Query psy8777
Match_columns 291
No_of_seqs 249 out of 2247
Neff 8.7
Searched_HMMs 46136
Date Fri Aug 16 19:01:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8777.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8777hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0176|consensus 100.0 4.3E-52 9.3E-57 331.6 14.9 194 5-291 4-202 (241)
2 cd03751 proteasome_alpha_type_ 100.0 5.9E-51 1.3E-55 346.9 22.7 192 7-291 2-193 (212)
3 cd03754 proteasome_alpha_type_ 100.0 1.6E-50 3.5E-55 345.3 23.0 195 8-291 1-197 (215)
4 cd03750 proteasome_alpha_type_ 100.0 2.3E-50 4.9E-55 347.4 22.6 190 9-291 1-190 (227)
5 cd03752 proteasome_alpha_type_ 100.0 9.9E-50 2.2E-54 340.3 24.4 193 7-291 1-194 (213)
6 KOG0182|consensus 100.0 2.9E-50 6.3E-55 324.5 18.9 202 1-291 1-202 (246)
7 PTZ00246 proteasome subunit al 100.0 6.2E-49 1.3E-53 343.6 23.9 193 7-291 3-196 (253)
8 KOG0183|consensus 100.0 5.2E-50 1.1E-54 323.6 14.5 195 7-291 2-196 (249)
9 KOG0184|consensus 100.0 3E-49 6.6E-54 320.8 18.9 195 4-291 3-197 (254)
10 cd03749 proteasome_alpha_type_ 100.0 2.7E-48 5.9E-53 330.8 23.8 190 9-291 1-190 (211)
11 PRK03996 proteasome subunit al 100.0 1.9E-48 4.2E-53 338.4 22.8 195 4-291 5-199 (241)
12 COG0638 PRE1 20S proteasome, a 100.0 1.6E-47 3.5E-52 330.1 22.2 191 7-291 1-192 (236)
13 cd03755 proteasome_alpha_type_ 100.0 5.5E-46 1.2E-50 315.9 23.1 191 98-291 1-191 (207)
14 KOG0181|consensus 100.0 6.1E-46 1.3E-50 295.8 15.5 193 6-291 3-195 (233)
15 KOG0178|consensus 100.0 2.9E-45 6.2E-50 295.3 17.8 194 7-291 3-197 (249)
16 KOG0863|consensus 100.0 3.8E-45 8.2E-50 298.4 16.9 193 6-291 3-195 (264)
17 cd03756 proteasome_alpha_arche 100.0 5.4E-44 1.2E-48 304.7 22.9 191 97-291 1-191 (211)
18 TIGR03633 arc_protsome_A prote 100.0 1.5E-43 3.2E-48 304.7 22.7 191 97-291 2-192 (224)
19 cd03753 proteasome_alpha_type_ 100.0 2.6E-43 5.7E-48 300.8 22.5 190 98-291 1-195 (213)
20 cd01911 proteasome_alpha prote 100.0 2.9E-43 6.3E-48 299.8 22.4 191 98-291 1-191 (209)
21 cd03758 proteasome_beta_type_2 100.0 3E-35 6.6E-40 247.3 19.4 162 126-291 2-164 (193)
22 cd03760 proteasome_beta_type_4 100.0 8.1E-35 1.7E-39 245.6 19.2 164 126-291 3-168 (197)
23 cd03759 proteasome_beta_type_3 100.0 1.1E-34 2.4E-39 244.3 18.8 162 123-291 2-165 (195)
24 cd03761 proteasome_beta_type_5 100.0 3E-34 6.6E-39 240.3 19.1 159 126-291 1-160 (188)
25 TIGR03691 20S_bact_alpha prote 100.0 1E-33 2.2E-38 242.7 19.2 168 113-291 16-186 (228)
26 TIGR03690 20S_bact_beta protea 100.0 1.3E-33 2.7E-38 241.8 19.0 164 124-291 2-168 (219)
27 cd03765 proteasome_beta_bacter 100.0 2.7E-33 5.8E-38 240.4 20.0 163 126-291 1-178 (236)
28 cd03757 proteasome_beta_type_1 100.0 1.9E-33 4.1E-38 239.6 18.7 165 120-291 4-178 (212)
29 TIGR03634 arc_protsome_B prote 100.0 3.7E-33 7.9E-38 233.3 19.4 159 126-291 2-161 (185)
30 cd03755 proteasome_alpha_type_ 100.0 1.5E-33 3.2E-38 239.6 16.4 202 9-229 1-206 (207)
31 cd03764 proteasome_beta_archea 100.0 1.4E-32 3E-37 230.4 19.2 159 126-291 1-160 (188)
32 PF00227 Proteasome: Proteasom 100.0 1.2E-32 2.7E-37 231.0 17.8 167 122-291 2-171 (190)
33 cd03762 proteasome_beta_type_6 100.0 2.3E-32 5E-37 229.0 19.1 159 126-291 1-160 (188)
34 cd03763 proteasome_beta_type_7 100.0 2.2E-32 4.8E-37 229.3 18.8 158 126-291 1-159 (189)
35 cd01906 proteasome_protease_Hs 100.0 8.5E-32 1.9E-36 224.3 20.3 162 126-291 1-163 (182)
36 PTZ00488 Proteasome subunit be 100.0 5E-32 1.1E-36 235.0 19.2 163 121-291 36-199 (247)
37 cd03756 proteasome_alpha_arche 100.0 2.9E-32 6.3E-37 232.4 17.2 206 8-231 1-210 (211)
38 cd01912 proteasome_beta protea 100.0 8.9E-32 1.9E-36 225.7 18.9 160 126-291 1-161 (189)
39 TIGR03633 arc_protsome_A prote 100.0 6.1E-32 1.3E-36 232.5 17.3 207 7-231 1-211 (224)
40 cd03753 proteasome_alpha_type_ 100.0 1.3E-31 2.8E-36 228.7 16.2 204 9-229 1-212 (213)
41 cd01911 proteasome_alpha prote 100.0 3.9E-31 8.4E-36 225.2 15.8 203 9-228 1-207 (209)
42 KOG0177|consensus 100.0 3E-29 6.5E-34 199.8 14.1 161 127-291 3-164 (200)
43 KOG0179|consensus 99.9 5.3E-25 1.1E-29 178.0 15.8 167 120-291 25-201 (235)
44 KOG0174|consensus 99.9 1.7E-25 3.7E-30 178.8 11.8 160 125-291 19-179 (224)
45 cd01901 Ntn_hydrolase The Ntn 99.9 7.3E-24 1.6E-28 172.2 20.5 159 127-291 2-162 (164)
46 KOG0185|consensus 99.9 2.3E-25 4.9E-30 183.1 10.8 169 120-291 37-208 (256)
47 KOG0173|consensus 99.9 6E-25 1.3E-29 182.4 13.1 161 123-291 35-196 (271)
48 KOG0180|consensus 99.9 8E-24 1.7E-28 166.2 14.5 162 123-291 7-170 (204)
49 KOG0175|consensus 99.9 4.3E-24 9.4E-29 177.7 12.1 160 125-291 71-231 (285)
50 PRK05456 ATP-dependent proteas 99.9 2.9E-23 6.2E-28 170.1 15.6 147 126-291 2-153 (172)
51 TIGR03691 20S_bact_alpha prote 99.9 2.7E-22 5.8E-27 172.2 16.4 185 25-231 17-208 (228)
52 cd01913 protease_HslV Protease 99.9 5.2E-22 1.1E-26 161.4 15.4 145 126-290 1-151 (171)
53 TIGR03692 ATP_dep_HslV ATP-dep 99.9 1.7E-21 3.7E-26 158.4 15.1 147 126-291 1-152 (171)
54 cd03760 proteasome_beta_type_4 99.8 2.2E-19 4.7E-24 151.5 14.1 174 35-230 2-187 (197)
55 cd03765 proteasome_beta_bacter 99.8 7.5E-19 1.6E-23 151.1 15.8 181 38-231 2-198 (236)
56 cd03759 proteasome_beta_type_3 99.8 4.2E-19 9.2E-24 149.5 13.7 173 34-230 2-184 (195)
57 cd03758 proteasome_beta_type_2 99.8 5.1E-19 1.1E-23 148.7 13.2 173 37-230 2-183 (193)
58 cd03761 proteasome_beta_type_5 99.8 1.1E-18 2.4E-23 146.1 14.2 171 37-231 1-180 (188)
59 cd03757 proteasome_beta_type_1 99.8 1.7E-18 3.6E-23 147.7 15.0 180 32-230 5-197 (212)
60 TIGR03690 20S_bact_beta protea 99.8 5.7E-18 1.2E-22 145.1 15.1 166 34-216 1-173 (219)
61 KOG0176|consensus 99.8 2.2E-19 4.7E-24 144.3 5.8 87 94-181 4-90 (241)
62 cd03762 proteasome_beta_type_6 99.8 1.6E-17 3.5E-22 139.1 15.0 170 37-230 1-179 (188)
63 PTZ00488 Proteasome subunit be 99.8 1.3E-17 2.8E-22 144.8 14.2 180 31-230 35-218 (247)
64 TIGR03634 arc_protsome_B prote 99.8 1.7E-17 3.7E-22 138.6 13.3 170 37-230 2-180 (185)
65 PF00227 Proteasome: Proteasom 99.7 5.8E-18 1.3E-22 141.8 9.6 178 32-229 1-189 (190)
66 cd01912 proteasome_beta protea 99.7 4.7E-17 1E-21 136.4 14.3 175 37-230 1-180 (189)
67 cd03750 proteasome_alpha_type_ 99.7 8.3E-18 1.8E-22 144.9 9.2 81 98-179 1-81 (227)
68 cd03751 proteasome_alpha_type_ 99.7 9.1E-18 2E-22 143.0 8.9 81 96-177 2-82 (212)
69 cd03754 proteasome_alpha_type_ 99.7 1.3E-17 2.8E-22 142.4 9.0 75 97-171 1-75 (215)
70 cd03764 proteasome_beta_archea 99.7 7.6E-17 1.6E-21 135.0 13.1 171 37-231 1-180 (188)
71 KOG0184|consensus 99.7 1.3E-17 2.8E-22 136.5 8.0 83 96-179 6-88 (254)
72 cd01906 proteasome_protease_Hs 99.7 1.6E-16 3.4E-21 132.2 14.2 160 37-217 1-169 (182)
73 cd03763 proteasome_beta_type_7 99.7 1.4E-16 3.1E-21 133.5 14.0 172 37-230 1-178 (189)
74 KOG0182|consensus 99.7 1.2E-17 2.7E-22 135.7 7.1 83 96-178 7-89 (246)
75 KOG0173|consensus 99.7 1.2E-16 2.6E-21 133.2 8.7 162 29-213 31-198 (271)
76 PRK03996 proteasome subunit al 99.7 1.3E-16 2.7E-21 138.8 9.1 87 94-181 6-92 (241)
77 KOG0183|consensus 99.7 6.7E-17 1.5E-21 131.6 6.7 149 96-258 2-152 (249)
78 PF10584 Proteasome_A_N: Prote 99.7 2.4E-17 5.2E-22 86.9 1.5 23 9-31 1-23 (23)
79 COG0638 PRE1 20S proteasome, a 99.6 3.3E-15 7.1E-20 129.1 9.2 81 97-177 2-83 (236)
80 KOG0181|consensus 99.5 7.2E-15 1.6E-19 118.1 3.7 84 97-181 5-88 (233)
81 KOG0863|consensus 99.5 7.6E-14 1.6E-18 115.1 6.4 85 94-181 2-86 (264)
82 cd01913 protease_HslV Protease 99.5 3.1E-13 6.7E-18 110.1 9.8 62 37-98 1-64 (171)
83 PRK05456 ATP-dependent proteas 99.5 1E-12 2.2E-17 107.8 12.3 62 37-98 2-65 (172)
84 TIGR03692 ATP_dep_HslV ATP-dep 99.4 3.3E-12 7.3E-17 104.1 10.2 63 37-99 1-65 (171)
85 KOG0174|consensus 99.3 1.6E-11 3.5E-16 99.0 9.1 196 31-249 15-216 (224)
86 cd03752 proteasome_alpha_type_ 99.2 4.3E-11 9.4E-16 102.1 10.3 88 130-229 124-212 (213)
87 cd01901 Ntn_hydrolase The Ntn 99.2 1.7E-10 3.6E-15 93.3 12.9 158 37-211 1-162 (164)
88 KOG0175|consensus 99.2 1.4E-11 3E-16 103.3 6.5 196 9-251 52-258 (285)
89 cd03749 proteasome_alpha_type_ 99.2 4.7E-11 1E-15 101.7 9.9 90 130-231 119-211 (211)
90 KOG0180|consensus 99.2 1.4E-10 2.9E-15 91.9 11.1 174 34-234 7-193 (204)
91 KOG0179|consensus 99.2 1.1E-11 2.3E-16 101.2 4.8 180 32-231 26-221 (235)
92 PTZ00246 proteasome subunit al 99.2 2.9E-10 6.3E-15 99.6 11.4 92 129-232 125-217 (253)
93 KOG0178|consensus 99.1 4.3E-10 9.2E-15 91.9 8.9 131 86-234 89-220 (249)
94 PF10584 Proteasome_A_N: Prote 98.9 7.9E-10 1.7E-14 58.4 2.2 23 98-120 1-23 (23)
95 KOG0185|consensus 98.8 1.6E-07 3.5E-12 78.2 13.3 81 12-95 12-101 (256)
96 KOG0177|consensus 98.8 1.8E-07 3.8E-12 75.6 11.9 158 38-217 3-170 (200)
97 COG3484 Predicted proteasome-t 98.6 4.3E-07 9.3E-12 74.2 10.6 161 126-289 2-177 (255)
98 COG5405 HslV ATP-dependent pro 98.2 3.1E-05 6.8E-10 61.3 11.0 148 126-288 5-156 (178)
99 COG5405 HslV ATP-dependent pro 94.0 0.041 8.9E-07 43.9 2.4 59 37-95 5-65 (178)
100 KOG3361|consensus 82.9 2.8 6E-05 32.5 4.6 44 241-286 71-114 (157)
101 smart00481 POLIIIAc DNA polyme 67.5 6.3 0.00014 26.4 2.8 32 14-46 6-38 (67)
102 PF07499 RuvA_C: RuvA, C-termi 59.4 16 0.00034 22.9 3.3 34 256-291 12-46 (47)
103 COG3484 Predicted proteasome-t 51.7 12 0.00026 31.3 2.3 59 37-95 2-64 (255)
104 PF07676 PD40: WD40-like Beta 41.3 19 0.0004 21.1 1.5 11 12-22 12-22 (39)
105 COG4831 Roadblock/LC7 domain [ 39.6 13 0.00028 27.1 0.7 13 13-27 17-29 (109)
106 PF02811 PHP: PHP domain; Int 35.7 33 0.00071 27.2 2.6 29 14-43 7-36 (175)
107 PF09894 DUF2121: Uncharacteri 34.9 46 0.00099 27.7 3.2 28 262-291 131-158 (194)
108 PF09894 DUF2121: Uncharacteri 34.8 28 0.0006 29.0 1.9 36 176-214 126-161 (194)
109 COG1754 Uncharacterized C-term 32.3 35 0.00076 30.2 2.2 56 229-288 77-134 (298)
110 PF11216 DUF3012: Protein of u 27.8 1.2E+02 0.0025 17.5 3.1 30 260-291 2-31 (32)
111 COG0279 GmhA Phosphoheptose is 26.3 95 0.0021 25.4 3.6 37 16-52 116-152 (176)
112 PF11211 DUF2997: Protein of u 24.7 1.5E+02 0.0032 18.7 3.6 34 241-274 3-36 (48)
113 PF08140 Cuticle_1: Crustacean 24.3 1E+02 0.0022 18.7 2.6 29 15-51 5-33 (40)
114 PRK07328 histidinol-phosphatas 23.4 79 0.0017 27.6 3.0 31 14-45 10-40 (269)
115 PRK06361 hypothetical protein; 23.1 83 0.0018 26.3 3.0 31 14-46 3-33 (212)
116 TIGR01856 hisJ_fam histidinol 23.1 79 0.0017 27.4 2.9 30 15-45 8-37 (253)
117 PRK09248 putative hydrolase; V 22.9 79 0.0017 27.2 2.8 38 8-46 4-42 (246)
118 COG1387 HIS2 Histidinol phosph 22.6 89 0.0019 26.9 3.1 28 14-43 9-36 (237)
119 COG3490 Uncharacterized protei 22.4 29 0.00062 31.1 -0.0 15 14-31 119-133 (366)
120 PF05113 DUF693: Protein of un 22.3 2.7E+02 0.0058 24.7 5.8 60 225-287 97-157 (314)
No 1
>KOG0176|consensus
Probab=100.00 E-value=4.3e-52 Score=331.63 Aligned_cols=194 Identities=32% Similarity=0.658 Sum_probs=173.1
Q ss_pred CCCCccceeeeeCCCCcchhhhHHHHHHhcCCceEEEEecCCeEEEEEeccCCCCccCCCCcceeEeecCcEEEEEeccc
Q psy8777 5 SSAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVMTGMQ 84 (291)
Q Consensus 5 ~~~~yd~~~~~fsp~g~~~q~eya~~av~~g~~t~vgi~~~~~vv~a~~~~~~~~l~~~~~~~ki~~i~~~~~~~~~G~~ 84 (291)
.++.||+.++||||||||||||||+||++.|+ |+|||++++|||||++||.+++|+.|++++||+.||+||||++||+.
T Consensus 4 trseydrgVNTfSpEGRlfQVEYaieAikLGs-TaIGv~TkEgVvL~vEKritSpLm~p~sveKi~eid~HIgca~SGl~ 82 (241)
T KOG0176|consen 4 TRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGS-TAIGVKTKEGVVLAVEKRITSPLMEPSSVEKIVEIDDHIGCAMSGLI 82 (241)
T ss_pred cHHHhcccccccCCCceeeehhhHHHHHhcCC-ceeeeeccceEEEEEeccccCcccCchhhhhheehhhceeeeccccc
Confidence 36789999999999999999999999999996 99999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhhcccccccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCc
Q psy8777 85 ADSRYQVQRARAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPT 164 (291)
Q Consensus 85 ~D~~~~~~~~~~~yd~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~ 164 (291)
+|+|.+++++|.
T Consensus 83 aDarTlve~arv-------------------------------------------------------------------- 94 (241)
T KOG0176|consen 83 ADARTLVERARV-------------------------------------------------------------------- 94 (241)
T ss_pred cchHHHHHHHHH--------------------------------------------------------------------
Confidence 999988776632
Q ss_pred EEEEeecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCc-----ceeeeeeeeEEEEeCCCCcE
Q psy8777 165 VGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNAE-----MRPLGCSMILISYDENEGPL 239 (291)
Q Consensus 165 ~~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~-----~~p~~~~~li~G~d~~~gp~ 239 (291)
++++|.+.|+++++++.+.+.++++.-.|..... .||||++++++|+|+ .||+
T Consensus 95 ---------------------~~qnh~f~Y~e~i~VEs~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D~-~gpq 152 (241)
T KOG0176|consen 95 ---------------------ETQNHWFTYGEPISVESLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHDE-TGPQ 152 (241)
T ss_pred ---------------------HhhhceeecCCcccHHHHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeeccC-CCce
Confidence 3445555677788888888888888766654422 489999999999996 7999
Q ss_pred EEEECCCCceEeeeEEEecCCchHHHHHHHHhccCCCCCCHHHHHHHHHhhC
Q psy8777 240 IYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKKKTNYTGDETIQLAISCL 291 (291)
Q Consensus 240 Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~t~~eai~l~~~~l 291 (291)
||..||+|+|+++++-|||+|+.-+.+.|++.|++ +|+++||+.++++.|
T Consensus 153 L~h~dPSGtf~~~~AKAIGSgsEga~~~L~~e~~~--~ltL~ea~~~~L~iL 202 (241)
T KOG0176|consen 153 LYHLDPSGTFIRYKAKAIGSGSEGAESSLQEEYHK--DLTLKEAEKIVLKIL 202 (241)
T ss_pred EEEeCCCCceEEecceeccccchHHHHHHHHHHhh--cccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 999999999987643
No 2
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.9e-51 Score=346.93 Aligned_cols=192 Identities=33% Similarity=0.597 Sum_probs=169.3
Q ss_pred CCccceeeeeCCCCcchhhhHHHHHHhcCCceEEEEecCCeEEEEEeccCCCCccCCCCcceeEeecCcEEEEEeccccc
Q psy8777 7 AGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVMTGMQAD 86 (291)
Q Consensus 7 ~~yd~~~~~fsp~g~~~q~eya~~av~~g~~t~vgi~~~~~vv~a~~~~~~~~l~~~~~~~ki~~i~~~~~~~~~G~~~D 86 (291)
.+||+++|+|||||||+|||||++|+++|+ |+|||+++||||||+|+|.++++..+++.+|||+|++|++|+++|+.+|
T Consensus 2 ~~yd~~~t~fsp~Grl~Qveya~~a~~~G~-tvIgik~kdgVvla~d~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D 80 (212)
T cd03751 2 TGYDLSASTFSPDGRVFQVEYANKAVENSG-TAIGIRCKDGVVLAVEKLVTSKLYEPGSNKRIFNVDRHIGIAVAGLLAD 80 (212)
T ss_pred CCccCCCceECCCCcchHHHHHHHHHhcCC-CEEEEEeCCEEEEEEEccccccccCcchhcceeEecCcEEEEEEEChHh
Confidence 689999999999999999999999999997 8999999999999999998776665555566666666666666666666
Q ss_pred hhhhhhhhcccccccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEE
Q psy8777 87 SRYQVQRARAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVG 166 (291)
Q Consensus 87 ~~~~~~~~~~~yd~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~ 166 (291)
++.+++
T Consensus 81 ~~~l~~-------------------------------------------------------------------------- 86 (212)
T cd03751 81 GRHLVS-------------------------------------------------------------------------- 86 (212)
T ss_pred HHHHHH--------------------------------------------------------------------------
Confidence 665544
Q ss_pred EEeecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECCC
Q psy8777 167 CVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPA 246 (291)
Q Consensus 167 ~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~~ 246 (291)
+++.+++.|++.++++++++.+++.|++++|.|+++++.||++++++|+|||+ +||+||.+||+
T Consensus 87 ---------------~~r~~~~~y~~~~~~~~~v~~la~~ls~~~~~~t~~~~~rP~~vs~li~G~D~-~gp~Ly~~D~~ 150 (212)
T cd03751 87 ---------------RAREEAENYRDNYGTPIPVKVLADRVAMYMHAYTLYSSVRPFGCSVLLGGYDS-DGPQLYMIEPS 150 (212)
T ss_pred ---------------HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccCCCcCCceEEEEEEEEeC-CcCEEEEECCC
Confidence 44445567777888999999999999999999999988999999999999996 68999999999
Q ss_pred CceEeeeEEEecCCchHHHHHHHHhccCCCCCCHHHHHHHHHhhC
Q psy8777 247 GYYCSFKAVSVGVKTTEANSYLEKKFKKKTNYTGDETIQLAISCL 291 (291)
Q Consensus 247 G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~t~~eai~l~~~~l 291 (291)
|++.+++++|+|+|+.+++++||++|++ +||+|||+++++++|
T Consensus 151 Gs~~~~~~~a~G~g~~~a~~~Lek~~~~--dms~eeai~l~~~~L 193 (212)
T cd03751 151 GVSYGYFGCAIGKGKQAAKTELEKLKFS--ELTCREAVKEAAKII 193 (212)
T ss_pred CCEEeeEEEEECCCCHHHHHHHHHhccC--CCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999 999999999999875
No 3
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.6e-50 Score=345.31 Aligned_cols=195 Identities=69% Similarity=1.089 Sum_probs=167.6
Q ss_pred CccceeeeeCCCCcchhhhHHHHHHhcCCceEEEEecCCeEEEEEeccCCCCccCCCCcceeEeecCcEEEEEeccccch
Q psy8777 8 GFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVMTGMQADS 87 (291)
Q Consensus 8 ~yd~~~~~fsp~g~~~q~eya~~av~~g~~t~vgi~~~~~vv~a~~~~~~~~l~~~~~~~ki~~i~~~~~~~~~G~~~D~ 87 (291)
+||+++|+|||||||+|||||+||++++|+|+|||+++||||||+|+|.+++++.++..+|||+|++|++|++||+.+
T Consensus 1 ~yd~~~~~fsp~Grl~Qveya~~a~~~~g~t~igi~~~d~Vvlaad~r~~~~~i~~~~~~Ki~~I~~~i~~~~sG~~~-- 78 (215)
T cd03754 1 GFDRHITIFSPEGRLYQVEYAFKAVKNAGLTSVAVRGKDCAVVVTQKKVPDKLIDPSTVTHLFRITDEIGCVMTGMIA-- 78 (215)
T ss_pred CCCCCCeeECCCCeEeHHHhHHHHHhcCCccEEEEEeCCEEEEEEeccccccccCCcccCceEEEcCCEEEEEEechh--
Confidence 699999999999999999999999998666999999999999999999877655444445555555555555555544
Q ss_pred hhhhhhhcccccccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEE
Q psy8777 88 RYQVQRARAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGC 167 (291)
Q Consensus 88 ~~~~~~~~~~yd~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~ 167 (291)
T Consensus 79 -------------------------------------------------------------------------------- 78 (215)
T cd03754 79 -------------------------------------------------------------------------------- 78 (215)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECCCC
Q psy8777 168 VMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAG 247 (291)
Q Consensus 168 ~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~~G 247 (291)
|++.+.++++.++..|+++++++++++.+++.++.++|.|+++.+.||++++++|+|+|+++||+||.+||+|
T Consensus 79 -------D~~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D~~~gp~Ly~~Dp~G 151 (215)
T cd03754 79 -------DSRSQVQRARYEAAEFKYKYGYEMPVDVLAKRIADINQVYTQHAYMRPLGVSMILIGIDEELGPQLYKCDPAG 151 (215)
T ss_pred -------hHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhCCCCCcCCeeEEEEEEEeCCCCeEEEEEcCCc
Confidence 4555555556677788889999999999999999999999999889999999999999976789999999999
Q ss_pred ceEeeeEEEecCCchHHHHHHHHhccCCCCC--CHHHHHHHHHhhC
Q psy8777 248 YYCSFKAVSVGVKTTEANSYLEKKFKKKTNY--TGDETIQLAISCL 291 (291)
Q Consensus 248 ~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~--t~~eai~l~~~~l 291 (291)
++.+++++|+|+|+.+++++||++|++..+| |.|||++++++||
T Consensus 152 s~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~s~eeai~l~~~al 197 (215)
T cd03754 152 YFAGYKATAAGVKEQEATNFLEKKLKKKPDLIESYEETVELAISCL 197 (215)
T ss_pred cEEeEEEEEECCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999994447 9999999999985
No 4
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.3e-50 Score=347.42 Aligned_cols=190 Identities=38% Similarity=0.695 Sum_probs=170.2
Q ss_pred ccceeeeeCCCCcchhhhHHHHHHhcCCceEEEEecCCeEEEEEeccCCCCccCCCCcceeEeecCcEEEEEeccccchh
Q psy8777 9 FDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVMTGMQADSR 88 (291)
Q Consensus 9 yd~~~~~fsp~g~~~q~eya~~av~~g~~t~vgi~~~~~vv~a~~~~~~~~l~~~~~~~ki~~i~~~~~~~~~G~~~D~~ 88 (291)
||+++|+|||||||+|||||++|+++|+ |+|||+++||||||+|+|.++++..+++.+||++|++|++|+++|+.+|++
T Consensus 1 yd~~~t~fsp~Grl~QveyA~~av~~G~-t~igik~~dgVvlaad~~~~~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~ 79 (227)
T cd03750 1 YSFSLTTFSPSGKLVQIEYALAAVSSGA-PSVGIKAANGVVLATEKKVPSPLIDESSVHKVEQITPHIGMVYSGMGPDFR 79 (227)
T ss_pred CCCCCceECCCCeEhHHHHHHHHHHcCC-CEEEEEeCCEEEEEEeecCCccccCCCCcceEEEEcCCEEEEEeEcHHhHH
Confidence 8999999999999999999999999995 999999999999999999887777666667777777777777777666666
Q ss_pred hhhhhhcccccccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEE
Q psy8777 89 YQVQRARAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCV 168 (291)
Q Consensus 89 ~~~~~~~~~yd~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~ 168 (291)
.+++.
T Consensus 80 ~l~~~--------------------------------------------------------------------------- 84 (227)
T cd03750 80 VLVKK--------------------------------------------------------------------------- 84 (227)
T ss_pred HHHHH---------------------------------------------------------------------------
Confidence 55444
Q ss_pred eecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECCCCc
Q psy8777 169 MTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGY 248 (291)
Q Consensus 169 ~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~~G~ 248 (291)
++.+++.|++.++.+++++.+++.|++++|.|+++++.||++++++|+|||+ .||+||.+||+|+
T Consensus 85 --------------~r~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rP~~v~~li~G~D~-~g~~Ly~~d~~G~ 149 (227)
T cd03750 85 --------------ARKIAQQYYLVYGEPIPVSQLVREIASVMQEYTQSGGVRPFGVSLLIAGWDE-GGPYLYQVDPSGS 149 (227)
T ss_pred --------------HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCCCChheEEEEEEEeC-CCCEEEEECCCCC
Confidence 4445567778888999999999999999999999988999999999999996 5899999999999
Q ss_pred eEeeeEEEecCCchHHHHHHHHhccCCCCCCHHHHHHHHHhhC
Q psy8777 249 YCSFKAVSVGVKTTEANSYLEKKFKKKTNYTGDETIQLAISCL 291 (291)
Q Consensus 249 ~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~t~~eai~l~~~~l 291 (291)
+.+++++|+|+|+.+++++||++|++ +||++||++++++||
T Consensus 150 ~~~~~~~a~G~g~~~~~~~Le~~~~~--~ms~eeai~l~~~~l 190 (227)
T cd03750 150 YFTWKATAIGKNYSNAKTFLEKRYNE--DLELEDAIHTAILTL 190 (227)
T ss_pred EEeeeEEEECCCCHHHHHHHHhhccC--CCCHHHHHHHHHHHH
Confidence 99999999999999999999999999 999999999999986
No 5
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=9.9e-50 Score=340.33 Aligned_cols=193 Identities=36% Similarity=0.674 Sum_probs=168.1
Q ss_pred CCccceeeeeCCCCcchhhhHHHHHHhcCCceEEEEecCCeEEEEEeccCCCCccCCC-CcceeEeecCcEEEEEecccc
Q psy8777 7 AGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPK-TVTNLYSLTPTVGCVMTGMQA 85 (291)
Q Consensus 7 ~~yd~~~~~fsp~g~~~q~eya~~av~~g~~t~vgi~~~~~vv~a~~~~~~~~l~~~~-~~~ki~~i~~~~~~~~~G~~~ 85 (291)
++||+++|+|||||||+|||||+||+++|+ |+|||+++||||||+|+|.+++++.++ +.+|||+|++|++|++||+.+
T Consensus 1 ~~yd~~~~~fsp~Grl~Qveya~~a~~~G~-t~igi~~~dgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~ 79 (213)
T cd03752 1 RRYDSRTTIFSPEGRLYQVEYAMEAISHAG-TCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKIDDHIACAVAGITS 79 (213)
T ss_pred CCcCCCCceECCCCEEhHHHhHHHHHhcCC-CEEEEEeCCEEEEEEEeccCCcccCCCcCcceEEEecCCEEEEEecChH
Confidence 479999999999999999999999999996 999999999999999999887766543 445666666665555555555
Q ss_pred chhhhhhhhcccccccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcE
Q psy8777 86 DSRYQVQRARAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTV 165 (291)
Q Consensus 86 D~~~~~~~~~~~yd~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~ 165 (291)
|++.+++
T Consensus 80 D~~~l~~------------------------------------------------------------------------- 86 (213)
T cd03752 80 DANILIN------------------------------------------------------------------------- 86 (213)
T ss_pred hHHHHHH-------------------------------------------------------------------------
Confidence 5555544
Q ss_pred EEEeecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECC
Q psy8777 166 GCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDP 245 (291)
Q Consensus 166 ~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~ 245 (291)
+++.+++.|+++++++++++.+++.|+..+|.|++.++.|||+++++|+|||++.||+||.+||
T Consensus 87 ----------------~~r~~~~~~~~~~~~~i~v~~la~~ls~~~~~~t~~~~~RP~~v~~li~G~D~~~g~~ly~~d~ 150 (213)
T cd03752 87 ----------------YARLIAQRYLYSYQEPIPVEQLVQRLCDIKQGYTQYGGLRPFGVSFLYAGWDKHYGFQLYQSDP 150 (213)
T ss_pred ----------------HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCcccceeEEEEEEEeCCCCCEEEEECC
Confidence 4444555777788999999999999999999999988999999999999999767899999999
Q ss_pred CCceEeeeEEEecCCchHHHHHHHHhccCCCCCCHHHHHHHHHhhC
Q psy8777 246 AGYYCSFKAVSVGVKTTEANSYLEKKFKKKTNYTGDETIQLAISCL 291 (291)
Q Consensus 246 ~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~t~~eai~l~~~~l 291 (291)
+|++.+++++|+|+++.+++++||++|++ +||+|||++++++||
T Consensus 151 ~G~~~~~~~~a~G~gs~~~~~~Le~~y~~--~ms~eea~~l~~~al 194 (213)
T cd03752 151 SGNYSGWKATAIGNNNQAAQSLLKQDYKD--DMTLEEALALAVKVL 194 (213)
T ss_pred CCCeeeeeEEEECCCcHHHHHHHHHhccC--CCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999 999999999999985
No 6
>KOG0182|consensus
Probab=100.00 E-value=2.9e-50 Score=324.49 Aligned_cols=202 Identities=69% Similarity=1.045 Sum_probs=185.5
Q ss_pred CCCCCCCCccceeeeeCCCCcchhhhHHHHHHhcCCceEEEEecCCeEEEEEeccCCCCccCCCCcceeEeecCcEEEEE
Q psy8777 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVM 80 (291)
Q Consensus 1 ~~~~~~~~yd~~~~~fsp~g~~~q~eya~~av~~g~~t~vgi~~~~~vv~a~~~~~~~~l~~~~~~~ki~~i~~~~~~~~ 80 (291)
|||+|+++||+.+|+|||||||+|||||+||++|+|.|+|++|++|++|++++|+.+++|.++++++++|+|+++|||++
T Consensus 1 ~s~gs~agfDrhitIFspeGrLyQVEYafkAin~~gltsVavrgkDcavvvsqKkvpDKLld~~tvt~~f~itk~ig~v~ 80 (246)
T KOG0182|consen 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQAGLTSVAVRGKDCAVVVTQKKVPDKLLDSSTVTHLFRITKKIGCVI 80 (246)
T ss_pred CCCCCcCCccceEEEECCCceEEeeehHHHHhhcCCCceEEEcCCceEEEEecccCcccccccccceeEEEeeccceEEE
Confidence 89999999999999999999999999999999998899999999999999999999999999887888888888777777
Q ss_pred eccccchhhhhhhhcccccccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEE
Q psy8777 81 TGMQADSRYQVQRARAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYS 160 (291)
Q Consensus 81 ~G~~~D~~~~~~~~~~~yd~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~ 160 (291)
+|+.+|+|.+++
T Consensus 81 tG~~aDar~~v~-------------------------------------------------------------------- 92 (246)
T KOG0182|consen 81 TGMIADARSQVQ-------------------------------------------------------------------- 92 (246)
T ss_pred ecCCcchHHHHH--------------------------------------------------------------------
Confidence 777777765444
Q ss_pred ecCcEEEEeecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEE
Q psy8777 161 LTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLI 240 (291)
Q Consensus 161 i~~~~~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~L 240 (291)
+++.++.+++|+||.+||++.|++.++++.|.|+|+..+||+||.+.++|+|++.||.+
T Consensus 93 ---------------------rar~eAa~~~yk~Gyemp~DiL~k~~Ad~~QvytQ~a~mRplg~~~~~i~~D~E~gP~v 151 (246)
T KOG0182|consen 93 ---------------------RARYEAAEFRYKYGYEMPCDILAKRMADKSQVYTQNAAMRPLGVAATLIGVDEERGPSV 151 (246)
T ss_pred ---------------------HHHHHHHhhhhhcCCCCCHHHHHHHHhhHHHHHhhhhhhcccceeEEEEEeccccCcce
Confidence 44446667778899999999999999999999999999999999999999999999999
Q ss_pred EEECCCCceEeeeEEEecCCchHHHHHHHHhccCCCCCCHHHHHHHHHhhC
Q psy8777 241 YKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKKKTNYTGDETIQLAISCL 291 (291)
Q Consensus 241 y~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~t~~eai~l~~~~l 291 (291)
|.+||.|-+..+++++.|-....+..+||++||++.++|.+|++++++.||
T Consensus 152 Yk~DpAGyy~g~kAtaaG~Kq~e~tsfLEKk~Kk~~~~t~~e~ve~ai~al 202 (246)
T KOG0182|consen 152 YKTDPAGYYYGFKATAAGVKQQEATSFLEKKYKKDIDLTFEETVETAISAL 202 (246)
T ss_pred EeecCccccccceeeecccchhhHHHHHHHhhccCccchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999965688999999999875
No 7
>PTZ00246 proteasome subunit alpha; Provisional
Probab=100.00 E-value=6.2e-49 Score=343.63 Aligned_cols=193 Identities=35% Similarity=0.654 Sum_probs=168.0
Q ss_pred CCccceeeeeCCCCcchhhhHHHHHHhcCCceEEEEecCCeEEEEEeccCCCCccCCC-CcceeEeecCcEEEEEecccc
Q psy8777 7 AGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPK-TVTNLYSLTPTVGCVMTGMQA 85 (291)
Q Consensus 7 ~~yd~~~~~fsp~g~~~q~eya~~av~~g~~t~vgi~~~~~vv~a~~~~~~~~l~~~~-~~~ki~~i~~~~~~~~~G~~~ 85 (291)
++||+++|+|||||||+|||||+|||++|+ |+|||+++||||||+|+|.+++++.++ +.+|||+|++|++|+++|+.+
T Consensus 3 ~~yd~~~~~fsp~Grl~QvEYA~~av~~g~-t~Igik~~dgVvlaad~r~s~~~~~~~~~~~KI~~I~~~i~~~~sG~~~ 81 (253)
T PTZ00246 3 RRYDSRTTTFSPEGRLYQVEYALEAINNAS-LTVGILCKEGVILGADKPISSKLLDPGKINEKIYKIDSHIFCAVAGLTA 81 (253)
T ss_pred CccCCCCceECCCCEEhHHHHHHHHHHhCC-CEEEEEECCEEEEEEecCCCCcCccCCCCcccEEEecCCEEEEEEEcHH
Confidence 489999999999999999999999999996 999999999999999999887766553 245555555555555555555
Q ss_pred chhhhhhhhcccccccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcE
Q psy8777 86 DSRYQVQRARAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTV 165 (291)
Q Consensus 86 D~~~~~~~~~~~yd~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~ 165 (291)
|++
T Consensus 82 D~~----------------------------------------------------------------------------- 84 (253)
T PTZ00246 82 DAN----------------------------------------------------------------------------- 84 (253)
T ss_pred HHH-----------------------------------------------------------------------------
Confidence 554
Q ss_pred EEEeecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECC
Q psy8777 166 GCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDP 245 (291)
Q Consensus 166 ~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~ 245 (291)
.+.+.++.++..|++.++.+++++.+++.++..+|.|+++++.||++++++|+|||++.||+||.+||
T Consensus 85 ------------~l~~~~r~~~~~~~~~~~~~~~v~~l~~~l~~~~q~~~~~~~~rP~~v~~li~G~D~~~gp~Ly~~D~ 152 (253)
T PTZ00246 85 ------------ILINQCRLYAQRYRYTYGEPQPVEQLVVQICDLKQSYTQFGGLRPFGVSFLFAGYDENLGYQLYHTDP 152 (253)
T ss_pred ------------HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccCCEEEEEEEEeCCCCcEEEEECC
Confidence 44455555666777788889999999999999999999999999999999999999657899999999
Q ss_pred CCceEeeeEEEecCCchHHHHHHHHhccCCCCCCHHHHHHHHHhhC
Q psy8777 246 AGYYCSFKAVSVGVKTTEANSYLEKKFKKKTNYTGDETIQLAISCL 291 (291)
Q Consensus 246 ~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~t~~eai~l~~~~l 291 (291)
+|++.+++++|+|+|+.+++++||++|++ +|++|||++++++||
T Consensus 153 ~Gs~~~~~~~a~G~gs~~~~~~Le~~~~~--~ms~eeai~l~~~al 196 (253)
T PTZ00246 153 SGNYSGWKATAIGQNNQTAQSILKQEWKE--DLTLEQGLLLAAKVL 196 (253)
T ss_pred CCCEecceEEEECCCcHHHHHHHHHhccC--CCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999 999999999999986
No 8
>KOG0183|consensus
Probab=100.00 E-value=5.2e-50 Score=323.56 Aligned_cols=195 Identities=35% Similarity=0.606 Sum_probs=178.3
Q ss_pred CCccceeeeeCCCCcchhhhHHHHHHhcCCceEEEEecCCeEEEEEeccCCCCccCCCCcceeEeecCcEEEEEeccccc
Q psy8777 7 AGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVMTGMQAD 86 (291)
Q Consensus 7 ~~yd~~~~~fsp~g~~~q~eya~~av~~g~~t~vgi~~~~~vv~a~~~~~~~~l~~~~~~~ki~~i~~~~~~~~~G~~~D 86 (291)
++||+.+|+|||||+|||||||++||++|+ |+||++++|+|||+.+||...+|++.++..||..+|+|+++++||+.||
T Consensus 2 srydraltvFSPDGhL~QVEYAqEAvrkGs-taVgvrg~~~vvlgvEkkSv~~Lq~~r~~rkI~~ld~hV~mafaGl~aD 80 (249)
T KOG0183|consen 2 SRYDRALTVFSPDGHLFQVEYAQEAVRKGS-TAVGVRGNNCVVLGVEKKSVPKLQDERTVRKISMLDDHVVMAFAGLTAD 80 (249)
T ss_pred CccccceEEECCCCCEEeeHhHHHHHhcCc-eEEEeccCceEEEEEeecchhhhhhhhhhhhheeecceeeEEecCCCcc
Confidence 589999999999999999999999999996 9999999999999999999999998888888888888888888888888
Q ss_pred hhhhhhhhcccccccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEE
Q psy8777 87 SRYQVQRARAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVG 166 (291)
Q Consensus 87 ~~~~~~~~~~~yd~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~ 166 (291)
+|.+++.
T Consensus 81 Arilinr------------------------------------------------------------------------- 87 (249)
T KOG0183|consen 81 ARILINR------------------------------------------------------------------------- 87 (249)
T ss_pred ceeehhh-------------------------------------------------------------------------
Confidence 8755443
Q ss_pred EEeecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECCC
Q psy8777 167 CVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPA 246 (291)
Q Consensus 167 ~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~~ 246 (291)
++.|+++|++....+++++.+.++|+.+.|.||+..+.||||++.+|+|+|+++.|+||.+||+
T Consensus 88 ----------------ArvecqShrlt~edpvtveyitRyiA~~kQrYTqs~grRPFGvs~Li~GfD~~g~p~lyqtePs 151 (249)
T KOG0183|consen 88 ----------------ARVECQSHRLTLEDPVTVEYITRYIAGLKQRYTQSNGRRPFGVSTLIGGFDPDGTPRLYQTEPS 151 (249)
T ss_pred ----------------HhHhhhhhhcccCCCcHHHHHHHHHHHhhhhhhccCCcccccceEEEEeeCCCCCeeeEeeCCC
Confidence 3446677777778899999999999999999999999999999999999999767999999999
Q ss_pred CceEeeeEEEecCCchHHHHHHHHhccCCCCCCHHHHHHHHHhhC
Q psy8777 247 GYYCSFKAVSVGVKTTEANSYLEKKFKKKTNYTGDETIQLAISCL 291 (291)
Q Consensus 247 G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~t~~eai~l~~~~l 291 (291)
|.|.+|++.|+|.+++.+..+||++|++..-.+..|+++|++++|
T Consensus 152 G~f~ewka~aiGr~sk~VrEflEK~y~e~~~~~~~~~ikL~ir~L 196 (249)
T KOG0183|consen 152 GIFSEWKANAIGRSSKTVREFLEKNYKEEAIATEGETIKLAIRAL 196 (249)
T ss_pred cchhhhhccccccccHHHHHHHHHhcccccccccccHHHHHHHHH
Confidence 999999999999999999999999999955589999999999875
No 9
>KOG0184|consensus
Probab=100.00 E-value=3e-49 Score=320.75 Aligned_cols=195 Identities=35% Similarity=0.587 Sum_probs=177.0
Q ss_pred CCCCCccceeeeeCCCCcchhhhHHHHHHhcCCceEEEEecCCeEEEEEeccCCCCccCCCCcceeEeecCcEEEEEecc
Q psy8777 4 GSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVMTGM 83 (291)
Q Consensus 4 ~~~~~yd~~~~~fsp~g~~~q~eya~~av~~g~~t~vgi~~~~~vv~a~~~~~~~~l~~~~~~~ki~~i~~~~~~~~~G~ 83 (291)
+.+.+||++.++||||||+||||||+|||+++| |+|||||+|||||++||..+++|+.|..++|||+|++|||++++|+
T Consensus 3 sIGtGyDls~s~fSpdGrvfQveYA~KAven~~-T~IGIk~kdGVVl~vEKli~SkLy~p~sn~ri~~V~r~iG~avaGl 81 (254)
T KOG0184|consen 3 SIGTGYDLSASTFSPDGRVFQVEYAQKAVENSG-TCIGIKCKDGVVLAVEKLITSKLYEPGSNERIFSVDRHIGMAVAGL 81 (254)
T ss_pred cccccccccceeeCCCCceehHHHHHHHHhcCC-cEEEEecCCeEEEEEeeeecccccccCCCCceEeecccccEEEecc
Confidence 458999999999999999999999999999997 9999999999999999999999999988888888888888888888
Q ss_pred ccchhhhhhhhcccccccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecC
Q psy8777 84 QADSRYQVQRARAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTP 163 (291)
Q Consensus 84 ~~D~~~~~~~~~~~yd~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~ 163 (291)
.+|.+.+++++
T Consensus 82 ~~Dg~~l~~~a--------------------------------------------------------------------- 92 (254)
T KOG0184|consen 82 IPDGRHLVNRA--------------------------------------------------------------------- 92 (254)
T ss_pred ccchHHHHHHH---------------------------------------------------------------------
Confidence 88887665544
Q ss_pred cEEEEeecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEE
Q psy8777 164 TVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKT 243 (291)
Q Consensus 164 ~~~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~ 243 (291)
+.|+.+|+-.|+.++|...++..++.+.|.||.++..||||++.++++||+ +||+||.+
T Consensus 93 --------------------r~ea~~~~~~y~~piP~~~la~rva~yvh~~Tly~~vRpfG~~~~~~~yd~-~g~~Lymi 151 (254)
T KOG0184|consen 93 --------------------RDEAASWRKNYGDPIPGKHLADRVADYVHAFTLYSSVRPFGASTILGSYDD-EGPQLYMI 151 (254)
T ss_pred --------------------HHHHHHHHHhcCCCCchHHHHHHHHhhhheeehhhccccccceEEEEEEeC-CCceEEEE
Confidence 335566666788899999999999999999999999999999999999995 79999999
Q ss_pred CCCCceEeeeEEEecCCchHHHHHHHHhccCCCCCCHHHHHHHHHhhC
Q psy8777 244 DPAGYYCSFKAVSVGVKTTEANSYLEKKFKKKTNYTGDETIQLAISCL 291 (291)
Q Consensus 244 d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~t~~eai~l~~~~l 291 (291)
||+|..+.++++|+|.|.+.+++.|||.--+ .|+.+|+++.+.+.|
T Consensus 152 epSG~~~~Y~~aaiGKgrq~aKtElEKL~~~--~mt~~e~VkeaakIi 197 (254)
T KOG0184|consen 152 EPSGSSYGYKGAAIGKGRQAAKTELEKLKID--EMTCKELVKEAAKII 197 (254)
T ss_pred cCCCCccceeeeeccchhHHHHHHHHhcccc--cccHHHHHHHHHhee
Confidence 9999999999999999999999999999766 899999999887653
No 10
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.7e-48 Score=330.79 Aligned_cols=190 Identities=31% Similarity=0.629 Sum_probs=162.8
Q ss_pred ccceeeeeCCCCcchhhhHHHHHHhcCCceEEEEecCCeEEEEEeccCCCCccCCCCcceeEeecCcEEEEEeccccchh
Q psy8777 9 FDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVMTGMQADSR 88 (291)
Q Consensus 9 yd~~~~~fsp~g~~~q~eya~~av~~g~~t~vgi~~~~~vv~a~~~~~~~~l~~~~~~~ki~~i~~~~~~~~~G~~~D~~ 88 (291)
||+++|+|||||||+|||||++|+++|+ |+|||+++||||||+|+|.++++.. ..+|||+|++|++|++||+.+|++
T Consensus 1 yd~~~t~fsp~Grl~Qveya~~av~~G~-t~IgIk~~dgVvlaad~r~~~~l~~--~~~KI~~I~~~i~~~~sG~~~D~~ 77 (211)
T cd03749 1 YDTDVTTWSPQGRLFQVEYAMEAVKQGS-ATVGLKSKTHAVLVALKRATSELSS--YQKKIFKVDDHIGIAIAGLTADAR 77 (211)
T ss_pred CCCCCceECCCCeEeHHHHHHHHHhcCC-CEEEEEeCCEEEEEEeccCccccCC--ccccEEEeCCCEEEEEEeChHhHH
Confidence 8999999999999999999999999996 9999999999999999987655432 235555555555555555555555
Q ss_pred hhhhhhcccccccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEE
Q psy8777 89 YQVQRARAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCV 168 (291)
Q Consensus 89 ~~~~~~~~~yd~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~ 168 (291)
.+
T Consensus 78 ~l------------------------------------------------------------------------------ 79 (211)
T cd03749 78 VL------------------------------------------------------------------------------ 79 (211)
T ss_pred HH------------------------------------------------------------------------------
Confidence 44
Q ss_pred eecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECCCCc
Q psy8777 169 MTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGY 248 (291)
Q Consensus 169 ~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~~G~ 248 (291)
.++++.+++.|+++++++++++.+++.++.++|.|+++.+.||++++++|+|||+ .||+||.+||+|+
T Consensus 80 -----------~~~~r~~~~~~~~~~~~~~~v~~la~~is~~~~~~t~~~~~rP~~v~~ii~G~D~-~gp~Ly~~Dp~G~ 147 (211)
T cd03749 80 -----------SRYMRQECLNYRFVYDSPIPVSRLVSKVAEKAQINTQRYGRRPYGVGLLIAGYDE-SGPHLFQTCPSGN 147 (211)
T ss_pred -----------HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEEcC-CCCeEEEECCCcC
Confidence 4444455568888999999999999999999999999888999999999999996 6899999999999
Q ss_pred eEeeeEEEecCCchHHHHHHHHhccCCCCCCHHHHHHHHHhhC
Q psy8777 249 YCSFKAVSVGVKTTEANSYLEKKFKKKTNYTGDETIQLAISCL 291 (291)
Q Consensus 249 ~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~t~~eai~l~~~~l 291 (291)
+.+++++|+|+|+..++++||++|++..+|++|||+++++++|
T Consensus 148 ~~~~~~~a~G~g~~~a~~~Le~~~~~~~~ms~ee~i~~~~~~l 190 (211)
T cd03749 148 YFEYKATSIGARSQSARTYLERHFEEFEDCSLEELIKHALRAL 190 (211)
T ss_pred EeeeeEEEECCCcHHHHHHHHHhhccccCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999434899999999999875
No 11
>PRK03996 proteasome subunit alpha; Provisional
Probab=100.00 E-value=1.9e-48 Score=338.40 Aligned_cols=195 Identities=36% Similarity=0.701 Sum_probs=173.8
Q ss_pred CCCCCccceeeeeCCCCcchhhhHHHHHHhcCCceEEEEecCCeEEEEEeccCCCCccCCCCcceeEeecCcEEEEEecc
Q psy8777 4 GSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVMTGM 83 (291)
Q Consensus 4 ~~~~~yd~~~~~fsp~g~~~q~eya~~av~~g~~t~vgi~~~~~vv~a~~~~~~~~l~~~~~~~ki~~i~~~~~~~~~G~ 83 (291)
+++++||+++++|||||||+|||||+||+++|+ |+|||+++||||||+|+|.++++..+++.+||+.|++|++|++||+
T Consensus 5 ~~~~~y~~~~~~fsp~Gr~~Q~eya~~av~~G~-t~igik~~dgVvlaad~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~ 83 (241)
T PRK03996 5 PQQMGYDRAITIFSPDGRLYQVEYAREAVKRGT-TAVGVKTKDGVVLAVDKRITSPLIEPSSIEKIFKIDDHIGAASAGL 83 (241)
T ss_pred ccccccCCCCceECCCCeEhHHHHHHHHHHhCC-CEEEEEeCCEEEEEEeccCCCcccCCCccceEEEEcCCEEEEEccc
Confidence 468999999999999999999999999999995 9999999999999999999877776666677777777777777777
Q ss_pred ccchhhhhhhhcccccccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecC
Q psy8777 84 QADSRYQVQRARAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTP 163 (291)
Q Consensus 84 ~~D~~~~~~~~~~~yd~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~ 163 (291)
.+|++.++++++
T Consensus 84 ~~D~~~l~~~~~-------------------------------------------------------------------- 95 (241)
T PRK03996 84 VADARVLIDRAR-------------------------------------------------------------------- 95 (241)
T ss_pred HHHHHHHHHHHH--------------------------------------------------------------------
Confidence 777776665542
Q ss_pred cEEEEeecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEE
Q psy8777 164 TVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKT 243 (291)
Q Consensus 164 ~~~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~ 243 (291)
.++..+++.++.+++++.+++.++.++|.|+++++.||++++++|+|||+ .||+||.+
T Consensus 96 ---------------------~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~~~~ilaG~d~-~gp~Ly~i 153 (241)
T PRK03996 96 ---------------------VEAQINRLTYGEPIGVETLTKKICDHKQQYTQHGGVRPFGVALLIAGVDD-GGPRLFET 153 (241)
T ss_pred ---------------------HHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccchheEEEEEEEeC-CcCEEEEE
Confidence 23344455678899999999999999999999888999999999999997 68999999
Q ss_pred CCCCceEeeeEEEecCCchHHHHHHHHhccCCCCCCHHHHHHHHHhhC
Q psy8777 244 DPAGYYCSFKAVSVGVKTTEANSYLEKKFKKKTNYTGDETIQLAISCL 291 (291)
Q Consensus 244 d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~t~~eai~l~~~~l 291 (291)
||+|++.+++++|+|.|+..++++||+.|++ +|+++||++++++||
T Consensus 154 d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~--~~s~eeai~l~~~al 199 (241)
T PRK03996 154 DPSGAYLEYKATAIGAGRDTVMEFLEKNYKE--DLSLEEAIELALKAL 199 (241)
T ss_pred CCCCCeecceEEEECCCcHHHHHHHHHhccc--CCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 999999999999985
No 12
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-47 Score=330.12 Aligned_cols=191 Identities=38% Similarity=0.722 Sum_probs=169.4
Q ss_pred CCccceeeeeCCCCcchhhhHHHHHHhcCCceEEEEecCCeEEEEEeccCCCCccCCCC-cceeEeecCcEEEEEecccc
Q psy8777 7 AGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKT-VTNLYSLTPTVGCVMTGMQA 85 (291)
Q Consensus 7 ~~yd~~~~~fsp~g~~~q~eya~~av~~g~~t~vgi~~~~~vv~a~~~~~~~~l~~~~~-~~ki~~i~~~~~~~~~G~~~ 85 (291)
.+||+.+++||||||++|+|||++|++++|+|+|||+++||||||+|||.+++++..+. .+|||+|+|||+|++||+.+
T Consensus 1 ~~~~~~~~~fsp~g~l~q~e~a~~a~~~~gtT~vgik~~dgVVlaadkr~t~~~~~~~~~~~Ki~~I~d~i~~~~sG~~a 80 (236)
T COG0638 1 AGYDRAITIFSPEGRLFQVEYALEAVKRGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAA 80 (236)
T ss_pred CCCcCcceeECCCCchHHHHHHHHHHHcCCceEEEEEecCEEEEEEeccCCCCceecccccceEEEecCCEEEEeccCcH
Confidence 47999999999999999999999999999889999999999999999999998665533 56776666666666666666
Q ss_pred chhhhhhhhcccccccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcE
Q psy8777 86 DSRYQVQRARAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTV 165 (291)
Q Consensus 86 D~~~~~~~~~~~yd~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~ 165 (291)
|+|.+++
T Consensus 81 Da~~lv~------------------------------------------------------------------------- 87 (236)
T COG0638 81 DAQVLVR------------------------------------------------------------------------- 87 (236)
T ss_pred hHHHHHH-------------------------------------------------------------------------
Confidence 6665544
Q ss_pred EEEeecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECC
Q psy8777 166 GCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDP 245 (291)
Q Consensus 166 ~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~ 245 (291)
+++.+++.|++.++++++++.+++.+++++|.|+++ .|||++.++|+|+|+ ++|+||++||
T Consensus 88 ----------------~~r~~a~~~~~~~~~~i~v~~la~~ls~~l~~~~~~--~rP~gv~~iiaG~d~-~~p~Ly~~Dp 148 (236)
T COG0638 88 ----------------YARAEAQLYRLRYGEPISVEALAKLLSNILQEYTQS--GRPYGVSLLVAGVDD-GGPRLYSTDP 148 (236)
T ss_pred ----------------HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccC--cccceEEEEEEEEcC-CCCeEEEECC
Confidence 444467777888899999999999999999999876 799999999999998 8899999999
Q ss_pred CCceEeeeEEEecCCchHHHHHHHHhccCCCCCCHHHHHHHHHhhC
Q psy8777 246 AGYYCSFKAVSVGVKTTEANSYLEKKFKKKTNYTGDETIQLAISCL 291 (291)
Q Consensus 246 ~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~t~~eai~l~~~~l 291 (291)
+|++.+++++|+|+|++.++++||++|++ +|++|||++++++||
T Consensus 149 ~G~~~~~~~~a~Gsgs~~a~~~Le~~y~~--~m~~eeai~la~~al 192 (236)
T COG0638 149 SGSYNEYKATAIGSGSQFAYGFLEKEYRE--DLSLEEAIELAVKAL 192 (236)
T ss_pred CCceeecCEEEEcCCcHHHHHHHHhhccC--CCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999 999999999999986
No 13
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.5e-46 Score=315.91 Aligned_cols=191 Identities=39% Similarity=0.683 Sum_probs=183.7
Q ss_pred ccccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEEeecccccHH
Q psy8777 98 FDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVMTGMQADSR 177 (291)
Q Consensus 98 yd~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~~sG~~~D~~ 177 (291)
||+++++|+|+||++|+|||.+++.+|+ +++|++++++||+++|++....++.++..+||++|+++++++++|+.+|.+
T Consensus 1 ~d~~~~~fsp~Gr~~Qveya~~av~~G~-t~Igik~~dgVvlaad~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~ 79 (207)
T cd03755 1 YDRAITVFSPDGHLFQVEYAQEAVRKGT-TAVGVRGKDCVVLGVEKKSVAKLQDPRTVRKICMLDDHVCLAFAGLTADAR 79 (207)
T ss_pred CCCCCceECCCCeEeHHHHHHHHHHcCC-CEEEEEeCCEEEEEEecCCCCcccCCCccCcEEEECCCEEEEEecchhhHH
Confidence 7899999999999999999999999998 999999999999999998877777666789999999999999999999999
Q ss_pred HHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECCCCceEeeeEEEe
Q psy8777 178 YQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSV 257 (291)
Q Consensus 178 ~~~~~~~~e~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~~G~~~~~~~~a~ 257 (291)
.+.++++.+++.|+++++++++++.+++.++.++|.|+++++.||++++++|+|||++++|+||.+||+|++.+++++|+
T Consensus 80 ~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~a~ 159 (207)
T cd03755 80 VLINRARLECQSHRLTVEDPVTVEYITRYIAGLQQRYTQSGGVRPFGISTLIVGFDPDGTPRLYQTDPSGTYSAWKANAI 159 (207)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCcccceeEEEEEEEeCCCCeEEEEECCCcCEEcceEEEE
Confidence 99999999999999999999999999999999999999998999999999999999767899999999999999999999
Q ss_pred cCCchHHHHHHHHhccCCCCCCHHHHHHHHHhhC
Q psy8777 258 GVKTTEANSYLEKKFKKKTNYTGDETIQLAISCL 291 (291)
Q Consensus 258 G~gs~~~~~~Le~~~~~~~~~t~~eai~l~~~~l 291 (291)
|+|+.+++++||++|++ +||+|||++++++||
T Consensus 160 G~gs~~~~~~Le~~~~~--~ms~eeai~l~~~~l 191 (207)
T cd03755 160 GRNSKTVREFLEKNYKE--EMTRDDTIKLAIKAL 191 (207)
T ss_pred CCCCHHHHHHHHhhccC--CCCHHHHHHHHHHHH
Confidence 99999999999999999 999999999999985
No 14
>KOG0181|consensus
Probab=100.00 E-value=6.1e-46 Score=295.79 Aligned_cols=193 Identities=38% Similarity=0.679 Sum_probs=174.5
Q ss_pred CCCccceeeeeCCCCcchhhhHHHHHHhcCCceEEEEecCCeEEEEEeccCCCCccCCCCcceeEeecCcEEEEEecccc
Q psy8777 6 SAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVMTGMQA 85 (291)
Q Consensus 6 ~~~yd~~~~~fsp~g~~~q~eya~~av~~g~~t~vgi~~~~~vv~a~~~~~~~~l~~~~~~~ki~~i~~~~~~~~~G~~~ 85 (291)
..+|.+++|+|||+|+|.|+|||+.||.+|. |.|||+..||||||++|+..+.|.+..+.+|++.|.+||||..|||.+
T Consensus 3 d~~y~fslTtFSpsGKL~QieyAL~Av~~G~-~SvGi~A~nGvVlatekk~~s~L~~~~sv~KV~~i~~~IG~vYSGmgp 81 (233)
T KOG0181|consen 3 DFGYSFSLTTFSPSGKLVQIEYALTAVVNGQ-TSVGIKAANGVVLATEKKDVSPLVDEESVRKVEKITPHIGCVYSGMGP 81 (233)
T ss_pred CcccceeeEEEcCCCceehHHHHHHHHhCCC-CceeeeecCceEEEeccCCCCccchhhhhhhHhhccCCcceEEecCCC
Confidence 4689999999999999999999999999995 999999999999999999999999888888888888888888888888
Q ss_pred chhhhhhhhcccccccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcE
Q psy8777 86 DSRYQVQRARAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTV 165 (291)
Q Consensus 86 D~~~~~~~~~~~yd~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~ 165 (291)
|.|.|++..|
T Consensus 82 D~RvlV~~~r---------------------------------------------------------------------- 91 (233)
T KOG0181|consen 82 DYRVLVHKSR---------------------------------------------------------------------- 91 (233)
T ss_pred ceeehhhHHH----------------------------------------------------------------------
Confidence 8876655432
Q ss_pred EEEeecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECC
Q psy8777 166 GCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDP 245 (291)
Q Consensus 166 ~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~ 245 (291)
..++.|..-|++++++..++..++.++|+|||+++.||||++++|+|||+ ++|.||++||
T Consensus 92 -------------------kiAe~Yy~vY~e~~pt~qlv~~~asvmQEyTqsgGvrPFGvslliaG~~~-~~p~LyQvdP 151 (233)
T KOG0181|consen 92 -------------------KIAEQYYRVYGEPIPTTQLVQEVASVMQEYTQSGGVRPFGVSLLIAGWDE-GGPLLYQVDP 151 (233)
T ss_pred -------------------HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEeecCC-CceeEEEECC
Confidence 22334555788899999999999999999999999999999999999997 6899999999
Q ss_pred CCceEeeeEEEecCCchHHHHHHHHhccCCCCCCHHHHHHHHHhhC
Q psy8777 246 AGYYCSFKAVSVGVKTTEANSYLEKKFKKKTNYTGDETIQLAISCL 291 (291)
Q Consensus 246 ~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~t~~eai~l~~~~l 291 (291)
+|+++.|+++|+|.+...++++||++|.+ +|.+++++..++..|
T Consensus 152 SGsyf~wkatA~Gkn~v~aktFlEkR~~e--dleldd~ihtailtl 195 (233)
T KOG0181|consen 152 SGSYFAWKATAMGKNYVNAKTFLEKRYNE--DLELDDAIHTAILTL 195 (233)
T ss_pred ccceeehhhhhhccCcchHHHHHHHHhcc--ccccchHHHHHHHHH
Confidence 99999999999999999999999999999 999999999887543
No 15
>KOG0178|consensus
Probab=100.00 E-value=2.9e-45 Score=295.33 Aligned_cols=194 Identities=36% Similarity=0.641 Sum_probs=167.5
Q ss_pred CCccceeeeeCCCCcchhhhHHHHHHhcCCceEEEEecCCeEEEEEeccCCCCccCCC-CcceeEeecCcEEEEEecccc
Q psy8777 7 AGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPK-TVTNLYSLTPTVGCVMTGMQA 85 (291)
Q Consensus 7 ~~yd~~~~~fsp~g~~~q~eya~~av~~g~~t~vgi~~~~~vv~a~~~~~~~~l~~~~-~~~ki~~i~~~~~~~~~G~~~ 85 (291)
.+||...|+|||||||+|||||+||+.+.| |+|||.++|||||++++|.+++|++.. ..+||++|+|||.|+.+|+++
T Consensus 3 r~ydsrttiFspEGRLyQVEyAmeais~aG-t~iGila~DGvvLa~e~k~t~kll~t~~~~EKiY~l~d~iaC~vaGlt~ 81 (249)
T KOG0178|consen 3 RRYDSRTTIFSPEGRLYQVEYAMEAISHAG-TCIGILASDGVVLAGENKVTSKLLDTSIPMEKIYKLNDNIACAVAGLTS 81 (249)
T ss_pred cCcCCcccccCCCcchHHHHHHHHHHhhhc-ceeEEEecCceEEEeecccchhhhhccccHHHhhhcCCceEEEEecccc
Confidence 579999999999999999999999999999 999999999999999999999877542 235555555555555555554
Q ss_pred chhhhhhhhcccccccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcE
Q psy8777 86 DSRYQVQRARAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTV 165 (291)
Q Consensus 86 D~~~~~~~~~~~yd~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~ 165 (291)
|
T Consensus 82 D------------------------------------------------------------------------------- 82 (249)
T KOG0178|consen 82 D------------------------------------------------------------------------------- 82 (249)
T ss_pred c-------------------------------------------------------------------------------
Confidence 4
Q ss_pred EEEeecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECC
Q psy8777 166 GCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDP 245 (291)
Q Consensus 166 ~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~ 245 (291)
+..+.+.+|..++.|.+.|++++|++.|++.|.++.|.|||+.+.|||||+++-+|||+..|++||+.||
T Consensus 83 ----------AnvL~n~aRi~AQ~yl~~y~e~iP~eqLv~~lcdiKQayTQygG~RPFGVSfLYaGwd~~~gyqLy~SdP 152 (249)
T KOG0178|consen 83 ----------ANVLKNYARIIAQRYLFRYGEEIPCEQLVTFLCDIKQAYTQYGGKRPFGVSFLYAGWDDRYGYQLYQSDP 152 (249)
T ss_pred ----------HHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHhhccCcCCCceeeeeeceecCcceEEEecCC
Confidence 4445555555667777889999999999999999999999999999999999999999988899999999
Q ss_pred CCceEeeeEEEecCCchHHHHHHHHhccCCCCCCHHHHHHHHHhhC
Q psy8777 246 AGYYCSFKAVSVGVKTTEANSYLEKKFKKKTNYTGDETIQLAISCL 291 (291)
Q Consensus 246 ~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~t~~eai~l~~~~l 291 (291)
+|++..|++.++|.++..++.+|...|+++ .++++||+++|++.|
T Consensus 153 SGny~gWka~ciG~N~~Aa~s~Lkqdykdd-~~~~~eA~~laikvL 197 (249)
T KOG0178|consen 153 SGNYGGWKATCIGANSGAAQSMLKQDYKDD-ENDLEEAKALAIKVL 197 (249)
T ss_pred CCCccccceeeeccchHHHHHHHHhhhccc-cccHHHHHHHHHHHH
Confidence 999999999999999999999999999982 356999999999864
No 16
>KOG0863|consensus
Probab=100.00 E-value=3.8e-45 Score=298.41 Aligned_cols=193 Identities=30% Similarity=0.540 Sum_probs=175.4
Q ss_pred CCCccceeeeeCCCCcchhhhHHHHHHhcCCceEEEEecCCeEEEEEeccCCCCccCCCCcceeEeecCcEEEEEecccc
Q psy8777 6 SAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVMTGMQA 85 (291)
Q Consensus 6 ~~~yd~~~~~fsp~g~~~q~eya~~av~~g~~t~vgi~~~~~vv~a~~~~~~~~l~~~~~~~ki~~i~~~~~~~~~G~~~ 85 (291)
++.||.+.|+|||+|||+|||||++|||+|+ ++||+|+++++||++.||..+.|.+. ++|||+||+|+|+++||+++
T Consensus 3 rnqyd~d~t~wsPqGrl~QvEya~EavkqGs-atVGLks~thaVLvAl~r~~seLss~--QkKi~~iD~h~g~siAGLt~ 79 (264)
T KOG0863|consen 3 RNQYDNDVTTWSPQGRLHQVEYAMEAVKQGS-ATVGLKSRTHAVLVALKRAQSELSSH--QKKIFKIDDHIGISIAGLTA 79 (264)
T ss_pred cccccCceeEECCcceehHHHHHHHHHhccc-ceEeecccceEEEeeeccchhHHHHh--hheeEecccccceEEeccCc
Confidence 6899999999999999999999999999997 89999999999999999999888765 58999999999999999999
Q ss_pred chhhhhhhhcccccccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcE
Q psy8777 86 DSRYQVQRARAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTV 165 (291)
Q Consensus 86 D~~~~~~~~~~~yd~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~ 165 (291)
|+|.|++++|.
T Consensus 80 Darvl~~Ylr~--------------------------------------------------------------------- 90 (264)
T KOG0863|consen 80 DARVLSRYLRQ--------------------------------------------------------------------- 90 (264)
T ss_pred chHHHHHHHHH---------------------------------------------------------------------
Confidence 99988777643
Q ss_pred EEEeecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECC
Q psy8777 166 GCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDP 245 (291)
Q Consensus 166 ~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~ 245 (291)
|+..+++.+++++++..++..|.+-.|..|++.+.|||||.++++|+|+ .||+||.++|
T Consensus 91 --------------------ec~~~~~~~~r~~pv~rl~~~l~~k~q~~Tq~ygrRpYGVGllv~gYDe-~G~hl~e~~P 149 (264)
T KOG0863|consen 91 --------------------ECLNSRFIYGRPLPVLRLVEDLGDKAQENTQRYGRRPYGVGLLVAGYDE-SGPHLYEFCP 149 (264)
T ss_pred --------------------HHhhhhhccCCcccHHHHHHHHHHHHhhhhhhhCCccccceEEEEeecC-CCceeEEEcC
Confidence 3333444566788899999988888899999999999999999999997 7999999999
Q ss_pred CCceEeeeEEEecCCchHHHHHHHHhccCCCCCCHHHHHHHHHhhC
Q psy8777 246 AGYYCSFKAVSVGVKTTEANSYLEKKFKKKTNYTGDETIQLAISCL 291 (291)
Q Consensus 246 ~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~t~~eai~l~~~~l 291 (291)
+|.+.++++.+||+.|+.+.++||++..+..+++.||+|..++.||
T Consensus 150 sg~v~e~~g~sIGsRSQsARTyLEr~~e~f~~~~~eELI~~gi~Al 195 (264)
T KOG0863|consen 150 SGNVFECKGMSIGSRSQSARTYLERNLEEFEDSSPEELIKHGIMAL 195 (264)
T ss_pred CccEEEEeeeecccchhhHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999888999999999998875
No 17
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.4e-44 Score=304.65 Aligned_cols=191 Identities=37% Similarity=0.735 Sum_probs=183.8
Q ss_pred cccccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEEeecccccH
Q psy8777 97 GFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVMTGMQADS 176 (291)
Q Consensus 97 ~yd~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~~sG~~~D~ 176 (291)
.||.++++|+|+||++|+|||.+++.+|+ +++|++++++||+++|++.+++++..++.+||++|+++++++++|+.+|+
T Consensus 1 ~y~~~~~~fsp~G~l~Q~eya~~av~~G~-t~igik~~dgvvla~d~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~ 79 (211)
T cd03756 1 GYDRAITVFSPDGRLYQVEYAREAVKRGT-TALGIKCKEGVVLAVDKRITSKLVEPESIEKIYKIDDHVGAATSGLVADA 79 (211)
T ss_pred CCCCCCceECCCCeEhHHHHHHHHHHcCC-CEEEEEECCEEEEEEeccCCCcccCCCccceEEEEcCCEEEEEecCHHHH
Confidence 48999999999999999999999999998 99999999999999999998777777788999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECCCCceEeeeEEE
Q psy8777 177 RYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVS 256 (291)
Q Consensus 177 ~~~~~~~~~e~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~~G~~~~~~~~a 256 (291)
+.+.++++.++..|+++++++++++.+++.|+.++|.|+++++.||++++++|+|||+ .+|+||.+||+|++.++++++
T Consensus 80 ~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~-~~~~ly~vd~~G~~~~~~~~a 158 (211)
T cd03756 80 RVLIDRARVEAQIHRLTYGEPIDVEVLVKKICDLKQQYTQHGGVRPFGVALLIAGVDD-GGPRLFETDPSGAYNEYKATA 158 (211)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCeechhEEEEEEEEeC-CCCEEEEECCCCCeeeeEEEE
Confidence 9999999999999999999999999999999999999999888999999999999997 689999999999999999999
Q ss_pred ecCCchHHHHHHHHhccCCCCCCHHHHHHHHHhhC
Q psy8777 257 VGVKTTEANSYLEKKFKKKTNYTGDETIQLAISCL 291 (291)
Q Consensus 257 ~G~gs~~~~~~Le~~~~~~~~~t~~eai~l~~~~l 291 (291)
+|+|+.+++++||++|++ +|+++||++++++||
T Consensus 159 ~G~g~~~~~~~Le~~~~~--~m~~~ea~~l~~~~l 191 (211)
T cd03756 159 IGSGRQAVTEFLEKEYKE--DMSLEEAIELALKAL 191 (211)
T ss_pred ECCCCHHHHHHHHhhccC--CCCHHHHHHHHHHHH
Confidence 999999999999999999 999999999999986
No 18
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=1.5e-43 Score=304.65 Aligned_cols=191 Identities=36% Similarity=0.727 Sum_probs=183.6
Q ss_pred cccccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEEeecccccH
Q psy8777 97 GFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVMTGMQADS 176 (291)
Q Consensus 97 ~yd~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~~sG~~~D~ 176 (291)
.||.++++|+|+||++|+|||++++++|+ +++|++++++||+++|++.+++++..++.+||++|+++++++++|..+|+
T Consensus 2 ~~~~~~~~f~p~Grl~Qieya~~av~~G~-tvigi~~~dgvvlaad~r~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~ 80 (224)
T TIGR03633 2 GYDRAITVFSPDGRLYQVEYAREAVKRGT-TAVGIKTKDGVVLAVDKRITSKLVEPSSIEKIFKIDDHIGAATSGLVADA 80 (224)
T ss_pred CCCCCCceECCCCeEeHHHHHHHHHHcCC-CEEEEEECCEEEEEEeccCCccccCCCccceEEEECCCEEEEEeecHHhH
Confidence 58999999999999999999999999998 99999999999999999998777766788999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECCCCceEeeeEEE
Q psy8777 177 RYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVS 256 (291)
Q Consensus 177 ~~~~~~~~~e~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~~G~~~~~~~~a 256 (291)
+.+.+.++.++..|++.++++++++.+++.|++++|.|+++.+.||++++++|+|+|+ ++|+||.+||.|++.++++++
T Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~~~~~~rP~~v~~ll~G~d~-~~~~Ly~~D~~G~~~~~~~~a 159 (224)
T TIGR03633 81 RVLIDRARIEAQINRLTYGEPIDVETLAKKICDLKQQYTQHGGVRPFGVALLIAGVDD-GGPRLFETDPSGALLEYKATA 159 (224)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCccccceEEEEEEEeC-CcCEEEEECCCCCeecceEEE
Confidence 9999999999999999999999999999999999999999888999999999999996 789999999999999999999
Q ss_pred ecCCchHHHHHHHHhccCCCCCCHHHHHHHHHhhC
Q psy8777 257 VGVKTTEANSYLEKKFKKKTNYTGDETIQLAISCL 291 (291)
Q Consensus 257 ~G~gs~~~~~~Le~~~~~~~~~t~~eai~l~~~~l 291 (291)
+|+|+.+++++||+.|++ +|+++||++++++||
T Consensus 160 ~G~g~~~~~~~L~~~~~~--~~~~eeai~l~~~al 192 (224)
T TIGR03633 160 IGAGRQAVTEFLEKEYRE--DLSLDEAIELALKAL 192 (224)
T ss_pred ECCCCHHHHHHHHHhccC--CCCHHHHHHHHHHHH
Confidence 999999999999999999 999999999999986
No 19
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.6e-43 Score=300.80 Aligned_cols=190 Identities=33% Similarity=0.661 Sum_probs=180.3
Q ss_pred ccccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEEeecccccHH
Q psy8777 98 FDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVMTGMQADSR 177 (291)
Q Consensus 98 yd~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~~sG~~~D~~ 177 (291)
||+++++|+|+||++|+|||++++++|+ +++|++++++||+++|++.+.+++..++.+||++|+++++++++|+.+|++
T Consensus 1 ~~~~~~~f~p~G~~~Q~eya~~a~~~G~-t~igik~~dgVvlaad~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~ 79 (213)
T cd03753 1 YDRGVNTFSPEGRLFQVEYAIEAIKLGS-TAIGIKTKEGVVLAVEKRITSPLMEPSSVEKIMEIDDHIGCAMSGLIADAR 79 (213)
T ss_pred CCCCCccCCCCCeEhHHHHHHHHHhcCC-CEEEEEeCCEEEEEEecccCCcCcCCCccceEEEEcCCEEEEEecCHHHHH
Confidence 7899999999999999999999999998 999999999999999999987776667789999999999999999999999
Q ss_pred HHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHHHhhhcC-----cceeeeeeeeEEEEeCCCCcEEEEECCCCceEee
Q psy8777 178 YQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNA-----EMRPLGCSMILISYDENEGPLIYKTDPAGYYCSF 252 (291)
Q Consensus 178 ~~~~~~~~e~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~-----~~~p~~~~~li~G~d~~~gp~Ly~~d~~G~~~~~ 252 (291)
.+.+.++.+++.|++.++++++++.+++.|+.+++.|++.. ..||++++++|+|||+ .||+||.+||+|++.++
T Consensus 80 ~l~~~~r~~~~~~~~~~~~~i~~~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D~-~gp~Ly~vd~~G~~~~~ 158 (213)
T cd03753 80 TLIDHARVEAQNHRFTYNEPMTVESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVDE-NGPQLFHTDPSGTFTRC 158 (213)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhCcccccccccccceEEEEEEEEcC-CCCEEEEECCCCCeecc
Confidence 99999999999999999999999999999999998887643 3699999999999996 78999999999999999
Q ss_pred eEEEecCCchHHHHHHHHhccCCCCCCHHHHHHHHHhhC
Q psy8777 253 KAVSVGVKTTEANSYLEKKFKKKTNYTGDETIQLAISCL 291 (291)
Q Consensus 253 ~~~a~G~gs~~~~~~Le~~~~~~~~~t~~eai~l~~~~l 291 (291)
+++++|+++++++++||++|++ +|++|||++++++||
T Consensus 159 ~~~a~G~~~~~~~~~L~~~~~~--~ls~eeai~l~~~~l 195 (213)
T cd03753 159 DAKAIGSGSEGAQSSLQEKYHK--DMTLEEAEKLALSIL 195 (213)
T ss_pred cEEEECCCcHHHHHHHHhhccC--CCCHHHHHHHHHHHH
Confidence 9999999999999999999999 999999999999986
No 20
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=100.00 E-value=2.9e-43 Score=299.79 Aligned_cols=191 Identities=47% Similarity=0.874 Sum_probs=183.2
Q ss_pred ccccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEEeecccccHH
Q psy8777 98 FDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVMTGMQADSR 177 (291)
Q Consensus 98 yd~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~~sG~~~D~~ 177 (291)
||..+++|+|+||++|+||+++++.+|+ +++|++++++|++++|++.+.+++..++.+|||+|+++++++++|..+|++
T Consensus 1 ~~~~~~~f~~~G~~~q~eya~~~~~~G~-tvigi~~~dgVvlaaD~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~ 79 (209)
T cd01911 1 YDRSITTFSPEGRLFQVEYALEAVKNGS-TAVGIKGKDGVVLAVEKKVTSKLLDPSSVEKIFKIDDHIGCAVAGLTADAR 79 (209)
T ss_pred CCCCCccCCCCCEEeHHHHHHHHHHcCC-CEEEEEECCEEEEEEEecCCccccCCcccceEEEecCCeEEEeccCcHhHH
Confidence 7899999999999999999999999998 999999999999999999986666667789999999999999999999999
Q ss_pred HHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECCCCceEeeeEEEe
Q psy8777 178 YQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSV 257 (291)
Q Consensus 178 ~~~~~~~~e~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~~G~~~~~~~~a~ 257 (291)
.+.+.++.++..|+++++++++++.+++++++++|.|+++.+.||++++++|+|||++++|+||.+||.|++.+++++++
T Consensus 80 ~l~~~l~~~~~~~~~~~g~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d~~~~~~Ly~iD~~G~~~~~~~~a~ 159 (209)
T cd01911 80 VLVNRARVEAQNYRYTYGEPIPVEVLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDEEGGPQLYQTDPSGTYFGYKATAI 159 (209)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccChhheEEEEEEcCCCCcEEEEECCCCCeeeeeEEEe
Confidence 99999999999999999999999999999999999999988899999999999999766899999999999999999999
Q ss_pred cCCchHHHHHHHHhccCCCCCCHHHHHHHHHhhC
Q psy8777 258 GVKTTEANSYLEKKFKKKTNYTGDETIQLAISCL 291 (291)
Q Consensus 258 G~gs~~~~~~Le~~~~~~~~~t~~eai~l~~~~l 291 (291)
|+|+.+++++||+.|++ +|+++||++++++||
T Consensus 160 G~g~~~~~~~L~~~~~~--~ms~~ea~~l~~~~l 191 (209)
T cd01911 160 GKGSQEAKTFLEKRYKK--DLTLEEAIKLALKAL 191 (209)
T ss_pred CCCcHHHHHHHHHhccc--CCCHHHHHHHHHHHH
Confidence 99999999999999999 999999999999985
No 21
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3e-35 Score=247.25 Aligned_cols=162 Identities=20% Similarity=0.309 Sum_probs=152.2
Q ss_pred eeEEEEecccEEEEEeeccCC-CcccCCCCcceEEEecCcEEEEeecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHH
Q psy8777 126 VTSVAVKGVDTAVVATEKKVP-DSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLC 204 (291)
Q Consensus 126 ~~~igi~~~~~vvl~~d~~~~-~~l~~~~~~~kI~~i~~~~~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~ 204 (291)
++++|+++++|||+++|++.+ +.++.+++.+|||+|+++++++++|..+|++.+.++++.+++.|++.++++++++.++
T Consensus 2 ~t~igi~~~dgVvlaad~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la 81 (193)
T cd03758 2 ETLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAAA 81 (193)
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEecCcccEEEeCCCeEEEEccchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 389999999999999999997 4557777889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECCCCceEeeeEEEecCCchHHHHHHHHhccCCCCCCHHHHH
Q psy8777 205 NRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKKKTNYTGDETI 284 (291)
Q Consensus 205 ~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~t~~eai 284 (291)
+.+++++|.|++. + ||++++++|+|||++.||+||.+||+|++.+++++|+|+|+.+++++||+.|++ +||.|||+
T Consensus 82 ~~l~~~~~~~~~~-~-rP~~~~~li~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~--~ms~eeai 157 (193)
T cd03758 82 NFTRRELAESLRS-R-TPYQVNLLLAGYDKVEGPSLYYIDYLGTLVKVPYAAHGYGAYFCLSILDRYYKP--DMTVEEAL 157 (193)
T ss_pred HHHHHHHHHHhhc-C-CCeEEEEEEEEEcCCCCcEEEEECCCcceEECCeeEEeecHHHHHHHHHhccCC--CCCHHHHH
Confidence 9999999887653 3 899999999999976789999999999999999999999999999999999999 99999999
Q ss_pred HHHHhhC
Q psy8777 285 QLAISCL 291 (291)
Q Consensus 285 ~l~~~~l 291 (291)
+++++||
T Consensus 158 ~l~~~a~ 164 (193)
T cd03758 158 ELMKKCI 164 (193)
T ss_pred HHHHHHH
Confidence 9998875
No 22
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=8.1e-35 Score=245.57 Aligned_cols=164 Identities=20% Similarity=0.249 Sum_probs=153.1
Q ss_pred eeEEEEecccEEEEEeeccCC-CcccCCCCcceEEEecCcEEEEeecccccHHHHHHHHHHHHH-HhHhhhCCCCCHHHH
Q psy8777 126 VTSVAVKGVDTAVVATEKKVP-DSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAA-SFKYKHGYSMPIDQL 203 (291)
Q Consensus 126 ~~~igi~~~~~vvl~~d~~~~-~~l~~~~~~~kI~~i~~~~~~~~sG~~~D~~~~~~~~~~e~~-~~~~~~~~~~s~~~l 203 (291)
++++|++++|+|||++|++.+ +.++.+++.+|||+|+++++++++|..+|++.+.++++.+++ .+.+.++.+++++.+
T Consensus 3 ~T~igi~~kdgVvlaad~r~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~~l 82 (197)
T cd03760 3 TSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPKEI 82 (197)
T ss_pred ceEEEEEeCCcEEEEEcCcccccceeecCCCCcEEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHH
Confidence 389999999999999999998 678877788999999999999999999999999999999986 566788899999999
Q ss_pred HHHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECCCCceEeeeEEEecCCchHHHHHHHHhccCCCCCCHHHH
Q psy8777 204 CNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKKKTNYTGDET 283 (291)
Q Consensus 204 ~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~t~~ea 283 (291)
++.++.++ |+++++.|||+++++|+|||++++|+||.+||+|++.+++++|+|+|+.+++++||+.|++..+||+|||
T Consensus 83 a~~i~~~~--y~~~~~~rP~~v~~iiaG~D~~~gp~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~ms~eea 160 (197)
T cd03760 83 HSYLTRVL--YNRRSKMNPLWNTLVVGGVDNEGEPFLGYVDLLGTAYEDPHVATGFGAYLALPLLREAWEKKPDLTEEEA 160 (197)
T ss_pred HHHHHHHH--HHHhhcCCCceEEEEEEEEcCCCCEEEEEEcCCccEEECCEeEEccHHHHHHHHHHhhcCCCCCCCHHHH
Confidence 99999986 8888889999999999999975789999999999999999999999999999999999997668999999
Q ss_pred HHHHHhhC
Q psy8777 284 IQLAISCL 291 (291)
Q Consensus 284 i~l~~~~l 291 (291)
++++++||
T Consensus 161 ~~l~~~~l 168 (197)
T cd03760 161 RALIEECM 168 (197)
T ss_pred HHHHHHHH
Confidence 99999985
No 23
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.1e-34 Score=244.28 Aligned_cols=162 Identities=15% Similarity=0.275 Sum_probs=150.2
Q ss_pred CCceeEEEEecccEEEEEeeccCCCcccC-CCCcceEEEecCcEEEEeecccccHHHHHHHHHHHHHHhHhhhCCCCCHH
Q psy8777 123 QGGVTSVAVKGVDTAVVATEKKVPDSLVD-PKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPID 201 (291)
Q Consensus 123 ~g~~~~igi~~~~~vvl~~d~~~~~~l~~-~~~~~kI~~i~~~~~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~ 201 (291)
+|+ +++|++++++|||++|++.+.+++. .++.+|||+|++|++++++|..+|++.+.++++.+++.|++.++.+++++
T Consensus 2 ~G~-t~igik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~ 80 (195)
T cd03759 2 NGG-AVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYRLREEREIKPK 80 (195)
T ss_pred CCc-eEEEEEcCCEEEEEEccccccCCEeEecCCCeEEEeCCCEEEEccchHHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 355 9999999999999999999877665 44678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECCCCceEeee-EEEecCCchHHHHHHHHhccCCCCCCH
Q psy8777 202 QLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFK-AVSVGVKTTEANSYLEKKFKKKTNYTG 280 (291)
Q Consensus 202 ~l~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~~G~~~~~~-~~a~G~gs~~~~~~Le~~~~~~~~~t~ 280 (291)
.++++|++++ |+++ .+|++++++|+|||++++|+||.+||+|++..+. ++|+|+|++.++++||+.|++ +||+
T Consensus 81 ~la~~l~~~l--y~~r--~~P~~v~~ii~G~D~~~~p~Ly~~D~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~--~~s~ 154 (195)
T cd03759 81 TFSSLISSLL--YEKR--FGPYFVEPVVAGLDPDGKPFICTMDLIGCPSIPSDFVVSGTASEQLYGMCESLWRP--DMEP 154 (195)
T ss_pred HHHHHHHHHH--HHhc--CCCceEEEEEEEEcCCCCEEEEEEcCCCcccccCCEEEEcccHHHHHHHHHhccCC--CCCH
Confidence 9999999998 6553 5899999999999976779999999999998887 999999999999999999999 9999
Q ss_pred HHHHHHHHhhC
Q psy8777 281 DETIQLAISCL 291 (291)
Q Consensus 281 ~eai~l~~~~l 291 (291)
+||++++++||
T Consensus 155 ~ea~~l~~~~l 165 (195)
T cd03759 155 DELFETISQAL 165 (195)
T ss_pred HHHHHHHHHHH
Confidence 99999999985
No 24
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3e-34 Score=240.27 Aligned_cols=159 Identities=19% Similarity=0.288 Sum_probs=149.8
Q ss_pred eeEEEEecccEEEEEeeccCCC-cccCCCCcceEEEecCcEEEEeecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHH
Q psy8777 126 VTSVAVKGVDTAVVATEKKVPD-SLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLC 204 (291)
Q Consensus 126 ~~~igi~~~~~vvl~~d~~~~~-~l~~~~~~~kI~~i~~~~~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~ 204 (291)
++++|++++|+|||++|++.+. .++.+++.+|||+|+++++++++|+.+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 tT~igi~~kdgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~~~~la 80 (188)
T cd03761 1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNKERISVAAAS 80 (188)
T ss_pred CcEEEEEECCEEEEEEcCCccCCcEEEcCCcceEEEccCcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 3789999999999999999985 566667889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECCCCceEeeeEEEecCCchHHHHHHHHhccCCCCCCHHHHH
Q psy8777 205 NRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKKKTNYTGDETI 284 (291)
Q Consensus 205 ~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~t~~eai 284 (291)
+.+++++|.++ ..|++++++|+|||+ +||+||++||+|++.+++++++|+|+.+++++||+.|++ +||.|||+
T Consensus 81 ~~ls~~l~~~~----~~~~~v~~li~G~D~-~g~~L~~~dp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~--~~s~eea~ 153 (188)
T cd03761 81 KLLSNMLYQYK----GMGLSMGTMICGWDK-TGPGLYYVDSDGTRLKGDLFSVGSGSTYAYGVLDSGYRY--DLSVEEAY 153 (188)
T ss_pred HHHHHHHHhcC----CCCeEEEEEEEEEeC-CCCEEEEEcCCceEEEcCeEEEcccHHHHHHHHHhcCCC--CCCHHHHH
Confidence 99999997763 358999999999996 789999999999999999999999999999999999999 99999999
Q ss_pred HHHHhhC
Q psy8777 285 QLAISCL 291 (291)
Q Consensus 285 ~l~~~~l 291 (291)
+++.+||
T Consensus 154 ~l~~~~l 160 (188)
T cd03761 154 DLARRAI 160 (188)
T ss_pred HHHHHHH
Confidence 9999985
No 25
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=100.00 E-value=1e-33 Score=242.75 Aligned_cols=168 Identities=16% Similarity=0.206 Sum_probs=152.5
Q ss_pred hHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEEeecccccHHHHHHHHHHHHHHhHh
Q psy8777 113 QVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKY 192 (291)
Q Consensus 113 qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~~sG~~~D~~~~~~~~~~e~~~~~~ 192 (291)
.-|||++++++|+ +++|+++++||||++|++. ++.+|||+|++|++++++|+.+|++.++++++.+++.+++
T Consensus 16 ~~EYA~kav~~g~-T~VGIk~kdgVVLaaek~~-------~~~~KI~~I~d~ig~~~sG~~~D~~~lv~~~r~~a~~~~~ 87 (228)
T TIGR03691 16 RAELARKGIARGR-SVVVLTYADGILFVAENPS-------RSLHKISELYDRIGFAAVGKYNEFENLRRAGIRYADMRGY 87 (228)
T ss_pred HHHHHHHHHHcCC-cEEEEEeCCeEEEEEecCC-------CCcCcEEEecCCEEEEEcCCHHHHHHHHHHHHHHHHHHhh
Confidence 3499999999987 9999999999999999852 3568999999999999999999999999999999999999
Q ss_pred hhC-CCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEEEeC-CCCcEEEEECCCCceEeee-EEEecCCchHHHHHHH
Q psy8777 193 KHG-YSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDE-NEGPLIYKTDPAGYYCSFK-AVSVGVKTTEANSYLE 269 (291)
Q Consensus 193 ~~~-~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~-~~gp~Ly~~d~~G~~~~~~-~~a~G~gs~~~~~~Le 269 (291)
.++ .+++++.+++.++...+.++ +++.|||+|+++|+|||+ +.||+||.+||+|++.+++ ++|+|+|++.++++||
T Consensus 88 ~~~~~~~~v~~la~~~tq~~~~~~-~~~~RP~gvs~Li~G~d~~~~gp~Ly~vDpsG~~~~~~~~~aiG~gs~~a~~~Le 166 (228)
T TIGR03691 88 SYDRRDVTGRGLANAYAQTLGTIF-TEQQKPYEVEICVAEVGETPDQDQLYRITFDGSIVDERGFVVMGGTTEPIATALK 166 (228)
T ss_pred hcCCCCccHHHHHHHHHhhccccc-ccccCcceEEEEEEEEcCCCCCCEEEEECCCCCceeccceEEECCChHHHHHHHH
Confidence 998 68999998887777665554 456799999999999985 4689999999999999986 8999999999999999
Q ss_pred HhccCCCCCCHHHHHHHHHhhC
Q psy8777 270 KKFKKKTNYTGDETIQLAISCL 291 (291)
Q Consensus 270 ~~~~~~~~~t~~eai~l~~~~l 291 (291)
++|++ +||+|||++++++||
T Consensus 167 k~y~~--~ms~eeai~la~~aL 186 (228)
T TIGR03691 167 ESYRD--GLSLADALGLAVQAL 186 (228)
T ss_pred HhcCC--CCCHHHHHHHHHHHH
Confidence 99999 999999999999985
No 26
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=100.00 E-value=1.3e-33 Score=241.83 Aligned_cols=164 Identities=20% Similarity=0.295 Sum_probs=152.3
Q ss_pred CceeEEEEecccEEEEEeeccCCC-cccCCCCcceEEEecCcEEEEeecccccHHHHHHHHHHHHHHhHhhhCCCCCHHH
Q psy8777 124 GGVTSVAVKGVDTAVVATEKKVPD-SLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQ 202 (291)
Q Consensus 124 g~~~~igi~~~~~vvl~~d~~~~~-~l~~~~~~~kI~~i~~~~~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~ 202 (291)
|+ +++|++++|+||+++|++.+. .++.+++.+|||+|+++++++++|..+|++.+.++++.+++.|++.++.+++++.
T Consensus 2 G~-T~igi~~kdgVvlaad~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~ 80 (219)
T TIGR03690 2 GT-TIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRLFQVELEHYEKIEGVPLTLDG 80 (219)
T ss_pred Cc-EEEEEEECCEEEEEECCccccCcEEEcCCcceEEEcCCcEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 44 899999999999999999984 7777778899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCcceeeeeeeeEEEEeCC-CCcEEEEECCCC-ceEeeeEEEecCCchHHHHHHHHhccCCCCCCH
Q psy8777 203 LCNRIADISQVYTQNAEMRPLGCSMILISYDEN-EGPLIYKTDPAG-YYCSFKAVSVGVKTTEANSYLEKKFKKKTNYTG 280 (291)
Q Consensus 203 l~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~-~gp~Ly~~d~~G-~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~t~ 280 (291)
+++.|++++|.++ ....||++++++|+|||++ ++|+||.+||+| ++..++++|+|+|+.+++++||++|++ +||.
T Consensus 81 la~~ls~~~~~~~-~~~~rp~~v~~iiaG~D~~~~~~~Ly~~Dp~G~~~~~~~~~a~G~g~~~a~~~Le~~~~~--~ms~ 157 (219)
T TIGR03690 81 KANRLAAMVRGNL-PAAMQGLAVVPLLAGYDLDAGAGRIFSYDVTGGRYEERGYHAVGSGSVFAKGALKKLYSP--DLDE 157 (219)
T ss_pred HHHHHHHHHHhhh-hhccCCceEEEEEEEECCCCCCcEEEEEeCCCCeeecCCeEEEeccHHHHHHHHHhcCCC--CcCH
Confidence 9999999998765 3458999999999999964 579999999999 577779999999999999999999999 9999
Q ss_pred HHHHHHHHhhC
Q psy8777 281 DETIQLAISCL 291 (291)
Q Consensus 281 ~eai~l~~~~l 291 (291)
|||++++++||
T Consensus 158 eeai~l~~~al 168 (219)
T TIGR03690 158 DDALRVAVEAL 168 (219)
T ss_pred HHHHHHHHHHH
Confidence 99999999985
No 27
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.7e-33 Score=240.38 Aligned_cols=163 Identities=12% Similarity=0.162 Sum_probs=148.2
Q ss_pred eeEEEEecccEEEEEeeccCCCcccCCCCcceEEEec----CcEEEEeecccccHHHHHHHHHHHHHHhHhhhCC-CCCH
Q psy8777 126 VTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLT----PTVGCVMTGMQADSRYQVQRARYEAASFKYKHGY-SMPI 200 (291)
Q Consensus 126 ~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~----~~~~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~-~~s~ 200 (291)
|.++|+++++||||++|++.+.+++..++.+|||+|+ +|++++.+|..+|++.++++++.+++.|++.+++ ++++
T Consensus 1 ~~~vGIk~kdGVVLaadkr~~~~l~~~~~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~v 80 (236)
T cd03765 1 TYCLGIKLDAGLVFASDSRTNAGVDNISTYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNAPTM 80 (236)
T ss_pred CeEEEEEeCCeEEEEEccCccCCCccccccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhCCCCCCH
Confidence 3679999999999999999987777656789999998 8999999999999999999999999999999999 8999
Q ss_pred HHHHHHHHHHH-HHhhhcCc-----ceeeeeeeeEEEEeCCCCcEEEEECCCCceEee----eEEEecCCchHHHHHHHH
Q psy8777 201 DQLCNRIADIS-QVYTQNAE-----MRPLGCSMILISYDENEGPLIYKTDPAGYYCSF----KAVSVGVKTTEANSYLEK 270 (291)
Q Consensus 201 ~~l~~~l~~~~-~~~~~~~~-----~~p~~~~~li~G~d~~~gp~Ly~~d~~G~~~~~----~~~a~G~gs~~~~~~Le~ 270 (291)
+.+++.++.++ +.+++..+ .||++++++|+|||++.||+||.+||+|++.++ +++|+|. +.+++++||+
T Consensus 81 ~~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~~~Gp~LY~idpsG~~~e~~a~~~~~AiG~-~~~a~~~Lek 159 (236)
T cd03765 81 FDAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIKGEEPRLFLIYPQGNFIEATPDTPFLQIGE-TKYGKPILDR 159 (236)
T ss_pred HHHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEeEECCCCCEEEEECCCCCEEeecCCCceeeeCC-chhhHHHHHH
Confidence 99999999985 34555553 489999999999996678999999999999999 5689996 7999999999
Q ss_pred hccCCCCCCHHHHHHHHHhhC
Q psy8777 271 KFKKKTNYTGDETIQLAISCL 291 (291)
Q Consensus 271 ~~~~~~~~t~~eai~l~~~~l 291 (291)
+|++ +||+|||++++++||
T Consensus 160 ~yk~--~ms~eeai~la~~al 178 (236)
T cd03765 160 VITP--DTSLEDAAKCALVSM 178 (236)
T ss_pred hcCC--CCCHHHHHHHHHHHH
Confidence 9999 999999999999986
No 28
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.9e-33 Score=239.64 Aligned_cols=165 Identities=22% Similarity=0.356 Sum_probs=151.3
Q ss_pred hhcCCceeEEEEecccEEEEEeeccCCCcc-cCCCCcceEEEecCcEEEEeecccccHHHHHHHHHHHHHHhHhhhCCCC
Q psy8777 120 AINQGGVTSVAVKGVDTAVVATEKKVPDSL-VDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSM 198 (291)
Q Consensus 120 ~~~~g~~~~igi~~~~~vvl~~d~~~~~~l-~~~~~~~kI~~i~~~~~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~ 198 (291)
++++|+ +++|+++++||++++|++.+.++ +..++.+|||+|+++++++++|..+|++.+.+.++.+++.|+++++.++
T Consensus 4 ~~~~G~-Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~i 82 (212)
T cd03757 4 YTDNGG-TVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNKEM 82 (212)
T ss_pred ccCCCc-cEEEEEcCCEEEEEECCccccCCEeEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHHHHHHHHHhHHhCCCC
Confidence 345566 99999999999999999998655 4456789999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECCCCceEeeeEEEecCCchHHHHHHHHhcc-----
Q psy8777 199 PIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFK----- 273 (291)
Q Consensus 199 s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~----- 273 (291)
+++.+++.++.++ |.+ +.+|++++++|+|||++++|+||.+||+|++.+++++|+|+|+.+++++||+.|+
T Consensus 83 ~~~~la~~ls~~l--y~~--R~~P~~~~~iiaG~D~~~~p~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~ 158 (212)
T cd03757 83 STEAIAQLLSTIL--YSR--RFFPYYVFNILAGIDEEGKGVVYSYDPVGSYERETYSAGGSASSLIQPLLDNQVGRKNQN 158 (212)
T ss_pred CHHHHHHHHHHHH--Hhh--cCCCeEEEEEEEEEcCCCCEEEEEEcCccCeeecCEEEEeecHHHHHHHHHHHHHhhccC
Confidence 9999999999998 544 3579999999999997667999999999999999999999999999999999986
Q ss_pred ----CCCCCCHHHHHHHHHhhC
Q psy8777 274 ----KKTNYTGDETIQLAISCL 291 (291)
Q Consensus 274 ----~~~~~t~~eai~l~~~~l 291 (291)
+ +||+|||++++++||
T Consensus 159 ~~~~~--~ms~eea~~l~~~~l 178 (212)
T cd03757 159 NVERT--PLSLEEAVSLVKDAF 178 (212)
T ss_pred cCCCC--CCCHHHHHHHHHHHH
Confidence 5 899999999999985
No 29
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=3.7e-33 Score=233.33 Aligned_cols=159 Identities=23% Similarity=0.407 Sum_probs=150.3
Q ss_pred eeEEEEecccEEEEEeeccCC-CcccCCCCcceEEEecCcEEEEeecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHH
Q psy8777 126 VTSVAVKGVDTAVVATEKKVP-DSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLC 204 (291)
Q Consensus 126 ~~~igi~~~~~vvl~~d~~~~-~~l~~~~~~~kI~~i~~~~~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~ 204 (291)
++++|++++++||+++|++.+ +.++.+++.+|||+|+++++++++|..+|++.+.++++.+++.|++.++.+++++.++
T Consensus 2 ~t~igi~~~dgVvla~d~~~~~~~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 81 (185)
T TIGR03634 2 TTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKALA 81 (185)
T ss_pred CcEEEEEeCCEEEEEEcCcccCCCEEecCCcccEEEcCCCEEEEcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 389999999999999999988 6777777889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECCCCceEeeeEEEecCCchHHHHHHHHhccCCCCCCHHHHH
Q psy8777 205 NRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKKKTNYTGDETI 284 (291)
Q Consensus 205 ~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~t~~eai 284 (291)
++|+++++.+ +.||++++++|+|+|+ +||+||.+||+|++.+++++++|+|+.+++++||+.|++ +||++||+
T Consensus 82 ~~l~~~~~~~----~~rP~~v~~ivaG~d~-~g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~--~~s~~ea~ 154 (185)
T TIGR03634 82 TLLSNILNSN----RFFPFIVQLLVGGVDE-EGPHLYSLDPAGGIIEDDYTATGSGSPVAYGVLEDEYRE--DMSVEEAK 154 (185)
T ss_pred HHHHHHHHhc----CCCCeEEEEEEEEEeC-CCCEEEEECCCCCeEECCEEEEcCcHHHHHHHHHhcCCC--CCCHHHHH
Confidence 9999999654 5799999999999997 689999999999999999999999999999999999999 99999999
Q ss_pred HHHHhhC
Q psy8777 285 QLAISCL 291 (291)
Q Consensus 285 ~l~~~~l 291 (291)
+++++||
T Consensus 155 ~l~~~~l 161 (185)
T TIGR03634 155 KLAVRAI 161 (185)
T ss_pred HHHHHHH
Confidence 9999986
No 30
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.5e-33 Score=239.62 Aligned_cols=202 Identities=28% Similarity=0.372 Sum_probs=139.5
Q ss_pred ccceeeeeCCCCcchhhhHHHHHHhcCCceEEEEecCCeEEEEEeccCCCCccCCCCcceeEeecCcEEEEEeccccchh
Q psy8777 9 FDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVMTGMQADSR 88 (291)
Q Consensus 9 yd~~~~~fsp~g~~~q~eya~~av~~g~~t~vgi~~~~~vv~a~~~~~~~~l~~~~~~~ki~~i~~~~~~~~~G~~~D~~ 88 (291)
||+++|+|||||||+|||||++|+++|+ |+|||+++||||||+|+|....+..++..+||++|++|++|++||+.+|++
T Consensus 1 ~d~~~~~fsp~Gr~~Qveya~~av~~G~-t~Igik~~dgVvlaad~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~ 79 (207)
T cd03755 1 YDRAITVFSPDGHLFQVEYAQEAVRKGT-TAVGVRGKDCVVLGVEKKSVAKLQDPRTVRKICMLDDHVCLAFAGLTADAR 79 (207)
T ss_pred CCCCCceECCCCeEeHHHHHHHHHHcCC-CEEEEEeCCEEEEEEecCCCCcccCCCccCcEEEECCCEEEEEecchhhHH
Confidence 8999999999999999999999999996 999999999999999999888888888889999999999999999999999
Q ss_pred hhhhhhcccccccccccCCCCchhhHHHHHhhh---cCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcE
Q psy8777 89 YQVQRARAGFDRHITIFSPEGRLYQVEYAFKAI---NQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTV 165 (291)
Q Consensus 89 ~~~~~~~~~yd~~~~~~sp~grl~qve~~~~~~---~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~ 165 (291)
.+++++|.+.......+. +-..++...+.+ .+-.+...+.+|..+.++.+. ++++.+|.||.+||.|
T Consensus 80 ~l~~~~r~~~~~~~~~~~---~~i~~~~la~~ls~~~~~y~~~~~~rP~~vs~ii~G-------~D~~~~p~Ly~iD~~G 149 (207)
T cd03755 80 VLINRARLECQSHRLTVE---DPVTVEYITRYIAGLQQRYTQSGGVRPFGISTLIVG-------FDPDGTPRLYQTDPSG 149 (207)
T ss_pred HHHHHHHHHHHHHHHHHC---CCCCHHHHHHHHHHHHHHHhcccCcccceeEEEEEE-------EeCCCCeEEEEECCCc
Confidence 999998844321111111 111111111111 111112235667776666654 5555689999999999
Q ss_pred EEE-eecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeE
Q psy8777 166 GCV-MTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMIL 229 (291)
Q Consensus 166 ~~~-~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li 229 (291)
.+. ....+.+..+......++. .+.++|+.+++++.+.+.+....+ ...-.+++.+
T Consensus 150 ~~~~~~~~a~G~gs~~~~~~Le~-----~~~~~ms~eeai~l~~~~l~~~~~---~~~~~~e~~~ 206 (207)
T cd03755 150 TYSAWKANAIGRNSKTVREFLEK-----NYKEEMTRDDTIKLAIKALLEVVQ---SGSKNIELAV 206 (207)
T ss_pred CEEcceEEEECCCCHHHHHHHHh-----hccCCCCHHHHHHHHHHHHHHHhC---CCCCeEEEEE
Confidence 753 2223333444444444443 345589999999966665533322 3444555544
No 31
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.4e-32 Score=230.39 Aligned_cols=159 Identities=25% Similarity=0.405 Sum_probs=149.8
Q ss_pred eeEEEEecccEEEEEeeccCCC-cccCCCCcceEEEecCcEEEEeecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHH
Q psy8777 126 VTSVAVKGVDTAVVATEKKVPD-SLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLC 204 (291)
Q Consensus 126 ~~~igi~~~~~vvl~~d~~~~~-~l~~~~~~~kI~~i~~~~~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~ 204 (291)
++++|+++++|||+++|++.+. .++.+++.+||++|+++++++++|+.+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 tt~iai~~~dgvvia~d~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (188)
T cd03764 1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALA 80 (188)
T ss_pred CcEEEEEeCCEEEEEEccccccCCEEecCCcccEEEccCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 3789999999999999999984 666677889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECCCCceEeeeEEEecCCchHHHHHHHHhccCCCCCCHHHHH
Q psy8777 205 NRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKKKTNYTGDETI 284 (291)
Q Consensus 205 ~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~t~~eai 284 (291)
+.++++++.+ +.||++++++|+|+|+ ++|+||.+||+|++.+++++|+|+|+.+++++||+.|++ +|+++||+
T Consensus 81 ~~i~~~~~~~----~~~P~~~~~lvaG~d~-~~~~ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~--~~~~~ea~ 153 (188)
T cd03764 81 TLLSNILNSS----KYFPYIVQLLIGGVDE-EGPHLYSLDPLGSIIEDKYTATGSGSPYAYGVLEDEYKE--DMTVEEAK 153 (188)
T ss_pred HHHHHHHHhc----CCCCcEEEEEEEEEeC-CCCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHhcCCC--CCCHHHHH
Confidence 9999999654 4799999999999997 789999999999999999999999999999999999999 99999999
Q ss_pred HHHHhhC
Q psy8777 285 QLAISCL 291 (291)
Q Consensus 285 ~l~~~~l 291 (291)
+++++||
T Consensus 154 ~l~~~~l 160 (188)
T cd03764 154 KLAIRAI 160 (188)
T ss_pred HHHHHHH
Confidence 9999885
No 32
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=100.00 E-value=1.2e-32 Score=230.96 Aligned_cols=167 Identities=32% Similarity=0.596 Sum_probs=155.6
Q ss_pred cCCceeEEEEecccEEEEEeeccCC--CcccCCCCcceEEEecCcEEEEeecccccHHHHHHHHHHHHHHhHhhhCCCCC
Q psy8777 122 NQGGVTSVAVKGVDTAVVATEKKVP--DSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMP 199 (291)
Q Consensus 122 ~~g~~~~igi~~~~~vvl~~d~~~~--~~l~~~~~~~kI~~i~~~~~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s 199 (291)
.+|+ +++|++++++|++++|++.+ ..++.++..+|||+|+++++++++|..+|.+.+.++++.++..+++.++.+++
T Consensus 2 ~~G~-t~vgi~~~dgvvla~d~~~~~g~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~ 80 (190)
T PF00227_consen 2 NNGT-TVVGIKGKDGVVLAADKRISYGSKLRSPNTVDKIFKINDNIIIGFSGLTADFQYLIRRLREEAQEYRFSYGRPIS 80 (190)
T ss_dssp HTSB-EEEEEEESSEEEEEEEEEEEETTEEEESSTSSSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTC
T ss_pred CCCe-EEEEEEECCEEEEEEccccccccccccccccceeeeccCcceeeccccccchHHHHhhhcccchhhhhccCcccc
Confidence 4566 99999999999999999988 34445444699999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECCCCceEee-eEEEecCCchHHHHHHHHhccCCCCC
Q psy8777 200 IDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSF-KAVSVGVKTTEANSYLEKKFKKKTNY 278 (291)
Q Consensus 200 ~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~~G~~~~~-~~~a~G~gs~~~~~~Le~~~~~~~~~ 278 (291)
++.+++.+++.++.++.+.+.||++++++++|+|++++|+||.+||+|++.++ +++++|+|+.+++++||+.|++ +|
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~~~~~~l~~vd~~G~~~~~~~~~aiG~g~~~~~~~l~~~~~~--~~ 158 (190)
T PF00227_consen 81 PEYLAKAIASLIQNYTYRSGRRPYGVSLLIAGYDEDGGPQLYSVDPSGSYIECKRFAAIGSGSQFAQPILEKLYKP--DL 158 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSTTSEEEEEEEEETTTEEEEEEEETTSEEEEBSSEEEESTTHHHHHHHHHHHHTT--TS
T ss_pred chhhhhhhHHHHhhhcccccccCccccceeeeeccccccceeeeccccccccccccccchhcchhhhHHHHhhccC--CC
Confidence 99999999999999999888999999999999997666999999999999999 6999999999999999999999 99
Q ss_pred CHHHHHHHHHhhC
Q psy8777 279 TGDETIQLAISCL 291 (291)
Q Consensus 279 t~~eai~l~~~~l 291 (291)
|++||++++++||
T Consensus 159 ~~~ea~~~~~~~l 171 (190)
T PF00227_consen 159 SLEEAIELALKAL 171 (190)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999999985
No 33
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.3e-32 Score=229.03 Aligned_cols=159 Identities=19% Similarity=0.283 Sum_probs=148.8
Q ss_pred eeEEEEecccEEEEEeeccCCC-cccCCCCcceEEEecCcEEEEeecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHH
Q psy8777 126 VTSVAVKGVDTAVVATEKKVPD-SLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLC 204 (291)
Q Consensus 126 ~~~igi~~~~~vvl~~d~~~~~-~l~~~~~~~kI~~i~~~~~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~ 204 (291)
++++|++++++||+++|++.+. .++.+++.+|||+|+++++++++|..+|++.+.+.++.+++.|++.++++++++.++
T Consensus 1 ~t~igi~~~dgVvla~D~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~a 80 (188)
T cd03762 1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAA 80 (188)
T ss_pred CeEEEEEECCeEEEEEcccccCCceEEcCCcccEEEccCCEEEEecccHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHH
Confidence 3789999999999999999985 566667889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECCCCceEeeeEEEecCCchHHHHHHHHhccCCCCCCHHHHH
Q psy8777 205 NRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKKKTNYTGDETI 284 (291)
Q Consensus 205 ~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~t~~eai 284 (291)
+.++.+++.+ .+|++++++|+|+|+++||+||.+||+|++.+++++++|+|+.+++++||+.|++ +||++||+
T Consensus 81 ~~l~~~~~~~-----~~~~~~~~ii~G~d~~~gp~ly~~d~~G~~~~~~~~~~G~g~~~~~~~Le~~~~~--~~s~~ea~ 153 (188)
T cd03762 81 SLFKNLCYNY-----KEMLSAGIIVAGWDEQNGGQVYSIPLGGMLIRQPFAIGGSGSTYIYGYVDANYKP--GMTLEECI 153 (188)
T ss_pred HHHHHHHHhc-----cccceeeEEEEEEcCCCCcEEEEECCCCCEEecCEEEEcccHHHHHHHHHhcCCC--CCCHHHHH
Confidence 9999998554 3789999999999975789999999999999999999999999999999999999 99999999
Q ss_pred HHHHhhC
Q psy8777 285 QLAISCL 291 (291)
Q Consensus 285 ~l~~~~l 291 (291)
+++++||
T Consensus 154 ~l~~~al 160 (188)
T cd03762 154 KFVKNAL 160 (188)
T ss_pred HHHHHHH
Confidence 9999986
No 34
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.2e-32 Score=229.29 Aligned_cols=158 Identities=20% Similarity=0.299 Sum_probs=147.7
Q ss_pred eeEEEEecccEEEEEeeccCCC-cccCCCCcceEEEecCcEEEEeecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHH
Q psy8777 126 VTSVAVKGVDTAVVATEKKVPD-SLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLC 204 (291)
Q Consensus 126 ~~~igi~~~~~vvl~~d~~~~~-~l~~~~~~~kI~~i~~~~~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~ 204 (291)
++++|++++||||+++|++.+. .++..++.+|||+|+++++++++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tt~igi~~~dgvvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (189)
T cd03763 1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSNLELHRLNTGRKPRVVTAL 80 (189)
T ss_pred CeEEEEEECCeEEEEEcCCcccCceEEcCCccceEEecCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 4789999999999999999985 456566789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECCCCceEeeeEEEecCCchHHHHHHHHhccCCCCCCHHHHH
Q psy8777 205 NRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKKKTNYTGDETI 284 (291)
Q Consensus 205 ~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~t~~eai 284 (291)
+.+++.++.| ..|++++++|+|||+ .||+||.+||+|++.+++++++|+++.+++++||++|++ +||++||+
T Consensus 81 ~~l~~~l~~~-----~~p~~v~~ivaG~d~-~g~~ly~~d~~G~~~~~~~~a~G~~~~~~~~~L~~~~~~--~ls~~ea~ 152 (189)
T cd03763 81 TMLKQHLFRY-----QGHIGAALVLGGVDY-TGPHLYSIYPHGSTDKLPFVTMGSGSLAAMSVLEDRYKP--DMTEEEAK 152 (189)
T ss_pred HHHHHHHHHc-----CCccceeEEEEeEcC-CCCEEEEECCCCCEEecCEEEEcCCHHHHHHHHHhhcCC--CCCHHHHH
Confidence 9999998655 249999999999996 689999999999999999999999999999999999999 99999999
Q ss_pred HHHHhhC
Q psy8777 285 QLAISCL 291 (291)
Q Consensus 285 ~l~~~~l 291 (291)
+++++||
T Consensus 153 ~l~~~~l 159 (189)
T cd03763 153 KLVCEAI 159 (189)
T ss_pred HHHHHHH
Confidence 9999985
No 35
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=100.00 E-value=8.5e-32 Score=224.35 Aligned_cols=162 Identities=35% Similarity=0.648 Sum_probs=152.1
Q ss_pred eeEEEEecccEEEEEeeccCCCcccC-CCCcceEEEecCcEEEEeecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHH
Q psy8777 126 VTSVAVKGVDTAVVATEKKVPDSLVD-PKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLC 204 (291)
Q Consensus 126 ~~~igi~~~~~vvl~~d~~~~~~l~~-~~~~~kI~~i~~~~~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~ 204 (291)
++++|++++++|++++|++.+.++.. .++.+|||.|+++++++++|..+|.+.+.+.++.++..|++.++.+++++.++
T Consensus 1 tt~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (182)
T cd01906 1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALA 80 (182)
T ss_pred CcEEEEEeCCEEEEEEecccCCcCeecCCCcceEEEECCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 37899999999999999999865544 66789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECCCCceEeeeEEEecCCchHHHHHHHHhccCCCCCCHHHHH
Q psy8777 205 NRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKKKTNYTGDETI 284 (291)
Q Consensus 205 ~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~t~~eai 284 (291)
+.++++++.++++ .||++++++++|+|++++|+||.+||+|++.+++++++|+|+.+++++||+.|++ +||.+||+
T Consensus 81 ~~l~~~~~~~~~~--~~p~~~~~lv~G~d~~~~~~Ly~id~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~--~~s~~ea~ 156 (182)
T cd01906 81 KLLANLLYEYTQS--LRPLGVSLLVAGVDEEGGPQLYSVDPSGSYIEYKATAIGSGSQYALGILEKLYKP--DMTLEEAI 156 (182)
T ss_pred HHHHHHHHHhCCC--ccChheEEEEEEEeCCCCcEEEEECCCCCEeeccEEEECCCcHHHHHHHHHHccC--CCCHHHHH
Confidence 9999999888664 7999999999999975789999999999999999999999999999999999999 99999999
Q ss_pred HHHHhhC
Q psy8777 285 QLAISCL 291 (291)
Q Consensus 285 ~l~~~~l 291 (291)
+++++||
T Consensus 157 ~l~~~~l 163 (182)
T cd01906 157 ELALKAL 163 (182)
T ss_pred HHHHHHH
Confidence 9999985
No 36
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=100.00 E-value=5e-32 Score=234.95 Aligned_cols=163 Identities=20% Similarity=0.311 Sum_probs=149.4
Q ss_pred hcCCceeEEEEecccEEEEEeeccCC-CcccCCCCcceEEEecCcEEEEeecccccHHHHHHHHHHHHHHhHhhhCCCCC
Q psy8777 121 INQGGVTSVAVKGVDTAVVATEKKVP-DSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMP 199 (291)
Q Consensus 121 ~~~g~~~~igi~~~~~vvl~~d~~~~-~~l~~~~~~~kI~~i~~~~~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s 199 (291)
+.+|+ +++|++++|+|||++|++.+ +.++.+++.+|||+|+++++++++|+.+|++.+.++++.+++.|++.++++|+
T Consensus 36 ~~~G~-T~IgIk~kdgVvlAaD~r~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~g~~is 114 (247)
T PTZ00488 36 FAHGT-TTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEINPTLLGTMAGGAADCSFWERELAMQCRLYELRNGELIS 114 (247)
T ss_pred cCCCc-eEEEEEeCCEEEEEEecCcccCCEEEcCCcCceEEcCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 34566 99999999999999999988 57777778899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECCCCceEeeeEEEecCCchHHHHHHHHhccCCCCCC
Q psy8777 200 IDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKKKTNYT 279 (291)
Q Consensus 200 ~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~t 279 (291)
++.+++.|+.+++.+ +..|+.++++|+|||+ .||+||.+||+|++.+++++++|+|+.+++++||+.|++ +||
T Consensus 115 v~~la~~ls~~l~~~----R~~~~~v~~iiaG~D~-~gp~Ly~vDp~Gs~~~~~~~a~G~gs~~~~~~Le~~~k~--dms 187 (247)
T PTZ00488 115 VAAASKILANIVWNY----KGMGLSMGTMICGWDK-KGPGLFYVDNDGTRLHGNMFSCGSGSTYAYGVLDAGFKW--DLN 187 (247)
T ss_pred HHHHHHHHHHHHHhc----CCCCeeEEEEEEEEeC-CCCEEEEEcCCcceeecCCEEEccCHHHHHHHHHhcCcC--CCC
Confidence 999999999998544 2235566689999996 689999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHhhC
Q psy8777 280 GDETIQLAISCL 291 (291)
Q Consensus 280 ~~eai~l~~~~l 291 (291)
.|||++++++||
T Consensus 188 ~eEai~l~~kal 199 (247)
T PTZ00488 188 DEEAQDLGRRAI 199 (247)
T ss_pred HHHHHHHHHHHH
Confidence 999999999985
No 37
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.9e-32 Score=232.38 Aligned_cols=206 Identities=26% Similarity=0.413 Sum_probs=141.9
Q ss_pred CccceeeeeCCCCcchhhhHHHHHHhcCCceEEEEecCCeEEEEEeccCCCCccCCCCcceeEeecCcEEEEEeccccch
Q psy8777 8 GFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVMTGMQADS 87 (291)
Q Consensus 8 ~yd~~~~~fsp~g~~~q~eya~~av~~g~~t~vgi~~~~~vv~a~~~~~~~~l~~~~~~~ki~~i~~~~~~~~~G~~~D~ 87 (291)
+||+++|+|||||||+|+|||+||+++|+ |+|||+++||||||+|+|.++++..+++.+||++|++|+++++||+.+|+
T Consensus 1 ~y~~~~~~fsp~G~l~Q~eya~~av~~G~-t~igik~~dgvvla~d~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~ 79 (211)
T cd03756 1 GYDRAITVFSPDGRLYQVEYAREAVKRGT-TALGIKCKEGVVLAVDKRITSKLVEPESIEKIYKIDDHVGAATSGLVADA 79 (211)
T ss_pred CCCCCCceECCCCeEhHHHHHHHHHHcCC-CEEEEEECCEEEEEEeccCCCcccCCCccceEEEEcCCEEEEEecCHHHH
Confidence 59999999999999999999999999996 99999999999999999998888877788999999999999999999999
Q ss_pred hhhhhhhcccccccccccCCCCchhhHHHHHhhhc---CCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCc
Q psy8777 88 RYQVQRARAGFDRHITIFSPEGRLYQVEYAFKAIN---QGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPT 164 (291)
Q Consensus 88 ~~~~~~~~~~yd~~~~~~sp~grl~qve~~~~~~~---~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~ 164 (291)
+.+++.++.+.......+. +...++.....+. +..+...+.+|....++.+. ++ +.+|+||.+||.
T Consensus 80 ~~l~~~l~~~~~~~~~~~~---~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~ll~G-------~D-~~~~~ly~vd~~ 148 (211)
T cd03756 80 RVLIDRARVEAQIHRLTYG---EPIDVEVLVKKICDLKQQYTQHGGVRPFGVALLIAG-------VD-DGGPRLFETDPS 148 (211)
T ss_pred HHHHHHHHHHHHHHHHHHC---CCCCHHHHHHHHHHHHHHhcCCCCeechhEEEEEEE-------Ee-CCCCEEEEECCC
Confidence 9999988843221111111 1111111111111 11112235677776666654 44 357999999999
Q ss_pred EEEE-eecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEE
Q psy8777 165 VGCV-MTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILIS 231 (291)
Q Consensus 165 ~~~~-~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G 231 (291)
|.+. ....+.+......+..++. .+.++|+.+++.+.+.+.+.....+ ...+-.+++.++.
T Consensus 149 G~~~~~~~~a~G~g~~~~~~~Le~-----~~~~~m~~~ea~~l~~~~l~~~~~~-~~~~~~~~v~ii~ 210 (211)
T cd03756 149 GAYNEYKATAIGSGRQAVTEFLEK-----EYKEDMSLEEAIELALKALYAALEE-NETPENVEIAYVT 210 (211)
T ss_pred CCeeeeEEEEECCCCHHHHHHHHh-----hccCCCCHHHHHHHHHHHHHHHhcc-cCCCCcEEEEEEe
Confidence 9752 2222222443333344443 3445899999999777766555443 2355566666553
No 38
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=8.9e-32 Score=225.71 Aligned_cols=160 Identities=20% Similarity=0.357 Sum_probs=149.3
Q ss_pred eeEEEEecccEEEEEeeccCCCcccC-CCCcceEEEecCcEEEEeecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHH
Q psy8777 126 VTSVAVKGVDTAVVATEKKVPDSLVD-PKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLC 204 (291)
Q Consensus 126 ~~~igi~~~~~vvl~~d~~~~~~l~~-~~~~~kI~~i~~~~~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~ 204 (291)
++++|+++++||||++|++.+.++.. .++.+|||+|+++++++++|..+|++.+.++++.++..|++.++++++++.++
T Consensus 1 tt~i~i~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (189)
T cd01912 1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELSVKAAA 80 (189)
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEEcCCcCcEEEccCCEEEEccccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 37899999999999999999866554 67789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECCCCceEeeeEEEecCCchHHHHHHHHhccCCCCCCHHHHH
Q psy8777 205 NRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKKKTNYTGDETI 284 (291)
Q Consensus 205 ~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~t~~eai 284 (291)
+.++++++.+++ +|++++++|+|+|++++|+||.+||+|++.+++++++|+++.+++++||+.|++ +||++||+
T Consensus 81 ~~l~~~~~~~~~----~P~~~~~iv~G~d~~~~~~l~~id~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~--~~s~~ea~ 154 (189)
T cd01912 81 NLLSNILYSYRG----FPYYVSLIVGGVDKGGGPFLYYVDPLGSLIEAPFVATGSGSKYAYGILDRGYKP--DMTLEEAV 154 (189)
T ss_pred HHHHHHHHhcCC----CCeEEEEEEEEEcCCCCeEEEEECCCCCeEecCEEEEcccHHHHHHHHHhccCC--CCCHHHHH
Confidence 999999855432 899999999999976789999999999999999999999999999999999999 99999999
Q ss_pred HHHHhhC
Q psy8777 285 QLAISCL 291 (291)
Q Consensus 285 ~l~~~~l 291 (291)
+++++||
T Consensus 155 ~~~~~~l 161 (189)
T cd01912 155 ELVKKAI 161 (189)
T ss_pred HHHHHHH
Confidence 9999885
No 39
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=6.1e-32 Score=232.48 Aligned_cols=207 Identities=26% Similarity=0.416 Sum_probs=141.2
Q ss_pred CCccceeeeeCCCCcchhhhHHHHHHhcCCceEEEEecCCeEEEEEeccCCCCccCCCCcceeEeecCcEEEEEeccccc
Q psy8777 7 AGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVMTGMQAD 86 (291)
Q Consensus 7 ~~yd~~~~~fsp~g~~~q~eya~~av~~g~~t~vgi~~~~~vv~a~~~~~~~~l~~~~~~~ki~~i~~~~~~~~~G~~~D 86 (291)
.+||+++|+|||||||+|||||++|+++|+ |+|||+++||||||+|+|.++++..+++.+||+.|++|++|++||+.+|
T Consensus 1 ~~~~~~~~~f~p~Grl~Qieya~~av~~G~-tvigi~~~dgvvlaad~r~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D 79 (224)
T TIGR03633 1 MGYDRAITVFSPDGRLYQVEYAREAVKRGT-TAVGIKTKDGVVLAVDKRITSKLVEPSSIEKIFKIDDHIGAATSGLVAD 79 (224)
T ss_pred CCCCCCCceECCCCeEeHHHHHHHHHHcCC-CEEEEEECCEEEEEEeccCCccccCCCccceEEEECCCEEEEEeecHHh
Confidence 369999999999999999999999999996 9999999999999999999888887788899999999999999999999
Q ss_pred hhhhhhhhcccccccccccCCCCchhhHHHHHhhhc---CCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecC
Q psy8777 87 SRYQVQRARAGFDRHITIFSPEGRLYQVEYAFKAIN---QGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTP 163 (291)
Q Consensus 87 ~~~~~~~~~~~yd~~~~~~sp~grl~qve~~~~~~~---~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~ 163 (291)
++.+++.++.+.......+ |+...+....+.+. +..+...+.+|..+.++.+. ++ +.+|+||.+||
T Consensus 80 ~~~l~~~~~~~~~~~~~~~---~~~~~~~~la~~ls~~l~~~~~~~~~rP~~v~~ll~G-------~d-~~~~~Ly~~D~ 148 (224)
T TIGR03633 80 ARVLIDRARIEAQINRLTY---GEPIDVETLAKKICDLKQQYTQHGGVRPFGVALLIAG-------VD-DGGPRLFETDP 148 (224)
T ss_pred HHHHHHHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHHHHhcCCCCccccceEEEEEE-------Ee-CCcCEEEEECC
Confidence 9999998874322111111 11111111111111 11112224556666666554 44 45799999999
Q ss_pred cEEEE-eecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEE
Q psy8777 164 TVGCV-MTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILIS 231 (291)
Q Consensus 164 ~~~~~-~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G 231 (291)
.|.+. ....+.+..+......++. .++++++.+++++.+.+.+..... ....+-++++.++.
T Consensus 149 ~G~~~~~~~~a~G~g~~~~~~~L~~-----~~~~~~~~eeai~l~~~al~~~~~-d~~~~~~i~i~ii~ 211 (224)
T TIGR03633 149 SGALLEYKATAIGAGRQAVTEFLEK-----EYREDLSLDEAIELALKALYSAVE-DKLTPENVEVAYIT 211 (224)
T ss_pred CCCeecceEEEECCCCHHHHHHHHH-----hccCCCCHHHHHHHHHHHHHHHhc-ccCCCCcEEEEEEE
Confidence 99752 1122222333333333332 345689999999977666644433 34556667776664
No 40
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.98 E-value=1.3e-31 Score=228.75 Aligned_cols=204 Identities=23% Similarity=0.381 Sum_probs=139.5
Q ss_pred ccceeeeeCCCCcchhhhHHHHHHhcCCceEEEEecCCeEEEEEeccCCCCccCCCCcceeEeecCcEEEEEeccccchh
Q psy8777 9 FDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVMTGMQADSR 88 (291)
Q Consensus 9 yd~~~~~fsp~g~~~q~eya~~av~~g~~t~vgi~~~~~vv~a~~~~~~~~l~~~~~~~ki~~i~~~~~~~~~G~~~D~~ 88 (291)
||+++|+|||||||+|||||++|+++|+ |+|||+++||||||+|+|.++++..+++.+||++|++|++|+++|+.+|+|
T Consensus 1 ~~~~~~~f~p~G~~~Q~eya~~a~~~G~-t~igik~~dgVvlaad~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~ 79 (213)
T cd03753 1 YDRGVNTFSPEGRLFQVEYAIEAIKLGS-TAIGIKTKEGVVLAVEKRITSPLMEPSSVEKIMEIDDHIGCAMSGLIADAR 79 (213)
T ss_pred CCCCCccCCCCCeEhHHHHHHHHHhcCC-CEEEEEeCCEEEEEEecccCCcCcCCCccceEEEEcCCEEEEEecCHHHHH
Confidence 8999999999999999999999999995 999999999999999999988888777789999999999999999999999
Q ss_pred hhhhhhcccc-------cccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEe
Q psy8777 89 YQVQRARAGF-------DRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSL 161 (291)
Q Consensus 89 ~~~~~~~~~y-------d~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i 161 (291)
.+++.+|.+. ++.+++-.....+..+-+. ............+|..+.++.+. ++ +.+|+||.+
T Consensus 80 ~l~~~~r~~~~~~~~~~~~~i~~~~~~~~ls~~~~~--~~~~~~~~~~~~rP~~v~~ii~G-------~D-~~gp~Ly~v 149 (213)
T cd03753 80 TLIDHARVEAQNHRFTYNEPMTVESVTQAVSDLALQ--FGEGDDGKKAMSRPFGVALLIAG-------VD-ENGPQLFHT 149 (213)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH--HhCcccccccccccceEEEEEEE-------Ec-CCCCEEEEE
Confidence 9999887442 2222221111111111111 11111101234567776666654 44 467999999
Q ss_pred cCcEEEE-eecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeE
Q psy8777 162 TPTVGCV-MTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMIL 229 (291)
Q Consensus 162 ~~~~~~~-~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li 229 (291)
||.|.+. ....+.+......+..++. .++++|+.+++++.+.+.+..... ....+-.+++.+
T Consensus 150 d~~G~~~~~~~~a~G~~~~~~~~~L~~-----~~~~~ls~eeai~l~~~~l~~~~~-~~~~~~~~ei~~ 212 (213)
T cd03753 150 DPSGTFTRCDAKAIGSGSEGAQSSLQE-----KYHKDMTLEEAEKLALSILKQVME-EKLNSTNVELAT 212 (213)
T ss_pred CCCCCeecccEEEECCCcHHHHHHHHh-----hccCCCCHHHHHHHHHHHHHHHhc-ccCCCCcEEEEE
Confidence 9999753 2222222444333333333 345589999999976666644422 234555555543
No 41
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=99.97 E-value=3.9e-31 Score=225.17 Aligned_cols=203 Identities=28% Similarity=0.433 Sum_probs=136.8
Q ss_pred ccceeeeeCCCCcchhhhHHHHHHhcCCceEEEEecCCeEEEEEeccCCCCccCCCCcceeEeecCcEEEEEeccccchh
Q psy8777 9 FDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVMTGMQADSR 88 (291)
Q Consensus 9 yd~~~~~fsp~g~~~q~eya~~av~~g~~t~vgi~~~~~vv~a~~~~~~~~l~~~~~~~ki~~i~~~~~~~~~G~~~D~~ 88 (291)
||+++|+|||||||+|||||+||+++|+ |+||++++||||||+|+|.+.++...++.+|||+|+++++++++|+.+|++
T Consensus 1 ~~~~~~~f~~~G~~~q~eya~~~~~~G~-tvigi~~~dgVvlaaD~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~ 79 (209)
T cd01911 1 YDRSITTFSPEGRLFQVEYALEAVKNGS-TAVGIKGKDGVVLAVEKKVTSKLLDPSSVEKIFKIDDHIGCAVAGLTADAR 79 (209)
T ss_pred CCCCCccCCCCCEEeHHHHHHHHHHcCC-CEEEEEECCEEEEEEEecCCccccCCcccceEEEecCCeEEEeccCcHhHH
Confidence 8999999999999999999999999995 999999999999999999988877667789999999999999999999999
Q ss_pred hhhhhhcccccccccccCCCCchhhHHHHHhhhc---CCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcE
Q psy8777 89 YQVQRARAGFDRHITIFSPEGRLYQVEYAFKAIN---QGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTV 165 (291)
Q Consensus 89 ~~~~~~~~~yd~~~~~~sp~grl~qve~~~~~~~---~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~ 165 (291)
.+.+.++.+.......+ |+-..++...+.+. +..+...+.+|....++.+. ++++.+|+||.+||.|
T Consensus 80 ~l~~~l~~~~~~~~~~~---g~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~iv~G-------~d~~~~~~Ly~iD~~G 149 (209)
T cd01911 80 VLVNRARVEAQNYRYTY---GEPIPVEVLVKRIADLAQVYTQYGGVRPFGVSLLIAG-------YDEEGGPQLYQTDPSG 149 (209)
T ss_pred HHHHHHHHHHHHHHHHh---CCCCCHHHHHHHHHHHHHHHhcccCccChhheEEEEE-------EcCCCCcEEEEECCCC
Confidence 99998873321111011 11111111111111 11112234566665555554 4545589999999999
Q ss_pred EEE-eecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeee
Q psy8777 166 GCV-MTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMI 228 (291)
Q Consensus 166 ~~~-~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~l 228 (291)
.+. ....+.+..+......++. .++++|+.+++.+.+.+.+.....+.- .+..+++.
T Consensus 150 ~~~~~~~~a~G~g~~~~~~~L~~-----~~~~~ms~~ea~~l~~~~l~~~~~~d~-~~~~~~i~ 207 (209)
T cd01911 150 TYFGYKATAIGKGSQEAKTFLEK-----RYKKDLTLEEAIKLALKALKEVLEEDK-KAKNIEIA 207 (209)
T ss_pred CeeeeeEEEeCCCcHHHHHHHHH-----hcccCCCHHHHHHHHHHHHHHHHhccC-CCCcEEEE
Confidence 753 1112222333333333333 244589999999977776654444433 44454443
No 42
>KOG0177|consensus
Probab=99.96 E-value=3e-29 Score=199.78 Aligned_cols=161 Identities=19% Similarity=0.275 Sum_probs=152.2
Q ss_pred eEEEEecccEEEEEeeccCC-CcccCCCCcceEEEecCcEEEEeecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHHH
Q psy8777 127 TSVAVKGVDTAVVATEKKVP-DSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCN 205 (291)
Q Consensus 127 ~~igi~~~~~vvl~~d~~~~-~~l~~~~~~~kI~~i~~~~~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~~ 205 (291)
+.+|+++.|.|++|+|+... +.++..++..|++.++++..+.++|..+|.-.+.+++....+.|+++++.++|++.+++
T Consensus 3 ~llGIkg~dfvilAsDt~~~~si~~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~aah 82 (200)
T KOG0177|consen 3 TLLGIKGPDFVILASDTSAARSILVLKDDHDKIHRLSDHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAAAH 82 (200)
T ss_pred eEEEeecCCEEEEeecchhhcceEEecccccceEEeccceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHHHH
Confidence 68999999999999999876 55666778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECCCCceEeeeEEEecCCchHHHHHHHHhccCCCCCCHHHHHH
Q psy8777 206 RIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKKKTNYTGDETIQ 285 (291)
Q Consensus 206 ~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~t~~eai~ 285 (291)
++++-++.+.+ ..+||.|+++++|+|++.||.||++|..|+..+.++++.|.++.++.++|+++|+| +||.|||++
T Consensus 83 FtR~~La~~LR--sr~~yqV~~LvaGYd~~~gp~L~~iDyla~~~~vpy~~hGy~~~f~~sIlDr~Y~p--dmt~eea~~ 158 (200)
T KOG0177|consen 83 FTRRELAESLR--SRTPYQVNILVAGYDPEEGPELYYIDYLATLVSVPYAAHGYGSYFCLSILDRYYKP--DMTIEEALD 158 (200)
T ss_pred HHHHHHHHHHh--cCCCceEEEEEeccCCCCCCceeeehhhhhcccCCcccccchhhhhHHHHHhhhCC--CCCHHHHHH
Confidence 99999988854 35899999999999998899999999999999999999999999999999999999 999999999
Q ss_pred HHHhhC
Q psy8777 286 LAISCL 291 (291)
Q Consensus 286 l~~~~l 291 (291)
+..+|+
T Consensus 159 lmkKCv 164 (200)
T KOG0177|consen 159 LMKKCV 164 (200)
T ss_pred HHHHHH
Confidence 999995
No 43
>KOG0179|consensus
Probab=99.93 E-value=5.3e-25 Score=178.04 Aligned_cols=167 Identities=22% Similarity=0.352 Sum_probs=151.8
Q ss_pred hhcCCceeEEEEecccEEEEEeeccCCCc-ccCCCCcceEEEecCcEEEEeecccccHHHHHHHHHHHHHHhHhhhCCCC
Q psy8777 120 AINQGGVTSVAVKGVDTAVVATEKKVPDS-LVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSM 198 (291)
Q Consensus 120 ~~~~g~~~~igi~~~~~vvl~~d~~~~~~-l~~~~~~~kI~~i~~~~~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~ 198 (291)
+..+|+ +++||.+.|..|+|+|+|.+.+ .+..++.+|||++.++..+..+|+.+|...+...++.+.+.|++.++..|
T Consensus 25 Y~~NGG-T~vaIaG~dFavvA~DTR~s~gy~I~sR~~~Ki~~l~D~~vl~~sGF~aD~l~L~k~i~~r~~~Y~~~h~k~m 103 (235)
T KOG0179|consen 25 YEDNGG-TTVAIAGEDFAVVAGDTRMSSGYNINSRDQSKIFKLGDNIVLGSSGFYADTLALVKVIKSRIKQYEHDHNKKM 103 (235)
T ss_pred cccCCc-eEEEEcCCceEEEecccccccceeeeccccchheeccCceEEecccchhhHHHHHHHHHHHHHHHhhcccccc
Confidence 456788 8899999999999999999854 35567889999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECCCCceEeeeEEEecCCchHHHHHHHHhccC----
Q psy8777 199 PIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKK---- 274 (291)
Q Consensus 199 s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~---- 274 (291)
+++.+++.|+.++ |. .++.||.+..+++|+|+++++.+|+.||.|++.+..+.|.|+++..++|+|+.....
T Consensus 104 s~~s~A~lls~~L--Y~--kRFFPYYv~~ilaGiDeeGKG~VySyDPvGsyer~~~~AgGsa~~mI~PfLDnQi~~kn~~ 179 (235)
T KOG0179|consen 104 SIHSAAQLLSTIL--YS--KRFFPYYVFNILAGIDEEGKGAVYSYDPVGSYERVTCRAGGSAASMIQPFLDNQIGHKNQN 179 (235)
T ss_pred cHHHHHHHHHHHH--hh--cccccceeeeeeecccccCceeEEeecCCcceeeeeeecCCcchhhhhhhhhhhccCcCcc
Confidence 9999999999999 74 468999999999999998889999999999999999999999999999999976542
Q ss_pred -----CCCCCHHHHHHHHHhhC
Q psy8777 275 -----KTNYTGDETIQLAISCL 291 (291)
Q Consensus 275 -----~~~~t~~eai~l~~~~l 291 (291)
...+|+|||+.|+.+++
T Consensus 180 ~e~~~~~~Ls~e~ai~lv~d~F 201 (235)
T KOG0179|consen 180 LENAERTPLSLERAIRLVKDAF 201 (235)
T ss_pred cccCcccccCHHHHHHHHHHHh
Confidence 25689999999998864
No 44
>KOG0174|consensus
Probab=99.93 E-value=1.7e-25 Score=178.83 Aligned_cols=160 Identities=18% Similarity=0.298 Sum_probs=147.2
Q ss_pred ceeEEEEecccEEEEEeeccCC-CcccCCCCcceEEEecCcEEEEeecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHH
Q psy8777 125 GVTSVAVKGVDTAVVATEKKVP-DSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQL 203 (291)
Q Consensus 125 ~~~~igi~~~~~vvl~~d~~~~-~~l~~~~~~~kI~~i~~~~~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l 203 (291)
+|+++|+.+++|||+++|.|.+ +..+.++-.+||-+|.+++.|+-+|.++|.|.+.+.++..+..|..+++.++++..+
T Consensus 19 GTTImAv~y~gGVvlGaDSRTs~GayvanRvtDKlT~itD~i~cCRSGSAADtQaiaD~~~Y~L~~~~~q~~~~p~v~~a 98 (224)
T KOG0174|consen 19 GTTIMAVEYDGGVVLGADSRTSTGAYVANRVTDKLTPITDNIYCCRSGSAADTQAIADIVRYHLELYTIQENKPPLVHTA 98 (224)
T ss_pred CceEEEEEEcCcEEEeccCCccchHHHHhhhcccceeccccEEEecCCchhhHHHHHHHHHHHHHHhhhhcCCCchHHHH
Confidence 4599999999999999999998 455666778999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECCCCceEeeeEEEecCCchHHHHHHHHhccCCCCCCHHHH
Q psy8777 204 CNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKKKTNYTGDET 283 (291)
Q Consensus 204 ~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~t~~ea 283 (291)
++..+++. |.. ...+...++|+|||+..|.++|.+...|+..+.+++.-|+||.+++++++..||+ +||+||+
T Consensus 99 A~l~r~~~--Y~~---re~L~AgliVAGwD~~~gGqVY~iplGG~l~rq~~aIgGSGStfIYGf~D~~~r~--nMt~EE~ 171 (224)
T KOG0174|consen 99 ASLFREIC--YNY---REMLSAGLIVAGWDEKEGGQVYSIPLGGSLTRQPFAIGGSGSTFIYGFCDANWRP--NMTLEEC 171 (224)
T ss_pred HHHHHHHH--HhC---HHhhhcceEEeecccccCceEEEeecCceEeecceeeccCCceeeeeeehhhcCC--CCCHHHH
Confidence 99999998 422 2347788999999998899999999999999999999999999999999999999 9999999
Q ss_pred HHHHHhhC
Q psy8777 284 IQLAISCL 291 (291)
Q Consensus 284 i~l~~~~l 291 (291)
+.+..+|+
T Consensus 172 ~~fvk~Av 179 (224)
T KOG0174|consen 172 VRFVKNAV 179 (224)
T ss_pred HHHHHHHH
Confidence 99998874
No 45
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=99.93 E-value=7.3e-24 Score=172.23 Aligned_cols=159 Identities=31% Similarity=0.475 Sum_probs=149.3
Q ss_pred eEEEEecccEEEEEeeccCCCcccC-CCCcceEEEecCcEEEEeecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHHH
Q psy8777 127 TSVAVKGVDTAVVATEKKVPDSLVD-PKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCN 205 (291)
Q Consensus 127 ~~igi~~~~~vvl~~d~~~~~~l~~-~~~~~kI~~i~~~~~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~~ 205 (291)
+++|+++++++++++|++.+.++.. .....|++.++++..++++|..+|.+.+..+++.++..+++.++.++++..+++
T Consensus 2 t~i~i~~~~gvila~d~~~~~~~~~~~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (164)
T cd01901 2 TSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPISVVALAK 81 (164)
T ss_pred cEEEEEeCCEEEEEEecccCccCeecCCCcceEEEecCCeEEEEecChHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 7899999999999999999855543 567899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECCCCceEee-eEEEecCCchHHHHHHHHhccCCCCCCHHHHH
Q psy8777 206 RIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSF-KAVSVGVKTTEANSYLEKKFKKKTNYTGDETI 284 (291)
Q Consensus 206 ~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~~G~~~~~-~~~a~G~gs~~~~~~Le~~~~~~~~~t~~eai 284 (291)
.+++.++.+++ .+|++++++++|+|+ ++|+||.+||.|.+.++ +++++|.++..+.++|++.|++ +|+.+|++
T Consensus 82 ~~~~~~~~~~~---~~p~~~~~iiag~~~-~~~~l~~id~~g~~~~~~~~~~~G~~~~~~~~~l~~~~~~--~~~~~~~~ 155 (164)
T cd01901 82 ELAKLLQVYTQ---GRPFGVNLIVAGVDE-GGGNLYYIDPSGPVIENPGAVATGSRSQRAKSLLEKLYKP--DMTLEEAV 155 (164)
T ss_pred HHHHHHHHhcC---CCCcceEEEEEEEcC-CCCEEEEECCCcCEeecCcEEEECCCCHHHHHHHHHHhcC--CCCHHHHH
Confidence 99999987755 699999999999997 78999999999999999 9999999999999999999999 99999999
Q ss_pred HHHHhhC
Q psy8777 285 QLAISCL 291 (291)
Q Consensus 285 ~l~~~~l 291 (291)
+++.+||
T Consensus 156 ~~~~~~l 162 (164)
T cd01901 156 ELALKAL 162 (164)
T ss_pred HHHHHHH
Confidence 9999886
No 46
>KOG0185|consensus
Probab=99.92 E-value=2.3e-25 Score=183.11 Aligned_cols=169 Identities=19% Similarity=0.250 Sum_probs=151.8
Q ss_pred hhcCCceeEEEEecccEEEEEeeccCC-CcccCCCCcceEEEecCcEEEEeecccccHHHHHHHHHHHHHHhH-hhhCCC
Q psy8777 120 AINQGGVTSVAVKGVDTAVVATEKKVP-DSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFK-YKHGYS 197 (291)
Q Consensus 120 ~~~~g~~~~igi~~~~~vvl~~d~~~~-~~l~~~~~~~kI~~i~~~~~~~~sG~~~D~~~~~~~~~~e~~~~~-~~~~~~ 197 (291)
....|+ +++|+++++|||+++|+..+ +++...++.+|||+++++..++++|..+|.+.+.+.+.....+.+ +..+..
T Consensus 37 p~vTGT-SVla~ky~~GVviaaD~lgSYGslaR~~nVeRi~kVgdntllG~sGdisD~Q~i~r~L~~l~iedn~~~Dg~~ 115 (256)
T KOG0185|consen 37 PIVTGT-SVLALKYKDGVVIAADTLGSYGSLARYKNVERIFKVGDNTLLGASGDISDFQYIQRVLEQLVIEDNRLDDGQS 115 (256)
T ss_pred ceeccc-eEEEEEecCceEEEecccccchhhhhhcCceeeEEecCceEEecCccHHHHHHHHHHHHHHHhcccccccccc
Confidence 334455 99999999999999999998 777777889999999999999999999999999887765555443 455589
Q ss_pred CCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECCCCceEeeeEEEecCCchHHHHHHHHhccC-CC
Q psy8777 198 MPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKK-KT 276 (291)
Q Consensus 198 ~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~-~~ 276 (291)
+.|+.++++|.+++ |.+++++.|+|.+++|+|+|+++.|+|-.+|..|..++.+..|+|.|..++.++|++.|++ ..
T Consensus 116 l~Pk~ih~yltrvl--Y~rRsKmnPlwntlvVgGv~~~g~~~lg~V~~~G~~Y~~~~vATGfg~hLa~P~lR~~~~~k~~ 193 (256)
T KOG0185|consen 116 LGPKAIHSYLTRVL--YARRSKMNPLWNTLVVGGVDNTGEPFLGYVDLLGVAYESPVVATGFGAHLALPLLRDEWEKKGE 193 (256)
T ss_pred cChHHHHHHHHHHH--HHhhhccCchhhheeEeeecCCCCeeEEEEeeccccccCchhhhhhHHHhhhHHHHHhhhccch
Confidence 99999999999999 9999999999999999999987779999999999999999999999999999999999993 46
Q ss_pred CCCHHHHHHHHHhhC
Q psy8777 277 NYTGDETIQLAISCL 291 (291)
Q Consensus 277 ~~t~~eai~l~~~~l 291 (291)
+++.+||.+++.+||
T Consensus 194 ~~s~eeA~~li~~cM 208 (256)
T KOG0185|consen 194 DLSREEAEALIEKCM 208 (256)
T ss_pred hhHHHHHHHHHHHHH
Confidence 899999999999996
No 47
>KOG0173|consensus
Probab=99.92 E-value=6e-25 Score=182.43 Aligned_cols=161 Identities=20% Similarity=0.320 Sum_probs=146.6
Q ss_pred CCceeEEEEecccEEEEEeeccCC-CcccCCCCcceEEEecCcEEEEeecccccHHHHHHHHHHHHHHhHhhhCCCCCHH
Q psy8777 123 QGGVTSVAVKGVDTAVVATEKKVP-DSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPID 201 (291)
Q Consensus 123 ~g~~~~igi~~~~~vvl~~d~~~~-~~l~~~~~~~kI~~i~~~~~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~ 201 (291)
+.+|+++|+..+++||+++|+|.+ +..+.+++..||+.+.|+++|+.+|.++|...+...+-.+...+++..++.+.+-
T Consensus 35 kTGTtIvgv~~k~gvIlgADtRaT~G~IvaDKnC~KIH~ia~~IyccGAGtAADte~vt~m~ss~l~Lh~l~t~R~~rVv 114 (271)
T KOG0173|consen 35 KTGTTIVGVIFKDGVILGADTRATEGPIVADKNCEKIHFIAPNIYCCGAGTAADTEMVTRMISSNLELHRLNTGRKPRVV 114 (271)
T ss_pred ccCcEEEEEEeCCeEEEeecccccCCCeeecchhHHHhhcccceEEccCCchhhHHHHHHHHHHHHHHHHhccCCCCcee
Confidence 356699999999999999999998 4556677889999999999999999999999988888888899999999999988
Q ss_pred HHHHHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECCCCceEeeeEEEecCCchHHHHHHHHhccCCCCCCHH
Q psy8777 202 QLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKKKTNYTGD 281 (291)
Q Consensus 202 ~l~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~t~~ 281 (291)
.+.+.|++.+..|+ .-.+..++|+|+|. .|||||.+.|.|+....+|.++|+|+..++++||.+|++ ||++|
T Consensus 115 ~A~~mlkQ~LFrYq-----G~IgA~LiiGGvD~-TGpHLy~i~phGStd~~Pf~alGSGslaAmsvlEsr~k~--dlt~e 186 (271)
T KOG0173|consen 115 TALRMLKQHLFRYQ-----GHIGAALILGGVDP-TGPHLYSIHPHGSTDKLPFTALGSGSLAAMSVLESRWKP--DLTKE 186 (271)
T ss_pred eHHHHHHHHHHHhc-----CcccceeEEccccC-CCCceEEEcCCCCcCccceeeeccchHHHHHHHHHhcCc--ccCHH
Confidence 88889998886662 34789999999998 799999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHhhC
Q psy8777 282 ETIQLAISCL 291 (291)
Q Consensus 282 eai~l~~~~l 291 (291)
||++|+.+|+
T Consensus 187 ea~~Lv~eAi 196 (271)
T KOG0173|consen 187 EAIKLVCEAI 196 (271)
T ss_pred HHHHHHHHHH
Confidence 9999999874
No 48
>KOG0180|consensus
Probab=99.91 E-value=8e-24 Score=166.20 Aligned_cols=162 Identities=16% Similarity=0.300 Sum_probs=149.2
Q ss_pred CCceeEEEEecccEEEEEeeccCC-CcccCCCCcceEEEecCcEEEEeecccccHHHHHHHHHHHHHHhHhhhCCCCCHH
Q psy8777 123 QGGVTSVAVKGVDTAVVATEKKVP-DSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPID 201 (291)
Q Consensus 123 ~g~~~~igi~~~~~vvl~~d~~~~-~~l~~~~~~~kI~~i~~~~~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~ 201 (291)
+|+ +++|+++++||.+++|+|.. .......+.+|||++.|+.+++.+|++.|.+.+.++++...+.|+++.+++|.|+
T Consensus 7 nGg-~vvAM~gk~cvaIa~D~RlG~q~~tistdf~ki~~igdr~y~GL~glatDvqtl~~~~~fr~nLy~lre~R~i~P~ 85 (204)
T KOG0180|consen 7 NGG-SVVAMAGKNCVAIASDLRLGVQSQTISTDFQKIFKIGDRLYLGLTGLATDVQTLLERLRFRKNLYELREEREIKPE 85 (204)
T ss_pred cCc-eEEEEeCCceEEEEeccccceeeeeeeccchhheecCCeeEEeccccchhHHHHHHHHHHHHhHHHhhhhcccCcH
Confidence 577 99999999999999999997 3444456789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECCCCceEee-eEEEecCCchHHHHHHHHhccCCCCCCH
Q psy8777 202 QLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSF-KAVSVGVKTTEANSYLEKKFKKKTNYTG 280 (291)
Q Consensus 202 ~l~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~~G~~~~~-~~~a~G~gs~~~~~~Le~~~~~~~~~t~ 280 (291)
.+...++.++ |. .++.||-++.+|+|+|++++|++..+|..|+...- +|.+.|.++...++.+|..|+| ||..
T Consensus 86 ~~s~mvS~~l--Ye--kRfgpYf~~PvVAGl~~~~kPfIc~mD~IGc~~~~~DFVvsGTa~e~L~GmCE~ly~p--nmep 159 (204)
T KOG0180|consen 86 TFSSMVSSLL--YE--KRFGPYFTEPVVAGLDDDNKPFICGMDLIGCIDAPKDFVVSGTASEQLYGMCEALYEP--NMEP 159 (204)
T ss_pred HHHHHHHHHH--HH--hhcCCcccceeEeccCCCCCeeEeecccccCcCccCCeEEecchHHHHHHHHHHhcCC--CCCH
Confidence 9999999998 64 36889999999999999888999999999998775 6999999999999999999999 9999
Q ss_pred HHHHHHHHhhC
Q psy8777 281 DETIQLAISCL 291 (291)
Q Consensus 281 ~eai~l~~~~l 291 (291)
||+++.+.+||
T Consensus 160 d~LFetisQa~ 170 (204)
T KOG0180|consen 160 DELFETISQAL 170 (204)
T ss_pred HHHHHHHHHHH
Confidence 99999887764
No 49
>KOG0175|consensus
Probab=99.91 E-value=4.3e-24 Score=177.69 Aligned_cols=160 Identities=21% Similarity=0.320 Sum_probs=146.2
Q ss_pred ceeEEEEecccEEEEEeeccCC-CcccCCCCcceEEEecCcEEEEeecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHH
Q psy8777 125 GVTSVAVKGVDTAVVATEKKVP-DSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQL 203 (291)
Q Consensus 125 ~~~~igi~~~~~vvl~~d~~~~-~~l~~~~~~~kI~~i~~~~~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l 203 (291)
+||.+|+++++|||+++|.|.+ +.++......||.+|+|...-+++|-++|++..-+.+-.|+++|++.+++.++|..+
T Consensus 71 GTTTLAF~f~~GvivAvDSRAs~G~YIasqtv~KVIeIn~ylLGTmAGgAADCqfWer~L~kecRL~eLRnkeriSVsaA 150 (285)
T KOG0175|consen 71 GTTTLAFKFKGGVIVAVDSRASAGSYIASQTVKKVIEINPYLLGTMAGGAADCQFWERVLAKECRLHELRNKERISVSAA 150 (285)
T ss_pred CceEEEEEecCcEEEEEeccccccceeechhhceeeeechhhhhcccCcchhhHHHHHHHHHHHHHHHHhcCcceehHHH
Confidence 3488999999999999999998 566666778999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECCCCceEeeeEEEecCCchHHHHHHHHhccCCCCCCHHHH
Q psy8777 204 CNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKKKTNYTGDET 283 (291)
Q Consensus 204 ~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~t~~ea 283 (291)
.+.|++++.+| .+ -.+.+...|+|||+ .||.||.+|..|+...-+-+++|+|+.+++++|++.|++ ||+.|||
T Consensus 151 SKllsN~~y~Y---kG-mGLsmGtMi~G~Dk-~GP~lyYVDseG~Rl~G~~FSVGSGs~yAYGVLDsgYr~--dls~eEA 223 (285)
T KOG0175|consen 151 SKLLSNMVYQY---KG-MGLSMGTMIAGWDK-KGPGLYYVDSEGTRLSGDLFSVGSGSTYAYGVLDSGYRY--DLSDEEA 223 (285)
T ss_pred HHHHHHHHhhc---cC-cchhheeeEeeccC-CCCceEEEcCCCCEecCceEeecCCCceeEEeeccCCCC--CCCHHHH
Confidence 99999999555 22 34556669999998 799999999999999999999999999999999999999 9999999
Q ss_pred HHHHHhhC
Q psy8777 284 IQLAISCL 291 (291)
Q Consensus 284 i~l~~~~l 291 (291)
.+|+++|+
T Consensus 224 ~~L~rrAI 231 (285)
T KOG0175|consen 224 YDLARRAI 231 (285)
T ss_pred HHHHHHHH
Confidence 99999985
No 50
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=99.91 E-value=2.9e-23 Score=170.05 Aligned_cols=147 Identities=15% Similarity=0.131 Sum_probs=124.4
Q ss_pred eeEEEEecccEEEEEeeccCC-CcccCCCCcceEEEe-cCcEEEEeecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHH
Q psy8777 126 VTSVAVKGVDTAVVATEKKVP-DSLVDPKTVTNLYSL-TPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQL 203 (291)
Q Consensus 126 ~~~igi~~~~~vvl~~d~~~~-~~l~~~~~~~kI~~i-~~~~~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l 203 (291)
||++|++++++||+++|++.+ +.++..++.+||++| +++.+++++|..+|.+.+.+.++.+++.|+. ++ ++.+
T Consensus 2 tTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~KI~~i~~d~i~~~~aG~~aD~q~l~~~l~~~~~~y~~----~~-~~~~ 76 (172)
T PRK05456 2 TTILAVRRNGKVAIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEHQG----NL-LRAA 76 (172)
T ss_pred cEEEEEEECCEEEEEECCceEeCcEEEcCCCceEEEeCCCCEEEEEeccHHHHHHHHHHHHHHHHHccC----cc-HHHH
Confidence 489999999999999999998 666777788999999 9999999999999999999999999998882 22 4555
Q ss_pred HHHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECCCCceEee--eEEEecCCchHHHHHHHHhcc-CCCCCCH
Q psy8777 204 CNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSF--KAVSVGVKTTEANSYLEKKFK-KKTNYTG 280 (291)
Q Consensus 204 ~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~~G~~~~~--~~~a~G~gs~~~~~~Le~~~~-~~~~~t~ 280 (291)
++.++.++ .....+|+.++++++ |. |+||.+|+.|++.+. +++++|+|+.+++++||++|+ + +|
T Consensus 77 a~l~~~l~----~~~~~~~l~~~~lv~--d~---~~ly~id~~G~~~~~~~~~~a~GSGs~~a~g~ld~~y~~~--~m-- 143 (172)
T PRK05456 77 VELAKDWR----TDRYLRRLEAMLIVA--DK---EHSLIISGNGDVIEPEDGIIAIGSGGNYALAAARALLENT--DL-- 143 (172)
T ss_pred HHHHHHHH----hccCCCccEEEEEEE--cC---CcEEEECCCCcEeccCCCeEEEecCHHHHHHHHHHhhhcC--CC--
Confidence 55444432 122246888998884 43 699999999999777 799999999999999999999 9 99
Q ss_pred HHHHHHHHhhC
Q psy8777 281 DETIQLAISCL 291 (291)
Q Consensus 281 ~eai~l~~~~l 291 (291)
||++++++|+
T Consensus 144 -eA~~la~kai 153 (172)
T PRK05456 144 -SAEEIAEKAL 153 (172)
T ss_pred -CHHHHHHHHH
Confidence 9999999885
No 51
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=99.89 E-value=2.7e-22 Score=172.18 Aligned_cols=185 Identities=12% Similarity=0.085 Sum_probs=127.4
Q ss_pred hhHHHHHHhcCCceEEEEecCCeEEEEEeccCCCCccCCCCcceeEeecCcEEEEEeccccchhhhhhhhcccccccccc
Q psy8777 25 VEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARAGFDRHITI 104 (291)
Q Consensus 25 ~eya~~av~~g~~t~vgi~~~~~vv~a~~~~~~~~l~~~~~~~ki~~i~~~~~~~~~G~~~D~~~~~~~~~~~yd~~~~~ 104 (291)
=|||+|||++| +|+|||+++||||||+||+. ++.+|||+|+||++|+++|+.+|++.+++.++..+......
T Consensus 17 ~EYA~kav~~g-~T~VGIk~kdgVVLaaek~~-------~~~~KI~~I~d~ig~~~sG~~~D~~~lv~~~r~~a~~~~~~ 88 (228)
T TIGR03691 17 AELARKGIARG-RSVVVLTYADGILFVAENPS-------RSLHKISELYDRIGFAAVGKYNEFENLRRAGIRYADMRGYS 88 (228)
T ss_pred HHHHHHHHHcC-CcEEEEEeCCeEEEEEecCC-------CCcCcEEEecCCEEEEEcCCHHHHHHHHHHHHHHHHHHhhh
Confidence 48999999998 59999999999999999973 34689999999999999999999999999998655444333
Q ss_pred cCCCCchhhHHHHHhhhcC-Cc-eeEEEEecccEEEEEeeccCCCcccCC-CCcceEEEecCcEEEE-ee-cccccHHHH
Q psy8777 105 FSPEGRLYQVEYAFKAINQ-GG-VTSVAVKGVDTAVVATEKKVPDSLVDP-KTVTNLYSLTPTVGCV-MT-GMQADSRYQ 179 (291)
Q Consensus 105 ~sp~grl~qve~~~~~~~~-g~-~~~igi~~~~~vvl~~d~~~~~~l~~~-~~~~kI~~i~~~~~~~-~s-G~~~D~~~~ 179 (291)
|++. .+. ++.......| .+ ......+|.++.+|.+. +++ +.+|+||.+||+|.+. .. ..+.+..+.
T Consensus 89 ~~~~-~~~-v~~la~~~tq~~~~~~~~~~RP~gvs~Li~G-------~d~~~~gp~Ly~vDpsG~~~~~~~~~aiG~gs~ 159 (228)
T TIGR03691 89 YDRR-DVT-GRGLANAYAQTLGTIFTEQQKPYEVEICVAE-------VGETPDQDQLYRITFDGSIVDERGFVVMGGTTE 159 (228)
T ss_pred cCCC-Ccc-HHHHHHHHHhhcccccccccCcceEEEEEEE-------EcCCCCCCEEEEECCCCCceeccceEEECCChH
Confidence 3311 111 1111111111 11 01123688888888775 544 4679999999999765 23 355556666
Q ss_pred HHHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHHHhh--hcCcceeeeeeeeEEE
Q psy8777 180 VQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYT--QNAEMRPLGCSMILIS 231 (291)
Q Consensus 180 ~~~~~~e~~~~~~~~~~~~s~~~l~~~l~~~~~~~~--~~~~~~p~~~~~li~G 231 (291)
.....+|. .+.++|+.+++++.+.+.++.-. .+....|-++++.++.
T Consensus 160 ~a~~~Lek-----~y~~~ms~eeai~la~~aL~~~~~~~r~~~~~~~iEv~ii~ 208 (228)
T TIGR03691 160 PIATALKE-----SYRDGLSLADALGLAVQALRAGGNGEKRELDAASLEVAVLD 208 (228)
T ss_pred HHHHHHHH-----hcCCCCCHHHHHHHHHHHHHHHhccccccCCccceEEEEEe
Confidence 55555555 34458999999986555543332 2223678888888875
No 52
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=99.89 E-value=5.2e-22 Score=161.41 Aligned_cols=145 Identities=14% Similarity=0.069 Sum_probs=117.9
Q ss_pred eeEEEEecccEEEEEeeccCC-CcccCCCCcceEEEecC-cEEEEeecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHH
Q psy8777 126 VTSVAVKGVDTAVVATEKKVP-DSLVDPKTVTNLYSLTP-TVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQL 203 (291)
Q Consensus 126 ~~~igi~~~~~vvl~~d~~~~-~~l~~~~~~~kI~~i~~-~~~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l 203 (291)
||++|++++++|||++|++.+ +.++..++..||++|++ ++.++++|..+|.+.+.++++.+++.|+.+.+ +.+
T Consensus 1 tTivgi~~~dgVvlaaD~r~t~G~~v~~~~~~Ki~~i~d~~i~~~~aG~~aD~~~l~~~~~~~~~~y~~~~~-----~~a 75 (171)
T cd01913 1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERFEAKLEQYPGNLL-----RAA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeccEEEcCCcceEEEeCCCCEEEEecccHHHHHHHHHHHHHHHHHhhchHH-----HHH
Confidence 488999999999999999998 56677788899999999 99999999999999999999999999987755 344
Q ss_pred HHHHHHHHHHhhhcCcceeee-eeeeEEEEeCCCCcEEEEECCCCceEeee--EEEecCCchHHHHHHHHhccCCCC-CC
Q psy8777 204 CNRIADISQVYTQNAEMRPLG-CSMILISYDENEGPLIYKTDPAGYYCSFK--AVSVGVKTTEANSYLEKKFKKKTN-YT 279 (291)
Q Consensus 204 ~~~l~~~~~~~~~~~~~~p~~-~~~li~G~d~~~gp~Ly~~d~~G~~~~~~--~~a~G~gs~~~~~~Le~~~~~~~~-~t 279 (291)
++.++.++ .| +.+|+. +.++++ |. ++||.+||.|.+.+.+ +.++|+||.+++++||.+|++ + ||
T Consensus 76 a~l~~~l~-~~----~~~~~l~a~~iv~--~~---~~ly~id~~G~~ie~~~~~~a~GSGS~ya~g~ld~~yk~--~~ms 143 (171)
T cd01913 76 VELAKDWR-TD----RYLRRLEAMLIVA--DK---EHTLLISGNGDVIEPDDGIAAIGSGGNYALAAARALLDH--TDLS 143 (171)
T ss_pred HHHHHHHH-hc----cCcCceEEEEEEe--CC---CcEEEECCCCCEeccCCCeEEEeCCHHHHHHHHHHhhcc--CCCC
Confidence 44444432 12 234554 444443 32 4999999999999994 999999999999999999999 7 99
Q ss_pred HHHHHHHHHhh
Q psy8777 280 GDETIQLAISC 290 (291)
Q Consensus 280 ~~eai~l~~~~ 290 (291)
.+ +++++|
T Consensus 144 ~~---~la~~A 151 (171)
T cd01913 144 AE---EIARKA 151 (171)
T ss_pred HH---HHHHHH
Confidence 54 666555
No 53
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=99.88 E-value=1.7e-21 Score=158.39 Aligned_cols=147 Identities=16% Similarity=0.124 Sum_probs=117.5
Q ss_pred eeEEEEecccEEEEEeeccCC-CcccCCCCcceEEEe-cCcEEEEeecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHH
Q psy8777 126 VTSVAVKGVDTAVVATEKKVP-DSLVDPKTVTNLYSL-TPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQL 203 (291)
Q Consensus 126 ~~~igi~~~~~vvl~~d~~~~-~~l~~~~~~~kI~~i-~~~~~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l 203 (291)
||++|++++|+|||++|++.+ +.++..++.+||++| ++++.++++|..+|.+.+.+.++.+++.|+++. .+.+
T Consensus 1 tTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~Ki~~i~~d~i~~~~aG~~aD~q~l~~~~~~~~~~y~~~~-----~~~~ 75 (171)
T TIGR03692 1 TTILAVRRNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEYQGNL-----TRAA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeceEEEcCCCCeEEEeCCCCEEEEecchHHHHHHHHHHHHHHHHHccCch-----HHHH
Confidence 488999999999999999998 566777888999999 599999999999999999999999999887632 3555
Q ss_pred HHHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECCCCceEee--eEEEecCCchHHHHHHHHhcc-CCCCCCH
Q psy8777 204 CNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSF--KAVSVGVKTTEANSYLEKKFK-KKTNYTG 280 (291)
Q Consensus 204 ~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~~G~~~~~--~~~a~G~gs~~~~~~Le~~~~-~~~~~t~ 280 (291)
++.++.+. .| ...+.+.+.++++ |. ++||.+|+.|.+.+. +++++|+||.+++++||..|+ + +|+
T Consensus 76 a~l~~~~~-~~---~~~~~l~a~~iv~--~~---~~ly~i~~~G~~ie~~~~~~a~GSGS~~a~g~ld~~y~~~--~~s- 143 (171)
T TIGR03692 76 VELAKDWR-TD---RYLRRLEAMLIVA--DK---ETSLLISGTGDVIEPEDGIAAIGSGGNYALAAARALLRNT--DLS- 143 (171)
T ss_pred HHHHHHHh-hc---ccccccEEEEEEE--cC---CCEEEEcCCCcEeccCCCeEEEeCCHHHHHHHHHHhhhcC--CCC-
Confidence 55554431 11 1122334555554 32 499999999999996 599999999999999999995 5 788
Q ss_pred HHHHHHHHhhC
Q psy8777 281 DETIQLAISCL 291 (291)
Q Consensus 281 ~eai~l~~~~l 291 (291)
|++++++||
T Consensus 144 --a~~la~~Av 152 (171)
T TIGR03692 144 --AEEIAREAL 152 (171)
T ss_pred --HHHHHHHHH
Confidence 888887764
No 54
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.82 E-value=2.2e-19 Score=151.50 Aligned_cols=174 Identities=13% Similarity=0.053 Sum_probs=117.2
Q ss_pred CCceEEEEecCCeEEEEEeccCC-CCccCCCCcceeEeecCcEEEEEeccccchhhhhhhhcccc--------ccccccc
Q psy8777 35 GGVTSVAVKGVDTAVVATEKKVP-DSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARAGF--------DRHITIF 105 (291)
Q Consensus 35 g~~t~vgi~~~~~vv~a~~~~~~-~~l~~~~~~~ki~~i~~~~~~~~~G~~~D~~~~~~~~~~~y--------d~~~~~~ 105 (291)
| +|+|||+++||||||+|+|.+ +.+..+++.+|||+|++|++|+++|+.+|++.+++.+|.+. +.++++-
T Consensus 2 G-~T~igi~~kdgVvlaad~r~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 80 (197)
T cd03760 2 G-TSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPK 80 (197)
T ss_pred C-ceEEEEEeCCcEEEEEcCcccccceeecCCCCcEEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence 5 499999999999999999988 57888888999999999999999999999999999988431 1122221
Q ss_pred CCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEE-eecccccHHHHHHHHH
Q psy8777 106 SPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCV-MTGMQADSRYQVQRAR 184 (291)
Q Consensus 106 sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~-~sG~~~D~~~~~~~~~ 184 (291)
.....+.++.|. ...+++|....+|.+. ++++.+|+||.+||.|.+. +...+.+..+......
T Consensus 81 ~la~~i~~~~y~---------~~~~~rP~~v~~iiaG-------~D~~~gp~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~ 144 (197)
T cd03760 81 EIHSYLTRVLYN---------RRSKMNPLWNTLVVGG-------VDNEGEPFLGYVDLLGTAYEDPHVATGFGAYLALPL 144 (197)
T ss_pred HHHHHHHHHHHH---------HhhcCCCceEEEEEEE-------EcCCCCEEEEEEcCCccEEECCEeEEccHHHHHHHH
Confidence 111122222222 1224567766666654 5545689999999999753 2222233555444444
Q ss_pred HHHHHhHhhhCC--CCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEE
Q psy8777 185 YEAASFKYKHGY--SMPIDQLCNRIADISQVYTQNAEMRPLGCSMILI 230 (291)
Q Consensus 185 ~e~~~~~~~~~~--~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~ 230 (291)
++. .++. +|+.+++.+.+.+.+.....+....+-++++.++
T Consensus 145 Le~-----~~~~~~~ms~eea~~l~~~~l~~~~~rd~~~~~~~~i~ii 187 (197)
T cd03760 145 LRE-----AWEKKPDLTEEEARALIEECMKVLYYRDARSINKYQIAVV 187 (197)
T ss_pred HHh-----hcCCCCCCCHHHHHHHHHHHHHHHHHhccccCCceEEEEE
Confidence 443 2344 7999999887666665444444455556666655
No 55
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.81 E-value=7.5e-19 Score=151.09 Aligned_cols=181 Identities=6% Similarity=0.020 Sum_probs=117.7
Q ss_pred eEEEEecCCeEEEEEeccCCCCccCCCCcceeEeec----CcEEEEEeccccchhhhhhhhcccccccccccCC-CCchh
Q psy8777 38 TSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLT----PTVGCVMTGMQADSRYQVQRARAGFDRHITIFSP-EGRLY 112 (291)
Q Consensus 38 t~vgi~~~~~vv~a~~~~~~~~l~~~~~~~ki~~i~----~~~~~~~~G~~~D~~~~~~~~~~~yd~~~~~~sp-~grl~ 112 (291)
-+|||+++||||||+|+|.+++++.+++.+|||+|+ +||+|++||+.+|+|.+++.+|.+...+-..+.- .-.+.
T Consensus 2 ~~vGIk~kdGVVLaadkr~~~~l~~~~~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~v~ 81 (236)
T cd03765 2 YCLGIKLDAGLVFASDSRTNAGVDNISTYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNAPTMF 81 (236)
T ss_pred eEEEEEeCCeEEEEEccCccCCCccccccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhCCCCCCHH
Confidence 479999999999999999999988777789999998 9999999999999999999998553332222111 11111
Q ss_pred hHHHHHhh-hcCCceeEE-----EEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEE-eec----ccccHHHHHH
Q psy8777 113 QVEYAFKA-INQGGVTSV-----AVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCV-MTG----MQADSRYQVQ 181 (291)
Q Consensus 113 qve~~~~~-~~~g~~~~i-----gi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~-~sG----~~~D~~~~~~ 181 (291)
++-..... ..+..+..- ..++.+..+|.+. ++++.+|+||.++|+|.+. ... .+.+. ....
T Consensus 82 ~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG-------~D~~~Gp~LY~idpsG~~~e~~a~~~~~AiG~-~~~a 153 (236)
T cd03765 82 DAARYVGETLREVQEQDREALKKAGIDFSASFILGG-------QIKGEEPRLFLIYPQGNFIEATPDTPFLQIGE-TKYG 153 (236)
T ss_pred HHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEe-------EECCCCCEEEEECCCCCEEeecCCCceeeeCC-chhh
Confidence 11111100 011000111 1356666666654 5556789999999999643 211 01122 2333
Q ss_pred HHHHHHHHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEE
Q psy8777 182 RARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILIS 231 (291)
Q Consensus 182 ~~~~e~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G 231 (291)
...+|. .|+++|+.+++++.+.+.+.....+....+-.+++.++-
T Consensus 154 ~~~Lek-----~yk~~ms~eeai~la~~al~~a~~rd~~sg~~iev~vI~ 198 (236)
T cd03765 154 KPILDR-----VITPDTSLEDAAKCALVSMDSTMRSNLSVGPPLDLLVYE 198 (236)
T ss_pred HHHHHH-----hcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEE
Confidence 344443 345689999999866666655656666677788888873
No 56
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.81 E-value=4.2e-19 Score=149.48 Aligned_cols=173 Identities=14% Similarity=0.144 Sum_probs=112.8
Q ss_pred cCCceEEEEecCCeEEEEEeccCCCCccCCC-CcceeEeecCcEEEEEeccccchhhhhhhhcccc-------ccccccc
Q psy8777 34 QGGVTSVAVKGVDTAVVATEKKVPDSLVDPK-TVTNLYSLTPTVGCVMTGMQADSRYQVQRARAGF-------DRHITIF 105 (291)
Q Consensus 34 ~g~~t~vgi~~~~~vv~a~~~~~~~~l~~~~-~~~ki~~i~~~~~~~~~G~~~D~~~~~~~~~~~y-------d~~~~~~ 105 (291)
+|+ |+|||+++||||||+|+|.+++++.+. +.+|||+|++|++|+++|+.+|+|.+++.+|.+. +.++++-
T Consensus 2 ~G~-t~igik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~ 80 (195)
T cd03759 2 NGG-AVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYRLREEREIKPK 80 (195)
T ss_pred CCc-eEEEEEcCCEEEEEEccccccCCEeEecCCCeEEEeCCCEEEEccchHHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 564 999999999999999999999887754 6799999999999999999999999999998442 2223222
Q ss_pred CCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEE-ee-cccccHHHHHHHH
Q psy8777 106 SPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCV-MT-GMQADSRYQVQRA 183 (291)
Q Consensus 106 sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~-~s-G~~~D~~~~~~~~ 183 (291)
.....+.++-|..+ .+|....++.+. ++++.+|+||.+||.|.+. .. ..+.+..+.....
T Consensus 81 ~la~~l~~~ly~~r-----------~~P~~v~~ii~G-------~D~~~~p~Ly~~D~~G~~~~~~~~~a~G~g~~~~~~ 142 (195)
T cd03759 81 TFSSLISSLLYEKR-----------FGPYFVEPVVAG-------LDPDGKPFICTMDLIGCPSIPSDFVVSGTASEQLYG 142 (195)
T ss_pred HHHHHHHHHHHHhc-----------CCCceEEEEEEE-------EcCCCCEEEEEEcCCCcccccCCEEEEcccHHHHHH
Confidence 21122222222111 124444444443 5545569999999999852 11 1122344444444
Q ss_pred HHHHHHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEE
Q psy8777 184 RYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILI 230 (291)
Q Consensus 184 ~~e~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~ 230 (291)
.++. .++++|+.+++.+.+.+.+.....+....+-.+++.++
T Consensus 143 ~Le~-----~~~~~~s~~ea~~l~~~~l~~~~~rd~~~~~~~~i~ii 184 (195)
T cd03759 143 MCES-----LWRPDMEPDELFETISQALLSAVDRDALSGWGAVVYII 184 (195)
T ss_pred HHHh-----ccCCCCCHHHHHHHHHHHHHHHHhhCcccCCceEEEEE
Confidence 4443 24558999999997666665444444444555555555
No 57
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.80 E-value=5.1e-19 Score=148.69 Aligned_cols=173 Identities=9% Similarity=0.017 Sum_probs=115.1
Q ss_pred ceEEEEecCCeEEEEEeccCCC-CccCCCCcceeEeecCcEEEEEeccccchhhhhhhhccc-------ccccccccCCC
Q psy8777 37 VTSVAVKGVDTAVVATEKKVPD-SLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARAG-------FDRHITIFSPE 108 (291)
Q Consensus 37 ~t~vgi~~~~~vv~a~~~~~~~-~l~~~~~~~ki~~i~~~~~~~~~G~~~D~~~~~~~~~~~-------yd~~~~~~sp~ 108 (291)
+|+|||+++||||||+|+|.+. .+..+++++|||+|++++++++||+.+|+|.++++++.+ |+.++++-...
T Consensus 2 ~t~igi~~~dgVvlaad~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la 81 (193)
T cd03758 2 ETLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAAA 81 (193)
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEecCcccEEEeCCCeEEEEccchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 5899999999999999999976 567888899999999999999999999999999999844 22333222111
Q ss_pred CchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEE-eecccccHHHHHHHHHHHH
Q psy8777 109 GRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCV-MTGMQADSRYQVQRARYEA 187 (291)
Q Consensus 109 grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~-~sG~~~D~~~~~~~~~~e~ 187 (291)
..+..+-|... . .. +|....++.+. ++++.+|+||.+||.|.+. ....+.+..+...+..+|.
T Consensus 82 ~~l~~~~~~~~-------~-~~-rP~~~~~li~G-------~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~ 145 (193)
T cd03758 82 NFTRRELAESL-------R-SR-TPYQVNLLLAG-------YDKVEGPSLYYIDYLGTLVKVPYAAHGYGAYFCLSILDR 145 (193)
T ss_pred HHHHHHHHHHh-------h-cC-CCeEEEEEEEE-------EcCCCCcEEEEECCCcceEECCeeEEeecHHHHHHHHHh
Confidence 11111111110 1 01 45555555544 5545689999999999763 3333334555555555544
Q ss_pred HHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEE
Q psy8777 188 ASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILI 230 (291)
Q Consensus 188 ~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~ 230 (291)
. ++.+|+.+++++.+...+.....+.....-.+++.++
T Consensus 146 ~-----~~~~ms~eeai~l~~~a~~~~~~rd~~~~~~i~i~ii 183 (193)
T cd03758 146 Y-----YKPDMTVEEALELMKKCIKELKKRFIINLPNFTVKVV 183 (193)
T ss_pred c-----cCCCCCHHHHHHHHHHHHHHHHHhccccCCceEEEEE
Confidence 2 3458999999987666655444444445556666665
No 58
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.80 E-value=1.1e-18 Score=146.08 Aligned_cols=171 Identities=15% Similarity=0.161 Sum_probs=114.3
Q ss_pred ceEEEEecCCeEEEEEeccCCC-CccCCCCcceeEeecCcEEEEEeccccchhhhhhhhccc-------ccccccccCCC
Q psy8777 37 VTSVAVKGVDTAVVATEKKVPD-SLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARAG-------FDRHITIFSPE 108 (291)
Q Consensus 37 ~t~vgi~~~~~vv~a~~~~~~~-~l~~~~~~~ki~~i~~~~~~~~~G~~~D~~~~~~~~~~~-------yd~~~~~~sp~ 108 (291)
+|+|||+++||||||+|+|.++ .+..+++.+|||+|++|++|++||+.+|+|.+++++|.+ |++++++-...
T Consensus 1 tT~igi~~kdgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~~~~la 80 (188)
T cd03761 1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNKERISVAAAS 80 (188)
T ss_pred CcEEEEEECCEEEEEEcCCccCCcEEEcCCcceEEEccCcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 4899999999999999999988 567777889999999999999999999999999999844 23333332222
Q ss_pred CchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEE-eecccccHHHHHHHHHHHH
Q psy8777 109 GRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCV-MTGMQADSRYQVQRARYEA 187 (291)
Q Consensus 109 grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~-~sG~~~D~~~~~~~~~~e~ 187 (291)
.++.++-|..+ +. +....++.+. ++ +++|+||.+||.|.+. ....+.+......+..+|.
T Consensus 81 ~~ls~~l~~~~---~~--------~~~v~~li~G-------~D-~~g~~L~~~dp~G~~~~~~~~a~G~g~~~~~~~Le~ 141 (188)
T cd03761 81 KLLSNMLYQYK---GM--------GLSMGTMICG-------WD-KTGPGLYYVDSDGTRLKGDLFSVGSGSTYAYGVLDS 141 (188)
T ss_pred HHHHHHHHhcC---CC--------CeEEEEEEEE-------Ee-CCCCEEEEEcCCceEEEcCeEEEcccHHHHHHHHHh
Confidence 22222222221 11 1222222222 34 4689999999999863 2333333555555555554
Q ss_pred HHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEE
Q psy8777 188 ASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILIS 231 (291)
Q Consensus 188 ~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G 231 (291)
.++.+|+.+++.+.+.+.+.....+....+.++++.++.
T Consensus 142 -----~~~~~~s~eea~~l~~~~l~~~~~rd~~sg~~~~v~ii~ 180 (188)
T cd03761 142 -----GYRYDLSVEEAYDLARRAIYHATHRDAYSGGNVNLYHVR 180 (188)
T ss_pred -----cCCCCCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEc
Confidence 345589999999977776655545455566677776663
No 59
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.80 E-value=1.7e-18 Score=147.68 Aligned_cols=180 Identities=14% Similarity=0.157 Sum_probs=113.4
Q ss_pred HhcCCceEEEEecCCeEEEEEeccCCCCccC-CCCcceeEeecCcEEEEEeccccchhhhhhhhcccc-------ccccc
Q psy8777 32 INQGGVTSVAVKGVDTAVVATEKKVPDSLVD-PKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARAGF-------DRHIT 103 (291)
Q Consensus 32 v~~g~~t~vgi~~~~~vv~a~~~~~~~~l~~-~~~~~ki~~i~~~~~~~~~G~~~D~~~~~~~~~~~y-------d~~~~ 103 (291)
+++| +|+|||+++||||||+|+|.+++++. +++.+|||+|++|++|++||+.+|+|.+++.+|.+. +.+++
T Consensus 5 ~~~G-~Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~i~ 83 (212)
T cd03757 5 TDNG-GTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNKEMS 83 (212)
T ss_pred cCCC-ccEEEEEcCCEEEEEECCccccCCEeEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHHHHHHHHHhHHhCCCCC
Confidence 4577 49999999999999999999988754 567899999999999999999999999999998542 22222
Q ss_pred ccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEE-eecccccHHHHHHH
Q psy8777 104 IFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCV-MTGMQADSRYQVQR 182 (291)
Q Consensus 104 ~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~-~sG~~~D~~~~~~~ 182 (291)
.-.....+..+-|..+ .+|..+.++.+. ++++.+|+||.+||.|.+. ....+.+..+....
T Consensus 84 ~~~la~~ls~~ly~~R-----------~~P~~~~~iiaG-------~D~~~~p~Ly~~D~~G~~~~~~~~a~G~g~~~~~ 145 (212)
T cd03757 84 TEAIAQLLSTILYSRR-----------FFPYYVFNILAG-------IDEEGKGVVYSYDPVGSYERETYSAGGSASSLIQ 145 (212)
T ss_pred HHHHHHHHHHHHHhhc-----------CCCeEEEEEEEE-------EcCCCCEEEEEEcCccCeeecCEEEEeecHHHHH
Confidence 2211111111112111 124444444443 4544569999999999752 11222224444444
Q ss_pred HHHHHHHhHh----hhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEE
Q psy8777 183 ARYEAASFKY----KHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILI 230 (291)
Q Consensus 183 ~~~e~~~~~~----~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~ 230 (291)
..++....+. .+..+|+.+++.+.+.+.+.....+....+-.+++.++
T Consensus 146 ~~Le~~~~~~~~~~~~~~~ms~eea~~l~~~~l~~~~~rd~~sg~~i~i~ii 197 (212)
T cd03757 146 PLLDNQVGRKNQNNVERTPLSLEEAVSLVKDAFTSAAERDIYTGDSLEIVII 197 (212)
T ss_pred HHHHHHHHhhccCcCCCCCCCHHHHHHHHHHHHHHHHHhCcccCCCEEEEEE
Confidence 4444332211 12368999999997766665444444444455555554
No 60
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=99.78 E-value=5.7e-18 Score=145.06 Aligned_cols=166 Identities=11% Similarity=0.098 Sum_probs=107.9
Q ss_pred cCCceEEEEecCCeEEEEEeccCCC-CccCCCCcceeEeecCcEEEEEeccccchhhhhhhhcccccccccccCCCCchh
Q psy8777 34 QGGVTSVAVKGVDTAVVATEKKVPD-SLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARAGFDRHITIFSPEGRLY 112 (291)
Q Consensus 34 ~g~~t~vgi~~~~~vv~a~~~~~~~-~l~~~~~~~ki~~i~~~~~~~~~G~~~D~~~~~~~~~~~yd~~~~~~sp~grl~ 112 (291)
+| +|+|||+++||||||+|+|.++ ++..+++.+|||+|++|++|+++|+.+|++.+++++|.+....-..+. +..
T Consensus 1 ~G-~T~igi~~kdgVvlaad~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~---~~i 76 (219)
T TIGR03690 1 HG-TTIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRLFQVELEHYEKIEG---VPL 76 (219)
T ss_pred CC-cEEEEEEECCEEEEEECCccccCcEEEcCCcceEEEcCCcEEEEecccHHHHHHHHHHHHHHHHHHHHHHC---CCC
Confidence 35 5999999999999999999987 788888899999999999999999999999999999844322211111 111
Q ss_pred hHHHHHhh---hcCCceeEEEEecccEEEEEeeccCCCcccCCC-CcceEEEecCcEE-EEe-ecccccHHHHHHHHHHH
Q psy8777 113 QVEYAFKA---INQGGVTSVAVKGVDTAVVATEKKVPDSLVDPK-TVTNLYSLTPTVG-CVM-TGMQADSRYQVQRARYE 186 (291)
Q Consensus 113 qve~~~~~---~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~-~~~kI~~i~~~~~-~~~-sG~~~D~~~~~~~~~~e 186 (291)
.++...+. ..+.. +.-.++|....++.+. ++.. .+|+||.+||.|. +.. ...+.+..+......++
T Consensus 77 ~~~~la~~ls~~~~~~-~~~~~rp~~v~~iiaG-------~D~~~~~~~Ly~~Dp~G~~~~~~~~~a~G~g~~~a~~~Le 148 (219)
T TIGR03690 77 TLDGKANRLAAMVRGN-LPAAMQGLAVVPLLAG-------YDLDAGAGRIFSYDVTGGRYEERGYHAVGSGSVFAKGALK 148 (219)
T ss_pred CHHHHHHHHHHHHHhh-hhhccCCceEEEEEEE-------ECCCCCCcEEEEEeCCCCeeecCCeEEEeccHHHHHHHHH
Confidence 11111110 01111 1223566665556554 5543 5689999999994 322 12233355555555555
Q ss_pred HHHhHhhhCCCCCHHHHHHHHHHHHHHhhh
Q psy8777 187 AASFKYKHGYSMPIDQLCNRIADISQVYTQ 216 (291)
Q Consensus 187 ~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~ 216 (291)
. .+.++|+.++++..+.+.+.....
T Consensus 149 ~-----~~~~~ms~eeai~l~~~al~~~~~ 173 (219)
T TIGR03690 149 K-----LYSPDLDEDDALRVAVEALYDAAD 173 (219)
T ss_pred h-----cCCCCcCHHHHHHHHHHHHHHHHh
Confidence 3 334589999999866665544433
No 61
>KOG0176|consensus
Probab=99.78 E-value=2.2e-19 Score=144.27 Aligned_cols=87 Identities=41% Similarity=0.787 Sum_probs=83.0
Q ss_pred hcccccccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEEeeccc
Q psy8777 94 ARAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVMTGMQ 173 (291)
Q Consensus 94 ~~~~yd~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~~sG~~ 173 (291)
.|++||+-.++|||+|||+|+||+.++++-|+ +.||++.+.+|+|+.+||.++.|+.++...||++||+|++|+++|+.
T Consensus 4 trseydrgVNTfSpEGRlfQVEYaieAikLGs-TaIGv~TkEgVvL~vEKritSpLm~p~sveKi~eid~HIgca~SGl~ 82 (241)
T KOG0176|consen 4 TRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGS-TAIGVKTKEGVVLAVEKRITSPLMEPSSVEKIVEIDDHIGCAMSGLI 82 (241)
T ss_pred cHHHhcccccccCCCceeeehhhHHHHHhcCC-ceeeeeccceEEEEEeccccCcccCchhhhhheehhhceeeeccccc
Confidence 36789999999999999999999999999999 88999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHH
Q psy8777 174 ADSRYQVQ 181 (291)
Q Consensus 174 ~D~~~~~~ 181 (291)
+|++.++.
T Consensus 83 aDarTlve 90 (241)
T KOG0176|consen 83 ADARTLVE 90 (241)
T ss_pred cchHHHHH
Confidence 99998755
No 62
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.76 E-value=1.6e-17 Score=139.07 Aligned_cols=170 Identities=12% Similarity=0.116 Sum_probs=109.7
Q ss_pred ceEEEEecCCeEEEEEeccCCC-CccCCCCcceeEeecCcEEEEEeccccchhhhhhhhcccc-------cccccccCCC
Q psy8777 37 VTSVAVKGVDTAVVATEKKVPD-SLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARAGF-------DRHITIFSPE 108 (291)
Q Consensus 37 ~t~vgi~~~~~vv~a~~~~~~~-~l~~~~~~~ki~~i~~~~~~~~~G~~~D~~~~~~~~~~~y-------d~~~~~~sp~ 108 (291)
+|+|||+++||||||+|+|.+. .+..+++.+|||+|++|++++++|+.+|+|.+++.++.+. +..+++....
T Consensus 1 ~t~igi~~~dgVvla~D~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~a 80 (188)
T cd03762 1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAA 80 (188)
T ss_pred CeEEEEEECCeEEEEEcccccCCceEEcCCcccEEEccCCEEEEecccHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHH
Confidence 4899999999999999999988 5666777899999999999999999999999999887432 2222222111
Q ss_pred CchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEEeecccc-cHHHHHHHHHHHH
Q psy8777 109 GRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVMTGMQA-DSRYQVQRARYEA 187 (291)
Q Consensus 109 grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~~sG~~~-D~~~~~~~~~~e~ 187 (291)
..+.++-|. . + ++....++.+. ++++.+|+||.++|.|.+.-.-..+ +.........++.
T Consensus 81 ~~l~~~~~~-------~-~----~~~~~~~ii~G-------~d~~~gp~ly~~d~~G~~~~~~~~~~G~g~~~~~~~Le~ 141 (188)
T cd03762 81 SLFKNLCYN-------Y-K----EMLSAGIIVAG-------WDEQNGGQVYSIPLGGMLIRQPFAIGGSGSTYIYGYVDA 141 (188)
T ss_pred HHHHHHHHh-------c-c----ccceeeEEEEE-------EcCCCCcEEEEECCCCCEEecCEEEEcccHHHHHHHHHh
Confidence 111111111 1 1 22333333332 4445679999999999653111111 2443333333333
Q ss_pred HHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEE
Q psy8777 188 ASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILI 230 (291)
Q Consensus 188 ~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~ 230 (291)
.++++++.+++.+.+.+.+.....+....+-.+++.++
T Consensus 142 -----~~~~~~s~~ea~~l~~~al~~~~~rd~~~~~~~~i~~i 179 (188)
T cd03762 142 -----NYKPGMTLEECIKFVKNALSLAMSRDGSSGGVIRLVII 179 (188)
T ss_pred -----cCCCCCCHHHHHHHHHHHHHHHHHhccccCCCEEEEEE
Confidence 34568999999997777765555555455666666666
No 63
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=99.76 E-value=1.3e-17 Score=144.84 Aligned_cols=180 Identities=14% Similarity=0.093 Sum_probs=113.5
Q ss_pred HHhcCCceEEEEecCCeEEEEEeccCCC-CccCCCCcceeEeecCcEEEEEeccccchhhhhhhhcccccccccccCCCC
Q psy8777 31 AINQGGVTSVAVKGVDTAVVATEKKVPD-SLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARAGFDRHITIFSPEG 109 (291)
Q Consensus 31 av~~g~~t~vgi~~~~~vv~a~~~~~~~-~l~~~~~~~ki~~i~~~~~~~~~G~~~D~~~~~~~~~~~yd~~~~~~sp~g 109 (291)
-+++|+ |+|||+++||||||+|+|.+. .++.+++.+|||+|++|++++++|+.+|+|.+++++|.+....-..+ |
T Consensus 35 ~~~~G~-T~IgIk~kdgVvlAaD~r~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~---g 110 (247)
T PTZ00488 35 EFAHGT-TTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEINPTLLGTMAGGAADCSFWERELAMQCRLYELRN---G 110 (247)
T ss_pred ccCCCc-eEEEEEeCCEEEEEEecCcccCCEEEcCCcCceEEcCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHH---C
Confidence 345774 999999999999999999885 78888889999999999999999999999999999984422111111 1
Q ss_pred chhhHHHHHhhhcCCceeEEEEecccEE--EEEeeccCCCcccCCCCcceEEEecCcEEEE-eecccccHHHHHHHHHHH
Q psy8777 110 RLYQVEYAFKAINQGGVTSVAVKGVDTA--VVATEKKVPDSLVDPKTVTNLYSLTPTVGCV-MTGMQADSRYQVQRARYE 186 (291)
Q Consensus 110 rl~qve~~~~~~~~g~~~~igi~~~~~v--vl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~-~sG~~~D~~~~~~~~~~e 186 (291)
+...++...+.+.+. ....|++... +|.+. ++ +++|+||.+||.|.+. ....+.+..+......++
T Consensus 111 ~~isv~~la~~ls~~---l~~~R~~~~~v~~iiaG-------~D-~~gp~Ly~vDp~Gs~~~~~~~a~G~gs~~~~~~Le 179 (247)
T PTZ00488 111 ELISVAAASKILANI---VWNYKGMGLSMGTMICG-------WD-KKGPGLFYVDNDGTRLHGNMFSCGSGSTYAYGVLD 179 (247)
T ss_pred CCCCHHHHHHHHHHH---HHhcCCCCeeEEEEEEE-------Ee-CCCCEEEEEcCCcceeecCCEEEccCHHHHHHHHH
Confidence 111122222222110 0111333322 12222 34 4579999999999763 222223355544444444
Q ss_pred HHHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEE
Q psy8777 187 AASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILI 230 (291)
Q Consensus 187 ~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~ 230 (291)
.. ++.+|+.+++.+.+.+.+.....+......++++.++
T Consensus 180 ~~-----~k~dms~eEai~l~~kal~~~~~Rd~~sg~~~ei~iI 218 (247)
T PTZ00488 180 AG-----FKWDLNDEEAQDLGRRAIYHATFRDAYSGGAINLYHM 218 (247)
T ss_pred hc-----CcCCCCHHHHHHHHHHHHHHHHHhccccCCCeEEEEE
Confidence 42 4558999999997766665554444444555555555
No 64
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=99.75 E-value=1.7e-17 Score=138.59 Aligned_cols=170 Identities=17% Similarity=0.192 Sum_probs=110.8
Q ss_pred ceEEEEecCCeEEEEEeccCCC-CccCCCCcceeEeecCcEEEEEeccccchhhhhhhhccc-------ccccccccCCC
Q psy8777 37 VTSVAVKGVDTAVVATEKKVPD-SLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARAG-------FDRHITIFSPE 108 (291)
Q Consensus 37 ~t~vgi~~~~~vv~a~~~~~~~-~l~~~~~~~ki~~i~~~~~~~~~G~~~D~~~~~~~~~~~-------yd~~~~~~sp~ 108 (291)
+|+|||+++||||||+|+|.+. ++..+++.+|||+|++|++++++|+.+|+|.++++++.+ |+.++++....
T Consensus 2 ~t~igi~~~dgVvla~d~~~~~~~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 81 (185)
T TIGR03634 2 TTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKALA 81 (185)
T ss_pred CcEEEEEeCCEEEEEEcCcccCCCEEecCCcccEEEcCCCEEEEcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 5999999999999999999884 677777889999999999999999999999999988743 22222221111
Q ss_pred CchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEE-eecccccHHHHHHHHHHHH
Q psy8777 109 GRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCV-MTGMQADSRYQVQRARYEA 187 (291)
Q Consensus 109 grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~-~sG~~~D~~~~~~~~~~e~ 187 (291)
..+.++-|. ...+|....++.+. ++ +++|+||.+||.|.+. ....+.+.........++.
T Consensus 82 ~~l~~~~~~-----------~~~rP~~v~~ivaG-------~d-~~g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~ 142 (185)
T TIGR03634 82 TLLSNILNS-----------NRFFPFIVQLLVGG-------VD-EEGPHLYSLDPAGGIIEDDYTATGSGSPVAYGVLED 142 (185)
T ss_pred HHHHHHHHh-----------cCCCCeEEEEEEEE-------Ee-CCCCEEEEECCCCCeEECCEEEEcCcHHHHHHHHHh
Confidence 111111111 12345554454443 44 3579999999999753 1111122333333333333
Q ss_pred HHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEE
Q psy8777 188 ASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILI 230 (291)
Q Consensus 188 ~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~ 230 (291)
.++++|+.+++.+.+.+.+.....+....+-.+++.++
T Consensus 143 -----~~~~~~s~~ea~~l~~~~l~~~~~r~~~~~~~~~v~ii 180 (185)
T TIGR03634 143 -----EYREDMSVEEAKKLAVRAIKSAIERDVASGNGIDVAVI 180 (185)
T ss_pred -----cCCCCCCHHHHHHHHHHHHHHHHHhcccCCCCEEEEEE
Confidence 23468999999997777775555544455556666665
No 65
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=99.74 E-value=5.8e-18 Score=141.85 Aligned_cols=178 Identities=17% Similarity=0.235 Sum_probs=115.6
Q ss_pred HhcCCceEEEEecCCeEEEEEeccCC--CCccCCCCcceeEeecCcEEEEEeccccchhhhhhhhccc-------ccccc
Q psy8777 32 INQGGVTSVAVKGVDTAVVATEKKVP--DSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARAG-------FDRHI 102 (291)
Q Consensus 32 v~~g~~t~vgi~~~~~vv~a~~~~~~--~~l~~~~~~~ki~~i~~~~~~~~~G~~~D~~~~~~~~~~~-------yd~~~ 102 (291)
|++|+ |+|||+++||||||+|+|.+ +.+..+++.+|||+|++|++++++|+.+|++.+++.++.+ |+..+
T Consensus 1 v~~G~-t~vgi~~~dgvvla~d~~~~~g~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~ 79 (190)
T PF00227_consen 1 VNNGT-TVVGIKGKDGVVLAADKRISYGSKLRSPNTVDKIFKINDNIIIGFSGLTADFQYLIRRLREEAQEYRFSYGRPI 79 (190)
T ss_dssp HHTSB-EEEEEEESSEEEEEEEEEEEETTEEEESSTSSSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGT
T ss_pred CCCCe-EEEEEEECCEEEEEEccccccccccccccccceeeeccCcceeeccccccchHHHHhhhcccchhhhhccCccc
Confidence 57885 99999999999999999988 5565666579999999999999999999999999988833 22222
Q ss_pred cccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEE-e-ecccccHHHHH
Q psy8777 103 TIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCV-M-TGMQADSRYQV 180 (291)
Q Consensus 103 ~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~-~-sG~~~D~~~~~ 180 (291)
+.......+.. +........ +.+|....++.+. +++..+|+||.+||.|.+. . ...+.+.....
T Consensus 80 ~~~~l~~~~~~--~~~~~~~~~-----~~~p~~~~~li~G-------~d~~~~~~l~~vd~~G~~~~~~~~~aiG~g~~~ 145 (190)
T PF00227_consen 80 SPEYLAKAIAS--LIQNYTYRS-----GRRPYGVSLLIAG-------YDEDGGPQLYSVDPSGSYIECKRFAAIGSGSQF 145 (190)
T ss_dssp CHHHHHHHHHH--HHHHHHHHT-----TTSTTSEEEEEEE-------EETTTEEEEEEEETTSEEEEBSSEEEESTTHHH
T ss_pred cchhhhhhhHH--HHhhhcccc-----cccCccccceeee-------eccccccceeeeccccccccccccccchhcchh
Confidence 22100001111 111111111 1245555555554 5555669999999999764 3 24445555544
Q ss_pred HHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeE
Q psy8777 181 QRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMIL 229 (291)
Q Consensus 181 ~~~~~e~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li 229 (291)
....++... ..+++.+++.+.+...+.....+....+..+++.|
T Consensus 146 ~~~~l~~~~-----~~~~~~~ea~~~~~~~l~~~~~~d~~~~~~~~v~v 189 (190)
T PF00227_consen 146 AQPILEKLY-----KPDLSLEEAIELALKALKEAIDRDILSGDNIEVAV 189 (190)
T ss_dssp HHHHHHHHH-----TTTSSHHHHHHHHHHHHHHHHHHBTTSTSEEEEEE
T ss_pred hhHHHHhhc-----cCCCCHHHHHHHHHHHHHHHHhhCCccCCeEEEEE
Confidence 444444432 45899999999777666555554444555555544
No 66
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.74 E-value=4.7e-17 Score=136.36 Aligned_cols=175 Identities=13% Similarity=0.099 Sum_probs=109.4
Q ss_pred ceEEEEecCCeEEEEEeccCCCCccC-CCCcceeEeecCcEEEEEeccccchhhhhhhhcccccccccccCCCCchhhHH
Q psy8777 37 VTSVAVKGVDTAVVATEKKVPDSLVD-PKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARAGFDRHITIFSPEGRLYQVE 115 (291)
Q Consensus 37 ~t~vgi~~~~~vv~a~~~~~~~~l~~-~~~~~ki~~i~~~~~~~~~G~~~D~~~~~~~~~~~yd~~~~~~sp~grl~qve 115 (291)
+|+|||+++||||||+|+|.+.++.. ++..+|||+|+++++++++|+.+|++.+++.++.+....-..+. +...++
T Consensus 1 tt~i~i~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~---~~~~~~ 77 (189)
T cd01912 1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNG---RELSVK 77 (189)
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEEcCCcCcEEEccCCEEEEccccHHHHHHHHHHHHHHHHHHHHHhC---CCCCHH
Confidence 38999999999999999999988765 77789999999999999999999999999988743221111111 111111
Q ss_pred HHHhhhc---CCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEE-eecccccHHHHHHHHHHHHHHhH
Q psy8777 116 YAFKAIN---QGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCV-MTGMQADSRYQVQRARYEAASFK 191 (291)
Q Consensus 116 ~~~~~~~---~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~-~sG~~~D~~~~~~~~~~e~~~~~ 191 (291)
...+.+. +.... +|....++.+. +++...|+||.+||.|.+. ....+.+..+......++.
T Consensus 78 ~l~~~l~~~~~~~~~----~P~~~~~iv~G-------~d~~~~~~l~~id~~G~~~~~~~~a~G~~~~~~~~~Le~---- 142 (189)
T cd01912 78 AAANLLSNILYSYRG----FPYYVSLIVGG-------VDKGGGPFLYYVDPLGSLIEAPFVATGSGSKYAYGILDR---- 142 (189)
T ss_pred HHHHHHHHHHHhcCC----CCeEEEEEEEE-------EcCCCCeEEEEECCCCCeEecCEEEEcccHHHHHHHHHh----
Confidence 1111111 11101 56665555554 4444679999999999763 2222223443333333333
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEE
Q psy8777 192 YKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILI 230 (291)
Q Consensus 192 ~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~ 230 (291)
.++.+++.+++.+.+.+.+.....+.......+++.++
T Consensus 143 -~~~~~~s~~ea~~~~~~~l~~~~~~d~~~~~~~~v~vi 180 (189)
T cd01912 143 -GYKPDMTLEEAVELVKKAIDSAIERDLSSGGGVDVAVI 180 (189)
T ss_pred -ccCCCCCHHHHHHHHHHHHHHHHHhcCccCCcEEEEEE
Confidence 24458999999987666664433333333344444444
No 67
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.73 E-value=8.3e-18 Score=144.90 Aligned_cols=81 Identities=42% Similarity=0.714 Sum_probs=76.0
Q ss_pred ccccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEEeecccccHH
Q psy8777 98 FDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVMTGMQADSR 177 (291)
Q Consensus 98 yd~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~~sG~~~D~~ 177 (291)
||+.+++|||+||++|+|||.+++++|+ +++|++++++||+++|++.+++++.+++.+|||+|+++++++++|..+|.+
T Consensus 1 yd~~~t~fsp~Grl~QveyA~~av~~G~-t~igik~~dgVvlaad~~~~~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~ 79 (227)
T cd03750 1 YSFSLTTFSPSGKLVQIEYALAAVSSGA-PSVGIKAANGVVLATEKKVPSPLIDESSVHKVEQITPHIGMVYSGMGPDFR 79 (227)
T ss_pred CCCCCceECCCCeEhHHHHHHHHHHcCC-CEEEEEeCCEEEEEEeecCCccccCCCCcceEEEEcCCEEEEEeEcHHhHH
Confidence 7999999999999999999999999988 999999999999999999988888777889999999999999999999986
Q ss_pred HH
Q psy8777 178 YQ 179 (291)
Q Consensus 178 ~~ 179 (291)
.+
T Consensus 80 ~l 81 (227)
T cd03750 80 VL 81 (227)
T ss_pred HH
Confidence 43
No 68
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.73 E-value=9.1e-18 Score=143.01 Aligned_cols=81 Identities=36% Similarity=0.692 Sum_probs=75.6
Q ss_pred ccccccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEEeeccccc
Q psy8777 96 AGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVMTGMQAD 175 (291)
Q Consensus 96 ~~yd~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~~sG~~~D 175 (291)
..||+++++|+|+||++|+|||.+++++|+ +++|++++++||+++|++.++.++..++.+|||+|+++++++++|+.+|
T Consensus 2 ~~yd~~~t~fsp~Grl~Qveya~~a~~~G~-tvIgik~kdgVvla~d~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D 80 (212)
T cd03751 2 TGYDLSASTFSPDGRVFQVEYANKAVENSG-TAIGIRCKDGVVLAVEKLVTSKLYEPGSNKRIFNVDRHIGIAVAGLLAD 80 (212)
T ss_pred CCccCCCceECCCCcchHHHHHHHHHhcCC-CEEEEEeCCEEEEEEEccccccccCcchhcceeEecCcEEEEEEEChHh
Confidence 369999999999999999999999999998 8899999999999999999877776667899999999999999999999
Q ss_pred HH
Q psy8777 176 SR 177 (291)
Q Consensus 176 ~~ 177 (291)
++
T Consensus 81 ~~ 82 (212)
T cd03751 81 GR 82 (212)
T ss_pred HH
Confidence 75
No 69
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.72 E-value=1.3e-17 Score=142.43 Aligned_cols=75 Identities=73% Similarity=1.202 Sum_probs=69.2
Q ss_pred cccccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEEeec
Q psy8777 97 GFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVMTG 171 (291)
Q Consensus 97 ~yd~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~~sG 171 (291)
.||+++++|+|+||++|+|||++++++++++++|++++++||+++|++.+.+++..++.+|||+|+++++++++|
T Consensus 1 ~yd~~~~~fsp~Grl~Qveya~~a~~~~g~t~igi~~~d~Vvlaad~r~~~~~i~~~~~~Ki~~I~~~i~~~~sG 75 (215)
T cd03754 1 GFDRHITIFSPEGRLYQVEYAFKAVKNAGLTSVAVRGKDCAVVVTQKKVPDKLIDPSTVTHLFRITDEIGCVMTG 75 (215)
T ss_pred CCCCCCeeECCCCeEeHHHhHHHHHhcCCccEEEEEeCCEEEEEEeccccccccCCcccCceEEEcCCEEEEEEe
Confidence 489999999999999999999999988666999999999999999999987777666788999999999999999
No 70
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.72 E-value=7.6e-17 Score=135.03 Aligned_cols=171 Identities=16% Similarity=0.175 Sum_probs=111.2
Q ss_pred ceEEEEecCCeEEEEEeccCCC-CccCCCCcceeEeecCcEEEEEeccccchhhhhhhhcccc-------cccccccCCC
Q psy8777 37 VTSVAVKGVDTAVVATEKKVPD-SLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARAGF-------DRHITIFSPE 108 (291)
Q Consensus 37 ~t~vgi~~~~~vv~a~~~~~~~-~l~~~~~~~ki~~i~~~~~~~~~G~~~D~~~~~~~~~~~y-------d~~~~~~sp~ 108 (291)
+|+|||+++||||||+|+|.++ .+..+++.+||++|++|++++++|+.+|++.+++.++.+. +.+++.....
T Consensus 1 tt~iai~~~dgvvia~d~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (188)
T cd03764 1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALA 80 (188)
T ss_pred CcEEEEEeCCEEEEEEccccccCCEEecCCcccEEEccCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 4899999999999999999887 6777778899999999999999999999999999888432 2222221111
Q ss_pred CchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEE-eecccccHHHHHHHHHHHH
Q psy8777 109 GRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCV-MTGMQADSRYQVQRARYEA 187 (291)
Q Consensus 109 grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~-~sG~~~D~~~~~~~~~~e~ 187 (291)
..+.++-|. ...+|..+.++.+. +++ .+|+||.+||.|.+. ....+.+.........++.
T Consensus 81 ~~i~~~~~~-----------~~~~P~~~~~lvaG-------~d~-~~~~ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~ 141 (188)
T cd03764 81 TLLSNILNS-----------SKYFPYIVQLLIGG-------VDE-EGPHLYSLDPLGSIIEDKYTATGSGSPYAYGVLED 141 (188)
T ss_pred HHHHHHHHh-----------cCCCCcEEEEEEEE-------EeC-CCCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHh
Confidence 111111111 12345555555543 443 579999999999763 1222222333333333333
Q ss_pred HHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEE
Q psy8777 188 ASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILIS 231 (291)
Q Consensus 188 ~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G 231 (291)
.+..+++.+++.+.+.+.+.....+....+-.+++.++.
T Consensus 142 -----~~~~~~~~~ea~~l~~~~l~~~~~rd~~~~~~i~i~iv~ 180 (188)
T cd03764 142 -----EYKEDMTVEEAKKLAIRAIKSAIERDSASGDGIDVVVIT 180 (188)
T ss_pred -----cCCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEC
Confidence 235589999999877776655545444555566666663
No 71
>KOG0184|consensus
Probab=99.72 E-value=1.3e-17 Score=136.46 Aligned_cols=83 Identities=35% Similarity=0.654 Sum_probs=78.9
Q ss_pred ccccccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEEeeccccc
Q psy8777 96 AGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVMTGMQAD 175 (291)
Q Consensus 96 ~~yd~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~~sG~~~D 175 (291)
..||...++|+|+||++|+|||.+++.+++ |+||||+++|||++.+|...++|+.+...+||+.|+.|++++++|+.+|
T Consensus 6 tGyDls~s~fSpdGrvfQveYA~KAven~~-T~IGIk~kdGVVl~vEKli~SkLy~p~sn~ri~~V~r~iG~avaGl~~D 84 (254)
T KOG0184|consen 6 TGYDLSASTFSPDGRVFQVEYAQKAVENSG-TCIGIKCKDGVVLAVEKLITSKLYEPGSNERIFSVDRHIGMAVAGLIPD 84 (254)
T ss_pred ccccccceeeCCCCceehHHHHHHHHhcCC-cEEEEecCCeEEEEEeeeecccccccCCCCceEeecccccEEEeccccc
Confidence 358999999999999999999999999999 9999999999999999999999999988999999999999999999999
Q ss_pred HHHH
Q psy8777 176 SRYQ 179 (291)
Q Consensus 176 ~~~~ 179 (291)
.+.+
T Consensus 85 g~~l 88 (254)
T KOG0184|consen 85 GRHL 88 (254)
T ss_pred hHHH
Confidence 8764
No 72
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=99.72 E-value=1.6e-16 Score=132.21 Aligned_cols=160 Identities=23% Similarity=0.312 Sum_probs=104.6
Q ss_pred ceEEEEecCCeEEEEEeccCCCCccC-CCCcceeEeecCcEEEEEeccccchhhhhhhhcccccccccccCCCCchhhHH
Q psy8777 37 VTSVAVKGVDTAVVATEKKVPDSLVD-PKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARAGFDRHITIFSPEGRLYQVE 115 (291)
Q Consensus 37 ~t~vgi~~~~~vv~a~~~~~~~~l~~-~~~~~ki~~i~~~~~~~~~G~~~D~~~~~~~~~~~yd~~~~~~sp~grl~qve 115 (291)
+|+|||+++||||||+|+|.++++.. +++.+|||+|+++++++++|+.+|++.+++.++.+.......+ ++..++.
T Consensus 1 tt~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~---~~~~~~~ 77 (182)
T cd01906 1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRY---GEPIPVE 77 (182)
T ss_pred CcEEEEEeCCEEEEEEecccCCcCeecCCCcceEEEECCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHh---CCCCCHH
Confidence 38999999999999999999987765 6678999999999999999999999999998884322111111 1111111
Q ss_pred HHHhhhc---CCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEE-----eecccccHHHHHHHHHHHH
Q psy8777 116 YAFKAIN---QGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCV-----MTGMQADSRYQVQRARYEA 187 (291)
Q Consensus 116 ~~~~~~~---~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~-----~sG~~~D~~~~~~~~~~e~ 187 (291)
...+.+. +..+.. .+|....++.+. ++...+|+||.+||+|.+. +.| ..+...+..++.
T Consensus 78 ~l~~~l~~~~~~~~~~--~~p~~~~~lv~G-------~d~~~~~~Ly~id~~G~~~~~~~~a~G----~g~~~~~~~L~~ 144 (182)
T cd01906 78 ALAKLLANLLYEYTQS--LRPLGVSLLVAG-------VDEEGGPQLYSVDPSGSYIEYKATAIG----SGSQYALGILEK 144 (182)
T ss_pred HHHHHHHHHHHHhCCC--ccChheEEEEEE-------EeCCCCcEEEEECCCCCEeeccEEEEC----CCcHHHHHHHHH
Confidence 1111111 011011 466666666554 4444689999999999763 344 333333333333
Q ss_pred HHhHhhhCCCCCHHHHHHHHHHHHHHhhhc
Q psy8777 188 ASFKYKHGYSMPIDQLCNRIADISQVYTQN 217 (291)
Q Consensus 188 ~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~ 217 (291)
.++.+++.+++++.+.+.+.....+
T Consensus 145 -----~~~~~~s~~ea~~l~~~~l~~~~~~ 169 (182)
T cd01906 145 -----LYKPDMTLEEAIELALKALKSALER 169 (182)
T ss_pred -----HccCCCCHHHHHHHHHHHHHHHHcc
Confidence 2445899999999877777655443
No 73
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.72 E-value=1.4e-16 Score=133.47 Aligned_cols=172 Identities=19% Similarity=0.168 Sum_probs=106.3
Q ss_pred ceEEEEecCCeEEEEEeccCCCC-ccCCCCcceeEeecCcEEEEEeccccchhhhhhhhcccccccccccCCCCchhhHH
Q psy8777 37 VTSVAVKGVDTAVVATEKKVPDS-LVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARAGFDRHITIFSPEGRLYQVE 115 (291)
Q Consensus 37 ~t~vgi~~~~~vv~a~~~~~~~~-l~~~~~~~ki~~i~~~~~~~~~G~~~D~~~~~~~~~~~yd~~~~~~sp~grl~qve 115 (291)
+|+|||+++||||||+|+|.+++ +..+++.+|||+|+++++|+++|+.+|+|.+++.+|.+.......+. +...++
T Consensus 1 tt~igi~~~dgvvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~---~~~~~~ 77 (189)
T cd03763 1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSNLELHRLNTG---RKPRVV 77 (189)
T ss_pred CeEEEEEECCeEEEEEcCCcccCceEEcCCccceEEecCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhC---CCCCHH
Confidence 58999999999999999999885 56667789999999999999999999999999988844221111111 111111
Q ss_pred HHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEE-----eecccccHHHHHHHHHHHHHHh
Q psy8777 116 YAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCV-----MTGMQADSRYQVQRARYEAASF 190 (291)
Q Consensus 116 ~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~-----~sG~~~D~~~~~~~~~~e~~~~ 190 (291)
...+.+.+.- ... -.+.+..++.+. ++ +.+|+||.+||.|.+. +.| ..+......++.
T Consensus 78 ~~a~~l~~~l-~~~-~~p~~v~~ivaG-------~d-~~g~~ly~~d~~G~~~~~~~~a~G----~~~~~~~~~L~~--- 140 (189)
T cd03763 78 TALTMLKQHL-FRY-QGHIGAALVLGG-------VD-YTGPHLYSIYPHGSTDKLPFVTMG----SGSLAAMSVLED--- 140 (189)
T ss_pred HHHHHHHHHH-HHc-CCccceeEEEEe-------Ec-CCCCEEEEECCCCCEEecCEEEEc----CCHHHHHHHHHh---
Confidence 1111111000 000 003333333332 33 3569999999999753 444 232222222332
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEE
Q psy8777 191 KYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILI 230 (291)
Q Consensus 191 ~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~ 230 (291)
.+.++++.+++.+.+.+.+.....+.-..+-++++.++
T Consensus 141 --~~~~~ls~~ea~~l~~~~l~~~~~rd~~~~~~~~v~ii 178 (189)
T cd03763 141 --RYKPDMTEEEAKKLVCEAIEAGIFNDLGSGSNVDLCVI 178 (189)
T ss_pred --hcCCCCCHHHHHHHHHHHHHHHHHhcCcCCCceEEEEE
Confidence 24468999999997777665554444345556666665
No 74
>KOG0182|consensus
Probab=99.72 E-value=1.2e-17 Score=135.66 Aligned_cols=83 Identities=73% Similarity=1.134 Sum_probs=79.4
Q ss_pred ccccccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEEeeccccc
Q psy8777 96 AGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVMTGMQAD 175 (291)
Q Consensus 96 ~~yd~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~~sG~~~D 175 (291)
..||+++++|||+|||+|+||+++++++++.+.++++++|++|++++|+.|.+|++.+...++|+|..+++|+++|+.+|
T Consensus 7 agfDrhitIFspeGrLyQVEYafkAin~~gltsVavrgkDcavvvsqKkvpDKLld~~tvt~~f~itk~ig~v~tG~~aD 86 (246)
T KOG0182|consen 7 AGFDRHITIFSPEGRLYQVEYAFKAINQAGLTSVAVRGKDCAVVVTQKKVPDKLLDSSTVTHLFRITKKIGCVITGMIAD 86 (246)
T ss_pred CCccceEEEECCCceEEeeehHHHHhhcCCCceEEEcCCceEEEEecccCcccccccccceeEEEeeccceEEEecCCcc
Confidence 56999999999999999999999999998889999999999999999999999999888999999999999999999999
Q ss_pred HHH
Q psy8777 176 SRY 178 (291)
Q Consensus 176 ~~~ 178 (291)
+++
T Consensus 87 ar~ 89 (246)
T KOG0182|consen 87 ARS 89 (246)
T ss_pred hHH
Confidence 863
No 75
>KOG0173|consensus
Probab=99.68 E-value=1.2e-16 Score=133.21 Aligned_cols=162 Identities=18% Similarity=0.222 Sum_probs=122.2
Q ss_pred HHHHhcCCceEEEEecCCeEEEEEeccCCCC-ccCCCCcceeEeecCcEEEEEeccccchhhhhhhhcccccccccccCC
Q psy8777 29 FKAINQGGVTSVAVKGVDTAVVATEKKVPDS-LVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARAGFDRHITIFSP 107 (291)
Q Consensus 29 ~~av~~g~~t~vgi~~~~~vv~a~~~~~~~~-l~~~~~~~ki~~i~~~~~~~~~G~~~D~~~~~~~~~~~yd~~~~~~sp 107 (291)
-++.+.| ||+||+..+||||+++|+|++.. .+..++.+|||.|.++|+|+.+|.++|...+.+...++.+.+-...
T Consensus 31 p~~tkTG-TtIvgv~~k~gvIlgADtRaT~G~IvaDKnC~KIH~ia~~IyccGAGtAADte~vt~m~ss~l~Lh~l~t-- 107 (271)
T KOG0173|consen 31 PKATKTG-TTIVGVIFKDGVILGADTRATEGPIVADKNCEKIHFIAPNIYCCGAGTAADTEMVTRMISSNLELHRLNT-- 107 (271)
T ss_pred CcccccC-cEEEEEEeCCeEEEeecccccCCCeeecchhHHHhhcccceEEccCCchhhHHHHHHHHHHHHHHHHhcc--
Confidence 4567666 89999999999999999999985 5555677999999999999999999999988887776666553332
Q ss_pred CCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEE-----EeecccccHHHHHHH
Q psy8777 108 EGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGC-----VMTGMQADSRYQVQR 182 (291)
Q Consensus 108 ~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~-----~~sG~~~D~~~~~~~ 182 (291)
+|...|-.+.+..+|.-...-|..+..-++-..| ..+|+||.|.|||.- +.-| +.++++.
T Consensus 108 -~R~~rVv~A~~mlkQ~LFrYqG~IgA~LiiGGvD----------~TGpHLy~i~phGStd~~Pf~alG----SGslaAm 172 (271)
T KOG0173|consen 108 -GRKPRVVTALRMLKQHLFRYQGHIGAALILGGVD----------PTGPHLYSIHPHGSTDKLPFTALG----SGSLAAM 172 (271)
T ss_pred -CCCCceeeHHHHHHHHHHHhcCcccceeEEcccc----------CCCCceEEEcCCCCcCccceeeec----cchHHHH
Confidence 4555555666666654434444444444444433 579999999999963 4445 6778888
Q ss_pred HHHHHHHhHhhhCCCCCHHHHHHHHHHHHHH
Q psy8777 183 ARYEAASFKYKHGYSMPIDQLCNRIADISQV 213 (291)
Q Consensus 183 ~~~e~~~~~~~~~~~~s~~~l~~~l~~~~~~ 213 (291)
..+|. +|+.+|+.+++.+.+++-++.
T Consensus 173 svlEs-----r~k~dlt~eea~~Lv~eAi~A 198 (271)
T KOG0173|consen 173 SVLES-----RWKPDLTKEEAIKLVCEAIAA 198 (271)
T ss_pred HHHHH-----hcCcccCHHHHHHHHHHHHHh
Confidence 88887 566799999999988887743
No 76
>PRK03996 proteasome subunit alpha; Provisional
Probab=99.68 E-value=1.3e-16 Score=138.82 Aligned_cols=87 Identities=40% Similarity=0.784 Sum_probs=80.2
Q ss_pred hcccccccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEEeeccc
Q psy8777 94 ARAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVMTGMQ 173 (291)
Q Consensus 94 ~~~~yd~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~~sG~~ 173 (291)
++..||.++++|||+||++|+|||.+++++|+ +++|++++++||+++|++.++.++..++.+|||+|+++++++++|..
T Consensus 6 ~~~~y~~~~~~fsp~Gr~~Q~eya~~av~~G~-t~igik~~dgVvlaad~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~ 84 (241)
T PRK03996 6 QQMGYDRAITIFSPDGRLYQVEYAREAVKRGT-TAVGVKTKDGVVLAVDKRITSPLIEPSSIEKIFKIDDHIGAASAGLV 84 (241)
T ss_pred cccccCCCCceECCCCeEhHHHHHHHHHHhCC-CEEEEEeCCEEEEEEeccCCCcccCCCccceEEEEcCCEEEEEcccH
Confidence 45679999999999999999999999999988 99999999999999999998777766778999999999999999999
Q ss_pred ccHHHHHH
Q psy8777 174 ADSRYQVQ 181 (291)
Q Consensus 174 ~D~~~~~~ 181 (291)
+|.+.+.+
T Consensus 85 ~D~~~l~~ 92 (241)
T PRK03996 85 ADARVLID 92 (241)
T ss_pred HHHHHHHH
Confidence 99987644
No 77
>KOG0183|consensus
Probab=99.68 E-value=6.7e-17 Score=131.61 Aligned_cols=149 Identities=30% Similarity=0.387 Sum_probs=117.5
Q ss_pred ccccccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEEeeccccc
Q psy8777 96 AGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVMTGMQAD 175 (291)
Q Consensus 96 ~~yd~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~~sG~~~D 175 (291)
++||+.+++|||+|+|+|||||++++.+|+ +++|+++.++||++.+++....|.+++...||..+|+|+.++++|+.+|
T Consensus 2 srydraltvFSPDGhL~QVEYAqEAvrkGs-taVgvrg~~~vvlgvEkkSv~~Lq~~r~~rkI~~ld~hV~mafaGl~aD 80 (249)
T KOG0183|consen 2 SRYDRALTVFSPDGHLFQVEYAQEAVRKGS-TAVGVRGNNCVVLGVEKKSVPKLQDERTVRKISMLDDHVVMAFAGLTAD 80 (249)
T ss_pred CccccceEEECCCCCEEeeHhHHHHHhcCc-eEEEeccCceEEEEEeecchhhhhhhhhhhhheeecceeeEEecCCCcc
Confidence 369999999999999999999999999999 9999999999999999998888888888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCC--cEEEEECCCCceEeee
Q psy8777 176 SRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEG--PLIYKTDPAGYYCSFK 253 (291)
Q Consensus 176 ~~~~~~~~~~e~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~g--p~Ly~~d~~G~~~~~~ 253 (291)
++- +...++..-..|+..+--...+.+|.+.+..+.|+- .... |.-+ .| --|...||.|+..-+.
T Consensus 81 Ari----linrArvecqShrlt~edpvtveyitRyiA~~kQrY-Tqs~-------grRP-FGvs~Li~GfD~~g~p~lyq 147 (249)
T KOG0183|consen 81 ARI----LINRARVECQSHRLTLEDPVTVEYITRYIAGLKQRY-TQSN-------GRRP-FGVSTLIGGFDPDGTPRLYQ 147 (249)
T ss_pred cee----ehhhHhHhhhhhhcccCCCcHHHHHHHHHHHhhhhh-hccC-------Cccc-ccceEEEEeeCCCCCeeeEe
Confidence 863 456666666677555554556789999998886631 1112 2222 23 3578999999655444
Q ss_pred EEEec
Q psy8777 254 AVSVG 258 (291)
Q Consensus 254 ~~a~G 258 (291)
--..|
T Consensus 148 tePsG 152 (249)
T KOG0183|consen 148 TEPSG 152 (249)
T ss_pred eCCCc
Confidence 33344
No 78
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=99.66 E-value=2.4e-17 Score=86.85 Aligned_cols=23 Identities=74% Similarity=1.262 Sum_probs=22.4
Q ss_pred ccceeeeeCCCCcchhhhHHHHH
Q psy8777 9 FDRHITIFSPEGRLYQVEYAFKA 31 (291)
Q Consensus 9 yd~~~~~fsp~g~~~q~eya~~a 31 (291)
||+++|+|||||||+|||||+||
T Consensus 1 YD~~~t~FSp~Grl~QVEYA~~A 23 (23)
T PF10584_consen 1 YDRSITTFSPDGRLFQVEYAMKA 23 (23)
T ss_dssp TSSSTTSBBTTSSBHHHHHHHHH
T ss_pred CCCCceeECCCCeEEeeEeeecC
Confidence 89999999999999999999997
No 79
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=3.3e-15 Score=129.15 Aligned_cols=81 Identities=43% Similarity=0.840 Sum_probs=74.1
Q ss_pred cccccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccC-CCCcceEEEecCcEEEEeeccccc
Q psy8777 97 GFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVD-PKTVTNLYSLTPTVGCVMTGMQAD 175 (291)
Q Consensus 97 ~yd~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~-~~~~~kI~~i~~~~~~~~sG~~~D 175 (291)
.|++.+++|+|+||++|+||+.+++.+++++++|+++++||||++|+|.+.+++. .++.+|||+|++|++++++|+.+|
T Consensus 2 ~~~~~~~~fsp~g~l~q~e~a~~a~~~~gtT~vgik~~dgVVlaadkr~t~~~~~~~~~~~Ki~~I~d~i~~~~sG~~aD 81 (236)
T COG0638 2 GYDRAITIFSPEGRLFQVEYALEAVKRGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAAD 81 (236)
T ss_pred CCcCcceeECCCCchHHHHHHHHHHHcCCceEEEEEecCEEEEEEeccCCCCceecccccceEEEecCCEEEEeccCcHh
Confidence 4788999999999999999999999999779999999999999999999976554 455899999999999999999999
Q ss_pred HH
Q psy8777 176 SR 177 (291)
Q Consensus 176 ~~ 177 (291)
++
T Consensus 82 a~ 83 (236)
T COG0638 82 AQ 83 (236)
T ss_pred HH
Confidence 54
No 80
>KOG0181|consensus
Probab=99.52 E-value=7.2e-15 Score=118.14 Aligned_cols=84 Identities=44% Similarity=0.725 Sum_probs=78.6
Q ss_pred cccccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEEeecccccH
Q psy8777 97 GFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVMTGMQADS 176 (291)
Q Consensus 97 ~yd~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~~sG~~~D~ 176 (291)
.|..++++|||+|+|.|+|||+.++.+|. +.+|++..|||||+++++..+.|++....+|++.|.|+++|.++|+.+|.
T Consensus 5 ~y~fslTtFSpsGKL~QieyAL~Av~~G~-~SvGi~A~nGvVlatekk~~s~L~~~~sv~KV~~i~~~IG~vYSGmgpD~ 83 (233)
T KOG0181|consen 5 GYSFSLTTFSPSGKLVQIEYALTAVVNGQ-TSVGIKAANGVVLATEKKDVSPLVDEESVRKVEKITPHIGCVYSGMGPDY 83 (233)
T ss_pred ccceeeEEEcCCCceehHHHHHHHHhCCC-CceeeeecCceEEEeccCCCCccchhhhhhhHhhccCCcceEEecCCCce
Confidence 57889999999999999999999999998 88999999999999999998999988888999999999999999999999
Q ss_pred HHHHH
Q psy8777 177 RYQVQ 181 (291)
Q Consensus 177 ~~~~~ 181 (291)
|.+++
T Consensus 84 RvlV~ 88 (233)
T KOG0181|consen 84 RVLVH 88 (233)
T ss_pred eehhh
Confidence 87643
No 81
>KOG0863|consensus
Probab=99.47 E-value=7.6e-14 Score=115.11 Aligned_cols=85 Identities=32% Similarity=0.579 Sum_probs=76.0
Q ss_pred hcccccccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEEeeccc
Q psy8777 94 ARAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVMTGMQ 173 (291)
Q Consensus 94 ~~~~yd~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~~sG~~ 173 (291)
.|..||...++|||+||++|+||+++++++|+ ..+|++.+...||++-++..+.+- +...|||+||+|+++.++|+.
T Consensus 2 frnqyd~d~t~wsPqGrl~QvEya~EavkqGs-atVGLks~thaVLvAl~r~~seLs--s~QkKi~~iD~h~g~siAGLt 78 (264)
T KOG0863|consen 2 FRNQYDNDVTTWSPQGRLHQVEYAMEAVKQGS-ATVGLKSRTHAVLVALKRAQSELS--SHQKKIFKIDDHIGISIAGLT 78 (264)
T ss_pred CcccccCceeEECCcceehHHHHHHHHHhccc-ceEeecccceEEEeeeccchhHHH--HhhheeEecccccceEEeccC
Confidence 36779999999999999999999999999999 889999999999999887765553 356799999999999999999
Q ss_pred ccHHHHHH
Q psy8777 174 ADSRYQVQ 181 (291)
Q Consensus 174 ~D~~~~~~ 181 (291)
+|.+.+.+
T Consensus 79 ~Darvl~~ 86 (264)
T KOG0863|consen 79 ADARVLSR 86 (264)
T ss_pred cchHHHHH
Confidence 99988755
No 82
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=99.47 E-value=3.1e-13 Score=110.11 Aligned_cols=62 Identities=23% Similarity=0.171 Sum_probs=56.2
Q ss_pred ceEEEEecCCeEEEEEeccCCCC-ccCCCCcceeEeecC-cEEEEEeccccchhhhhhhhcccc
Q psy8777 37 VTSVAVKGVDTAVVATEKKVPDS-LVDPKTVTNLYSLTP-TVGCVMTGMQADSRYQVQRARAGF 98 (291)
Q Consensus 37 ~t~vgi~~~~~vv~a~~~~~~~~-l~~~~~~~ki~~i~~-~~~~~~~G~~~D~~~~~~~~~~~y 98 (291)
+|+|||+++||||||+|+|.+.+ ++..++.+||++|++ |++|++||..+|+|.+.+.++.+.
T Consensus 1 tTivgi~~~dgVvlaaD~r~t~G~~v~~~~~~Ki~~i~d~~i~~~~aG~~aD~~~l~~~~~~~~ 64 (171)
T cd01913 1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERFEAKL 64 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeccEEEcCCcceEEEeCCCCEEEEecccHHHHHHHHHHHHHHH
Confidence 58999999999999999998764 667777899999999 999999999999999999998654
No 83
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=99.46 E-value=1e-12 Score=107.83 Aligned_cols=62 Identities=21% Similarity=0.163 Sum_probs=56.6
Q ss_pred ceEEEEecCCeEEEEEeccCCCC-ccCCCCcceeEee-cCcEEEEEeccccchhhhhhhhcccc
Q psy8777 37 VTSVAVKGVDTAVVATEKKVPDS-LVDPKTVTNLYSL-TPTVGCVMTGMQADSRYQVQRARAGF 98 (291)
Q Consensus 37 ~t~vgi~~~~~vv~a~~~~~~~~-l~~~~~~~ki~~i-~~~~~~~~~G~~~D~~~~~~~~~~~y 98 (291)
+|+|||+++||||||+|+|.+.+ ++..++.+||++| ++|++|++||..+|+|.+.+.++.+.
T Consensus 2 tTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~KI~~i~~d~i~~~~aG~~aD~q~l~~~l~~~~ 65 (172)
T PRK05456 2 TTILAVRRNGKVAIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKL 65 (172)
T ss_pred cEEEEEEECCEEEEEECCceEeCcEEEcCCCceEEEeCCCCEEEEEeccHHHHHHHHHHHHHHH
Confidence 79999999999999999998764 6677788999999 99999999999999999999998653
No 84
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=99.38 E-value=3.3e-12 Score=104.08 Aligned_cols=63 Identities=22% Similarity=0.192 Sum_probs=56.3
Q ss_pred ceEEEEecCCeEEEEEeccCCCC-ccCCCCcceeEee-cCcEEEEEeccccchhhhhhhhccccc
Q psy8777 37 VTSVAVKGVDTAVVATEKKVPDS-LVDPKTVTNLYSL-TPTVGCVMTGMQADSRYQVQRARAGFD 99 (291)
Q Consensus 37 ~t~vgi~~~~~vv~a~~~~~~~~-l~~~~~~~ki~~i-~~~~~~~~~G~~~D~~~~~~~~~~~yd 99 (291)
+|+|||+++||||||+|+|.+.+ ++..++.+||++| ++|++|++||..+|+|.+.+.++.+.+
T Consensus 1 tTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~Ki~~i~~d~i~~~~aG~~aD~q~l~~~~~~~~~ 65 (171)
T TIGR03692 1 TTILAVRRNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLE 65 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeceEEEcCCCCeEEEeCCCCEEEEecchHHHHHHHHHHHHHHHH
Confidence 58999999999999999998764 6677778999999 599999999999999999999986543
No 85
>KOG0174|consensus
Probab=99.29 E-value=1.6e-11 Score=98.96 Aligned_cols=196 Identities=14% Similarity=0.127 Sum_probs=118.0
Q ss_pred HHhcCCceEEEEecCCeEEEEEeccCCCC-ccCCCCcceeEeecCcEEEEEeccccchhhhhhhhcccccccccccCCCC
Q psy8777 31 AINQGGVTSVAVKGVDTAVVATEKKVPDS-LVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARAGFDRHITIFSPEG 109 (291)
Q Consensus 31 av~~g~~t~vgi~~~~~vv~a~~~~~~~~-l~~~~~~~ki~~i~~~~~~~~~G~~~D~~~~~~~~~~~yd~~~~~~sp~g 109 (291)
-+..| ||++|+..++||||++|.|.+.. ++.++-..|+-+|+|+|+||-||.+||.|.+.+.++...+.+...++
T Consensus 15 evstG-TTImAv~y~gGVvlGaDSRTs~GayvanRvtDKlT~itD~i~cCRSGSAADtQaiaD~~~Y~L~~~~~q~~--- 90 (224)
T KOG0174|consen 15 EVSTG-TTIMAVEYDGGVVLGADSRTSTGAYVANRVTDKLTPITDNIYCCRSGSAADTQAIADIVRYHLELYTIQEN--- 90 (224)
T ss_pred ccccC-ceEEEEEEcCcEEEeccCCccchHHHHhhhcccceeccccEEEecCCchhhHHHHHHHHHHHHHHhhhhcC---
Confidence 35577 89999999999999999998875 66667779999999999999999999999999998854443332222
Q ss_pred chhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEE-----EeecccccHHHHHHHHH
Q psy8777 110 RLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGC-----VMTGMQADSRYQVQRAR 184 (291)
Q Consensus 110 rl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~-----~~sG~~~D~~~~~~~~~ 184 (291)
+..++..+.....+.--..--. ...+++++. +|++.+-++|.|-=-|.+ +..|. ++-.+--+.
T Consensus 91 ~~p~v~~aA~l~r~~~Y~~re~-L~AgliVAG--------wD~~~gGqVY~iplGG~l~rq~~aIgGS--GStfIYGf~- 158 (224)
T KOG0174|consen 91 KPPLVHTAASLFREICYNYREM-LSAGLIVAG--------WDEKEGGQVYSIPLGGSLTRQPFAIGGS--GSTFIYGFC- 158 (224)
T ss_pred CCchHHHHHHHHHHHHHhCHHh-hhcceEEee--------cccccCceEEEeecCceEeecceeeccC--Cceeeeeee-
Confidence 2222222211111000000000 012344443 667777788887544433 23331 111111111
Q ss_pred HHHHHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECCCCce
Q psy8777 185 YEAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYY 249 (291)
Q Consensus 185 ~e~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~~G~~ 249 (291)
.-.++++|+.||...++.+-+.....+.+...--+-++++.-+. -..++|.-|..+.+
T Consensus 159 ------D~~~r~nMt~EE~~~fvk~Av~lAi~rDGsSGGviR~~~I~~~G-ver~~~~~d~~~~~ 216 (224)
T KOG0174|consen 159 ------DANWRPNMTLEECVRFVKNAVSLAIERDGSSGGVIRLVIINKAG-VERRFFPGDKLGQF 216 (224)
T ss_pred ------hhhcCCCCCHHHHHHHHHHHHHHHHhccCCCCCEEEEEEEccCC-ceEEEecCCccccc
Confidence 12466799999999988888766666655444444455542221 12566766766644
No 86
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.25 E-value=4.3e-11 Score=102.13 Aligned_cols=88 Identities=7% Similarity=0.060 Sum_probs=55.4
Q ss_pred EEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEE-eecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHHH
Q psy8777 130 AVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCV-MTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIA 208 (291)
Q Consensus 130 gi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~-~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~~~l~ 208 (291)
+.||....+|.+. ++++.+++||.+||.|.+. +...+.+..+......+|. .|.++|+.+++.+.+.
T Consensus 124 ~~RP~~v~~li~G-------~D~~~g~~ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~-----~y~~~ms~eea~~l~~ 191 (213)
T cd03752 124 GLRPFGVSFLYAG-------WDKHYGFQLYQSDPSGNYSGWKATAIGNNNQAAQSLLKQ-----DYKDDMTLEEALALAV 191 (213)
T ss_pred CcccceeEEEEEE-------EeCCCCCEEEEECCCCCeeeeeEEEECCCcHHHHHHHHH-----hccCCCCHHHHHHHHH
Confidence 5567777776665 5555689999999999753 2222233444444444444 3456899999999666
Q ss_pred HHHHHhhhcCcceeeeeeeeE
Q psy8777 209 DISQVYTQNAEMRPLGCSMIL 229 (291)
Q Consensus 209 ~~~~~~~~~~~~~p~~~~~li 229 (291)
+.+.....+....+..+++.+
T Consensus 192 ~al~~~~~r~~~~~~~~ei~~ 212 (213)
T cd03752 192 KVLSKTMDSTKLTSEKLEFAT 212 (213)
T ss_pred HHHHHHHhccCCCCCcEEEEE
Confidence 655555554445666666554
No 87
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=99.24 E-value=1.7e-10 Score=93.28 Aligned_cols=158 Identities=18% Similarity=0.187 Sum_probs=97.9
Q ss_pred ceEEEEecCCeEEEEEeccCCCCccC-CCCcceeEeecCcEEEEEeccccchhhhhhhhcccccccccccCCCCch-hhH
Q psy8777 37 VTSVAVKGVDTAVVATEKKVPDSLVD-PKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARAGFDRHITIFSPEGRL-YQV 114 (291)
Q Consensus 37 ~t~vgi~~~~~vv~a~~~~~~~~l~~-~~~~~ki~~i~~~~~~~~~G~~~D~~~~~~~~~~~yd~~~~~~sp~grl-~qv 114 (291)
+|+||++++|+||+|+|++.+.++.. .....|++.++++++++++|+.+|++.+.+.++......-..+...-.. ...
T Consensus 1 ~t~i~i~~~~gvila~d~~~~~~~~~~~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
T cd01901 1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPISVVALA 80 (164)
T ss_pred CcEEEEEeCCEEEEEEecccCccCeecCCCcceEEEecCCeEEEEecChHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 48999999999999999999887765 5667999999999999999999999999988874432211111100000 011
Q ss_pred HHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEEee--cccccHHHHHHHHHHHHHHhHh
Q psy8777 115 EYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVMT--GMQADSRYQVQRARYEAASFKY 192 (291)
Q Consensus 115 e~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~~s--G~~~D~~~~~~~~~~e~~~~~~ 192 (291)
....+....-. . .++....++.++ +++ ++++||.++|.+.+... ....+.+.......++.
T Consensus 81 ~~~~~~~~~~~-~---~~p~~~~~iiag-------~~~-~~~~l~~id~~g~~~~~~~~~~~G~~~~~~~~~l~~----- 143 (164)
T cd01901 81 KELAKLLQVYT-Q---GRPFGVNLIVAG-------VDE-GGGNLYYIDPSGPVIENPGAVATGSRSQRAKSLLEK----- 143 (164)
T ss_pred HHHHHHHHHhc-C---CCCcceEEEEEE-------EcC-CCCEEEEECCCcCEeecCcEEEECCCCHHHHHHHHH-----
Confidence 11111111111 1 355566666666 333 67899999999965422 22222333333333332
Q ss_pred hhCCCCCHHHHHHHHHHHH
Q psy8777 193 KHGYSMPIDQLCNRIADIS 211 (291)
Q Consensus 193 ~~~~~~s~~~l~~~l~~~~ 211 (291)
.++.+++.+++.+.+...+
T Consensus 144 ~~~~~~~~~~~~~~~~~~l 162 (164)
T cd01901 144 LYKPDMTLEEAVELALKAL 162 (164)
T ss_pred HhcCCCCHHHHHHHHHHHH
Confidence 2344688888877665544
No 88
>KOG0175|consensus
Probab=99.24 E-value=1.4e-11 Score=103.35 Aligned_cols=196 Identities=17% Similarity=0.160 Sum_probs=125.6
Q ss_pred ccceeeeeCCCCcchhhhHHHHHHhcCCceEEEEecCCeEEEEEeccCCC-CccCCCCcceeEeecCcEEEEEeccccch
Q psy8777 9 FDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPD-SLVDPKTVTNLYSLTPTVGCVMTGMQADS 87 (291)
Q Consensus 9 yd~~~~~fsp~g~~~q~eya~~av~~g~~t~vgi~~~~~vv~a~~~~~~~-~l~~~~~~~ki~~i~~~~~~~~~G~~~D~ 87 (291)
+++.++-+-| +-.+++.| +| ||++|.|++.|||+|+|.|++. +++...+++||..|++++.-+.||-+||+
T Consensus 52 ~l~~~~~~~~--~~~~i~~~-----hG-TTTLAF~f~~GvivAvDSRAs~G~YIasqtv~KVIeIn~ylLGTmAGgAADC 123 (285)
T KOG0175|consen 52 FLFAITDDET--AGVLIKFA-----HG-TTTLAFKFKGGVIVAVDSRASAGSYIASQTVKKVIEINPYLLGTMAGGAADC 123 (285)
T ss_pred hhhhccCCCc--ccceeeec-----CC-ceEEEEEecCcEEEEEeccccccceeechhhceeeeechhhhhcccCcchhh
Confidence 4444444422 33455555 77 8999999999999999999988 57777889999999999999999999999
Q ss_pred hh----hhhhhcccccccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecC
Q psy8777 88 RY----QVQRARAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTP 163 (291)
Q Consensus 88 ~~----~~~~~~~~yd~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~ 163 (291)
+. |-++||.. +. .+++...|.-|.+...+.....-|+-..-|.+|+. ++ +.+|.||.||.
T Consensus 124 qfWer~L~kecRL~-eL------RnkeriSVsaASKllsN~~y~YkGmGLsmGtMi~G--------~D-k~GP~lyYVDs 187 (285)
T KOG0175|consen 124 QFWERVLAKECRLH-EL------RNKERISVSAASKLLSNMVYQYKGMGLSMGTMIAG--------WD-KKGPGLYYVDS 187 (285)
T ss_pred HHHHHHHHHHHHHH-HH------hcCcceehHHHHHHHHHHHhhccCcchhheeeEee--------cc-CCCCceEEEcC
Confidence 96 44444421 00 12333445555565555432333333333444443 22 56788888888
Q ss_pred cEE-----EEeecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCC-
Q psy8777 164 TVG-----CVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEG- 237 (291)
Q Consensus 164 ~~~-----~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~g- 237 (291)
.|. +...| +.+..++..+.. .|..+|+++|+-..-++-+...|.+.. + . +|
T Consensus 188 eG~Rl~G~~FSVG----SGs~yAYGVLDs-----gYr~dls~eEA~~L~rrAI~hAThRDa---y----------S-GG~ 244 (285)
T KOG0175|consen 188 EGTRLSGDLFSVG----SGSTYAYGVLDS-----GYRYDLSDEEAYDLARRAIYHATHRDA---Y----------S-GGV 244 (285)
T ss_pred CCCEecCceEeec----CCCceeEEeecc-----CCCCCCCHHHHHHHHHHHHHHHHhccc---c----------c-Cce
Confidence 774 23334 444444444433 455699999998855555533454332 1 1 22
Q ss_pred cEEEEECCCCceEe
Q psy8777 238 PLIYKTDPAGYYCS 251 (291)
Q Consensus 238 p~Ly~~d~~G~~~~ 251 (291)
-.||.+.+.|...-
T Consensus 245 vnlyHv~edGW~~v 258 (285)
T KOG0175|consen 245 VNLYHVKEDGWVKV 258 (285)
T ss_pred EEEEEECCccceec
Confidence 57999999997644
No 89
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.24 E-value=4.7e-11 Score=101.74 Aligned_cols=90 Identities=10% Similarity=0.166 Sum_probs=54.8
Q ss_pred EEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEE-eecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHHHH-H
Q psy8777 130 AVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCV-MTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNR-I 207 (291)
Q Consensus 130 gi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~-~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~~~-l 207 (291)
+.+|..+.++.+. ++ +.+|+||.+||+|.+. +...+.+.........++....+ .++|+.+++++. +
T Consensus 119 ~~rP~~v~~ii~G-------~D-~~gp~Ly~~Dp~G~~~~~~~~a~G~g~~~a~~~Le~~~~~---~~~ms~ee~i~~~~ 187 (211)
T cd03749 119 GRRPYGVGLLIAG-------YD-ESGPHLFQTCPSGNYFEYKATSIGARSQSARTYLERHFEE---FEDCSLEELIKHAL 187 (211)
T ss_pred CCCCceEEEEEEE-------Ec-CCCCeEEEECCCcCEeeeeEEEECCCcHHHHHHHHHhhcc---ccCCCHHHHHHHHH
Confidence 4566666666654 55 3579999999999763 22333345555444444443221 237999999985 4
Q ss_pred HHHHHHhhhcCc-ceeeeeeeeEEE
Q psy8777 208 ADISQVYTQNAE-MRPLGCSMILIS 231 (291)
Q Consensus 208 ~~~~~~~~~~~~-~~p~~~~~li~G 231 (291)
..+.... .+.. ..+-.+++.+++
T Consensus 188 ~~l~~~~-~~~~~~~~~~iei~ii~ 211 (211)
T cd03749 188 RALRETL-PGEQELTIKNVSIAIVG 211 (211)
T ss_pred HHHHHHh-ccCCCCCCCcEEEEEEC
Confidence 4444433 3333 777888887763
No 90
>KOG0180|consensus
Probab=99.23 E-value=1.4e-10 Score=91.93 Aligned_cols=174 Identities=16% Similarity=0.161 Sum_probs=107.6
Q ss_pred cCCceEEEEecCCeEEEEEeccCCCCc-cCCCCcceeEeecCcEEEEEeccccchhhhhhhhcccccccccccCCCCchh
Q psy8777 34 QGGVTSVAVKGVDTAVVATEKKVPDSL-VDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARAGFDRHITIFSPEGRLY 112 (291)
Q Consensus 34 ~g~~t~vgi~~~~~vv~a~~~~~~~~l-~~~~~~~ki~~i~~~~~~~~~G~~~D~~~~~~~~~~~yd~~~~~~sp~grl~ 112 (291)
+|| ++|+++++|||.||+|+|..... ...+..+|||+|+|++++..+|++.|.|.+.++++.++..--.- ++|-.
T Consensus 7 nGg-~vvAM~gk~cvaIa~D~RlG~q~~tistdf~ki~~igdr~y~GL~glatDvqtl~~~~~fr~nLy~lr---e~R~i 82 (204)
T KOG0180|consen 7 NGG-SVVAMAGKNCVAIASDLRLGVQSQTISTDFQKIFKIGDRLYLGLTGLATDVQTLLERLRFRKNLYELR---EEREI 82 (204)
T ss_pred cCc-eEEEEeCCceEEEEeccccceeeeeeeccchhheecCCeeEEeccccchhHHHHHHHHHHHHhHHHhh---hhccc
Confidence 687 89999999999999999988753 34556799999999999999999999999999988543211000 11111
Q ss_pred hHH------HHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEE------EeecccccHHHHH
Q psy8777 113 QVE------YAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGC------VMTGMQADSRYQV 180 (291)
Q Consensus 113 qve------~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~------~~sG~~~D~~~~~ 180 (291)
+-+ -..-+.++-+ +. +-.-|+|. +++++.|-|...|--|.. .++|.+++ ++
T Consensus 83 ~P~~~s~mvS~~lYekRfg-pY-----f~~PvVAG--------l~~~~kPfIc~mD~IGc~~~~~DFVvsGTa~e--~L- 145 (204)
T KOG0180|consen 83 KPETFSSMVSSLLYEKRFG-PY-----FTEPVVAG--------LDDDNKPFICGMDLIGCIDAPKDFVVSGTASE--QL- 145 (204)
T ss_pred CcHHHHHHHHHHHHHhhcC-Cc-----ccceeEec--------cCCCCCeeEeecccccCcCccCCeEEecchHH--HH-
Confidence 000 0000111111 11 11112221 344566777776654443 34553222 11
Q ss_pred HHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEEEeC
Q psy8777 181 QRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDE 234 (291)
Q Consensus 181 ~~~~~e~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~ 234 (291)
.=.+ +--|..+|.+++|...++.-+-....+.....+|+.+-+++.|+
T Consensus 146 ---~GmC---E~ly~pnmepd~LFetisQa~Lna~DRDalSGwGa~vyiI~kdk 193 (204)
T KOG0180|consen 146 ---YGMC---EALYEPNMEPDELFETISQALLNAVDRDALSGWGAVVYIITKDK 193 (204)
T ss_pred ---HHHH---HHhcCCCCCHHHHHHHHHHHHHhHhhhhhhccCCeEEEEEccch
Confidence 1111 11356799999999876666645556666778899888888775
No 91
>KOG0179|consensus
Probab=99.22 E-value=1.1e-11 Score=101.17 Aligned_cols=180 Identities=15% Similarity=0.168 Sum_probs=107.6
Q ss_pred HhcCCceEEEEecCCeEEEEEeccCCCCccCC-CCcceeEeecCcEEEEEeccccchhhhhhhhcccccccccccCCCCc
Q psy8777 32 INQGGVTSVAVKGVDTAVVATEKKVPDSLVDP-KTVTNLYSLTPTVGCVMTGMQADSRYQVQRARAGFDRHITIFSPEGR 110 (291)
Q Consensus 32 v~~g~~t~vgi~~~~~vv~a~~~~~~~~l~~~-~~~~ki~~i~~~~~~~~~G~~~D~~~~~~~~~~~yd~~~~~~sp~gr 110 (291)
+.||| |+|+|.+.|++|+|+|+|..+.+..+ +..+|||+++|++.++.+|+.+|...|++.+.++
T Consensus 26 ~~NGG-T~vaIaG~dFavvA~DTR~s~gy~I~sR~~~Ki~~l~D~~vl~~sGF~aD~l~L~k~i~~r------------- 91 (235)
T KOG0179|consen 26 EDNGG-TTVAIAGEDFAVVAGDTRMSSGYNINSRDQSKIFKLGDNIVLGSSGFYADTLALVKVIKSR------------- 91 (235)
T ss_pred ccCCc-eEEEEcCCceEEEecccccccceeeeccccchheeccCceEEecccchhhHHHHHHHHHHH-------------
Confidence 46898 99999999999999999988876544 6779999999999999999999999998887642
Q ss_pred hhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCC------CcccCCCCcceEEEecCcEEEE-----eecccccHHHH
Q psy8777 111 LYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVP------DSLVDPKTVTNLYSLTPTVGCV-----MTGMQADSRYQ 179 (291)
Q Consensus 111 l~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~------~~l~~~~~~~kI~~i~~~~~~~-----~sG~~~D~~~~ 179 (291)
+.+.++-.+ ++++ +-+....-..+|..-+.+| -..++++...-+|..||-|.+. +.|.++- .+
T Consensus 92 ~~~Y~~~h~--k~ms--~~s~A~lls~~LY~kRFFPYYv~~ilaGiDeeGKG~VySyDPvGsyer~~~~AgGsa~~--mI 165 (235)
T KOG0179|consen 92 IKQYEHDHN--KKMS--IHSAAQLLSTILYSKRFFPYYVFNILAGIDEEGKGAVYSYDPVGSYERVTCRAGGSAAS--MI 165 (235)
T ss_pred HHHHhhccc--cccc--HHHHHHHHHHHHhhcccccceeeeeeecccccCceeEEeecCCcceeeeeeecCCcchh--hh
Confidence 111111110 0000 0000000011111111122 0225555668999999999763 3442222 11
Q ss_pred HHHHHHHHHHhH----hhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEE
Q psy8777 180 VQRARYEAASFK----YKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILIS 231 (291)
Q Consensus 180 ~~~~~~e~~~~~----~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G 231 (291)
.-.+..+....+ -....+++.+++++.+.+......++.-...-.+.+.|+-
T Consensus 166 ~PfLDnQi~~kn~~~e~~~~~~Ls~e~ai~lv~d~F~SAaERdI~tGD~l~i~I~t 221 (235)
T KOG0179|consen 166 QPFLDNQIGHKNQNLENAERTPLSLERAIRLVKDAFTSAAERDIYTGDKLEICIIT 221 (235)
T ss_pred hhhhhhhccCcCcccccCcccccCHHHHHHHHHHHhhhhhhcccccCCcEEEEEEe
Confidence 112222221111 1223578999999999888765555443344456666653
No 92
>PTZ00246 proteasome subunit alpha; Provisional
Probab=99.16 E-value=2.9e-10 Score=99.59 Aligned_cols=92 Identities=9% Similarity=0.041 Sum_probs=58.0
Q ss_pred EEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEE-eecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHH
Q psy8777 129 VAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCV-MTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRI 207 (291)
Q Consensus 129 igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~-~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~~~l 207 (291)
-+.+|..+.++.+. ++++.+|+||.+||.|.+. +...+.+..+......++. .+..+|+.+++.+.+
T Consensus 125 ~~~rP~~v~~li~G-------~D~~~gp~Ly~~D~~Gs~~~~~~~a~G~gs~~~~~~Le~-----~~~~~ms~eeai~l~ 192 (253)
T PTZ00246 125 GGLRPFGVSFLFAG-------YDENLGYQLYHTDPSGNYSGWKATAIGQNNQTAQSILKQ-----EWKEDLTLEQGLLLA 192 (253)
T ss_pred cCcccCCEEEEEEE-------EeCCCCcEEEEECCCCCEecceEEEECCCcHHHHHHHHH-----hccCCCCHHHHHHHH
Confidence 36678887777765 5555689999999999752 2222222444433444443 344589999999866
Q ss_pred HHHHHHhhhcCcceeeeeeeeEEEE
Q psy8777 208 ADISQVYTQNAEMRPLGCSMILISY 232 (291)
Q Consensus 208 ~~~~~~~~~~~~~~p~~~~~li~G~ 232 (291)
.+.+.....+.......+++.++..
T Consensus 193 ~~al~~~~~~d~~s~~~vev~ii~~ 217 (253)
T PTZ00246 193 AKVLTKSMDSTSPKADKIEVGILSH 217 (253)
T ss_pred HHHHHHHHhccCCCCCcEEEEEEec
Confidence 6655444444445567777777754
No 93
>KOG0178|consensus
Probab=99.10 E-value=4.3e-10 Score=91.94 Aligned_cols=131 Identities=11% Similarity=0.032 Sum_probs=76.8
Q ss_pred chhhhhhhhcccccccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcE
Q psy8777 86 DSRYQVQRARAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTV 165 (291)
Q Consensus 86 D~~~~~~~~~~~yd~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~ 165 (291)
-+|.+.+.--..|...++. .|+-...-.++|+.|..-|.||++...|.+. +++..+-+||+-||+|
T Consensus 89 ~aRi~AQ~yl~~y~e~iP~-------eqLv~~lcdiKQayTQygG~RPFGVSfLYaG-------wd~~~gyqLy~SdPSG 154 (249)
T KOG0178|consen 89 YARIIAQRYLFRYGEEIPC-------EQLVTFLCDIKQAYTQYGGKRPFGVSFLYAG-------WDDRYGYQLYQSDPSG 154 (249)
T ss_pred HHHHHHHHHHHHhCCCCcH-------HHHHHHHHHHHHHHhhccCcCCCceeeeeec-------eecCcceEEEecCCCC
Confidence 3444433333445555544 4555556667788888899999999999987 7878889999999999
Q ss_pred EEE-eecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEEEeC
Q psy8777 166 GCV-MTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDE 234 (291)
Q Consensus 166 ~~~-~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~ 234 (291)
.+. ..+...+..+.++.. ...+.|. +..++++++...+-+++-.-.....+.|--++++.+-.|.
T Consensus 155 ny~gWka~ciG~N~~Aa~s-~Lkqdyk---dd~~~~~eA~~laikvL~kt~d~~~lt~eklEia~~~k~~ 220 (249)
T KOG0178|consen 155 NYGGWKATCIGANSGAAQS-MLKQDYK---DDENDLEEAKALAIKVLSKTLDSGSLTAEKLEIATITKDC 220 (249)
T ss_pred CccccceeeeccchHHHHH-HHHhhhc---cccccHHHHHHHHHHHHHhhcccCCCChhheEEEEEEecC
Confidence 764 222222233222211 1111222 1234577776654444422223334667777777776654
No 94
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=98.91 E-value=7.9e-10 Score=58.39 Aligned_cols=23 Identities=74% Similarity=1.262 Sum_probs=21.6
Q ss_pred ccccccccCCCCchhhHHHHHhh
Q psy8777 98 FDRHITIFSPEGRLYQVEYAFKA 120 (291)
Q Consensus 98 yd~~~~~~sp~grl~qve~~~~~ 120 (291)
||+.+++|||+|||+|||||+++
T Consensus 1 YD~~~t~FSp~Grl~QVEYA~~A 23 (23)
T PF10584_consen 1 YDRSITTFSPDGRLFQVEYAMKA 23 (23)
T ss_dssp TSSSTTSBBTTSSBHHHHHHHHH
T ss_pred CCCCceeECCCCeEEeeEeeecC
Confidence 78999999999999999999875
No 95
>KOG0185|consensus
Probab=98.80 E-value=1.6e-07 Score=78.23 Aligned_cols=81 Identities=25% Similarity=0.249 Sum_probs=64.4
Q ss_pred eeeeeCCCCcchhhhHHHH--------HHhcCCceEEEEecCCeEEEEEeccCCC-CccCCCCcceeEeecCcEEEEEec
Q psy8777 12 HITIFSPEGRLYQVEYAFK--------AINQGGVTSVAVKGVDTAVVATEKKVPD-SLVDPKTVTNLYSLTPTVGCVMTG 82 (291)
Q Consensus 12 ~~~~fsp~g~~~q~eya~~--------av~~g~~t~vgi~~~~~vv~a~~~~~~~-~l~~~~~~~ki~~i~~~~~~~~~G 82 (291)
...+|.|.|.+ +|-|-. -.-.| |++||+|.+||||||+|+..+. ++.--++++||++++|++.++++|
T Consensus 12 a~~~f~~~~~~--m~~a~~~~~qrt~~p~vTG-TSVla~ky~~GVviaaD~lgSYGslaR~~nVeRi~kVgdntllG~sG 88 (256)
T KOG0185|consen 12 APGTFYPSGSL--MENAGDYPIQRTLNPIVTG-TSVLALKYKDGVVIAADTLGSYGSLARYKNVERIFKVGDNTLLGASG 88 (256)
T ss_pred CCCcCcCccch--hhhccCCCcccccCceecc-ceEEEEEecCceEEEecccccchhhhhhcCceeeEEecCceEEecCc
Confidence 34568887554 343322 22245 7999999999999999999776 566667889999999999999999
Q ss_pred cccchhhhhhhhc
Q psy8777 83 MQADSRYQVQRAR 95 (291)
Q Consensus 83 ~~~D~~~~~~~~~ 95 (291)
-.+|.|.|.+.+.
T Consensus 89 disD~Q~i~r~L~ 101 (256)
T KOG0185|consen 89 DISDFQYIQRVLE 101 (256)
T ss_pred cHHHHHHHHHHHH
Confidence 9999999887765
No 96
>KOG0177|consensus
Probab=98.75 E-value=1.8e-07 Score=75.61 Aligned_cols=158 Identities=11% Similarity=0.157 Sum_probs=97.4
Q ss_pred eEEEEecCCeEEEEEeccCCCCcc-CCCCcceeEeecCcEEEEEeccccchhhhhhhhccccc---c-cccccCCCCchh
Q psy8777 38 TSVAVKGVDTAVVATEKKVPDSLV-DPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARAGFD---R-HITIFSPEGRLY 112 (291)
Q Consensus 38 t~vgi~~~~~vv~a~~~~~~~~l~-~~~~~~ki~~i~~~~~~~~~G~~~D~~~~~~~~~~~yd---~-~~~~~sp~grl~ 112 (291)
+.+||++.|.|++|+|+....+++ -.++..|++++++|+.++++|-..|.-...++...+.. . +---.||..-
T Consensus 3 ~llGIkg~dfvilAsDt~~~~si~~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~a-- 80 (200)
T KOG0177|consen 3 TLLGIKGPDFVILASDTSAARSILVLKDDHDKIHRLSDHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAA-- 80 (200)
T ss_pred eEEEeecCCEEEEeecchhhcceEEecccccceEEeccceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHH--
Confidence 689999999999999999777654 33456999999999999999999999877666553211 0 0001122111
Q ss_pred hHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEE-----EeecccccHHHHHHHHHHHH
Q psy8777 113 QVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGC-----VMTGMQADSRYQVQRARYEA 187 (291)
Q Consensus 113 qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~-----~~sG~~~D~~~~~~~~~~e~ 187 (291)
..+.++.+.. ....-++....+|.+. .+++.+|-|+.||--+.+ ++.|..+- ... ..
T Consensus 81 -ahFtR~~La~---~LRsr~~yqV~~LvaG-------Yd~~~gp~L~~iDyla~~~~vpy~~hGy~~~--f~~--sI--- 142 (200)
T KOG0177|consen 81 -AHFTRRELAE---SLRSRTPYQVNILVAG-------YDPEEGPELYYIDYLATLVSVPYAAHGYGSY--FCL--SI--- 142 (200)
T ss_pred -HHHHHHHHHH---HHhcCCCceEEEEEec-------cCCCCCCceeeehhhhhcccCCcccccchhh--hhH--HH---
Confidence 1122222211 1112234555566554 677778999999977754 23343221 111 11
Q ss_pred HHhHhhhCCCCCHHHHHHHHHHHHHHhhhc
Q psy8777 188 ASFKYKHGYSMPIDQLCNRIADISQVYTQN 217 (291)
Q Consensus 188 ~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~ 217 (291)
....|+.+||.+++...+..=+.+..++
T Consensus 143 --lDr~Y~pdmt~eea~~lmkKCv~El~kR 170 (200)
T KOG0177|consen 143 --LDRYYKPDMTIEEALDLMKKCVLELKKR 170 (200)
T ss_pred --HHhhhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 1124667999999988777766555443
No 97
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=4.3e-07 Score=74.21 Aligned_cols=161 Identities=12% Similarity=0.069 Sum_probs=106.6
Q ss_pred eeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcE----EEEeecccccHHHHHHHHHHHHHHhHh-hhCCCCCH
Q psy8777 126 VTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTV----GCVMTGMQADSRYQVQRARYEAASFKY-KHGYSMPI 200 (291)
Q Consensus 126 ~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~----~~~~sG~~~D~~~~~~~~~~e~~~~~~-~~~~~~s~ 200 (291)
|.|+|++...|.|+++|.|...+.-.-....|+|...-.| .++.+|.-+-+|.+...+....+...- ..-.-.++
T Consensus 2 TYCv~l~l~~GlVf~sDsRTNAGvD~istfkKl~~~~~pGdRvlvl~taGNLA~tQaV~~ll~e~~~~d~~~~L~n~~sm 81 (255)
T COG3484 2 TYCVGLILDFGLVFGSDSRTNAGVDYISTFKKLFVFELPGDRVLVLCTAGNLAITQAVLHLLDERIQRDDGDSLLNIPSM 81 (255)
T ss_pred ceEEEEEeccceEEecccccccCchHHHHHHHHhhccCCCceEEEEEecCccHHHHHHHHHHHHHhhccchhhhhcchhH
Confidence 3789999999999999999873321111223333332222 344567666677776666544431110 11123456
Q ss_pred HHHHHHHHHHHHHhhhcC------cceeeeeeeeEEEEeCCCCcEEEEECCCCceEee----eEEEecCCchHHHHHHHH
Q psy8777 201 DQLCNRIADISQVYTQNA------EMRPLGCSMILISYDENEGPLIYKTDPAGYYCSF----KAVSVGVKTTEANSYLEK 270 (291)
Q Consensus 201 ~~l~~~l~~~~~~~~~~~------~~~p~~~~~li~G~d~~~gp~Ly~~d~~G~~~~~----~~~a~G~gs~~~~~~Le~ 270 (291)
.+++..+.....+-..++ ....|.|+++++|-=..+-|.||.+-|-|++.+. +|.-+|. +.+-+++|++
T Consensus 82 ~eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQI~G~pp~Ly~IYpqGNFIqaT~etpf~QiGE-tKYGKPildR 160 (255)
T COG3484 82 YEATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQIKGEPPRLYLIYPQGNFIQATPETPFLQIGE-TKYGKPILDR 160 (255)
T ss_pred HHHHHHHHHHHHHHHhccCchhhccCcceeEEEEEcceecCCCceeEEEccCCCeeecCCCCceeEccc-cccCchhhhh
Confidence 666665554442222221 1246899999999865334999999999999886 6999998 6779999999
Q ss_pred hccCCCCCCHHHHHHHHHh
Q psy8777 271 KFKKKTNYTGDETIQLAIS 289 (291)
Q Consensus 271 ~~~~~~~~t~~eai~l~~~ 289 (291)
.++- ++++||+.++++-
T Consensus 161 ~i~~--~~pLeea~kcaLv 177 (255)
T COG3484 161 TITY--DTPLEEAAKCALV 177 (255)
T ss_pred hhhc--cCCHHHHhhheEE
Confidence 9999 9999999998753
No 98
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=3.1e-05 Score=61.30 Aligned_cols=148 Identities=17% Similarity=0.200 Sum_probs=98.2
Q ss_pred eeEEEEecccEEEEEeeccCC-CcccCCCCcceEEEe-cCcEEEEeecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHH
Q psy8777 126 VTSVAVKGVDTAVVATEKKVP-DSLVDPKTVTNLYSL-TPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQL 203 (291)
Q Consensus 126 ~~~igi~~~~~vvl~~d~~~~-~~l~~~~~~~kI~~i-~~~~~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l 203 (291)
||++++|-.+-+++++|-..+ +..+...+..|+-++ +.....+++|..+|+.++.++...+++.|. ..|
T Consensus 5 TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl~~gkvlaGFAGstADaftLfe~fe~kle~~~---------g~L 75 (178)
T COG5405 5 TTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEQYQ---------GDL 75 (178)
T ss_pred EEEEEEeeCCeEEEecCceEeecceeeeccHHHHHHHcCCcEEEEecccchhHHHHHHHHHHHHHHcc---------CcH
Confidence 599999999999999998766 334443333333333 456677899999999999888877776554 122
Q ss_pred HHHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECCCCceEee--eEEEecCCchHHHHHHHHhccCCCCCCHH
Q psy8777 204 CNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSF--KAVSVGVKTTEANSYLEKKFKKKTNYTGD 281 (291)
Q Consensus 204 ~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~~G~~~~~--~~~a~G~gs~~~~~~Le~~~~~~~~~t~~ 281 (291)
.+..-++.+..-....+|.+..-++|+ |+ -.+|-+.-.|-..+. ...+||+|..++.+-....++. .++|.+
T Consensus 76 ~raavelaKdwr~Dk~lr~LEAmllVa--d~---~~il~isG~gdV~epe~~~~aIGSGgnyAl~AarAl~~~-~~lsA~ 149 (178)
T COG5405 76 FRAAVELAKDWRTDKYLRKLEAMLLVA--DK---THILIITGNGDVIEPEDDIIAIGSGGNYALSAARALMEN-TELSAR 149 (178)
T ss_pred HHHHHHHHHhhhhhhHHHHHhhheeEe--CC---CcEEEEecCcceecCCCCeEEEcCCchHHHHHHHHHHhc-cCCCHH
Confidence 222222221111122345556666666 44 467888888876664 4999999999999999888765 278877
Q ss_pred HHHHHHH
Q psy8777 282 ETIQLAI 288 (291)
Q Consensus 282 eai~l~~ 288 (291)
|-.+-++
T Consensus 150 eIa~~sl 156 (178)
T COG5405 150 EIAEKSL 156 (178)
T ss_pred HHHHHHH
Confidence 7655444
No 99
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.99 E-value=0.041 Score=43.93 Aligned_cols=59 Identities=24% Similarity=0.170 Sum_probs=45.5
Q ss_pred ceEEEEecCCeEEEEEeccCCCCc-cCCCCcceeEee-cCcEEEEEeccccchhhhhhhhc
Q psy8777 37 VTSVAVKGVDTAVVATEKKVPDSL-VDPKTVTNLYSL-TPTVGCVMTGMQADSRYQVQRAR 95 (291)
Q Consensus 37 ~t~vgi~~~~~vv~a~~~~~~~~l-~~~~~~~ki~~i-~~~~~~~~~G~~~D~~~~~~~~~ 95 (291)
||+|+++-++-||||.|-..+-.- +-..+.+|+-+| +.++..+++|-++|+..|.+...
T Consensus 5 TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl~~gkvlaGFAGstADaftLfe~fe 65 (178)
T COG5405 5 TTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFE 65 (178)
T ss_pred EEEEEEeeCCeEEEecCceEeecceeeeccHHHHHHHcCCcEEEEecccchhHHHHHHHHH
Confidence 899999999999999999876532 222233454444 55899999999999999888765
No 100
>KOG3361|consensus
Probab=82.87 E-value=2.8 Score=32.47 Aligned_cols=44 Identities=27% Similarity=0.302 Sum_probs=40.5
Q ss_pred EEECCCCceEeeeEEEecCCchHHHHHHHHhccCCCCCCHHHHHHH
Q psy8777 241 YKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKKKTNYTGDETIQL 286 (291)
Q Consensus 241 y~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~t~~eai~l 286 (291)
..+|.+|.+...+|-.-|-||..+-+-+-..|-+ ++|+||+.++
T Consensus 71 Ikvd~~g~I~dakFKTFGCGSAIASSS~aTewvk--gkt~dea~kI 114 (157)
T KOG3361|consen 71 IKVDDSGVIEDAKFKTFGCGSAIASSSLATEWVK--GKTLDEALKI 114 (157)
T ss_pred EEECCCCcEEEeeeeecccchHhhhhHHHHHHHc--cccHHHHHhc
Confidence 4788899999999999999999999999999999 9999999864
No 101
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=67.50 E-value=6.3 Score=26.43 Aligned_cols=32 Identities=22% Similarity=0.320 Sum_probs=26.9
Q ss_pred eeeCC-CCcchhhhHHHHHHhcCCceEEEEecCC
Q psy8777 14 TIFSP-EGRLYQVEYAFKAINQGGVTSVAVKGVD 46 (291)
Q Consensus 14 ~~fsp-~g~~~q~eya~~av~~g~~t~vgi~~~~ 46 (291)
|.||+ +|.+.--||..+|.++| ..++||.-.+
T Consensus 6 t~~S~~~~~~~~~~~~~~a~~~g-~~~v~iTDh~ 38 (67)
T smart00481 6 SDYSLLDGALSPEELVKRAKELG-LKAIAITDHG 38 (67)
T ss_pred cCCccccccCCHHHHHHHHHHcC-CCEEEEeeCC
Confidence 45888 99999999999999998 6888887554
No 102
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=59.41 E-value=16 Score=22.89 Aligned_cols=34 Identities=29% Similarity=0.356 Sum_probs=26.5
Q ss_pred EecCCchHHHHHHHHhc-cCCCCCCHHHHHHHHHhhC
Q psy8777 256 SVGVKTTEANSYLEKKF-KKKTNYTGDETIQLAISCL 291 (291)
Q Consensus 256 a~G~gs~~~~~~Le~~~-~~~~~~t~~eai~l~~~~l 291 (291)
+.|+....+...+.+.. .+ +++.+|.|+.+++.|
T Consensus 12 ~LGy~~~e~~~av~~~~~~~--~~~~e~~ik~aLk~L 46 (47)
T PF07499_consen 12 SLGYSKAEAQKAVSKLLEKP--GMDVEELIKQALKLL 46 (47)
T ss_dssp HTTS-HHHHHHHHHHHHHST--TS-HHHHHHHHHCCC
T ss_pred HcCCCHHHHHHHHHHhhcCC--CCCHHHHHHHHHhhc
Confidence 35888888899998887 56 899999999998754
No 103
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=51.68 E-value=12 Score=31.33 Aligned_cols=59 Identities=10% Similarity=0.003 Sum_probs=41.5
Q ss_pred ceEEEEecCCeEEEEEeccCCCCccCCCCcceeEee---cCc-EEEEEeccccchhhhhhhhc
Q psy8777 37 VTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSL---TPT-VGCVMTGMQADSRYQVQRAR 95 (291)
Q Consensus 37 ~t~vgi~~~~~vv~a~~~~~~~~l~~~~~~~ki~~i---~~~-~~~~~~G~~~D~~~~~~~~~ 95 (291)
|-|||++...|.|+++|.|.+.+.-.-.+.+|+|-. .|+ +.++.+|=-|=.|.++..+.
T Consensus 2 TYCv~l~l~~GlVf~sDsRTNAGvD~istfkKl~~~~~pGdRvlvl~taGNLA~tQaV~~ll~ 64 (255)
T COG3484 2 TYCVGLILDFGLVFGSDSRTNAGVDYISTFKKLFVFELPGDRVLVLCTAGNLAITQAVLHLLD 64 (255)
T ss_pred ceEEEEEeccceEEecccccccCchHHHHHHHHhhccCCCceEEEEEecCccHHHHHHHHHHH
Confidence 358999999999999999987654222334565543 333 56678898888887665543
No 104
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=41.33 E-value=19 Score=21.05 Aligned_cols=11 Identities=27% Similarity=0.652 Sum_probs=6.4
Q ss_pred eeeeeCCCCcc
Q psy8777 12 HITIFSPEGRL 22 (291)
Q Consensus 12 ~~~~fsp~g~~ 22 (291)
..-.|||||+-
T Consensus 12 ~~p~~SpDGk~ 22 (39)
T PF07676_consen 12 GSPAWSPDGKY 22 (39)
T ss_dssp EEEEE-TTSSE
T ss_pred cCEEEecCCCE
Confidence 33449999864
No 105
>COG4831 Roadblock/LC7 domain [Function unknown]
Probab=39.62 E-value=13 Score=27.10 Aligned_cols=13 Identities=62% Similarity=1.101 Sum_probs=9.3
Q ss_pred eeeeCCCCcchhhhH
Q psy8777 13 ITIFSPEGRLYQVEY 27 (291)
Q Consensus 13 ~~~fsp~g~~~q~ey 27 (291)
...||||||| |||
T Consensus 17 AGefs~DGkL--v~Y 29 (109)
T COG4831 17 AGEFSPDGKL--VEY 29 (109)
T ss_pred eceeCCCCce--EEe
Confidence 3469999988 455
No 106
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=35.74 E-value=33 Score=27.22 Aligned_cols=29 Identities=28% Similarity=0.454 Sum_probs=24.2
Q ss_pred eeeC-CCCcchhhhHHHHHHhcCCceEEEEe
Q psy8777 14 TIFS-PEGRLYQVEYAFKAINQGGVTSVAVK 43 (291)
Q Consensus 14 ~~fs-p~g~~~q~eya~~av~~g~~t~vgi~ 43 (291)
|.|| ++|..---||..+|.++| .+.|||.
T Consensus 7 T~~s~~dg~~~~~e~v~~A~~~G-l~~i~iT 36 (175)
T PF02811_consen 7 TKYSILDGKDSPEEYVEQAKEKG-LDAIAIT 36 (175)
T ss_dssp -TTTSSTSSSSHHHHHHHHHHTT-ESEEEEE
T ss_pred ccCcchhhcCCHHHHHHHHHHcC-CCEEEEc
Confidence 3488 899998899999999998 7888876
No 107
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=34.92 E-value=46 Score=27.74 Aligned_cols=28 Identities=18% Similarity=0.135 Sum_probs=23.5
Q ss_pred hHHHHHHHHhccCCCCCCHHHHHHHHHhhC
Q psy8777 262 TEANSYLEKKFKKKTNYTGDETIQLAISCL 291 (291)
Q Consensus 262 ~~~~~~Le~~~~~~~~~t~~eai~l~~~~l 291 (291)
+.+..+|.++|++ .|+++++.++..++|
T Consensus 131 ~ia~~~lkk~~~~--k~~l~~i~~i~~~i~ 158 (194)
T PF09894_consen 131 EIANKELKKYWKP--KMSLKDIENIFEKIM 158 (194)
T ss_pred HHHHHHHHHhcCC--CCCHHHHHHHHHHHH
Confidence 5677788888988 999999999988764
No 108
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=34.77 E-value=28 Score=28.98 Aligned_cols=36 Identities=14% Similarity=0.182 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHHHh
Q psy8777 176 SRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVY 214 (291)
Q Consensus 176 ~~~~~~~~~~e~~~~~~~~~~~~s~~~l~~~l~~~~~~~ 214 (291)
-+...+.+..+.+.+. ...++++++.+.+..+++..
T Consensus 126 Nk~~K~ia~~~lkk~~---~~k~~l~~i~~i~~~i~~~~ 161 (194)
T PF09894_consen 126 NKFTKEIANKELKKYW---KPKMSLKDIENIFEKIMEEV 161 (194)
T ss_pred CHHHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHHHHH
Confidence 4555555555554443 25789999999999998655
No 109
>COG1754 Uncharacterized C-terminal domain of topoisomerase IA [General function prediction only]
Probab=32.27 E-value=35 Score=30.24 Aligned_cols=56 Identities=20% Similarity=0.294 Sum_probs=37.4
Q ss_pred EEEEeCCCC-cEEEEECCCCceEeeeEEEecCC-chHHHHHHHHhccCCCCCCHHHHHHHHH
Q psy8777 229 LISYDENEG-PLIYKTDPAGYYCSFKAVSVGVK-TTEANSYLEKKFKKKTNYTGDETIQLAI 288 (291)
Q Consensus 229 i~G~d~~~g-p~Ly~~d~~G~~~~~~~~a~G~g-s~~~~~~Le~~~~~~~~~t~~eai~l~~ 288 (291)
+.|.|+..| +-....-..|-|... ..|.. -..-..-|-+.|.+ .+||+|+|++|+.
T Consensus 77 ~LG~DP~tG~eI~~k~GryGPYVq~---~lg~~~~kpkraSLpkg~~~-e~ItLE~AL~LLs 134 (298)
T COG1754 77 VLGIDPETGEEIYLKNGRYGPYVQE---QLGDPKPKPKRASLPKGWKP-ETITLEKALKLLS 134 (298)
T ss_pred ccccCCCCCceeEEeccCCCceeee---ecCCCCCCcccccCCCCCCh-hhCcHHHHHHHHc
Confidence 446776566 444566678876654 45655 44555566677776 4899999999863
No 110
>PF11216 DUF3012: Protein of unknown function (DUF3012); InterPro: IPR021379 This family of proteins with unknown function is restricted to Gammaproteobacteria.
Probab=27.78 E-value=1.2e+02 Score=17.51 Aligned_cols=30 Identities=20% Similarity=0.337 Sum_probs=21.2
Q ss_pred CchHHHHHHHHhccCCCCCCHHHHHHHHHhhC
Q psy8777 260 KTTEANSYLEKKFKKKTNYTGDETIQLAISCL 291 (291)
Q Consensus 260 gs~~~~~~Le~~~~~~~~~t~~eai~l~~~~l 291 (291)
||..=..-|++.=+. +-|.+||.+.|..|+
T Consensus 2 GSe~WC~~m~~kpK~--dWtanea~~fAKhCv 31 (32)
T PF11216_consen 2 GSEAWCEDMKEKPKG--DWTANEAADFAKHCV 31 (32)
T ss_pred ChHHHHHHHhhCCcc--cCcHhHHHHHHHhhc
Confidence 344444555555445 899999999999885
No 111
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=26.30 E-value=95 Score=25.39 Aligned_cols=37 Identities=30% Similarity=0.366 Sum_probs=26.5
Q ss_pred eCCCCcchhhhHHHHHHhcCCceEEEEecCCeEEEEE
Q psy8777 16 FSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVAT 52 (291)
Q Consensus 16 fsp~g~~~q~eya~~av~~g~~t~vgi~~~~~vv~a~ 52 (291)
+||.|.=.-|=-|.|+.+.-|.++||+.++||-=|+-
T Consensus 116 ISTSGNS~nVl~Ai~~Ak~~gm~vI~ltG~~GG~~~~ 152 (176)
T COG0279 116 ISTSGNSKNVLKAIEAAKEKGMTVIALTGKDGGKLAG 152 (176)
T ss_pred EeCCCCCHHHHHHHHHHHHcCCEEEEEecCCCccccc
Confidence 7787776666666655554458999999999965543
No 112
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=24.75 E-value=1.5e+02 Score=18.73 Aligned_cols=34 Identities=21% Similarity=0.152 Sum_probs=28.0
Q ss_pred EEECCCCceEeeeEEEecCCchHHHHHHHHhccC
Q psy8777 241 YKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKK 274 (291)
Q Consensus 241 y~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~ 274 (291)
+.++|.|.....--...|..+..+...||+..-.
T Consensus 3 ~~I~~dG~V~~~v~G~~G~~C~~~t~~lE~~LG~ 36 (48)
T PF11211_consen 3 FTIYPDGRVEEEVEGFKGSSCLEATAALEEALGT 36 (48)
T ss_pred EEECCCcEEEEEEEeccChhHHHHHHHHHHHhCc
Confidence 6789999998887888888888888888876543
No 113
>PF08140 Cuticle_1: Crustacean cuticle protein repeat; InterPro: IPR012539 This family consists of the cuticle proteins from the Cancer pagurus (Rock crab) and the Homarus americanus (American lobster). These proteins are isolated from the calcified regions of the crustacean and they contain two copies of an 18 residue sequence motif, which thus far has been found only in crustacean calcified exoskeletons [].; GO: 0042302 structural constituent of cuticle
Probab=24.27 E-value=1e+02 Score=18.74 Aligned_cols=29 Identities=28% Similarity=0.465 Sum_probs=20.4
Q ss_pred eeCCCCcchhhhHHHHHHhcCCceEEEEecCCeEEEE
Q psy8777 15 IFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVA 51 (291)
Q Consensus 15 ~fsp~g~~~q~eya~~av~~g~~t~vgi~~~~~vv~a 51 (291)
+-.|||++.|+.-. .+.|.+.+..|+|+.
T Consensus 5 ii~~dG~~~q~~~~--------~a~ivl~GpSG~v~s 33 (40)
T PF08140_consen 5 IITPDGTNVQFPHG--------VANIVLIGPSGAVLS 33 (40)
T ss_pred eECCCCCEEECCcc--------cceEEEECCceEEee
Confidence 35799999998532 235777777887765
No 114
>PRK07328 histidinol-phosphatase; Provisional
Probab=23.40 E-value=79 Score=27.65 Aligned_cols=31 Identities=16% Similarity=0.111 Sum_probs=25.6
Q ss_pred eeeCCCCcchhhhHHHHHHhcCCceEEEEecC
Q psy8777 14 TIFSPEGRLYQVEYAFKAINQGGVTSVAVKGV 45 (291)
Q Consensus 14 ~~fsp~g~~~q~eya~~av~~g~~t~vgi~~~ 45 (291)
|.||++|.---=||+.+|+++| .+.+|+.-.
T Consensus 10 T~~s~~~~~~~ee~v~~A~~~G-l~~i~~TdH 40 (269)
T PRK07328 10 TPLCGHAVGTPEEYVQAARRAG-LKEIGFTDH 40 (269)
T ss_pred CCCCCCCCCCHHHHHHHHHHCC-CCEEEEecC
Confidence 3599998887778999999998 688888744
No 115
>PRK06361 hypothetical protein; Provisional
Probab=23.12 E-value=83 Score=26.25 Aligned_cols=31 Identities=32% Similarity=0.429 Sum_probs=26.5
Q ss_pred eeeCCCCcchhhhHHHHHHhcCCceEEEEecCC
Q psy8777 14 TIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVD 46 (291)
Q Consensus 14 ~~fsp~g~~~q~eya~~av~~g~~t~vgi~~~~ 46 (291)
|+|| +|+.---|++.+|.+.| ...+||.-..
T Consensus 3 t~~s-dg~~~~~e~v~~A~~~G-l~~i~iTDH~ 33 (212)
T PRK06361 3 TIFS-DGELIPSELVRRARVLG-YRAIAITDHA 33 (212)
T ss_pred cccc-CCCCCHHHHHHHHHHcC-CCEEEEecCC
Confidence 5688 89999999999999998 6888888654
No 116
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=23.06 E-value=79 Score=27.39 Aligned_cols=30 Identities=20% Similarity=0.188 Sum_probs=25.3
Q ss_pred eeCCCCcchhhhHHHHHHhcCCceEEEEecC
Q psy8777 15 IFSPEGRLYQVEYAFKAINQGGVTSVAVKGV 45 (291)
Q Consensus 15 ~fsp~g~~~q~eya~~av~~g~~t~vgi~~~ 45 (291)
.||++|+=.--||+..|+++| .+.+|+.--
T Consensus 8 ~~s~d~~~~~ee~v~~A~~~G-l~~i~~TdH 37 (253)
T TIGR01856 8 PFCAHGTDTLEEVVQEAIQLG-FEEICFTEH 37 (253)
T ss_pred CCCCCCCCCHHHHHHHHHHcC-CCEEEecCC
Confidence 599999877778999999998 688888744
No 117
>PRK09248 putative hydrolase; Validated
Probab=22.90 E-value=79 Score=27.17 Aligned_cols=38 Identities=24% Similarity=0.162 Sum_probs=30.3
Q ss_pred Cccceee-eeCCCCcchhhhHHHHHHhcCCceEEEEecCC
Q psy8777 8 GFDRHIT-IFSPEGRLYQVEYAFKAINQGGVTSVAVKGVD 46 (291)
Q Consensus 8 ~yd~~~~-~fsp~g~~~q~eya~~av~~g~~t~vgi~~~~ 46 (291)
.+|..+= .||++|+.---||+..|.+.| .+.+|+.-..
T Consensus 4 ~~D~H~HT~~s~~~~~~~~e~v~~A~~~G-~~~i~iTdH~ 42 (246)
T PRK09248 4 PVDTHTHTIASGHAYSTLHENAAEAKQKG-LKLFAITDHG 42 (246)
T ss_pred ceEeCcCCCCCCCCCCCHHHHHHHHHHCC-CCEEEECCCC
Confidence 4566553 499999888889999999998 6999998553
No 118
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]
Probab=22.59 E-value=89 Score=26.91 Aligned_cols=28 Identities=32% Similarity=0.395 Sum_probs=23.5
Q ss_pred eeeCCCCcchhhhHHHHHHhcCCceEEEEe
Q psy8777 14 TIFSPEGRLYQVEYAFKAINQGGVTSVAVK 43 (291)
Q Consensus 14 ~~fsp~g~~~q~eya~~av~~g~~t~vgi~ 43 (291)
|+|| +|..--.|++.+|.+.|- ..++++
T Consensus 9 T~~s-dg~~~~~e~~~~A~~~g~-~~~~iT 36 (237)
T COG1387 9 TVFS-DGEATPEEMVEAAIELGL-EYIAIT 36 (237)
T ss_pred cccc-cCCCCHHHHHHHHHHcCC-eEEEEe
Confidence 5699 999999999999999985 666654
No 119
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.36 E-value=29 Score=31.05 Aligned_cols=15 Identities=53% Similarity=1.015 Sum_probs=10.9
Q ss_pred eeeCCCCcchhhhHHHHH
Q psy8777 14 TIFSPEGRLYQVEYAFKA 31 (291)
Q Consensus 14 ~~fsp~g~~~q~eya~~a 31 (291)
-+|||||+++ ||.|.
T Consensus 119 Gvfs~dG~~L---YATEn 133 (366)
T COG3490 119 GVFSPDGRLL---YATEN 133 (366)
T ss_pred cccCCCCcEE---EeecC
Confidence 4699999976 66443
No 120
>PF05113 DUF693: Protein of unknown function (DUF693); InterPro: IPR007800 This family consists of uncharacterised proteins from Borrelia burgdorferi.
Probab=22.27 E-value=2.7e+02 Score=24.71 Aligned_cols=60 Identities=22% Similarity=0.262 Sum_probs=40.7
Q ss_pred eeeeEEEEeCCCCcEEEEECCCCceEeeeEEEecCCchHHHHHHH-HhccCCCCCCHHHHHHHH
Q psy8777 225 CSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLE-KKFKKKTNYTGDETIQLA 287 (291)
Q Consensus 225 ~~~li~G~d~~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le-~~~~~~~~~t~~eai~l~ 287 (291)
-+++.+|+= |+-+=..-|.|.+.-.--.-.=+.+.+...-|+ +.++..++||.+||++.+
T Consensus 97 y~FImaGyL---g~Pmstdyp~gDFsvelev~LlsksnFfnRkl~~~e~k~fKg~TV~daI~sv 157 (314)
T PF05113_consen 97 YDFIMAGYL---GAPMSTDYPGGDFSVELEVYLLSKSNFFNRKLDGKEYKNFKGMTVQDAIKSV 157 (314)
T ss_pred ccEEeeccc---CCCceeccCCCceEEEEEEEEeecchhHhhhhccccccccCCcCHHHHHHHh
Confidence 467888882 444445558888776655666667777777772 233445689999999876
Done!