjct: 65 GLFPSTSYNARLQAMWGQSLLP 86
Score = 36.7 bits (85), Expect = 0.002
Identities = 16/119 (13%), Positives = 32/119 (26%), Gaps = 36/119 (30%)
Query: 188 APLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNI 247
AP ++A + ++ + W + GY + + + + +P +S
Sbjct: 10 APRDLEAKEVTPRTALLTWTE---PPVRPAGYLLSFHTPG----GQTQEILLPGGITS-- 60
Query: 248 ARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGR-LSGKVT 305
+L L T Y + A L +S T
Sbjct: 61 --------------------------HQLLGLFPSTSYNARLQAMWGQSLLPPVSTSFT 93
Score = 35.1 bits (81), Expect = 0.007
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 312 DVPLSLRAHDVSTHSMTLSWSPP 334
+ P L A +V+ + L+W+ P
Sbjct: 9 EAPRDLEAKEVTPRTALLTWTEP 31
>1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 120
Score = 56.0 bits (135), Expect = 5e-10
Identities = 23/120 (19%), Positives = 35/120 (29%), Gaps = 29/120 (24%)
Query: 196 ATSDQSVEVWWKPVPAGRGKILGYQIFY-TMTAVEDLDEWSQKSIPLTESSNIARIFYTM 254
+ +V+V W I GY++ Y + ++ W
Sbjct: 26 VLTPTTVQVTWTV-DRQPQFIQGYRVMYRQTSGLQATSSWQNLDAK-------------- 70
Query: 255 TAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLSGKVTVKVKPEDVP 314
VP SA L +L+K Y + V G S TV+ E P
Sbjct: 71 -------------VPTERSAVLVNLKKGVTYEIKVRPYFNEFQGMDSESKTVRTTEESGP 117
Score = 55.3 bits (133), Expect = 9e-10
Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 10/91 (10%)
Query: 9 TIELVWSQPTQTYGEILGYRVKY------GVREHTLKENLVNSKNMSFLITNLERGVEYE 62
T+++ W+ Q I GYRV Y + S ++ NL++GV YE
Sbjct: 31 TVQVTWTVDRQP-QFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVNLKKGVTYE 89
Query: 63 FRIAGQNHIGYGQE-TVRYYTTPE--GPPTG 90
++ + G + + T E GP +G
Sbjct: 90 IKVRPYFNEFQGMDSESKTVRTTEESGPSSG 120
Score = 44.5 bits (105), Expect = 6e-06
Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 3/87 (3%)
Query: 101 TPDVVCITWDPPLRTHR-NGQIVLYNVKFHKKIDANNVIH--RNTTQTKAVFSNLEEGIE 157
TP V +TW + G V+Y + ++ + T+ AV NL++G+
Sbjct: 28 TPTTVQVTWTVDRQPQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVNLKKGVT 87
Query: 158 YSAEVQAITKAGPGPWSPKLSLMTARD 184
Y +V+ G S ++ T +
Sbjct: 88 YEIKVRPYFNEFQGMDSESKTVRTTEE 114
>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III
repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 55.5 bits (134), Expect = 5e-10
Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 8/84 (9%)
Query: 9 TIELVWSQPTQTYG-EILGYRVKY-----GVREHTLKENLVNSKNMSFLITNLERGVEYE 62
T ++ + +P T G IL Y+ ++ V + S I L+ Y
Sbjct: 21 TAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYA 80
Query: 63 FRIAGQNHIGYGQ--ETVRYYTTP 84
R+A N G G+ + T P
Sbjct: 81 VRLAALNGKGLGEISAASEFKTQP 104
Score = 53.2 bits (128), Expect = 3e-09
Identities = 12/101 (11%), Positives = 25/101 (24%), Gaps = 11/101 (10%)
Query: 86 GPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKID-----ANNVIHR 140
P+ + +D P I+ Y ++ +
Sbjct: 8 SSPSIDQVEP-----YSSTAQVQFDEP-EATGGVPILKYKAEWRAVGEEVWHSKWYDAKE 61
Query: 141 NTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMT 181
+ + L+ Y+ + A+ G G S T
Sbjct: 62 ASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKT 102
Score = 44.3 bits (105), Expect = 5e-06
Identities = 24/123 (19%), Positives = 38/123 (30%), Gaps = 27/123 (21%)
Query: 188 APLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNI 247
+P + S + + +P G IL Y+ + + W K E+S
Sbjct: 9 SPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAV---GEEVWHSKWYDAKEASM- 64
Query: 248 ARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLSGKVTVK 307
+ L+ T YAV +AA GLG +S K
Sbjct: 65 -----------------------EGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFK 101
Query: 308 VKP 310
+P
Sbjct: 102 TQP 104
>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor
complex LIFR LIF, cytokine RE cytokine complex; HET: NAG
FUC MAN; 4.00A {Mus musculus}
Length = 488
Score = 60.0 bits (144), Expect = 6e-10
Identities = 34/242 (14%), Positives = 58/242 (23%), Gaps = 33/242 (13%)
Query: 64 RIAGQNHIGYGQETVRYYTTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVL 123
+G N I + V G P P +S + +W+P T G
Sbjct: 262 ENSGTNIIFITDDDVYGTVVFAGYPPDVPQKLSCETHDLKEIICSWNPGRITGLVGPRNT 321
Query: 124 -YNVKF---HKKIDANNVIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSL 179
Y + K + + + ++ + G + ++
Sbjct: 322 EYTLFESISGKSAVFHRIEGLTNETYRLGVQMHPGQEIHNFTLTGRNPLGQAQSAVVIN- 380
Query: 180 MTARDMVRAPLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSI 239
+T R P +K + V W L QI E +I
Sbjct: 381 VTERVAPHDPTSLKVKDINSTVVTFSWYLPGNFTKINLLCQIEI--CKANSKKEVRNATI 438
Query: 240 PLTESSNIARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGR 299
E S T + L +T Y V + +
Sbjct: 439 RGAEDS-------------------------TYHVAVDKLNPYTAYTFRVRCSS-KTFWK 472
Query: 300 LS 301
S
Sbjct: 473 WS 474
Score = 44.2 bits (103), Expect = 6e-05
Identities = 9/85 (10%), Positives = 18/85 (21%), Gaps = 8/85 (9%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYGVREHTLKENLVN-----SKNMSFLITNLERGVEYEF 63
+ W P L +++ + + L Y F
Sbjct: 402 VVTFSWYLPGNFTKINLLCQIEICKANSKKEVRNATIRGAEDSTYHVAVDKLNPYTAYTF 461
Query: 64 RI-AGQNHIGYGQE--TVRYYTTPE 85
R+ + + T E
Sbjct: 462 RVRCSSKTFWKWSRWSDEKRHLTTE 486
Score = 40.3 bits (93), Expect = 0.001
Identities = 40/345 (11%), Positives = 78/345 (22%), Gaps = 36/345 (10%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYGVREHTLKENLVNSKNMSFLITNLERGVEYEFRIAGQ 68
+ W P + + R H+ + + I L G ++E I
Sbjct: 19 VWDCTWPAPLGVSPGTV-KDICIKDRFHSC----HPLETTNVKIPALSPG-DHEVTINYL 72
Query: 69 NHIGYGQETVRYYTTPEGPPTGPPANISHHFQTP-DVVCITWDPPLRTHRNGQIVLYNVK 127
N G+ + P P + + + W+ + + +K
Sbjct: 73 N--GFQSKFTLNEKDVSLIP-ETPEILDLSADFFTSSLLLKWNDRGSALPHPSNATWEIK 129
Query: 128 FHKKIDANNVIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTARDMVR 187
+ V + + W+ L L A V
Sbjct: 130 VLQNPRTEPVALVL----------------LNTMLSGKDTVQHWNWTSDLPLQCATHSVS 173
Query: 188 APLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNI 247
+ + S W P+ + V + + I
Sbjct: 174 IRWHIDSPHFSGYKEWSDWSPLKNISWIRNTETNVFPQDKV----------VLAGSNMTI 223
Query: 248 ARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLSGKVTVK 307
+ T + + + L + + + G V
Sbjct: 224 CCMSPTKVLSGQIGNTLRPLIHLYGQTVAIHILNIPVSENSGTNIIFITDDDVYGTVVFA 283
Query: 308 VKPEDVPLSLRAHDVSTHSMTLSWSPPIKLNPVKYKEVSEKIQER 352
P DVP L + SW+P V + + E
Sbjct: 284 GYPPDVPQKLSCETHDLKEIICSWNPGRITGLVGPRNTEYTLFES 328
Score = 37.6 bits (86), Expect = 0.007
Identities = 18/159 (11%), Positives = 37/159 (23%), Gaps = 31/159 (19%)
Query: 188 APLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNI 247
P + + + W P + ++ + LT +
Sbjct: 289 VPQKLSCETHDLKEIICSWNPGRITGLVGPRNTEYTLFESISGKSAVFHRIEGLTNETYR 348
Query: 248 ARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLSGKVTVK 307
+ + + N LG+ V +
Sbjct: 349 LGVQM--------------------------HPGQEIHNFTLTG--RNPLGQAQSAVVIN 380
Query: 308 VK---PEDVPLSLRAHDVSTHSMTLSWSPPIKLNPVKYK 343
V P SL+ D+++ +T SW P +
Sbjct: 381 VTERVAPHDPTSLKVKDINSTVVTFSWYLPGNFTKINLL 419
Score = 28.4 bits (62), Expect = 4.9
Identities = 25/205 (12%), Positives = 58/205 (28%), Gaps = 39/205 (19%)
Query: 90 GPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANNVIHRNTTQTKAVF 149
++ V TW PL + ++ + ++ TT K
Sbjct: 5 DDDKDLKCTTNNMRVWDCTWPAPL---GVSPGTVKDICIKDR--FHSCHPLETTNVK--I 57
Query: 150 SNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTARDMVRAPLGVKALA----TSDQSVEVW 205
L G ++ + + + +D+ P + L S+ +
Sbjct: 58 PALSPG-DHEVTINYLNGFQSK------FTLNEKDVSLIPETPEILDLSADFFTSSLLLK 110
Query: 206 WK----PVPAGRGKILGYQIFY--------------TMTAVEDLDEWSQKS-IPLTESSN 246
W +P ++ ++ + + W+ S +PL +++
Sbjct: 111 WNDRGSALPHPSNATWEIKVLQNPRTEPVALVLLNTMLSGKDTVQHWNWTSDLPLQCATH 170
Query: 247 IARIFYTMTAVE--DLDEWSQKSVP 269
I + + + EWS S
Sbjct: 171 SVSIRWHIDSPHFSGYKEWSDWSPL 195
>4doh_R Interleukin-20 receptor subunit alpha; IL10 family cytokine
receptor complex, alpha helical cytokin beta sandwhich
receptor fold, signaling complex; HET: NAG; 2.80A {Homo
sapiens}
Length = 221
Score = 57.9 bits (139), Expect = 7e-10
Identities = 32/190 (16%), Positives = 56/190 (29%), Gaps = 18/190 (9%)
Query: 12 LVWSQPTQTYGEILGYRVKYGVREHTLKENLVNSKNMS-----FLITNLERGVEYEFRIA 66
L W+ P G + Y V+Y + N +N++ + +Y R+
Sbjct: 26 LQWTPPEGLQGVKVTYTVQYFIYGQKKWLNKSECRNINRTYCDLSAETSDYEHQYYARVR 85
Query: 67 GQNHIGYG--QETVRYYTTPEGPPTGPPANISHH-------FQTPDVVCITWDPPLRTHR 117
E+ R+Y E P ++ P+ + + +
Sbjct: 86 AIWGTKCSKWAESGRFYPFLETQIGPPEVALTTDEKSISVVLTAPEKWKRNPEDLPVSMQ 145
Query: 118 NGQIVL-YNVKFHKKIDANNVIHRNTTQTKAVFSNLEEGIEYSAEVQAITKA--GPGPWS 174
L YNV +N + T V + LE Y V++ S
Sbjct: 146 QIYSNLKYNVSVLNT-KSNRTWSQCVTNHTLVLTWLEPNTLYCVHVESFVPGPPRRAQPS 204
Query: 175 PKLSLMTARD 184
K T +D
Sbjct: 205 EKQCARTLKD 214
Score = 54.1 bits (129), Expect = 1e-08
Identities = 40/228 (17%), Positives = 71/228 (31%), Gaps = 31/228 (13%)
Query: 91 PPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANNV---IHRNTTQTKA 147
PANI+ V + W PP G V Y V++ + RN +T
Sbjct: 11 KPANITFLSINMKNV-LQWTPP--EGLQGVKVTYTVQYFIYGQKKWLNKSECRNINRTYC 67
Query: 148 VFSN--LEEGIEYSAEVQAITKAGPGPWSPKLSLMTARDMVRAPLGVKALATSDQSVEVW 205
S + +Y A V+AI W+ + P V L T ++S+ V
Sbjct: 68 DLSAETSDYEHQYYARVRAIWGTKCSKWAESGRFYPFLETQIGPPEVA-LTTDEKSISVV 126
Query: 206 WKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNIARIFYTMTAVEDLDEWSQ 265
+ + + +P++ + + Y ++ + +
Sbjct: 127 LTAPEK--------------------WKRNPEDLPVSMQQIYSNLKYNVSVLNTKSNRTW 166
Query: 266 KSVPLTESAELTSLEKFTEYAVAVAART--VNGLGRLSGKVTVKVKPE 311
+ LT LE T Y V V + + S K + +
Sbjct: 167 SQCVTNHTLVLTWLEPNTLYCVHVESFVPGPPRRAQPSEKQCARTLKD 214
>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK
protein, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.1.2.1
Length = 120
Score = 55.3 bits (133), Expect = 7e-10
Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 7/87 (8%)
Query: 9 TIELVWSQPTQTYGE-ILGYRVKYGVREHTLKEN----LVNSKNMSFLITNLERGVEYEF 63
+IEL W + + +++ + E K + + ++ LE Y+F
Sbjct: 31 SIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIYTGYATRHVVEGLEPRTLYKF 90
Query: 64 RIAGQNHIGYGQ--ETVRYYTTPEGPP 88
R+ + G + V TT E P
Sbjct: 91 RLKVTSPSGEYEYSPVVSVATTRESGP 117
Score = 54.2 bits (130), Expect = 2e-09
Identities = 21/115 (18%), Positives = 43/115 (37%), Gaps = 9/115 (7%)
Query: 74 GQETVRYYTTPEGPPTGPPA-NISHHFQTPDVVCITWDPPLRTHRNG---QIVLYNVKFH 129
+ P P P ++HH + + WD + R G Q + ++++
Sbjct: 5 SSGMEPHKVVPLSKPHPPVVGKVTHHS-----IELYWDLEQKEKRQGPQEQWLRFSIEEE 59
Query: 130 KKIDANNVIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTARD 184
+ + T+ V LE Y ++ + +G +SP +S+ T R+
Sbjct: 60 DPKMHSYGVIYTGYATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVATTRE 114
Score = 39.6 bits (92), Expect = 3e-04
Identities = 18/130 (13%), Positives = 32/130 (24%), Gaps = 29/130 (22%)
Query: 188 APLGVKALATSDQSVEV-WWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSN 246
P + S+E+ W R + ++ +E+ D
Sbjct: 18 KPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFS---IEEEDPKMH---------- 64
Query: 247 IARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLSGKVTV 306
+ + LE T Y + + +G S V+V
Sbjct: 65 ---------------SYGVIYTGYATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSV 109
Query: 307 KVKPEDVPLS 316
E P S
Sbjct: 110 ATTRESGPSS 119
Score = 35.7 bits (82), Expect = 0.006
Identities = 12/39 (30%), Positives = 14/39 (35%)
Query: 296 GLGRLSGKVTVKVKPEDVPLSLRAHDVSTHSMTLSWSPP 334
G SG KV P P V+ HS+ L W
Sbjct: 1 GSSGSSGMEPHKVVPLSKPHPPVVGKVTHHSIELYWDLE 39
>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type
III domain containing protein, cytoskeleton, muscle
contraction; NMR {Mus musculus} SCOP: b.1.2.1
Length = 111
Score = 55.1 bits (133), Expect = 9e-10
Identities = 20/110 (18%), Positives = 35/110 (31%), Gaps = 4/110 (3%)
Query: 82 TTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDAN--NVIH 139
+ GP P +++ T + W PP R G I Y V++ +
Sbjct: 3 SGSSGPT-SAPQHLTVEDVTDTTTTLKWRPPDRIG-AGGIDGYLVEYCLEGSEEWVPANK 60
Query: 140 RNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTARDMVRAP 189
+ +L G V + AG + L +T R+ +
Sbjct: 61 EPVERCGFTVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIRESGPSS 110
Score = 50.1 bits (120), Expect = 4e-08
Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 10/90 (11%)
Query: 9 TIELVWSQPTQTYG-EILGYRVKYGVREHTLKE----NLVNSKNMSFLITNLERGVEYEF 63
T L W P + I GY V+Y +E N + F + +L G F
Sbjct: 24 TTTLKWRPPDRIGAGGIDGYLVEY--CLEGSEEWVPANKEPVERCGFTVKDLPTGARILF 81
Query: 64 RIAGQNHIGYGQ--ETVRYYTTPE-GPPTG 90
R+ G N G + ++ T E GP +G
Sbjct: 82 RVVGVNIAGRSEPATLLQPVTIRESGPSSG 111
Score = 35.8 bits (83), Expect = 0.005
Identities = 24/124 (19%), Positives = 37/124 (29%), Gaps = 34/124 (27%)
Query: 188 APLGVKALATSDQSVEV-WWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSN 246
AP + +D + + W P G G I GY + Y +E +EW
Sbjct: 11 APQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEY---CLEGSEEWVP-----ANKEP 62
Query: 247 IARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLG---RLSGK 303
+ R +T V+DL V + G L
Sbjct: 63 VERCGFT---VKDLPTG-------------------ARILFRVVGVNIAGRSEPATLLQP 100
Query: 304 VTVK 307
VT++
Sbjct: 101 VTIR 104
Score = 33.1 bits (76), Expect = 0.036
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 310 PEDVPLSLRAHDVSTHSMTLSWSPP 334
P P L DV+ + TL W PP
Sbjct: 8 PTSAPQHLTVEDVTDTTTTLKWRPP 32
>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, cell adhesion; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 108
Score = 54.6 bits (131), Expect = 1e-09
Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 4/85 (4%)
Query: 9 TIELVWSQPTQTYGEILGYRVKY--GVREHTLKENLVNSKNMSFLITNLERGVEYEFRIA 66
+ L W P + GY ++ G + + + V L+ L + V YEFR+
Sbjct: 22 GVLLHWDPPELVPKRLDGYVLEGRQGSQGWEVLDPAVAGTETELLVPGLIKDVLYEFRLV 81
Query: 67 GQNHIGYGQ--ETVRYYTTPEGPPT 89
T T+ P+
Sbjct: 82 AFAGSFVSDPSNTANVSTSGLSGPS 106
Score = 52.2 bits (125), Expect = 8e-09
Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 5/99 (5%)
Query: 86 GPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANNVIHRNT--T 143
PP + +TP V + WDPP ++ Y ++ + V+ T
Sbjct: 5 SSGLSPPRGLVAV-RTPRGVLLHWDPP--ELVPKRLDGYVLEGRQGSQGWEVLDPAVAGT 61
Query: 144 QTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTA 182
+T+ + L + + Y + A + S ++ T+
Sbjct: 62 ETELLVPGLIKDVLYEFRLVAFAGSFVSDPSNTANVSTS 100
Score = 28.7 bits (64), Expect = 1.3
Identities = 21/129 (16%), Positives = 34/129 (26%), Gaps = 33/129 (25%)
Query: 189 PLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNIA 248
P G+ A+ T + V + W P ++ GY + + W
Sbjct: 11 PRGLVAVRTP-RGVLLHWDPPELVPKRLDGYVLEG----RQGSQGWEVLD---------- 55
Query: 249 RIFYTMTAVEDLDEWSQKSVPLTE-SAELTSLEKFTEYAVAVAARTVNGLGRLSGKVTVK 307
+V TE + L K Y + A + + S V
Sbjct: 56 -----------------PAVAGTETELLVPGLIKDVLYEFRLVAFAGSFVSDPSNTANVS 98
Query: 308 VKPEDVPLS 316
P S
Sbjct: 99 TSGLSGPSS 107
>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 108
Score = 54.3 bits (131), Expect = 1e-09
Identities = 15/88 (17%), Positives = 25/88 (28%), Gaps = 5/88 (5%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYGVREHT-LKENLVNSKNMSFLITNLERGVEYEFRIAG 67
+ W + RV Y E + S ++ L Y R+
Sbjct: 23 AARVFWEGAP---RPVRLVRVTYVSSEGGHSGQTEAPGNATSAMLGPLSSSTTYTVRVTC 79
Query: 68 QNHIGYGQETVRYYTTPEGP-PTGPPAN 94
G TT + P P+ P++
Sbjct: 80 LYPGGGSSTLTGRVTTKKAPSPSSGPSS 107
Score = 48.2 bits (115), Expect = 2e-07
Identities = 13/100 (13%), Positives = 26/100 (26%), Gaps = 14/100 (14%)
Query: 74 GQETVRYYTTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKID 133
G ++ PP ++ + D + W+ + L V +
Sbjct: 1 GSSG----SSGLAPPR----HLGFSDVSHDAARVFWEGA-----PRPVRLVRVTYVSSEG 47
Query: 134 AN-NVIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGP 172
+ T A+ L Y+ V + G
Sbjct: 48 GHSGQTEAPGNATSAMLGPLSSSTTYTVRVTCLYPGGGSS 87
Score = 47.4 bits (113), Expect = 4e-07
Identities = 24/134 (17%), Positives = 35/134 (26%), Gaps = 39/134 (29%)
Query: 188 APLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNI 247
P + S + V+W+ P + ++ Y
Sbjct: 10 PPRHLGFSDVSHDAARVFWEGAP---RPVRLVRVTYV----------------------- 43
Query: 248 ARIFYTMTAVEDLDEWSQKSVPLTE-SAELTSLEKFTEYAVAVAARTVNGLGR-LSGKVT 305
+ Q P SA L L T Y V V G L+G+VT
Sbjct: 44 ---------SSEGGHSGQTEAPGNATSAMLGPLSSSTTYTVRVTCLYPGGGSSTLTGRVT 94
Query: 306 VKVKPEDVPLSLRA 319
K P S +
Sbjct: 95 --TKKAPSPSSGPS 106
Score = 31.6 bits (72), Expect = 0.13
Identities = 6/25 (24%), Positives = 8/25 (32%)
Query: 310 PEDVPLSLRAHDVSTHSMTLSWSPP 334
P L DVS + + W
Sbjct: 7 GLAPPRHLGFSDVSHDAARVFWEGA 31
>1iar_B Protein (interleukin-4 receptor alpha chain); cytokine
receptor,interleukin-4, cytokine/receptor complex; 2.30A
{Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_B*
3bpn_B* 3bpo_B*
Length = 207
Score = 56.6 bits (136), Expect = 1e-09
Identities = 32/172 (18%), Positives = 57/172 (33%), Gaps = 15/172 (8%)
Query: 14 WSQPTQTYGE---ILGYRVKYGVREHT--LKENLVNSKNM-SFLITNLERGVEYEFRIAG 67
W T L Y++ + + E + EN + + L+ ++ Y +
Sbjct: 21 WKMNGPTNCSTELRLLYQLVFLLSEAHTCIPENNGGAGCVCHLLMDDVVSADNYTLDLWA 80
Query: 68 QNHIGYGQETVRYYTTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVL-YNV 126
+ + + E P N++ H D + +TW P L Y V
Sbjct: 81 GQQLLWKGS----FKPSEHVKPRAPGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAV 136
Query: 127 KFHKKIDANNV----IHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWS 174
+ D + + + S L+ GI Y A V+A +A WS
Sbjct: 137 NIWSENDPADFRIYNVTYLEPSLRIAASTLKSGISYRARVRAWAQAYNTTWS 188
Score = 33.5 bits (76), Expect = 0.078
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 303 KVTVKVKPEDVPLSLRAHDVSTHSMTLSWSPPIKLNPVKYKEVSEKIQERRLQK 356
K + VKP P +L H + ++ L+WS P + Y ++ +
Sbjct: 91 KPSEHVKP-RAPGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSEND 143
>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 105
Score = 53.2 bits (128), Expect = 3e-09
Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 7/86 (8%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYGV--REHTLKENLVNSKNMSFLITNLERGVEYEFRIA 66
++++ W+ P G +L Y + Y K V + +L+ +Y ++
Sbjct: 23 SLQVSWTPPL---GRVLHYWLTYAPASGLGPEKSVSVPGARSHVTLPDLQAATKYRVLVS 79
Query: 67 GQNHIGYGQETVRYYTT--PEGPPTG 90
G + T P GP +G
Sbjct: 80 AIYAAGRSEAVSATGQTACPSGPSSG 105
Score = 53.2 bits (128), Expect = 3e-09
Identities = 18/93 (19%), Positives = 38/93 (40%), Gaps = 8/93 (8%)
Query: 82 TTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANNVIHRN 141
++ PP+N++ +TPD + ++W PP G+++ Y + + +
Sbjct: 2 SSGSSGR-SPPSNLALASETPDSLQVSWTPP-----LGRVLHYWLTYAPASGLGPEKSVS 55
Query: 142 T--TQTKAVFSNLEEGIEYSAEVQAITKAGPGP 172
++ +L+ +Y V AI AG
Sbjct: 56 VPGARSHVTLPDLQAATKYRVLVSAIYAAGRSE 88
Score = 44.0 bits (104), Expect = 5e-06
Identities = 21/127 (16%), Positives = 39/127 (30%), Gaps = 34/127 (26%)
Query: 188 APLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNI 247
P + + + S++V W P G++L Y + Y + +KS+ + + +
Sbjct: 10 PPSNLALASETPDSLQVSWTPPL---GRVLHYWLTYAPAS----GLGPEKSVSVPGARS- 61
Query: 248 ARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLSGKVTVK 307
L L+ T+Y V V+A G T +
Sbjct: 62 -------------------------HVTLPDLQAATKYRVLVSAIYAAGRSEAV-SATGQ 95
Query: 308 VKPEDVP 314
P
Sbjct: 96 TACPSGP 102
Score = 31.6 bits (72), Expect = 0.11
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 310 PEDVPLSLRAHDVSTHSMTLSWSPP 334
P +L + S+ +SW+PP
Sbjct: 7 GRSPPSNLALASETPDSLQVSWTPP 31
>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 106
Score = 53.1 bits (128), Expect = 3e-09
Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 5/84 (5%)
Query: 9 TIELVWSQPTQTYGEILGYRVKY-GVREHTLKENLVNSKNMSFLITNLERGVEYEFRIAG 67
++ L W + Y ++Y + + + I L EY FR+
Sbjct: 23 SVTLTWDSGNS--EPVTYYGIQYRAAGTEGPFQEVDGVATTRYSIGGLSPFSEYAFRVLA 80
Query: 68 QNHIGYGQ--ETVRYYTTPEGPPT 89
N IG G E VR T + P+
Sbjct: 81 VNSIGRGPPSEAVRARTGEQSGPS 104
Score = 48.8 bits (117), Expect = 1e-07
Identities = 20/102 (19%), Positives = 34/102 (33%), Gaps = 6/102 (5%)
Query: 82 TTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANNV-IHR 140
++ P PP ++ T V +TWD + + Y +++
Sbjct: 2 SSGSSGP-KPPIDLVVTETTATSVTLTWDSG----NSEPVTYYGIQYRAAGTEGPFQEVD 56
Query: 141 NTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTA 182
T+ L EY+ V A+ G GP S + T
Sbjct: 57 GVATTRYSIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRARTG 98
Score = 38.8 bits (91), Expect = 3e-04
Identities = 22/127 (17%), Positives = 33/127 (25%), Gaps = 33/127 (25%)
Query: 188 APLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNI 247
P+ + T+ SV + W + Y I Y E
Sbjct: 10 PPIDLVVTETTATSVTLTWDS--GNSEPVTYYGIQYRAAGTEG----------------- 50
Query: 248 ARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLSGKVTVK 307
+ + T + L F+EYA V A G G S V +
Sbjct: 51 --------------PFQEVDGVATTRYSIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRAR 96
Query: 308 VKPEDVP 314
+ P
Sbjct: 97 TGEQSGP 103
Score = 30.3 bits (69), Expect = 0.37
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 312 DVPLSLRAHDVSTHSMTLSWSPP 334
P+ L + + S+TL+W
Sbjct: 9 KPPIDLVVTETTATSVTLTWDSG 31
>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative
splicing, cell adhesion, coiled coil, EGF-like domain,
extracellular matrix; 2.40A {Homo sapiens}
Length = 100
Score = 52.8 bits (127), Expect = 4e-09
Identities = 25/92 (27%), Positives = 33/92 (35%), Gaps = 10/92 (10%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYGVREHTLKENLVN--SKNMSFLITNLERGVEYEFRIA 66
T + W P I G V +G + E V+ S S +TNLE YE RI
Sbjct: 17 TAVVTWQPPI---LPIEGILVTFGRKNDPSDETTVDLTSSITSLTLTNLEPNTTYEIRIV 73
Query: 67 GQNHIGYGQETVRYYTTPEGPPTGPPANISHH 98
+N Y +TT + HH
Sbjct: 74 ARNGQQYSPPVSTTFTT-----GSLEHHHHHH 100
Score = 43.9 bits (104), Expect = 6e-06
Identities = 21/86 (24%), Positives = 29/86 (33%), Gaps = 7/86 (8%)
Query: 91 PPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDAN--NVIHRNTTQTKAV 148
PP NI T +TW PP I V F +K D + + ++ T
Sbjct: 4 PPFNIKVTNITLTTAVVTWQPP-----ILPIEGILVTFGRKNDPSDETTVDLTSSITSLT 58
Query: 149 FSNLEEGIEYSAEVQAITKAGPGPWS 174
+NLE Y + A P
Sbjct: 59 LTNLEPNTTYEIRIVARNGQQYSPPV 84
Score = 43.5 bits (103), Expect = 8e-06
Identities = 21/122 (17%), Positives = 34/122 (27%), Gaps = 34/122 (27%)
Query: 185 MVRAPLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTES 244
M++ P +K + + V W+P I G + +
Sbjct: 1 MLQPPFNIKVTNITLTTAVVTWQPPIL---PIEGILVTFGRKNDPS-------------- 43
Query: 245 SNIARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGR-LSGK 303
DE + S LT+LE T Y + + AR +S
Sbjct: 44 ----------------DETTVDLTSSITSLTLTNLEPNTTYEIRIVARNGQQYSPPVSTT 87
Query: 304 VT 305
T
Sbjct: 88 FT 89
Score = 33.9 bits (78), Expect = 0.015
Identities = 4/23 (17%), Positives = 13/23 (56%)
Query: 312 DVPLSLRAHDVSTHSMTLSWSPP 334
P +++ +++ + ++W PP
Sbjct: 3 QPPFNIKVTNITLTTAVVTWQPP 25
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 56.7 bits (137), Expect = 4e-09
Identities = 18/91 (19%), Positives = 35/91 (38%), Gaps = 7/91 (7%)
Query: 9 TIELVWSQPTQTYG-EILGYRVKYGVREHTLKE--NLVNSKNMSFLITNLERGVEYEFRI 65
++ L W++P G +I Y V+ T + + ++ + + NL Y+FR+
Sbjct: 214 SVNLTWTEPASDGGSKITNYIVEK--CATTAERWLRVGQARETRYTVINLFGKTSYQFRV 271
Query: 66 AGQNHIGYGQ--ETVRYYTTPEGPPTGPPAN 94
+N G + E T E +
Sbjct: 272 IAENKFGLSKPSEPSEPTITKEDKTRAMNYD 302
Score = 42.4 bits (100), Expect = 2e-04
Identities = 24/143 (16%), Positives = 41/143 (28%), Gaps = 4/143 (2%)
Query: 50 FLITNLERGVEYEFRIAGQNHIGYGQETVRYYTTPEGPPTGPPANISHHFQTPDVVCITW 109
+ER + + +N +G + P PP + + D V +TW
Sbjct: 163 VFPNGVERKDAGFYVVCAKN--RFGIDQKTVELDVADVP-DPPRGVKVSDVSRDSVNLTW 219
Query: 110 DPPLRTHRNGQIVLYNVKFHKKIDANNVIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAG 169
P +I Y V+ + +T+ NL Y V A K G
Sbjct: 220 TEPASDG-GSKITNYIVEKCATTAERWLRVGQARETRYTVINLFGKTSYQFRVIAENKFG 278
Query: 170 PGPWSPKLSLMTARDMVRAPLGV 192
S ++ +
Sbjct: 279 LSKPSEPSEPTITKEDKTRAMNY 301
Score = 36.7 bits (85), Expect = 0.010
Identities = 24/128 (18%), Positives = 34/128 (26%), Gaps = 33/128 (25%)
Query: 188 APLGVKALATSDQSVEVWWK-PVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSN 246
P GVK S SV + W P G KI Y + + +
Sbjct: 201 PPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEK----------CATTA-------- 242
Query: 247 IARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLSGKVTV 306
+ W + + +L T Y V A GL + S
Sbjct: 243 --------------ERWLRVGQARETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPSEP 288
Query: 307 KVKPEDVP 314
+ ED
Sbjct: 289 TITKEDKT 296
Score = 36.3 bits (84), Expect = 0.014
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 291 ARTVNGLGRLSGKVTVKVKPEDVPLSLRAHDVSTHSMTLSWSPP 334
A+ G+ + + ++ V P D P ++ DVS S+ L+W+ P
Sbjct: 180 AKNRFGIDQKTVELDVADVP-DPPRGVKVSDVSRDSVNLTWTEP 222
>2erj_C Cytokine receptor common gamma chain; immune system-cytok complex;
HET: NAG FUC BMA; 3.00A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1
Length = 247
Score = 54.8 bits (131), Expect = 9e-09
Identities = 29/239 (12%), Positives = 57/239 (23%), Gaps = 37/239 (15%)
Query: 63 FRIAGQNHIGYGQETVRYYTTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIV 122
G T T P + + + TW +
Sbjct: 11 LTPNGNEDTTADFFLTTMPTDSLSVSTLPLPEVQCFVFNVEYMNCTWQSSSEPQPTNLTL 70
Query: 123 LYNVKF---HKKIDANNVIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSL 179
Y K K ++ + + E + + VQ P + ++
Sbjct: 71 HYWYKNSDNDKVQKCSHYLFSEEITSGCQLQKKEIHLYQTFVVQLQDPREPRRQATQMLK 130
Query: 180 MTARDMVRAPLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSI 239
+ + AP + S+ +E+ W L + + Y
Sbjct: 131 LQNLVIPWAPENLTLHKLSESQLELNWNNRF--LNHCLEHLVQYR--------------- 173
Query: 240 PLTESSNIARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLG 298
+ W+++SV L S++ Y V +R G
Sbjct: 174 -----------------TDWDHSWTEQSVDYRHKFSLPSVDGQKRYTFRVRSRFNPLCG 215
Score = 52.9 bits (126), Expect = 4e-08
Identities = 18/174 (10%), Positives = 49/174 (28%), Gaps = 12/174 (6%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYGVREHTLKE-----NLVNSKNMSFLITNLERGVEYEF 63
+ W ++ L Y ++ + + E + F
Sbjct: 52 YMNCTWQSSSEPQPTNLTLHYWYKNSDNDKVQKCSHYLFSEEITSGCQLQKKEIHLYQTF 111
Query: 64 RIAGQNHIGYGQETVRYYTTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVL 123
+ Q+ ++ + P N++ H + + + W+ H +
Sbjct: 112 VVQLQDPREPRRQATQMLKLQNLVIPWAPENLTLHKLSESQLELNWNNRFLNH----CLE 167
Query: 124 YNVKFHKKIDANNVIHRNTTQTKAVFSNLEEGIEYSAEVQAITK---AGPGPWS 174
+ V++ D + + K +++ Y+ V++ WS
Sbjct: 168 HLVQYRTDWDHSWTEQSVDYRHKFSLPSVDGQKRYTFRVRSRFNPLCGSAQHWS 221
Score = 39.4 bits (91), Expect = 0.001
Identities = 13/96 (13%), Positives = 29/96 (30%), Gaps = 9/96 (9%)
Query: 10 IELVWSQPTQTYGEILGYRVKYGVREHTLKENLVNSKNMSFLITNLERGVEYEFRIAGQN 69
+EL W+ + L + V+Y F + +++ Y FR+ +
Sbjct: 153 LELNWNNRFLNH--CLEHLVQYRTDWDHSWTEQSVDYRHKFSLPSVDGQKRYTFRVRSRF 210
Query: 70 HIGYGQET-------VRYYTTPEGPPTGPPANISHH 98
+ G ++ + + HH
Sbjct: 211 NPLCGSAQHWSEWSHPIHWGSNTSKENPRTGHHHHH 246
>3k2m_C Monobody HA4; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding, phosphoprotein;
1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A
1fna_A
Length = 101
Score = 51.3 bits (123), Expect = 1e-08
Identities = 17/122 (13%), Positives = 37/122 (30%), Gaps = 31/122 (25%)
Query: 188 APLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNI 247
P ++ +A + S+ + W P + Y+I Y T + + SS+
Sbjct: 7 VPTKLEVVAATPTSLLISWDA-PMSSSSVYYYRITYGETG----GNSPVQEFTVPYSSS- 60
Query: 248 ARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLSGKVTVK 307
+A ++ L +Y + V A + G + +
Sbjct: 61 -------------------------TATISGLSPGVDYTITVYAWGEDSAGYMFMYSPIS 95
Query: 308 VK 309
+
Sbjct: 96 IN 97
Score = 50.5 bits (121), Expect = 3e-08
Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 5/90 (5%)
Query: 88 PTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANNV--IHRNTTQT 145
+ P + TP + I+WD P+ + + Y + + + + V + +
Sbjct: 4 VSSVPTKLEVVAATPTSLLISWDAPMS---SSSVYYYRITYGETGGNSPVQEFTVPYSSS 60
Query: 146 KAVFSNLEEGIEYSAEVQAITKAGPGPWSP 175
A S L G++Y+ V A + G
Sbjct: 61 TATISGLSPGVDYTITVYAWGEDSAGYMFM 90
Score = 47.5 bits (113), Expect = 3e-07
Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 3/71 (4%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYGV--REHTLKENLVNSKNMSFLITNLERGVEYEFRIA 66
++ + W P + + YR+ YG ++E V + + I+ L GV+Y +
Sbjct: 20 SLLISWDAPMSS-SSVYYYRITYGETGGNSPVQEFTVPYSSSTATISGLSPGVDYTITVY 78
Query: 67 GQNHIGYGQET 77
G
Sbjct: 79 AWGEDSAGYMF 89
Score = 34.0 bits (78), Expect = 0.017
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 312 DVPLSLRAHDVSTHSMTLSWSPPIKLNPVKY 342
VP L + S+ +SW P+ + V Y
Sbjct: 6 SVPTKLEVVAATPTSLLISWDAPMSSSSVYY 36
>1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic
cytokine, cytokine receptor class 1, complex
(cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A
Length = 227
Score = 54.3 bits (130), Expect = 1e-08
Identities = 33/194 (17%), Positives = 53/194 (27%), Gaps = 21/194 (10%)
Query: 9 TIELVWSQPTQTYGEILGYRVKY-----GVREHTLKENLVNSKNM----SFLITNLERGV 59
+ W + Y Y + L + + S + V
Sbjct: 36 DLVCFWEEAASAGVGPGQYSFSYQLEDEPWKLCRLHQAPTARGAVRFWCSLPTADTSSFV 95
Query: 60 EYEFRIAGQNHIGYGQETVRYYTTPEGPPTGPPANISHHFQ-TPDVVCITWDPPLRTHRN 118
E R+ + + P + V + W PP T
Sbjct: 96 PLELRVTAASGAPRYHRVIHINEVV---LLDAPVGLVARLADESGHVVLRWLPPPETPMT 152
Query: 119 GQIVLYNVKFHKKIDANNV--IHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGP-----G 171
I Y V A +V + +T+ V SNL Y+ V+A
Sbjct: 153 SHI-RYEVDVSAGQGAGSVQRVEILEGRTECVLSNLRGRTRYTFAVRARMAEPSFGGFWS 211
Query: 172 PWSPKLSLMTARDM 185
WS +SL+T D+
Sbjct: 212 EWSEPVSLLTPSDL 225
Score = 36.2 bits (83), Expect = 0.011
Identities = 24/221 (10%), Positives = 57/221 (25%), Gaps = 42/221 (19%)
Query: 82 TTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANN----- 136
+ P + + + + W+ Y+ + + +
Sbjct: 14 SKAALLAARGPEELLCFTERLEDLVCFWEEA--ASAGVGPGQYSFSYQLEDEPWKLCRLH 71
Query: 137 --VIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTARDMVRAPLGVKA 194
R + + E++ +G + + + ++ AP+G+ A
Sbjct: 72 QAPTARGAVRFWCSLPTADTSSFVPLELRVTAASGAPRYHRVIHINE-VVLLDAPVGLVA 130
Query: 195 LATSDQS-VEV-WWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNIARIFY 252
+ V + W P + Y++ + S + + + E
Sbjct: 131 RLADESGHVVLRWLPPPETPMTSHIRYEVDVS----AGQGAGSVQRVEILEGRT------ 180
Query: 253 TMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAART 293
L++L T Y AV AR
Sbjct: 181 --------------------ECVLSNLRGRTRYTFAVRARM 201
Score = 33.9 bits (77), Expect = 0.066
Identities = 19/138 (13%), Positives = 36/138 (26%), Gaps = 25/138 (18%)
Query: 198 SDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNIARIFYTMTAV 257
+ + +W+ + Y Y L++ K L ++
Sbjct: 33 RLEDLVCFWEEAASAGVGPGQYSFSYQ------LEDEPWKLCRLHQAP-----------T 75
Query: 258 EDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLSGKVTVKVKPEDVPLSL 317
S+P + F + V A + + V + P+ L
Sbjct: 76 ARGAVRFWCSLPTAD------TSSFVPLELRVTAASGAPRYHRVIHINEVVLLDA-PVGL 128
Query: 318 RAHDVSTHS-MTLSWSPP 334
A + L W PP
Sbjct: 129 VARLADESGHVVLRWLPP 146
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 53.7 bits (129), Expect = 1e-08
Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 8/84 (9%)
Query: 9 TIELVWSQPTQTYG-EILGYRVKY-----GVREHTLKENLVNSKNMSFLITNLERGVEYE 62
T ++ + +P T G IL Y+ ++ V + S I L+ Y
Sbjct: 128 TAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYA 187
Query: 63 FRIAGQNHIGYGQ--ETVRYYTTP 84
R+A N G G+ + T P
Sbjct: 188 VRLAALNGKGLGEISAASEFKTQP 211
Score = 43.7 bits (103), Expect = 4e-05
Identities = 19/145 (13%), Positives = 36/145 (24%), Gaps = 13/145 (8%)
Query: 44 NSKNMSFL-ITNLERGVEYEFRIAGQNHIGYGQETVR-YYTTPEGPPTGPPANISHHFQT 101
N+ + S+L +T + N IG P+
Sbjct: 71 NTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSSPSIDQVEPYSST-- 128
Query: 102 PDVVCITWDPPLRTHRNGQIVLYNVKFHKK-----IDANNVIHRNTTQTKAVFSNLEEGI 156
+ +D P I+ Y ++ + + L+
Sbjct: 129 ---AQVQFDEP-EATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPET 184
Query: 157 EYSAEVQAITKAGPGPWSPKLSLMT 181
Y+ + A+ G G S T
Sbjct: 185 TYAVRLAALNGKGLGEISAASEFKT 209
Score = 40.2 bits (94), Expect = 6e-04
Identities = 23/123 (18%), Positives = 36/123 (29%), Gaps = 27/123 (21%)
Query: 188 APLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNI 247
+P + S + + +P G IL Y+ + + W K E
Sbjct: 116 SPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWR---AVGEEVWHSKWYDAKE---- 168
Query: 248 ARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLSGKVTVK 307
+ + L T YAV +AA GLG +S K
Sbjct: 169 -ASMEGIVTIVGLKPE-------------------TTYAVRLAALNGKGLGEISAASEFK 208
Query: 308 VKP 310
+P
Sbjct: 209 TQP 211
Score = 29.4 bits (66), Expect = 1.9
Identities = 5/40 (12%), Positives = 15/40 (37%)
Query: 295 NGLGRLSGKVTVKVKPEDVPLSLRAHDVSTHSMTLSWSPP 334
N +G+ S + + S+ + + + + + P
Sbjct: 97 NRIGQESLEFILVQADTPSSPSIDQVEPYSSTAQVQFDEP 136
>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus
design, S de novo protein; HET: DIO; 1.00A {Synthetic}
Length = 98
Score = 50.9 bits (122), Expect = 2e-08
Identities = 25/92 (27%), Positives = 32/92 (34%), Gaps = 12/92 (13%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYGV--REHTLKENLVNSKNMSFLITNLERGVEYEFRIA 66
+I + W+ P+ I GYR+ Y KE V + S IT L GVEY +
Sbjct: 17 SITVSWTPPS---ATITGYRITYTPSNGPGEPKELTVPPSSTSVTITGLTPGVEYVVSVY 73
Query: 67 GQNHIGYGQETVRYYTTPEGPPTGPPANISHH 98
V TT G HH
Sbjct: 74 ALKDNQESPPLVGTQTT--GGHHHH-----HH 98
Score = 44.3 bits (105), Expect = 4e-06
Identities = 15/85 (17%), Positives = 28/85 (32%), Gaps = 7/85 (8%)
Query: 90 GPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDAN--NVIHRNTTQTKA 147
P ++ T + ++W PP + I Y + + + + T
Sbjct: 3 DAPTDLQVTNVTDTSITVSWTPP-----SATITGYRITYTPSNGPGEPKELTVPPSSTSV 57
Query: 148 VFSNLEEGIEYSAEVQAITKAGPGP 172
+ L G+EY V A+ P
Sbjct: 58 TITGLTPGVEYVVSVYALKDNQESP 82
Score = 42.0 bits (99), Expect = 2e-05
Identities = 29/123 (23%), Positives = 41/123 (33%), Gaps = 36/123 (29%)
Query: 185 MVRAPLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTES 244
M+ AP ++ +D S+ V W P I GY+I YT +
Sbjct: 1 MLDAPTDLQVTNVTDTSITVSWTPPS---ATITGYRITYTPSNGP--------------- 42
Query: 245 SNIARIFYTMTAVEDLDEWSQKSVPLTE-SAELTSLEKFTEYAVAVAARTVNGLGR-LSG 302
E + +VP + S +T L EY V+V A N L G
Sbjct: 43 ----------------GEPKELTVPPSSTSVTITGLTPGVEYVVSVYALKDNQESPPLVG 86
Query: 303 KVT 305
T
Sbjct: 87 TQT 89
Score = 32.8 bits (75), Expect = 0.045
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 312 DVPLSLRAHDVSTHSMTLSWSPP 334
D P L+ +V+ S+T+SW+PP
Sbjct: 3 DAPTDLQVTNVTDTSITVSWTPP 25
>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 124
Score = 51.2 bits (123), Expect = 2e-08
Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 9/90 (10%)
Query: 9 TIELVWSQPTQTYGEILGYRVKY-------GVREHTLKENLVNSKNMSFLITNLERGVEY 61
++ L + I + V+ G + + S + +L Y
Sbjct: 33 SVTLQFRPGYDGKTSISRWLVEAQVGVVGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCY 92
Query: 62 EFRIAGQNHIGYGQ--ETVRYYTTPEGPPT 89
FR+ N +G + R T + P+
Sbjct: 93 SFRMRQVNIVGTSPPSQPSRKIQTLQSGPS 122
Score = 43.1 bits (102), Expect = 2e-05
Identities = 23/131 (17%), Positives = 42/131 (32%), Gaps = 27/131 (20%)
Query: 169 GPGPWSPKLSLMTARDMVRAPLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAV 228
G S +S ++ P + +SV + ++P G+ I + + + V
Sbjct: 1 GSSGSSGTISSGVPPELPGPPTNLGISNIGPRSVTLQFRPGYDGKTSISRWLVEAQVGVV 60
Query: 229 EDLDEWSQKSIPLTESSNIARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVA 288
+ +EW + L P S E+ L FT Y+
Sbjct: 61 GEGEEW--------------------LLIHQLSN-----EPDARSMEVPDLNPFTCYSFR 95
Query: 289 VAARTVNGLGR 299
+ VN +G
Sbjct: 96 MRQ--VNIVGT 104
Score = 36.2 bits (84), Expect = 0.005
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 296 GLGRLSGKVTVKVKPE--DVPLSLRAHDVSTHSMTLSWSPP 334
G SG ++ V PE P +L ++ S+TL + P
Sbjct: 1 GSSGSSGTISSGVPPELPGPPTNLGISNIGPRSVTLQFRPG 41
>2crm_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 51.3 bits (123), Expect = 2e-08
Identities = 18/89 (20%), Positives = 30/89 (33%), Gaps = 9/89 (10%)
Query: 9 TIELVWSQPTQTYG-EILGYRVKYGVREHTLKEN---LVNSKNMSFLITNLERGVEYEFR 64
+ ++ W P G I Y V+ E + + + L L G Y R
Sbjct: 34 SFKITWDPPKDNGGATINKYVVEM--AEGSNGNKWEMIYSGATREHLCDRLNPGCFYRLR 91
Query: 65 IAGQNHIGYGQ--ETVRYYTTPE-GPPTG 90
+ + G E++ T GP +G
Sbjct: 92 VYCISDGGQSAVSESLLVQTPAVSGPSSG 120
Score = 49.4 bits (118), Expect = 9e-08
Identities = 25/109 (22%), Positives = 36/109 (33%), Gaps = 7/109 (6%)
Query: 76 ETVRYYTTPE--GPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKID 133
V + T P+ G P P ITWDPP I Y V+ + +
Sbjct: 7 GVVEFTTCPDKPGIPVKPSVKGK---IHSHSFKITWDPPKDNG-GATINKYVVEMAEGSN 62
Query: 134 ANN-VIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMT 181
N + + + + L G Y V I+ G S L + T
Sbjct: 63 GNKWEMIYSGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQT 111
Score = 37.0 bits (86), Expect = 0.002
Identities = 23/149 (15%), Positives = 38/149 (25%), Gaps = 35/149 (23%)
Query: 169 GPGPWSPKLSLMTARDMVRAPLGVKALA-TSDQSVEVWWKPVPA--GRGKILGYQIFYTM 225
G S + T D P+ S ++ W P P G I Y +
Sbjct: 1 GSSGSSGVVEFTTCPDKPGIPVKPSVKGKIHSHSFKITWDP-PKDNGGATINKYVV---- 55
Query: 226 TAVEDLDEWSQKSIPLTESSNIARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEY 285
E ++ S + ++W T L Y
Sbjct: 56 -------EMAEGS--------------------NGNKWEMIYSGATREHLCDRLNPGCFY 88
Query: 286 AVAVAARTVNGLGRLSGKVTVKVKPEDVP 314
+ V + G +S + V+ P
Sbjct: 89 RLRVYCISDGGQSAVSESLLVQTPAVSGP 117
Score = 29.3 bits (66), Expect = 1.1
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 304 VTVKVKPEDVPLSLR-AHDVSTHSMTLSWSPP 334
T KP +P+ + +HS ++W PP
Sbjct: 12 TTCPDKP-GIPVKPSVKGKIHSHSFKITWDPP 42
>2b5i_C Cytokine receptor common gamma chain; four-helix bundle,
fibronectin domain, cytokine-cytokine REC complex; HET:
NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB:
3bpl_C* 3qb7_C* 3qaz_C*
Length = 199
Score = 52.4 bits (125), Expect = 4e-08
Identities = 18/174 (10%), Positives = 49/174 (28%), Gaps = 12/174 (6%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYGVREHTLKE-----NLVNSKNMSFLITNLERGVEYEF 63
+ W ++ L Y ++ + + E + F
Sbjct: 14 YMNCTWQSSSEPQPTNLTLHYWYKNSDNDKVQKCSHYLFSEEITSGCQLQKKEIHLYQTF 73
Query: 64 RIAGQNHIGYGQETVRYYTTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVL 123
+ Q+ ++ + P N++ H + + + W+ H +
Sbjct: 74 VVQLQDPREPRRQATQMLKLQNLVIPWAPENLTLHKLSESQLELNWNNRFLNH----CLE 129
Query: 124 YNVKFHKKIDANNVIHRNTTQTKAVFSNLEEGIEYSAEVQAITK---AGPGPWS 174
+ V++ D + + K +++ Y+ V++ WS
Sbjct: 130 HLVQYRTDWDHSWTEQSVDYRHKFSLPSVDGQKRYTFRVRSRFNPLCGSAQHWS 183
Score = 47.4 bits (112), Expect = 2e-06
Identities = 28/209 (13%), Positives = 54/209 (25%), Gaps = 46/209 (22%)
Query: 102 PDVVCI---------TWDPPLRTHRNGQIVLYNVKF---HKKIDANNVIHRNTTQTKAVF 149
P+V C TW + Y K K ++ + +
Sbjct: 3 PEVQCFVFNVEYMNCTWQSSSEPQPTNLTLHYWYKNSDNDKVQKCSHYLFSEEITSGCQL 62
Query: 150 SNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTARDMVRAPLGVKALATSDQSVEVWWKPV 209
E + + VQ P + ++ + + AP + S+ +E+ W
Sbjct: 63 QKKEIHLYQTFVVQLQDPREPRRQATQMLKLQNLVIPWAPENLTLHKLSESQLELNWN-- 120
Query: 210 PAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNIARIFYTMTAVEDLDEWSQKSVP 269
L + + Y + W+++SV
Sbjct: 121 NRFLNHCLEHLVQYR--------------------------------TDWDHSWTEQSVD 148
Query: 270 LTESAELTSLEKFTEYAVAVAARTVNGLG 298
L S++ Y V +R G
Sbjct: 149 YRHKFSLPSVDGQKRYTFRVRSRFNPLCG 177
>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW-
type protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 110
Score = 50.4 bits (121), Expect = 4e-08
Identities = 19/88 (21%), Positives = 30/88 (34%), Gaps = 6/88 (6%)
Query: 9 TIELVWSQPTQTYG-EILGYRVKY--GVREHTLKENLVNSKNMSFLITNLERGVEYEFRI 65
T+ + W P + GY ++Y E + N F IT L + R+
Sbjct: 23 TVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDKTKFTITGLPTDAKIFVRV 82
Query: 66 AGQNHIGYGQ--ETVRYYTTPE-GPPTG 90
N G + + E GP +G
Sbjct: 83 KAVNAAGASEPKYYSQPILVKESGPSSG 110
Score = 50.0 bits (120), Expect = 4e-08
Identities = 15/110 (13%), Positives = 35/110 (31%), Gaps = 4/110 (3%)
Query: 82 TTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDAN--NVIH 139
++ PP ++ T V + W PP + Y +++ + +
Sbjct: 2 SSGSSGT-SPPTLLTVDSVTDTTVTMRWRPPDHIG-AAGLDGYVLEYCFEGTEDWIVANK 59
Query: 140 RNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTARDMVRAP 189
+TK + L + V+A+ AG + ++ +
Sbjct: 60 DLIDKTKFTITGLPTDAKIFVRVKAVNAAGASEPKYYSQPILVKESGPSS 109
Score = 33.9 bits (78), Expect = 0.020
Identities = 22/124 (17%), Positives = 35/124 (28%), Gaps = 34/124 (27%)
Query: 188 APLGVKALATSDQSVEV-WWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSN 246
P + + +D +V + W P G + GY + Y E ++W +N
Sbjct: 10 PPTLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEY---CFEGTEDWIV--------AN 58
Query: 247 IARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLG---RLSGK 303
I T + L + V V A G S
Sbjct: 59 KDLIDKTKFTITGLPTD-------------------AKIFVRVKAVNAAGASEPKYYSQP 99
Query: 304 VTVK 307
+ VK
Sbjct: 100 ILVK 103
Score = 31.2 bits (71), Expect = 0.17
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 314 PLSLRAHDVSTHSMTLSWSPP 334
P L V+ ++T+ W PP
Sbjct: 11 PTLLTVDSVTDTTVTMRWRPP 31
>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 94
Score = 48.9 bits (117), Expect = 7e-08
Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 5/77 (6%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYGVRE--HTLKENLVNSKNMSFLITNLERGVEYEFRIA 66
+I++ W P G++ YRV Y E + + + + L G EY +
Sbjct: 17 SIKIAWESPQ---GQVSRYRVTYSSPEDGIHELFPAPDGEEDTAELQGLRPGSEYTVSVV 73
Query: 67 GQNHIGYGQETVRYYTT 83
+ Q + +T
Sbjct: 74 ALHDDMESQPLIGTQST 90
Score = 42.8 bits (101), Expect = 1e-05
Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 7/84 (8%)
Query: 91 PPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANN--VIHRNTTQTKAV 148
P ++ D + I W+ P GQ+ Y V + D + + + A
Sbjct: 4 RPKGLAFTDVDVDSIKIAWESP-----QGQVSRYRVTYSSPEDGIHELFPAPDGEEDTAE 58
Query: 149 FSNLEEGIEYSAEVQAITKAGPGP 172
L G EY+ V A+
Sbjct: 59 LQGLRPGSEYTVSVVALHDDMESQ 82
Score = 37.8 bits (88), Expect = 7e-04
Identities = 18/121 (14%), Positives = 38/121 (31%), Gaps = 36/121 (29%)
Query: 188 APLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNI 247
P G+ S+++ W+ G++ Y++ Y+
Sbjct: 4 RPKGLAFTDVDVDSIKIAWESPQ---GQVSRYRVTYS----------------------- 37
Query: 248 ARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLSGKVTVK 307
+ + + E ++AEL L +EY V+V A ++ S +
Sbjct: 38 -------SPEDGIHELFPAPDGEEDTAELQGLRPGSEYTVSVVA--LHDDME-SQPLIGT 87
Query: 308 V 308
Sbjct: 88 Q 88
Score = 32.8 bits (75), Expect = 0.044
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 312 DVPLSLRAHDVSTHSMTLSWSPP 334
D P L DV S+ ++W P
Sbjct: 3 DRPKGLAFTDVDVDSIKIAWESP 25
>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de
novo; 2.50A {Synthetic}
Length = 98
Score = 47.8 bits (114), Expect = 2e-07
Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 5/82 (6%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYGV--REHTLKENLVNSKNMSFLITNLERGVEYEFRIA 66
++ L W+ P + ++Y + V S+ +T L+ G EY I
Sbjct: 17 SLRLSWTAPD---AAFDSFMIQYQESEKVGEAINLTVPGSERSYDLTGLKPGTEYTVSIY 73
Query: 67 GQNHIGYGQETVRYYTTPEGPP 88
G +TT
Sbjct: 74 GVKGGHRSNPLSAEFTTGGHHH 95
Score = 40.1 bits (94), Expect = 9e-05
Identities = 23/130 (17%), Positives = 42/130 (32%), Gaps = 36/130 (27%)
Query: 185 MVRAPLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTES 244
M+ AP + ++ S+ + W + I Y + E + E ++P +E
Sbjct: 1 MLPAPKNLVVSEVTEDSLRLSWTAPD---AAFDSFMIQYQES--EKVGEAINLTVPGSER 55
Query: 245 SNIARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLSGKV 304
S +LT L+ TEY V++ V G R S +
Sbjct: 56 S----------------------------YDLTGLKPGTEYTVSIYG--VKGGHR-SNPL 84
Query: 305 TVKVKPEDVP 314
+ +
Sbjct: 85 SAEFTTGGHH 94
Score = 39.4 bits (92), Expect = 2e-04
Identities = 11/86 (12%), Positives = 29/86 (33%), Gaps = 7/86 (8%)
Query: 91 PPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANNVIHRNT--TQTKAV 148
P N+ T D + ++W P + + +++ + I+ ++
Sbjct: 4 APKNLVVSEVTEDSLRLSWTAP-----DAAFDSFMIQYQESEKVGEAINLTVPGSERSYD 58
Query: 149 FSNLEEGIEYSAEVQAITKAGPGPWS 174
+ L+ G EY+ + +
Sbjct: 59 LTGLKPGTEYTVSIYGVKGGHRSNPL 84
Score = 30.9 bits (70), Expect = 0.19
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 312 DVPLSLRAHDVSTHSMTLSWSPP 334
P +L +V+ S+ LSW+ P
Sbjct: 3 PAPKNLVVSEVTEDSLRLSWTAP 25
>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein
binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP:
b.1.2.1
Length = 115
Score = 48.0 bits (114), Expect = 3e-07
Identities = 17/94 (18%), Positives = 31/94 (32%), Gaps = 16/94 (17%)
Query: 9 TIELVWSQPTQTYGEILGYRVKY--------------GVREHTLKENLVNSKNMSFLITN 54
++ L W P I+ ++V+Y + K N K+ + +T+
Sbjct: 18 SVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTD 77
Query: 55 LERGVEYEFRIAGQNHIGYGQ--ETVRYYTTPEG 86
L+ Y FRI + T + G
Sbjct: 78 LKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPG 111
Score = 42.6 bits (100), Expect = 2e-05
Identities = 17/114 (14%), Positives = 32/114 (28%), Gaps = 18/114 (15%)
Query: 188 APLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNI 247
P SD+SV + W I+ +++ Y M W +
Sbjct: 5 PPTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVG--KRKNWQTTN--------- 53
Query: 248 ARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLS 301
+ + + +A +T L+ Y + A N + S
Sbjct: 54 -------DNIPYGKPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKES 100
Score = 35.7 bits (82), Expect = 0.006
Identities = 15/104 (14%), Positives = 29/104 (27%), Gaps = 17/104 (16%)
Query: 86 GPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANN--------- 136
G PP + + + V + W P + IV++ V++ N
Sbjct: 1 GST-YPPTPPNVTRLSDESVMLRWMVP--RNDGLPIVIFKVQYRMVGKRKNWQTTNDNIP 57
Query: 137 -----VIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSP 175
A ++L+ Y + A+ S
Sbjct: 58 YGKPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESN 101
>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes
(CDON)binding...; fibronectin type III, FN3; NMR {Mus
musculus} SCOP: b.1.2.1
Length = 121
Score = 48.1 bits (115), Expect = 3e-07
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 7/89 (7%)
Query: 9 TIELVWSQPTQTYGEILGYRVKY----GVREHTLKENLVNSKNMSFLITNLERGVEYEFR 64
++ + W I +RV+Y V + L + + +S IT LE+G+ Y+FR
Sbjct: 33 SVYVTWIPRGNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSRLSVEITGLEKGISYKFR 92
Query: 65 IAGQNHIGYGQ---ETVRYYTTPEGPPTG 90
+ N +G + + Y + GP +G
Sbjct: 93 VRALNMLGESEPSAPSRPYVVSGSGPSSG 121
Score = 37.3 bits (87), Expect = 0.002
Identities = 27/133 (20%), Positives = 38/133 (28%), Gaps = 28/133 (21%)
Query: 169 GPGPWSPKLSLMTARDMVRAPLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAV 228
G S AP S+ SV V W P G I +++ Y
Sbjct: 1 GSSGSSGSQPDHGRLSPPEAPDRPTISTASETSVYVTWIPRGNGGFPIQSFRVEYKKL-- 58
Query: 229 EDLDEWSQKSIPLTESSNIARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVA 288
+ + +W + A + P S E+T LEK Y
Sbjct: 59 KKVGDW-------------------ILATSAIP-------PSRLSVEITGLEKGISYKFR 92
Query: 289 VAARTVNGLGRLS 301
V A + G S
Sbjct: 93 VRALNMLGESEPS 105
Score = 36.6 bits (85), Expect = 0.003
Identities = 19/99 (19%), Positives = 33/99 (33%), Gaps = 9/99 (9%)
Query: 82 TTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVL-YNVKFHKKIDANN---- 136
PP P + + V +TW P G + + V++ K +
Sbjct: 12 HGRLSPP-EAPDRPTISTASETSVYVTWIPR---GNGGFPIQSFRVEYKKLKKVGDWILA 67
Query: 137 VIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSP 175
++ + LE+GI Y V+A+ G S
Sbjct: 68 TSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSA 106
Score = 31.2 bits (71), Expect = 0.20
Identities = 8/41 (19%), Positives = 13/41 (31%), Gaps = 2/41 (4%)
Query: 296 GLGRLSGKVTVKVKPE--DVPLSLRAHDVSTHSMTLSWSPP 334
G SG + + P S S+ ++W P
Sbjct: 1 GSSGSSGSQPDHGRLSPPEAPDRPTISTASETSVYVTWIPR 41
>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold,
fibronectin type III, structural genomics; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 117
Score = 47.8 bits (114), Expect = 4e-07
Identities = 12/85 (14%), Positives = 25/85 (29%), Gaps = 4/85 (4%)
Query: 9 TIELVWSQPTQTYGEILGYRVKY--GVREHTLKENLVNSKNMSFLITNLERGVEYEFRIA 66
++ L W T Y ++ ++ + + K + + L Y F +
Sbjct: 31 SVTLSWQPGTPGTLPASAYIIEAFSQSVSNSWQTVANHVKTTLYTVRGLRPNTIYLFMVR 90
Query: 67 GQNHIGYGQ--ETVRYYTTPEGPPT 89
N G T + P+
Sbjct: 91 AINPQGLSDPSPMSDPVRTQDSGPS 115
Score = 45.4 bits (108), Expect = 2e-06
Identities = 21/104 (20%), Positives = 35/104 (33%), Gaps = 5/104 (4%)
Query: 83 TPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANN--VIHR 140
P GPP+ T + V ++W P T Y ++ + +N+ +
Sbjct: 11 DLSDLP-GPPSKPQVTDVTKNSVTLSWQPG--TPGTLPASAYIIEAFSQSVSNSWQTVAN 67
Query: 141 NTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTARD 184
+ T L Y V+AI G SP + +D
Sbjct: 68 HVKTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQD 111
Score = 33.9 bits (78), Expect = 0.024
Identities = 22/128 (17%), Positives = 35/128 (27%), Gaps = 33/128 (25%)
Query: 188 APLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNI 247
P + + SV + W+P G Y I E +S+
Sbjct: 18 PPSKPQVTDVTKNSVTLSWQPGTPGTLPASAYII-----------EAFSQSVS------- 59
Query: 248 ARIFYTMTAVEDLDEWSQ-KSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLSGKVTV 306
+ W + T + L T Y V A GL S ++
Sbjct: 60 -------------NSWQTVANHVKTTLYTVRGLRPNTIYLFMVRAINPQGLSDPS-PMSD 105
Query: 307 KVKPEDVP 314
V+ +D
Sbjct: 106 PVRTQDSG 113
Score = 32.7 bits (75), Expect = 0.056
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 301 SGKVTVKVKPEDVP---LSLRAHDVSTHSMTLSWSPP 334
SG D+P + DV+ +S+TLSW P
Sbjct: 3 SGSSGKNYDLSDLPGPPSKPQVTDVTKNSVTLSWQPG 39
>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol,
hormone-growth complex; HET: CME EST; 2.95A {Homo
sapiens}
Length = 121
Score = 47.6 bits (113), Expect = 5e-07
Identities = 21/126 (16%), Positives = 43/126 (34%), Gaps = 11/126 (8%)
Query: 60 EYEFRIAGQNHIGYGQETVRYYTTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNG 119
+ + E + + + PT + TP + I+WD P
Sbjct: 4 HHHHHSSDYKDDDDKGENLYFQGSVSDVPT----KLEVVAATPTSLLISWDAP-----AV 54
Query: 120 QIVLYNVKFHKKIDANNV--IHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKL 177
+ Y + + + + V +++ A S L+ G++Y+ V A+T K
Sbjct: 55 TVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGLRLMLAGSKP 114
Query: 178 SLMTAR 183
+ R
Sbjct: 115 ISINYR 120
Score = 44.5 bits (105), Expect = 5e-06
Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 5/70 (7%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYGV--REHTLKENLVNSKNMSFLITNLERGVEYEFRIA 66
++ + W P + YR+ YG ++E V + I+ L+ GV+Y +
Sbjct: 44 SLLISWDAPA---VTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVY 100
Query: 67 GQNHIGYGQE 76
+
Sbjct: 101 AVTGLRLMLA 110
Score = 40.6 bits (95), Expect = 1e-04
Identities = 18/120 (15%), Positives = 40/120 (33%), Gaps = 34/120 (28%)
Query: 188 APLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNI 247
P ++ +A + S+ + W + Y+I Y T + ++P ++S
Sbjct: 31 VPTKLEVVAATPTSLLISWDAPA---VTVRYYRITYGETG--GNSPVQEFTVPGSKS--- 82
Query: 248 ARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLG-RLSGKVTV 306
+A ++ L+ +Y + V A T L S +++
Sbjct: 83 -------------------------TATISGLKPGVDYTITVYAVTGLRLMLAGSKPISI 117
Score = 32.2 bits (73), Expect = 0.11
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 304 VTVKVKPEDVPLSLRAHDVSTHSMTLSWSPP 334
+ + DVP L + S+ +SW P
Sbjct: 22 LYFQGSVSDVPTKLEVVAATPTSLLISWDAP 52
>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens}
SCOP: b.1.2.1
Length = 112
Score = 46.9 bits (112), Expect = 5e-07
Identities = 29/111 (26%), Positives = 41/111 (36%), Gaps = 8/111 (7%)
Query: 81 YTTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDAN--NVI 138
+++P PP G P ++ T V + W P T +I Y V+ +
Sbjct: 7 HSSPIDPP-GKPVPLNI---TRHTVTLKWAKPEYTG-GFKITSYIVEKRDLPNGRWLKAN 61
Query: 139 HRNTTQTKAVFSNLEEGIEYSAEVQAITKAGP-GPWSPKLSLMTARDMVRA 188
N + + S L E Y V A AG P S +T RD V A
Sbjct: 62 FSNILENEFTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCRDDVEA 112
Score = 46.6 bits (111), Expect = 7e-07
Identities = 26/100 (26%), Positives = 36/100 (36%), Gaps = 18/100 (18%)
Query: 9 TIELVWSQPTQTYG-EILGYRVKY--GVREHTLKENLVNSKNMSFLITNLERGVEYEFRI 65
T+ L W++P T G +I Y V+ LK N N F ++ L YEFR+
Sbjct: 26 TVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEFTVSGLTEDAAYEFRV 85
Query: 66 AGQNHIGYGQETVRYYTTPEGPPTGPPANISHHFQTPDVV 105
+N G PP+ S D V
Sbjct: 86 IAKNAAG---------------AISPPSEPSDAITCRDDV 110
Score = 30.8 bits (70), Expect = 0.25
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 310 PEDVPLSLRAHDVSTHSMTLSWSPP 334
P D P +++ H++TL W+ P
Sbjct: 10 PIDPPGKPVPLNITRHTVTLKWAKP 34
Score = 30.4 bits (69), Expect = 0.41
Identities = 24/115 (20%), Positives = 31/115 (26%), Gaps = 33/115 (28%)
Query: 188 APLGVKALATSDQSVEV-WWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSN 246
P L + +V + W KP G KI Y + W + SN
Sbjct: 13 PPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEK---RDLPNGRWLK-----ANFSN 64
Query: 247 IARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLS 301
I +T V L E Y V A N G +S
Sbjct: 65 ILENEFT---VSGLTED-------------------AAYEFRVIA--KNAAGAIS 95
>2csp_A RIM-BP2, RIM binding protein 2; FN3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 130
Score = 46.7 bits (110), Expect = 1e-06
Identities = 24/119 (20%), Positives = 40/119 (33%), Gaps = 7/119 (5%)
Query: 76 ETVRYYTTPEGPPTGPPANIS-HHFQTPDVVCITWDPPLR----THRNGQIVLYNVKFHK 130
V + T P GPP PP +++ TP + ++W PP+ + Y V + K
Sbjct: 6 SGVEFSTLPAGPP-APPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGV-YAK 63
Query: 131 KIDANNVIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTARDMVRAP 189
VI T L V+ ++ G S ++ + P
Sbjct: 64 GQRVAEVIFPTADSTAVELVRLRSLEAKGVTVRTLSAQGESVDSAVAAVPPELLVPPTP 122
>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1,
midin-2, ring finger protein 60, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 127
Score = 46.4 bits (110), Expect = 1e-06
Identities = 22/107 (20%), Positives = 35/107 (32%), Gaps = 11/107 (10%)
Query: 76 ETVRYYTTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLY-------NVKF 128
E + Y T P PP+ + + D + + W + + Y N
Sbjct: 8 EGLDYLTAP-NPPSIREELCT---ASHDTITVHWISDDEFSISSYELQYTIFTGQANFIS 63
Query: 129 HKKIDANNVIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSP 175
+ +I N Q L+ G Y V+AI +AG P
Sbjct: 64 LYNSVDSWMIVPNIKQNHYTVHGLQSGTRYIFIVKAINQAGSRNSEP 110
Score = 44.9 bits (106), Expect = 4e-06
Identities = 18/97 (18%), Positives = 32/97 (32%), Gaps = 14/97 (14%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYGVREHTLKENLVNS-----------KNMSFLITNLER 57
TI + W + I Y ++Y + + + K + + L+
Sbjct: 32 TITVHWISDDE--FSISSYELQYTIFTGQANFISLYNSVDSWMIVPNIKQNHYTVHGLQS 89
Query: 58 GVEYEFRIAGQNHIGYGQ-ETVRYYTTPEGPPTGPPA 93
G Y F + N G E R T + +GP +
Sbjct: 90 GTRYIFIVKAINQAGSRNSEPTRLKTNSQPFKSGPSS 126
Score = 34.1 bits (78), Expect = 0.021
Identities = 19/129 (14%), Positives = 31/129 (24%), Gaps = 25/129 (19%)
Query: 188 APLG-VKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSN 246
P + S ++ V W I Y++ YT+ + S+
Sbjct: 18 PPSIREELCTASHDTITVHWIS--DDEFSISSYELQYTIFTGQANFISLYNSV------- 68
Query: 247 IARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLSGKVTV 306
D W + L+ T Y V A G S +
Sbjct: 69 --------------DSWMIVPNIKQNHYTVHGLQSGTRYIFIVKAINQAGSRN-SEPTRL 113
Query: 307 KVKPEDVPL 315
K +
Sbjct: 114 KTNSQPFKS 122
Score = 29.1 bits (65), Expect = 1.2
Identities = 6/38 (15%), Positives = 11/38 (28%), Gaps = 4/38 (10%)
Query: 301 SGKVTVKVKPEDVP----LSLRAHDVSTHSMTLSWSPP 334
SG + P + S ++T+ W
Sbjct: 3 SGSSGEGLDYLTAPNPPSIREELCTASHDTITVHWISD 40
>3qt2_A Interleukin-5 receptor subunit alpha; cytokine type I receptor
fold, fibronectin type III modules, helical bundle,
cytokine, ligand-receptor complex; HET: BGC; 2.55A {Homo
sapiens}
Length = 317
Score = 48.7 bits (115), Expect = 1e-06
Identities = 40/261 (15%), Positives = 77/261 (29%), Gaps = 26/261 (9%)
Query: 88 PTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANNVIHRNTTQTKA 147
PP N + V + W P + + Y VK + + + T++KA
Sbjct: 11 SLLPPVNFTIKVTGLAQVLLQWKPNPDQEQRNVNLEYQVKINAPKEDDYETR--ITESKA 68
Query: 148 VFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTARDMVRAPLGVKALATSDQSVEVWWK 207
V L G S V+ I + + + + AP G TS ++
Sbjct: 69 VT-ILHMGFSAS--VRTILQNDHSLLASSWASAE----LHAPPGS--PGTSIVNLTCTTN 119
Query: 208 PVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNIARIFYTMTAVEDLDE-WSQK 266
++ YQ+ T W + ++ Y E +
Sbjct: 120 TTEDNYSRLRSYQVSLHCT-------WMVGTDAPEDTQYFLYYRYGSWTEECQEYSMDTL 172
Query: 267 SVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLSG-----KVTVKVKPEDVPLSLRAHD 321
+ T + +AV + + + + + PL++ A
Sbjct: 173 GRNIACWFPRTFILSKGRDWLAVLVNGSSKHSAIRPFDQLFALHAIDQI-NPPLNVTAEI 231
Query: 322 VSTHSMTLSWSPPIKLNPVKY 342
T M++ W P+ P+
Sbjct: 232 EGTR-MSIQWEKPVSAFPIHC 251
Score = 48.7 bits (115), Expect = 2e-06
Identities = 21/117 (17%), Positives = 39/117 (33%), Gaps = 7/117 (5%)
Query: 61 YEFRIAGQNHIGYGQETVRYYTTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQ 120
+ G + + + + PP N++ + I W+ P +
Sbjct: 193 LAVLVNGSSKHSAIRPFDQLFALHAIDQINPPLNVTAEI-EGTRMSIQWEKP-VSAFPIH 250
Query: 121 IVLYNVKFHKKIDANNVIHRNTTQTKAVFSNLEEGIEYSAEVQAITK---AGPGPWS 174
Y VK H + I + T A S +++ +Y +V+A G WS
Sbjct: 251 CFDYEVKIHNTRNGYLQIEKL--MTNAFISIIDDLSKYDVQVRAAVSSMCREAGLWS 305
Score = 32.2 bits (72), Expect = 0.34
Identities = 7/57 (12%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 10 IELVWSQPTQTY-GEILGYRVKYGVREHTLKENLVNSKNMSFLITNLERGVEYEFRI 65
+ + W +P + Y VK + + + + I+ ++ +Y+ ++
Sbjct: 236 MSIQWEKPVSAFPIHCFDYEVKIHNTRNGYLQ--IEKLMTNAFISIIDDLSKYDVQV 290
>1axi_B HGHBP, growth hormone receptor; complex (hormone-receptor), complex
(hormone-receptor) compl; 2.10A {Homo sapiens} SCOP:
b.1.2.1 b.1.2.1 PDB: 1a22_B 1kf9_B 1hwg_B 1hwh_B 3hhr_B
2aew_A
Length = 236
Score = 48.3 bits (114), Expect = 1e-06
Identities = 18/131 (13%), Positives = 41/131 (31%), Gaps = 7/131 (5%)
Query: 49 SFLITNLERGVEYEFRIAGQNHIGYGQE---TVRYYTTPEGPPTGPPANISHHFQTPDVV 105
F + + Y ++ + P N+S D+
Sbjct: 95 YFNSSFTSIAIPYCIKLTSNGGTVDEKCFSVDEIVQPDPPIALNWTLLNVSLTGIHADIQ 154
Query: 106 CITWDPPLRTH-RNGQIVL-YNVKFHKKIDANNVIHRNTTQTKAVFSNLEEGIEYSAEVQ 163
+ W+ P + G +VL Y +++ + + + T +L+ EY V+
Sbjct: 155 -VRWEAPRNADIQKGWMVLEYELQYKEVNETKWKMMDPILTTSVPVYSLKVDKEYEVRVR 213
Query: 164 AITKAGPGPWS 174
+ + G +
Sbjct: 214 SKQRNS-GNYG 223
Score = 37.5 bits (86), Expect = 0.005
Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 4/66 (6%)
Query: 4 EEPEVTIELVWSQPT----QTYGEILGYRVKYGVREHTLKENLVNSKNMSFLITNLERGV 59
I++ W P Q +L Y ++Y T + + S + +L+
Sbjct: 147 TGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNETKWKMMDPILTTSVPVYSLKVDK 206
Query: 60 EYEFRI 65
EYE R+
Sbjct: 207 EYEVRV 212
Score = 35.2 bits (80), Expect = 0.023
Identities = 28/234 (11%), Positives = 58/234 (24%), Gaps = 46/234 (19%)
Query: 77 TVRYYTTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTH--RNGQIVLYNVKFHKKIDA 134
+ +G P + W + G I L+ + + +
Sbjct: 18 LQSVNPGLKTNSSGEPKFTKCRSPERETFSCHWTDEVHHGTKNEGPIQLFYTRRNTQEWT 77
Query: 135 NNVIHRNTTQTKAVFS------NLEEGIEYSAEVQAITKAG-PGPWSPKLSLMTARDM-V 186
+ S I Y ++ + +S + + +
Sbjct: 78 QEWKECPDYVSAGENSCYFNSSFTSIAIPYCIKLTSNGGTVDEKCFSVDEIVQPDPPIAL 137
Query: 187 RAPLGVKALATSDQSVEVWWKPVPAGRGK----ILGYQIFYTMTAVEDLDEWSQKSIPLT 242
L +L ++V W+ + +L Y++ Y
Sbjct: 138 NWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKE----------------- 180
Query: 243 ESSNIARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNG 296
+ +W LT S + SL+ EY V V ++ N
Sbjct: 181 ---------------VNETKWKMMDPILTTSVPVYSLKVDKEYEVRVRSKQRNS 219
>4doh_B Interleukin-20 receptor subunit beta; IL10 family cytokine receptor
complex, alpha helical cytokin beta sandwhich receptor
fold, signaling complex; HET: NAG; 2.80A {Homo sapiens}
Length = 206
Score = 47.8 bits (113), Expect = 2e-06
Identities = 28/232 (12%), Positives = 64/232 (27%), Gaps = 50/232 (21%)
Query: 91 PPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANNVIHR--------NT 142
P +S + W P G+ V Y+V++ + ++ H T
Sbjct: 9 APQQLSVLSTNMKHLL-MWSPV---IAPGETVYYSVEYQGEYESLYTSHIWIPSSWCSLT 64
Query: 143 TQTKAVFS-NLEEGIEYSAEVQAITKAGPGPWSPKLSLMTARDMVRAPLGVKALATSDQS 201
+ + ++ + Y+ V+A + WS + + G++
Sbjct: 65 EGPECDVTDDITATVPYNLRVRATLGSQTSAWSILKHPFNRQSTILTRPGMEITKDGF-H 123
Query: 202 VEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNIARIFYTMTAVEDLD 261
+ + + + G + + Y W ++ +
Sbjct: 124 LVIELEDL----GPQFEFLVAY----------WRREP--------------------GAE 149
Query: 262 EWSQKSVPLTESAELTSLEKFTEYAVAVAART--VNGLGRLSGKVTVKVKPE 311
E + L ++E Y V + S V+V+ E
Sbjct: 150 EHVKMVRSGGIPVHLETMEPGAAYCVKAQTFVKAIGRYSAFSQTECVEVQGE 201
Score = 31.6 bits (71), Expect = 0.33
Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 6/61 (9%)
Query: 7 EVTIELVWSQPTQTYGEILGYRVKYGVREHTLKE--NLVNSKNMSFLITNLERGVEYEFR 64
+ + G + V Y RE +E +V S + + +E G Y +
Sbjct: 121 GFHLVIELEDL----GPQFEFLVAYWRREPGAEEHVKMVRSGGIPVHLETMEPGAAYCVK 176
Query: 65 I 65
Sbjct: 177 A 177
>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 104
Score = 45.2 bits (107), Expect = 2e-06
Identities = 16/83 (19%), Positives = 25/83 (30%), Gaps = 6/83 (7%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYGV--REHTLKENLVNSKNMSFLITNLERGVEYEFRIA 66
T+ L W Y V+ + +E V L+ LE G +YE +
Sbjct: 24 TVHLTWQPS----AGATHYLVRCSPASPKGEEEEREVQVGRPEVLLDGLEPGRDYEVSVQ 79
Query: 67 GQNHIGYGQETVRYYTTPEGPPT 89
+ TP P+
Sbjct: 80 SLRGPEGSEARGIRARTPTSGPS 102
Score = 45.2 bits (107), Expect = 2e-06
Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 4/93 (4%)
Query: 82 TTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANNVIHRN 141
++ P PP ++ TP V +TW P +V + K + +
Sbjct: 2 SSGSSGPLPPPRALTLAAVTPRTVHLTWQPSAGA--THYLVRCSPASPKGEEEEREV--Q 57
Query: 142 TTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWS 174
+ + + LE G +Y VQ++
Sbjct: 58 VGRPEVLLDGLEPGRDYEVSVQSLRGPEGSEAR 90
Score = 37.9 bits (88), Expect = 8e-04
Identities = 18/129 (13%), Positives = 38/129 (29%), Gaps = 40/129 (31%)
Query: 188 APLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNI 247
P + A + ++V + W+P Y + + + +
Sbjct: 11 PPRALTLAAVTPRTVHLTWQPSAG----ATHYLVRCSPASPK------------------ 48
Query: 248 ARIFYTMTAVEDLDEWSQKSVPLTE-SAELTSLEKFTEYAVAVAARTVNGLGRLSGKVTV 306
E ++ V + L LE +Y V+V + + G S +
Sbjct: 49 -------------GEEEEREVQVGRPEVLLDGLEPGRDYEVSVQS--LRGPEG-SEARGI 92
Query: 307 KVK-PEDVP 314
+ + P P
Sbjct: 93 RARTPTSGP 101
Score = 35.2 bits (81), Expect = 0.006
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 305 TVKVKPEDVPLSLRAHDVSTHSMTLSWSPP 334
+ P P +L V+ ++ L+W P
Sbjct: 3 SGSSGPLPPPRALTLAAVTPRTVHLTWQPS 32
>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain,
structural genomics., NPPSFA; NMR {Homo sapiens}
Length = 120
Score = 45.4 bits (108), Expect = 2e-06
Identities = 22/104 (21%), Positives = 33/104 (31%), Gaps = 3/104 (2%)
Query: 73 YGQETVRYYTTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKI 132
G P GPP + + V +TW PP N I Y ++ K
Sbjct: 3 SGSSGASIDIQIIDRP-GPPQIVKIEDVWGENVALTWTPPKDDG-NAAITGYTIQKADKK 60
Query: 133 DAN-NVIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSP 175
+ + +T A + L G EY V + G +
Sbjct: 61 SMEWFTVIEHYHRTSATITELVIGNEYYFRVFSENMCGLSEDAT 104
Score = 45.0 bits (107), Expect = 4e-06
Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 2/69 (2%)
Query: 9 TIELVWSQPTQTYG-EILGYRV-KYGVREHTLKENLVNSKNMSFLITNLERGVEYEFRIA 66
+ L W+ P I GY + K + + + S IT L G EY FR+
Sbjct: 33 NVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTVIEHYHRTSATITELVIGNEYYFRVF 92
Query: 67 GQNHIGYGQ 75
+N G +
Sbjct: 93 SENMCGLSE 101
Score = 35.4 bits (82), Expect = 0.007
Identities = 9/34 (26%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 301 SGKVTVKVKPEDVPLSLRAHDVSTHSMTLSWSPP 334
S + + +P P ++ DV ++ L+W+PP
Sbjct: 9 SIDIQIIDRP-GPPQIVKIEDVWGENVALTWTPP 41
>1y6k_R Interleukin-10 receptor alpha chain; helix bundle, receptor
complex, immune system; 2.52A {Homo sapiens} SCOP:
b.1.2.1 b.1.2.1 PDB: 1j7v_R* 1lqs_R 1y6m_R 1y6n_R
Length = 214
Score = 47.0 bits (111), Expect = 3e-06
Identities = 28/188 (14%), Positives = 53/188 (28%), Gaps = 16/188 (8%)
Query: 12 LVWSQPTQTYGEILGYRV---KYGVREHTLKENLVN--SKNMSFLITNLERGVEYEFRIA 66
L W P E Y V +YG+ S +++ + +L Y R+
Sbjct: 22 LHW-TPIPQQSESTCYEVALLRYGIESWNSISQCSQTLSYDLTAVTLDLYHSNGYRARVR 80
Query: 67 GQNHIGY--GQETVRYYTTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRN------ 118
+ + T ++ E T N+ H P + ++
Sbjct: 81 AVDGSRHSQWTVTNTRFSVDEVTLTVGSVNLEIHNGFILGKIQLPRPKMAPAQDTYESIF 140
Query: 119 GQIVLYNVKFHKKIDANNVIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGP--GPWSPK 176
Y + K H+ + E E+ +V+ + G WS +
Sbjct: 141 SHFREYEIAIRKVPGQFTFTHKKVKHEQFSLLTSGEVGEFCVQVKPSVASRSNKGMWSKE 200
Query: 177 LSLMTARD 184
+ R
Sbjct: 201 ECISLTRQ 208
Score = 34.7 bits (79), Expect = 0.031
Identities = 21/190 (11%), Positives = 44/190 (23%), Gaps = 30/190 (15%)
Query: 108 TWDPPLRTHRNGQIVLYNVKF-----HKKIDANNVIHRNTTQTKAVFSNLEEGIEYSAEV 162
W P + + Y V + + AV +L Y A V
Sbjct: 23 HWTPI---PQQSESTCYEVALLRYGIESWNSISQCSQTLSYDLTAVTLDLYHSNGYRARV 79
Query: 163 QAITKAGPGPWSPKLSLMTARDMVRAPLGVKALATSDQSVEVWWKPVPAGRGKILGYQIF 222
+A+ + W+ + + ++ V + + P P Y+
Sbjct: 80 RAVDGSRHSQWTVTNTRFSVDEVTLTVGSVNLEIHNGFILGKIQLPRPKMAPAQDTYESI 139
Query: 223 YTMTAVEDLDEWSQKSIPLTESSNIARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKF 282
++ ++ E L + +
Sbjct: 140 FSHFREYEIAIRKVPG----------------------QFTFTHKKVKHEQFSLLTSGEV 177
Query: 283 TEYAVAVAAR 292
E+ V V
Sbjct: 178 GEFCVQVKPS 187
>2b5i_B Interleukin-2 receptor beta chain; four-helix bundle, fibronectin
domain, cytokine-cytokine REC complex; HET: NAG; 2.30A
{Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3qaz_B*
2erj_B*
Length = 214
Score = 47.1 bits (111), Expect = 3e-06
Identities = 14/98 (14%), Positives = 29/98 (29%), Gaps = 7/98 (7%)
Query: 91 PPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDA---NNVIHRNTTQTKA 147
P ++ I+W+ +H + + + + ++ Q
Sbjct: 108 APISLQVVHVETHRCNISWEISQASHYFERHLEFEARTLSPGHTWEEAPLLTLKQKQEWI 167
Query: 148 VFSNLEEGIEYSAEVQAITKAGPG----PWSPKLSLMT 181
L +Y +V+ G PWS L+ T
Sbjct: 168 CLETLTPDTQYEFQVRVKPLQGEFTTWSPWSQPLAFRT 205
Score = 43.6 bits (102), Expect = 3e-05
Identities = 16/94 (17%), Positives = 30/94 (31%), Gaps = 9/94 (9%)
Query: 3 KEEPEVTIELVWSQPTQTYGEILGYRVKYGVREHTLKEN---LVNSKNMSFLITNLERGV 59
E I SQ + + L + + HT +E + K + L
Sbjct: 117 VETHRCNISWEISQASHYFERHLEFEARTLSPGHTWEEAPLLTLKQKQEWICLETLTPDT 176
Query: 60 EYEFRIAGQNHIGYGQ------ETVRYYTTPEGP 87
+YEF++ + G + + + T P
Sbjct: 177 QYEFQVRVKPLQGEFTTWSPWSQPLAFRTKPAAL 210
Score = 32.5 bits (73), Expect = 0.17
Identities = 24/207 (11%), Positives = 52/207 (25%), Gaps = 47/207 (22%)
Query: 103 DVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANNVIHRNTTQTKAVFS-NLEEGIEYSA- 160
+ C W Q V ++A ++ NL G S
Sbjct: 17 QISC-VWSQD----GALQDTSCQVHAWPDRRRWQQTCELLPVSQASWACNLILGAPDSQK 71
Query: 161 -------EVQAITKAGPGPWSPKLSLMTARDMVR--APLGVKALATSDQSVEVWWKPVPA 211
++ + + G + + +R AP+ ++ + + W+ A
Sbjct: 72 LTTVDIVTLRVLCREGVRWRVMAIQDFKPFENLRLMAPISLQVVHVETHRCNISWEISQA 131
Query: 212 G--RGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNIARIFYTMTAVEDLDEWSQKSVP 269
+ L ++ W + + +
Sbjct: 132 SHYFERHLEFEARTLSPG----HTWEEAPLLTLKQK------------------------ 163
Query: 270 LTESAELTSLEKFTEYAVAVAARTVNG 296
E L +L T+Y V + + G
Sbjct: 164 -QEWICLETLTPDTQYEFQVRVKPLQG 189
>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein,
adnect antitumor, drug, engineered binding protein; HET:
NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D*
Length = 114
Score = 44.9 bits (106), Expect = 3e-06
Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 9/89 (10%)
Query: 90 GPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANNVIHRNT---TQTK 146
P ++ TP + I+WD G Y + + + N+ + T
Sbjct: 5 DVPRDLEVVAATPTSLLISWDSG-----RGSYQYYRITY-GETGGNSPVQEFTVPGPVHT 58
Query: 147 AVFSNLEEGIEYSAEVQAITKAGPGPWSP 175
A S L+ G++Y+ V A+T P P
Sbjct: 59 ATISGLKPGVDYTITVYAVTDHKPHADGP 87
Score = 43.7 bits (103), Expect = 8e-06
Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 12/99 (12%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYGV--REHTLKENLVNSKNMSFLITNLERGVEYEFRI- 65
++ + W G YR+ YG ++E V + I+ L+ GV+Y +
Sbjct: 19 SLLISWDSGR---GSYQYYRITYGETGGNSPVQEFTVPGPVHTATISGLKPGVDYTITVY 75
Query: 66 AGQNHIGYGQETVRYYTTPEGP-----PTGPPAN-ISHH 98
A +H + Y+ +P P + HH
Sbjct: 76 AVTDHKPHADGPHTYHESPISINYRTEIDKPSQHHHHHH 114
Score = 41.4 bits (97), Expect = 6e-05
Identities = 20/141 (14%), Positives = 41/141 (29%), Gaps = 40/141 (28%)
Query: 188 APLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNI 247
P ++ +A + S+ + W G Y+I Y T + ++P +
Sbjct: 6 VPRDLEVVAATPTSLLISWDSGR---GSYQYYRITYGETGGNS--PVQEFTVPGPVHT-- 58
Query: 248 ARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLSGK---- 303
A ++ L+ +Y + V A T +
Sbjct: 59 --------------------------ATISGLKPGVDYTITVYAVTDHKPHADGPHTYHE 92
Query: 304 --VTVKVKPE-DVPLSLRAHD 321
+++ + E D P H
Sbjct: 93 SPISINYRTEIDKPSQHHHHH 113
Score = 33.0 bits (75), Expect = 0.042
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 312 DVPLSLRAHDVSTHSMTLSWSPP 334
DVP L + S+ +SW
Sbjct: 5 DVPRDLEVVAATPTSLLISWDSG 27
>1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 137
Score = 45.4 bits (107), Expect = 4e-06
Identities = 18/108 (16%), Positives = 38/108 (35%), Gaps = 19/108 (17%)
Query: 4 EEPEVT------IELVWSQPTQTYG---------EILGYRVKYGVREHTLK-ENLVNSKN 47
+P + + L WS P+ E+ GY V K +++ +
Sbjct: 22 VKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDGKYKSVYVGEE 81
Query: 48 MSFLITNLERGVEYEFRIAGQNHIGYGQ--ETVRYYTTPEGPPTGPPA 93
+ + +L+ ++Y ++ + + G E +TT P P
Sbjct: 82 TNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAEI-FTTLSCEPDIPNP 128
Score = 39.6 bits (92), Expect = 4e-04
Identities = 20/114 (17%), Positives = 33/114 (28%), Gaps = 13/114 (11%)
Query: 76 ETVRYYTTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQ-------IVLYNVKF 128
ET + ++I V +TW PP + Y V
Sbjct: 10 ETKAFEALLSNIVKPVASDI-----QARTVVLTWSPPSSLINGETDESSVPELYGYEVLI 64
Query: 129 HKKIDANNVIH-RNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMT 181
+T ++L+ ++Y A+VQA + G S T
Sbjct: 65 SSTGKDGKYKSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAEIFTT 118
Score = 33.4 bits (76), Expect = 0.053
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 296 GLGRLSGKVTVKVKPE--DVPLSLRAHDVSTHSMTLSWSPPIKLN 338
G SG K + A D+ ++ L+WSPP L
Sbjct: 1 GSSGSSGDEETKAFEALLSNIVKPVASDIQARTVVLTWSPPSSLI 45
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.1 bits (114), Expect = 4e-06
Identities = 56/318 (17%), Positives = 94/318 (29%), Gaps = 123/318 (38%)
Query: 49 SFLITNLERGVEYEFRIAGQNHIGY-GQETVRYYTTP-----------EGPPTGPPANIS 96
SF ++ + + F IG E + P EG P+ P +IS
Sbjct: 291 SFF-VSVRKAITVLF------FIGVRCYEAYPNTSLPPSILEDSLENNEGVPS-PMLSIS 342
Query: 97 H--HFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANNVIHRNTTQTKAVFSNLEE 154
+ Q D V T + L + +I L N N V+
Sbjct: 343 NLTQEQVQDYVNKT-NSHLPAGKQVEISLVNG------AKNLVV---------------- 379
Query: 155 GIEYSAEVQAITKAGPGPWSPKLSLMTARDMVRAPLGVKALATSDQSVEVWWKPVPAGRG 214
+GP P+ SL +R KA + DQS + +P
Sbjct: 380 -------------SGP----PQ-SLYGLNLTLR---KAKAPSGLDQS-----R-IPFSER 412
Query: 215 KILGYQIFYTMTA--------------VEDLD----EWSQKS--IPL--TE--------S 244
K+ F + + +DL ++ K IP+ T S
Sbjct: 413 KLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLS 472
Query: 245 SNIARIFYTMTAVEDLDEWSQKSVPLTES-------AELTSLEKFTEYAVAVAARTVNGL 297
+I+ + W + + + + L T R +G
Sbjct: 473 GSISERIVDCIIRLPVK-W-ETTTQFKATHILDFGPGGASGLGVLT-------HRNKDGT 523
Query: 298 G-R--LSGKVTVKVKPED 312
G R ++G T+ + P+D
Sbjct: 524 GVRVIVAG--TLDINPDD 539
Score = 45.0 bits (106), Expect = 4e-05
Identities = 49/311 (15%), Positives = 95/311 (30%), Gaps = 101/311 (32%)
Query: 13 VWSQPTQTYGEILGYRVKYGVREHTLKENLVNSKNMSFLITNLERGVEYEFRIAGQNHIG 72
VW++ + + G+ + V N N++ E+G RI +N+
Sbjct: 1645 VWNRADNHFKDTYGFSILDIVIN--------NPVNLTIHFGG-EKGK----RIR-ENYSA 1690
Query: 73 YGQETVRYYTTPEGPPTGPPANISHHFQTPDVVCITWDPP---L-RTHRNGQ--IVLYNV 126
+ T +G + + T+ L T + Q + L
Sbjct: 1691 M-----IFETIVDGKLKTEKIFKEINEHSTS---YTFRSEKGLLSAT-QFTQPALTLMEK 1741
Query: 127 KFHKKIDANNVIHRNTTQTKAVF---SNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTAR 183
+ + + +I A F S L G EY+A ++ A +S+ +
Sbjct: 1742 AAFEDLKSKGLI-----PADATFAGHS-L--G-EYAALA-SL--AD------VMSIESLV 1783
Query: 184 DMVRAPLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAV-----------EDLD 232
++V G + + E+ GR Y M A+ E L
Sbjct: 1784 EVVFYR-G-MTMQVAVPRDEL-------GRSN-------YGMIAINPGRVAASFSQEALQ 1827
Query: 233 EW----SQKSIPLTESSNIARIFY-----------TMTAVED----LDEWSQKSVPLTES 273
+++ L E N Y + A++ L+ + + + E
Sbjct: 1828 YVVERVGKRTGWLVEIVN-----YNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIEL 1882
Query: 274 AELTSLEKFTE 284
+ SLE+
Sbjct: 1883 QKSLSLEEVEG 1893
>2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 112
Score = 44.6 bits (105), Expect = 5e-06
Identities = 18/92 (19%), Positives = 31/92 (33%), Gaps = 13/92 (14%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYGV----------REHTLKENLVNSKNMSFLITNLERG 58
++ L W P G + +++GV R +E +V S ++ +L G
Sbjct: 24 SLRLNWEAPP---GAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGTRHSAVLRDLRSG 80
Query: 59 VEYEFRIAGQNHIGYGQETVRYYTTPEGPPTG 90
Y + G T GP +G
Sbjct: 81 TLYSLTLYGLRGPHKADSIQGTARTLSGPSSG 112
Score = 36.9 bits (85), Expect = 0.002
Identities = 13/96 (13%), Positives = 27/96 (28%), Gaps = 7/96 (7%)
Query: 82 TTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVK-----FHKKIDANN 136
+ P + +S T + + W+ P + + H +
Sbjct: 4 GSSGSRP--RLSQLSVTDVTTSSLRLNWEAPPGAFDSFLLRFGVPSPSTLEPHPRPLLQR 61
Query: 137 VIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGP 172
+ T+ AV +L G YS + +
Sbjct: 62 ELMVPGTRHSAVLRDLRSGTLYSLTLYGLRGPHKAD 97
Score = 30.7 bits (69), Expect = 0.26
Identities = 16/126 (12%), Positives = 32/126 (25%), Gaps = 28/126 (22%)
Query: 188 APLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNI 247
+ + S+ + W+ P G + + + + + L+
Sbjct: 11 RLSQLSVTDVTTSSLRLNWEAPP---GAFDSFLLRFGVPSPSTLEP-------------- 53
Query: 248 ARIFYTMTAVEDLDEWSQKSVPLTE-SAELTSLEKFTEYAVAVAARTVNGLGR-LSGKVT 305
+ VP T SA L L T Y++ + + G
Sbjct: 54 ---------HPRPLLQRELMVPGTRHSAVLRDLRSGTLYSLTLYGLRGPHKADSIQGTAR 104
Query: 306 VKVKPE 311
P
Sbjct: 105 TLSGPS 110
Score = 30.3 bits (68), Expect = 0.43
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 310 PEDVPLSLRAHDVSTHSMTLSWSPP 334
L DV+T S+ L+W P
Sbjct: 8 SRPRLSQLSVTDVTTSSLRLNWEAP 32
>2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein;
NMR {Homo sapiens} PDB: 2h45_A
Length = 95
Score = 43.7 bits (103), Expect = 6e-06
Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 5/77 (6%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYGVRE--HTLKENLVNSKNMSFLITNLERGVEYEFRIA 66
+ + W + + G+RV+Y + E + + S S I +L G +Y +
Sbjct: 21 SFVVSWVSAS---DTVSGFRVEYELSEEGDEPQYLDLPSTATSVNIPDLLPGRKYIVNVY 77
Query: 67 GQNHIGYGQETVRYYTT 83
+ G + T
Sbjct: 78 QISEDGEQSLILSTSQT 94
Score = 37.1 bits (86), Expect = 0.001
Identities = 17/100 (17%), Positives = 33/100 (33%), Gaps = 8/100 (8%)
Query: 84 PEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFH--KKIDANNVIHRN 141
P G + S T ++W + + + V++ ++ D +
Sbjct: 2 PLGSH-LVATSESVTEITASSFVVSWVSA-----SDTVSGFRVEYELSEEGDEPQYLDLP 55
Query: 142 TTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMT 181
+T T +L G +Y V I++ G S T
Sbjct: 56 STATSVNIPDLLPGRKYIVNVYQISEDGEQSLILSTSQTT 95
Score = 32.1 bits (73), Expect = 0.064
Identities = 17/114 (14%), Positives = 31/114 (27%), Gaps = 33/114 (28%)
Query: 188 APLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNI 247
+ S V W + G+++ Y ++ E+ DE +P T +S
Sbjct: 8 VATSESVTEITASSFVVSWVS---ASDTVSGFRVEYELS--EEGDEPQYLDLPSTATS-- 60
Query: 248 ARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLS 301
+ L +Y V V + +G L
Sbjct: 61 --------------------------VNIPDLLPGRKYIVNVYQISEDGEQSLI 88
Score = 32.1 bits (73), Expect = 0.078
Identities = 6/28 (21%), Positives = 10/28 (35%), Gaps = 3/28 (10%)
Query: 310 PEDVPL---SLRAHDVSTHSMTLSWSPP 334
P L S +++ S +SW
Sbjct: 2 PLGSHLVATSESVTEITASSFVVSWVSA 29
>3up1_A Interleukin-7 receptor subunit alpha; cytokine receptor,
fibronectin type 3 fold, membrane and SOL glycosylation,
immune system; HET: NAG FUC NGA; 2.15A {Homo sapiens}
PDB: 3di3_B* 3di2_B*
Length = 223
Score = 46.3 bits (109), Expect = 6e-06
Identities = 17/89 (19%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 91 PPANISHHFQ-TPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANNVIHRNTTQTKAVF 149
P ++S ++ + +T++ + ++++++V + ++ D N H N + TK
Sbjct: 115 APFDLSVVYREGANDFVVTFNTSHLQKKYVKVLMHDVAYRQEKDENKWTHVNLSSTKLTL 174
Query: 150 --SNLEEGIEYSAEVQAITKAG-PGPWSP 175
L+ Y +V++I G WS
Sbjct: 175 LQRKLQPAAMYEIKVRSIPDHYFKGFWSE 203
Score = 42.5 bits (99), Expect = 1e-04
Identities = 17/95 (17%), Positives = 33/95 (34%), Gaps = 7/95 (7%)
Query: 3 KEEPEVTIELVWSQPTQTYGEILGYRVKYGVREHTLKENLVN--SKNMSFLITNLERGVE 60
+ + + S + Y ++L + V Y + K VN S ++ L L+
Sbjct: 125 EGANDFVVTFNTSHLQKKYVKVLMHDVAYRQEKDENKWTHVNLSSTKLTLLQRKLQPAAM 184
Query: 61 YEFRIAGQNHIGYGQE-----TVRYYTTPEGPPTG 90
YE ++ + Y+ TPE +
Sbjct: 185 YEIKVRSIPDHYFKGFWSEWSPSYYFRTPEINNSS 219
>2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin
type-III, beta-N-acetylglucosaminidase, cohesin,
hydrolase; 1.80A {Clostridium perfringens}
Length = 238
Score = 44.9 bits (105), Expect = 2e-05
Identities = 27/144 (18%), Positives = 40/144 (27%), Gaps = 12/144 (8%)
Query: 40 ENLVNSKNMSFLITNLERGVEYEFRIAGQNHIGYGQETVRYYTTPEGPPTGPPANISHHF 99
E N+S +++ G IAG E P +
Sbjct: 107 EAKTEGSNLSVTNSSVGDGEGLVHEIAGTEKTVNIIEGTSPEIVV-----NPVRDFKASE 161
Query: 100 QTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANNVIHRNTTQTKAVFSNLEEGIEYS 159
V +TW P + Y + D V +T F L Y+
Sbjct: 162 INKKNVTVTWTEPET---TEGLEGYILY----KDGKKVAEIGKDETSYTFKKLNRHTIYN 214
Query: 160 AEVQAITKAGPGPWSPKLSLMTAR 183
++ A G L+L TAR
Sbjct: 215 FKIAAKYSNGEVSSKESLTLRTAR 238
Score = 34.1 bits (77), Expect = 0.054
Identities = 17/150 (11%), Positives = 50/150 (33%), Gaps = 27/150 (18%)
Query: 196 ATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNIARIFYTMT 255
A SD V V K + G+ ++L + T + + ++ + + + + T +
Sbjct: 63 AISDDGVFVNAKKIEDGKVRVLVSSL--TGEPLPAKEVLAKVVLRAEAKTEGSNLSVTNS 120
Query: 256 AVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLSGKVTVKVKPEDVPL 315
+V D + + ++ + T +
Sbjct: 121 SVGDGEGLVHEIAGTEKTVNIIE-------------------------GTSPEIVVNPVR 155
Query: 316 SLRAHDVSTHSMTLSWSPPIKLNPVKYKEV 345
+A +++ ++T++W+ P ++ +
Sbjct: 156 DFKASEINKKNVTVTWTEPETTEGLEGYIL 185
Score = 31.4 bits (70), Expect = 0.42
Identities = 33/266 (12%), Positives = 65/266 (24%), Gaps = 57/266 (21%)
Query: 53 TNLERGVEYEFRIAGQNHIG-YGQETVRYYTTPEGPPTGPPANISHHFQTPDVVCITWDP 111
+LE E + + +G + A + D V +
Sbjct: 16 VSLEALEEVQVGENIEVGVGIDELVNAEAFAYDFTLNYDENAFEYVEAISDDGVFVNA-- 73
Query: 112 PLRTHRNGQIVLYNVKFHKKIDANNVIHRNTTQTKAVFS--NLEEGIEYSAEVQAITKA- 168
+ +G++ + + K V EG S ++
Sbjct: 74 --KKIEDGKVRVLVSSLTG-----EPLPAKEVLAKVVLRAEAKTEGSNLSVTNSSVGDGE 126
Query: 169 -------GPGPWSPKLSLMTARDMVRAPLGVKALATSDQSVEVWWKPVPAGRGKILGYQI 221
G + + +V KA + ++V V W P + GY +
Sbjct: 127 GLVHEIAGTEKTVNIIEGTSPEIVVNPVRDFKASEINKKNVTVTWTE-PETTEGLEGYIL 185
Query: 222 FYTMTAVEDLDEWSQKSIPLTESSNIARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEK 281
+ V ++ S L +
Sbjct: 186 YKDGKKVAEIG------------------------------------KDETSYTFKKLNR 209
Query: 282 FTEYAVAVAARTVNGLGRLSGKVTVK 307
T Y +AA+ NG +T++
Sbjct: 210 HTIYNFKIAAKYSNGEVSSKESLTLR 235
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.8 bits (105), Expect = 4e-05
Identities = 67/468 (14%), Positives = 135/468 (28%), Gaps = 144/468 (30%)
Query: 5 EPEVTIELVWSQPTQTYGEILGYRVKYGV-RE---HTLKENLVNSKNMSFLI-------- 52
+P + + Q + Y + + KY V R L++ L+ + ++
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFA-KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG 162
Query: 53 -TNLERGV--EYEFRIAGQNHIGYGQETVRYYTTPEGPPTGPPANISHHF-----QTPDV 104
T + V Y+ + I + ++ +PE + + D
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFW--LNLKNCNSPETVLE-MLQKLLYQIDPNWTSRSD- 218
Query: 105 VCITWDPPLRT---------------HRNGQIVLYNVKFHKKIDANNV-----IHRNTTQ 144
+ + LR + N +VL NV+ K +A N+ + TT+
Sbjct: 219 --HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL---TTR 273
Query: 145 TKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMTARDMVRAPLGVKALATSDQSVEV 204
K V L +SL D L T D+ +
Sbjct: 274 FKQVTDFLSAATTT-----------------HISL----DHHSMTL------TPDEVKSL 306
Query: 205 WWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTES-------SNIARI-FYTMTA 256
K L +DL + P S +A +
Sbjct: 307 L--------LKYLD-------CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN 351
Query: 257 VEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLSGKVTVKV-------- 308
+ L + S+ + E AE + F +V S + +
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKM--FDRLSVF----------PPSAHIPTILLSLIWFDV 399
Query: 309 KPEDVPLSLRAHDVSTHSMTLSWSPPIKLN-PVKYKEVSEKIQERR------LQKYGQYR 361
DV + + + + +S+ ++ P Y E+ K++ + Y +
Sbjct: 400 IKSDVMVVV--NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK 457
Query: 362 YFETRDE----------SYIGKRVERMEVRGRKGRGRPKK----RWMD 395
F++ D S+IG ++ +E + R+++
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIGHHLKNIE-HPERMTLFRMVFLDFRFLE 504
Score = 34.8 bits (79), Expect = 0.064
Identities = 29/210 (13%), Positives = 60/210 (28%), Gaps = 61/210 (29%)
Query: 6 PEVTIELVWSQ-PTQTYGEILGYRVKYGVRE----------HTL----KENLVNSKNM-S 49
P + + L+W ++ KY + E ++ K L N +
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447
Query: 50 FLIT--NLERGVEYEFRIAGQ------NHIGY-------GQET----------------V 78
++ N+ + + + I +HIG+ + +
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI 507
Query: 79 RYYTTPEGPPTGPPANISHHFQTPDVVC----ITWDPPLRTHRNGQIVLYNVKFHKKIDA 134
R+ + +I + Q + I + P I + F KI+
Sbjct: 508 RH----DSTAWNASGSILNTLQ--QLKFYKPYICDNDPKYERLVNAI----LDFLPKIEE 557
Query: 135 NNVIHRNTTQTKAVFSNLEEGIEYSAEVQA 164
N + + T + +E I A Q
Sbjct: 558 NLICSKYTDLLRIALMAEDEAIFEEAHKQV 587
Score = 33.3 bits (75), Expect = 0.18
Identities = 50/374 (13%), Positives = 98/374 (26%), Gaps = 110/374 (29%)
Query: 97 HHFQTPDVVCITWDPPLRTHRNGQIVLYNV-KFHKKIDANNVIHRNTTQTKAVFSNLEEG 155
HH D ++ ++ I+ F D +V K++ S
Sbjct: 2 HHHHHMD-----FETGEHQYQYKDILSVFEDAFVDNFDCKDV----QDMPKSILS----- 47
Query: 156 IEYSAEVQAITKAGPGPWSPKLSLMTARDMVRAPLGVKALATSDQSVEVW-WKPV----- 209
E+ I + S L L + + K + + + P+
Sbjct: 48 ---KEEIDHIIMS-KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR 103
Query: 210 -PAGRGKILGY---------QIF--YTMTAVEDLDEWSQKSIPLTESSNIARIFYTMTAV 257
P+ ++ Q+F Y ++ ++ + Q + L + N+ + +
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV--LIDGVLG- 160
Query: 258 EDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLGRLSGKV---TVK--VKPED 312
S K+ + + ++ K+ +K PE
Sbjct: 161 ------SGKTW----------V-------ALDVCLSYKVQCKMDFKIFWLNLKNCNSPET 197
Query: 313 VP---LSLRAHDVSTHSMTLSWSPPIKLNPVKYKEVSEKIQERRLQKYGQY--------- 360
V L + S IKL + ++ RRL K Y
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLR---IHSIQAEL--RRLLKSKPYENCLLVLLN 252
Query: 361 -------RYFE--------TRDESYI-----GKRVERMEVRGRKGRGRPKK-----RWMD 395
F TR + + +++D
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 396 CVNQDLGEKNLTGH 409
C QDL + LT +
Sbjct: 313 CRPQDLPREVLTTN 326
>3dlq_R Interleukin-22 receptor subunit alpha-1; cytokine-receptor complex,
fibronectin-III, cytokine, glycoprotein, polymorphism,
secreted, membrane; 1.90A {Homo sapiens} PDB: 3dgc_R*
Length = 211
Score = 41.6 bits (97), Expect = 2e-04
Identities = 26/217 (11%), Positives = 60/217 (27%), Gaps = 38/217 (17%)
Query: 84 PEGPPTGPPANI---SHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDAN--NVI 138
PE P ++ S +F+ +TWD +Y++++ + +
Sbjct: 1 PEDPS-DLLQHVKFQSSNFEN----ILTWDSG---PEGTPDTVYSIEYKTYGERDWVAKK 52
Query: 139 H-RNTTQTKAVFSN--LEEGIEYSAEVQAITKAGPGPWSPKLSLMTARDMVRAPLGVKAL 195
+ T+ + Y A V A++ G + + P V
Sbjct: 53 GCQRITRKSCNLTVETGNLTELYYARVTAVSAGGRSATKMTDRFSSLQHTTLKPPDVT-C 111
Query: 196 ATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNIARIFYTMT 255
+ +S+++ P P G+++ +I +
Sbjct: 112 ISKVRSIQMIVHPTPTPIRAGDGHRLTL---------------------EDIFHDLFYHL 150
Query: 256 AVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAAR 292
++ + E L TE+ +
Sbjct: 151 ELQVNRTYQMHLGGKQREYEFFGLTPDTEFLGTIMIL 187
Score = 32.4 bits (73), Expect = 0.18
Identities = 24/181 (13%), Positives = 42/181 (23%), Gaps = 20/181 (11%)
Query: 12 LVWSQPTQTYGEILGYRVKY---GVREHTLKENLVNSKNMSFLITN--LERGVEYEFRIA 66
L W Y ++Y G R+ K+ S +T Y R+
Sbjct: 22 LTW-DSGPEGTPDTVYSIEYKTYGERDWVAKKGCQRITRKSCNLTVETGNLTELYYARVT 80
Query: 67 GQNHIGYGQET-----VRYYTTPEGPP----TGPPANISHHFQTPDVVCITWDPPLRTHR 117
+ G T PP +I D T
Sbjct: 81 AVSAGGRSATKMTDRFSSLQHTTLKPPDVTCISKVRSIQMIVHPTPTPIRAGDGHRLTLE 140
Query: 118 N-GQIVLYNVKFHKKIDANNVIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGP--GPWS 174
+ + Y+++ +H Q + F L E+ + +
Sbjct: 141 DIFHDLFYHLELQVN--RTYQMHLGGKQREYEFFGLTPDTEFLGTIMILVPTWAKESAPY 198
Query: 175 P 175
Sbjct: 199 M 199
>1uc6_A CNTF receptor, ciliary neurotrophic factor receptor alpha;
cytokine, leukemia inhibitory factor, cytokine receptor;
NMR {Homo sapiens} SCOP: b.1.2.1
Length = 109
Score = 39.6 bits (92), Expect = 2e-04
Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 4/87 (4%)
Query: 91 PPANISHHF--QTPDVVCITWDPPLRTHRNGQIVL-YNVKFHKKIDANNVIHRNTTQTKA 147
PP N+ P + +TW P L + +++ I + T
Sbjct: 10 PPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHVELSNGTAH 69
Query: 148 VFSNLEEGIEYSAEVQAITKAGPGPWS 174
++ G EY +V A G WS
Sbjct: 70 TITDAYAGKEYIIQVAAKDN-EIGTWS 95
Score = 35.7 bits (82), Expect = 0.004
Identities = 13/69 (18%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 10 IELVWSQPTQTY---GEILGYRVKYGVREHTLKENLVNSKNMSFLITNLERGVEYEFRIA 66
+E+ W P+ L + ++Y +++ S + IT+ G EY ++A
Sbjct: 26 LEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHVELSNGTAHTITDAYAGKEYIIQVA 85
Query: 67 GQNHIGYGQ 75
+++ G
Sbjct: 86 AKDN-EIGT 93
Score = 29.6 bits (66), Expect = 0.67
Identities = 15/106 (14%), Positives = 31/106 (29%), Gaps = 35/106 (33%)
Query: 190 LGVKALATSDQSVEVWWKP---VPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSN 246
+ + + ++ + +EV W+ P L + + Y
Sbjct: 14 VVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRY----------------------- 50
Query: 247 IARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAAR 292
LD+W + + +T EY + VAA+
Sbjct: 51 ---------RPLILDQWQHVELSNGTAHTITDAYAGKEYIIQVAAK 87
>3cxe_C Granulocyte-macrophage colony-stimulating factor subunit alpha;
GM-CSF, receptor complex, dodecamer, disease mutation,
glyco membrane; HET: NAG BMA; 3.30A {Homo sapiens}
Length = 120
Score = 37.8 bits (87), Expect = 0.001
Identities = 15/93 (16%), Positives = 33/93 (35%), Gaps = 9/93 (9%)
Query: 91 PPANISHHFQTPDVVCITWDPPLRTHRNGQIVL-YNVKFHKKIDANN-----VIHRNTTQ 144
PP+N++ T + + W P + + Y + H+K + +
Sbjct: 20 PPSNVTVRCNTTHCL-VRWKQPRTYQKLSYLDFQYQLDVHRKNTQPGTENLLINVSGDLE 78
Query: 145 TKAVFSNLEEGIEYSAEVQAITKAGP--GPWSP 175
+ F + E ++S +++A WS
Sbjct: 79 NRYNFPSSEPRAKHSVKIRAADVRILNWSSWSE 111
>2dle_A Receptor-type tyrosine-protein phosphatase ETA; protein-tyrosine
phosphatase ETA, R-PTP-ETA, HPTP ETA, protein-tyrosine
phosphatase receptor type J; NMR {Homo sapiens}
Length = 104
Score = 37.0 bits (85), Expect = 0.001
Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 6/84 (7%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYGVREHTLKENLVNSKNMSFLITNLERGVEYEFRIAGQ 68
++ L+W Y++ V T NL N +I L Y +
Sbjct: 23 SLTLIWKVSDNESSSNYTYKIH--VAGETDSSNL-NVSEPRAVIPGLRSSTFYNITVCPV 79
Query: 69 NHIGYGQ-ETVRYYTTPEGPPTGP 91
G ++ +T P P+GP
Sbjct: 80 LGDIEGTPGFLQVHTPPV--PSGP 101
Score = 28.5 bits (63), Expect = 1.5
Identities = 15/111 (13%), Positives = 27/111 (24%), Gaps = 35/111 (31%)
Query: 188 APLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKSIPLTESSNI 247
V A+ S S+ + WK Y+I + ++ + +
Sbjct: 10 QVFDVTAVNISATSLTLIWKVSDNESSSNYTYKI-----------HVAGETDSSNLNVSE 58
Query: 248 ARIFYTMTAVEDLDEWSQKSVPLTESAELTSLEKFTEYAVAVAARTVNGLG 298
R A + L T Y + V + G
Sbjct: 59 PR------------------------AVIPGLRSSTFYNITVCPVLGDIEG 85
Score = 27.0 bits (59), Expect = 5.4
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 314 PLSLRAHDVSTHSMTLSWSPPIKLNPVKY 342
+ A ++S S+TL W + Y
Sbjct: 11 VFDVTAVNISATSLTLIWKVSDNESSSNY 39
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 39.0 bits (91), Expect = 0.003
Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 5/70 (7%)
Query: 9 TIELVWSQPTQTYG-EILGYRVKYGVREHTLKE--NLVNSKNMSFLITNLERGVEYEFRI 65
+ L W P G + Y ++ RE S+ I L G +YEFRI
Sbjct: 25 AVILSWKPPALDGGSLVTNYTIEK--REAMGGSWSPCAKSRYTYTTIEGLRAGKQYEFRI 82
Query: 66 AGQNHIGYGQ 75
+N G +
Sbjct: 83 IAENKHGQSK 92
Score = 31.7 bits (72), Expect = 0.50
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 303 KVTVKVKPEDVPLSLRAHDVSTHSMTLSWSPP 334
V +P + P ++ ++ LSW PP
Sbjct: 3 MVADVPEP-EPPRFPIIENILDEAVILSWKPP 33
Score = 28.3 bits (63), Expect = 6.5
Identities = 17/87 (19%), Positives = 29/87 (33%), Gaps = 7/87 (8%)
Query: 87 PPTGPPA-NISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANNVIHRNTTQT 145
PP P NI + V ++W PP + Y ++ + + + + T
Sbjct: 12 PPRFPIIENIL-----DEAVILSWKPPALDG-GSLVTNYTIEKREAMGGSWSPCAKSRYT 65
Query: 146 KAVFSNLEEGIEYSAEVQAITKAGPGP 172
L G +Y + A K G
Sbjct: 66 YTTIEGLRAGKQYEFRIIAENKHGQSK 92
>3tgx_A Interleukin-21 receptor; class I cytokine, class I cytokine
receptor, sugarbridge, fibronectine domain, signaling,
cytokine-cytokine receptor; HET: MAN FUL NAG BMA FUC;
2.80A {Homo sapiens}
Length = 219
Score = 37.4 bits (86), Expect = 0.004
Identities = 14/99 (14%), Positives = 30/99 (30%), Gaps = 14/99 (14%)
Query: 7 EVTIELVWSQPTQTYGEI-LGYRVKYGVREHT------LKENLVNSKNMSFLITNLERGV 59
+++ + P + L Y ++Y R K V+S+++S L +
Sbjct: 116 QISWRSDYEDPAFYMLKGKLQYELQYRNRGDPWAVSPRRKLISVDSRSVSLLPLEFRKDS 175
Query: 60 EYEFRIAGQNHIGYGQETV-------RYYTTPEGPPTGP 91
YE ++ G + + T
Sbjct: 176 SYELQVRAGPMPGSSYQGTWSEWSDPVIFQTQSEELKEH 214
Score = 36.7 bits (84), Expect = 0.008
Identities = 16/109 (14%), Positives = 33/109 (30%), Gaps = 17/109 (15%)
Query: 91 PPANISHHFQTPDVVCITWDPPLRTHRNGQIVL---YNVKFHKKIDANNV------IHRN 141
PP +++ F I+W + Y +++ + D V I +
Sbjct: 103 PPFDVTVTF--SGQYQISWRSDYEDPAFYMLKGKLQYELQYRNRGDPWAVSPRRKLISVD 160
Query: 142 TTQTKAVFSNLEEGIEYSAEVQAITKAGPG------PWSPKLSLMTARD 184
+ + + Y +V+A G WS + T +
Sbjct: 161 SRSVSLLPLEFRKDSSYELQVRAGPMPGSSYQGTWSEWSDPVIFQTQSE 209
>1wft_A 1700129L13RIK protein; FN3 domain, similar to HOST cell factor 2,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.1.2.1
Length = 123
Score = 36.0 bits (82), Expect = 0.005
Identities = 24/102 (23%), Positives = 37/102 (36%), Gaps = 20/102 (19%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYGVREHTLKEN-----------------LVNSKNMSFL 51
I L W PT G IL Y +R +++N V + ++
Sbjct: 22 GIHLSWEPPTSPSGNILEYSAYLAIRTAQMQDNPSQLVFMRIYCGLKTSCTVTAGQLANA 81
Query: 52 ITNLERGVEYEFRIAGQNHIGYGQET-VRYYTTPE--GPPTG 90
+ FRI+ +N GYG T +R+ GP +G
Sbjct: 82 HIDYTSRPAIVFRISAKNEKGYGPATQIRWLQGNSKSGPSSG 123
Score = 28.7 bits (63), Expect = 1.8
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 188 APLGVKALATSDQSVEVWWKPVPAGRGKILGYQIFYTMTAVEDLDEWSQKS 238
AP V+ D + + W+P + G IL Y + + + D SQ
Sbjct: 10 APSTVRISKNVD-GIHLSWEPPTSPSGNILEYSAYLAIRTAQMQDNPSQLV 59
>1k85_A Chitinase A1; fibronectin type III domain, chitin binding domain,
carbohydrase, horizontal gene transfer, hydrolase; NMR
{Bacillus circulans} SCOP: b.1.2.1
Length = 88
Score = 34.6 bits (80), Expect = 0.009
Identities = 23/96 (23%), Positives = 35/96 (36%), Gaps = 11/96 (11%)
Query: 87 PPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANNVIHRNTTQTK 146
PT P N++ QT + ++W N + Y+V + T T
Sbjct: 3 APT-APTNLASTAQTTSSITLSWTAS---TDNVGVTGYDVY------NGTALATTVTGTT 52
Query: 147 AVFSNLEEGIEYSAEVQAITKAG-PGPWSPKLSLMT 181
A S L Y+ V+A AG S +S+ T
Sbjct: 53 ATISGLAADTSYTFTVKAKDAAGNVSAASNAVSVKT 88
Score = 27.6 bits (62), Expect = 1.9
Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 188 APLGVKALATSDQSVEVWWKPVPAGRGKILGYQIF 222
AP + + A + S+ + W G + GY ++
Sbjct: 6 APTNLASTAQTTSSITLSWTASTDNVG-VTGYDVY 39
Score = 27.2 bits (61), Expect = 2.7
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 313 VPLSLRAHDVSTHSMTLSWSPP 334
P +L + +T S+TLSW+
Sbjct: 6 APTNLASTAQTTSSITLSWTAS 27
Score = 25.7 bits (57), Expect = 9.1
Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 9/58 (15%)
Query: 9 TIELVWSQPTQTYGEILGYRV-KYGVREHTLKENLVNSKNMSFLITNLERGVEYEFRI 65
+I L W+ T G + GY V T+ + I+ L Y F +
Sbjct: 19 SITLSWTASTDNVG-VTGYDVYNGTALATTVTGT-------TATISGLAADTSYTFTV 68
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 35.1 bits (79), Expect = 0.036
Identities = 19/117 (16%), Positives = 37/117 (31%), Gaps = 5/117 (4%)
Query: 61 YEFRIAGQNHIGYGQETVRYYTTPEGPPTGPPANISHHFQTPDVVCITWDPPLR--THRN 118
E + + + Y Q T ++ P P + V ++W+ P T +
Sbjct: 186 IEVMVDAVHKLKYEQYTSSFFIRDIIKPDPPKNLQLKPLKNSRQVEVSWEYPDTWSTPHS 245
Query: 119 GQIVLYNVKFHKKIDANNVIHRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSP 175
+ + V+ K T +T + + S V+A + WS
Sbjct: 246 YFSLTFCVQVQGKSKREKKDRVFTDKTS---ATVICRKNASISVRAQDRYYSSSWSE 299
Score = 29.7 bits (65), Expect = 1.9
Identities = 10/70 (14%), Positives = 21/70 (30%), Gaps = 7/70 (10%)
Query: 10 IELVWSQP----TQTYGEILGYRVKYGVREHTLKENLVNSKNMSFLITNLERGVEYEFRI 65
+E+ W P T L + V+ + K++ V + S + +
Sbjct: 230 VEVSWEYPDTWSTPHSYFSLTFCVQVQGKSKREKKDRVFTDKTSA---TVICRKNASISV 286
Query: 66 AGQNHIGYGQ 75
Q+
Sbjct: 287 RAQDRYYSSS 296
>1oww_A FN, fibronectin first type III module, CIG; fibronectin type III
module, structural protein; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 98
Score = 32.9 bits (74), Expect = 0.038
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Query: 9 TIELVWS--QPTQTYGEILGYRVKYGVREHTLKENLVNSKNMSFLITNLERGVEYEFRIA 66
+ + W+ QP+ IL +R K KE + S+ I L+ GV YE ++
Sbjct: 22 SHPIQWNAPQPSHISKYILRWRPKNS--VGRWKEATIPGHLNSYTIKGLKPGVVYEGQLI 79
Query: 67 GQNHIGYGQETVRYYTT 83
G+ + T +TT
Sbjct: 80 SIQQYGHQEVTRFDFTT 96
Score = 28.6 bits (63), Expect = 1.2
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 5/89 (5%)
Query: 86 GPPTGPPAN---ISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANNVIHRNT 142
GP I+ P+ I W+ P +H + I+ + K I +
Sbjct: 1 GPLGSSGPVEVFITETPSQPNSHPIQWNAPQPSHISKYILRWRPKNSVGRWKEATIPGHL 60
Query: 143 TQTKAVFSNLEEGIEYSAEVQAITKAGPG 171
L+ G+ Y ++ +I + G
Sbjct: 61 NSY--TIKGLKPGVVYEGQLISIQQYGHQ 87
>3mpc_A FN3-like protein; fibronectin, FN(III), unknown function; 1.60A
{Clostridium thermocellum}
Length = 103
Score = 31.2 bits (71), Expect = 0.15
Identities = 22/100 (22%), Positives = 34/100 (34%), Gaps = 10/100 (10%)
Query: 83 TPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDAN-NVIHRN 141
+ PTG A + + + +TW+ G YNVK K I N
Sbjct: 3 SAPAFPTGLSAVLD---SSGNTANLTWNAA-----PG-ANSYNVKRSTKSGGPYTTIATN 53
Query: 142 TTQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSLMT 181
T T + + G +Y V A++ S + L
Sbjct: 54 ITSTNYTDTGVATGTKYYYVVSAVSNGVETLNSAEAILQY 93
Score = 27.8 bits (62), Expect = 2.3
Identities = 10/67 (14%), Positives = 23/67 (34%), Gaps = 5/67 (7%)
Query: 9 TIELVWSQPTQTYGEILGYRVKYGVREHTLKENLV-NSKNMSFLITNLERGVEYEFRIAG 67
T L W+ Y VK + + N + ++ T + G +Y + ++
Sbjct: 21 TANLTWNAAP----GANSYNVKRSTKSGGPYTTIATNITSTNYTDTGVATGTKYYYVVSA 76
Query: 68 QNHIGYG 74
++
Sbjct: 77 VSNGVET 83
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 32.1 bits (72), Expect = 0.24
Identities = 14/86 (16%), Positives = 31/86 (36%), Gaps = 25/86 (29%)
Query: 346 SEKIQERRLQKYGQYRYFETRDESYIGKRVERMEVRGRKGRGRPKKRWMDCVNQDLGE-- 403
E I++ R E + + R++ + ++ W + +DL E
Sbjct: 84 PESIRKWR----------EEQRK--------RLQELDAASK-VMEQEWREKAKKDLEEWN 124
Query: 404 ----KNLTGHEAHNRAAWKRLTRNAD 425
+ + ++ +NR A K + D
Sbjct: 125 QRQSEQVEKNKINNRIADKAFYQQPD 150
>1q38_A Fibronectin; amyloid fibril, anastellin, extracellular matrix,
dynamic fluctuations, conformational exchange, chaps,
cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 89
Score = 30.1 bits (67), Expect = 0.35
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 2/83 (2%)
Query: 16 QPTQTYGEILGYRVKYGVREHTLKENLVNSKNMSFLITNLERGVEYEFRIAGQNHIGYGQ 75
QP+ IL +R K KE + S+ I L+ GV YE ++ G+ +
Sbjct: 8 QPSHISKYILRWRPK--NSVGRWKEATIPGHLNSYTIKGLKPGVVYEGQLISIQQYGHQE 65
Query: 76 ETVRYYTTPEGPPTGPPANISHH 98
T +TT G ++ HH
Sbjct: 66 VTRFDFTTTSTSTPGSRSHHHHH 88
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2,
autoinhibition, ITAM, hydrogen bonding network, TCR
signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Length = 613
Score = 31.5 bits (71), Expect = 0.60
Identities = 13/95 (13%), Positives = 24/95 (25%), Gaps = 1/95 (1%)
Query: 80 YYTTPEGPPTGPPANISHHFQTPDVVCIT-WDPPLRTHRNGQIVLYNVKFHKKIDANNVI 138
Y GP + + PD + P R + + V
Sbjct: 69 YAIAGGKAHCGPAELCEFYSRDPDGLPCNLRKPCNRPSGLEPQPGVFDCLRDAMVRDYVR 128
Query: 139 HRNTTQTKAVFSNLEEGIEYSAEVQAITKAGPGPW 173
+ +A+ + ++ A T PW
Sbjct: 129 QTWKLEGEALEQAIISQAPQVEKLIATTAHERMPW 163
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function;
1.80A {Homo sapiens} PDB: 3ch8_A
Length = 195
Score = 29.9 bits (66), Expect = 1.3
Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 3/97 (3%)
Query: 83 TPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANNVIHRNT 142
G + P N+ TP + I+WD +I + + V +
Sbjct: 98 GGSGGVSSVPTNLEVVAATPTSLLISWDASYYGVSYYRITYGETGGNSPVQEFTVPY--- 154
Query: 143 TQTKAVFSNLEEGIEYSAEVQAITKAGPGPWSPKLSL 179
+ + A S L+ G++Y+ V A + +S+
Sbjct: 155 SSSTATISGLKPGVDYTITVYAYSDYYGSHHYSPISI 191
>1fyh_B Interferon-gamma receptor alpha chain; cytokine-receptor complex,
fibronectin type-III, immune system; 2.04A {Homo
sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1fg9_C 1jrh_I
Length = 229
Score = 29.4 bits (65), Expect = 1.9
Identities = 11/103 (10%), Positives = 27/103 (26%), Gaps = 8/103 (7%)
Query: 87 PPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIVLYNVKFHKKIDANNVIHRNTTQTK 146
P + P+ C + NG + Y + K+ D + Q +
Sbjct: 131 PSVFVNGDEQEVDYDPETTCYIRVYNVYVRMNGSEIQYKILTQKEDD------CDEIQCQ 184
Query: 147 AVFSNLEEGIEYSAEVQAITKAGP--GPWSPKLSLMTARDMVR 187
+Y + + S ++ + ++
Sbjct: 185 LAIPVSSLNSQYCVSAEGVLHVWGVTTEKSKEVCITIFNSSIK 227
>3s9d_B Interferon alpha/beta receptor 2; human, type I interferons, IFNA2,
ifnar2, SUB-complex of the interferon signaling complex;
2.00A {Homo sapiens} PDB: 1n6u_A 1n6v_A 2hym_A 2ksx_B
2kz1_B 2lag_B 3se4_C* 3se3_C* 3s8w_A*
Length = 199
Score = 28.5 bits (63), Expect = 3.1
Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 4/56 (7%)
Query: 6 PEVTIELVWSQPTQTYGEILGYRVKYGVREHTLKENLVNSKNMSFLITNLERGVEY 61
P + E + + E VK H + S N +++I L Y
Sbjct: 122 PSIVEEELQFDLSLVIEEQSEGIVKK----HKPEIKGNMSGNFTYIIDKLIPNTNY 173
>3og6_B Interleukin 28 receptor, alpha (interferon, lambd receptor);
helical bundle, fibronectin type III domain,
beta-sandwich, signaling, membrane; HET: BMA NAG; 2.10A
{Homo sapiens} PDB: 3og4_B*
Length = 226
Score = 27.7 bits (61), Expect = 6.4
Identities = 28/175 (16%), Positives = 52/175 (29%), Gaps = 15/175 (8%)
Query: 12 LVWSQPTQTYGEILGYRVKY----GVREHTLKENLVNSKNMSFLITNLERG---VEYEFR 64
L W P + + Y V Y R E +K + + L++ +++ R
Sbjct: 23 LTW-LPGLGNPQDVTYFVAYQSSPTRRRWREVEECAGTKELLCSMMCLKKQDLYNKFKGR 81
Query: 65 IAGQNHIGYGQ--ETVRYYTTPEGPPTGPPANISHHFQTPDVVCITWDPPLRTHRNGQIV 122
+ + E+ E P PP + + T+ P +
Sbjct: 82 VRTVSPSSKSPWVESEYLDYLFEVEP-APPVLVLTQTEEILSANATYQLPPCMP--PLDL 138
Query: 123 LYNVKFHKKIDANNVIHRNTTQTKAVFSNLE--EGIEYSAEVQAITKAGPGPWSP 175
Y V F K+ N + T + V L+ + + I +S
Sbjct: 139 KYEVAFWKEGAGNKTLFPVTPHGQPVQITLQPAASEHHCLSARTIYTFSVPKYSK 193
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.132 0.394
Gapped
Lambda K H
0.267 0.0473 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,696,499
Number of extensions: 405703
Number of successful extensions: 1967
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1390
Number of HSP's successfully gapped: 521
Length of query: 427
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 331
Effective length of database: 4,021,377
Effective search space: 1331075787
Effective search space used: 1331075787
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.1 bits)