BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8777
(291 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UNB|G Chain G, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|U Chain U, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|II Chain i, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|WW Chain w, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|G Chain G, Mouse Constitutive 20s Proteasome
pdb|3UNE|U Chain U, Mouse Constitutive 20s Proteasome
pdb|3UNE|II Chain i, Mouse Constitutive 20s Proteasome
pdb|3UNE|WW Chain w, Mouse Constitutive 20s Proteasome
pdb|3UNF|G Chain G, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|U Chain U, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|G Chain G, Mouse 20s Immunoproteasome
pdb|3UNH|U Chain U, Mouse 20s Immunoproteasome
Length = 246
Score = 312 bits (799), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 141/196 (71%), Positives = 168/196 (85%)
Query: 96 AGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTV 155
AGFDRHITIFSPEGRLYQVEYAFKAINQGG+TSVAV+G D AV+ T+KKVPD L+D TV
Sbjct: 7 AGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTV 66
Query: 156 TNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYT 215
T+L+ +T ++GCVMTGM ADSR QVQRARYEAA++KYK+GY +P+D LC RIADISQVYT
Sbjct: 67 THLFKITESIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYT 126
Query: 216 QNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKKK 275
QNAEMRPLGC MILI DE +GP +YK DPAGYYC FKA + GVK TE+ S+LEKK KKK
Sbjct: 127 QNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKK 186
Query: 276 TNYTGDETIQLAISCL 291
++T ++T++ AI+CL
Sbjct: 187 FDWTFEQTVETAITCL 202
Score = 162 bits (409), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 75/95 (78%), Positives = 85/95 (89%)
Query: 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSL 60
MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGG+TSVAV+G D AV+ T+KKVPD L
Sbjct: 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKL 60
Query: 61 VDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRAR 95
+D TVT+L+ +T ++GCVMTGM ADSR QVQRAR
Sbjct: 61 LDSSTVTHLFKITESIGCVMTGMTADSRSQVQRAR 95
>pdb|1IRU|A Chain A, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|O Chain O, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 246
Score = 311 bits (797), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 141/196 (71%), Positives = 167/196 (85%)
Query: 96 AGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTV 155
AGFDRHITIFSPEGRLYQVEYAFKAINQGG+TSVAV+G D AV+ T+KKVPD L+D TV
Sbjct: 7 AGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTV 66
Query: 156 TNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYT 215
T+L+ +T +GCVMTGM ADSR QVQRARYEAA++KYK+GY +P+D LC RIADISQVYT
Sbjct: 67 THLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYT 126
Query: 216 QNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKKK 275
QNAEMRPLGC MILI DE +GP +YK DPAGYYC FKA + GVK TE+ S+LEKK KKK
Sbjct: 127 QNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKK 186
Query: 276 TNYTGDETIQLAISCL 291
++T ++T++ AI+CL
Sbjct: 187 FDWTFEQTVETAITCL 202
Score = 161 bits (408), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 75/95 (78%), Positives = 84/95 (88%)
Query: 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSL 60
MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGG+TSVAV+G D AV+ T+KKVPD L
Sbjct: 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKL 60
Query: 61 VDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRAR 95
+D TVT+L+ +T +GCVMTGM ADSR QVQRAR
Sbjct: 61 LDSSTVTHLFKITENIGCVMTGMTADSRSQVQRAR 95
>pdb|1RYP|A Chain A, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|O Chain O, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|G Chain G, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|U Chain U, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|G Chain G, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|G Chain G, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|U Chain U, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|G Chain G, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|U Chain U, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|G Chain G, Proteasome Inhibition By Fellutamide B
pdb|3D29|U Chain U, Proteasome Inhibition By Fellutamide B
pdb|3E47|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|G Chain G, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|U Chain U, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|G Chain G, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|U Chain U, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|G Chain G, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|U Chain U, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|1VSY|A Chain A, Proteasome Activator Complex
pdb|1VSY|O Chain O, Proteasome Activator Complex
pdb|3L5Q|A Chain A, Proteasome Activator Complex
pdb|3L5Q|C Chain C, Proteasome Activator Complex
pdb|3MG4|G Chain G, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|U Chain U, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|G Chain G, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|U Chain U, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|G Chain G, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|U Chain U, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|G Chain G, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|U Chain U, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|G Chain G, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|U Chain U, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SDI|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|G Chain G, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|U Chain U, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|G Chain G, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|U Chain U, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|G Chain G, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|U Chain U, 20s Yeast Proteasome In Complex With Glidobactin
Length = 243
Score = 203 bits (517), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 105/201 (52%), Positives = 140/201 (69%), Gaps = 5/201 (2%)
Query: 96 AGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTV 155
AG+DRHITIFSPEGRLYQVEYAFKA NQ + S+AV+G D VV ++KKVPD L+DP TV
Sbjct: 1 AGYDRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTV 60
Query: 156 TNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYT 215
+ ++ ++ T+G V+ G D+R RA+ EAA F+YK+GY MP D L R+A++SQ+YT
Sbjct: 61 SYIFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYT 120
Query: 216 QNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKK- 274
Q A MRPLG + +S DE GP IYKTDPAGYY +KA + G K E + LE FKK
Sbjct: 121 QRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKKS 180
Query: 275 KTNYTGDET----IQLAISCL 291
K ++ +E+ ++ AI+ +
Sbjct: 181 KIDHINEESWEKVVEFAITHM 201
Score = 108 bits (269), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 49/82 (59%), Positives = 64/82 (78%)
Query: 7 AGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTV 66
AG+DRHITIFSPEGRLYQVEYAFKA NQ + S+AV+G D VV ++KKVPD L+DP TV
Sbjct: 1 AGYDRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTV 60
Query: 67 TNLYSLTPTVGCVMTGMQADSR 88
+ ++ ++ T+G V+ G D+R
Sbjct: 61 SYIFCISRTIGMVVNGPIPDAR 82
>pdb|1G0U|G Chain G, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|U Chain U, A Gated Channel Into The Proteasome Core Particle
pdb|1FNT|A Chain A, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|O Chain O, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|A Chain A, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|O Chain O, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|G Chain G, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|U Chain U, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|G Chain G, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|U Chain U, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3NZJ|G Chain G, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|U Chain U, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3MG6|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3UN4|G Chain G, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|U Chain U, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|G Chain G, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|U Chain U, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4B4T|A Chain A, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|A Chain A, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4INR|G Chain G, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|U Chain U, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|G Chain G, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|U Chain U, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|G Chain G, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|U Chain U, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 252
Score = 199 bits (507), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 103/199 (51%), Positives = 138/199 (69%), Gaps = 5/199 (2%)
Query: 98 FDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTN 157
+DRHITIFSPEGRLYQVEYAFKA NQ + S+AV+G D VV ++KKVPD L+DP TV+
Sbjct: 12 YDRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSY 71
Query: 158 LYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQN 217
++ ++ T+G V+ G D+R RA+ EAA F+YK+GY MP D L R+A++SQ+YTQ
Sbjct: 72 IFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQR 131
Query: 218 AEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKK-KT 276
A MRPLG + +S DE GP IYKTDPAGYY +KA + G K E + LE FKK K
Sbjct: 132 AYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKKSKI 191
Query: 277 NYTGDET----IQLAISCL 291
++ +E+ ++ AI+ +
Sbjct: 192 DHINEESWEKVVEFAITHM 210
Score = 104 bits (259), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 47/80 (58%), Positives = 62/80 (77%)
Query: 9 FDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTN 68
+DRHITIFSPEGRLYQVEYAFKA NQ + S+AV+G D VV ++KKVPD L+DP TV+
Sbjct: 12 YDRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSY 71
Query: 69 LYSLTPTVGCVMTGMQADSR 88
++ ++ T+G V+ G D+R
Sbjct: 72 IFCISRTIGMVVNGPIPDAR 91
>pdb|3H4P|A Chain A, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|B Chain B, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|C Chain C, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|D Chain D, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|E Chain E, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|F Chain F, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|G Chain G, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|H Chain H, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|I Chain I, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|J Chain J, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|K Chain K, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|L Chain L, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|M Chain M, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|N Chain N, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
Length = 264
Score = 142 bits (357), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 119/196 (60%), Gaps = 4/196 (2%)
Query: 96 AGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTV 155
+ +DR IT+FSPEGRLYQVEYA +A+ +G T++ + D V+A ++++ LV +++
Sbjct: 10 SAYDRAITVFSPEGRLYQVEYAREAVRRG-TTAIGIACKDGVVLAVDRRITSKLVKIRSI 68
Query: 156 TNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYT 215
++ + V +G+ AD+R + RAR EA ++ +G + I+ L +I DI Q YT
Sbjct: 69 EKIFQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYT 128
Query: 216 QNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKKK 275
Q+ +RP G S+++ D+NE L ++TDP+G +KA ++G LEK+++
Sbjct: 129 QHGGVRPFGVSLLIAGIDKNEARL-FETDPSGALIEYKATAIGSGRPVVMELLEKEYRD- 186
Query: 276 TNYTGDETIQLAISCL 291
+ T DE ++LAI+ L
Sbjct: 187 -DITLDEGLELAITAL 201
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Query: 7 AGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTV 66
+ +DR IT+FSPEGRLYQVEYA +A+ + G T++ + D V+A ++++ LV +++
Sbjct: 10 SAYDRAITVFSPEGRLYQVEYAREAVRR-GTTAIGIACKDGVVLAVDRRITSKLVKIRSI 68
Query: 67 TNLYSLTPTVGCVMTGMQADSRYQVQRAR 95
++ + V +G+ AD+R + RAR
Sbjct: 69 EKIFQIDDHVAAATSGLVADARVLIDRAR 97
>pdb|1RYP|C Chain C, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|Q Chain Q, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|B Chain B, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|P Chain P, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|B Chain B, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|W Chain W, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|B Chain B, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|P Chain P, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|B Chain B, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|P Chain P, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|B Chain B, Proteasome Inhibition By Fellutamide B
pdb|3D29|P Chain P, Proteasome Inhibition By Fellutamide B
pdb|3E47|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|B Chain B, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|P Chain P, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|B Chain B, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|P Chain P, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|B Chain B, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|P Chain P, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3MG4|B Chain B, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|P Chain P, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|B Chain B, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|P Chain P, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|B Chain B, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|P Chain P, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3TDD|B Chain B, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|P Chain P, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|B Chain B, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|P Chain P, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|4GK7|B Chain B, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|P Chain P, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|B Chain B, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|P Chain P, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|B Chain B, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|P Chain P, 20s Yeast Proteasome In Complex With Glidobactin
Length = 244
Score = 140 bits (353), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 72/195 (36%), Positives = 113/195 (57%), Gaps = 4/195 (2%)
Query: 98 FDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTN 157
+D TIFSPEGRLYQVEYA ++I+ G T++ + D V+A E+KV +L++ T T
Sbjct: 5 YDSRTTIFSPEGRLYQVEYALESISHAG-TAIGIMASDGIVLAAERKVTSTLLEQDTSTE 63
Query: 158 -LYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQ 216
LY L + + G+ AD+ + AR A ++ + +P++ L R++DI Q YTQ
Sbjct: 64 KLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQ 123
Query: 217 NAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKKKT 276
+ +RP G S I YD+ G +Y ++P+G Y +KA+SVG T+ A + L+ +K
Sbjct: 124 HGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDDM 183
Query: 277 NYTGDETIQLAISCL 291
D+ I+LA+ L
Sbjct: 184 KV--DDAIELALKTL 196
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 9 FDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTN 68
+D TIFSPEGRLYQVEYA ++I+ G T++ + D V+A E+KV +L++ T T
Sbjct: 5 YDSRTTIFSPEGRLYQVEYALESISHAG-TAIGIMASDGIVLAAERKVTSTLLEQDTSTE 63
Query: 69 -LYSLTPTVGCVMTGMQADSRYQVQRAR 95
LY L + + G+ AD+ + AR
Sbjct: 64 KLYKLNDKIAVAVAGLTADAEILINTAR 91
>pdb|1Z7Q|C Chain C, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|Q Chain Q, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|B Chain B, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|P Chain P, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|B Chain B, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|P Chain P, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3NZJ|B Chain B, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|P Chain P, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3UN4|B Chain B, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|P Chain P, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|B Chain B, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|P Chain P, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4B4T|C Chain C, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|C Chain C, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4INR|B Chain B, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|P Chain P, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|B Chain B, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|P Chain P, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|B Chain B, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|P Chain P, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 258
Score = 140 bits (353), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 72/195 (36%), Positives = 113/195 (57%), Gaps = 4/195 (2%)
Query: 98 FDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTN 157
+D TIFSPEGRLYQVEYA ++I+ G T++ + D V+A E+KV +L++ T T
Sbjct: 6 YDSRTTIFSPEGRLYQVEYALESISHAG-TAIGIMASDGIVLAAERKVTSTLLEQDTSTE 64
Query: 158 -LYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQ 216
LY L + + G+ AD+ + AR A ++ + +P++ L R++DI Q YTQ
Sbjct: 65 KLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQ 124
Query: 217 NAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKKKT 276
+ +RP G S I YD+ G +Y ++P+G Y +KA+SVG T+ A + L+ +K
Sbjct: 125 HGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDDM 184
Query: 277 NYTGDETIQLAISCL 291
D+ I+LA+ L
Sbjct: 185 KV--DDAIELALKTL 197
Score = 70.9 bits (172), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 58/101 (57%), Gaps = 2/101 (1%)
Query: 9 FDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTN 68
+D TIFSPEGRLYQVEYA ++I+ G T++ + D V+A E+KV +L++ T T
Sbjct: 6 YDSRTTIFSPEGRLYQVEYALESISHAG-TAIGIMASDGIVLAAERKVTSTLLEQDTSTE 64
Query: 69 -LYSLTPTVGCVMTGMQADSRYQVQRARAGFDRHITIFSPE 108
LY L + + G+ AD+ + AR ++ ++ +
Sbjct: 65 KLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNED 105
>pdb|1G0U|B Chain B, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|P Chain P, A Gated Channel Into The Proteasome Core Particle
pdb|1FNT|C Chain C, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|Q Chain Q, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|3MG6|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
Length = 245
Score = 140 bits (352), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 72/195 (36%), Positives = 113/195 (57%), Gaps = 4/195 (2%)
Query: 98 FDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTN 157
+D TIFSPEGRLYQVEYA ++I+ G T++ + D V+A E+KV +L++ T T
Sbjct: 6 YDSRTTIFSPEGRLYQVEYALESISHAG-TAIGIMASDGIVLAAERKVTSTLLEQDTSTE 64
Query: 158 -LYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQ 216
LY L + + G+ AD+ + AR A ++ + +P++ L R++DI Q YTQ
Sbjct: 65 KLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQ 124
Query: 217 NAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKKKT 276
+ +RP G S I YD+ G +Y ++P+G Y +KA+SVG T+ A + L+ +K
Sbjct: 125 HGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDDM 184
Query: 277 NYTGDETIQLAISCL 291
D+ I+LA+ L
Sbjct: 185 KV--DDAIELALKTL 197
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 9 FDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTN 68
+D TIFSPEGRLYQVEYA ++I+ G T++ + D V+A E+KV +L++ T T
Sbjct: 6 YDSRTTIFSPEGRLYQVEYALESISHAG-TAIGIMASDGIVLAAERKVTSTLLEQDTSTE 64
Query: 69 -LYSLTPTVGCVMTGMQADSRYQVQRAR 95
LY L + + G+ AD+ + AR
Sbjct: 65 KLYKLNDKIAVAVAGLTADAEILINTAR 92
>pdb|3OEU|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3SDI|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
Length = 235
Score = 137 bits (345), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 71/190 (37%), Positives = 111/190 (58%), Gaps = 4/190 (2%)
Query: 103 TIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTN-LYSL 161
TIFSPEGRLYQVEYA ++I+ G T++ + D V+A E+KV +L++ T T LY L
Sbjct: 1 TIFSPEGRLYQVEYALESISHAG-TAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKL 59
Query: 162 TPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMR 221
+ + G+ AD+ + AR A ++ + +P++ L R++DI Q YTQ+ +R
Sbjct: 60 NDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLR 119
Query: 222 PLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKKKTNYTGD 281
P G S I YD+ G +Y ++P+G Y +KA+SVG T+ A + L+ +K D
Sbjct: 120 PFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDDMKV--D 177
Query: 282 ETIQLAISCL 291
+ I+LA+ L
Sbjct: 178 DAIELALKTL 187
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
Query: 14 TIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTN-LYSL 72
TIFSPEGRLYQVEYA ++I+ G T++ + D V+A E+KV +L++ T T LY L
Sbjct: 1 TIFSPEGRLYQVEYALESISHAG-TAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKL 59
Query: 73 TPTVGCVMTGMQADSRYQVQRAR 95
+ + G+ AD+ + AR
Sbjct: 60 NDKIAVAVAGLTADAEILINTAR 82
>pdb|1IRU|D Chain D, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|R Chain R, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 248
Score = 133 bits (334), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 110/194 (56%), Gaps = 1/194 (0%)
Query: 98 FDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTN 157
+DR IT+FSP+G L+QVEYA +A+ +G T+V V+G D V+ EKK L D +TV
Sbjct: 3 YDRAITVFSPDGHLFQVEYAQEAVKKGS-TAVGVRGRDIVVLGVEKKSVAKLQDERTVRK 61
Query: 158 LYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQN 217
+ +L V G+ AD+R + RAR E S + + ++ + IA + Q YTQ+
Sbjct: 62 ICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQS 121
Query: 218 AEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKKKTN 277
RP G S +++ +D + P +Y+TDP+G Y ++KA ++G +LEK + +
Sbjct: 122 NGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAI 181
Query: 278 YTGDETIQLAISCL 291
T D TI+L I L
Sbjct: 182 ETDDLTIKLVIKAL 195
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 59/100 (59%), Gaps = 2/100 (2%)
Query: 9 FDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTN 68
+DR IT+FSP+G L+QVEYA +A+ +G T+V V+G D V+ EKK L D +TV
Sbjct: 3 YDRAITVFSPDGHLFQVEYAQEAVKKGS-TAVGVRGRDIVVLGVEKKSVAKLQDERTVRK 61
Query: 69 LYSLTPTVGCVMTGMQADSRYQVQRARAGFDRH-ITIFSP 107
+ +L V G+ AD+R + RAR H +T+ P
Sbjct: 62 ICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDP 101
>pdb|3UNE|C Chain C, Mouse Constitutive 20s Proteasome
pdb|3UNE|Q Chain Q, Mouse Constitutive 20s Proteasome
pdb|3UNE|EE Chain e, Mouse Constitutive 20s Proteasome
pdb|3UNE|SS Chain s, Mouse Constitutive 20s Proteasome
pdb|3UNF|C Chain C, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|Q Chain Q, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|C Chain C, Mouse 20s Immunoproteasome
pdb|3UNH|Q Chain Q, Mouse 20s Immunoproteasome
Length = 248
Score = 132 bits (332), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 109/194 (56%), Gaps = 1/194 (0%)
Query: 98 FDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTN 157
+DR IT+FSP+G L+QVEYA +A+ +G T+V V+G D V+ EKK L D +TV
Sbjct: 3 YDRAITVFSPDGHLFQVEYAQEAVKKGS-TAVGVRGKDIVVLGVEKKSVAKLQDERTVRK 61
Query: 158 LYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQN 217
+ +L V G+ AD+R + RAR E S + + ++ + IA + Q YTQ+
Sbjct: 62 ICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQS 121
Query: 218 AEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKKKTN 277
RP G S +++ +D + P +Y+TDP+G Y ++KA ++G +LEK +
Sbjct: 122 NGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDDAI 181
Query: 278 YTGDETIQLAISCL 291
T D TI+L I L
Sbjct: 182 ETDDLTIKLVIKAL 195
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 59/100 (59%), Gaps = 2/100 (2%)
Query: 9 FDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTN 68
+DR IT+FSP+G L+QVEYA +A+ +G T+V V+G D V+ EKK L D +TV
Sbjct: 3 YDRAITVFSPDGHLFQVEYAQEAVKKGS-TAVGVRGKDIVVLGVEKKSVAKLQDERTVRK 61
Query: 69 LYSLTPTVGCVMTGMQADSRYQVQRARAGFDRH-ITIFSP 107
+ +L V G+ AD+R + RAR H +T+ P
Sbjct: 62 ICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDP 101
>pdb|1VSY|C Chain C, Proteasome Activator Complex
pdb|1VSY|Q Chain Q, Proteasome Activator Complex
pdb|3L5Q|H Chain H, Proteasome Activator Complex
pdb|3L5Q|T Chain T, Proteasome Activator Complex
Length = 232
Score = 131 bits (329), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 108/187 (57%), Gaps = 4/187 (2%)
Query: 106 SPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTN-LYSLTPT 164
SPEGRLYQVEYA ++I+ G T++ + D V+A E+KV +L++ T T LY L
Sbjct: 1 SPEGRLYQVEYALESISHAG-TAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDK 59
Query: 165 VGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLG 224
+ + G+ AD+ + AR A ++ + +P++ L R++DI Q YTQ+ +RP G
Sbjct: 60 IAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFG 119
Query: 225 CSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKKKTNYTGDETI 284
S I YD+ G +Y ++P+G Y +KA+SVG T+ A + L+ +K D+ I
Sbjct: 120 VSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDDMKV--DDAI 177
Query: 285 QLAISCL 291
+LA+ L
Sbjct: 178 ELALKTL 184
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 53/93 (56%), Gaps = 2/93 (2%)
Query: 17 SPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTN-LYSLTPT 75
SPEGRLYQVEYA ++I+ G T++ + D V+A E+KV +L++ T T LY L
Sbjct: 1 SPEGRLYQVEYALESISHAG-TAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDK 59
Query: 76 VGCVMTGMQADSRYQVQRARAGFDRHITIFSPE 108
+ + G+ AD+ + AR ++ ++ +
Sbjct: 60 IAVAVAGLTADAEILINTARIHAQNYLKTYNED 92
>pdb|3UNB|C Chain C, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|Q Chain Q, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|EE Chain e, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|SS Chain s, Mouse Constitutive 20s Proteasome In Complex With Pr-957
Length = 248
Score = 130 bits (326), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 108/194 (55%), Gaps = 1/194 (0%)
Query: 98 FDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTN 157
+DR IT+FSP+G L+QVEYA +A+ +G T+V V+G D V+ KK L D +TV
Sbjct: 3 YDRAITVFSPDGHLFQVEYAQEAVKKGS-TAVGVRGKDIVVLGVAKKSVAKLQDERTVRK 61
Query: 158 LYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQN 217
+ +L V G+ AD+R + RAR E S + + ++ + IA + Q YTQ+
Sbjct: 62 ICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQS 121
Query: 218 AEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKKKTN 277
RP G S +++ +D + P +Y+TDP+G Y ++KA ++G +LEK +
Sbjct: 122 NGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDDAI 181
Query: 278 YTGDETIQLAISCL 291
T D TI+L I L
Sbjct: 182 ETDDLTIKLVIKAL 195
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 58/100 (58%), Gaps = 2/100 (2%)
Query: 9 FDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTN 68
+DR IT+FSP+G L+QVEYA +A+ +G T+V V+G D V+ KK L D +TV
Sbjct: 3 YDRAITVFSPDGHLFQVEYAQEAVKKGS-TAVGVRGKDIVVLGVAKKSVAKLQDERTVRK 61
Query: 69 LYSLTPTVGCVMTGMQADSRYQVQRARAGFDRH-ITIFSP 107
+ +L V G+ AD+R + RAR H +T+ P
Sbjct: 62 ICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDP 101
>pdb|3UNB|A Chain A, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|O Chain O, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|CC Chain c, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|QQ Chain q, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|A Chain A, Mouse Constitutive 20s Proteasome
pdb|3UNE|O Chain O, Mouse Constitutive 20s Proteasome
pdb|3UNE|CC Chain c, Mouse Constitutive 20s Proteasome
pdb|3UNE|QQ Chain q, Mouse Constitutive 20s Proteasome
pdb|3UNF|A Chain A, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|O Chain O, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|A Chain A, Mouse 20s Immunoproteasome
pdb|3UNH|O Chain O, Mouse 20s Immunoproteasome
Length = 234
Score = 127 bits (318), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 111/198 (56%), Gaps = 4/198 (2%)
Query: 94 ARAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPK 153
A+ G+ +T FSP G+L Q+EYA A+ GG SV +K + V+ATEKK L D +
Sbjct: 2 AKRGYSFSLTTFSPSGKLVQIEYALAAV-AGGAPSVGIKAANGVVLATEKKQKSILYDER 60
Query: 154 TVTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQV 213
+V + +T +G V +GM D R V RAR A + + +P QL R+A + Q
Sbjct: 61 SVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQE 120
Query: 214 YTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFK 273
YTQ+ +RP G S+++ ++E P ++++DP+G Y ++KA ++G ++LEK++
Sbjct: 121 YTQSGGVRPFGVSLLICGWNEGR-PYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYN 179
Query: 274 KKTNYTGDETIQLAISCL 291
+ ++ I AI L
Sbjct: 180 EDLEL--EDAIHTAILTL 195
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 8 GFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVT 67
G+ +T FSP G+L Q+EYA A+ GG SV +K + V+ATEKK L D ++V
Sbjct: 5 GYSFSLTTFSPSGKLVQIEYALAAV-AGGAPSVGIKAANGVVLATEKKQKSILYDERSVH 63
Query: 68 NLYSLTPTVGCVMTGMQADSRYQVQRAR 95
+ +T +G V +GM D R V RAR
Sbjct: 64 KVEPITKHIGLVYSGMGPDYRVLVHRAR 91
>pdb|1IRU|B Chain B, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|P Chain P, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 233
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 110/198 (55%), Gaps = 4/198 (2%)
Query: 94 ARAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPK 153
A G+ +T FSP G+L Q+EYA A+ GG SV +K + V+ATEKK L D +
Sbjct: 1 AERGYSFSLTTFSPSGKLVQIEYALAAV-AGGAPSVGIKAANGVVLATEKKQKSILYDER 59
Query: 154 TVTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQV 213
+V + +T +G V +GM D R V RAR A + + +P QL R+A + Q
Sbjct: 60 SVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQE 119
Query: 214 YTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFK 273
YTQ+ +RP G S+++ ++E P ++++DP+G Y ++KA ++G ++LEK++
Sbjct: 120 YTQSGGVRPFGVSLLICGWNEGR-PYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYN 178
Query: 274 KKTNYTGDETIQLAISCL 291
+ ++ I AI L
Sbjct: 179 EDLEL--EDAIHTAILTL 194
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 8 GFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVT 67
G+ +T FSP G+L Q+EYA A+ GG SV +K + V+ATEKK L D ++V
Sbjct: 4 GYSFSLTTFSPSGKLVQIEYALAAV-AGGAPSVGIKAANGVVLATEKKQKSILYDERSVH 62
Query: 68 NLYSLTPTVGCVMTGMQADSRYQVQRAR 95
+ +T +G V +GM D R V RAR
Sbjct: 63 KVEPITKHIGLVYSGMGPDYRVLVHRAR 90
>pdb|1RYP|B Chain B, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|P Chain P, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|A Chain A, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|O Chain O, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G0U|A Chain A, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|O Chain O, A Gated Channel Into The Proteasome Core Particle
pdb|1FNT|B Chain B, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|P Chain P, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1JD2|A Chain A, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|V Chain V, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1Z7Q|B Chain B, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|P Chain P, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2F16|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|A Chain A, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|O Chain O, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|A Chain A, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|O Chain O, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2ZCY|A Chain A, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|O Chain O, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|A Chain A, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|O Chain O, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3D29|A Chain A, Proteasome Inhibition By Fellutamide B
pdb|3D29|O Chain O, Proteasome Inhibition By Fellutamide B
pdb|3E47|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|A Chain A, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|O Chain O, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|A Chain A, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|O Chain O, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|A Chain A, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|O Chain O, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3NZJ|A Chain A, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|O Chain O, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3MG4|A Chain A, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|O Chain O, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|A Chain A, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|O Chain O, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG6|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3OKJ|A Chain A, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|O Chain O, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|A Chain A, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|O Chain O, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|A Chain A, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|O Chain O, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3UN4|A Chain A, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|O Chain O, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|A Chain A, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|O Chain O, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3SDI|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|A Chain A, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|O Chain O, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4B4T|B Chain B, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|B Chain B, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4FZC|A Chain A, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|O Chain O, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|A Chain A, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|O Chain O, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4INR|A Chain A, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|O Chain O, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|A Chain A, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|O Chain O, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|A Chain A, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|O Chain O, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 250
Score = 124 bits (311), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 114/197 (57%), Gaps = 7/197 (3%)
Query: 99 DRH---ITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTV 155
DR+ +T FSP G+L Q++YA A+ QG VTS+ +K + V+ATEKK L +T+
Sbjct: 3 DRYSFSLTTFSPSGKLGQIDYALTAVKQG-VTSLGIKATNGVVIATEKKSSSPLAMSETL 61
Query: 156 TNLYSLTPTVGCVMTGMQADSRYQVQRARYEA-ASFKYKHGYSMPIDQLCNRIADISQVY 214
+ + LTP +G V +GM D R V ++R A S+K +G P L + +A I Q
Sbjct: 62 SKVSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEA 121
Query: 215 TQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKK 274
TQ+ +RP G S+++ +DE G +Y+ DP+G Y +KA ++G + A ++LEK++
Sbjct: 122 TQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWND 181
Query: 275 KTNYTGDETIQLAISCL 291
+ ++ I +A+ L
Sbjct: 182 ELEL--EDAIHIALLTL 196
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 55/89 (61%), Gaps = 4/89 (4%)
Query: 10 DRH---ITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTV 66
DR+ +T FSP G+L Q++YA A+ QG VTS+ +K + V+ATEKK L +T+
Sbjct: 3 DRYSFSLTTFSPSGKLGQIDYALTAVKQG-VTSLGIKATNGVVIATEKKSSSPLAMSETL 61
Query: 67 TNLYSLTPTVGCVMTGMQADSRYQVQRAR 95
+ + LTP +G V +GM D R V ++R
Sbjct: 62 SKVSLLTPDIGAVYSGMGPDYRVLVDKSR 90
>pdb|1J2P|A Chain A, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|B Chain B, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|C Chain C, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|D Chain D, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|E Chain E, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|F Chain F, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|G Chain G, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
Length = 246
Score = 124 bits (310), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 112/195 (57%), Gaps = 5/195 (2%)
Query: 97 GFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVT 156
G+DR IT+FSP+GRL+QVEYA +A+ +G T++ +K + ++ +K+V L++ T+
Sbjct: 7 GYDRAITVFSPDGRLFQVEYAREAVKRGA-TAIGIKCKEGVILIADKRVGSKLLEKDTIE 65
Query: 157 NLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQ 216
+Y + + +G+ AD+R + RAR EA + + + + +L +I D Q YTQ
Sbjct: 66 KIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQ 125
Query: 217 NAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKKKT 276
+RP G S+++ NE P +Y+TDP+G +KA ++G+ + EK+++
Sbjct: 126 YGGVRPFGVSLLIAGV--NEVPKLYETDPSGALLEYKATAIGMGRMAVTEFFEKEYRDDL 183
Query: 277 NYTGDETIQLAISCL 291
++ D+ + L + +
Sbjct: 184 SF--DDAMVLGLVAM 196
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 57/88 (64%), Gaps = 1/88 (1%)
Query: 8 GFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVT 67
G+DR IT+FSP+GRL+QVEYA +A+ +G T++ +K + ++ +K+V L++ T+
Sbjct: 7 GYDRAITVFSPDGRLFQVEYAREAVKRGA-TAIGIKCKEGVILIADKRVGSKLLEKDTIE 65
Query: 68 NLYSLTPTVGCVMTGMQADSRYQVQRAR 95
+Y + + +G+ AD+R + RAR
Sbjct: 66 KIYKIDEHICAATSGLVADARVLIDRAR 93
>pdb|2KU1|A Chain A, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|B Chain B, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|C Chain C, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|D Chain D, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|E Chain E, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|F Chain F, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|G Chain G, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
Length = 237
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 114/201 (56%), Gaps = 4/201 (1%)
Query: 91 VQRARAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLV 150
+Q+ + +DR IT+FSP+GRL+QVEYA +A+ +G T++ +K + ++ ++KKV L+
Sbjct: 5 MQQGQMAYDRAITVFSPDGRLFQVEYAREAVKKGS-TALGMKFANGVLLISDKKVRSRLI 63
Query: 151 DPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADI 210
+ ++ + + V V +G+ AD+R V AR A K +G + I+ L R+AD
Sbjct: 64 EQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQ 123
Query: 211 SQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEK 270
Q YTQ +RP G S+I D+ GP ++ DPAG +KA ++G S+LE+
Sbjct: 124 MQQYTQYGGVRPYGVSLIFAGIDQI-GPRLFDCDPAGTINEYKATAIGSGKDAVVSFLER 182
Query: 271 KFKKKTNYTGDETIQLAISCL 291
++K+ N E + L I L
Sbjct: 183 EYKE--NLPEKEAVTLGIKAL 201
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 60/95 (63%), Gaps = 2/95 (2%)
Query: 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSL 60
M +G A +DR IT+FSP+GRL+QVEYA +A+ +G T++ +K + ++ ++KKV L
Sbjct: 5 MQQGQMA-YDRAITVFSPDGRLFQVEYAREAVKKGS-TALGMKFANGVLLISDKKVRSRL 62
Query: 61 VDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRAR 95
++ ++ + + V V +G+ AD+R V AR
Sbjct: 63 IEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFAR 97
>pdb|1PMA|A Chain A, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|C Chain C, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|D Chain D, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|E Chain E, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|F Chain F, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|G Chain G, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|H Chain H, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|I Chain I, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|J Chain J, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|K Chain K, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|L Chain L, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|M Chain M, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|N Chain N, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|O Chain O, Proteasome From Thermoplasma Acidophilum
pdb|1YA7|A Chain A, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|B Chain B, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|C Chain C, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|D Chain D, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|E Chain E, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|F Chain F, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|G Chain G, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|3C91|A Chain A, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|B Chain B, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|C Chain C, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|D Chain D, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|E Chain E, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|F Chain F, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|G Chain G, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|O Chain O, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|P Chain P, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|Q Chain Q, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|R Chain R, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|S Chain S, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|T Chain T, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|U Chain U, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C92|A Chain A, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|B Chain B, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|C Chain C, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|D Chain D, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|E Chain E, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|F Chain F, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|G Chain G, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|O Chain O, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|P Chain P, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|Q Chain Q, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|R Chain R, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|S Chain S, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|T Chain T, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|U Chain U, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3IPM|A Chain A, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|B Chain B, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|C Chain C, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|D Chain D, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|E Chain E, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|F Chain F, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|G Chain G, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
Length = 233
Score = 123 bits (308), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 114/201 (56%), Gaps = 4/201 (1%)
Query: 91 VQRARAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLV 150
+Q+ + +DR IT+FSP+GRL+QVEYA +A+ +G T++ +K + ++ ++KKV L+
Sbjct: 1 MQQGQMAYDRAITVFSPDGRLFQVEYAREAVKKGS-TALGMKFANGVLLISDKKVRSRLI 59
Query: 151 DPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADI 210
+ ++ + + V V +G+ AD+R V AR A K +G + I+ L R+AD
Sbjct: 60 EQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQ 119
Query: 211 SQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEK 270
Q YTQ +RP G S+I D+ GP ++ DPAG +KA ++G S+LE+
Sbjct: 120 MQQYTQYGGVRPYGVSLIFAGIDQI-GPRLFDCDPAGTINEYKATAIGSGKDAVVSFLER 178
Query: 271 KFKKKTNYTGDETIQLAISCL 291
++K+ N E + L I L
Sbjct: 179 EYKE--NLPEKEAVTLGIKAL 197
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 60/95 (63%), Gaps = 2/95 (2%)
Query: 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSL 60
M +G A +DR IT+FSP+GRL+QVEYA +A+ +G T++ +K + ++ ++KKV L
Sbjct: 1 MQQGQMA-YDRAITVFSPDGRLFQVEYAREAVKKGS-TALGMKFANGVLLISDKKVRSRL 58
Query: 61 VDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRAR 95
++ ++ + + V V +G+ AD+R V AR
Sbjct: 59 IEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFAR 93
>pdb|3JRM|A Chain A, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|B Chain B, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|C Chain C, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|D Chain D, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|E Chain E, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|F Chain F, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|G Chain G, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|A Chain A, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|B Chain B, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|C Chain C, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|D Chain D, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|E Chain E, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|F Chain F, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|G Chain G, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|A Chain A, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|B Chain B, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|C Chain C, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|D Chain D, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|E Chain E, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|F Chain F, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|G Chain G, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
Length = 227
Score = 120 bits (301), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 110/194 (56%), Gaps = 4/194 (2%)
Query: 98 FDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTN 157
+DR IT+FSP+GRL+QVEYA +A+ +G T++ +K + ++ ++KKV L++ ++
Sbjct: 2 YDRAITVFSPDGRLFQVEYAREAVKKGS-TALGMKFANGVLLISDKKVRSRLIEQNSIEK 60
Query: 158 LYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQN 217
+ + V V +G+ AD+R V AR A K +G + I+ L R+AD Q YTQ
Sbjct: 61 IQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQY 120
Query: 218 AEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKKKTN 277
+RP G S+I D+ GP ++ DPAG +KA ++G S+LE+++K+ N
Sbjct: 121 GGVRPYGVSLIFAGIDQI-GPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKE--N 177
Query: 278 YTGDETIQLAISCL 291
E + L I L
Sbjct: 178 LPEKEAVTLGIKAL 191
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 56/87 (64%), Gaps = 1/87 (1%)
Query: 9 FDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTN 68
+DR IT+FSP+GRL+QVEYA +A+ +G T++ +K + ++ ++KKV L++ ++
Sbjct: 2 YDRAITVFSPDGRLFQVEYAREAVKKGS-TALGMKFANGVLLISDKKVRSRLIEQNSIEK 60
Query: 69 LYSLTPTVGCVMTGMQADSRYQVQRAR 95
+ + V V +G+ AD+R V AR
Sbjct: 61 IQLIDDYVAAVTSGLVADARVLVDFAR 87
>pdb|1YAR|A Chain A, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|B Chain B, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|C Chain C, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|D Chain D, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|E Chain E, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|F Chain F, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|G Chain G, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
Length = 233
Score = 120 bits (301), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 113/201 (56%), Gaps = 4/201 (1%)
Query: 91 VQRARAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLV 150
+Q+ + + R IT+FSP+GRL+QVEYA +A+ +G T++ +K + ++ ++KKV L+
Sbjct: 1 MQQGQMAYSRAITVFSPDGRLFQVEYAREAVKKGS-TALGMKFANGVLLISDKKVRSRLI 59
Query: 151 DPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADI 210
+ ++ + + V V +G+ AD+R V AR A K +G + I+ L R+AD
Sbjct: 60 EQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQ 119
Query: 211 SQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEK 270
Q YTQ +RP G S+I D+ GP ++ DPAG +KA ++G S+LE+
Sbjct: 120 MQQYTQYGGVRPYGVSLIFAGIDQI-GPRLFDCDPAGTINEYKATAIGSGKDAVVSFLER 178
Query: 271 KFKKKTNYTGDETIQLAISCL 291
++K+ N E + L I L
Sbjct: 179 EYKE--NLPEKEAVTLGIKAL 197
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 59/95 (62%), Gaps = 2/95 (2%)
Query: 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSL 60
M +G A + R IT+FSP+GRL+QVEYA +A+ +G T++ +K + ++ ++KKV L
Sbjct: 1 MQQGQMA-YSRAITVFSPDGRLFQVEYAREAVKKGS-TALGMKFANGVLLISDKKVRSRL 58
Query: 61 VDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRAR 95
++ ++ + + V V +G+ AD+R V AR
Sbjct: 59 IEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFAR 93
>pdb|1J2Q|A Chain A, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|B Chain B, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|C Chain C, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|D Chain D, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|E Chain E, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|F Chain F, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|G Chain G, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
Length = 237
Score = 118 bits (295), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 103/179 (57%), Gaps = 3/179 (1%)
Query: 100 RHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLY 159
R IT+FSP+GRL+QVEYA +A+ +G T++ +K + ++ +K+V L++ T+ +Y
Sbjct: 1 RAITVFSPDGRLFQVEYAREAVKRGA-TAIGIKCKEGVILIADKRVGSKLLEADTIEKIY 59
Query: 160 SLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNAE 219
+ + +G+ AD+R + RAR EA + + + + +L +I D Q YTQ
Sbjct: 60 KIDEHICAATSGLVADARVLIDRARIEAQINRLTYDEPITVKELAKKICDFKQQYTQYGG 119
Query: 220 MRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKKKTNY 278
+RP G S+++ DE P +Y+TDP+G +KA ++G+ + EK+++ ++
Sbjct: 120 VRPFGVSLLIAGVDEV--PKLYETDPSGALLEYKATAIGMGRNAVTEFFEKEYRDDLSF 176
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 11 RHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLY 70
R IT+FSP+GRL+QVEYA +A+ +G T++ +K + ++ +K+V L++ T+ +Y
Sbjct: 1 RAITVFSPDGRLFQVEYAREAVKRGA-TAIGIKCKEGVILIADKRVGSKLLEADTIEKIY 59
Query: 71 SLTPTVGCVMTGMQADSRYQVQRAR 95
+ + +G+ AD+R + RAR
Sbjct: 60 KIDEHICAATSGLVADARVLIDRAR 84
>pdb|2KU2|A Chain A, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|B Chain B, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|C Chain C, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|D Chain D, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|E Chain E, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|F Chain F, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|G Chain G, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
Length = 237
Score = 118 bits (295), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 112/201 (55%), Gaps = 4/201 (1%)
Query: 91 VQRARAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLV 150
+Q+ + R IT+FSP+GRL+QVEYA +A+ +G T++ +K + ++ ++KKV L+
Sbjct: 5 MQQGQMAGGRAITVFSPDGRLFQVEYAREAVKKGS-TALGMKFANGVLLISDKKVRSRLI 63
Query: 151 DPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADI 210
+ ++ + + V V +G+ AD+R V AR A K +G + I+ L R+AD
Sbjct: 64 EQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQ 123
Query: 211 SQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEK 270
Q YTQ +RP G S+I D+ GP ++ DPAG +KA ++G S+LE+
Sbjct: 124 MQQYTQYGGVRPYGVSLIFAGIDQI-GPRLFDCDPAGTINEYKATAIGSGKDAVVSFLER 182
Query: 271 KFKKKTNYTGDETIQLAISCL 291
++K+ N E + L I L
Sbjct: 183 EYKE--NLPEKEAVTLGIKAL 201
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 59/95 (62%), Gaps = 2/95 (2%)
Query: 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSL 60
M +G AG R IT+FSP+GRL+QVEYA +A+ +G T++ +K + ++ ++KKV L
Sbjct: 5 MQQGQMAG-GRAITVFSPDGRLFQVEYAREAVKKGS-TALGMKFANGVLLISDKKVRSRL 62
Query: 61 VDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRAR 95
++ ++ + + V V +G+ AD+R V AR
Sbjct: 63 IEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFAR 97
>pdb|1YAU|A Chain A, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|B Chain B, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|C Chain C, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|D Chain D, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|E Chain E, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|F Chain F, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|G Chain G, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
Length = 233
Score = 117 bits (294), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 112/201 (55%), Gaps = 4/201 (1%)
Query: 91 VQRARAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLV 150
+Q+ + R IT+FSP+GRL+QVEYA +A+ +G T++ +K + ++ ++KKV L+
Sbjct: 1 MQQGQMAGGRAITVFSPDGRLFQVEYAREAVKKGS-TALGMKFANGVLLISDKKVRSRLI 59
Query: 151 DPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADI 210
+ ++ + + V V +G+ AD+R V AR A K +G + I+ L R+AD
Sbjct: 60 EQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQ 119
Query: 211 SQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEK 270
Q YTQ +RP G S+I D+ GP ++ DPAG +KA ++G S+LE+
Sbjct: 120 MQQYTQYGGVRPYGVSLIFAGIDQI-GPRLFDCDPAGTINEYKATAIGSGKDAVVSFLER 178
Query: 271 KFKKKTNYTGDETIQLAISCL 291
++K+ N E + L I L
Sbjct: 179 EYKE--NLPEKEAVTLGIKAL 197
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 59/95 (62%), Gaps = 2/95 (2%)
Query: 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSL 60
M +G AG R IT+FSP+GRL+QVEYA +A+ +G T++ +K + ++ ++KKV L
Sbjct: 1 MQQGQMAG-GRAITVFSPDGRLFQVEYAREAVKKGS-TALGMKFANGVLLISDKKVRSRL 58
Query: 61 VDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRAR 95
++ ++ + + V V +G+ AD+R V AR
Sbjct: 59 IEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFAR 93
>pdb|1G0U|C Chain C, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|Q Chain Q, A Gated Channel Into The Proteasome Core Particle
pdb|3MG6|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
Length = 243
Score = 117 bits (293), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 118/202 (58%), Gaps = 10/202 (4%)
Query: 96 AGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEK----KVPDSLVD 151
+G+DR ++IFSP+G ++QVEYA +A+ +G +V VKG + V+ E+ K+ D+ +
Sbjct: 2 SGYDRALSIFSPDGHIFQVEYALEAVKRG-TCAVGVKGKNCVVLGCERRSTLKLQDTRIT 60
Query: 152 PKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADIS 211
P V+ + S V +G+ ADSR +++AR EA S + + ++ L +A +
Sbjct: 61 PSKVSKIDS---HVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQ 117
Query: 212 QVYTQNAEMRPLGCSMILISYD-ENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEK 270
Q YTQ+ +RP G S ++ +D ++ P +Y+T+P+G Y S+ A ++G + +LEK
Sbjct: 118 QRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEK 177
Query: 271 KF-KKKTNYTGDETIQLAISCL 291
+ +K+ T +E ++L + L
Sbjct: 178 NYDRKEPPATVEECVKLTVRSL 199
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 63/106 (59%), Gaps = 9/106 (8%)
Query: 7 AGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEK----KVPDSLVD 62
+G+DR ++IFSP+G ++QVEYA +A+ + G +V VKG + V+ E+ K+ D+ +
Sbjct: 2 SGYDRALSIFSPDGHIFQVEYALEAVKR-GTCAVGVKGKNCVVLGCERRSTLKLQDTRIT 60
Query: 63 PKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARAGFDRH-ITIFSP 107
P V+ + S V +G+ ADSR +++AR H +T+ P
Sbjct: 61 PSKVSKIDS---HVVLSFSGLNADSRILIEKARVEAQSHRLTLEDP 103
>pdb|1FNT|D Chain D, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|R Chain R, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|D Chain D, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|R Chain R, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|C Chain C, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|Q Chain Q, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|C Chain C, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|Q Chain Q, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3NZJ|C Chain C, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|Q Chain Q, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3UN4|C Chain C, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|Q Chain Q, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|C Chain C, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|Q Chain Q, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4B4T|D Chain D, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|D Chain D, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4INR|C Chain C, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|Q Chain Q, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|C Chain C, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|Q Chain Q, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|C Chain C, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|Q Chain Q, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 254
Score = 117 bits (293), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 118/202 (58%), Gaps = 10/202 (4%)
Query: 96 AGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEK----KVPDSLVD 151
+G+DR ++IFSP+G ++QVEYA +A+ +G +V VKG + V+ E+ K+ D+ +
Sbjct: 2 SGYDRALSIFSPDGHIFQVEYALEAVKRG-TCAVGVKGKNCVVLGCERRSTLKLQDTRIT 60
Query: 152 PKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADIS 211
P V+ + S V +G+ ADSR +++AR EA S + + ++ L +A +
Sbjct: 61 PSKVSKIDS---HVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQ 117
Query: 212 QVYTQNAEMRPLGCSMILISYD-ENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEK 270
Q YTQ+ +RP G S ++ +D ++ P +Y+T+P+G Y S+ A ++G + +LEK
Sbjct: 118 QRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEK 177
Query: 271 KF-KKKTNYTGDETIQLAISCL 291
+ +K+ T +E ++L + L
Sbjct: 178 NYDRKEPPATVEECVKLTVRSL 199
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 63/106 (59%), Gaps = 9/106 (8%)
Query: 7 AGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEK----KVPDSLVD 62
+G+DR ++IFSP+G ++QVEYA +A+ + G +V VKG + V+ E+ K+ D+ +
Sbjct: 2 SGYDRALSIFSPDGHIFQVEYALEAVKR-GTCAVGVKGKNCVVLGCERRSTLKLQDTRIT 60
Query: 63 PKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARAGFDRH-ITIFSP 107
P V+ + S V +G+ ADSR +++AR H +T+ P
Sbjct: 61 PSKVSKIDS---HVVLSFSGLNADSRILIEKARVEAQSHRLTLEDP 103
>pdb|1RYP|D Chain D, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|R Chain R, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|C Chain C, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|Q Chain Q, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|C Chain C, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|X Chain X, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|C Chain C, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|Q Chain Q, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|C Chain C, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|Q Chain Q, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|C Chain C, Proteasome Inhibition By Fellutamide B
pdb|3D29|Q Chain Q, Proteasome Inhibition By Fellutamide B
pdb|3E47|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|C Chain C, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|Q Chain Q, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|C Chain C, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|Q Chain Q, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|C Chain C, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|Q Chain Q, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3MG4|C Chain C, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|Q Chain Q, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|C Chain C, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|Q Chain Q, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|C Chain C, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|Q Chain Q, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|C Chain C, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|Q Chain Q, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|C Chain C, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|Q Chain Q, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SDI|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|C Chain C, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|Q Chain Q, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|C Chain C, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|Q Chain Q, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|C Chain C, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|Q Chain Q, 20s Yeast Proteasome In Complex With Glidobactin
Length = 241
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 117/201 (58%), Gaps = 10/201 (4%)
Query: 97 GFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEK----KVPDSLVDP 152
G+DR ++IFSP+G ++QVEYA +A+ +G +V VKG + V+ E+ K+ D+ + P
Sbjct: 1 GYDRALSIFSPDGHIFQVEYALEAVKRG-TCAVGVKGKNCVVLGCERRSTLKLQDTRITP 59
Query: 153 KTVTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQ 212
V+ + S V +G+ ADSR +++AR EA S + + ++ L +A + Q
Sbjct: 60 SKVSKIDS---HVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQ 116
Query: 213 VYTQNAEMRPLGCSMILISYD-ENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKK 271
YTQ+ +RP G S ++ +D ++ P +Y+T+P+G Y S+ A ++G + +LEK
Sbjct: 117 RYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKN 176
Query: 272 F-KKKTNYTGDETIQLAISCL 291
+ +K+ T +E ++L + L
Sbjct: 177 YDRKEPPATVEECVKLTVRSL 197
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 62/105 (59%), Gaps = 9/105 (8%)
Query: 8 GFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEK----KVPDSLVDP 63
G+DR ++IFSP+G ++QVEYA +A+ + G +V VKG + V+ E+ K+ D+ + P
Sbjct: 1 GYDRALSIFSPDGHIFQVEYALEAVKR-GTCAVGVKGKNCVVLGCERRSTLKLQDTRITP 59
Query: 64 KTVTNLYSLTPTVGCVMTGMQADSRYQVQRARAGFDRH-ITIFSP 107
V+ + S V +G+ ADSR +++AR H +T+ P
Sbjct: 60 SKVSKIDS---HVVLSFSGLNADSRILIEKARVEAQSHRLTLEDP 101
>pdb|3UNB|F Chain F, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|T Chain T, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|HH Chain h, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|VV Chain v, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|F Chain F, Mouse Constitutive 20s Proteasome
pdb|3UNE|T Chain T, Mouse Constitutive 20s Proteasome
pdb|3UNE|HH Chain h, Mouse Constitutive 20s Proteasome
pdb|3UNE|VV Chain v, Mouse Constitutive 20s Proteasome
pdb|3UNF|F Chain F, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|T Chain T, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|F Chain F, Mouse 20s Immunoproteasome
pdb|3UNH|T Chain T, Mouse 20s Immunoproteasome
Length = 255
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 97/174 (55%), Gaps = 1/174 (0%)
Query: 97 GFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVT 156
G+D + FSP+GR++QVEYA KA+ + T++ ++ D V EK V L + +
Sbjct: 7 GYDLSASTFSPDGRVFQVEYAMKAV-ENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNK 65
Query: 157 NLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQ 216
L+++ VG + G+ AD+R AR EA++F+ GY++P+ L +R+A YT
Sbjct: 66 RLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTL 125
Query: 217 NAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEK 270
+ +RP GCS +L SY N+G +Y DP+G + ++G A + +EK
Sbjct: 126 YSAVRPFGCSFMLGSYSANDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEK 179
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 8 GFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVT 67
G+D + FSP+GR++QVEYA KA+ + T++ ++ D V EK V L + +
Sbjct: 7 GYDLSASTFSPDGRVFQVEYAMKAV-ENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNK 65
Query: 68 NLYSLTPTVGCVMTGMQADSRYQVQRAR 95
L+++ VG + G+ AD+R AR
Sbjct: 66 RLFNVDRHVGMAVAGLLADARSLADIAR 93
>pdb|3UNB|B Chain B, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|P Chain P, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|DD Chain d, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|RR Chain r, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|B Chain B, Mouse Constitutive 20s Proteasome
pdb|3UNE|P Chain P, Mouse Constitutive 20s Proteasome
pdb|3UNE|DD Chain d, Mouse Constitutive 20s Proteasome
pdb|3UNE|RR Chain r, Mouse Constitutive 20s Proteasome
pdb|3UNF|B Chain B, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|P Chain P, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|B Chain B, Mouse 20s Immunoproteasome
pdb|3UNH|P Chain P, Mouse 20s Immunoproteasome
Length = 261
Score = 115 bits (288), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 106/193 (54%), Gaps = 7/193 (3%)
Query: 98 FDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTN 157
+D TIFSPEGRLYQVEYA +AI G T + + D ++A E++ L+D +
Sbjct: 5 YDSRTTIFSPEGRLYQVEYAMEAIGHAG-TCLGILANDGVLLAAERRNIHKLLDEVFFSE 63
Query: 158 -LYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQ 216
+Y L + C + G+ +D+ R A + ++ +P +QL + DI Q YTQ
Sbjct: 64 KIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQ 123
Query: 217 NAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKKKT 276
RP G S++ I +D++ G +Y++DP+G Y +KA +G + A S L++ +K+
Sbjct: 124 FGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKE-- 181
Query: 277 NYTGDETIQLAIS 289
G+ T++ A++
Sbjct: 182 ---GEMTLKSALA 191
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 9 FDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTN 68
+D TIFSPEGRLYQVEYA +AI G T + + D ++A E++ L+D +
Sbjct: 5 YDSRTTIFSPEGRLYQVEYAMEAIGHAG-TCLGILANDGVLLAAERRNIHKLLDEVFFSE 63
Query: 69 -LYSLTPTVGCVMTGMQADSRYQVQRARAGFDRHI 102
+Y L + C + G+ +D+ R R++
Sbjct: 64 KIYKLNEDMACSVAGITSDANVLTNELRLIAQRYL 98
>pdb|1IRU|C Chain C, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|Q Chain Q, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 261
Score = 115 bits (288), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 106/193 (54%), Gaps = 7/193 (3%)
Query: 98 FDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTN 157
+D TIFSPEGRLYQVEYA +AI G T + + D ++A E++ L+D +
Sbjct: 5 YDSRTTIFSPEGRLYQVEYAMEAIGHAG-TCLGILANDGVLLAAERRNIHKLLDEVFFSE 63
Query: 158 -LYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQ 216
+Y L + C + G+ +D+ R A + ++ +P +QL + DI Q YTQ
Sbjct: 64 KIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQ 123
Query: 217 NAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKKKT 276
RP G S++ I +D++ G +Y++DP+G Y +KA +G + A S L++ +K+
Sbjct: 124 FGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKE-- 181
Query: 277 NYTGDETIQLAIS 289
G+ T++ A++
Sbjct: 182 ---GEMTLKSALA 191
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 9 FDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTN 68
+D TIFSPEGRLYQVEYA +AI G T + + D ++A E++ L+D +
Sbjct: 5 YDSRTTIFSPEGRLYQVEYAMEAIGHAG-TCLGILANDGVLLAAERRNIHKLLDEVFFSE 63
Query: 69 -LYSLTPTVGCVMTGMQADSRYQVQRARAGFDRHI 102
+Y L + C + G+ +D+ R R++
Sbjct: 64 KIYKLNEDMACSVAGITSDANVLTNELRLIAQRYL 98
>pdb|1IRU|G Chain G, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|U Chain U, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 254
Score = 115 bits (287), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 97/174 (55%), Gaps = 1/174 (0%)
Query: 97 GFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVT 156
G+D + FSP+GR++QVEYA KA+ + T++ ++ D V EK V L + +
Sbjct: 6 GYDLSASTFSPDGRVFQVEYAMKAV-ENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNK 64
Query: 157 NLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQ 216
L+++ VG + G+ AD+R AR EA++F+ GY++P+ L +R+A YT
Sbjct: 65 RLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTL 124
Query: 217 NAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEK 270
+ +RP GCS +L SY N+G +Y DP+G + ++G A + +EK
Sbjct: 125 YSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEK 178
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 8 GFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVT 67
G+D + FSP+GR++QVEYA KA+ + T++ ++ D V EK V L + +
Sbjct: 6 GYDLSASTFSPDGRVFQVEYAMKAV-ENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNK 64
Query: 68 NLYSLTPTVGCVMTGMQADSRYQVQRAR 95
L+++ VG + G+ AD+R AR
Sbjct: 65 RLFNVDRHVGMAVAGLLADARSLADIAR 92
>pdb|1FNT|G Chain G, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|U Chain U, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|F Chain F, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|T Chain T, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|F Chain F, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|T Chain T, Yeast 20s Proteasome:glidobactin A-Complex
Length = 287
Score = 114 bits (286), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 94/174 (54%), Gaps = 2/174 (1%)
Query: 97 GFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVT 156
G+D ++FSP+GR +QVEYA KA+ + G TS+ +K D V A EK + L+ P+
Sbjct: 6 GYDLSNSVFSPDGRNFQVEYAVKAV-ENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNV 64
Query: 157 NLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQ 216
+ + +GCV +G+ D R+ V R R EAASFK + +PI +R+ Q +T
Sbjct: 65 KIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTL 124
Query: 217 NAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEK 270
+RP G S I D+N G +Y +P+G Y +K + G A + LEK
Sbjct: 125 YNSVRPFGVSTIFGGVDKN-GAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEK 177
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 8 GFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVT 67
G+D ++FSP+GR +QVEYA KA+ + G TS+ +K D V A EK + L+ P+
Sbjct: 6 GYDLSNSVFSPDGRNFQVEYAVKAV-ENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNV 64
Query: 68 NLYSLTPTVGCVMTGMQADSRYQVQRAR 95
+ + +GCV +G+ D R+ V R R
Sbjct: 65 KIQVVDRHIGCVYSGLIPDGRHLVNRGR 92
>pdb|1Z7Q|G Chain G, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|U Chain U, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|3NZJ|F Chain F, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|T Chain T, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3UN4|F Chain F, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|T Chain T, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|F Chain F, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|T Chain T, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4B4T|G Chain G, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|G Chain G, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4INR|F Chain F, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|T Chain T, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|F Chain F, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|T Chain T, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|F Chain F, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|T Chain T, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 288
Score = 114 bits (286), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 94/174 (54%), Gaps = 2/174 (1%)
Query: 97 GFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVT 156
G+D ++FSP+GR +QVEYA KA+ + G TS+ +K D V A EK + L+ P+
Sbjct: 7 GYDLSNSVFSPDGRNFQVEYAVKAV-ENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNV 65
Query: 157 NLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQ 216
+ + +GCV +G+ D R+ V R R EAASFK + +PI +R+ Q +T
Sbjct: 66 KIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTL 125
Query: 217 NAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEK 270
+RP G S I D+N G +Y +P+G Y +K + G A + LEK
Sbjct: 126 YNSVRPFGVSTIFGGVDKN-GAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEK 178
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 8 GFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVT 67
G+D ++FSP+GR +QVEYA KA+ + G TS+ +K D V A EK + L+ P+
Sbjct: 7 GYDLSNSVFSPDGRNFQVEYAVKAV-ENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNV 65
Query: 68 NLYSLTPTVGCVMTGMQADSRYQVQRAR 95
+ + +GCV +G+ D R+ V R R
Sbjct: 66 KIQVVDRHIGCVYSGLIPDGRHLVNRGR 93
>pdb|1RYP|G Chain G, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|U Chain U, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|F Chain F, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|T Chain T, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|F Chain F, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|1 Chain 1, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|F Chain F, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|T Chain T, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|F Chain F, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|T Chain T, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|F Chain F, Proteasome Inhibition By Fellutamide B
pdb|3D29|T Chain T, Proteasome Inhibition By Fellutamide B
pdb|3E47|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|F Chain F, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|T Chain T, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|F Chain F, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|T Chain T, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|F Chain F, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|T Chain T, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|1VSY|G Chain G, Proteasome Activator Complex
pdb|1VSY|U Chain U, Proteasome Activator Complex
pdb|3L5Q|L Chain L, Proteasome Activator Complex
pdb|3L5Q|X Chain X, Proteasome Activator Complex
pdb|3MG4|F Chain F, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|T Chain T, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|F Chain F, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|T Chain T, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|F Chain F, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|T Chain T, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3TDD|F Chain F, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|T Chain T, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|F Chain F, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|T Chain T, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|4GK7|F Chain F, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|T Chain T, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|F Chain F, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|T Chain T, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|F Chain F, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|T Chain T, 20s Yeast Proteasome In Complex With Glidobactin
Length = 244
Score = 114 bits (286), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 94/174 (54%), Gaps = 2/174 (1%)
Query: 97 GFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVT 156
G+D ++FSP+GR +QVEYA KA+ + G TS+ +K D V A EK + L+ P+
Sbjct: 3 GYDLSNSVFSPDGRNFQVEYAVKAV-ENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNV 61
Query: 157 NLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQ 216
+ + +GCV +G+ D R+ V R R EAASFK + +PI +R+ Q +T
Sbjct: 62 KIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTL 121
Query: 217 NAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEK 270
+RP G S I D+N G +Y +P+G Y +K + G A + LEK
Sbjct: 122 YNSVRPFGVSTIFGGVDKN-GAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEK 174
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 8 GFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVT 67
G+D ++FSP+GR +QVEYA KA+ + G TS+ +K D V A EK + L+ P+
Sbjct: 3 GYDLSNSVFSPDGRNFQVEYAVKAV-ENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNV 61
Query: 68 NLYSLTPTVGCVMTGMQADSRYQVQRAR 95
+ + +GCV +G+ D R+ V R R
Sbjct: 62 KIQVVDRHIGCVYSGLIPDGRHLVNRGR 89
>pdb|1G0U|F Chain F, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|T Chain T, A Gated Channel Into The Proteasome Core Particle
pdb|3MG6|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
Length = 248
Score = 114 bits (286), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 94/174 (54%), Gaps = 2/174 (1%)
Query: 97 GFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVT 156
G+D ++FSP+GR +QVEYA KA+ + G TS+ +K D V A EK + L+ P+
Sbjct: 7 GYDLSNSVFSPDGRNFQVEYAVKAV-ENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNV 65
Query: 157 NLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQ 216
+ + +GCV +G+ D R+ V R R EAASFK + +PI +R+ Q +T
Sbjct: 66 KIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTL 125
Query: 217 NAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEK 270
+RP G S I D+N G +Y +P+G Y +K + G A + LEK
Sbjct: 126 YNSVRPFGVSTIFGGVDKN-GAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEK 178
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 8 GFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVT 67
G+D ++FSP+GR +QVEYA KA+ + G TS+ +K D V A EK + L+ P+
Sbjct: 7 GYDLSNSVFSPDGRNFQVEYAVKAV-ENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNV 65
Query: 68 NLYSLTPTVGCVMTGMQADSRYQVQRAR 95
+ + +GCV +G+ D R+ V R R
Sbjct: 66 KIQVVDRHIGCVYSGLIPDGRHLVNRGR 93
>pdb|3OEU|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3SDI|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
Length = 242
Score = 114 bits (285), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 94/174 (54%), Gaps = 2/174 (1%)
Query: 97 GFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVT 156
G+D ++FSP+GR +QVEYA KA+ + G TS+ +K D V A EK + L+ P+
Sbjct: 1 GYDLSNSVFSPDGRNFQVEYAVKAV-ENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNV 59
Query: 157 NLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQ 216
+ + +GCV +G+ D R+ V R R EAASFK + +PI +R+ Q +T
Sbjct: 60 KIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTL 119
Query: 217 NAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEK 270
+RP G S I D+N G +Y +P+G Y +K + G A + LEK
Sbjct: 120 YNSVRPFGVSTIFGGVDKN-GAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEK 172
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 8 GFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVT 67
G+D ++FSP+GR +QVEYA KA+ + G TS+ +K D V A EK + L+ P+
Sbjct: 1 GYDLSNSVFSPDGRNFQVEYAVKAV-ENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNV 59
Query: 68 NLYSLTPTVGCVMTGMQADSRYQVQRAR 95
+ + +GCV +G+ D R+ V R R
Sbjct: 60 KIQVVDRHIGCVYSGLIPDGRHLVNRGR 87
>pdb|1VSY|B Chain B, Proteasome Activator Complex
pdb|1VSY|P Chain P, Proteasome Activator Complex
pdb|3L5Q|G Chain G, Proteasome Activator Complex
pdb|3L5Q|S Chain S, Proteasome Activator Complex
Length = 231
Score = 111 bits (277), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 103/180 (57%), Gaps = 4/180 (2%)
Query: 113 QVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVMTGM 172
Q++YA A+ QG VTS+ +K + V+ATEKK L +T++ + LTP +G V +GM
Sbjct: 1 QIDYALTAVKQG-VTSLGIKATNGVVIATEKKSSSPLAMSETLSKVSLLTPDIGAVYSGM 59
Query: 173 QADSRYQVQRARYEA-ASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILIS 231
D R V ++R A S+K +G P L + +A I Q TQ+ +RP G S+++
Sbjct: 60 GPDYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAG 119
Query: 232 YDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKKKTNYTGDETIQLAISCL 291
+DE G +Y+ DP+G Y +KA ++G + A ++LEK++ + ++ I +A+ L
Sbjct: 120 HDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWNDELEL--EDAIHIALLTL 177
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 24 QVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVMTGM 83
Q++YA A+ QG VTS+ +K + V+ATEKK L +T++ + LTP +G V +GM
Sbjct: 1 QIDYALTAVKQG-VTSLGIKATNGVVIATEKKSSSPLAMSETLSKVSLLTPDIGAVYSGM 59
Query: 84 QADSRYQVQRAR 95
D R V ++R
Sbjct: 60 GPDYRVLVDKSR 71
>pdb|3UNB|D Chain D, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|R Chain R, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|FF Chain f, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|TT Chain t, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|D Chain D, Mouse Constitutive 20s Proteasome
pdb|3UNE|R Chain R, Mouse Constitutive 20s Proteasome
pdb|3UNE|FF Chain f, Mouse Constitutive 20s Proteasome
pdb|3UNE|TT Chain t, Mouse Constitutive 20s Proteasome
pdb|3UNF|D Chain D, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|R Chain R, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|D Chain D, Mouse 20s Immunoproteasome
pdb|3UNH|R Chain R, Mouse 20s Immunoproteasome
Length = 241
Score = 107 bits (268), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 105/185 (56%), Gaps = 7/185 (3%)
Query: 95 RAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKT 154
R+ +DR + FSPEGRL+QVEYA +AI G T++ ++ + +A EK++ L++P +
Sbjct: 5 RSEYDRGVNTFSPEGRLFQVEYAIEAIKLGS-TAIGIQTSEGVCLAVEKRITSPLMEPSS 63
Query: 155 VTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVY 214
+ + + +GC M+G+ AD++ + +AR E + + + +M ++ + +++++ +
Sbjct: 64 IEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQF 123
Query: 215 TQN-----AEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLE 269
+ A RP G +++ DE +GP ++ DP+G + A ++G + A S L+
Sbjct: 124 GEEDADPGAMSRPFGVALLFGGVDE-KGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQ 182
Query: 270 KKFKK 274
+ + K
Sbjct: 183 EVYHK 187
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 57/93 (61%), Gaps = 1/93 (1%)
Query: 9 FDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTN 68
+DR + FSPEGRL+QVEYA +AI G T++ ++ + +A EK++ L++P ++
Sbjct: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGS-TAIGIQTSEGVCLAVEKRITSPLMEPSSIEK 66
Query: 69 LYSLTPTVGCVMTGMQADSRYQVQRARAGFDRH 101
+ + +GC M+G+ AD++ + +AR H
Sbjct: 67 IVEIDAHIGCAMSGLIADAKTLIDKARVETQNH 99
>pdb|1IRU|E Chain E, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|S Chain S, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 241
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 104/185 (56%), Gaps = 7/185 (3%)
Query: 95 RAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKT 154
R+ +DR + FSPEGRL+QVEY +AI G T++ ++ + +A EK++ L++P +
Sbjct: 5 RSEYDRGVNTFSPEGRLFQVEYDIEAIKLGS-TAIGIQTSEGVCLAVEKRITSPLMEPSS 63
Query: 155 VTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVY 214
+ + + +GC M+G+ AD++ + +AR E + + + +M ++ + +++++ +
Sbjct: 64 IEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQF 123
Query: 215 TQN-----AEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLE 269
+ A RP G +++ DE +GP ++ DP+G + A ++G + A S L+
Sbjct: 124 GEEDADPGAMSRPFGVALLFGGVDE-KGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQ 182
Query: 270 KKFKK 274
+ + K
Sbjct: 183 ELYHK 187
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Query: 9 FDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTN 68
+DR + FSPEGRL+QVEY +AI G T++ ++ + +A EK++ L++P ++
Sbjct: 8 YDRGVNTFSPEGRLFQVEYDIEAIKLGS-TAIGIQTSEGVCLAVEKRITSPLMEPSSIEK 66
Query: 69 LYSLTPTVGCVMTGMQADSRYQVQRARAGFDRH 101
+ + +GC M+G+ AD++ + +AR H
Sbjct: 67 IVEIDAHIGCAMSGLIADAKTLIDKARVETQNH 99
>pdb|1G0U|D Chain D, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|R Chain R, A Gated Channel Into The Proteasome Core Particle
Length = 241
Score = 100 bits (249), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 102/194 (52%), Gaps = 4/194 (2%)
Query: 95 RAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKT 154
R+ +DR ++ FSPEGRL+QVEY+ +AI G T++ + + V+ EK+ L++ +
Sbjct: 5 RSEYDRGVSTFSPEGRLFQVEYSLEAIKLGS-TAIGIATKEGVVLGVEKRATSPLLESDS 63
Query: 155 VTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVY 214
+ + + +GC M+G+ AD+R ++ AR A + + + ++ L + D++
Sbjct: 64 IEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLAAAA 123
Query: 215 TQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKK 274
+ RP G ++++ +D ++G ++ +P+G + + A ++G + A + L ++
Sbjct: 124 AMS---RPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHS 180
Query: 275 KTNYTGDETIQLAI 288
E + L I
Sbjct: 181 SLTLKEAELLVLKI 194
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 54/87 (62%), Gaps = 1/87 (1%)
Query: 9 FDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTN 68
+DR ++ FSPEGRL+QVEY+ +AI G T++ + + V+ EK+ L++ ++
Sbjct: 8 YDRGVSTFSPEGRLFQVEYSLEAIKLGS-TAIGIATKEGVVLGVEKRATSPLLESDSIEK 66
Query: 69 LYSLTPTVGCVMTGMQADSRYQVQRAR 95
+ + +GC M+G+ AD+R ++ AR
Sbjct: 67 IVEIDRHIGCAMSGLTADARSMIEHAR 93
>pdb|2Z5C|C Chain C, Crystal Structure Of A Novel Chaperone Complex For Yeast
20s Proteasome Assembly
pdb|2Z5C|F Chain F, Crystal Structure Of A Novel Chaperone Complex For Yeast
20s Proteasome Assembly
Length = 262
Score = 100 bits (249), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 104/200 (52%), Gaps = 7/200 (3%)
Query: 95 RAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKT 154
R+ +DR ++ FSPEGRL+QVEY+ +AI G T++ + + V+ EK+ L++ +
Sbjct: 7 RSEYDRGVSTFSPEGRLFQVEYSLEAIKLGS-TAIGIATKEGVVLGVEKRATSPLLESDS 65
Query: 155 VTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVY 214
+ + + +GC M+G+ AD+R ++ AR A + + + ++ L + D++ +
Sbjct: 66 IEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRF 125
Query: 215 TQNAE------MRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYL 268
+ A RP G ++++ +D ++G ++ +P+G + + A ++G + A + L
Sbjct: 126 GEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAEL 185
Query: 269 EKKFKKKTNYTGDETIQLAI 288
++ E + L I
Sbjct: 186 LNEWHSSLTLKEAELLVLKI 205
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 54/87 (62%), Gaps = 1/87 (1%)
Query: 9 FDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTN 68
+DR ++ FSPEGRL+QVEY+ +AI G T++ + + V+ EK+ L++ ++
Sbjct: 10 YDRGVSTFSPEGRLFQVEYSLEAIKLGS-TAIGIATKEGVVLGVEKRATSPLLESDSIEK 68
Query: 69 LYSLTPTVGCVMTGMQADSRYQVQRAR 95
+ + +GC M+G+ AD+R ++ AR
Sbjct: 69 IVEIDRHIGCAMSGLTADARSMIEHAR 95
>pdb|1VSY|E Chain E, Proteasome Activator Complex
pdb|1VSY|S Chain S, Proteasome Activator Complex
pdb|3L5Q|J Chain J, Proteasome Activator Complex
pdb|3L5Q|V Chain V, Proteasome Activator Complex
pdb|3MG6|D Chain D, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|R Chain R, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|D Chain D, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|R Chain R, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|D Chain D, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|R Chain R, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
Length = 250
Score = 100 bits (249), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 104/200 (52%), Gaps = 7/200 (3%)
Query: 95 RAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKT 154
R+ +DR ++ FSPEGRL+QVEY+ +AI G T++ + + V+ EK+ L++ +
Sbjct: 5 RSEYDRGVSTFSPEGRLFQVEYSLEAIKLGS-TAIGIATKEGVVLGVEKRATSPLLESDS 63
Query: 155 VTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVY 214
+ + + +GC M+G+ AD+R ++ AR A + + + ++ L + D++ +
Sbjct: 64 IEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRF 123
Query: 215 TQNAE------MRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYL 268
+ A RP G ++++ +D ++G ++ +P+G + + A ++G + A + L
Sbjct: 124 GEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAEL 183
Query: 269 EKKFKKKTNYTGDETIQLAI 288
++ E + L I
Sbjct: 184 LNEWHSSLTLKEAELLVLKI 203
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 54/87 (62%), Gaps = 1/87 (1%)
Query: 9 FDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTN 68
+DR ++ FSPEGRL+QVEY+ +AI G T++ + + V+ EK+ L++ ++
Sbjct: 8 YDRGVSTFSPEGRLFQVEYSLEAIKLGS-TAIGIATKEGVVLGVEKRATSPLLESDSIEK 66
Query: 69 LYSLTPTVGCVMTGMQADSRYQVQRAR 95
+ + +GC M+G+ AD+R ++ AR
Sbjct: 67 IVEIDRHIGCAMSGLTADARSMIEHAR 93
>pdb|4G4S|E Chain E, Structure Of Proteasome-Pba1-Pba2 Complex
Length = 261
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 104/200 (52%), Gaps = 7/200 (3%)
Query: 95 RAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKT 154
R+ +DR ++ FSPEGRL+QVEY+ +AI G T++ + + V+ EK+ L++ +
Sbjct: 6 RSEYDRGVSTFSPEGRLFQVEYSLEAIKLGS-TAIGIATKEGVVLGVEKRATSPLLESDS 64
Query: 155 VTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVY 214
+ + + +GC M+G+ AD+R ++ AR A + + + ++ L + D++ +
Sbjct: 65 IEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRF 124
Query: 215 TQNAE------MRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYL 268
+ A RP G ++++ +D ++G ++ +P+G + + A ++G + A + L
Sbjct: 125 GEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAEL 184
Query: 269 EKKFKKKTNYTGDETIQLAI 288
++ E + L I
Sbjct: 185 LNEWHSSLTLKEAELLVLKI 204
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 54/87 (62%), Gaps = 1/87 (1%)
Query: 9 FDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTN 68
+DR ++ FSPEGRL+QVEY+ +AI G T++ + + V+ EK+ L++ ++
Sbjct: 9 YDRGVSTFSPEGRLFQVEYSLEAIKLGS-TAIGIATKEGVVLGVEKRATSPLLESDSIEK 67
Query: 69 LYSLTPTVGCVMTGMQADSRYQVQRAR 95
+ + +GC M+G+ AD+R ++ AR
Sbjct: 68 IVEIDRHIGCAMSGLTADARSMIEHAR 94
>pdb|1FNT|E Chain E, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|S Chain S, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|E Chain E, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|S Chain S, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|D Chain D, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|R Chain R, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|D Chain D, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|R Chain R, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3NZJ|D Chain D, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|R Chain R, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|D Chain D, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|R Chain R, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|D Chain D, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|R Chain R, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3OEU|D Chain D, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|R Chain R, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|D Chain D, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|R Chain R, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3UN4|D Chain D, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|R Chain R, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|D Chain D, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|R Chain R, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3SDI|D Chain D, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|R Chain R, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|D Chain D, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|R Chain R, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4B4T|E Chain E, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4INR|D Chain D, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|R Chain R, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|D Chain D, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|R Chain R, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|D Chain D, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|R Chain R, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 260
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 104/200 (52%), Gaps = 7/200 (3%)
Query: 95 RAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKT 154
R+ +DR ++ FSPEGRL+QVEY+ +AI G T++ + + V+ EK+ L++ +
Sbjct: 5 RSEYDRGVSTFSPEGRLFQVEYSLEAIKLGS-TAIGIATKEGVVLGVEKRATSPLLESDS 63
Query: 155 VTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVY 214
+ + + +GC M+G+ AD+R ++ AR A + + + ++ L + D++ +
Sbjct: 64 IEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRF 123
Query: 215 TQNAE------MRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYL 268
+ A RP G ++++ +D ++G ++ +P+G + + A ++G + A + L
Sbjct: 124 GEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAEL 183
Query: 269 EKKFKKKTNYTGDETIQLAI 288
++ E + L I
Sbjct: 184 LNEWHSSLTLKEAELLVLKI 203
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 54/87 (62%), Gaps = 1/87 (1%)
Query: 9 FDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTN 68
+DR ++ FSPEGRL+QVEY+ +AI G T++ + + V+ EK+ L++ ++
Sbjct: 8 YDRGVSTFSPEGRLFQVEYSLEAIKLGS-TAIGIATKEGVVLGVEKRATSPLLESDSIEK 66
Query: 69 LYSLTPTVGCVMTGMQADSRYQVQRAR 95
+ + +GC M+G+ AD+R ++ AR
Sbjct: 67 IVEIDRHIGCAMSGLTADARSMIEHAR 93
>pdb|3UNB|E Chain E, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|S Chain S, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|GG Chain g, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|UU Chain u, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|E Chain E, Mouse Constitutive 20s Proteasome
pdb|3UNE|S Chain S, Mouse Constitutive 20s Proteasome
pdb|3UNE|GG Chain g, Mouse Constitutive 20s Proteasome
pdb|3UNE|UU Chain u, Mouse Constitutive 20s Proteasome
pdb|3UNF|E Chain E, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|S Chain S, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|E Chain E, Mouse 20s Immunoproteasome
pdb|3UNH|S Chain S, Mouse 20s Immunoproteasome
Length = 263
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 101/197 (51%), Gaps = 4/197 (2%)
Query: 95 RAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKT 154
R +D +T++SP+GR++Q+EYA +A+ QG T V +K AV+ K+ L +
Sbjct: 3 RNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSAT-VGLKSKTHAVLVALKRAQSELAAHQ- 60
Query: 155 VTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVY 214
+ + +G + G+ AD+R R E ++ +P+ +L + I +Q+
Sbjct: 61 -KKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIP 119
Query: 215 TQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKK 274
TQ RP G +++ YD+ GP I++T P+ Y +A+S+G ++ A +YLE+ +
Sbjct: 120 TQRYGRRPYGVGLLIAGYDDM-GPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSE 178
Query: 275 KTNYTGDETIQLAISCL 291
DE ++ + L
Sbjct: 179 FMECNLDELVKHGLRAL 195
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 9 FDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTN 68
+D +T++SP+GR++Q+EYA +A+ QG T V +K AV+ K+ L +
Sbjct: 6 YDNDVTVWSPQGRIHQIEYAMEAVKQGSAT-VGLKSKTHAVLVALKRAQSELAAHQ--KK 62
Query: 69 LYSLTPTVGCVMTGMQADSR 88
+ + +G + G+ AD+R
Sbjct: 63 ILHVDNHIGISIAGLTADAR 82
>pdb|1RYP|E Chain E, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|S Chain S, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|D Chain D, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|R Chain R, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|D Chain D, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|Y Chain Y, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|D Chain D, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|R Chain R, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|D Chain D, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|R Chain R, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|D Chain D, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|R Chain R, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|D Chain D, Proteasome Inhibition By Fellutamide B
pdb|3D29|R Chain R, Proteasome Inhibition By Fellutamide B
pdb|3E47|D Chain D, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|R Chain R, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|D Chain D, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|R Chain R, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|D Chain D, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|R Chain R, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|D Chain D, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|R Chain R, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|D Chain D, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|R Chain R, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|D Chain D, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|R Chain R, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|D Chain D, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|R Chain R, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3MG4|D Chain D, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|R Chain R, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|D Chain D, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|R Chain R, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|D Chain D, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|R Chain R, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3TDD|D Chain D, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|R Chain R, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|D Chain D, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|R Chain R, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|4GK7|D Chain D, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|R Chain R, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|D Chain D, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|R Chain R, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|D Chain D, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|R Chain R, 20s Yeast Proteasome In Complex With Glidobactin
Length = 242
Score = 97.8 bits (242), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 101/196 (51%), Gaps = 7/196 (3%)
Query: 99 DRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNL 158
DR ++ FSPEGRL+QVEY+ +AI G T++ + + V+ EK+ L++ ++ +
Sbjct: 1 DRGVSTFSPEGRLFQVEYSLEAIKLGS-TAIGIATKEGVVLGVEKRATSPLLESDSIEKI 59
Query: 159 YSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNA 218
+ +GC M+G+ AD+R ++ AR A + + + ++ L + D++ + + A
Sbjct: 60 VEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGA 119
Query: 219 E------MRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKF 272
RP G ++++ +D ++G ++ +P+G + + A ++G + A + L ++
Sbjct: 120 SGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEW 179
Query: 273 KKKTNYTGDETIQLAI 288
E + L I
Sbjct: 180 HSSLTLKEAELLVLKI 195
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Query: 10 DRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNL 69
DR ++ FSPEGRL+QVEY+ +AI G T++ + + V+ EK+ L++ ++ +
Sbjct: 1 DRGVSTFSPEGRLFQVEYSLEAIKLGS-TAIGIATKEGVVLGVEKRATSPLLESDSIEKI 59
Query: 70 YSLTPTVGCVMTGMQADSRYQVQRAR 95
+ +GC M+G+ AD+R ++ AR
Sbjct: 60 VEIDRHIGCAMSGLTADARSMIEHAR 85
>pdb|1IRU|F Chain F, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|T Chain T, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 263
Score = 97.1 bits (240), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 101/197 (51%), Gaps = 4/197 (2%)
Query: 95 RAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKT 154
R +D +T++SP+GR++Q+EYA +A+ QG T V +K AV+ K+ L +
Sbjct: 3 RNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSAT-VGLKSKTHAVLVALKRAQSELAAHQ- 60
Query: 155 VTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVY 214
+ + +G + G+ AD+R R E ++ +P+ +L + I +Q+
Sbjct: 61 -KKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIP 119
Query: 215 TQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKK 274
TQ RP G +++ YD+ GP I++T P+ Y +A+S+G ++ A +YLE+ +
Sbjct: 120 TQRYGRRPYGVGLLIAGYDDM-GPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSE 178
Query: 275 KTNYTGDETIQLAISCL 291
+E ++ + L
Sbjct: 179 FMECNLNELVKHGLRAL 195
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 9 FDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTN 68
+D +T++SP+GR++Q+EYA +A+ QG T V +K AV+ K+ L +
Sbjct: 6 YDNDVTVWSPQGRIHQIEYAMEAVKQGSAT-VGLKSKTHAVLVALKRAQSELAAHQ--KK 62
Query: 69 LYSLTPTVGCVMTGMQADSR 88
+ + +G + G+ AD+R
Sbjct: 63 ILHVDNHIGISIAGLTADAR 82
>pdb|1VSY|D Chain D, Proteasome Activator Complex
pdb|1VSY|R Chain R, Proteasome Activator Complex
pdb|3L5Q|I Chain I, Proteasome Activator Complex
pdb|3L5Q|U Chain U, Proteasome Activator Complex
Length = 227
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 105/187 (56%), Gaps = 10/187 (5%)
Query: 111 LYQVEYAFKAINQGGVTSVAVKGVDTAVVATEK----KVPDSLVDPKTVTNLYSLTPTVG 166
++QVEYA +A+ +G +V VKG + V+ E+ K+ D+ + P V+ + S V
Sbjct: 1 IFQVEYALEAVKRG-TCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDS---HVV 56
Query: 167 CVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCS 226
+G+ ADSR +++AR EA S + + ++ L +A + Q YTQ+ +RP G S
Sbjct: 57 LSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVS 116
Query: 227 MILISYD-ENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKF-KKKTNYTGDETI 284
++ +D ++ P +Y+T+P+G Y S+ A ++G + +LEK + +K+ T +E +
Sbjct: 117 TLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPPATVEECV 176
Query: 285 QLAISCL 291
+L + L
Sbjct: 177 KLTVRSL 183
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 9/91 (9%)
Query: 22 LYQVEYAFKAINQGGVTSVAVKGVDTAVVATEK----KVPDSLVDPKTVTNLYSLTPTVG 77
++QVEYA +A+ + G +V VKG + V+ E+ K+ D+ + P V+ + S V
Sbjct: 1 IFQVEYALEAVKR-GTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDS---HVV 56
Query: 78 CVMTGMQADSRYQVQRARAGFDRH-ITIFSP 107
+G+ ADSR +++AR H +T+ P
Sbjct: 57 LSFSGLNADSRILIEKARVEAQSHRLTLEDP 87
>pdb|3SDI|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
Length = 233
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 98/203 (48%), Gaps = 14/203 (6%)
Query: 95 RAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKT 154
R +D FSP GRL+QVEYA +AI QG VT V ++ AV+ K+ D L +
Sbjct: 2 RNNYDGDTVTFSPTGRLFQVEYALEAIKQGSVT-VGLRSNTHAVLVALKRNADELSSYQ- 59
Query: 155 VTNLYSLTPTVGCVMTGMQADSR----YQVQRARYEAASFKYKHGYSMPIDQLCNRIADI 210
+ +G + G+ D+R Y Q+ Y + F K + +++ + + D
Sbjct: 60 -KKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRK----LAVERAGHLLCDK 114
Query: 211 SQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEK 270
+Q TQ+A RP G +++I YD++ G + + P+G ++G ++ A +YLE+
Sbjct: 115 AQKNTQSAGGRPYGVGLLIIGYDKS-GAHLLEFQPSGNVTELYGTAIGARSQGAKTYLER 173
Query: 271 KFKK--KTNYTGDETIQLAISCL 291
K + DE I+ + +
Sbjct: 174 TLDTFIKIDGNPDELIKAGVEAI 196
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 9 FDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTN 68
+D FSP GRL+QVEYA +AI QG VT V ++ AV+ K+ D L +
Sbjct: 5 YDGDTVTFSPTGRLFQVEYALEAIKQGSVT-VGLRSNTHAVLVALKRNADELSSYQ--KK 61
Query: 69 LYSLTPTVGCVMTGMQADSR 88
+ +G + G+ D+R
Sbjct: 62 IIKCDEHMGLSLAGLAPDAR 81
>pdb|1G0U|E Chain E, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|S Chain S, A Gated Channel Into The Proteasome Core Particle
Length = 234
Score = 81.3 bits (199), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 98/203 (48%), Gaps = 14/203 (6%)
Query: 95 RAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKT 154
R +D FSP GRL+QVEYA +AI QG VT V ++ AV+ K+ D L +
Sbjct: 3 RNNYDGDTVTFSPTGRLFQVEYALEAIKQGSVT-VGLRSNTHAVLVALKRNADELSSYQ- 60
Query: 155 VTNLYSLTPTVGCVMTGMQADSR----YQVQRARYEAASFKYKHGYSMPIDQLCNRIADI 210
+ +G + G+ D+R Y Q+ Y + F K + +++ + + D
Sbjct: 61 -KKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRK----LAVERAGHLLCDK 115
Query: 211 SQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEK 270
+Q TQ+A RP G +++I YD++ G + + P+G ++G ++ A +YLE+
Sbjct: 116 AQKNTQSAGGRPYGVGLLIIGYDKS-GAHLLEFQPSGNVTELYGTAIGARSQGAKTYLER 174
Query: 271 KFKK--KTNYTGDETIQLAISCL 291
K + DE I+ + +
Sbjct: 175 TLDTFIKIDGNPDELIKAGVEAI 197
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 9 FDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTN 68
+D FSP GRL+QVEYA +AI QG VT V ++ AV+ K+ D L +
Sbjct: 6 YDGDTVTFSPTGRLFQVEYALEAIKQGSVT-VGLRSNTHAVLVALKRNADELSSYQ--KK 62
Query: 69 LYSLTPTVGCVMTGMQADSR 88
+ +G + G+ D+R
Sbjct: 63 IIKCDEHMGLSLAGLAPDAR 82
>pdb|1FNT|F Chain F, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|T Chain T, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|F Chain F, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|T Chain T, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|E Chain E, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|S Chain S, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|E Chain E, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|S Chain S, Yeast 20s Proteasome:glidobactin A-Complex
pdb|1VSY|F Chain F, Proteasome Activator Complex
pdb|1VSY|T Chain T, Proteasome Activator Complex
pdb|3L5Q|K Chain K, Proteasome Activator Complex
pdb|3L5Q|W Chain W, Proteasome Activator Complex
pdb|3NZJ|E Chain E, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|S Chain S, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3MG6|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3UN4|E Chain E, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|S Chain S, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|E Chain E, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|S Chain S, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4B4T|F Chain F, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4INR|E Chain E, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|S Chain S, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|E Chain E, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|S Chain S, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|E Chain E, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|S Chain S, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 234
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 97/203 (47%), Gaps = 14/203 (6%)
Query: 95 RAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKT 154
R +D FSP GRL+QVEYA +AI QG VT V ++ AV+ K+ D L +
Sbjct: 3 RNNYDGDTVTFSPTGRLFQVEYALEAIKQGSVT-VGLRSNTHAVLVALKRNADELSSYQ- 60
Query: 155 VTNLYSLTPTVGCVMTGMQADSR----YQVQRARYEAASFKYKHGYSMPIDQLCNRIADI 210
+ +G + G+ D+R Y Q+ Y + F K + +++ + + D
Sbjct: 61 -KKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRK----LAVERAGHLLCDK 115
Query: 211 SQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEK 270
+Q TQ+ RP G +++I YD++ G + + P+G ++G ++ A +YLE+
Sbjct: 116 AQKNTQSYGGRPYGVGLLIIGYDKS-GAHLLEFQPSGNVTELYGTAIGARSQGAKTYLER 174
Query: 271 KFKK--KTNYTGDETIQLAISCL 291
K + DE I+ + +
Sbjct: 175 TLDTFIKIDGNPDELIKAGVEAI 197
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 9 FDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTN 68
+D FSP GRL+QVEYA +AI QG VT V ++ AV+ K+ D L +
Sbjct: 6 YDGDTVTFSPTGRLFQVEYALEAIKQGSVT-VGLRSNTHAVLVALKRNADELSSYQ--KK 62
Query: 69 LYSLTPTVGCVMTGMQADSR 88
+ +G + G+ D+R
Sbjct: 63 IIKCDEHMGLSLAGLAPDAR 82
>pdb|4G4S|F Chain F, Structure Of Proteasome-Pba1-Pba2 Complex
Length = 235
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 97/203 (47%), Gaps = 14/203 (6%)
Query: 95 RAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKT 154
R +D FSP GRL+QVEYA +AI QG VT V ++ AV+ K+ D L +
Sbjct: 4 RNNYDGDTVTFSPTGRLFQVEYALEAIKQGSVT-VGLRSNTHAVLVALKRNADELSSYQ- 61
Query: 155 VTNLYSLTPTVGCVMTGMQADSR----YQVQRARYEAASFKYKHGYSMPIDQLCNRIADI 210
+ +G + G+ D+R Y Q+ Y + F K + +++ + + D
Sbjct: 62 -KKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRK----LAVERAGHLLCDK 116
Query: 211 SQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEK 270
+Q TQ+ RP G +++I YD++ G + + P+G ++G ++ A +YLE+
Sbjct: 117 AQKNTQSYGGRPYGVGLLIIGYDKS-GAHLLEFQPSGNVTELYGTAIGARSQGAKTYLER 175
Query: 271 KFKK--KTNYTGDETIQLAISCL 291
K + DE I+ + +
Sbjct: 176 TLDTFIKIDGNPDELIKAGVEAI 198
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 9 FDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTN 68
+D FSP GRL+QVEYA +AI QG VT V ++ AV+ K+ D L +
Sbjct: 7 YDGDTVTFSPTGRLFQVEYALEAIKQGSVT-VGLRSNTHAVLVALKRNADELSSYQ--KK 63
Query: 69 LYSLTPTVGCVMTGMQADSR 88
+ +G + G+ D+R
Sbjct: 64 IIKCDEHMGLSLAGLAPDAR 83
>pdb|1RYP|F Chain F, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|T Chain T, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|E Chain E, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|S Chain S, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|E Chain E, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|Z Chain Z, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|E Chain E, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|S Chain S, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|E Chain E, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|S Chain S, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|E Chain E, Proteasome Inhibition By Fellutamide B
pdb|3D29|S Chain S, Proteasome Inhibition By Fellutamide B
pdb|3E47|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|E Chain E, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|S Chain S, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|E Chain E, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|S Chain S, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|E Chain E, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|S Chain S, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3MG4|E Chain E, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|S Chain S, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|E Chain E, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|S Chain S, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|E Chain E, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|S Chain S, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|E Chain E, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|S Chain S, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|E Chain E, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|S Chain S, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SDK|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|E Chain E, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|S Chain S, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|E Chain E, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|S Chain S, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|E Chain E, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|S Chain S, 20s Yeast Proteasome In Complex With Glidobactin
Length = 233
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 97/203 (47%), Gaps = 14/203 (6%)
Query: 95 RAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKT 154
R +D FSP GRL+QVEYA +AI QG VT V ++ AV+ K+ D L +
Sbjct: 2 RNNYDGDTVTFSPTGRLFQVEYALEAIKQGSVT-VGLRSNTHAVLVALKRNADELSSYQ- 59
Query: 155 VTNLYSLTPTVGCVMTGMQADSR----YQVQRARYEAASFKYKHGYSMPIDQLCNRIADI 210
+ +G + G+ D+R Y Q+ Y + F K + +++ + + D
Sbjct: 60 -KKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRK----LAVERAGHLLCDK 114
Query: 211 SQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEK 270
+Q TQ+ RP G +++I YD++ G + + P+G ++G ++ A +YLE+
Sbjct: 115 AQKNTQSYGGRPYGVGLLIIGYDKS-GAHLLEFQPSGNVTELYGTAIGARSQGAKTYLER 173
Query: 271 KFKK--KTNYTGDETIQLAISCL 291
K + DE I+ + +
Sbjct: 174 TLDTFIKIDGNPDELIKAGVEAI 196
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 9 FDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTN 68
+D FSP GRL+QVEYA +AI QG VT V ++ AV+ K+ D L +
Sbjct: 5 YDGDTVTFSPTGRLFQVEYALEAIKQGSVT-VGLRSNTHAVLVALKRNADELSSYQ--KK 61
Query: 69 LYSLTPTVGCVMTGMQADSR 88
+ +G + G+ D+R
Sbjct: 62 IIKCDEHMGLSLAGLAPDAR 81
>pdb|3H4P|AA Chain a, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|BB Chain b, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|CC Chain c, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|DD Chain d, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|EE Chain e, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|FF Chain f, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|GG Chain g, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|HH Chain h, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|II Chain i, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|JJ Chain j, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|KK Chain k, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|LL Chain l, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|MM Chain m, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|NN Chain n, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
Length = 219
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 76/167 (45%), Gaps = 8/167 (4%)
Query: 127 TSVAVKGVDTAVVATEKKVP-DSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARY 185
T+V + D ++AT+K+ +LV K LY + + + G D++ V+
Sbjct: 3 TTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIA 62
Query: 186 EAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDP 245
EA +K + G ++P +++I ++ M P +I+ YD EG ++ DP
Sbjct: 63 EAKLYKMRTGRNIPPLACATLLSNI----LHSSRMFPFLTQIIIGGYDLLEGAKLFSLDP 118
Query: 246 AGYYCSFKA-VSVGVKTTEANSYLEKKFKKKTNYTGDETIQLAISCL 291
G K + G + A LE + + + + +E I+LA++ L
Sbjct: 119 LGGMNEEKTFTATGSGSPIAYGVLEAGYDR--DMSVEEGIKLALNAL 163
>pdb|1YA7|H Chain H, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|I Chain I, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|J Chain J, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|K Chain K, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|L Chain L, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|M Chain M, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|N Chain N, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YAR|H Chain H, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|I Chain I, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|J Chain J, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|K Chain K, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|L Chain L, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|M Chain M, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|N Chain N, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAU|H Chain H, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|I Chain I, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|J Chain J, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|K Chain K, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|L Chain L, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|M Chain M, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|N Chain N, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|3IPM|H Chain H, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|I Chain I, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|J Chain J, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|K Chain K, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|L Chain L, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|M Chain M, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|N Chain N, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
Length = 217
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/168 (20%), Positives = 73/168 (43%), Gaps = 9/168 (5%)
Query: 125 GVTSVAVKGVDTAVVATEKKVP-DSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRA 183
G T+V + D ++ATE++V ++ + K L+ + G + G+ D++ V+
Sbjct: 8 GTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYM 67
Query: 184 RYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKT 243
+ E ++ + +MPI+ + ++++ + P +++ D P ++
Sbjct: 68 KAELELYRLQRRVNMPIEAVATLLSNM----LNQVKYMPYMVQLLVGGID--TAPHVFSI 121
Query: 244 DPAGYYCSFKAVSVGVKTTEANSYLEKKFKKKTNYTGDETIQLAISCL 291
D AG S G + LE ++ +K T DE + L I +
Sbjct: 122 DAAGGSVEDIYASTGSGSPFVYGVLESQYSEK--MTVDEGVDLVIRAI 167
>pdb|1PMA|B Chain B, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|P Chain P, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|Q Chain Q, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|R Chain R, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|S Chain S, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|T Chain T, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|U Chain U, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|V Chain V, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|W Chain W, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|X Chain X, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|Y Chain Y, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|Z Chain Z, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|1 Chain 1, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|2 Chain 2, Proteasome From Thermoplasma Acidophilum
Length = 211
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/168 (20%), Positives = 73/168 (43%), Gaps = 9/168 (5%)
Query: 125 GVTSVAVKGVDTAVVATEKKVP-DSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRA 183
G T+V + D ++ATE++V ++ + K L+ + G + G+ D++ V+
Sbjct: 8 GTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYM 67
Query: 184 RYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKT 243
+ E ++ + +MPI+ + ++++ + P +++ D P ++
Sbjct: 68 KAELELYRLQRRVNMPIEAVATLLSNM----LNQVKYMPYMVQLLVGGID--TAPHVFSI 121
Query: 244 DPAGYYCSFKAVSVGVKTTEANSYLEKKFKKKTNYTGDETIQLAISCL 291
D AG S G + LE ++ +K T DE + L I +
Sbjct: 122 DAAGGSVEDIYASTGSGSPFVYGVLESQYSEK--MTVDEGVDLVIRAI 167
>pdb|3UNF|H Chain H, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|V Chain V, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|H Chain H, Mouse 20s Immunoproteasome
pdb|3UNH|V Chain V, Mouse 20s Immunoproteasome
Length = 234
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 58/129 (44%), Gaps = 10/129 (7%)
Query: 147 DSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNR 206
DS+V K+ ++ + P + C G+ AD+ + AAS H S + R
Sbjct: 23 DSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRM----AASKMELHALSTGREP---R 75
Query: 207 IADISQVYTQNA--EMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEA 264
+A ++++ Q +G S+++ D N GP +Y+ P G Y ++G A
Sbjct: 76 VATVTRILRQTLFRYQGHVGASLVVGGVDLN-GPQLYEVHPHGSYSRLPFTALGSGQGAA 134
Query: 265 NSYLEKKFK 273
+ LE +F+
Sbjct: 135 VALLEDRFQ 143
>pdb|1G0U|L Chain L, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|Z Chain Z, A Gated Channel Into The Proteasome Core Particle
pdb|2ZCY|L Chain L, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|Z Chain Z, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|L Chain L, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|Z Chain Z, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3NZJ|L Chain L, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|Z Chain Z, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|L Chain L, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|Z Chain Z, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|L Chain L, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|Z Chain Z, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3MG6|L Chain L, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|Z Chain Z, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|L Chain L, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|Z Chain Z, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|L Chain L, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|Z Chain Z, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|4B4T|6 Chain 6, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 241
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 34/176 (19%), Positives = 64/176 (36%), Gaps = 6/176 (3%)
Query: 105 FSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATE-KKVPDSLVDPKTVTNLYSLTP 163
+S E +E+ F G T + + G D AV+A + + + D ++ + ++
Sbjct: 8 YSSEASNTPIEHQFNPYGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGD 67
Query: 164 TVGCVMTGMQADSRYQVQRARYEAASFKYKHG-YSMPIDQLCNRIADISQVYTQNAEMRP 222
+ G AD V+R + + + H + I+ I Q P
Sbjct: 68 NIVMSANGFAADGDALVKRFKNSVKWYHFDHNDKKLSINSAARNI----QHLLYGKRFFP 123
Query: 223 LGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKKKTNY 278
I+ DE+ +Y DP G Y + + G + +L+ + K Y
Sbjct: 124 YYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQY 179
>pdb|1IRU|K Chain K, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|Y Chain Y, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 201
Score = 34.3 bits (77), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 57/124 (45%), Gaps = 17/124 (13%)
Query: 129 VAVKGVDTAVVATEKKVPDSLVDPKTVTN-LYSLTPTVGCVMTGMQADSRYQVQRARY-- 185
+ ++G D +VA+++ ++V K + ++ ++ + + G D+ VQ A Y
Sbjct: 5 IGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDT---VQFAEYIQ 61
Query: 186 -EAASFKYKHGYSMPIDQLCN----RIADISQVYTQNAEMRPLGCSMILISYDENEGPLI 240
+K ++GY + N +AD + T P +++L YDE+EGP +
Sbjct: 62 KNVQLYKMRNGYELSPTAAANFTRRNLADCLRSRT------PYHVNLLLAGYDEHEGPAL 115
Query: 241 YKTD 244
Y D
Sbjct: 116 YYMD 119
>pdb|3UNB|J Chain J, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|X Chain X, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|LL Chain l, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|ZZ Chain z, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|J Chain J, Mouse Constitutive 20s Proteasome
pdb|3UNE|X Chain X, Mouse Constitutive 20s Proteasome
pdb|3UNE|LL Chain l, Mouse Constitutive 20s Proteasome
pdb|3UNE|ZZ Chain z, Mouse Constitutive 20s Proteasome
pdb|3UNF|J Chain J, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|X Chain X, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|J Chain J, Mouse 20s Immunoproteasome
pdb|3UNH|X Chain X, Mouse 20s Immunoproteasome
Length = 201
Score = 34.3 bits (77), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 57/124 (45%), Gaps = 17/124 (13%)
Query: 129 VAVKGVDTAVVATEKKVPDSLVDPKTVTN-LYSLTPTVGCVMTGMQADSRYQVQRARY-- 185
+ ++G D +VA+++ ++V K + ++ ++ + + G D+ VQ A Y
Sbjct: 5 IGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDT---VQFAEYIQ 61
Query: 186 -EAASFKYKHGYSMPIDQLCN----RIADISQVYTQNAEMRPLGCSMILISYDENEGPLI 240
+K ++GY + N +AD + T P +++L YDE+EGP +
Sbjct: 62 KNVQLYKMRNGYELSPTAAANFTRRNLADCLRSRT------PYHVNLLLAGYDEHEGPAL 115
Query: 241 YKTD 244
Y D
Sbjct: 116 YYMD 119
>pdb|1J2Q|H Chain H, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|I Chain I, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|J Chain J, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|K Chain K, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|L Chain L, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|M Chain M, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|N Chain N, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
Length = 202
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 69/167 (41%), Gaps = 9/167 (5%)
Query: 127 TSVAVKGVDTAVVATEKKVP-DSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARY 185
T+V + D V+ATEK+ + + K +Y + + G D+++ + +
Sbjct: 2 TTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKI 61
Query: 186 EAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDP 245
EA ++ + + + +++ Y + L LI ++EG IY DP
Sbjct: 62 EANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQL-----LIGGIDSEGKSIYSIDP 116
Query: 246 AGYYCSFK-AVSVGVKTTEANSYLEKKFKKKTNYTGDETIQLAISCL 291
G K V+ G + A LE +F + DE ++LA+ +
Sbjct: 117 IGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGV--DEAVELAVRAI 161
>pdb|1NKT|A Chain A, Crystal Structure Of The Seca Protein Translocation Atpase
From Mycobacterium Tuberculosis Complex With Adpbs
pdb|1NKT|B Chain B, Crystal Structure Of The Seca Protein Translocation Atpase
From Mycobacterium Tuberculosis Complex With Adpbs
pdb|1NL3|A Chain A, Crystal Structure Of The Seca Protein Translocation Atpase
From Mycobacterium Tuberculosis In Apo Form
pdb|1NL3|B Chain B, Crystal Structure Of The Seca Protein Translocation Atpase
From Mycobacterium Tuberculosis In Apo Form
Length = 922
Score = 32.3 bits (72), Expect = 0.36, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 14/78 (17%)
Query: 208 ADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGY----------YCSFKAVSV 257
A++ ++Y P MI E++ LIYKT+ A Y Y + V +
Sbjct: 410 AELHEIYKLGVVSIPTNMPMI----REDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLI 465
Query: 258 GVKTTEANSYLEKKFKKK 275
G + E + YL ++F K+
Sbjct: 466 GTTSVERSEYLSRQFTKR 483
>pdb|1RYP|M Chain M, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|1 Chain 1, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|L Chain L, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|Z Chain Z, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1FNT|M Chain M, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|AA Chain a, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1JD2|L Chain L, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|S Chain S, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1Z7Q|M Chain M, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|AA Chain a, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2F16|L Chain L, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|Z Chain Z, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|L Chain L, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|Z Chain Z, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|L Chain L, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|Z Chain Z, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|L Chain L, Proteasome Inhibition By Fellutamide B
pdb|3D29|Z Chain Z, Proteasome Inhibition By Fellutamide B
pdb|3E47|L Chain L, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|Z Chain Z, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|L Chain L, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|Z Chain Z, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|L Chain L, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|Z Chain Z, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|L Chain L, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|Z Chain Z, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|L Chain L, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|Z Chain Z, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|L Chain L, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|Z Chain Z, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|L Chain L, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|Z Chain Z, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|1VSY|M Chain M, Proteasome Activator Complex
pdb|1VSY|1 Chain 1, Proteasome Activator Complex
pdb|3L5Q|Q Chain Q, Proteasome Activator Complex
pdb|3L5Q|3 Chain 3, Proteasome Activator Complex
pdb|3MG4|L Chain L, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|Z Chain Z, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|L Chain L, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|Z Chain Z, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|L Chain L, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|Z Chain Z, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|L Chain L, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|Z Chain Z, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|L Chain L, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|Z Chain Z, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|L Chain L, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|Z Chain Z, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|L Chain L, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|Z Chain Z, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3UN4|L Chain L, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|Z Chain Z, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|L Chain L, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|Z Chain Z, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3SDI|L Chain L, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|Z Chain Z, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|L Chain L, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|Z Chain Z, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|L Chain L, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|Z Chain Z, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4G4S|M Chain M, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4FZC|L Chain L, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|Z Chain Z, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|L Chain L, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|Z Chain Z, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4INR|L Chain L, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|Z Chain Z, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|L Chain L, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|Z Chain Z, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|L Chain L, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|Z Chain Z, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 222
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 31/163 (19%), Positives = 58/163 (35%), Gaps = 6/163 (3%)
Query: 118 FKAINQGGVTSVAVKGVDTAVVATE-KKVPDSLVDPKTVTNLYSLTPTVGCVMTGMQADS 176
F G T + + G D AV+A + + + D ++ + ++ + G AD
Sbjct: 2 FNPYGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADG 61
Query: 177 RYQVQRARYEAASFKYKHG-YSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDEN 235
V+R + + + H + I+ I Q P I+ DE+
Sbjct: 62 DALVKRFKNSVKWYHFDHNDKKLSINSAARNI----QHLLYGKRFFPYYVHTIIAGLDED 117
Query: 236 EGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKKKTNY 278
+Y DP G Y + + G + +L+ + K Y
Sbjct: 118 GKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQY 160
>pdb|3UNB|K Chain K, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|Y Chain Y, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|MM Chain m, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|1 Chain 1, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|K Chain K, Mouse Constitutive 20s Proteasome
pdb|3UNE|Y Chain Y, Mouse Constitutive 20s Proteasome
pdb|3UNE|MM Chain m, Mouse Constitutive 20s Proteasome
pdb|3UNE|1 Chain 1, Mouse Constitutive 20s Proteasome
Length = 205
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 30/148 (20%), Positives = 65/148 (43%), Gaps = 8/148 (5%)
Query: 127 TSVAVKGVDTAVVATEKKV-PDSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARY 185
T++A K + +VA + + + + +TV + + P + M G AD + +
Sbjct: 2 TTLAFKFLHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLAR 61
Query: 186 EAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSM-ILISYDENEGPLIYKTD 244
+ ++ ++ + + +A++ VY + + +G SM +I + GP +Y D
Sbjct: 62 QCRIYELRNKERISVAAASKLLANM--VY----QYKGMGLSMGTMICGWDKRGPGLYYVD 115
Query: 245 PAGYYCSFKAVSVGVKTTEANSYLEKKF 272
G S A SVG + A +++ +
Sbjct: 116 SEGNRISGTAFSVGSGSVYAYGVMDRGY 143
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,283,779
Number of Sequences: 62578
Number of extensions: 321263
Number of successful extensions: 995
Number of sequences better than 100.0: 73
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 770
Number of HSP's gapped (non-prelim): 132
length of query: 291
length of database: 14,973,337
effective HSP length: 98
effective length of query: 193
effective length of database: 8,840,693
effective search space: 1706253749
effective search space used: 1706253749
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)