Query psy8777
Match_columns 291
No_of_seqs 249 out of 2247
Neff 8.7
Searched_HMMs 29240
Date Fri Aug 16 19:02:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8777.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8777hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h4p_A Proteasome subunit alph 100.0 1.2E-52 4E-57 367.5 19.5 198 1-291 4-201 (264)
2 1iru_A 20S proteasome; cell cy 100.0 2.9E-51 9.9E-56 356.2 22.5 201 1-291 1-202 (246)
3 3nzj_F Proteasome component C1 100.0 3E-51 1E-55 361.7 21.6 195 4-291 3-200 (288)
4 1ryp_A 20S proteasome; multica 100.0 2.5E-51 8.4E-56 356.0 18.9 195 7-291 1-201 (243)
5 1iru_B 20S proteasome; cell cy 100.0 1.2E-50 4.3E-55 349.6 22.5 193 6-291 2-194 (233)
6 1iru_G 20S proteasome; cell cy 100.0 7.7E-51 2.6E-55 354.9 21.2 196 4-291 2-197 (254)
7 1yar_A Proteasome alpha subuni 100.0 1.5E-50 5.3E-55 349.0 22.2 193 6-291 5-197 (233)
8 1ryp_C 20S proteasome; multica 100.0 2.1E-50 7.3E-55 350.4 22.3 192 8-291 4-196 (244)
9 1iru_D 20S proteasome; cell cy 100.0 2.5E-50 8.5E-55 350.6 20.5 191 9-291 3-195 (248)
10 1j2p_A Alpha-ring, proteasome 100.0 4.3E-50 1.5E-54 348.7 21.8 196 1-291 1-196 (246)
11 1ryp_G 20S proteasome; multica 100.0 6.9E-50 2.3E-54 346.9 22.1 193 6-291 1-196 (244)
12 1ryp_D 20S proteasome; multica 100.0 6.2E-50 2.1E-54 346.8 21.8 192 8-291 1-197 (241)
13 1iru_E 20S proteasome; cell cy 100.0 5.4E-50 1.9E-54 347.2 19.2 193 6-291 5-202 (241)
14 1ryp_B 20S proteasome; multica 100.0 2.9E-49 1E-53 344.3 21.9 193 7-291 3-196 (250)
15 1iru_C 20S proteasome; cell cy 100.0 4.6E-48 1.6E-52 338.6 23.6 194 7-291 3-197 (261)
16 1iru_F 20S proteasome; cell cy 100.0 3.7E-48 1.3E-52 339.3 21.6 193 6-291 3-195 (263)
17 1ryp_F 20S proteasome; multica 100.0 1.7E-44 5.8E-49 311.2 21.0 192 96-291 3-196 (233)
18 1ryp_E 20S proteasome; multica 100.0 4.3E-44 1.5E-48 310.4 20.3 190 99-291 1-196 (242)
19 1q5q_A Proteasome alpha-type s 100.0 8.4E-37 2.9E-41 266.6 18.9 177 103-291 5-188 (259)
20 3mi0_A Proteasome subunit alph 100.0 9.4E-36 3.2E-40 257.7 20.8 167 113-291 16-188 (248)
21 1yar_H Proteasome beta subunit 100.0 1E-33 3.6E-38 241.1 18.8 163 120-291 4-167 (217)
22 3h4p_a Proteasome subunit beta 100.0 5.5E-34 1.9E-38 243.1 16.8 160 126-291 2-163 (219)
23 1iru_M 20S proteasome; cell cy 100.0 1.5E-33 5.2E-38 239.6 19.5 164 121-291 6-179 (213)
24 1ryp_E 20S proteasome; multica 100.0 3.9E-34 1.3E-38 247.8 15.7 208 10-231 1-215 (242)
25 1ryp_H 20S proteasome; multica 100.0 8.4E-34 2.9E-38 239.7 17.1 165 118-291 3-168 (205)
26 1j2q_H Proteasome beta subunit 100.0 1.7E-33 5.8E-38 237.3 18.8 159 126-291 1-161 (202)
27 1iru_N 20S proteasome; cell cy 100.0 4.6E-34 1.6E-38 243.7 15.2 169 119-291 3-173 (219)
28 1iru_H 20S proteasome; cell cy 100.0 1.5E-33 5.1E-38 238.2 17.5 159 126-291 1-160 (205)
29 1ryp_K 20S proteasome; multica 100.0 1.8E-33 6E-38 236.5 17.7 162 126-291 2-165 (198)
30 1ryp_F 20S proteasome; multica 100.0 2.3E-34 7.8E-39 247.8 11.7 204 7-232 3-217 (233)
31 1ryp_L 20S proteasome; multica 100.0 2.7E-33 9.3E-38 237.8 18.0 160 126-291 1-161 (212)
32 1ryp_N 20S proteasome; multica 100.0 5.8E-34 2E-38 245.3 13.6 170 119-291 3-181 (233)
33 1q5r_H Proteasome beta-type su 100.0 2.5E-33 8.7E-38 247.9 17.6 171 117-291 58-236 (294)
34 1q5q_H Proteasome beta-type su 100.0 3.2E-33 1.1E-37 240.9 17.4 163 126-291 1-171 (235)
35 1ryp_M 20S proteasome; multica 100.0 6.1E-33 2.1E-37 237.2 18.7 165 120-291 5-188 (222)
36 3nzj_K Proteasome component PR 100.0 4.7E-33 1.6E-37 245.4 17.8 169 116-291 67-236 (287)
37 1iru_K 20S proteasome; cell cy 100.0 6.7E-33 2.3E-37 233.5 18.0 162 126-291 2-164 (201)
38 1iru_L 20S proteasome; cell cy 100.0 5.8E-33 2E-37 234.4 17.4 159 126-291 1-160 (204)
39 3nzj_H Proteasome component PU 100.0 7.6E-33 2.6E-37 241.2 18.6 166 117-291 22-188 (261)
40 3unf_H Proteasome subunit beta 100.0 8E-33 2.7E-37 237.7 18.4 158 126-291 1-159 (234)
41 2jay_A Proteasome; hydrolase; 100.0 9.3E-33 3.2E-37 244.1 17.5 173 114-291 48-228 (291)
42 1g0u_M Proteasome component PR 100.0 1.9E-33 6.5E-38 246.4 12.9 175 114-291 31-214 (266)
43 1iru_J 20S proteasome; cell cy 100.0 1.3E-32 4.6E-37 232.4 17.2 163 122-291 6-171 (205)
44 1ryp_J 20S proteasome; multica 100.0 2.7E-32 9.1E-37 230.4 18.3 163 121-291 5-170 (204)
45 1ryp_I 20S proteasome; multica 100.0 3.3E-32 1.1E-36 232.6 18.4 158 126-291 1-159 (222)
46 1iru_I 20S proteasome; cell cy 100.0 1.6E-31 5.5E-36 229.9 18.3 158 126-291 1-159 (234)
47 3unf_N Proteasome subunit beta 100.0 3E-31 1E-35 223.1 15.0 157 126-291 1-159 (199)
48 1m4y_A ATP-dependent protease 99.9 3.6E-26 1.2E-30 187.5 16.1 146 126-287 1-151 (171)
49 1g3k_A ATP-dependent protease 99.9 7.6E-26 2.6E-30 186.1 15.2 147 126-288 1-153 (174)
50 2z3b_A ATP-dependent protease 99.9 1.1E-25 3.9E-30 185.9 14.4 151 123-288 4-160 (180)
51 1q5q_A Proteasome alpha-type s 99.9 4.6E-26 1.6E-30 198.6 9.8 193 15-232 6-213 (259)
52 3mi0_A Proteasome subunit alph 99.9 1.3E-23 4.6E-28 181.5 13.0 189 17-233 8-216 (248)
53 2jay_A Proteasome; hydrolase; 99.8 3.8E-20 1.3E-24 163.4 9.8 184 7-212 23-229 (291)
54 3nzj_H Proteasome component PU 99.8 9.9E-20 3.4E-24 158.4 11.1 186 28-232 22-209 (261)
55 1yar_H Proteasome beta subunit 99.8 1.8E-19 6.1E-24 153.1 12.0 176 30-231 3-187 (217)
56 1ryp_H 20S proteasome; multica 99.8 4.2E-20 1.4E-24 155.6 7.9 180 29-230 3-187 (205)
57 3nzj_K Proteasome component PR 99.8 1.1E-19 3.8E-24 160.0 10.0 190 17-230 51-255 (287)
58 1iru_N 20S proteasome; cell cy 99.8 7.5E-20 2.5E-24 155.7 7.6 192 29-246 2-205 (219)
59 1ryp_N 20S proteasome; multica 99.8 6.9E-20 2.4E-24 157.3 6.9 197 29-249 2-217 (233)
60 1iru_J 20S proteasome; cell cy 99.8 2.9E-19 9.9E-24 150.5 9.8 175 33-231 6-191 (205)
61 1g0u_M Proteasome component PR 99.8 7.6E-20 2.6E-24 159.9 6.4 202 24-249 30-250 (266)
62 1q5r_H Proteasome beta-type su 99.8 1.4E-19 4.7E-24 159.9 8.0 165 28-213 58-238 (294)
63 1iru_M 20S proteasome; cell cy 99.8 6.7E-19 2.3E-23 149.1 11.7 180 32-231 6-199 (213)
64 1iru_H 20S proteasome; cell cy 99.8 7E-19 2.4E-23 148.1 10.2 178 37-231 1-180 (205)
65 1j2q_H Proteasome beta subunit 99.8 1.1E-18 3.8E-23 146.6 11.3 170 37-230 1-180 (202)
66 1ryp_J 20S proteasome; multica 99.8 2.1E-18 7.3E-23 145.0 13.1 175 32-231 5-190 (204)
67 3h4p_a Proteasome subunit beta 99.8 4.7E-19 1.6E-23 150.7 7.6 171 37-230 2-182 (219)
68 1ryp_M 20S proteasome; multica 99.8 2.2E-18 7.6E-23 146.8 11.4 186 31-230 5-207 (222)
69 1ryp_K 20S proteasome; multica 99.8 3.2E-18 1.1E-22 143.3 11.9 173 37-230 2-184 (198)
70 1ryp_L 20S proteasome; multica 99.8 2.4E-18 8.2E-23 145.6 11.1 172 37-231 1-181 (212)
71 1iru_B 20S proteasome; cell cy 99.8 9.8E-19 3.4E-23 150.1 8.7 85 94-179 1-85 (233)
72 1iru_K 20S proteasome; cell cy 99.8 5.7E-18 2E-22 142.1 12.9 179 37-230 2-183 (201)
73 1ryp_A 20S proteasome; multica 99.8 1.5E-18 5.1E-23 149.9 8.9 82 97-179 2-84 (243)
74 3h4p_A Proteasome subunit alph 99.7 1.4E-18 4.6E-23 151.7 7.7 84 95-179 9-92 (264)
75 3unf_H Proteasome subunit beta 99.7 6.9E-18 2.4E-22 144.6 11.8 178 37-232 1-180 (234)
76 1yar_A Proteasome alpha subuni 99.7 2.7E-18 9.2E-23 147.4 9.2 85 94-179 4-88 (233)
77 1iru_L 20S proteasome; cell cy 99.7 6.6E-18 2.2E-22 142.1 11.1 170 37-230 1-179 (204)
78 1j2p_A Alpha-ring, proteasome 99.7 3.3E-18 1.1E-22 148.0 8.9 83 94-177 4-86 (246)
79 1iru_E 20S proteasome; cell cy 99.7 4.5E-18 1.5E-22 146.7 9.7 84 95-179 5-88 (241)
80 1iru_G 20S proteasome; cell cy 99.7 5E-18 1.7E-22 147.5 8.9 85 96-181 5-89 (254)
81 1ryp_D 20S proteasome; multica 99.7 6.1E-18 2.1E-22 145.8 9.3 82 97-179 1-83 (241)
82 1ryp_C 20S proteasome; multica 99.7 7.8E-18 2.7E-22 145.5 9.8 82 97-179 4-86 (244)
83 3nzj_F Proteasome component C1 99.7 5.4E-18 1.8E-22 149.3 8.6 84 95-179 5-88 (288)
84 1ryp_I 20S proteasome; multica 99.7 1.5E-17 5.1E-22 141.7 11.1 177 37-231 1-179 (222)
85 1iru_D 20S proteasome; cell cy 99.7 5.3E-18 1.8E-22 146.8 8.0 81 98-179 3-83 (248)
86 1ryp_B 20S proteasome; multica 99.7 6.2E-18 2.1E-22 146.6 8.4 84 97-181 4-87 (250)
87 1ryp_G 20S proteasome; multica 99.7 8.4E-18 2.9E-22 145.2 9.0 83 96-179 2-84 (244)
88 1q5q_H Proteasome beta-type su 99.7 1.5E-17 5.1E-22 142.9 9.8 157 37-213 1-173 (235)
89 1iru_I 20S proteasome; cell cy 99.7 3.4E-17 1.2E-21 140.5 12.0 170 37-231 1-179 (234)
90 3unf_N Proteasome subunit beta 99.7 9.6E-18 3.3E-22 140.5 8.3 168 37-230 1-178 (199)
91 1iru_A 20S proteasome; cell cy 99.7 1.2E-17 4.2E-22 144.4 8.7 83 96-179 7-90 (246)
92 1g3k_A ATP-dependent protease 99.7 4.1E-17 1.4E-21 133.8 7.3 150 37-211 1-157 (174)
93 2z3b_A ATP-dependent protease 99.7 2.3E-17 8E-22 136.0 5.7 152 33-210 3-163 (180)
94 1m4y_A ATP-dependent protease 99.6 3.4E-16 1.1E-20 128.0 7.6 148 37-211 1-156 (171)
95 1iru_C 20S proteasome; cell cy 99.1 8.9E-11 3.1E-15 102.0 7.7 90 131-232 127-218 (261)
96 1iru_F 20S proteasome; cell cy 99.1 2.3E-10 8E-15 99.5 7.7 91 131-232 125-217 (263)
97 3jx9_A Putative phosphoheptose 47.4 13 0.00046 29.2 3.1 31 13-44 81-112 (170)
98 2yxo_A Histidinol phosphatase; 41.5 14 0.00047 30.6 2.5 30 14-44 8-37 (267)
99 3rj2_X ORF158L protein, putati 27.9 23 0.00077 26.0 1.3 16 8-23 54-69 (138)
100 3hvz_A Uncharacterized protein 25.8 20 0.00068 24.2 0.7 18 9-26 4-21 (78)
101 1ixs_A Holliday junction DNA h 24.4 1E+02 0.0034 19.6 3.9 35 255-291 25-61 (62)
102 3s0r_A De novo designed helica 21.5 38 0.0013 17.6 1.1 11 25-35 7-17 (30)
103 1m65_A Hypothetical protein YC 20.9 51 0.0018 26.7 2.5 30 15-45 11-40 (245)
104 1eoq_A GAG polyprotein capsid 20.2 1.2E+02 0.0041 21.2 3.8 28 261-290 45-72 (96)
No 1
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.2e-52 Score=367.55 Aligned_cols=198 Identities=34% Similarity=0.640 Sum_probs=170.5
Q ss_pred CCCCCCCCccceeeeeCCCCcchhhhHHHHHHhcCCceEEEEecCCeEEEEEeccCCCCccCCCCcceeEeecCcEEEEE
Q psy8777 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVM 80 (291)
Q Consensus 1 ~~~~~~~~yd~~~~~fsp~g~~~q~eya~~av~~g~~t~vgi~~~~~vv~a~~~~~~~~l~~~~~~~ki~~i~~~~~~~~ 80 (291)
|.|.++++||+++|+|||||||||||||+|||++|+ |+|||+++||||||+|+|.+++++.+++.+|||+|++|++|++
T Consensus 4 ~~~~~~~~yd~~~t~fSp~Grl~QvEYA~~av~~Gt-t~vgi~~~dgVVlaaD~r~~~~li~~~~~~KI~~i~d~i~~~~ 82 (264)
T 3h4p_A 4 MQMVPPSAYDRAITVFSPEGRLYQVEYAREAVRRGT-TAIGIACKDGVVLAVDRRITSKLVKIRSIEKIFQIDDHVAAAT 82 (264)
T ss_dssp ------------CCCCCSSSSCHHHHHHHHHHHHSC-CEEEECCSSEEEEEEECCCCSTTBCTTTCCCEEEEETTEEEEE
T ss_pred CcCCCccccCCCcceECCCCeeHHHHhHHHHHhcCC-cEEEEEECCEEEEEEecCccCCccccCccccEEEecCcEEEEe
Confidence 677789999999999999999999999999999995 9999999999999999999988887777888888888888888
Q ss_pred eccccchhhhhhhhcccccccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEE
Q psy8777 81 TGMQADSRYQVQRARAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYS 160 (291)
Q Consensus 81 ~G~~~D~~~~~~~~~~~yd~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~ 160 (291)
||+.+|+|.+++.+
T Consensus 83 aG~~aD~~~l~~~~------------------------------------------------------------------ 96 (264)
T 3h4p_A 83 SGLVADARVLIDRA------------------------------------------------------------------ 96 (264)
T ss_dssp EECSHHHHHHHTTH------------------------------------------------------------------
T ss_pred ccchHHHHHHHHHH------------------------------------------------------------------
Confidence 88888888775543
Q ss_pred ecCcEEEEeecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEE
Q psy8777 161 LTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLI 240 (291)
Q Consensus 161 i~~~~~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~L 240 (291)
+.+++.|++.++.+++++.+++.|+.++|.|+++.+.|||+++++|+|||+ +||+|
T Consensus 97 -----------------------r~~~~~y~~~~~~~i~v~~la~~l~~~~~~yt~~~~~rP~~v~~lvaG~D~-~gp~L 152 (264)
T 3h4p_A 97 -----------------------RLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDK-NEARL 152 (264)
T ss_dssp -----------------------HHHHHHHHHTTCSCCCHHHHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEET-TEEEE
T ss_pred -----------------------HHHHHhhHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCCeeEEEEEEEEeC-CcCEE
Confidence 234556666788899999999999999999999888999999999999996 78999
Q ss_pred EEECCCCceEeeeEEEecCCchHHHHHHHHhccCCCCCCHHHHHHHHHhhC
Q psy8777 241 YKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKKKTNYTGDETIQLAISCL 291 (291)
Q Consensus 241 y~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~t~~eai~l~~~~l 291 (291)
|.+||+|++.+++++|+|+|+.+++++||+.|++ +||++||++++++||
T Consensus 153 y~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~--~ms~eea~~la~~al 201 (264)
T 3h4p_A 153 FETDPSGALIEYKATAIGSGRPVVMELLEKEYRD--DITLDEGLELAITAL 201 (264)
T ss_dssp EEECTTCCCEEESEEEESTTHHHHTTTHHHHCCT--TCCSHHHHHHHHHHH
T ss_pred EEECCCceEEecCeEEECCCHHHHHHHHHHhccC--CCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 999999999999985
No 2
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=100.00 E-value=2.9e-51 Score=356.22 Aligned_cols=201 Identities=73% Similarity=1.165 Sum_probs=175.4
Q ss_pred CCCCCCCCccceeeeeCCCCcchhhhHHHHHHhc-CCceEEEEecCCeEEEEEeccCCCCccCCCCcceeEeecCcEEEE
Q psy8777 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQ-GGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCV 79 (291)
Q Consensus 1 ~~~~~~~~yd~~~~~fsp~g~~~q~eya~~av~~-g~~t~vgi~~~~~vv~a~~~~~~~~l~~~~~~~ki~~i~~~~~~~ 79 (291)
|.|+++++||+++|+|||||||||||||+|||++ | +|+|||+++||||||+|+|.++++..+++.+||++|++|++|+
T Consensus 1 ~~m~~~~~yd~~~t~fsp~Grl~QvEya~~av~~~G-tt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~ 79 (246)
T 1iru_A 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGG-LTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCV 79 (246)
T ss_dssp -CCSCCCTTTTTSSCCCTTSCCHHHHHHHHHHHTTC-CEEEEEECSSEEEEEEECCCCCSSBCGGGCCSEEESSSSCEEE
T ss_pred CCCCccCCcCCCCccCCCCCeehHHHHHHHHHhcCC-CCEEEEEeCCEEEEEEeecCCCcccCCCccCceEEECCCEEEE
Confidence 6677778999999999999999999999999999 8 5999999999999999999987776666666776666666666
Q ss_pred EeccccchhhhhhhhcccccccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEE
Q psy8777 80 MTGMQADSRYQVQRARAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLY 159 (291)
Q Consensus 80 ~~G~~~D~~~~~~~~~~~yd~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~ 159 (291)
+||+.+|+|.+++.+
T Consensus 80 ~aG~~aD~~~l~~~~----------------------------------------------------------------- 94 (246)
T 1iru_A 80 MTGMTADSRSQVQRA----------------------------------------------------------------- 94 (246)
T ss_dssp EEECHHHHHHHHHHH-----------------------------------------------------------------
T ss_pred EeccHHHHHHHHHHH-----------------------------------------------------------------
Confidence 666666666655544
Q ss_pred EecCcEEEEeecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcE
Q psy8777 160 SLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPL 239 (291)
Q Consensus 160 ~i~~~~~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~ 239 (291)
+.+++.|++.++++++++.+++.+++++|.|+++.+.||++++++|+|||+++||+
T Consensus 95 ------------------------~~~~~~~~~~~~~~~~~~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~~~gp~ 150 (246)
T 1iru_A 95 ------------------------RYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQ 150 (246)
T ss_dssp ------------------------HHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETTTEEE
T ss_pred ------------------------HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCCCCcceEEEEEEEeCCCCeE
Confidence 34455567778889999999999999999999988899999999999999757899
Q ss_pred EEEECCCCceEeeeEEEecCCchHHHHHHHHhccCCCCCCHHHHHHHHHhhC
Q psy8777 240 IYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKKKTNYTGDETIQLAISCL 291 (291)
Q Consensus 240 Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~t~~eai~l~~~~l 291 (291)
||.+||+|++.+++++++|+|+++++++||+.|++..+||+|||++++++||
T Consensus 151 Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~ms~eea~~la~~al 202 (246)
T 1iru_A 151 VYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCL 202 (246)
T ss_dssp EEEECTTSCEEEBSEEEEETTHHHHHHHHHHHTTSCCCCCHHHHHHHHHHHH
T ss_pred EEEEcCCeeEEEeeEEEECCCcHHHHHHHHHhhcccCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999766899999999999985
No 3
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=100.00 E-value=3e-51 Score=361.69 Aligned_cols=195 Identities=33% Similarity=0.543 Sum_probs=175.0
Q ss_pred CCCCCccceeeeeCCCCcchhhhHHHHHHhcCCceEEEEecCCeEEEEEeccCCCCccCCCCcceeEeecCcEEEEEecc
Q psy8777 4 GSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVMTGM 83 (291)
Q Consensus 4 ~~~~~yd~~~~~fsp~g~~~q~eya~~av~~g~~t~vgi~~~~~vv~a~~~~~~~~l~~~~~~~ki~~i~~~~~~~~~G~ 83 (291)
+.+++||+++|+|||||||||||||+|||++|+ |+|||+++||||||+|+|.+++++.+++.+|||+|++||+|++||+
T Consensus 3 ~~~~~yd~~~t~fSP~Grl~QvEYA~kAv~~Gt-T~Vgik~kdGVVlAaD~r~t~gl~~~~~~~KI~~I~d~i~~~~aG~ 81 (288)
T 3nzj_F 3 SIGTGYDLSNSVFSPDGRNFQVEYAVKAVENGT-TSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSGL 81 (288)
T ss_dssp --CCCTTSSTTCCCTTSCCHHHHHHHHHHHTSC-CEEEEEETTEEEEEEEEEECCTTBCTTCSCCCEEETTTEEEEEEEC
T ss_pred CCcCCccCCcccCCCCCchHHHHHHHHHHhcCC-cEEEEEECCEEEEEEcCCcccCCccccccceEEEEcCCEEEEecCc
Confidence 447999999999999999999999999999995 9999999999999999999988877766677777777777777777
Q ss_pred ccchhhhhhhhcccccccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecC
Q psy8777 84 QADSRYQVQRARAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTP 163 (291)
Q Consensus 84 ~~D~~~~~~~~~~~yd~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~ 163 (291)
.+|+|.+++.+
T Consensus 82 ~aD~~~l~~~l--------------------------------------------------------------------- 92 (288)
T 3nzj_F 82 IPDGRHLVNRG--------------------------------------------------------------------- 92 (288)
T ss_dssp HHHHHHHHHHH---------------------------------------------------------------------
T ss_pred HHHHHHHHHHH---------------------------------------------------------------------
Confidence 77777665543
Q ss_pred cEEEEeecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEE
Q psy8777 164 TVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKT 243 (291)
Q Consensus 164 ~~~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~ 243 (291)
+.+++.|++.++++++++.+++.++.++|.|+++.++|||+++++|+|||+ +||+||.+
T Consensus 93 --------------------r~e~~~y~~~~~~~i~v~~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D~-~Gp~Ly~i 151 (288)
T 3nzj_F 93 --------------------REEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDK-NGAHLYML 151 (288)
T ss_dssp --------------------HHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEET-TEEEEEEE
T ss_pred --------------------HHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEEEEeC-CCCEEEEE
Confidence 345566677888899999999999999999999889999999999999998 68999999
Q ss_pred CCCCceEeeeEEEecCCchHHHHHHHHh---ccCCCCCCHHHHHHHHHhhC
Q psy8777 244 DPAGYYCSFKAVSVGVKTTEANSYLEKK---FKKKTNYTGDETIQLAISCL 291 (291)
Q Consensus 244 d~~G~~~~~~~~a~G~gs~~~~~~Le~~---~~~~~~~t~~eai~l~~~~l 291 (291)
||+|++.+++++++|+|+++++++||+. |++ +||++||++++++||
T Consensus 152 Dp~G~~~~~~~~aiGsgs~~a~~~Lek~~~~~~~--~ms~eEAv~la~~al 200 (288)
T 3nzj_F 152 EPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPE--GLSAREAVKQAAKII 200 (288)
T ss_dssp CTTSCEEEBSEEEESTTHHHHHHHHHHHHHHCTT--CCCHHHHHHHHHHHH
T ss_pred CCCCCEEEcCEEEEcCcHHHHHHHHHHhccccCC--CCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999 999 999999999999985
No 4
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=100.00 E-value=2.5e-51 Score=356.04 Aligned_cols=195 Identities=53% Similarity=0.867 Sum_probs=171.4
Q ss_pred CCccceeeeeCCCCcchhhhHHHHHHhc-CCceEEEEecCCeEEEEEeccCCCCccCCCCcceeEeecCcEEEEEecccc
Q psy8777 7 AGFDRHITIFSPEGRLYQVEYAFKAINQ-GGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVMTGMQA 85 (291)
Q Consensus 7 ~~yd~~~~~fsp~g~~~q~eya~~av~~-g~~t~vgi~~~~~vv~a~~~~~~~~l~~~~~~~ki~~i~~~~~~~~~G~~~ 85 (291)
++||+++|+|||||||||||||+|||++ |+ |+|||+++||||||+|+|.+++++.+++.+|||+|++|++|++||+.+
T Consensus 1 ~~yd~~~t~fsp~Grl~QvEYA~~av~~~Gt-t~vgi~~~dgVvlaad~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~a 79 (243)
T 1ryp_A 1 AGYDRHITIFSPEGRLYQVEYAFKATNQTNI-NSLAVRGKDCTVVISQKKVPDKLLDPTTVSYIFCISRTIGMVVNGPIP 79 (243)
T ss_dssp CGGGGTSSSCCTTSCCHHHHHHHHHTTTTCC-CEEEEECSSEEEEEEECCCCCTTBCGGGCCSEEECSSSCEEEEESCHH
T ss_pred CCCCCCCceECCCCeeHHHHHHHHHHhcCCC-cEEEEEeCCEEEEEEEecCCccccCCCcCCceEEECCCEEEEEEecHH
Confidence 4799999999999999999999999999 85 999999999999999999987777666666777766666666666666
Q ss_pred chhhhhhhhcccccccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcE
Q psy8777 86 DSRYQVQRARAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTV 165 (291)
Q Consensus 86 D~~~~~~~~~~~yd~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~ 165 (291)
|+|.+++.+
T Consensus 80 D~~~l~~~~----------------------------------------------------------------------- 88 (243)
T 1ryp_A 80 DARNAALRA----------------------------------------------------------------------- 88 (243)
T ss_dssp HHHHHHHHH-----------------------------------------------------------------------
T ss_pred HHHHHHHHH-----------------------------------------------------------------------
Confidence 666555544
Q ss_pred EEEeecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECC
Q psy8777 166 GCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDP 245 (291)
Q Consensus 166 ~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~ 245 (291)
+.+++.|++.++++++++.+++.+++++|.|+++.+.|||+++++|+|||+++||+||.+||
T Consensus 89 ------------------r~~~~~~~~~~~~~~~v~~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~D~~~gp~Ly~~dp 150 (243)
T 1ryp_A 89 ------------------KAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDP 150 (243)
T ss_dssp ------------------HHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETTTEEEEEEECT
T ss_pred ------------------HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccccceEEEEEEEcCCCCcEEEEEcC
Confidence 34555677788899999999999999999999988899999999999999757899999999
Q ss_pred CCceEeeeEEEecCCchHHHHHHHHhccCCC-----CCCHHHHHHHHHhhC
Q psy8777 246 AGYYCSFKAVSVGVKTTEANSYLEKKFKKKT-----NYTGDETIQLAISCL 291 (291)
Q Consensus 246 ~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~-----~~t~~eai~l~~~~l 291 (291)
+|++.+++++++|+|++.++++||+.|++.. +||+|||++++++||
T Consensus 151 ~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~~~~~~~~ms~eea~~l~~~al 201 (243)
T 1ryp_A 151 AGYYVGYKATATGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHM 201 (243)
T ss_dssp TSCEEEBSEEEESTTHHHHHHHHHHHHHHHCSSSCCCSSHHHHHHHHHHHH
T ss_pred CCCEEEEEEEEECCCcHHHHHHHHHHhhhcccccccCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999998732 799999999999985
No 5
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=100.00 E-value=1.2e-50 Score=349.57 Aligned_cols=193 Identities=34% Similarity=0.607 Sum_probs=172.0
Q ss_pred CCCccceeeeeCCCCcchhhhHHHHHHhcCCceEEEEecCCeEEEEEeccCCCCccCCCCcceeEeecCcEEEEEecccc
Q psy8777 6 SAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVMTGMQA 85 (291)
Q Consensus 6 ~~~yd~~~~~fsp~g~~~q~eya~~av~~g~~t~vgi~~~~~vv~a~~~~~~~~l~~~~~~~ki~~i~~~~~~~~~G~~~ 85 (291)
+++||+++|+|||||||||||||+||+++|+ |+|||+++||||||+|+|.++++..+++.+||++|++|++|++||+.+
T Consensus 2 ~~~yd~~~t~fsp~Grl~QvEya~~av~~Gt-t~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~a 80 (233)
T 1iru_B 2 ERGYSFSLTTFSPSGKLVQIEYALAAVAGGA-PSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGP 80 (233)
T ss_dssp CCCCCSBSCCCCTTSCCHHHHHHHHHHHTSC-CEEEEECSSCEEEEEECCCCCSSBCSTTCCSSEESSSSEEEEEEECHH
T ss_pred CCCccCCceeECCCCeEehhHhHHHHHHcCC-cEEEEEeCCEEEEEEEecCCccccccccCCeEEEECCCEEEEEEEccH
Confidence 5799999999999999999999999999995 999999999999999999987777776667777777777777777777
Q ss_pred chhhhhhhhcccccccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcE
Q psy8777 86 DSRYQVQRARAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTV 165 (291)
Q Consensus 86 D~~~~~~~~~~~yd~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~ 165 (291)
|+|.+++.+
T Consensus 81 D~~~l~~~~----------------------------------------------------------------------- 89 (233)
T 1iru_B 81 DYRVLVHRA----------------------------------------------------------------------- 89 (233)
T ss_dssp HHHHHHHHH-----------------------------------------------------------------------
T ss_pred HHHHHHHHH-----------------------------------------------------------------------
Confidence 776665544
Q ss_pred EEEeecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECC
Q psy8777 166 GCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDP 245 (291)
Q Consensus 166 ~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~ 245 (291)
+.+++.|+++++.+++++.+++.+++++|.|+++.++||++++++|+|||+ +||+||.+||
T Consensus 90 ------------------~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rP~~v~~lvaG~D~-~gp~Ly~id~ 150 (233)
T 1iru_B 90 ------------------RKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNE-GRPYLFQSDP 150 (233)
T ss_dssp ------------------HHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECS-SSEEEEEECT
T ss_pred ------------------HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCCCCcEEEEEEEEEeC-CCCeEEEECC
Confidence 334455666778899999999999999999999888999999999999995 7899999999
Q ss_pred CCceEeeeEEEecCCchHHHHHHHHhccCCCCCCHHHHHHHHHhhC
Q psy8777 246 AGYYCSFKAVSVGVKTTEANSYLEKKFKKKTNYTGDETIQLAISCL 291 (291)
Q Consensus 246 ~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~t~~eai~l~~~~l 291 (291)
+|++.+++++++|+|+++++++||+.|++ +||+|||++++++||
T Consensus 151 ~G~~~~~~~~aiG~gs~~a~~~Le~~~~~--~ms~eea~~la~~al 194 (233)
T 1iru_B 151 SGAYFAWKATAMGKNYVNGKTFLEKRYNE--DLELEDAIHTAILTL 194 (233)
T ss_dssp TSCEEEBSEEEESTTHHHHHHHHHHHCCT--TCCHHHHHHHHHHHH
T ss_pred CCCEEEeeEEEECCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999 999999999999985
No 6
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=100.00 E-value=7.7e-51 Score=354.87 Aligned_cols=196 Identities=31% Similarity=0.564 Sum_probs=175.2
Q ss_pred CCCCCccceeeeeCCCCcchhhhHHHHHHhcCCceEEEEecCCeEEEEEeccCCCCccCCCCcceeEeecCcEEEEEecc
Q psy8777 4 GSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVMTGM 83 (291)
Q Consensus 4 ~~~~~yd~~~~~fsp~g~~~q~eya~~av~~g~~t~vgi~~~~~vv~a~~~~~~~~l~~~~~~~ki~~i~~~~~~~~~G~ 83 (291)
+++++||+++|+|||||||||||||+|||++| +|+|||+++||||||+|+|.+.++..+++.+|||+|++||+|++||+
T Consensus 2 ~~~~~yd~~~t~fsp~Grl~QvEyA~~av~~G-tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~KI~~i~~~i~~~~aG~ 80 (254)
T 1iru_G 2 SIGTGYDLSASTFSPDGRVFQVEYAMKAVENS-STAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGL 80 (254)
T ss_dssp CCCSSTTSCTTCCCTTSCCHHHHHHHHHHHTS-CCEEEEECSSBEEEEEEEECSCTTBCTTTTCCEEEEETTEEEEEEEC
T ss_pred CcccccCCCCccCCcCCccHHHHhHHHHHhcC-CCEEEEEECCEEEEEEecccCCCCcCcCcCCcEEEECCCEEEEEecC
Confidence 45679999999999999999999999999998 59999999999999999999988777766778888877777777777
Q ss_pred ccchhhhhhhhcccccccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecC
Q psy8777 84 QADSRYQVQRARAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTP 163 (291)
Q Consensus 84 ~~D~~~~~~~~~~~yd~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~ 163 (291)
.+|+|.+++.++
T Consensus 81 ~aD~~~l~~~~~-------------------------------------------------------------------- 92 (254)
T 1iru_G 81 LADARSLADIAR-------------------------------------------------------------------- 92 (254)
T ss_dssp HHHHHHHHHHHH--------------------------------------------------------------------
T ss_pred hHHHHHHHHHHH--------------------------------------------------------------------
Confidence 777776666552
Q ss_pred cEEEEeecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEE
Q psy8777 164 TVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKT 243 (291)
Q Consensus 164 ~~~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~ 243 (291)
.+++.|++.++++++++.+++.+++++|.|++++++|||+++++|+|||+++||+||.+
T Consensus 93 ---------------------~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~i 151 (254)
T 1iru_G 93 ---------------------EEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMI 151 (254)
T ss_dssp ---------------------HHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETTTEEEEEEE
T ss_pred ---------------------HHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccccccccceEEEEEEEEeCCCCcEEEEE
Confidence 33444667788899999999999999999998888999999999999995578999999
Q ss_pred CCCCceEeeeEEEecCCchHHHHHHHHhccCCCCCCHHHHHHHHHhhC
Q psy8777 244 DPAGYYCSFKAVSVGVKTTEANSYLEKKFKKKTNYTGDETIQLAISCL 291 (291)
Q Consensus 244 d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~t~~eai~l~~~~l 291 (291)
||+|++.+++++++|+|+++++++||+.|++ +||++||++++++||
T Consensus 152 dp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~--~ms~eea~~la~~al 197 (254)
T 1iru_G 152 DPSGVSYGYWGCAIGKARQAAKTEIEKLQMK--EMTCRDIVKEVAKII 197 (254)
T ss_dssp CTTCCEEEBSEEEESTTHHHHHHHHTTSCGG--GCCHHHHHHHHHHHH
T ss_pred cCCCCEEeeeeEEecCccHHHHHHHHHhccC--CCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 999999999999875
No 7
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=100.00 E-value=1.5e-50 Score=348.99 Aligned_cols=193 Identities=35% Similarity=0.591 Sum_probs=166.2
Q ss_pred CCCccceeeeeCCCCcchhhhHHHHHHhcCCceEEEEecCCeEEEEEeccCCCCccCCCCcceeEeecCcEEEEEecccc
Q psy8777 6 SAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVMTGMQA 85 (291)
Q Consensus 6 ~~~yd~~~~~fsp~g~~~q~eya~~av~~g~~t~vgi~~~~~vv~a~~~~~~~~l~~~~~~~ki~~i~~~~~~~~~G~~~ 85 (291)
+++||+++|+|||||||||||||+||+++| +|+|||+++||||||+|+|.+++++.+++.+||++|++|++|++||+.+
T Consensus 5 ~~~yd~~~t~fsp~Grl~QvEya~~av~~G-tt~vgi~~~dgVvlaaD~r~~~~~~~~~~~~Ki~~i~~~i~~~~aG~~a 83 (233)
T 1yar_A 5 QMAYSRAITVFSPDGRLFQVEYAREAVKKG-STALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAAVTSGLVA 83 (233)
T ss_dssp --------CCCCTTSCCHHHHHHHHHHTTS-CCEEEEEETTEEEEEECCCCCCTTBCSTTCCSEEEEETTEEEEEEEBHH
T ss_pred cccCCCCCceECcCCeeHHHHhHHHHHhcC-CcEEEEEECCEEEEEEeccCCcccccccccCeEEEecCCEEEEEeeCHH
Confidence 479999999999999999999999999998 5999999999999999999988877766677777777777777777777
Q ss_pred chhhhhhhhcccccccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcE
Q psy8777 86 DSRYQVQRARAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTV 165 (291)
Q Consensus 86 D~~~~~~~~~~~yd~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~ 165 (291)
|+|.+++.+
T Consensus 84 D~~~l~~~~----------------------------------------------------------------------- 92 (233)
T 1yar_A 84 DARVLVDFA----------------------------------------------------------------------- 92 (233)
T ss_dssp HHHHHHHHH-----------------------------------------------------------------------
T ss_pred HHHHHHHHH-----------------------------------------------------------------------
Confidence 777666554
Q ss_pred EEEeecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECC
Q psy8777 166 GCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDP 245 (291)
Q Consensus 166 ~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~ 245 (291)
+.+++.|++.++++++++.+++.++++++.|+++.+.||++++++|+|||+ +||+||.+||
T Consensus 93 ------------------~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~-~gp~Ly~id~ 153 (233)
T 1yar_A 93 ------------------RISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQ-IGPRLFDCDP 153 (233)
T ss_dssp ------------------HHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECS-SCEEEEEECT
T ss_pred ------------------HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCcCcceEEEEEEEEeC-CCCEEEEECC
Confidence 233445667788899999999999999999999888899999999999997 7899999999
Q ss_pred CCceEeeeEEEecCCchHHHHHHHHhccCCCCCCHHHHHHHHHhhC
Q psy8777 246 AGYYCSFKAVSVGVKTTEANSYLEKKFKKKTNYTGDETIQLAISCL 291 (291)
Q Consensus 246 ~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~t~~eai~l~~~~l 291 (291)
+|++.+++++++|+|+.+++++||+.|++ +||+|||++++++||
T Consensus 154 ~G~~~~~~~~aiG~gs~~a~~~Le~~~~~--~~s~eea~~la~~al 197 (233)
T 1yar_A 154 AGTINEYKATAIGSGKDAVVSFLEREYKE--NLPEKEAVTLGIKAL 197 (233)
T ss_dssp TCCEEEBSEEEESTTHHHHHHHHHHHCCT--TCCHHHHHHHHHHHH
T ss_pred CCCEEeeeEEEEcCCcHHHHHHHHHHhcc--CCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999 999999999999985
No 8
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=100.00 E-value=2.1e-50 Score=350.41 Aligned_cols=192 Identities=36% Similarity=0.681 Sum_probs=170.4
Q ss_pred CccceeeeeCCCCcchhhhHHHHHHhcCCceEEEEecCCeEEEEEeccCCCCccC-CCCcceeEeecCcEEEEEeccccc
Q psy8777 8 GFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVD-PKTVTNLYSLTPTVGCVMTGMQAD 86 (291)
Q Consensus 8 ~yd~~~~~fsp~g~~~q~eya~~av~~g~~t~vgi~~~~~vv~a~~~~~~~~l~~-~~~~~ki~~i~~~~~~~~~G~~~D 86 (291)
+||+++|+|||||||||||||+|||++|+ |+|||+++||||||+|+|.++++.. +++.+|||+|++|++|++||+.+|
T Consensus 4 ~yd~~~t~fsp~Grl~QvEyA~~av~~Gt-t~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD 82 (244)
T 1ryp_C 4 RYDSRTTIFSPEGRLYQVEYALESISHAG-TAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTAD 82 (244)
T ss_dssp GGCCCTTCBCTTSCBHHHHHHHHHHTTSC-CEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHHH
T ss_pred ccCCCCceECcCCeeHHHHhHHHHHhcCC-cEEEEEeCCEEEEEEeeccCCcCccCCCCCCcEEEECCCEEEEEEEcHHH
Confidence 89999999999999999999999999995 9999999999999999999888766 555677777777776666666666
Q ss_pred hhhhhhhhcccccccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEE
Q psy8777 87 SRYQVQRARAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVG 166 (291)
Q Consensus 87 ~~~~~~~~~~~yd~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~ 166 (291)
+|.+++.+
T Consensus 83 ~~~l~~~~------------------------------------------------------------------------ 90 (244)
T 1ryp_C 83 AEILINTA------------------------------------------------------------------------ 90 (244)
T ss_dssp HHHHHHHH------------------------------------------------------------------------
T ss_pred HHHHHHHH------------------------------------------------------------------------
Confidence 66665544
Q ss_pred EEeecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECCC
Q psy8777 167 CVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPA 246 (291)
Q Consensus 167 ~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~~ 246 (291)
+.+++.|++.++++++++.+++.+++++|.|+++.+.||++++++|+|||+++||+||.+||+
T Consensus 91 -----------------~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~ 153 (244)
T 1ryp_C 91 -----------------RIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPS 153 (244)
T ss_dssp -----------------HHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETTTEEEEEEECTT
T ss_pred -----------------HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccceEEEEEEEEEcCCCCCEEEEECCC
Confidence 334446677788899999999999999999999888999999999999995478999999999
Q ss_pred CceEeeeEEEecCCchHHHHHHHHhccCCCCCCHHHHHHHHHhhC
Q psy8777 247 GYYCSFKAVSVGVKTTEANSYLEKKFKKKTNYTGDETIQLAISCL 291 (291)
Q Consensus 247 G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~t~~eai~l~~~~l 291 (291)
|++.+++++++|+|+.+++++||+.|++ +||+|||++++++||
T Consensus 154 G~~~~~~~~aiGsgs~~a~~~Le~~~~~--~ms~eea~~la~~al 196 (244)
T 1ryp_C 154 GNYTGWKAISVGANTSAAQTLLQMDYKD--DMKVDDAIELALKTL 196 (244)
T ss_dssp CCEEEBSEEEESTTHHHHHHHHHHHCCT--TCCHHHHHHHHHHHH
T ss_pred ccEEeeeEEEECCCcHHHHHHHHHhhhc--CCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999 999999999999885
No 9
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=100.00 E-value=2.5e-50 Score=350.58 Aligned_cols=191 Identities=37% Similarity=0.637 Sum_probs=168.4
Q ss_pred ccceeeeeCCCCcchhhhHHHHHHhcCCceEEEEecCCeEEEEEeccCCCCccCCCCcceeEeecCcEEEEEeccccchh
Q psy8777 9 FDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVMTGMQADSR 88 (291)
Q Consensus 9 yd~~~~~fsp~g~~~q~eya~~av~~g~~t~vgi~~~~~vv~a~~~~~~~~l~~~~~~~ki~~i~~~~~~~~~G~~~D~~ 88 (291)
||+++|+|||||||||||||+|||++|+ |+|||+++||||||+|+|.+++++.+++.+|||+|++|++|++||+.+|+|
T Consensus 3 yd~~~t~fsp~Grl~QvEYA~~av~~Gt-t~vgi~~~dgVvlaaD~r~~~~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~ 81 (248)
T 1iru_D 3 YDRAITVFSPDGHLFQVEYAQEAVKKGS-TAVGVRGRDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADAR 81 (248)
T ss_dssp CCCCCSCCCTTSCCHHHHHHHHHHHTSC-CEEEECCSSEEEEEECCCCCCSSSCGGGGCSEEESSSSCEEEEEECHHHHH
T ss_pred ccCCCceECCCCcchHHHHHHHHHHcCC-CEEEEEeCCEEEEEEeecccccCccCCCCCcEEEEcCCEEEEEeecHHHHH
Confidence 9999999999999999999999999995 999999999999999999988776655556666666666666666666666
Q ss_pred hhhhhhcccccccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEE
Q psy8777 89 YQVQRARAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCV 168 (291)
Q Consensus 89 ~~~~~~~~~yd~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~ 168 (291)
.+++.
T Consensus 82 ~l~~~--------------------------------------------------------------------------- 86 (248)
T 1iru_D 82 IVINR--------------------------------------------------------------------------- 86 (248)
T ss_dssp HHHHH---------------------------------------------------------------------------
T ss_pred HHHHH---------------------------------------------------------------------------
Confidence 55444
Q ss_pred eecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECCCCc
Q psy8777 169 MTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGY 248 (291)
Q Consensus 169 ~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~~G~ 248 (291)
++.+++.|++.++++++++.+++.+++++|.|+++.+.|||+++++|+|||+++||+||.+||+|+
T Consensus 87 --------------~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~ 152 (248)
T 1iru_D 87 --------------ARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGT 152 (248)
T ss_dssp --------------HHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSSSCEEEEEECTTSC
T ss_pred --------------HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCcccccEEEEEEEEeCCCCcEEEEEcCCCc
Confidence 444555677788889999999999999999999988889999999999999557899999999999
Q ss_pred eEeeeEEEecCCchHHHHHHHHhccCCCCC--CHHHHHHHHHhhC
Q psy8777 249 YCSFKAVSVGVKTTEANSYLEKKFKKKTNY--TGDETIQLAISCL 291 (291)
Q Consensus 249 ~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~--t~~eai~l~~~~l 291 (291)
+.+++++++|+|+.+++++||+.|++ +| |+|||++++++||
T Consensus 153 ~~~~~~~aiG~gs~~a~~~Le~~~~~--~m~~s~eea~~la~~al 195 (248)
T 1iru_D 153 YHAWKANAIGRGAKSVREFLEKNYTD--EAIETDDLTIKLVIKAL 195 (248)
T ss_dssp EEEBSEEEESTTHHHHHHHHTTTCCS--STTCSHHHHHHHHHHHH
T ss_pred EEEeeEEEECCCcHHHHHHHHHhhcc--cccCCHHHHHHHHHHHH
Confidence 99999999999999999999999999 99 9999999999985
No 10
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=100.00 E-value=4.3e-50 Score=348.74 Aligned_cols=196 Identities=31% Similarity=0.622 Sum_probs=168.7
Q ss_pred CCCCCCCCccceeeeeCCCCcchhhhHHHHHHhcCCceEEEEecCCeEEEEEeccCCCCccCCCCcceeEeecCcEEEEE
Q psy8777 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVM 80 (291)
Q Consensus 1 ~~~~~~~~yd~~~~~fsp~g~~~q~eya~~av~~g~~t~vgi~~~~~vv~a~~~~~~~~l~~~~~~~ki~~i~~~~~~~~ 80 (291)
|.|. +++||+++|+|||||||||||||++||++| +|+|||+++||||||+|+|.++++..+++.+||++|++|++|++
T Consensus 1 ~~~~-~~~yd~~~t~fsp~Grl~QvEya~~av~~G-tt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~KI~~i~~~i~~~~ 78 (246)
T 1j2p_A 1 MHLP-QMGYDRAITVFSPDGRLFQVEYAREAVKRG-ATAIGIKCKEGVILIADKRVGSKLLEKDTIEKIYKIDEHICAAT 78 (246)
T ss_dssp ---C-CTTSSSCTTCCCTTSCCHHHHHHHHHHHTS-CCEEEEEETTEEEEEEECCCSCTTBCGGGCCSEEECSSSEEEEE
T ss_pred CCcc-ccCcCCCCceECCCCeehHHHhHHHHHHcC-CcEEEEEECCEEEEEEeccCCccccccCccCcEEEECCCEEEEE
Confidence 4443 369999999999999999999999999998 59999999999999999999887765555566666666666666
Q ss_pred eccccchhhhhhhhcccccccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEE
Q psy8777 81 TGMQADSRYQVQRARAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYS 160 (291)
Q Consensus 81 ~G~~~D~~~~~~~~~~~yd~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~ 160 (291)
||+.+|+|.+++
T Consensus 79 aG~~aD~~~l~~-------------------------------------------------------------------- 90 (246)
T 1j2p_A 79 SGLVADARVLID-------------------------------------------------------------------- 90 (246)
T ss_dssp EECHHHHHHHHH--------------------------------------------------------------------
T ss_pred eEccHHHHHHHH--------------------------------------------------------------------
Confidence 666666655544
Q ss_pred ecCcEEEEeecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEE
Q psy8777 161 LTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLI 240 (291)
Q Consensus 161 i~~~~~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~L 240 (291)
+++.+++.|++.++++++++.+++.+++++|.|+++.+.||++++++|+||| +||+|
T Consensus 91 ---------------------~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D--~gp~L 147 (246)
T 1j2p_A 91 ---------------------RARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVN--EVPKL 147 (246)
T ss_dssp ---------------------HHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEES--SSEEE
T ss_pred ---------------------HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCcccccEEEEEEEEC--CCCEE
Confidence 4444555577778889999999999999999999988889999999999998 68999
Q ss_pred EEECCCCceEeeeEEEecCCchHHHHHHHHhccCCCCCCHHHHHHHHHhhC
Q psy8777 241 YKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKKKTNYTGDETIQLAISCL 291 (291)
Q Consensus 241 y~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~t~~eai~l~~~~l 291 (291)
|.+||+|++.+++++|+|+|+.+++++||+.|++ +||+|||++++++||
T Consensus 148 y~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~--~ms~eea~~la~~al 196 (246)
T 1j2p_A 148 YETDPSGALLEYKATAIGMGRMAVTEFFEKEYRD--DLSFDDAMVLGLVAM 196 (246)
T ss_dssp EEECTTCCEEEBSEEEESTTHHHHHHHHHHHCCT--TCCHHHHHHHHHHHH
T ss_pred EEECCCceEEeeeEEEECCCcHHHHHHHHHHhcc--CCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 999999999999885
No 11
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=100.00 E-value=6.9e-50 Score=346.88 Aligned_cols=193 Identities=33% Similarity=0.551 Sum_probs=171.6
Q ss_pred CCCccceeeeeCCCCcchhhhHHHHHHhcCCceEEEEecCCeEEEEEeccCCCCccCCCCcceeEeecCcEEEEEecccc
Q psy8777 6 SAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVMTGMQA 85 (291)
Q Consensus 6 ~~~yd~~~~~fsp~g~~~q~eya~~av~~g~~t~vgi~~~~~vv~a~~~~~~~~l~~~~~~~ki~~i~~~~~~~~~G~~~ 85 (291)
+++||+++|+|||||||||||||+|||++|+ |+|||+++||||||+|+|.++++..+++.+||++|++|++|++||+.+
T Consensus 1 ~~~yd~~~t~fsp~Grl~QvEya~~av~~Gt-t~vgi~~~dgVvlaaD~r~~~g~~~~~~~~KI~~i~~~i~~~~aG~~a 79 (244)
T 1ryp_G 1 GTGYDLSNSVFSPDGRNFQVEYAVKAVENGT-TSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSGLIP 79 (244)
T ss_dssp CCCTTSSTTCCCTTSCCHHHHHHHHHHHTSC-CEEEEEETTEEEEEEEEECCCTTBCTTTSCCCEEETTTEEEEEEECHH
T ss_pred CCCccCCcccCCcCCchHHHHhHHHHHHCCC-CEEEEEECCEEEEEEecccCCCCccccccCceEEecCCEEEEEcccHH
Confidence 3689999999999999999999999999995 999999999999999999998877666567777777777777777777
Q ss_pred chhhhhhhhcccccccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcE
Q psy8777 86 DSRYQVQRARAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTV 165 (291)
Q Consensus 86 D~~~~~~~~~~~yd~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~ 165 (291)
|+|.+++.+
T Consensus 80 D~~~l~~~~----------------------------------------------------------------------- 88 (244)
T 1ryp_G 80 DGRHLVNRG----------------------------------------------------------------------- 88 (244)
T ss_dssp HHHHHHHHH-----------------------------------------------------------------------
T ss_pred HHHHHHHHH-----------------------------------------------------------------------
Confidence 776665544
Q ss_pred EEEeecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECC
Q psy8777 166 GCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDP 245 (291)
Q Consensus 166 ~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~ 245 (291)
+.+++.|++.++++++++.+++.+++++|.|+++++.||++++++|+|||+ +||+||.+||
T Consensus 89 ------------------~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~-~gp~Ly~idp 149 (244)
T 1ryp_G 89 ------------------REEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDK-NGAHLYMLEP 149 (244)
T ss_dssp ------------------HHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEET-TEEEEEEECT
T ss_pred ------------------HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccCceEEEEEEEEeC-CcCEEEEECC
Confidence 334455667788899999999999999999999888899999999999996 7899999999
Q ss_pred CCceEeeeEEEecCCchHHHHHHHHh---ccCCCCCCHHHHHHHHHhhC
Q psy8777 246 AGYYCSFKAVSVGVKTTEANSYLEKK---FKKKTNYTGDETIQLAISCL 291 (291)
Q Consensus 246 ~G~~~~~~~~a~G~gs~~~~~~Le~~---~~~~~~~t~~eai~l~~~~l 291 (291)
+|++.+++++++|+|+++++++||+. |++ +||+|||++++++||
T Consensus 150 ~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~--~ms~eea~~la~~al 196 (244)
T 1ryp_G 150 SGSYWGYKGAATGKGRQSAKAELEKLVDHHPE--GLSAREAVKQAAKII 196 (244)
T ss_dssp TSCEEEBSEEEESTTHHHHHHHHHHHHHHCTT--CCCHHHHHHHHHHHH
T ss_pred CCCEEEeeEEEECCChHHHHHHHHHhHhhcCC--CCCHHHHHHHHHHHH
Confidence 99999999999999999999999997 999 999999999999985
No 12
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=100.00 E-value=6.2e-50 Score=346.84 Aligned_cols=192 Identities=32% Similarity=0.627 Sum_probs=168.5
Q ss_pred CccceeeeeCCCCcchhhhHHHHHHhcCCceEEEEecCCeEEEEEeccCCCCccCCC-CcceeEeecCcEEEEEeccccc
Q psy8777 8 GFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPK-TVTNLYSLTPTVGCVMTGMQAD 86 (291)
Q Consensus 8 ~yd~~~~~fsp~g~~~q~eya~~av~~g~~t~vgi~~~~~vv~a~~~~~~~~l~~~~-~~~ki~~i~~~~~~~~~G~~~D 86 (291)
+||+++|+|||||||||||||+|||++|+ |+|||+++||||||+|+|.+.++...+ +.+|||+|++|++|++||+.+|
T Consensus 1 ~yd~~~t~fsp~Grl~QvEya~~av~~Gt-t~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD 79 (241)
T 1ryp_D 1 GYDRALSIFSPDGHIFQVEYALEAVKRGT-CAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNAD 79 (241)
T ss_dssp CCCCCCSCCBTTTBCHHHHHHHHHHTTSC-CEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHH
T ss_pred CCCCCceeECCCCcchHHHHHHHHHHcCC-CEEEEEeCCEEEEEEeeccCccCccccCCcCcEEEecCCEEEEEeecHHH
Confidence 69999999999999999999999999995 999999999999999999988776654 5566666666666666666666
Q ss_pred hhhhhhhhcccccccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEE
Q psy8777 87 SRYQVQRARAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVG 166 (291)
Q Consensus 87 ~~~~~~~~~~~yd~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~ 166 (291)
+|.+++.+
T Consensus 80 ~~~l~~~~------------------------------------------------------------------------ 87 (241)
T 1ryp_D 80 SRILIEKA------------------------------------------------------------------------ 87 (241)
T ss_dssp HHHHHHHH------------------------------------------------------------------------
T ss_pred HHHHHHHH------------------------------------------------------------------------
Confidence 66555444
Q ss_pred EEeecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEEEeCC-CCcEEEEECC
Q psy8777 167 CVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDEN-EGPLIYKTDP 245 (291)
Q Consensus 167 ~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~-~gp~Ly~~d~ 245 (291)
+.+++.|++.++++++++.+++.++++++.|+++.+.|||+++++|+|||++ +||+||.+||
T Consensus 88 -----------------~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~~gp~Ly~idp 150 (241)
T 1ryp_D 88 -----------------RVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEP 150 (241)
T ss_dssp -----------------HHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCEEEEECT
T ss_pred -----------------HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHccCCCCCCcceeeEEEEEcCCCCCeeEEEECC
Confidence 4455556777888999999999999999999888788999999999999975 6899999999
Q ss_pred CCceEeeeEEEecCCchHHHHHHHHhc---cCCCCCCHHHHHHHHHhhC
Q psy8777 246 AGYYCSFKAVSVGVKTTEANSYLEKKF---KKKTNYTGDETIQLAISCL 291 (291)
Q Consensus 246 ~G~~~~~~~~a~G~gs~~~~~~Le~~~---~~~~~~t~~eai~l~~~~l 291 (291)
+|++.+++++++|+|+.+++++||+.| ++ +||+|||++++++||
T Consensus 151 ~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~--~ms~eea~~l~~~al 197 (241)
T 1ryp_D 151 SGIYSSWSAQTIGRNSKTVREFLEKNYDRKEP--PATVEECVKLTVRSL 197 (241)
T ss_dssp TSCEEEBSEEEESTTHHHHHHHHHTTCCTTSC--CCSHHHHHHHHHHHH
T ss_pred CCCEEEeeeEEECCCcHHHHHHHHHhhhcccC--CCCHHHHHHHHHHHH
Confidence 999999999999999999999999999 88 999999999999985
No 13
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=100.00 E-value=5.4e-50 Score=347.19 Aligned_cols=193 Identities=27% Similarity=0.591 Sum_probs=168.9
Q ss_pred CCCccceeeeeCCCCcchhhhHHHHHHhcCCceEEEEecCCeEEEEEeccCCCCccCCCCcceeEeecCcEEEEEecccc
Q psy8777 6 SAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVMTGMQA 85 (291)
Q Consensus 6 ~~~yd~~~~~fsp~g~~~q~eya~~av~~g~~t~vgi~~~~~vv~a~~~~~~~~l~~~~~~~ki~~i~~~~~~~~~G~~~ 85 (291)
+++||+++|+|||||||||||||+||+++| +|+|||+++||||||+|+|.+.++..+++.+||++|++|++|++||+.+
T Consensus 5 ~~~yd~~~t~fsp~Grl~QvEya~~av~~G-tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~Ki~~i~~~i~~~~aG~~a 83 (241)
T 1iru_E 5 RSEYDRGVNTFSPEGRLFQVEYDIEAIKLG-STAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIA 83 (241)
T ss_dssp ---CCCCTTCBCTTSCBHHHHHHHHHHTTS-CCEEEEEETTEEEEEEECCCCCTTBCTTSCCSEEEEETTEEEEEEECHH
T ss_pred cCCCCCCCceECCCCccHHHHHHHHHHHcC-CcEEEEEcCCEEEEEEecccCCcCcCccccceEEEEcCCEEEEEeeChH
Confidence 479999999999999999999999999999 5999999999999999999988876666667777777777777777777
Q ss_pred chhhhhhhhcccccccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcE
Q psy8777 86 DSRYQVQRARAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTV 165 (291)
Q Consensus 86 D~~~~~~~~~~~yd~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~ 165 (291)
|+|.+++.+
T Consensus 84 D~~~l~~~~----------------------------------------------------------------------- 92 (241)
T 1iru_E 84 DAKTLIDKA----------------------------------------------------------------------- 92 (241)
T ss_dssp HHHHHHHHH-----------------------------------------------------------------------
T ss_pred HHHHHHHHH-----------------------------------------------------------------------
Confidence 777665544
Q ss_pred EEEeecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCc-----ceeeeeeeeEEEEeCCCCcEE
Q psy8777 166 GCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNAE-----MRPLGCSMILISYDENEGPLI 240 (291)
Q Consensus 166 ~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~-----~~p~~~~~li~G~d~~~gp~L 240 (291)
+.+++.|++.++++++++.+++.+++++|.|+++.+ .||++++++|+|||+ +||+|
T Consensus 93 ------------------~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~lvaG~D~-~gp~L 153 (241)
T 1iru_E 93 ------------------RVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDE-KGPQL 153 (241)
T ss_dssp ------------------HHHHHHHHHHHSSCCCHHHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEET-TEEEE
T ss_pred ------------------HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccccccccccccceEEEEEEEEeC-CCCEE
Confidence 334444666788899999999999999999988766 799999999999994 78999
Q ss_pred EEECCCCceEeeeEEEecCCchHHHHHHHHhccCCCCCCHHHHHHHHHhhC
Q psy8777 241 YKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKKKTNYTGDETIQLAISCL 291 (291)
Q Consensus 241 y~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~t~~eai~l~~~~l 291 (291)
|.+||+|++.+++++|+|+|+.+++++||+.|++ +||+|||++++++||
T Consensus 154 y~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~--~ms~eea~~la~~al 202 (241)
T 1iru_E 154 FHMDPSGTFVQCDARAIGSASEGAQSSLQELYHK--SMTLKEAIKSSLIIL 202 (241)
T ss_dssp EEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCT--TCCHHHHHHHHHHHH
T ss_pred EEECCCCcEEecceEEECCCcHHHHHHHHHHhcc--CCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 999999999999985
No 14
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=100.00 E-value=2.9e-49 Score=344.29 Aligned_cols=193 Identities=35% Similarity=0.581 Sum_probs=171.5
Q ss_pred CCccceeeeeCCCCcchhhhHHHHHHhcCCceEEEEecCCeEEEEEeccCCCCccCCCCcceeEeecCcEEEEEeccccc
Q psy8777 7 AGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVMTGMQAD 86 (291)
Q Consensus 7 ~~yd~~~~~fsp~g~~~q~eya~~av~~g~~t~vgi~~~~~vv~a~~~~~~~~l~~~~~~~ki~~i~~~~~~~~~G~~~D 86 (291)
.+||+++|+|||||||||||||+|||++| +|+|||+++||||||+|+|.+++++.+++.+||++|++|++|++||+.+|
T Consensus 3 ~~yd~~~t~fsp~Grl~QvEyA~~av~~G-tt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD 81 (250)
T 1ryp_B 3 DRYSFSLTTFSPSGKLGQIDYALTAVKQG-VTSLGIKATNGVVIATEKKSSSPLAMSETLSKVSLLTPDIGAVYSGMGPD 81 (250)
T ss_dssp CCCCSBSSCBCTTSCBHHHHHHHHHHHTS-CCEEEEEETTEEEEEEECCCSCSSBCGGGCCSSEEEETTEEEEEEECHHH
T ss_pred CcccCCceeECCCCccHHHHhHHHHHHcC-CcEEEEEECCEEEEEEeccCCCccccCcccCceEEECCCEEEEeeeCHHH
Confidence 48999999999999999999999999999 59999999999999999999877777766778888777777777777777
Q ss_pred hhhhhhhhcccccccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEE
Q psy8777 87 SRYQVQRARAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVG 166 (291)
Q Consensus 87 ~~~~~~~~~~~yd~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~ 166 (291)
+|.++++++
T Consensus 82 ~~~l~~~~~----------------------------------------------------------------------- 90 (250)
T 1ryp_B 82 YRVLVDKSR----------------------------------------------------------------------- 90 (250)
T ss_dssp HHHHHHHHH-----------------------------------------------------------------------
T ss_pred HHHHHHHHH-----------------------------------------------------------------------
Confidence 776665542
Q ss_pred EEeecccccHHHHHHHHHHHHHH-hHhhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECC
Q psy8777 167 CVMTGMQADSRYQVQRARYEAAS-FKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDP 245 (291)
Q Consensus 167 ~~~sG~~~D~~~~~~~~~~e~~~-~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~ 245 (291)
.+++. |++.++.+++++.+++.++++++.++++.++||++++++|+|||+++||+||.+||
T Consensus 91 ------------------~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp 152 (250)
T 1ryp_B 91 ------------------KVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDP 152 (250)
T ss_dssp ------------------HHHHHTTHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETTTEEEEEEECT
T ss_pred ------------------HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcccceEEEEEEEEcCCCCcEEEEECC
Confidence 23333 55567778999999999999999999888889999999999999766899999999
Q ss_pred CCceEeeeEEEecCCchHHHHHHHHhccCCCCCCHHHHHHHHHhhC
Q psy8777 246 AGYYCSFKAVSVGVKTTEANSYLEKKFKKKTNYTGDETIQLAISCL 291 (291)
Q Consensus 246 ~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~t~~eai~l~~~~l 291 (291)
+|++.+++++++|+|+++++++||+.|++ +||+|||++++++||
T Consensus 153 ~G~~~~~~~~aiGsgs~~a~~~Le~~~~~--~ms~eea~~la~~al 196 (250)
T 1ryp_B 153 SGSYFPWKATAIGKGSVAAKTFLEKRWND--ELELEDAIHIALLTL 196 (250)
T ss_dssp TSCEEEBSEEEESTTHHHHHHHHHHHCCT--TCCHHHHHHHHHHHH
T ss_pred CCCEEeeceeEecCccHHHHHHHHHHhcc--CCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999 999999999999985
No 15
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=100.00 E-value=4.6e-48 Score=338.60 Aligned_cols=194 Identities=34% Similarity=0.592 Sum_probs=168.5
Q ss_pred CCccceeeeeCCCCcchhhhHHHHHHhcCCceEEEEecCCeEEEEEeccCCCCccCCCC-cceeEeecCcEEEEEecccc
Q psy8777 7 AGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKT-VTNLYSLTPTVGCVMTGMQA 85 (291)
Q Consensus 7 ~~yd~~~~~fsp~g~~~q~eya~~av~~g~~t~vgi~~~~~vv~a~~~~~~~~l~~~~~-~~ki~~i~~~~~~~~~G~~~ 85 (291)
++||+++|+|||||||||||||+||+++|+ |+|||+++||||||+|+|.++++...++ .+|||+|++|++|++||+.+
T Consensus 3 ~~yd~~~t~fsp~Grl~QvEYA~~av~~Gt-t~vgi~~~dgVVlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~a 81 (261)
T 1iru_C 3 RRYDSRTTIFSPEGRLYQVEYAMEAIGHAG-TCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITS 81 (261)
T ss_dssp TTTCCCTTCCCTTSCCHHHHHHHHHHTTSC-CEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEEEEECHH
T ss_pred CccCCCCccCCCCCeehHHHhHHHHHhcCC-cEEEEEeCCEEEEEEecccCCcccccCCCCccEEEecCCEEEEEeEcHH
Confidence 489999999999999999999999999995 9999999999999999999887765543 46666666666666666666
Q ss_pred chhhhhhhhcccccccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcE
Q psy8777 86 DSRYQVQRARAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTV 165 (291)
Q Consensus 86 D~~~~~~~~~~~yd~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~ 165 (291)
|+|.+++
T Consensus 82 D~~~l~~------------------------------------------------------------------------- 88 (261)
T 1iru_C 82 DANVLTN------------------------------------------------------------------------- 88 (261)
T ss_dssp HHHHHHH-------------------------------------------------------------------------
T ss_pred HHHHHHH-------------------------------------------------------------------------
Confidence 6555544
Q ss_pred EEEeecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECC
Q psy8777 166 GCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDP 245 (291)
Q Consensus 166 ~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~ 245 (291)
+++.+++.|++.++++++++.+++.++++++.|+++.+.|||+++++|+|||+++||+||.+||
T Consensus 89 ----------------~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp 152 (261)
T 1iru_C 89 ----------------ELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDP 152 (261)
T ss_dssp ----------------HHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETTTEEEEEEEET
T ss_pred ----------------HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcCcceEEEEEEEEeCCCCcEEEEECC
Confidence 4444555677788899999999999999999999888899999999999999657899999999
Q ss_pred CCceEeeeEEEecCCchHHHHHHHHhccCCCCCCHHHHHHHHHhhC
Q psy8777 246 AGYYCSFKAVSVGVKTTEANSYLEKKFKKKTNYTGDETIQLAISCL 291 (291)
Q Consensus 246 ~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~t~~eai~l~~~~l 291 (291)
+|++.+++++++|+|+.+++++||+.|++. +||++||++++++||
T Consensus 153 ~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~-~ms~eeA~~la~~al 197 (261)
T 1iru_C 153 SGNYGGWKATCIGNNSAAAVSMLKQDYKEG-EMTLKSALALAIKVL 197 (261)
T ss_dssp TTEEEECSEEEESTTTTHHHHHHHHHCCTT-CCCHHHHHHHHHHHH
T ss_pred CceEEeeeeEEeCcccHHHHHHHHHhhccC-CCCHHHHHHHHHHHH
Confidence 999999999999999999999999999874 799999999999885
No 16
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=100.00 E-value=3.7e-48 Score=339.31 Aligned_cols=193 Identities=27% Similarity=0.530 Sum_probs=167.5
Q ss_pred CCCccceeeeeCCCCcchhhhHHHHHHhcCCceEEEEecCCeEEEEEeccCCCCccCCCCcceeEeecCcEEEEEecccc
Q psy8777 6 SAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVMTGMQA 85 (291)
Q Consensus 6 ~~~yd~~~~~fsp~g~~~q~eya~~av~~g~~t~vgi~~~~~vv~a~~~~~~~~l~~~~~~~ki~~i~~~~~~~~~G~~~ 85 (291)
+++||+++|+|||||||||||||+|||++|+ |+|||+++||||||+|+|.+.++.. +.+|||+|++||+|++||+.+
T Consensus 3 ~~~yd~~~t~fsP~Grl~QvEYA~~av~~Gt-t~vgi~~~dgVVlaaD~r~~~gl~~--~~~KI~~i~~~i~~~~aG~~a 79 (263)
T 1iru_F 3 RNQYDNDVTVWSPQGRIHQIEYAMEAVKQGS-ATVGLKSKTHAVLVALKRAQSELAA--HQKKILHVDNHIGISIAGLTA 79 (263)
T ss_dssp -CTTTSCTTCCCTTSCCHHHHHHHHHHHHSC-CEEEEECSSEEEEEEECCCSSTTBC--CCCCEEEEETTEEEEEEECHH
T ss_pred cCCCCCCCccCCCCCeehHHHHHHHHHHcCC-cEEEEEeCCEEEEEEeccccccccc--chhcEEEEcCCEEEEEeCCHH
Confidence 5899999999999999999999999999994 9999999999999999998876542 346666666666666666666
Q ss_pred chhhhhhhhcccccccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcE
Q psy8777 86 DSRYQVQRARAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTV 165 (291)
Q Consensus 86 D~~~~~~~~~~~yd~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~ 165 (291)
|+|.+++
T Consensus 80 D~~~l~~------------------------------------------------------------------------- 86 (263)
T 1iru_F 80 DARLLCN------------------------------------------------------------------------- 86 (263)
T ss_dssp HHHHHHH-------------------------------------------------------------------------
T ss_pred HHHHHHH-------------------------------------------------------------------------
Confidence 6655544
Q ss_pred EEEeecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECC
Q psy8777 166 GCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDP 245 (291)
Q Consensus 166 ~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~ 245 (291)
+++.+++.|++.++++++++.+++.++++++.|+++.+.|||+++++|+|||+ +||+||.+||
T Consensus 87 ----------------~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~D~-~gp~Ly~idp 149 (263)
T 1iru_F 87 ----------------FMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDD-MGPHIFQTCP 149 (263)
T ss_dssp ----------------HHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEET-TEEEEEEECS
T ss_pred ----------------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhcccccccceEEEEEEEEcC-CCCEEEEECC
Confidence 44445566777889999999999999999999999888899999999999997 7899999999
Q ss_pred CCceEeeeEEEecCCchHHHHHHHHhccCCCCCCHHHHHHHHHhhC
Q psy8777 246 AGYYCSFKAVSVGVKTTEANSYLEKKFKKKTNYTGDETIQLAISCL 291 (291)
Q Consensus 246 ~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~t~~eai~l~~~~l 291 (291)
+|++.+++++++|+|+.+++++||+.|++..+||+|||++++++||
T Consensus 150 ~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~ms~eea~~la~~al 195 (263)
T 1iru_F 150 SANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRAL 195 (263)
T ss_dssp SSCEEEESEEEESTTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCEEEeeEEEcCcccHHHHHHHHHHhcccCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999998544899999999999985
No 17
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=100.00 E-value=1.7e-44 Score=311.16 Aligned_cols=192 Identities=25% Similarity=0.453 Sum_probs=182.4
Q ss_pred ccccccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEEeeccccc
Q psy8777 96 AGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVMTGMQAD 175 (291)
Q Consensus 96 ~~yd~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~~sG~~~D 175 (291)
.+||+.+++|||+|||+|+|||++++++|+ +++|+++++||||++|++.+.++. ++.+||++|+++++++++|..+|
T Consensus 3 ~~yd~~~t~fsp~Grl~QvEyA~~av~~Gt-t~vgi~~~dgVvlaaD~r~~~~l~--~~~~Ki~~i~~~i~~~~aG~~aD 79 (233)
T 1ryp_F 3 NNYDGDTVTFSPTGRLFQVEYALEAIKQGS-VTVGLRSNTHAVLVALKRNADELS--SYQKKIIKCDEHMGLSLAGLAPD 79 (233)
T ss_dssp HHHSSCTTCCCTTSCCHHHHHHHHHHHTSC-CEEEEECSSEEEEEEECCCSSTTB--CCCCCEEEEETTEEEEEEECHHH
T ss_pred CcccCCCccCCCCCeehHHHHHHHHHHcCC-CEEEEEcCCEEEEEEEeccccccc--cccCcEEEEcCCEEEEEEechHH
Confidence 469999999999999999999999999988 999999999999999999987765 36699999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECCCCceEeeeEE
Q psy8777 176 SRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAV 255 (291)
Q Consensus 176 ~~~~~~~~~~e~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~~G~~~~~~~~ 255 (291)
++.+.++++.+++.|++.++++++++.+++.+++++|.|+++.+.||++++++|+|||+ +||+||.+||+|++.+++++
T Consensus 80 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~ 158 (233)
T 1ryp_F 80 ARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDK-SGAHLLEFQPSGNVTELYGT 158 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEET-TEEEEEEECTTSCEEEESEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCCcCcceEEEEEEEeC-CcCEEEEECCCCCeeeeeEE
Confidence 99999999999999999999999999999999999999999888899999999999997 68999999999999999999
Q ss_pred EecCCchHHHHHHHHhccCCCCC--CHHHHHHHHHhhC
Q psy8777 256 SVGVKTTEANSYLEKKFKKKTNY--TGDETIQLAISCL 291 (291)
Q Consensus 256 a~G~gs~~~~~~Le~~~~~~~~~--t~~eai~l~~~~l 291 (291)
|+|+|+++++++||+.|++..+| |+|||++++++||
T Consensus 159 aiG~gs~~a~~~Le~~~~~~~~m~~s~eea~~~a~~al 196 (233)
T 1ryp_F 159 AIGARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAI 196 (233)
T ss_dssp EESTTHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHH
T ss_pred EECCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHH
Confidence 99999999999999999864479 9999999999875
No 18
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=100.00 E-value=4.3e-44 Score=310.37 Aligned_cols=190 Identities=26% Similarity=0.556 Sum_probs=181.0
Q ss_pred cccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEEeecccccHHH
Q psy8777 99 DRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVMTGMQADSRY 178 (291)
Q Consensus 99 d~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~~sG~~~D~~~ 178 (291)
|+.+++|||+|||+|+|||++++.+|+ +++|+++++||||++|++.+.+++..++.+||++|+++++++++|..+|++.
T Consensus 1 d~~~t~fsp~Grl~QvEyA~~av~~Gt-t~vgi~~~dgVvlaaD~r~~~g~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~ 79 (242)
T 1ryp_E 1 DRGVSTFSPEGRLFQVEYSLEAIKLGS-TAIGIATKEGVVLGVEKRATSPLLESDSIEKIVEIDRHIGCAMSGLTADARS 79 (242)
T ss_dssp CCCTTCBCTTSCBHHHHHHHHHHTTSC-CEEEEECSSCEEEEEECCCSSTTBCGGGCCCEEEEETTEEEEEEESGGGHHH
T ss_pred CCCCceECCCCcChHHHhHHHHHHcCC-CEEEEEECCEEEEEEeecCCCcCccCccCCceEEEcCCEEEEEeecHHHHHH
Confidence 578899999999999999999999988 9999999999999999999977766667899999999999999999999999
Q ss_pred HHHHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCc------ceeeeeeeeEEEEeCCCCcEEEEECCCCceEee
Q psy8777 179 QVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNAE------MRPLGCSMILISYDENEGPLIYKTDPAGYYCSF 252 (291)
Q Consensus 179 ~~~~~~~e~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~------~~p~~~~~li~G~d~~~gp~Ly~~d~~G~~~~~ 252 (291)
+.++++.+++.|++.++++++++.+++.++++++.|+++.+ .|||+++++|+|||+++||+||.+||+|++.++
T Consensus 80 l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~ 159 (242)
T 1ryp_E 80 MIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRY 159 (242)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEETTTEEEEEEECTTSCEEEB
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccccccCcceEEEEEEEEeCCCCCEEEEECCCCCEecc
Confidence 99999999999999999999999999999999998888876 899999999999995578999999999999999
Q ss_pred eEEEecCCchHHHHHHHHhccCCCCCCHHHHHHHHHhhC
Q psy8777 253 KAVSVGVKTTEANSYLEKKFKKKTNYTGDETIQLAISCL 291 (291)
Q Consensus 253 ~~~a~G~gs~~~~~~Le~~~~~~~~~t~~eai~l~~~~l 291 (291)
+++++|+|+.+++++||+.|++ +||+|||++++++||
T Consensus 160 ~~~aiGsgs~~a~~~Le~~~~~--~ms~eea~~la~~al 196 (242)
T 1ryp_E 160 NAKAIGSGSEGAQAELLNEWHS--SLTLKEAELLVLKIL 196 (242)
T ss_dssp SEEEESTTHHHHHHHHHHHCCT--TCCHHHHHHHHHHHH
T ss_pred CEEEECCCCHHHHHHHHHhhcc--CCCHHHHHHHHHHHH
Confidence 9999999999999999999999 999999999999985
No 19
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=100.00 E-value=8.4e-37 Score=266.57 Aligned_cols=177 Identities=16% Similarity=0.228 Sum_probs=162.0
Q ss_pred cccCCCCchh-hHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEEeecccccHHHHHH
Q psy8777 103 TIFSPEGRLY-QVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQ 181 (291)
Q Consensus 103 ~~~sp~grl~-qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~~sG~~~D~~~~~~ 181 (291)
..++|++++. |+|||++++.+|+ +++|+++++||||++|++ .++.+|||+|+++++++++|..+|++.+.+
T Consensus 5 ~~~sPe~~~~~qvEYA~~av~~Gt-t~vgi~~~dgVVlaaD~r-------s~~~~KI~~I~d~i~~~~aG~~aD~~~l~~ 76 (259)
T 1q5q_A 5 YYASAEQIMRDRSELARKGIARGR-SVVVLTFRDGVLFVAENP-------STALHKVSELYDRLGFAAVGKYNEFENLRR 76 (259)
T ss_dssp ----CHHHHHHHHHHHHHHHHTSC-CEEEEECSSEEEEEECCS-------CSSSCSEEEEETTEEEEEEECHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHHhcCC-cEEEEEeCCEEEEEEecC-------CCCcCcEEEeCCCEEEEEccCHHHHHHHHH
Confidence 3579999995 9999999999998 999999999999999987 256789999999999999999999999999
Q ss_pred HHHHHHHHhHhhhC-CCCCHHHHHHHHHH-HHHHhhhcCcceeeeeeeeEEEEe--C-CCCcEEEEECCCCceE-eeeEE
Q psy8777 182 RARYEAASFKYKHG-YSMPIDQLCNRIAD-ISQVYTQNAEMRPLGCSMILISYD--E-NEGPLIYKTDPAGYYC-SFKAV 255 (291)
Q Consensus 182 ~~~~e~~~~~~~~~-~~~s~~~l~~~l~~-~~~~~~~~~~~~p~~~~~li~G~d--~-~~gp~Ly~~d~~G~~~-~~~~~ 255 (291)
+++.+++.+.+.++ .+++++.+++.+++ +.|.|+. +.|||+++++|+||| + ++||+||.+||+|++. +++++
T Consensus 77 ~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~q~yt~--~~rP~~v~~lvaG~D~~~~~~gp~Ly~idp~G~~~~~~~~~ 154 (259)
T 1q5q_A 77 AGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTE--QPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFV 154 (259)
T ss_dssp HHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHH--SSSCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEEESSEE
T ss_pred HHHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHhcc--CCCCceEEEEEEEEcccCCCCCCEEEEECCCCceeeCCCEE
Confidence 99999999999988 49999999999999 7777873 679999999999999 3 4789999999999999 78999
Q ss_pred EecCCchHHHHHHHHhccCCCCCCHHHHHHHHHhhC
Q psy8777 256 SVGVKTTEANSYLEKKFKKKTNYTGDETIQLAISCL 291 (291)
Q Consensus 256 a~G~gs~~~~~~Le~~~~~~~~~t~~eai~l~~~~l 291 (291)
++|+|++.++++||+.|++ +||++||++++++||
T Consensus 155 aiG~gs~~a~~~Le~~~~~--~ms~eea~~la~~al 188 (259)
T 1q5q_A 155 VMGGTTEPIATAMRESYRA--DLDLEAAVGIAVNAL 188 (259)
T ss_dssp EESSSHHHHHHHHHHHCCT--TCCHHHHHHHHHHHH
T ss_pred EECCChHHHHHHHHhhccC--CCCHHHHHHHHHHHH
Confidence 9999999999999999999 999999999999985
No 20
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=100.00 E-value=9.4e-36 Score=257.69 Aligned_cols=167 Identities=17% Similarity=0.246 Sum_probs=156.8
Q ss_pred hHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEEeecccccHHHHHHHHHHHHHHhHh
Q psy8777 113 QVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKY 192 (291)
Q Consensus 113 qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~~sG~~~D~~~~~~~~~~e~~~~~~ 192 (291)
++|||++++++|+ +++|+++++||||++|++ .++.+|||+|++|++++++|+.+|++.+.+.++.+++.|++
T Consensus 16 r~EYA~~av~~Gt-T~vgi~~kdgVVlaadkr-------~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~l~~~ 87 (248)
T 3mi0_A 16 RSELARKGIARAK-SVVALAYAGGVLFVAENP-------SRSLQKISELYDRVGFAAAGKFNEFDNLRRGGIQFADTRGY 87 (248)
T ss_dssp HHHHHHHHHHTSC-CEEEEEETTEEEEEEECC-------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHhCCC-cEEEEEeCCEEEEEEeCC-------CCCCCCeEEECCCEEEEEccCHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999988 999999999999999987 25678999999999999999999999999999999999999
Q ss_pred hhC-CCCCHHHHHHHHH-HHHHHhhhcCcceeeeeeeeEEEEeC---CCCcEEEEECCCCceEe-eeEEEecCCchHHHH
Q psy8777 193 KHG-YSMPIDQLCNRIA-DISQVYTQNAEMRPLGCSMILISYDE---NEGPLIYKTDPAGYYCS-FKAVSVGVKTTEANS 266 (291)
Q Consensus 193 ~~~-~~~s~~~l~~~l~-~~~~~~~~~~~~~p~~~~~li~G~d~---~~gp~Ly~~d~~G~~~~-~~~~a~G~gs~~~~~ 266 (291)
.++ ++++++.+++.++ .+.|.|++ +.|||+++++|+|||+ ++||+||++||+|++.. ++++|+|+|++.+++
T Consensus 88 ~~~~~~i~v~~la~~l~~~l~q~yt~--~~rP~gv~~liaG~D~~~~~~gp~Ly~~Dp~G~~~~e~~~~a~Gsgs~~a~~ 165 (248)
T 3mi0_A 88 AYDRRDVTGRQLANVYAQTLGTIFTE--QAKPYEVELCVAEVAHYGETKRPELYRITYDGSIADEPHFVVMGGTTEPIAN 165 (248)
T ss_dssp HSCGGGCCHHHHHHHHHHHHHHHHHH--SSSCCCEEEEEEECCCTTCCCCCEEEEECTTSCEEEESSEEEESSCHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHHHHHhcc--CCCCceEEEEEEEEcCCCCCCCCEEEEECCCeEEeecccEEEECccHHHHHH
Confidence 999 8999999999999 77888987 6799999999999997 47899999999999995 999999999999999
Q ss_pred HHHHhccCCCCCCHHHHHHHHHhhC
Q psy8777 267 YLEKKFKKKTNYTGDETIQLAISCL 291 (291)
Q Consensus 267 ~Le~~~~~~~~~t~~eai~l~~~~l 291 (291)
+||++|++ +||+|||++++++||
T Consensus 166 ~Le~~y~~--~mt~eeai~la~~aL 188 (248)
T 3mi0_A 166 ALKESYAE--NASLTDALRIAVAAL 188 (248)
T ss_dssp HHHHHCCT--TCCHHHHHHHHHHHH
T ss_pred HHHhhcCC--CCCHHHHHHHHHHHH
Confidence 99999999 999999999999985
No 21
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=100.00 E-value=1e-33 Score=241.11 Aligned_cols=163 Identities=20% Similarity=0.370 Sum_probs=149.7
Q ss_pred hhcCCceeEEEEecccEEEEEeeccCC-CcccCCCCcceEEEecCcEEEEeecccccHHHHHHHHHHHHHHhHhhhCCCC
Q psy8777 120 AINQGGVTSVAVKGVDTAVVATEKKVP-DSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSM 198 (291)
Q Consensus 120 ~~~~g~~~~igi~~~~~vvl~~d~~~~-~~l~~~~~~~kI~~i~~~~~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~ 198 (291)
++.+|+ +++|+++++|||+++|++.+ +.++..++.+||++|+++++++++|..+|++.+.++++.+++.|++.+++++
T Consensus 4 ~~~~Gt-t~vgi~~~dgVvlaaD~r~~~g~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 82 (217)
T 1yar_H 4 TLETGT-TTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNM 82 (217)
T ss_dssp -----C-CEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCc-cEEEEEeCCEEEEEEcCCCCCCCEEecCccCCeEEeCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 445676 99999999999999999998 4677777889999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECCCCceEeeeEEEecCCchHHHHHHHHhccCCCCC
Q psy8777 199 PIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKKKTNY 278 (291)
Q Consensus 199 s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~ 278 (291)
+++.+++.++++++.+ +.|||+++++|+||| +||+||.+||+|++.+++++|+|+|+++++++||+.|++ +|
T Consensus 83 ~v~~la~~l~~~~~~~----r~rp~~v~~lvaG~D--~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~--~~ 154 (217)
T 1yar_H 83 PIEAVATLLSNMLNQV----KYMPYMVQLLVGGID--TAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSE--KM 154 (217)
T ss_dssp CHHHHHHHHHHHHHHT----TTSCCCEEEEEEEES--SSEEEEEECTTCCEEEESEEEESTTHHHHHHHHHHHCCT--TC
T ss_pred CHHHHHHHHHHHHHhc----CCCCceEEEEEEEEC--CCCEEEEECCCCCeEecCEEEEcCCHHHHHHHHHhhccc--CC
Confidence 9999999999999653 378999999999999 589999999999999999999999999999999999999 99
Q ss_pred CHHHHHHHHHhhC
Q psy8777 279 TGDETIQLAISCL 291 (291)
Q Consensus 279 t~~eai~l~~~~l 291 (291)
|+|||++++++||
T Consensus 155 s~eea~~la~~al 167 (217)
T 1yar_H 155 TVDEGVDLVIRAI 167 (217)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999999885
No 22
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=5.5e-34 Score=243.12 Aligned_cols=160 Identities=25% Similarity=0.356 Sum_probs=150.7
Q ss_pred eeEEEEecccEEEEEeeccCCC-cccCCCCcceEEEecCcEEEEeecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHH
Q psy8777 126 VTSVAVKGVDTAVVATEKKVPD-SLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLC 204 (291)
Q Consensus 126 ~~~igi~~~~~vvl~~d~~~~~-~l~~~~~~~kI~~i~~~~~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~ 204 (291)
++++|+++++||||++|++.+. .++..++.+|||+|+++++++++|..+|++.+.++++.+++.|++.++.+++++.++
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 81 (219)
T 3h4p_a 2 TTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLACA 81 (219)
T ss_dssp CCEEEEEETTEEEEECCCCEEETTEEEETTCCCEEEEETTEEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHHH
T ss_pred ccEEEEEECCEEEEEEcCCcccCCEeeccccceeEEecCCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 4899999999999999999984 466677889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECCCCceEeee-EEEecCCchHHHHHHHHhccCCCCCCHHHH
Q psy8777 205 NRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFK-AVSVGVKTTEANSYLEKKFKKKTNYTGDET 283 (291)
Q Consensus 205 ~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~~G~~~~~~-~~a~G~gs~~~~~~Le~~~~~~~~~t~~ea 283 (291)
+.++++++.+ +.+||+++++|+|||+++||+||.+||+|++.+++ ++++|+|+++++++||+.|++ +||+|||
T Consensus 82 ~~l~~~~~~~----~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~--~ms~eea 155 (219)
T 3h4p_a 82 TLLSNILHSS----RMFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDR--DMSVEEG 155 (219)
T ss_dssp HHHHHHHHHT----TTTTCCCCCEEEEEETTTEEEEEEECSSCCEEECSSEEEESTTHHHHHHHHHTSCCT--TCCHHHH
T ss_pred HHHHHHHHHh----cCCCceEEEEEEEEeCCCCcEEEEECCCCceEecCCEEEEcCCHHHHHHHHHHhcCC--CCCHHHH
Confidence 9999999665 36899999999999976789999999999999999 999999999999999999999 9999999
Q ss_pred HHHHHhhC
Q psy8777 284 IQLAISCL 291 (291)
Q Consensus 284 i~l~~~~l 291 (291)
++++++||
T Consensus 156 ~~la~~al 163 (219)
T 3h4p_a 156 IKLALNAL 163 (219)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999985
No 23
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=100.00 E-value=1.5e-33 Score=239.57 Aligned_cols=164 Identities=19% Similarity=0.291 Sum_probs=151.5
Q ss_pred hcCCceeEEEEecccEEEEEeeccCCCcc-cCCCCcceEEEecCcEEEEeecccccHHHHHHHHHHHHHHhHhhhCCCCC
Q psy8777 121 INQGGVTSVAVKGVDTAVVATEKKVPDSL-VDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMP 199 (291)
Q Consensus 121 ~~~g~~~~igi~~~~~vvl~~d~~~~~~l-~~~~~~~kI~~i~~~~~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s 199 (291)
+++|+ +++|++++++|||++|++.+.++ +..++.+||++|+++++++++|..+|++.+.++++.+++.|+++++++++
T Consensus 6 v~~Gt-t~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 84 (213)
T 1iru_M 6 VFNGG-TILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMT 84 (213)
T ss_dssp CCCCC-EEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred cCCCC-cEEEEEeCCEEEEEECCCcccCCEEecCCCCcEEEcCCCEEEEccccHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 45666 99999999999999999998655 44467899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECCCCceEeeeEEEecCCchHHHHHHHHh--------
Q psy8777 200 IDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKK-------- 271 (291)
Q Consensus 200 ~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~-------- 271 (291)
++.+++.+++++ |+++ .+||+++++|+|||++++|+||.+||+|++.+++++|+|+|+++++++||+.
T Consensus 85 v~~la~~l~~~~--y~~r--~~P~~v~~lvaG~D~~g~p~Ly~id~~G~~~~~~~~aiGsg~~~a~~~Le~~~~~~~~~~ 160 (213)
T 1iru_M 85 TGAIAAMLSTIL--YSRR--FFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQN 160 (213)
T ss_dssp HHHHHHHHHHHH--HHTT--TSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTTCCSCSS
T ss_pred HHHHHHHHHHHH--HhhC--CCCceEEEEEEEEcCCCCEEEEEECCCCCEEECCEEEEeeCHHHHHHHHhhccccccccc
Confidence 999999999998 6654 7999999999999975669999999999999999999999999999999999
Q ss_pred -ccCCCCCCHHHHHHHHHhhC
Q psy8777 272 -FKKKTNYTGDETIQLAISCL 291 (291)
Q Consensus 272 -~~~~~~~t~~eai~l~~~~l 291 (291)
|++ +||+|||++++++||
T Consensus 161 ~~~~--~~s~eea~~l~~~al 179 (213)
T 1iru_M 161 VEHV--PLSLDRAMRLVKDVF 179 (213)
T ss_dssp CCCC--CCCHHHHHHHHHHHH
T ss_pred cCCC--CCCHHHHHHHHHHHH
Confidence 777 999999999999885
No 24
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=100.00 E-value=3.9e-34 Score=247.77 Aligned_cols=208 Identities=19% Similarity=0.324 Sum_probs=142.8
Q ss_pred cceeeeeCCCCcchhhhHHHHHHhcCCceEEEEecCCeEEEEEeccCCCCccCCCCcceeEeecCcEEEEEeccccchhh
Q psy8777 10 DRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVMTGMQADSRY 89 (291)
Q Consensus 10 d~~~~~fsp~g~~~q~eya~~av~~g~~t~vgi~~~~~vv~a~~~~~~~~l~~~~~~~ki~~i~~~~~~~~~G~~~D~~~ 89 (291)
|+++|+|||||||||||||++|+++|+ |+|||+++||||||+|+|.++++..+++.+|||+|++|++|++||+.+|+|.
T Consensus 1 d~~~t~fsp~Grl~QvEyA~~av~~Gt-t~vgi~~~dgVvlaaD~r~~~g~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~ 79 (242)
T 1ryp_E 1 DRGVSTFSPEGRLFQVEYSLEAIKLGS-TAIGIATKEGVVLGVEKRATSPLLESDSIEKIVEIDRHIGCAMSGLTADARS 79 (242)
T ss_dssp CCCTTCBCTTSCBHHHHHHHHHHTTSC-CEEEEECSSCEEEEEECCCSSTTBCGGGCCCEEEEETTEEEEEEESGGGHHH
T ss_pred CCCCceECCCCcChHHHhHHHHHHcCC-CEEEEEECCEEEEEEeecCCCcCccCccCCceEEEcCCEEEEEeecHHHHHH
Confidence 789999999999999999999999995 9999999999999999999999877777899999999999999999999999
Q ss_pred hhhhhcccccccccccCCCCchhhHHHHHhhhcCCceeEEE------EecccEEEEEeeccCCCcccCCCCcceEEEecC
Q psy8777 90 QVQRARAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVA------VKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTP 163 (291)
Q Consensus 90 ~~~~~~~~yd~~~~~~sp~grl~qve~~~~~~~~g~~~~ig------i~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~ 163 (291)
+++.++.+....-..+...-.+..+-.......+..+..-+ .||....+|.+. ++++.+|+||.+||
T Consensus 80 l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG-------~D~~~gp~Ly~idp 152 (242)
T 1ryp_E 80 MIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAG-------HDADDGYQLFHAEP 152 (242)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEE-------EETTTEEEEEEECT
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccccccCcceEEEEEEE-------EeCCCCCEEEEECC
Confidence 99999854322211111111111111111111122111112 456676666664 55457899999999
Q ss_pred cEEEE-eecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEE
Q psy8777 164 TVGCV-MTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILIS 231 (291)
Q Consensus 164 ~~~~~-~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G 231 (291)
.|.+. ....+.+..+...+..++. .++.+|+.+++++.+...+.....+ ...+..+++.++.
T Consensus 153 ~G~~~~~~~~aiGsgs~~a~~~Le~-----~~~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~ 215 (242)
T 1ryp_E 153 SGTFYRYNAKAIGSGSEGAQAELLN-----EWHSSLTLKEAELLVLKILKQVMEE-KLDENNAQLSCIT 215 (242)
T ss_dssp TSCEEEBSEEEESTTHHHHHHHHHH-----HCCTTCCHHHHHHHHHHHHHHHCSS-CCCTTSEEEEEEE
T ss_pred CCCEeccCEEEECCCCHHHHHHHHH-----hhccCCCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEEEE
Confidence 99753 1222333544444444444 3455899999998666666444333 3445556666653
No 25
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=100.00 E-value=8.4e-34 Score=239.75 Aligned_cols=165 Identities=16% Similarity=0.287 Sum_probs=153.7
Q ss_pred HhhhcCCceeEEEEecccEEEEEeeccCCCc-ccCCCCcceEEEecCcEEEEeecccccHHHHHHHHHHHHHHhHhhhCC
Q psy8777 118 FKAINQGGVTSVAVKGVDTAVVATEKKVPDS-LVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGY 196 (291)
Q Consensus 118 ~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~-l~~~~~~~kI~~i~~~~~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~ 196 (291)
.+++.+|+ +++|++++++||+++|++.+.+ ++..++.+||++|+++++++++|..+|++.+.++++.+++.|++.+++
T Consensus 3 ~~av~~Gt-t~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~ 81 (205)
T 1ryp_H 3 KGEVSLGA-SIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGT 81 (205)
T ss_dssp TTCCBCCC-CEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCcCCc-eEEEEEeCCEEEEEEcCCcccCcEEEcCCcCceEEcCCCEEEEccCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 45677877 9999999999999999999855 676677899999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECCCCceEeeeEEEecCCchHHHHHHHHhccCCC
Q psy8777 197 SMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKKKT 276 (291)
Q Consensus 197 ~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~ 276 (291)
++++.+++.++++++.|++ + ++++++|+|||+++||+||.+||+|++.+++++++|+|+++++++||+.|++
T Consensus 82 -~~v~~la~~l~~~~~~~~~----~-~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~-- 153 (205)
T 1ryp_H 82 -PSTETAASVFKELCYENKD----N-LTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRE-- 153 (205)
T ss_dssp -CCHHHHHHHHHHHHHHTTT----T-CCEEEEEEEEETTTEEEEEEECTTSCCEEESEEEESGGGGGGHHHHHHHCCT--
T ss_pred -CCHHHHHHHHHHHHHhhhc----C-ceEEEEEEEEecCCCcEEEEECCCccEEecCEEEEEecHHHHHHHHHhccCC--
Confidence 9999999999999987754 2 9999999999976789999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhC
Q psy8777 277 NYTGDETIQLAISCL 291 (291)
Q Consensus 277 ~~t~~eai~l~~~~l 291 (291)
+||+|||++++++||
T Consensus 154 ~~s~eea~~l~~~al 168 (205)
T 1ryp_H 154 NMSKEETVDFIKHSL 168 (205)
T ss_dssp TCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999999885
No 26
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=100.00 E-value=1.7e-33 Score=237.33 Aligned_cols=159 Identities=22% Similarity=0.366 Sum_probs=150.0
Q ss_pred eeEEEEecccEEEEEeeccCCC-cccCCCCcceEEEecCcEEEEeecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHH
Q psy8777 126 VTSVAVKGVDTAVVATEKKVPD-SLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLC 204 (291)
Q Consensus 126 ~~~igi~~~~~vvl~~d~~~~~-~l~~~~~~~kI~~i~~~~~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~ 204 (291)
++++|+++++||||++|++.+. .++..++.+|||+|+++++++++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (202)
T 1j2q_H 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIA 80 (202)
T ss_dssp CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEECCCcCcCCEEeeccccCEEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 4789999999999999999984 677777889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECCCCceEeee-EEEecCCchHHHHHHHHhccCCCCCCHHHH
Q psy8777 205 NRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFK-AVSVGVKTTEANSYLEKKFKKKTNYTGDET 283 (291)
Q Consensus 205 ~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~~G~~~~~~-~~a~G~gs~~~~~~Le~~~~~~~~~t~~ea 283 (291)
+.++++++.+ +.|||+++++|+|||+ +||+||.+||+|++.+++ ++++|+|+++++++||+.|++ +||+|||
T Consensus 81 ~~l~~~~~~~----r~rp~~~~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~~aiG~g~~~a~~~Le~~~~~--~~s~eea 153 (202)
T 1j2q_H 81 TLTSNLLNSY----RYFPYLVQLLIGGIDS-EGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTP--EIGVDEA 153 (202)
T ss_dssp HHHHHHHHHT----TTSCCCEEEEEEEEET-TEEEEEEECTTCCEEEESSEEEESTTHHHHHHHHHHHCCT--TCCHHHH
T ss_pred HHHHHHHHhh----CCCCceEEEEEEEEeC-CCCEEEEECCCCCeeecCCEEEEcCCHHHHHHHHHhhcCC--CcCHHHH
Confidence 9999999653 3689999999999997 689999999999999999 999999999999999999999 9999999
Q ss_pred HHHHHhhC
Q psy8777 284 IQLAISCL 291 (291)
Q Consensus 284 i~l~~~~l 291 (291)
++++++||
T Consensus 154 ~~la~~al 161 (202)
T 1j2q_H 154 VELAVRAI 161 (202)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999885
No 27
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=100.00 E-value=4.6e-34 Score=243.74 Aligned_cols=169 Identities=17% Similarity=0.214 Sum_probs=156.3
Q ss_pred hhhcCCceeEEEEecccEEEEEeeccCC-CcccCCCCcceEEEecCcEEEEeecccccHHHHHHHHHHHHHHhHh-hhCC
Q psy8777 119 KAINQGGVTSVAVKGVDTAVVATEKKVP-DSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKY-KHGY 196 (291)
Q Consensus 119 ~~~~~g~~~~igi~~~~~vvl~~d~~~~-~~l~~~~~~~kI~~i~~~~~~~~sG~~~D~~~~~~~~~~e~~~~~~-~~~~ 196 (291)
+++.+|+ +++|++++++|||++|++.+ +.++.+++.+||++|+++++++++|..+|++.+.++++.+++.|++ .++.
T Consensus 3 ~av~~Gt-t~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (219)
T 1iru_N 3 NPMVTGT-SVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGH 81 (219)
T ss_dssp SCCSEEC-CCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred CCccCCc-eEEEEEeCCEEEEEECCccccCcEEecCCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4566776 99999999999999999998 4677777889999999999999999999999999999999999998 8999
Q ss_pred CCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECCCCceEeeeEEEecCCchHHHHHHHHhccCCC
Q psy8777 197 SMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKKKT 276 (291)
Q Consensus 197 ~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~ 276 (291)
+++++.+++.+++++ |+++...+||+++++|+|+|+ +||+||.+||+|++.+++++++|+|+++++++||+.|++..
T Consensus 82 ~~~v~~la~~l~~~l--y~~r~~~~P~~v~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~ 158 (219)
T 1iru_N 82 SYSPRAIHSWLTRAM--YSRRSKMNPLWNTMVIGGYAD-GESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQP 158 (219)
T ss_dssp CCCHHHHHHHHHHHH--HHHHHTTCCCCEEEEEEEEET-TEEEEEEECSSCCEEECSEEECTTHHHHTHHHHHHHHTSCS
T ss_pred CCCHHHHHHHHHHHH--HHhcccCCCceEEEEEEEEEC-CCCEEEEECCCCCeEECCeEEECccHHHHHHHHHhhcCCCC
Confidence 999999999999998 556666899999999999997 58999999999999999999999999999999999998855
Q ss_pred CCCHHHHHHHHHhhC
Q psy8777 277 NYTGDETIQLAISCL 291 (291)
Q Consensus 277 ~~t~~eai~l~~~~l 291 (291)
+||++||++++++||
T Consensus 159 ~mt~eea~~l~~~al 173 (219)
T 1iru_N 159 VLSQTEARDLVERCM 173 (219)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 899999999999985
No 28
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=100.00 E-value=1.5e-33 Score=238.21 Aligned_cols=159 Identities=15% Similarity=0.271 Sum_probs=150.0
Q ss_pred eeEEEEecccEEEEEeeccCCCc-ccCCCCcceEEEecCcEEEEeecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHH
Q psy8777 126 VTSVAVKGVDTAVVATEKKVPDS-LVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLC 204 (291)
Q Consensus 126 ~~~igi~~~~~vvl~~d~~~~~~-l~~~~~~~kI~~i~~~~~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~ 204 (291)
++++|+++++||||++|++.+.+ ++..++.+||++|+++++++++|..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (205)
T 1iru_H 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAA 80 (205)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEecCCcCceEEcCCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 47899999999999999999855 77767789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECCCCceEeeeEEEecCCchHHHHHHHHhccCCCCCCHHHHH
Q psy8777 205 NRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKKKTNYTGDETI 284 (291)
Q Consensus 205 ~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~t~~eai 284 (291)
+.++++++.|++ |++++++|+|||+++||+||.+||+|++.+++++++|+|+++++++||+.|++ +||+|||+
T Consensus 81 ~~l~~~~~~~~~-----p~~~~~lvaG~D~~~gp~ly~~d~~G~~~~~~~~a~Gsgs~~a~~~Le~~~~~--~~s~eea~ 153 (205)
T 1iru_H 81 SLFKEMCYRYRE-----DLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYRE--GMTKEECL 153 (205)
T ss_dssp HHHHHHHHHTTT-----TCCEEEEEEEEETTTEEEEEEECTTSCCEECSEEEESGGGGGGHHHHHHHCCT--TCCHHHHH
T ss_pred HHHHHHHHhcCc-----CccEEEEEEEEeCCCCCEEEEECCCCcEEecCEEEECCCHHHHHHHHHHhcCC--CCCHHHHH
Confidence 999999977643 99999999999976789999999999999999999999999999999999999 99999999
Q ss_pred HHHHhhC
Q psy8777 285 QLAISCL 291 (291)
Q Consensus 285 ~l~~~~l 291 (291)
+++++||
T Consensus 154 ~l~~~al 160 (205)
T 1iru_H 154 QFTANAL 160 (205)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999885
No 29
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=100.00 E-value=1.8e-33 Score=236.53 Aligned_cols=162 Identities=15% Similarity=0.252 Sum_probs=149.5
Q ss_pred eeEEEEecccEEEEEeeccCCCcc-cCCCCcceEEEecCcEEEEeecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHH
Q psy8777 126 VTSVAVKGVDTAVVATEKKVPDSL-VDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLC 204 (291)
Q Consensus 126 ~~~igi~~~~~vvl~~d~~~~~~l-~~~~~~~kI~~i~~~~~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~ 204 (291)
++++|+++++||||++|++.+.++ +..++.+||++|+++++++++|..+|++.+.++++.+++.|++.++++++++.++
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 81 (198)
T 1ryp_K 2 DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVS 81 (198)
T ss_dssp CCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred ceEEEEEECCEEEEEECCCcccCCEEEecCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 389999999999999999998544 4356789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCcceeeeeeeeEEEEeC-CCCcEEEEECCCCceEeeeEEEecCCchHHHHHHHHhccCCCCCCHHHH
Q psy8777 205 NRIADISQVYTQNAEMRPLGCSMILISYDE-NEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKKKTNYTGDET 283 (291)
Q Consensus 205 ~~l~~~~~~~~~~~~~~p~~~~~li~G~d~-~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~t~~ea 283 (291)
+.++++++.+++ .++||+++++|+|||+ ++||+||.+||+|++.+++++++|+|+++++++||+.|++ +||+|||
T Consensus 82 ~~l~~~l~~~~~--~r~p~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~--~~s~eea 157 (198)
T 1ryp_K 82 SFVRQELAKSIR--SRRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRP--DMTTEEG 157 (198)
T ss_dssp HHHHHHHHHHTT--SSSCCCEEEEEEEEETTTTEEEEEEECTTCCEEECSEEECTTHHHHHHHHHHHHCCT--TCCHHHH
T ss_pred HHHHHHHHHhcc--cCCCceEEEEEEEEeCCCCCcEEEEECCCCCEEECCEEEEcccHHHHHHHHHhhcCC--CCCHHHH
Confidence 999999977653 2359999999999996 4789999999999999999999999999999999999999 9999999
Q ss_pred HHHHHhhC
Q psy8777 284 IQLAISCL 291 (291)
Q Consensus 284 i~l~~~~l 291 (291)
++++++||
T Consensus 158 ~~l~~~al 165 (198)
T 1ryp_K 158 LDLLKLCV 165 (198)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999885
No 30
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=100.00 E-value=2.3e-34 Score=247.85 Aligned_cols=204 Identities=20% Similarity=0.286 Sum_probs=140.8
Q ss_pred CCccceeeeeCCCCcchhhhHHHHHHhcCCceEEEEecCCeEEEEEeccCCCCccCCCCcceeEeecCcEEEEEeccccc
Q psy8777 7 AGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVMTGMQAD 86 (291)
Q Consensus 7 ~~yd~~~~~fsp~g~~~q~eya~~av~~g~~t~vgi~~~~~vv~a~~~~~~~~l~~~~~~~ki~~i~~~~~~~~~G~~~D 86 (291)
++||+++|+|||||||||||||+|||++|+ |+|||+++||||||+|+|.+.++.. +.+||++|++|++|++||+.+|
T Consensus 3 ~~yd~~~t~fsp~Grl~QvEyA~~av~~Gt-t~vgi~~~dgVvlaaD~r~~~~l~~--~~~Ki~~i~~~i~~~~aG~~aD 79 (233)
T 1ryp_F 3 NNYDGDTVTFSPTGRLFQVEYALEAIKQGS-VTVGLRSNTHAVLVALKRNADELSS--YQKKIIKCDEHMGLSLAGLAPD 79 (233)
T ss_dssp HHHSSCTTCCCTTSCCHHHHHHHHHHHTSC-CEEEEECSSEEEEEEECCCSSTTBC--CCCCEEEEETTEEEEEEECHHH
T ss_pred CcccCCCccCCCCCeehHHHHHHHHHHcCC-CEEEEEcCCEEEEEEEecccccccc--ccCcEEEEcCCEEEEEEechHH
Confidence 479999999999999999999999999995 9999999999999999999998764 5699999999999999999999
Q ss_pred hhhhhhhhcccc-------cccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEE
Q psy8777 87 SRYQVQRARAGF-------DRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLY 159 (291)
Q Consensus 87 ~~~~~~~~~~~y-------d~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~ 159 (291)
+|.+++.++.+. +.++++......+.++- ..+. ...+.+|....+|.+. +++ ++|+||
T Consensus 80 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~--~~~t-----~~~~~rp~~v~~lvaG-------~D~-~gp~Ly 144 (233)
T 1ryp_F 80 ARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKA--QKNT-----QSYGGRPYGVGLLIIG-------YDK-SGAHLL 144 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHH--HHHH-----HBTTCCCCCEEEEEEE-------EET-TEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH--HHHh-----cccCCcCcceEEEEEE-------EeC-CcCEEE
Confidence 999999998442 22232221111111111 0110 1112356666666654 443 689999
Q ss_pred EecCcEEEE-eecccccHHHHHHHHHHHHHHhHhhhCCCC--CHHHHHHHHHHHHHHhhhcC-cceeeeeeeeEEEE
Q psy8777 160 SLTPTVGCV-MTGMQADSRYQVQRARYEAASFKYKHGYSM--PIDQLCNRIADISQVYTQNA-EMRPLGCSMILISY 232 (291)
Q Consensus 160 ~i~~~~~~~-~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~--s~~~l~~~l~~~~~~~~~~~-~~~p~~~~~li~G~ 232 (291)
.+||.|.+. ....+.+..+...+..++...... .+| +.+++++.+.+.+.... +. ...+..+++.++..
T Consensus 145 ~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~---~~m~~s~eea~~~a~~al~~~~-~d~~~s~~~i~v~vi~~ 217 (233)
T 1ryp_F 145 EFQPSGNVTELYGTAIGARSQGAKTYLERTLDTF---IKIDGNPDELIKAGVEAISQSL-RDESLTVDNLSIAIVGK 217 (233)
T ss_dssp EECTTSCEEEESEEEESTTHHHHHHHHHHHHHHH---TTCCSCHHHHHHHHHHHHTTSC-CSSCCCTTTEEEEEEET
T ss_pred EECCCCCeeeeeEEEECCCcHHHHHHHHHHhccc---cccCCCHHHHHHHHHHHHHHHh-hcccCCCCcEEEEEEEC
Confidence 999999753 222333355555555555432221 267 99999996666553333 22 23456677777643
No 31
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=100.00 E-value=2.7e-33 Score=237.83 Aligned_cols=160 Identities=18% Similarity=0.278 Sum_probs=150.9
Q ss_pred eeEEEEecccEEEEEeeccCCC-cccCCCCcceEEEecCcEEEEeecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHH
Q psy8777 126 VTSVAVKGVDTAVVATEKKVPD-SLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLC 204 (291)
Q Consensus 126 ~~~igi~~~~~vvl~~d~~~~~-~l~~~~~~~kI~~i~~~~~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~ 204 (291)
++++|+++++||||++|++.+. .++..++.+||++|+++++++++|..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (212)
T 1ryp_L 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS 80 (212)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCCeEecCcccceeeeCCcEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 4789999999999999999984 677777889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECCCCceEeeeEEEecCCchHHHHHHHHhccCCCCCCHHHHH
Q psy8777 205 NRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKKKTNYTGDETI 284 (291)
Q Consensus 205 ~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~t~~eai 284 (291)
+.++++++.|++ .|++++++|+|||++++|+||.+||+|++.+++++|+|+|+++++++||+.|++ +||++||+
T Consensus 81 ~~l~~~~~~~~~----~p~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~--~~s~eea~ 154 (212)
T 1ryp_L 81 KILSNLVYQYKG----AGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKW--DLSVEDAL 154 (212)
T ss_dssp HHHHHHHHHTTT----SCCCBEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHHHCCT--TCCHHHHH
T ss_pred HHHHHHHHhhCC----CCceEEEEEEEEeCCCCCEEEEEcCCceeEecCCEEEcCCHHHHHHHHHhhCCC--CCCHHHHH
Confidence 999999987754 489999999999965789999999999999999999999999999999999999 99999999
Q ss_pred HHHHhhC
Q psy8777 285 QLAISCL 291 (291)
Q Consensus 285 ~l~~~~l 291 (291)
+++++||
T Consensus 155 ~la~~al 161 (212)
T 1ryp_L 155 YLGKRSI 161 (212)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999885
No 32
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=100.00 E-value=5.8e-34 Score=245.32 Aligned_cols=170 Identities=15% Similarity=0.196 Sum_probs=156.8
Q ss_pred hhhcCCceeEEEEecccEEEEEeeccCC-CcccCCCCcceEEEecCcEEEEeecccccHHHHHHHHHHHHHHhHh-----
Q psy8777 119 KAINQGGVTSVAVKGVDTAVVATEKKVP-DSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKY----- 192 (291)
Q Consensus 119 ~~~~~g~~~~igi~~~~~vvl~~d~~~~-~~l~~~~~~~kI~~i~~~~~~~~sG~~~D~~~~~~~~~~e~~~~~~----- 192 (291)
+++.+|+ +++|++++++|||++|++.+ +.++..++.+||++|+++++++++|..+|++.+.++++.+++.|++
T Consensus 3 ~av~~Gt-t~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (233)
T 1ryp_N 3 QPIVTGT-SVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLA 81 (233)
T ss_dssp CCCEEEC-CEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTT
T ss_pred ccccCCc-eEEEEEECCEEEEEEcCccccCCeeecCCcCceEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHhhccchh
Confidence 4566777 99999999999999999998 4667777889999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECCCCceEeeeEEEecCCchHHHHHHHHhc
Q psy8777 193 KHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKF 272 (291)
Q Consensus 193 ~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~ 272 (291)
.++.+++++.+++.+++++ |+++.+.+||+++++|+|||+++||+||.+||+|++.+++++++|+|+++++++||+.|
T Consensus 82 ~~~~~~~v~~la~~l~~~l--y~~r~~~~P~~v~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~ 159 (233)
T 1ryp_N 82 DAEEALEPSYIFEYLATVM--YQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVV 159 (233)
T ss_dssp TTTTSCCHHHHHHHHHHHH--HHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHHHHHHHTTTC
T ss_pred hcCCCCCHHHHHHHHHHHH--HHhcCCCCCceEEEEEEEEcCCCCEEEEEECCCcCeEEcCEEEECcCHHHHHHHHHHhh
Confidence 8999999999999999998 66666689999999999999756899999999999999999999999999999999999
Q ss_pred cCCC---CCCHHHHHHHHHhhC
Q psy8777 273 KKKT---NYTGDETIQLAISCL 291 (291)
Q Consensus 273 ~~~~---~~t~~eai~l~~~~l 291 (291)
++.. +||+|||++++++||
T Consensus 160 ~~~~~~~~ms~eea~~la~~al 181 (233)
T 1ryp_N 160 DRESDIPKTTVQVAEEAIVNAM 181 (233)
T ss_dssp SSGGGGGGCCHHHHHHHHHHHH
T ss_pred ccccccCCCCHHHHHHHHHHHH
Confidence 8743 799999999999985
No 33
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=100.00 E-value=2.5e-33 Score=247.89 Aligned_cols=171 Identities=20% Similarity=0.223 Sum_probs=159.0
Q ss_pred HHhhhcCCceeEEEEecccEEEEEeeccCC-CcccCCCCcceEEEecCcEEEEeecccccHHHHHHHHHHHHHHhHhhhC
Q psy8777 117 AFKAINQGGVTSVAVKGVDTAVVATEKKVP-DSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHG 195 (291)
Q Consensus 117 ~~~~~~~g~~~~igi~~~~~vvl~~d~~~~-~~l~~~~~~~kI~~i~~~~~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~ 195 (291)
+.+++.+|+ +++|+++++||||++|++.+ +.++..++.+|||+|+++++++++|..+|++.+.++++.+++.|++.++
T Consensus 58 a~~Av~~Gt-TiVgIk~kdGVVlAaD~r~t~G~li~~~~~~KI~~I~~~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~g 136 (294)
T 1q5r_H 58 SGDLAPHGT-TIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEG 136 (294)
T ss_dssp --CCSCBCC-CEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhcCc-eEEEEEECCEEEEEEcCccccCceeecCCcceEEEECCcEEEEEeecHHHHHHHHHHHHHHHHHhhHhhC
Confidence 778889988 99999999999999999998 4677777889999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCC-----cEEEEECCCCceEee--eEEEecCCchHHHHHH
Q psy8777 196 YSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEG-----PLIYKTDPAGYYCSF--KAVSVGVKTTEANSYL 268 (291)
Q Consensus 196 ~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~g-----p~Ly~~d~~G~~~~~--~~~a~G~gs~~~~~~L 268 (291)
++++++.+++.|+++++.++.+. .+||+++++|+|||++++ |+||.+||+|++.++ +++++|+|+.+++++|
T Consensus 137 ~~isv~~la~~la~~l~~~~~~~-~rp~~v~lLvaG~D~~~g~~~~~p~Ly~iDp~G~~~e~~~~~~AiGsgs~~a~~~L 215 (294)
T 1q5r_H 137 VPLTFDGKANRLASMVRGNLGAA-MQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSAL 215 (294)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHH-TTTTCEEEEEEEECTTCSCTTSCEEEEEECSSSCEEECCSSEEEESTTHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhhh-cCCcceEEEEEEEeCCCCcCCCCCEEEEECCCCeEEecCCCeEEEecCcHHHHHHH
Confidence 99999999999999998876643 799999999999997556 999999999999999 8999999999999999
Q ss_pred HHhccCCCCCCHHHHHHHHHhhC
Q psy8777 269 EKKFKKKTNYTGDETIQLAISCL 291 (291)
Q Consensus 269 e~~~~~~~~~t~~eai~l~~~~l 291 (291)
|+.|++ +||+|||++++++||
T Consensus 216 e~~y~~--~ms~eEAi~la~~aL 236 (294)
T 1q5r_H 216 KKIYSP--DSDEETALRAAIESL 236 (294)
T ss_dssp HHHCCS--SCCHHHHHHHHHHHH
T ss_pred HHhccC--CCCHHHHHHHHHHHH
Confidence 999999 999999999999985
No 34
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=100.00 E-value=3.2e-33 Score=240.88 Aligned_cols=163 Identities=20% Similarity=0.235 Sum_probs=153.0
Q ss_pred eeEEEEecccEEEEEeeccCC-CcccCCCCcceEEEecCcEEEEeecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHH
Q psy8777 126 VTSVAVKGVDTAVVATEKKVP-DSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLC 204 (291)
Q Consensus 126 ~~~igi~~~~~vvl~~d~~~~-~~l~~~~~~~kI~~i~~~~~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~ 204 (291)
++++|+++++||||++|++.+ +.++..++.+||++|+++++++++|..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 tT~vgi~~~dgVVlaaD~r~~~g~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (235)
T 1q5q_H 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKA 80 (235)
T ss_dssp CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEECCCCCcCCEEecCCcCcEEEeCCcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Confidence 478999999999999999998 4677777889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCC-----cEEEEECCCCceEee--eEEEecCCchHHHHHHHHhccCCCC
Q psy8777 205 NRIADISQVYTQNAEMRPLGCSMILISYDENEG-----PLIYKTDPAGYYCSF--KAVSVGVKTTEANSYLEKKFKKKTN 277 (291)
Q Consensus 205 ~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~g-----p~Ly~~d~~G~~~~~--~~~a~G~gs~~~~~~Le~~~~~~~~ 277 (291)
+.|+++++.++++. .|||+++++|+|||++++ |+||.+||+|++.++ +++++|+|+.+++++||+.|++ +
T Consensus 81 ~~l~~~~~~~~~~~-~rp~~v~~lvaG~D~~~g~~~~~p~Ly~idp~G~~~~~~~~~~aiGsgs~~a~~~Le~~~~~--~ 157 (235)
T 1q5q_H 81 NRLASMVRGNLGAA-MQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSP--D 157 (235)
T ss_dssp HHHHHHHHTTHHHH-TTTCCEEEEEEEECTTCSSTTSCEEEEEECTTSCEEECCSSEEEESTTHHHHHHHHHHHCCT--T
T ss_pred HHHHHHHHHHHHhh-hcccceEEEEEEEECCCCccCCCCEEEEECCCCceEEeCCCeEEECCCHHHHHHHHHhhcCC--C
Confidence 99999998876543 789999999999997557 999999999999999 9999999999999999999999 9
Q ss_pred CCHHHHHHHHHhhC
Q psy8777 278 YTGDETIQLAISCL 291 (291)
Q Consensus 278 ~t~~eai~l~~~~l 291 (291)
||+|||++++++||
T Consensus 158 ms~eeA~~la~~al 171 (235)
T 1q5q_H 158 SDEETALRAAIESL 171 (235)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999999885
No 35
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=100.00 E-value=6.1e-33 Score=237.18 Aligned_cols=165 Identities=19% Similarity=0.326 Sum_probs=151.5
Q ss_pred hhcCCceeEEEEecccEEEEEeeccCCCcc-cCCCCcceEEEecCcEEEEeecccccHHHHHHHHHHHHHHhHhhhC-CC
Q psy8777 120 AINQGGVTSVAVKGVDTAVVATEKKVPDSL-VDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHG-YS 197 (291)
Q Consensus 120 ~~~~g~~~~igi~~~~~vvl~~d~~~~~~l-~~~~~~~kI~~i~~~~~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~-~~ 197 (291)
++.+|+ +++|++++++|||++|++.+.++ +..++.+|||+|+++++++++|..+|++.+.++++.+++.|++.++ ++
T Consensus 5 ~v~~Gt-t~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 83 (222)
T 1ryp_M 5 YGDNGG-TILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDKK 83 (222)
T ss_dssp CCCCCC-EEEEEECSSCEEEEEECCEEETTEEEESCCCCCEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred cccCCc-cEEEEEeCCEEEEEEecccccCCEecCCCcCcEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 345676 99999999999999999998554 4566789999999999999999999999999999999999999999 99
Q ss_pred CCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECCCCceEeeeEEEecCCchHHHHHHHHh------
Q psy8777 198 MPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKK------ 271 (291)
Q Consensus 198 ~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~------ 271 (291)
++++.+++.+++++ |+++ .+||+++++|+|||++++|+||.+||+|++.+++++++|+|+.+++++||+.
T Consensus 84 ~~v~~la~~l~~~l--y~~r--~~P~~v~~ivaG~D~~g~p~Ly~~dp~G~~~~~~~~a~Gsg~~~a~~~Le~~~~~~~~ 159 (222)
T 1ryp_M 84 LSINSAARNIQHLL--YGKR--FFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQ 159 (222)
T ss_dssp CCHHHHHHHHHHHH--HTTT--TSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTSCTTC
T ss_pred CCHHHHHHHHHHHH--HhcC--CCCceEEEEEEEEcCCCCeEEEEECCCcCEEecCEEEEcCcHHHHHHHHhcccccccc
Confidence 99999999999998 6543 6899999999999975669999999999999999999999999999999998
Q ss_pred -----------ccCCCCCCHHHHHHHHHhhC
Q psy8777 272 -----------FKKKTNYTGDETIQLAISCL 291 (291)
Q Consensus 272 -----------~~~~~~~t~~eai~l~~~~l 291 (291)
|++ +||+|||++++++||
T Consensus 160 ~~~~~~~~~~~~~~--~~s~eeA~~la~~al 188 (222)
T 1ryp_M 160 YEPGTNGKVKKPLK--YLSVEEVIKLVRDSF 188 (222)
T ss_dssp BCTTSTTCSBCCCC--CCCHHHHHHHHHHHH
T ss_pred cccccccccccCCC--CCCHHHHHHHHHHHH
Confidence 777 999999999999985
No 36
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=100.00 E-value=4.7e-33 Score=245.38 Aligned_cols=169 Identities=18% Similarity=0.270 Sum_probs=151.2
Q ss_pred HHHhhhcCCceeEEEEecccEEEEEeeccCC-CcccCCCCcceEEEecCcEEEEeecccccHHHHHHHHHHHHHHhHhhh
Q psy8777 116 YAFKAINQGGVTSVAVKGVDTAVVATEKKVP-DSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKH 194 (291)
Q Consensus 116 ~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~-~~l~~~~~~~kI~~i~~~~~~~~sG~~~D~~~~~~~~~~e~~~~~~~~ 194 (291)
++..++.+|+ +++|+++++||||++|++.+ +.++..++.+||++|+++++++++|..+|++.+.++++.+++.|++.+
T Consensus 67 ~~~~~v~~Gt-T~vgik~~dGVVlAaD~r~t~G~li~~~~~~KI~~I~d~i~~~~aG~~AD~~~l~~~lr~~~~~y~~~~ 145 (287)
T 3nzj_K 67 DCKIKIAHGT-TTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELRE 145 (287)
T ss_dssp ---------C-CEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhheccCc-eEEEEEECCEEEEEEccccccCceeecCCcceEEEEcCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566778887 99999999999999999998 466777788999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECCCCceEeeeEEEecCCchHHHHHHHHhccC
Q psy8777 195 GYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKK 274 (291)
Q Consensus 195 ~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~ 274 (291)
+++++++.+++.++++++.|++ .|++++++|+|||+++||+||.+||+|++.+++++++|+|+.+++++||+.|++
T Consensus 146 ~~~isv~~la~~ls~~l~~~r~----~p~~v~~lvaG~D~~~gp~Ly~iDp~G~~~~~~~~AiGsgs~~a~~~Le~~y~~ 221 (287)
T 3nzj_K 146 KERISVAAASKILSNLVYQYKG----AGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKW 221 (287)
T ss_dssp SSCCCHHHHHHHHHHHHHHTTT----SCCCEEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHTSCCT
T ss_pred CCCCCHHHHHHHHHHHHHhhcC----CCceEEEEEEEEcCCCCCEEEEECCCceEEEcCeEEEecchHHHHHHHHHhhcC
Confidence 9999999999999999976643 599999999999965789999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhhC
Q psy8777 275 KTNYTGDETIQLAISCL 291 (291)
Q Consensus 275 ~~~~t~~eai~l~~~~l 291 (291)
+||+|||++++++||
T Consensus 222 --dms~eEAi~la~~aL 236 (287)
T 3nzj_K 222 --DLSVEDALYLGKRSI 236 (287)
T ss_dssp --TCCHHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHHH
Confidence 999999999999985
No 37
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=100.00 E-value=6.7e-33 Score=233.51 Aligned_cols=162 Identities=16% Similarity=0.273 Sum_probs=148.5
Q ss_pred eeEEEEecccEEEEEeeccCCC-cccCCCCcceEEEecCcEEEEeecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHH
Q psy8777 126 VTSVAVKGVDTAVVATEKKVPD-SLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLC 204 (291)
Q Consensus 126 ~~~igi~~~~~vvl~~d~~~~~-~l~~~~~~~kI~~i~~~~~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~ 204 (291)
++++|++++++|||++|++.+. .++..++.+||++|+++++++++|..+|++.+.++++.+++.|++.++++++++.++
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 81 (201)
T 1iru_K 2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAA 81 (201)
T ss_dssp CCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEccCcceEEEecCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 3899999999999999999984 677777889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECCCCceEeeeEEEecCCchHHHHHHHHhccCCCCCCHHHHH
Q psy8777 205 NRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKKKTNYTGDETI 284 (291)
Q Consensus 205 ~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~t~~eai 284 (291)
+++++.+. |..+. .+||+++++|+|||+++||+||.+||+|++.+++++++|+|+++++++||+.|++ +||+|||+
T Consensus 82 ~~~~~~l~-~~~~~-~~p~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~--~~s~eea~ 157 (201)
T 1iru_K 82 NFTRRNLA-DCLRS-RTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTP--TISRERAV 157 (201)
T ss_dssp HHHHHHHH-HHHTS-SSCCCEEEEEEEEETTTEEEEEEECTTCCEEECSEEEESHHHHHHHHHHHHHCCT--TCCHHHHH
T ss_pred HHHHHHHH-HHHhc-CCCccEEEEEEEEeCCCCeEEEEECCCcCeEECCEEEECCcHHHHHHHHHhcccC--CCCHHHHH
Confidence 99887652 22232 3799999999999976689999999999999999999999999999999999999 99999999
Q ss_pred HHHHhhC
Q psy8777 285 QLAISCL 291 (291)
Q Consensus 285 ~l~~~~l 291 (291)
+++++||
T Consensus 158 ~l~~~al 164 (201)
T 1iru_K 158 ELLRKCL 164 (201)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999885
No 38
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=100.00 E-value=5.8e-33 Score=234.42 Aligned_cols=159 Identities=18% Similarity=0.286 Sum_probs=149.7
Q ss_pred eeEEEEecccEEEEEeeccCCC-cccCCCCcceEEEecCcEEEEeecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHH
Q psy8777 126 VTSVAVKGVDTAVVATEKKVPD-SLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLC 204 (291)
Q Consensus 126 ~~~igi~~~~~vvl~~d~~~~~-~l~~~~~~~kI~~i~~~~~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~ 204 (291)
|+++|+++++||||++|++.+. .++..++.+||++|+++++++++|..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (204)
T 1iru_L 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAAS 80 (204)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCCEEEcCcccceEEcCCCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 4789999999999999999984 677777889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECCCCceEeeeEEEecCCchHHHHHHHHhccCCCCCCHHHHH
Q psy8777 205 NRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKKKTNYTGDETI 284 (291)
Q Consensus 205 ~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~t~~eai 284 (291)
+.++++++.++ ..|++++++|+|||+ +||+||.+||+|++.+++++|+|+|+++++++||+.|++ +||++||+
T Consensus 81 ~~l~~~~~~~r----~~~~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~--~~s~eea~ 153 (204)
T 1iru_L 81 KLLANMVYQYK----GMGLSMGTMICGWDK-RGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSY--DLEVEQAY 153 (204)
T ss_dssp HHHHHHHHTTT----TSCCCBEEEEEEECS-SSEEEEEEESSSCEEECSEEEESTTHHHHHHHHHTTCCT--TCCHHHHH
T ss_pred HHHHHHHHHhC----CCCeeEEEEEEEEeC-CCCEEEEECCCCcEEEeCCEEEEcCHHHHHHHHhccCCC--CCCHHHHH
Confidence 99999997663 358999999999997 789999999999999999999999999999999999999 99999999
Q ss_pred HHHHhhC
Q psy8777 285 QLAISCL 291 (291)
Q Consensus 285 ~l~~~~l 291 (291)
+++++||
T Consensus 154 ~l~~~al 160 (204)
T 1iru_L 154 DLARRAI 160 (204)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999885
No 39
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=100.00 E-value=7.6e-33 Score=241.19 Aligned_cols=166 Identities=21% Similarity=0.257 Sum_probs=148.4
Q ss_pred HHhhhcCCceeEEEEecccEEEEEeeccCCC-cccCCCCcceEEEecCcEEEEeecccccHHHHHHHHHHHHHHhHhhhC
Q psy8777 117 AFKAINQGGVTSVAVKGVDTAVVATEKKVPD-SLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHG 195 (291)
Q Consensus 117 ~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~-~l~~~~~~~kI~~i~~~~~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~ 195 (291)
..+++.+|+ +++|+++++||||++|++.+. .++..++.+||++|+++++++++|..+|++.+.++++.+++.|++.++
T Consensus 22 ~~kav~~Gt-Tivgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~ 100 (261)
T 3nzj_H 22 QPKATSTGT-TIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTS 100 (261)
T ss_dssp --------C-CEEEEEETTEEEEEEECCEEETTEEEETTCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcccccCc-eEEEEEECCEEEEEEcCCcccCCeeccCCcceEEEEcCCEEEEeccCHHHHHHHHHHHHHHHHHhHHhhC
Confidence 356778887 999999999999999999984 566667889999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECCCCceEeeeEEEecCCchHHHHHHHHhccCC
Q psy8777 196 YSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKKK 275 (291)
Q Consensus 196 ~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~ 275 (291)
++++++.+++.++..+..| .+|++++++|+|||+ .||+||.+||+|++.+++++++|+|++.++++||+.|++
T Consensus 101 ~~~~v~~~a~~l~~~l~~~-----~~~~gv~llvaG~D~-~Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~- 173 (261)
T 3nzj_H 101 REPRVVSALQMLKQHLFKY-----QGHIGAYLIVAGVDP-TGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQ- 173 (261)
T ss_dssp SCCCHHHHHHHHHHHHHHT-----TTCSCEEEEEEEEET-TEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCS-
T ss_pred CCCCHHHHHHHHHHHHHHh-----cCcccEEEEEEEEeC-CCCEEEEECCCccEEecCeEEeccchHHHHHHHHHHhcc-
Confidence 9999999999999988443 369999999999997 689999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhhC
Q psy8777 276 TNYTGDETIQLAISCL 291 (291)
Q Consensus 276 ~~~t~~eai~l~~~~l 291 (291)
+||+|||++++++||
T Consensus 174 -~ms~eEA~~la~~al 188 (261)
T 3nzj_H 174 -DLTKEEAIKLASDAI 188 (261)
T ss_dssp -SCCHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHH
Confidence 999999999999885
No 40
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=100.00 E-value=8e-33 Score=237.71 Aligned_cols=158 Identities=18% Similarity=0.324 Sum_probs=147.9
Q ss_pred eeEEEEecccEEEEEeeccCCCcc-cCCCCcceEEEecCcEEEEeecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHH
Q psy8777 126 VTSVAVKGVDTAVVATEKKVPDSL-VDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLC 204 (291)
Q Consensus 126 ~~~igi~~~~~vvl~~d~~~~~~l-~~~~~~~kI~~i~~~~~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~ 204 (291)
|+++|+++++||||++|++.+.++ +..++.+|||+|+++++++++|..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 TT~vgi~~kdgVVlaaD~r~t~g~~v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 3unf_H 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVT 80 (234)
T ss_dssp CEEEEEECSSEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEECCCcccCCEeccCccccEEEecCCEEEEecccHHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Confidence 489999999999999999998655 4456789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECCCCceEeeeEEEecCCchHHHHHHHHhccCCCCCCHHHHH
Q psy8777 205 NRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKKKTNYTGDETI 284 (291)
Q Consensus 205 ~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~t~~eai 284 (291)
+.++++++.| .+|++++++|+|||+ +||+||.+||+|++.+++++++|+|+.+++++||+.|++ +||+|||+
T Consensus 81 ~~l~~~l~~~-----~~p~~v~llvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~--~ms~eeA~ 152 (234)
T 3unf_H 81 RILRQTLFRY-----QGHVGASLVVGGVDL-NGPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQP--NMTLEAAQ 152 (234)
T ss_dssp HHHHHHHHHT-----TTCSCEEEEEEEEET-TEEEEEEECTTSCEEECSEEEEETTHHHHHHHHHHHCCS--SCCHHHHH
T ss_pred HHHHHHHHhc-----CCCccEEEEEEEEeC-CCCEEEEECCCCCEEeccEEEEcCCchhhHHHHHhccCC--CCCHHHHH
Confidence 9999998654 369999999999997 689999999999999999999999999999999999999 99999999
Q ss_pred HHHHhhC
Q psy8777 285 QLAISCL 291 (291)
Q Consensus 285 ~l~~~~l 291 (291)
+++++||
T Consensus 153 ~la~~al 159 (234)
T 3unf_H 153 ELLVEAI 159 (234)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999885
No 41
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=100.00 E-value=9.3e-33 Score=244.10 Aligned_cols=173 Identities=20% Similarity=0.219 Sum_probs=146.9
Q ss_pred HHHHHhhhcCCceeEEEEecccEEEEEeeccCCCc-ccCCCCcceEEEecCcEEEEeecccccHHHHHHHHHHHHHHhHh
Q psy8777 114 VEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDS-LVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKY 192 (291)
Q Consensus 114 ve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~-l~~~~~~~kI~~i~~~~~~~~sG~~~D~~~~~~~~~~e~~~~~~ 192 (291)
++|+++ +.+|+ +++|+++++||||++|++.+.+ ++..++.+|||+|+++++++++|..+|++.+.++++.+++.|++
T Consensus 48 ~~ya~~-v~~Gt-TiVgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~y~~ 125 (291)
T 2jay_A 48 AGGDAQ-LPHGT-TIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEK 125 (291)
T ss_dssp -----------C-CEEEEEETTEEEEEECCC--------CCCCCCEEEEETTEEEEEESCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccc-ccCCc-EEEEEEECCEEEEEECCCccCCCeeecCCcccEEEeCCcEEEEEcccHHHHHHHHHHHHHHHHHhhh
Confidence 579998 88887 9999999999999999999854 66677889999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCC-----cEEEEECCCCceE--eeeEEEecCCchHHH
Q psy8777 193 KHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEG-----PLIYKTDPAGYYC--SFKAVSVGVKTTEAN 265 (291)
Q Consensus 193 ~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~g-----p~Ly~~d~~G~~~--~~~~~a~G~gs~~~~ 265 (291)
.++.+++++.+++.++++++.++. ...+||+++++|+|||++++ |+||.+||+|++. +++++++|+|+.+++
T Consensus 126 ~~~~~i~v~~la~~la~~l~~~~~-~~~rpf~v~~lvaG~D~~g~~~~~~p~Ly~iDp~G~~~e~~~~~~aiGsgs~~a~ 204 (291)
T 2jay_A 126 LEGVPLTFAGKINRLAIMVRGNLA-AAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLFAK 204 (291)
T ss_dssp HHSSCCCHHHHHHHHHHHHHTCHH-HHHHTCCCEEEEEEECTTCSCSTTCEEEEEECTTSCEEECSSSEEEESTTHHHHH
T ss_pred hcCCCCCHHHHHHHHHHHHHHhhh-hhccccceeEEEEEEeCCCCcCCCCCEEEEECCCCcEEecCCCEEEEecCHHHHH
Confidence 999999999999999999987754 34689999999999997555 9999999999998 889999999999999
Q ss_pred HHHHHhccCCCCCCHHHHHHHHHhhC
Q psy8777 266 SYLEKKFKKKTNYTGDETIQLAISCL 291 (291)
Q Consensus 266 ~~Le~~~~~~~~~t~~eai~l~~~~l 291 (291)
++||+.|++ +||+|||++++++||
T Consensus 205 ~~Le~~~~~--~ms~eEAi~la~~aL 228 (291)
T 2jay_A 205 SSMKKLYSQ--VTDGDSGLRVAVEAL 228 (291)
T ss_dssp HHHHHHGGG--CCSHHHHHHHHHHHH
T ss_pred HHHHHhcCC--CCCHHHHHHHHHHHH
Confidence 999999999 999999999999985
No 42
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=100.00 E-value=1.9e-33 Score=246.35 Aligned_cols=175 Identities=15% Similarity=0.183 Sum_probs=159.3
Q ss_pred HHHHHhhhcCCceeEEEEecccEEEEEeeccCC-CcccCCCCcceEEEecCcEEEEeecccccHHHHHHHHHHHHHHhHh
Q psy8777 114 VEYAFKAINQGGVTSVAVKGVDTAVVATEKKVP-DSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKY 192 (291)
Q Consensus 114 ve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~-~~l~~~~~~~kI~~i~~~~~~~~sG~~~D~~~~~~~~~~e~~~~~~ 192 (291)
.+.+++++.+|+ +++|++++++|||++|++.+ +.++..++.+||++|+++++++++|..+|++.+.++++.+++.|++
T Consensus 31 ~~~~~~av~~Gt-T~vgi~~~dgVVlAaD~r~t~g~~i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~ 109 (266)
T 1g0u_M 31 MVNTQQPIVTGT-SVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAY 109 (266)
T ss_dssp ---CCCCCEEEC-CEEEEEETTEEEEEEECCEEETTEEEECCCCCEEECTTSEEEEEEEEHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhccCcccCc-eEEEEEECCEEEEEEcCCcccCceeecCCcCcEEEcCCCEEEEeccCHHHHHHHHHHHHHHHHHhhh
Confidence 356777888877 99999999999999999998 4667777889999999999999999999999999999999999998
Q ss_pred -----hhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECCCCceEeeeEEEecCCchHHHHH
Q psy8777 193 -----KHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSY 267 (291)
Q Consensus 193 -----~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~ 267 (291)
.++++++++.+++.+++++ |+++...+||+++++|+|+|++++|+||.+||+|++.+++++++|+|+.+++++
T Consensus 110 ~~~~~~~~~~~~v~~la~~l~~~l--y~~r~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~ 187 (266)
T 1g0u_M 110 DNPLADAEEALEPSYIFEYLATVM--YQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPL 187 (266)
T ss_dssp TCTTTTTTTSCCHHHHHHHHHHHH--HHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHTHHHH
T ss_pred ccchhhcCCCCCHHHHHHHHHHHH--HHhccCCCCceEEEEEEEEcCCCCEEEEEECCCCCEEeCCEEEEccCHHHHHHH
Confidence 8999999999999999998 666666899999999999997568999999999999999999999999999999
Q ss_pred HHHhccCCC---CCCHHHHHHHHHhhC
Q psy8777 268 LEKKFKKKT---NYTGDETIQLAISCL 291 (291)
Q Consensus 268 Le~~~~~~~---~~t~~eai~l~~~~l 291 (291)
||+.|++.. +||+|||++++++||
T Consensus 188 Le~~~~~~~~~~~ms~eeA~~la~~al 214 (266)
T 1g0u_M 188 LRKVVDRESDIPKTTVQVAEEAIVNAM 214 (266)
T ss_dssp HTTTCSSGGGGGGCCHHHHHHHHHHHH
T ss_pred HHHhhcccccCCCCCHHHHHHHHHHHH
Confidence 999998843 799999999999985
No 43
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=100.00 E-value=1.3e-32 Score=232.36 Aligned_cols=163 Identities=16% Similarity=0.260 Sum_probs=149.2
Q ss_pred cCCceeEEEEecccEEEEEeeccCCCcccC-CCCcceEEEecCcEEEEeecccccHHHHHHHHHHHHHHhHhhhCCCCCH
Q psy8777 122 NQGGVTSVAVKGVDTAVVATEKKVPDSLVD-PKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPI 200 (291)
Q Consensus 122 ~~g~~~~igi~~~~~vvl~~d~~~~~~l~~-~~~~~kI~~i~~~~~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~ 200 (291)
.+|+ +++|++++++|||++|++.+.++.. .++.+||++|+++++++++|..+|++.+.++++.+++.|++.+++++++
T Consensus 6 ~~Gt-t~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 84 (205)
T 1iru_J 6 YNGG-AVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKP 84 (205)
T ss_dssp SSCC-EEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSSCCCH
T ss_pred CCCC-eEEEEEeCCEEEEEECCccccCCeEeecCCccEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHhhcCCCCCH
Confidence 4566 9999999999999999999865544 3477999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCcceeeeeeeeEEEEeC-CCCcEEEEECCCCceEee-eEEEecCCchHHHHHHHHhccCCCCC
Q psy8777 201 DQLCNRIADISQVYTQNAEMRPLGCSMILISYDE-NEGPLIYKTDPAGYYCSF-KAVSVGVKTTEANSYLEKKFKKKTNY 278 (291)
Q Consensus 201 ~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~-~~gp~Ly~~d~~G~~~~~-~~~a~G~gs~~~~~~Le~~~~~~~~~ 278 (291)
+.+++.+++++ |+++ ..||+++++|+|||+ +++|+||.+||+|++.++ .++++|+|+++++++||+.|++ +|
T Consensus 85 ~~la~~l~~~~--y~~r--~~P~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~--~~ 158 (205)
T 1iru_J 85 YTLMSMVANLL--YEKR--FGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEP--NM 158 (205)
T ss_dssp HHHHHHHHHHH--HTTT--TSCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHCCS--SC
T ss_pred HHHHHHHHHHH--HHhc--CCCceEEEEEEEEeCCCCCeEEEEECCCCCccccCCeeEeeeCHHHHHHHHhcccCC--CC
Confidence 99999999999 7765 359999999999995 478999999999999776 5799999999999999999999 99
Q ss_pred CHHHHHHHHHhhC
Q psy8777 279 TGDETIQLAISCL 291 (291)
Q Consensus 279 t~~eai~l~~~~l 291 (291)
|+|||++++++||
T Consensus 159 s~eea~~l~~~al 171 (205)
T 1iru_J 159 DPDHLFETISQAM 171 (205)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999999885
No 44
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=100.00 E-value=2.7e-32 Score=230.36 Aligned_cols=163 Identities=15% Similarity=0.232 Sum_probs=148.9
Q ss_pred hcCCceeEEEEecccEEEEEeeccCCCcccC-CCCcceEEEecCcEEEEeecccccHHHHHHHHHHHHHHhHhhhCCCCC
Q psy8777 121 INQGGVTSVAVKGVDTAVVATEKKVPDSLVD-PKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMP 199 (291)
Q Consensus 121 ~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~-~~~~~kI~~i~~~~~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s 199 (291)
+.+|+ +++|++++++|||++|++.+.+++. .++.+||++|+ +++++++|..+|++.+.++++.+++.|+++++++++
T Consensus 5 ~~~Gt-t~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 82 (204)
T 1ryp_J 5 SINGG-IVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMFRYKTNLYKLKEERAIE 82 (204)
T ss_dssp GSSCC-EEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEET-TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred CCCCC-eEEEEEeCCEEEEEEcCCcccCCEEeeCCcceEEEeC-CEEEEeeEcHHHHHHHHHHHHHHHHHHhhccCCCCC
Confidence 45566 9999999999999999999865554 34789999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCcceeeeeeeeEEEEeC-CCCcEEEEECCCCceEee-eEEEecCCchHHHHHHHHhccCCCC
Q psy8777 200 IDQLCNRIADISQVYTQNAEMRPLGCSMILISYDE-NEGPLIYKTDPAGYYCSF-KAVSVGVKTTEANSYLEKKFKKKTN 277 (291)
Q Consensus 200 ~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~-~~gp~Ly~~d~~G~~~~~-~~~a~G~gs~~~~~~Le~~~~~~~~ 277 (291)
++.+++.+++++ |+++. .||+++++|+|||+ +++|+||.+||+|++.++ .++++|+|+++++++||+.|++ +
T Consensus 83 v~~la~~l~~~~--y~~~~--~P~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~--~ 156 (204)
T 1ryp_J 83 PETFTQLVSSSL--YERRF--GPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEP--N 156 (204)
T ss_dssp HHHHHHHHHHHH--HTTTT--SCCCEEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHCCS--S
T ss_pred HHHHHHHHHHHH--HHhcC--CCceEEEEEEEEeCCCCceEEEEECCCCCccccCceeEeccCHHHHHHHHhhhcCC--C
Confidence 999999999999 77653 49999999999996 478999999999999776 6799999999999999999999 9
Q ss_pred CCHHHHHHHHHhhC
Q psy8777 278 YTGDETIQLAISCL 291 (291)
Q Consensus 278 ~t~~eai~l~~~~l 291 (291)
||+|||++++++||
T Consensus 157 ~s~eea~~l~~~al 170 (204)
T 1ryp_J 157 LEPEDLFETISQAL 170 (204)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 99999999999885
No 45
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=100.00 E-value=3.3e-32 Score=232.61 Aligned_cols=158 Identities=20% Similarity=0.243 Sum_probs=147.7
Q ss_pred eeEEEEecccEEEEEeeccCCCcc-cCCCCcceEEEecCcEEEEeecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHH
Q psy8777 126 VTSVAVKGVDTAVVATEKKVPDSL-VDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLC 204 (291)
Q Consensus 126 ~~~igi~~~~~vvl~~d~~~~~~l-~~~~~~~kI~~i~~~~~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~ 204 (291)
|+++|+++++||||++|++.+.++ +..++.+||++|+++++++++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~t~g~~~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (222)
T 1ryp_I 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSAL 80 (222)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEEcCCcccCCeeecCCcccEEEecCCEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 478999999999999999998554 4456779999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECCCCceEeeeEEEecCCchHHHHHHHHhccCCCCCCHHHHH
Q psy8777 205 NRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKKKTNYTGDETI 284 (291)
Q Consensus 205 ~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~t~~eai 284 (291)
+.+++.++.| .+|++++++|+|+|+ +||+||.+||+|++.+++++|+|+|+.+++++||+.|++ +||+|||+
T Consensus 81 ~~l~~~l~~~-----~~p~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~--~ms~eeA~ 152 (222)
T 1ryp_I 81 QMLKQHLFKY-----QGHIGAYLIVAGVDP-TGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQ--DLTKEEAI 152 (222)
T ss_dssp HHHHHHHHHT-----TTCSCEEEEEEEEET-TEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCS--SCCHHHHH
T ss_pred HHHHHHHhhc-----CCCCCeeEEEEEEeC-CCCEEEEECCCCCEEecCEEEECCCHHHHHHHHHhhCCC--CcCHHHHH
Confidence 9999998544 379999999999997 689999999999999999999999999999999999999 99999999
Q ss_pred HHHHhhC
Q psy8777 285 QLAISCL 291 (291)
Q Consensus 285 ~l~~~~l 291 (291)
+++++||
T Consensus 153 ~la~~al 159 (222)
T 1ryp_I 153 KLASDAI 159 (222)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999985
No 46
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=99.98 E-value=1.6e-31 Score=229.93 Aligned_cols=158 Identities=19% Similarity=0.287 Sum_probs=147.2
Q ss_pred eeEEEEecccEEEEEeeccCCCccc-CCCCcceEEEecCcEEEEeecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHH
Q psy8777 126 VTSVAVKGVDTAVVATEKKVPDSLV-DPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLC 204 (291)
Q Consensus 126 ~~~igi~~~~~vvl~~d~~~~~~l~-~~~~~~kI~~i~~~~~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~ 204 (291)
++++|+++++||||++|++.+.+++ ..++.+||++|+++++++++|..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 TTivgi~~~dgVVlaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 1iru_I 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTAN 80 (234)
T ss_dssp CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCceeccCcccceEEecCCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 4789999999999999999986554 345779999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECCCCceEeeeEEEecCCchHHHHHHHHhccCCCCCCHHHHH
Q psy8777 205 NRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKKKTNYTGDETI 284 (291)
Q Consensus 205 ~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~t~~eai 284 (291)
+.+++.++.| .+|++++++|+|||+ +||+||.+||+|++.+++++++|+|++.++++||+.|++ +||++||+
T Consensus 81 ~~l~~~l~~~-----~~~~~v~llvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~--~ms~eeA~ 152 (234)
T 1iru_I 81 RMLKQMLFRY-----RGYIGAALVLGGVDV-TGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRP--DMEEEEAK 152 (234)
T ss_dssp HHHHHHHHHT-----TTCSCEEEEEEEECS-SCEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHSCCT--TCCHHHHH
T ss_pred HHHHHHHHhc-----CCCCceeEEEEEEcC-CCCEEEEECCCCCEEecCEEEECCchHHHHHHHHHhccC--CCCHHHHH
Confidence 9999988554 259999999999997 689999999999999999999999999999999999999 99999999
Q ss_pred HHHHhhC
Q psy8777 285 QLAISCL 291 (291)
Q Consensus 285 ~l~~~~l 291 (291)
+++++||
T Consensus 153 ~la~~al 159 (234)
T 1iru_I 153 NLVSEAI 159 (234)
T ss_dssp THHHHHH
T ss_pred HHHHHHH
Confidence 9999885
No 47
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=99.97 E-value=3e-31 Score=223.07 Aligned_cols=157 Identities=20% Similarity=0.259 Sum_probs=144.7
Q ss_pred eeEEEEecccEEEEEeeccCCCc-ccCCCCcceEEEecCcEEEEeecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHH
Q psy8777 126 VTSVAVKGVDTAVVATEKKVPDS-LVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLC 204 (291)
Q Consensus 126 ~~~igi~~~~~vvl~~d~~~~~~-l~~~~~~~kI~~i~~~~~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~ 204 (291)
|+++|+++++||||++|++.+.+ ++..++.+|||+|+++++++++|..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (199)
T 3unf_N 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAA 80 (199)
T ss_dssp CEEEEEECSSCEEEEECCCEEETTEEEESSCCCEEEEETTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred CeEEEEEeCCeEEEEECCcccCCceeEccccCceEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 48999999999999999999854 67777889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECCCCceEeee-EEEecCCchHHHHHHHHhccCCCCCCHHHH
Q psy8777 205 NRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFK-AVSVGVKTTEANSYLEKKFKKKTNYTGDET 283 (291)
Q Consensus 205 ~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~~G~~~~~~-~~a~G~gs~~~~~~Le~~~~~~~~~t~~ea 283 (291)
+.++++++.+ .+||+++++|+|||++++|+||. |+|++..+. ++++|+|+++++++||+.|++ +||+|||
T Consensus 81 ~~l~~~l~~~-----~~p~~v~~lvaG~D~~~~p~ly~--p~G~~~~~~~~~~~Gsgs~~a~~~Le~~~~~--~ms~eea 151 (199)
T 3unf_N 81 NVVKNISYKY-----REDLLAHLIVAGWDQREGGQVYG--TMGGMLIRQPFTIGGSGSSYIYGYVDAAYKP--GMTPEEC 151 (199)
T ss_dssp HHHHHHHHHT-----TTTCCCCEEEEEEETTTEEEEEE--CGGGCCEECSEEEEEGGGGGGHHHHHHHCCS--SCCHHHH
T ss_pred HHHHHHHHhc-----CCCceEEEEEEEEeCCCCcEEEE--ECCCceecCCEEEEccCHHHHHHHHHhhcCC--CCCHHHH
Confidence 9999999644 36999999999999867899999 999976664 667799999999999999999 9999999
Q ss_pred HHHHHhhC
Q psy8777 284 IQLAISCL 291 (291)
Q Consensus 284 i~l~~~~l 291 (291)
++++++||
T Consensus 152 ~~la~~al 159 (199)
T 3unf_N 152 RRFTTNAI 159 (199)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999985
No 48
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=99.94 E-value=3.6e-26 Score=187.52 Aligned_cols=146 Identities=15% Similarity=0.155 Sum_probs=123.3
Q ss_pred eeEEEEecccEEEEEeeccCC-CcccCCCCcceEEEe-cCcEEEEeecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHH
Q psy8777 126 VTSVAVKGVDTAVVATEKKVP-DSLVDPKTVTNLYSL-TPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQL 203 (291)
Q Consensus 126 ~~~igi~~~~~vvl~~d~~~~-~~l~~~~~~~kI~~i-~~~~~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l 203 (291)
|+++|++++++|||++|++.+ +.++.+++.+|||+| +++++++++|..+|++.+.++++.+++.|+++ .++.+
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~-----~~~~~ 75 (171)
T 1m4y_A 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGN-----LTKAA 75 (171)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTC-----HHHHH
T ss_pred CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEeCCCCEEEEeCccHHHHHHHHHHHHHHHHHhccc-----HHHHH
Confidence 488999999999999999998 467777788999999 99999999999999999999999999987743 13333
Q ss_pred HHHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECCCCceEeee--EEEecCCchHHHHHHHHhcc-CCCCCCH
Q psy8777 204 CNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFK--AVSVGVKTTEANSYLEKKFK-KKTNYTG 280 (291)
Q Consensus 204 ~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~~G~~~~~~--~~a~G~gs~~~~~~Le~~~~-~~~~~t~ 280 (291)
++ +.+.+.++...+|+++.++++ | ||+||.+||+|++.+++ +.++|+|+++++++||+.|+ + +||.
T Consensus 76 ~~----l~~~~~~~~~~~~~~~~~lv~--D---~p~Ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~--~ms~ 144 (171)
T 1m4y_A 76 VE----LAKDWRTDRVLRRLEALLLVA--D---KENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALLRNT--DLSA 144 (171)
T ss_dssp HH----HHHHHHHCTTGGGCCCEEEEE--C---SSCEEEECTTSCEECCSSSEEEESTTHHHHHHHHHHHHHHC--CCCH
T ss_pred HH----HHHHHHHhCCCCceEEEEEEE--c---CCEEEEECCCCCEEecCCCEEEECCcHHHHHHHHHHhcccC--CCCH
Confidence 33 333444555567899988877 4 79999999999999988 99999999999999999999 8 9998
Q ss_pred HHHHHHH
Q psy8777 281 DETIQLA 287 (291)
Q Consensus 281 ~eai~l~ 287 (291)
+|++.-+
T Consensus 145 ~~l~~~a 151 (171)
T 1m4y_A 145 REIVEKA 151 (171)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6654443
No 49
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=99.94 E-value=7.6e-26 Score=186.06 Aligned_cols=147 Identities=15% Similarity=0.122 Sum_probs=123.8
Q ss_pred eeEEEEecccEEEEEeeccCCC-cccCCCCcceEEEe-cCcEEEEeecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHH
Q psy8777 126 VTSVAVKGVDTAVVATEKKVPD-SLVDPKTVTNLYSL-TPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQL 203 (291)
Q Consensus 126 ~~~igi~~~~~vvl~~d~~~~~-~l~~~~~~~kI~~i-~~~~~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l 203 (291)
++++|++++++|||++|++.+. .++.+++.+||++| +++++++++|..+|++.+.++++.+++.|++ ++
T Consensus 1 tT~vgi~~~dgVvlaaD~r~t~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~------~~--- 71 (174)
T 1g3k_A 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQG------HL--- 71 (174)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTT------CH---
T ss_pred CeEEEEEECCEEEEEECCCCccCCeeEeCCCCcEEEECCCCEEEEeCccHHHHHHHHHHHHHHHHHhcC------cH---
Confidence 4789999999999999999984 46777788999999 9999999999999999999999999998874 33
Q ss_pred HHHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECCCCceEeee---EEEecCCchHHHHHHHHhcc-CCCCCC
Q psy8777 204 CNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFK---AVSVGVKTTEANSYLEKKFK-KKTNYT 279 (291)
Q Consensus 204 ~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~~G~~~~~~---~~a~G~gs~~~~~~Le~~~~-~~~~~t 279 (291)
.+.+..+.+.++++...+|++ ++++|+| +|+||.+||+|++.+++ ++|+|+|+++++++||+.|+ + +||
T Consensus 72 ~~~~~~l~~~~~~~~~~r~~~--~~l~g~d---~p~Ly~~d~~G~~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~--~mt 144 (174)
T 1g3k_A 72 LKSAVELAKDWRTDRALRKLE--AMLIVAD---EKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVENT--ELS 144 (174)
T ss_dssp HHHHHHHHHHHHHSTTGGGCC--CEEEEEC---SSCEEEEETTTEEECCCTTCEEEESTTHHHHHHHHHHHHHHC--CCC
T ss_pred HHHHHHHHHHHHhccCcCcce--EEEEEEC---CCEEEEEcCCCcEEecCCCcEEEEcccHHHHHHHHHHhcccC--CCC
Confidence 334444445555665667764 6778886 69999999999999988 99999999999999999999 8 999
Q ss_pred HHHHHHHHH
Q psy8777 280 GDETIQLAI 288 (291)
Q Consensus 280 ~~eai~l~~ 288 (291)
.+|.+..++
T Consensus 145 ~~~l~~~al 153 (174)
T 1g3k_A 145 AHEIVEKSL 153 (174)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776544443
No 50
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=99.93 E-value=1.1e-25 Score=185.91 Aligned_cols=151 Identities=15% Similarity=0.154 Sum_probs=127.7
Q ss_pred CCceeEEEEecccEEEEEeeccCCC-cc-cCCCCcceEEEe-cCcEEEEeecccccHHHHHHHHHHHHHHhHhhhCCCCC
Q psy8777 123 QGGVTSVAVKGVDTAVVATEKKVPD-SL-VDPKTVTNLYSL-TPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMP 199 (291)
Q Consensus 123 ~g~~~~igi~~~~~vvl~~d~~~~~-~l-~~~~~~~kI~~i-~~~~~~~~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s 199 (291)
+|+ +++|++++|+|||++|++.+. .+ +.+++.+||++| +++++++++|..+|++.+.++++.+++.|+ +
T Consensus 4 ~Gt-Tivgi~~~dgVvlaaD~r~t~g~~~i~~~~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~y~---g---- 75 (180)
T 2z3b_A 4 HAT-TIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYN---G---- 75 (180)
T ss_dssp CCC-CEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTT---T----
T ss_pred CCe-EEEEEEECCEEEEEECCCccCCCceEecCCCCcEEEECCCCEEEEeCchHHHHHHHHHHHHHHHHHhc---C----
Confidence 355 999999999999999999984 56 777888999999 999999999999999999999999998887 2
Q ss_pred HHHHHHHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECCCCceEee--eEEEecCCchHHHHHHHHhccCCC-
Q psy8777 200 IDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSF--KAVSVGVKTTEANSYLEKKFKKKT- 276 (291)
Q Consensus 200 ~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~~G~~~~~--~~~a~G~gs~~~~~~Le~~~~~~~- 276 (291)
.+.+.+..+.+.++++...||+++.++|+ | +|+||.+||+|++.++ +++|+|+|+++++++||+.|++..
T Consensus 76 --~~~~~~~~l~~~~~~~~~~rp~~~~~lva--d---~p~ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~~ 148 (180)
T 2z3b_A 76 --NLKRAAVELAKEWRSDKVLRKLEAMLIVM--N---QDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHAGE 148 (180)
T ss_dssp --CHHHHHHHHHHHHHHCTTGGGCCCCEEEE--C---SSCEEEECTTCCEECCSSSEEEESTTHHHHHHHHHHHHHHHGG
T ss_pred --ChHHHHHHHHHHHHhhhCcCcceEEEEEE--c---CCeEEEECCCCcEEEeCCCEEEECCCHHHHHHHHHHhhhccCC
Confidence 23334444555566677789999999998 3 6999999999999984 999999999999999999998621
Q ss_pred CCCHHHHHHHHH
Q psy8777 277 NYTGDETIQLAI 288 (291)
Q Consensus 277 ~~t~~eai~l~~ 288 (291)
+||.||+++-++
T Consensus 149 ~mt~eel~~~al 160 (180)
T 2z3b_A 149 SMSASEIARAAL 160 (180)
T ss_dssp GCCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 599999665443
No 51
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=99.93 E-value=4.6e-26 Score=198.64 Aligned_cols=193 Identities=13% Similarity=0.051 Sum_probs=126.4
Q ss_pred eeCCCCcch-hhhHHHHHHhcCCceEEEEecCCeEEEEEeccCCCCccCCCCcceeEeecCcEEEEEeccccchhhhhhh
Q psy8777 15 IFSPEGRLY-QVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQR 93 (291)
Q Consensus 15 ~fsp~g~~~-q~eya~~av~~g~~t~vgi~~~~~vv~a~~~~~~~~l~~~~~~~ki~~i~~~~~~~~~G~~~D~~~~~~~ 93 (291)
-|||||++. |||||+|||++|+ |+|||+++||||||+|+| +++.+|||+|++||+|++||+.+|+|.+++.
T Consensus 6 ~~sPe~~~~~qvEYA~~av~~Gt-t~vgi~~~dgVVlaaD~r-------s~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~ 77 (259)
T 1q5q_A 6 YASAEQIMRDRSELARKGIARGR-SVVVLTFRDGVLFVAENP-------STALHKVSELYDRLGFAAVGKYNEFENLRRA 77 (259)
T ss_dssp ---CHHHHHHHHHHHHHHHHTSC-CEEEEECSSEEEEEECCS-------CSSSCSEEEEETTEEEEEEECHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhcCC-cEEEEEeCCEEEEEEecC-------CCCcCcEEEeCCCEEEEEccCHHHHHHHHHH
Confidence 489999995 9999999999995 999999999999999999 2567999999999999999999999999998
Q ss_pred hcccccccccccCCCCchhhHHHHHhhhcC----CceeEEEEecccEEEEEeeccCCCcccC--C-CCcceEEEecCcEE
Q psy8777 94 ARAGFDRHITIFSPEGRLYQVEYAFKAINQ----GGVTSVAVKGVDTAVVATEKKVPDSLVD--P-KTVTNLYSLTPTVG 166 (291)
Q Consensus 94 ~~~~yd~~~~~~sp~grl~qve~~~~~~~~----g~~~~igi~~~~~vvl~~d~~~~~~l~~--~-~~~~kI~~i~~~~~ 166 (291)
++.+...+.-.++ ++-..++.+.+.+.+ .. + -+.++....+|.+. ++ + ..+|+||.+||.|.
T Consensus 78 ~~~~~~~~~~~~~--~~~i~v~~la~~l~~~l~q~y-t-~~~rP~~v~~lvaG-------~D~~~~~~gp~Ly~idp~G~ 146 (259)
T 1q5q_A 78 GIVHADMRGYSYD--RRDVTGRSLANAYAQTLGTIF-T-EQPKPYEVEICVAE-------VGRVGSPKAPQLYRITYDGS 146 (259)
T ss_dssp HHHHHHHHHHHSC--GGGCCHHHHHHHHHHHHHHHH-H-HSSSCCCEEEEEEE-------CCCSSCCCCCEEEEEETTSC
T ss_pred HHHHHHHHHHHcC--CcCCCHHHHHHHHHHHHHHHh-c-cCCCCceEEEEEEE-------EcccCCCCCCEEEEECCCCc
Confidence 8744332211111 111111111111111 11 1 13456666666665 55 2 57899999999998
Q ss_pred EE-e-ecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHHHhh-----hcCcceeeeeeeeEEEE
Q psy8777 167 CV-M-TGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYT-----QNAEMRPLGCSMILISY 232 (291)
Q Consensus 167 ~~-~-sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~~~l~~~~~~~~-----~~~~~~p~~~~~li~G~ 232 (291)
+. - ...+.+..+...+..++. .+..+|+.+++++.+.+.+.... .+. ..+..+++.++..
T Consensus 147 ~~~~~~~~aiG~gs~~a~~~Le~-----~~~~~ms~eea~~la~~al~~~~~~~~~~rd-~sg~~iev~vi~~ 213 (259)
T 1q5q_A 147 IVDEQHFVVMGGTTEPIATAMRE-----SYRADLDLEAAVGIAVNALRQGGAGEGEKRN-VDVASLEVAVLDQ 213 (259)
T ss_dssp EEEESSEEEESSSHHHHHHHHHH-----HCCTTCCHHHHHHHHHHHHTTCC---------CCSSCSEEEEEET
T ss_pred eeeCCCEEEECCChHHHHHHHHh-----hccCCCCHHHHHHHHHHHHHHHhhccccccc-CCCCcEEEEEEEC
Confidence 65 2 233444555555555554 34568999999997766663322 111 2445566666643
No 52
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=99.90 E-value=1.3e-23 Score=181.49 Aligned_cols=189 Identities=13% Similarity=0.106 Sum_probs=125.8
Q ss_pred CCCCcch-hhhHHHHHHhcCCceEEEEecCCeEEEEEeccCCCCccCCCCcceeEeecCcEEEEEeccccchhhhhhhhc
Q psy8777 17 SPEGRLY-QVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRAR 95 (291)
Q Consensus 17 sp~g~~~-q~eya~~av~~g~~t~vgi~~~~~vv~a~~~~~~~~l~~~~~~~ki~~i~~~~~~~~~G~~~D~~~~~~~~~ 95 (291)
|||.-.- ++|||+|||++|+ |+|||+++||||||+||| +++.+|||+|++||+|+++|+.+|+|.|.+.++
T Consensus 8 ~p~~~~~~r~EYA~~av~~Gt-T~vgi~~kdgVVlaadkr-------~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~ 79 (248)
T 3mi0_A 8 SPEQAMRERSELARKGIARAK-SVVALAYAGGVLFVAENP-------SRSLQKISELYDRVGFAAAGKFNEFDNLRRGGI 79 (248)
T ss_dssp CHHHHHHHHHHHHHHHHHTSC-CEEEEEETTEEEEEEECC-------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHH
T ss_pred CHHHhcccchHHHHHHHhCCC-cEEEEEeCCEEEEEEeCC-------CCCCCCeEEECCCEEEEEccCHHHHHHHHHHHH
Confidence 4443333 5899999999995 999999999999999999 346799999999999999999999999988877
Q ss_pred cc-------cc-ccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCC---CCcceEEEecCc
Q psy8777 96 AG-------FD-RHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDP---KTVTNLYSLTPT 164 (291)
Q Consensus 96 ~~-------yd-~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~---~~~~kI~~i~~~ 164 (291)
.. |+ .++++ ..+.+. ......+..+. +.+|....+|.+. +++ ..+|+||.+||+
T Consensus 80 ~~~~l~~~~~~~~~i~v----~~la~~--l~~~l~q~yt~--~~rP~gv~~liaG-------~D~~~~~~gp~Ly~~Dp~ 144 (248)
T 3mi0_A 80 QFADTRGYAYDRRDVTG----RQLANV--YAQTLGTIFTE--QAKPYEVELCVAE-------VAHYGETKRPELYRITYD 144 (248)
T ss_dssp HHHHHHHHHSCGGGCCH----HHHHHH--HHHHHHHHHHH--SSSCCCEEEEEEE-------CCCTTCCCCCEEEEECTT
T ss_pred HHHHHHHHhcCCCCCCH----HHHHHH--HHHHHHHHhcc--CCCCceEEEEEEE-------EcCCCCCCCCEEEEECCC
Confidence 43 33 22222 112110 00011111111 3456666666665 554 378999999999
Q ss_pred EEEE--eecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHHHhhh------cCcceeeeeeeeEEEEe
Q psy8777 165 VGCV--MTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQ------NAEMRPLGCSMILISYD 233 (291)
Q Consensus 165 ~~~~--~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~------~~~~~p~~~~~li~G~d 233 (291)
|.+. ....+.+.++...+..+|. .|+.+|+.+++++.+.+.+..... +....+-++++.|+..|
T Consensus 145 G~~~~e~~~~a~Gsgs~~a~~~Le~-----~y~~~mt~eeai~la~~aL~~~~~~~~~~~~~~~~~~~iev~vv~~~ 216 (248)
T 3mi0_A 145 GSIADEPHFVVMGGTTEPIANALKE-----SYAENASLTDALRIAVAALRAGSADTSGGDQPTLGVASLEVAVLDAN 216 (248)
T ss_dssp SCEEEESSEEEESSCHHHHHHHHHH-----HCCTTCCHHHHHHHHHHHHHHC------------CCTTEEEEEEETT
T ss_pred eEEeecccEEEECccHHHHHHHHHh-----hcCCCCCHHHHHHHHHHHHHHHHhhcccCcccccCCCcEEEEEEECC
Confidence 9765 3444455666666665555 355689999999966666644431 12355667777777543
No 53
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=99.81 E-value=3.8e-20 Score=163.37 Aligned_cols=184 Identities=13% Similarity=0.056 Sum_probs=98.3
Q ss_pred CCccceeeeeCCCCcc-----hh--hhHHHHHHhcCCceEEEEecCCeEEEEEeccCCCC-ccCCCCcceeEeecCcEEE
Q psy8777 7 AGFDRHITIFSPEGRL-----YQ--VEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDS-LVDPKTVTNLYSLTPTVGC 78 (291)
Q Consensus 7 ~~yd~~~~~fsp~g~~-----~q--~eya~~av~~g~~t~vgi~~~~~vv~a~~~~~~~~-l~~~~~~~ki~~i~~~~~~ 78 (291)
+.|+.......||.-. +| +|||++ +++| +|+|||+++||||||+|+|.+.+ ++.+++.+|||+|++|++|
T Consensus 23 ~~f~~~~~~~~~~~l~~~~~~~~~~~~ya~~-v~~G-tTiVgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~i~d~i~~ 100 (291)
T 2jay_A 23 SSFTDFLRRQAPELLPASISGGAPLAGGDAQ-LPHG-TTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTAT 100 (291)
T ss_dssp -------------------------------------CCEEEEEETTEEEEEECCC--------CCCCCCEEEEETTEEE
T ss_pred ccHHHHhhhcChhhccccccccCcCcccccc-ccCC-cEEEEEEECCEEEEEECCCccCCCeeecCCcccEEEeCCcEEE
Confidence 4566666667776432 22 799999 9998 59999999999999999999886 6777788999999999999
Q ss_pred EEeccccchhhhhhhhcccc-------cccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccC
Q psy8777 79 VMTGMQADSRYQVQRARAGF-------DRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVD 151 (291)
Q Consensus 79 ~~~G~~~D~~~~~~~~~~~y-------d~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~ 151 (291)
++||+.+|+|.+++.++.+. +..+++.....++.++-|... . -++++....+|.+. ++
T Consensus 101 ~~aG~~aD~~~l~~~lr~~~~~y~~~~~~~i~v~~la~~la~~l~~~~-------~-~~~rpf~v~~lvaG-------~D 165 (291)
T 2jay_A 101 GIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNL-------A-AAMQGLLALPLLAG-------YD 165 (291)
T ss_dssp EEESCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTCH-------H-HHHHTCCCEEEEEE-------EC
T ss_pred EEcccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhh-------h-hhccccceeEEEEE-------Ee
Confidence 99999999999999988442 222222111112221211111 1 12345555455443 44
Q ss_pred CCCc-----ceEEEecCcEEEE---eecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHH
Q psy8777 152 PKTV-----TNLYSLTPTVGCV---MTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQ 212 (291)
Q Consensus 152 ~~~~-----~kI~~i~~~~~~~---~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~~~l~~~~~ 212 (291)
+..+ |+||.+||+|.+. ....+.++++...+..++.. ++.+|+.+++++.+.+.+.
T Consensus 166 ~~g~~~~~~p~Ly~iDp~G~~~e~~~~~~aiGsgs~~a~~~Le~~-----~~~~ms~eEAi~la~~aL~ 229 (291)
T 2jay_A 166 IHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKL-----YSQVTDGDSGLRVAVEALY 229 (291)
T ss_dssp TTCSCSTTCEEEEEECTTSCEEECSSSEEEESTTHHHHHHHHHHH-----GGGCCSHHHHHHHHHHHHH
T ss_pred CCCCcCCCCCEEEEECCCCcEEecCCCEEEEecCHHHHHHHHHHh-----cCCCCCHHHHHHHHHHHHH
Confidence 3334 8999999999544 22223345555555555543 3348999999986666553
No 54
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=99.81 E-value=9.9e-20 Score=158.40 Aligned_cols=186 Identities=20% Similarity=0.182 Sum_probs=112.4
Q ss_pred HHHHHhcCCceEEEEecCCeEEEEEeccCCCC-ccCCCCcceeEeecCcEEEEEeccccchhhhhhhhcccccccccccC
Q psy8777 28 AFKAINQGGVTSVAVKGVDTAVVATEKKVPDS-LVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARAGFDRHITIFS 106 (291)
Q Consensus 28 a~~av~~g~~t~vgi~~~~~vv~a~~~~~~~~-l~~~~~~~ki~~i~~~~~~~~~G~~~D~~~~~~~~~~~yd~~~~~~s 106 (291)
++|||++|+ |+|||+++||||||+|+|.+.+ ++.+++.+|||+|++|++|++||+.+|+|.+++.++.+...+-..+.
T Consensus 22 ~~kav~~Gt-Tivgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~ 100 (261)
T 3nzj_H 22 QPKATSTGT-TIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTS 100 (261)
T ss_dssp --------C-CEEEEEETTEEEEEEECCEEETTEEEETTCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcccccCc-eEEEEEECCEEEEEEcCCcccCCeeccCCcceEEEEcCCEEEEeccCHHHHHHHHHHHHHHHHHhHHhhC
Confidence 479999995 9999999999999999998874 56677789999999999999999999999999999854332211111
Q ss_pred CCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEE-eecccccHHHHHHHHHH
Q psy8777 107 PEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCV-MTGMQADSRYQVQRARY 185 (291)
Q Consensus 107 p~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~-~sG~~~D~~~~~~~~~~ 185 (291)
..-+ ++.+.+.+.+.-... .++.+..+|.+. +++ ++|+||.+||+|.+. ....+.+..+...+..+
T Consensus 101 ~~~~---v~~~a~~l~~~l~~~--~~~~gv~llvaG-------~D~-~Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~L 167 (261)
T 3nzj_H 101 REPR---VVSALQMLKQHLFKY--QGHIGAYLIVAG-------VDP-TGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVL 167 (261)
T ss_dssp SCCC---HHHHHHHHHHHHHHT--TTCSCEEEEEEE-------EET-TEEEEEEECTTSCEEECSEEEESTTHHHHHHHH
T ss_pred CCCC---HHHHHHHHHHHHHHh--cCcccEEEEEEE-------EeC-CCCEEEEECCCccEEecCeEEeccchHHHHHHH
Confidence 1111 111111111100000 012333333333 443 679999999999763 22223335555555555
Q ss_pred HHHHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEEE
Q psy8777 186 EAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISY 232 (291)
Q Consensus 186 e~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G~ 232 (291)
|. .+..+|+.+++++.+.+.+.....+.....-.+++.++..
T Consensus 168 e~-----~~~~~ms~eEA~~la~~al~~a~~rD~~sg~~iev~vI~k 209 (261)
T 3nzj_H 168 ES-----HWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEI 209 (261)
T ss_dssp HH-----HCCSSCCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEEET
T ss_pred HH-----HhccCCCHHHHHHHHHHHHHHHHhhCCCCCCcEEEEEEEC
Confidence 54 3456999999998666665444343333455677777643
No 55
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=99.80 E-value=1.8e-19 Score=153.06 Aligned_cols=176 Identities=16% Similarity=0.190 Sum_probs=112.7
Q ss_pred HHHhcCCceEEEEecCCeEEEEEeccCCC-CccCCCCcceeEeecCcEEEEEeccccchhhhhhhhccc-------cccc
Q psy8777 30 KAINQGGVTSVAVKGVDTAVVATEKKVPD-SLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARAG-------FDRH 101 (291)
Q Consensus 30 ~av~~g~~t~vgi~~~~~vv~a~~~~~~~-~l~~~~~~~ki~~i~~~~~~~~~G~~~D~~~~~~~~~~~-------yd~~ 101 (291)
.++++| +|+|||+++||||||+|+|.+. ++..+++.+||++|++|++|++||+.+|+|.+++.++.+ |+.+
T Consensus 3 ~~~~~G-tt~vgi~~~dgVvlaaD~r~~~g~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (217)
T 1yar_H 3 QTLETG-TTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVN 81 (217)
T ss_dssp -------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCC-ccEEEEEeCCEEEEEEcCCCCCCCEEecCccCCeEEeCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 478888 4999999999999999999887 577788889999999999999999999999999999843 2222
Q ss_pred ccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEE-eecccccHHHHH
Q psy8777 102 ITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCV-MTGMQADSRYQV 180 (291)
Q Consensus 102 ~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~-~sG~~~D~~~~~ 180 (291)
+++......+.++-|.. . .+|....++.+. ++ ++|+||.+||.|.+. ....+.+.++..
T Consensus 82 ~~v~~la~~l~~~~~~~--------r---~rp~~v~~lvaG-------~D--~gp~Ly~idp~G~~~~~~~~aiGsgs~~ 141 (217)
T 1yar_H 82 MPIEAVATLLSNMLNQV--------K---YMPYMVQLLVGG-------ID--TAPHVFSIDAAGGSVEDIYASTGSGSPF 141 (217)
T ss_dssp CCHHHHHHHHHHHHHHT--------T---TSCCCEEEEEEE-------ES--SSEEEEEECTTCCEEEESEEEESTTHHH
T ss_pred CCHHHHHHHHHHHHHhc--------C---CCCceEEEEEEE-------EC--CCCEEEEECCCCCeEecCEEEEcCCHHH
Confidence 22211111111111111 1 245565666655 55 679999999999753 222233355555
Q ss_pred HHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEE
Q psy8777 181 QRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILIS 231 (291)
Q Consensus 181 ~~~~~e~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G 231 (291)
.+..++. .++.+++.+++.+.+.+.+.....+....+-.+++.++.
T Consensus 142 a~~~Le~-----~~~~~~s~eea~~la~~al~~~~~rd~~s~~~i~v~vi~ 187 (217)
T 1yar_H 142 VYGVLES-----QYSEKMTVDEGVDLVIRAISAAKQRDSASGGMIDVAVIT 187 (217)
T ss_dssp HHHHHHH-----HCCTTCCHHHHHHHHHHHHHHHHHHCTTCCSCCEEEEEE
T ss_pred HHHHHHh-----hcccCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEE
Confidence 5555554 345589999999866555544433333334455665553
No 56
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=99.80 E-value=4.2e-20 Score=155.65 Aligned_cols=180 Identities=11% Similarity=0.123 Sum_probs=114.8
Q ss_pred HHHHhcCCceEEEEecCCeEEEEEeccCCCC-ccCCCCcceeEeecCcEEEEEeccccchhhhhhhhcccccccccccCC
Q psy8777 29 FKAINQGGVTSVAVKGVDTAVVATEKKVPDS-LVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARAGFDRHITIFSP 107 (291)
Q Consensus 29 ~~av~~g~~t~vgi~~~~~vv~a~~~~~~~~-l~~~~~~~ki~~i~~~~~~~~~G~~~D~~~~~~~~~~~yd~~~~~~sp 107 (291)
+||+++| +|+|||+++||||||+|+|.+.+ +..+++.+||++|++|++|++||+.+|+|.+++.++.+....-..+
T Consensus 3 ~~av~~G-tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~-- 79 (205)
T 1ryp_H 3 KGEVSLG-ASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQY-- 79 (205)
T ss_dssp TTCCBCC-CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CCCCcCC-ceEEEEEeCCEEEEEEcCCcccCcEEEcCCcCceEEcCCCEEEEccCCHHHHHHHHHHHHHHHHHHHHHh--
Confidence 5889998 59999999999999999999887 7777778999999999999999999999999999985432221111
Q ss_pred CCchhhHHHHHhhhc---CCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEE-eecccccHHHHHHHH
Q psy8777 108 EGRLYQVEYAFKAIN---QGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCV-MTGMQADSRYQVQRA 183 (291)
Q Consensus 108 ~grl~qve~~~~~~~---~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~-~sG~~~D~~~~~~~~ 183 (291)
++ ..++...+.+. +..+.. ....++.+. +++..+|+||.+||.|.+. ....+.+..+...+.
T Consensus 80 -~~-~~v~~la~~l~~~~~~~~~~-----~~~~~lvaG-------~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~ 145 (205)
T 1ryp_H 80 -GT-PSTETAASVFKELCYENKDN-----LTAGIIVAG-------YDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYG 145 (205)
T ss_dssp -SS-CCHHHHHHHHHHHHHHTTTT-----CCEEEEEEE-------EETTTEEEEEEECTTSCCEEESEEEESGGGGGGHH
T ss_pred -CC-CCHHHHHHHHHHHHHhhhcC-----ceEEEEEEE-------EecCCCcEEEEECCCccEEecCEEEEEecHHHHHH
Confidence 12 22222111111 000010 223333332 4444679999999999753 111222244333444
Q ss_pred HHHHHHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEE
Q psy8777 184 RYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILI 230 (291)
Q Consensus 184 ~~e~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~ 230 (291)
.++. .++.+|+.+++.+.+.+.+.....+....+-.+++.++
T Consensus 146 ~Le~-----~~~~~~s~eea~~l~~~al~~a~~~d~~sg~~i~v~vi 187 (205)
T 1ryp_H 146 YCDK-----NFRENMSKEETVDFIKHSLSQAIKWDGSSGGVIRMVVL 187 (205)
T ss_dssp HHHH-----HCCTTCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEE
T ss_pred HHHh-----ccCCCCCHHHHHHHHHHHHHHHHHhCCccCCeEEEEEE
Confidence 4443 24568999999986666654444433334556666665
No 57
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=99.80 E-value=1.1e-19 Score=159.99 Aligned_cols=190 Identities=14% Similarity=0.152 Sum_probs=109.5
Q ss_pred CCCCcchhhh------HHHHHHhcCCceEEEEecCCeEEEEEeccCCC-CccCCCCcceeEeecCcEEEEEeccccchhh
Q psy8777 17 SPEGRLYQVE------YAFKAINQGGVTSVAVKGVDTAVVATEKKVPD-SLVDPKTVTNLYSLTPTVGCVMTGMQADSRY 89 (291)
Q Consensus 17 sp~g~~~q~e------ya~~av~~g~~t~vgi~~~~~vv~a~~~~~~~-~l~~~~~~~ki~~i~~~~~~~~~G~~~D~~~ 89 (291)
||+.-|.+.. ++.++|++| +|+|||+++||||||+|+|.+. .++.+++.+||++|++|++|++||+.+|+|.
T Consensus 51 ~p~~~~~~~~~~~~~~~~~~~v~~G-tT~vgik~~dGVVlAaD~r~t~G~li~~~~~~KI~~I~d~i~~~~aG~~AD~~~ 129 (287)
T 3nzj_K 51 SPQQFLRAHTDDSRNPDCKIKIAHG-TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQF 129 (287)
T ss_dssp --------------------------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECEECHHHHHH
T ss_pred CHHHHHHHhcccccccchhhheccC-ceEEEEEECCEEEEEEccccccCceeecCCcceEEEEcCcEEEEecCCHHHHHH
Confidence 5555555542 789999999 5999999999999999999886 5777788899999999999999999999999
Q ss_pred hhhhhcccc-------cccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEec
Q psy8777 90 QVQRARAGF-------DRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLT 162 (291)
Q Consensus 90 ~~~~~~~~y-------d~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~ 162 (291)
+++.++.+. ++.+++....-.+.++-|..+ . .+....+|.+. ++++.+|+||.+|
T Consensus 130 l~~~lr~~~~~y~~~~~~~isv~~la~~ls~~l~~~r----~-------~p~~v~~lvaG-------~D~~~gp~Ly~iD 191 (287)
T 3nzj_K 130 WETWLGSQCRLHELREKERISVAAASKILSNLVYQYK----G-------AGLSMGTMICG-------YTRKEGPTIYYVD 191 (287)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTT----T-------SCCCEEEEEEE-------EETTTEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhc----C-------CCceEEEEEEE-------EcCCCCCEEEEEC
Confidence 999888432 222222111111111111111 1 13333333332 4445789999999
Q ss_pred CcEEEE-eecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEE
Q psy8777 163 PTVGCV-MTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILI 230 (291)
Q Consensus 163 ~~~~~~-~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~ 230 (291)
|.|.+. ....+.+.++...+..++. .++.+|+.+++++.+.+.+.....+.....-.+++.++
T Consensus 192 p~G~~~~~~~~AiGsgs~~a~~~Le~-----~y~~dms~eEAi~la~~aL~~a~~rD~~sg~~i~V~vI 255 (287)
T 3nzj_K 192 SDGTRLKGDIFCVGSGQTFAYGVLDS-----NYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHV 255 (287)
T ss_dssp TTCCEEECSEEEESTTHHHHHHHHHT-----SCCTTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEE
T ss_pred CCceEEEcCeEEEecchHHHHHHHHH-----hhcCCCCHHHHHHHHHHHHHHHHhhCcCCCCceEEEEE
Confidence 999763 2222233555544444443 34568999999986666664444433333334555554
No 58
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=99.79 E-value=7.5e-20 Score=155.66 Aligned_cols=192 Identities=10% Similarity=-0.003 Sum_probs=125.2
Q ss_pred HHHHhcCCceEEEEecCCeEEEEEeccCCC-CccCCCCcceeEeecCcEEEEEeccccchhhhhhhhccc--------cc
Q psy8777 29 FKAINQGGVTSVAVKGVDTAVVATEKKVPD-SLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARAG--------FD 99 (291)
Q Consensus 29 ~~av~~g~~t~vgi~~~~~vv~a~~~~~~~-~l~~~~~~~ki~~i~~~~~~~~~G~~~D~~~~~~~~~~~--------yd 99 (291)
++||++| +|+|||+++||||||+|+|.+. .+..+++.+|||+|++|++|++||+.+|+|.+++.+|.+ |+
T Consensus 2 ~~av~~G-tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~ 80 (219)
T 1iru_N 2 QNPMVTG-TSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDG 80 (219)
T ss_dssp CSCCSEE-CCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred CCCccCC-ceEEEEEeCCEEEEEECCccccCcEEecCCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3688998 4999999999999999999886 677778889999999999999999999999999999843 22
Q ss_pred ccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEE-eecccccHHH
Q psy8777 100 RHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCV-MTGMQADSRY 178 (291)
Q Consensus 100 ~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~-~sG~~~D~~~ 178 (291)
.++++......+.++-|..+ + +.+|....+|.+. +++ .+|+||.+||+|.+. ....+.++++
T Consensus 81 ~~~~v~~la~~l~~~ly~~r----~-----~~~P~~v~~lvaG-------~D~-~gp~Ly~id~~G~~~~~~~~aiGsgs 143 (219)
T 1iru_N 81 HSYSPRAIHSWLTRAMYSRR----S-----KMNPLWNTMVIGG-------YAD-GESFLGYVDMLGVAYEAPSLATGYGA 143 (219)
T ss_dssp CCCCHHHHHHHHHHHHHHHH----H-----TTCCCCEEEEEEE-------EET-TEEEEEEECSSCCEEECSEEECTTHH
T ss_pred CCCCHHHHHHHHHHHHHHhc----c-----cCCCceEEEEEEE-------EEC-CCCEEEEECCCCCeEECCeEEECccH
Confidence 22222211112222222211 1 1235555555554 443 589999999999764 2223334666
Q ss_pred HHHHHHHHHHHhHhhhCC--CCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECCC
Q psy8777 179 QVQRARYEAASFKYKHGY--SMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPA 246 (291)
Q Consensus 179 ~~~~~~~e~~~~~~~~~~--~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~~ 246 (291)
...+..++.. ++. +|+.+++.+.+.+.+.....+.....-.+++.++. + +|.+....+..
T Consensus 144 ~~a~~~Le~~-----~~~~~~mt~eea~~l~~~al~~~~~~d~~sg~~i~v~vi~--~-~g~~~~~~~~i 205 (219)
T 1iru_N 144 YLAQPLLREV-----LEKQPVLSQTEARDLVERCMRVLYYRDARSYNRFQTATVT--E-KGVEIEGPLST 205 (219)
T ss_dssp HHTHHHHHHH-----HTSCSCCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEE--T-TEEEEEEEECC
T ss_pred HHHHHHHHhh-----cCCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEc--C-CCEEEcCCeec
Confidence 6555555542 334 89999999866665544434333344556666663 3 34555544433
No 59
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=99.79 E-value=6.9e-20 Score=157.30 Aligned_cols=197 Identities=12% Similarity=0.039 Sum_probs=127.1
Q ss_pred HHHHhcCCceEEEEecCCeEEEEEeccCCC-CccCCCCcceeEeecCcEEEEEeccccchhhhhhhhcccc---------
Q psy8777 29 FKAINQGGVTSVAVKGVDTAVVATEKKVPD-SLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARAGF--------- 98 (291)
Q Consensus 29 ~~av~~g~~t~vgi~~~~~vv~a~~~~~~~-~l~~~~~~~ki~~i~~~~~~~~~G~~~D~~~~~~~~~~~y--------- 98 (291)
++||++|+ |+|||+++||||||+|+|.+. .++.+++.+|||+|++|++|++||+.+|+|.+++.++.+.
T Consensus 2 ~~av~~Gt-t~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~ 80 (233)
T 1ryp_N 2 QQPIVTGT-SVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPL 80 (233)
T ss_dssp CCCCEEEC-CEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred cccccCCc-eEEEEEECCEEEEEEcCccccCCeeecCCcCceEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHhhccch
Confidence 36789985 999999999999999999886 5777778899999999999999999999999999988432
Q ss_pred ---cccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEEe-ecccc
Q psy8777 99 ---DRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVM-TGMQA 174 (291)
Q Consensus 99 ---d~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~~-sG~~~ 174 (291)
+..+++......+.++-|..+ + +.+|....+|.+. +++..+|+||.+||.|.+.- ...+.
T Consensus 81 ~~~~~~~~v~~la~~l~~~ly~~r----~-----~~~P~~v~~lvaG-------~D~~~gp~Ly~id~~G~~~~~~~~ai 144 (233)
T 1ryp_N 81 ADAEEALEPSYIFEYLATVMYQRR----S-----KMNPLWNAIIVAG-------VQSNGDQFLRYVNLLGVTYSSPTLAT 144 (233)
T ss_dssp TTTTTSCCHHHHHHHHHHHHHHHH----H-----TTCCCCEEEEEEE-------ECTTSCEEEEEEETTCCEECCSEEEC
T ss_pred hhcCCCCCHHHHHHHHHHHHHHhc----C-----CCCCceEEEEEEE-------EcCCCCEEEEEECCCcCeEEcCEEEE
Confidence 222222111111112122211 1 1345565555554 45445899999999998642 22233
Q ss_pred cHHHHHHHHHHHHHHhHhhhCC-----CCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEECCCCce
Q psy8777 175 DSRYQVQRARYEAASFKYKHGY-----SMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYY 249 (291)
Q Consensus 175 D~~~~~~~~~~e~~~~~~~~~~-----~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d~~G~~ 249 (291)
++.+...+..++. .++. +|+.+++.+.+.+.+.....+....+-.+++.++. ++.|.+...-+..-.+
T Consensus 145 Gsgs~~a~~~Le~-----~~~~~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~--~~~g~~~~~~~~i~~~ 217 (233)
T 1ryp_N 145 GFGAHMANPLLRK-----VVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIID--KNTGLTFKKNLQVENM 217 (233)
T ss_dssp THHHHHHHHHHTT-----TCSSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEE--TTTEEEEEEEEECCSC
T ss_pred CcCHHHHHHHHHH-----hhccccccCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEE--CCCCeEEcChHhcccc
Confidence 4666655555543 2334 79999999866665544444433445567777764 3224555544433333
No 60
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=99.79 E-value=2.9e-19 Score=150.48 Aligned_cols=175 Identities=15% Similarity=0.160 Sum_probs=115.0
Q ss_pred hcCCceEEEEecCCeEEEEEeccCCCCccCCC-CcceeEeecCcEEEEEeccccchhhhhhhhccccc-------ccccc
Q psy8777 33 NQGGVTSVAVKGVDTAVVATEKKVPDSLVDPK-TVTNLYSLTPTVGCVMTGMQADSRYQVQRARAGFD-------RHITI 104 (291)
Q Consensus 33 ~~g~~t~vgi~~~~~vv~a~~~~~~~~l~~~~-~~~ki~~i~~~~~~~~~G~~~D~~~~~~~~~~~yd-------~~~~~ 104 (291)
.+| +|+|||+++||||||+|+|.+.++...+ +.+|||+|++|++|++||+.+|+|.+++.++.+.. ..+++
T Consensus 6 ~~G-tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 84 (205)
T 1iru_J 6 YNG-GAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKP 84 (205)
T ss_dssp SSC-CEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSSCCCH
T ss_pred CCC-CeEEEEEeCCEEEEEECCccccCCeEeecCCccEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHhhcCCCCCH
Confidence 577 5999999999999999999998877654 77999999999999999999999999999985422 22222
Q ss_pred cCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCC-CCcceEEEecCcEEE-Eeec-ccccHHHHHH
Q psy8777 105 FSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDP-KTVTNLYSLTPTVGC-VMTG-MQADSRYQVQ 181 (291)
Q Consensus 105 ~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~-~~~~kI~~i~~~~~~-~~sG-~~~D~~~~~~ 181 (291)
......+.++-|.. ++. |....++.+. +++ +.+|+||.+||.|.+ ...+ .+.+.++...
T Consensus 85 ~~la~~l~~~~y~~----r~~-------P~~v~~lvaG-------~D~~~~~p~Ly~idp~G~~~~~~~~~aiG~gs~~a 146 (205)
T 1iru_J 85 YTLMSMVANLLYEK----RFG-------PYYTEPVIAG-------LDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQM 146 (205)
T ss_dssp HHHHHHHHHHHHTT----TTS-------CCSCCCEEEE-------ECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHH
T ss_pred HHHHHHHHHHHHHh----cCC-------CceEEEEEEE-------EeCCCCCeEEEEECCCCCccccCCeeEeeeCHHHH
Confidence 11111111111111 111 3333333332 443 467999999999986 3333 3344555555
Q ss_pred HHHHHHHHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEE
Q psy8777 182 RARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILIS 231 (291)
Q Consensus 182 ~~~~e~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G 231 (291)
+..++. .+..+|+.+++.+.+.+.+.....+....+..+++.++.
T Consensus 147 ~~~Le~-----~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~ 191 (205)
T 1iru_J 147 YGMCES-----LWEPNMDPDHLFETISQAMLNAVDRDAVSGMGVIVHIIE 191 (205)
T ss_dssp HHHHHH-----HCCSSCCHHHHHHHHHHHHHHHGGGBTTSCSCEEEEEEE
T ss_pred HHHHhc-----ccCCCCCHHHHHHHHHHHHHHHHHhCcccCCceEEEEEc
Confidence 555554 345689999999966666654444443345667777664
No 61
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=99.79 E-value=7.6e-20 Score=159.93 Aligned_cols=202 Identities=11% Similarity=0.038 Sum_probs=129.2
Q ss_pred hhhHHHHHHhcCCceEEEEecCCeEEEEEeccCCC-CccCCCCcceeEeecCcEEEEEeccccchhhhhhhhcccc----
Q psy8777 24 QVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPD-SLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARAGF---- 98 (291)
Q Consensus 24 q~eya~~av~~g~~t~vgi~~~~~vv~a~~~~~~~-~l~~~~~~~ki~~i~~~~~~~~~G~~~D~~~~~~~~~~~y---- 98 (291)
..+-+++|+++| +|+|||+++||||||+|+|.+. .++.+++.+||++|++|++|++||+.+|+|.+++.+|.+.
T Consensus 30 ~~~~~~~av~~G-tT~vgi~~~dgVVlAaD~r~t~g~~i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~ 108 (266)
T 1g0u_M 30 PMVNTQQPIVTG-TSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENA 108 (266)
T ss_dssp ----CCCCCEEE-CCEEEEEETTEEEEEEECCEEETTEEEECCCCCEEECTTSEEEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhccCcccC-ceEEEEEECCEEEEEEcCCcccCceeecCCcCcEEEcCCCEEEEeccCHHHHHHHHHHHHHHHHHhh
Confidence 357788999998 5999999999999999999886 5777778899999999999999999999999999998432
Q ss_pred --------cccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEEe-
Q psy8777 99 --------DRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVM- 169 (291)
Q Consensus 99 --------d~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~~- 169 (291)
+..+++......+.++-|..+ + +.++....+|.+. +++..+|+||.+||.|.+.-
T Consensus 109 ~~~~~~~~~~~~~v~~la~~l~~~ly~~r----~-----~~~P~~v~~lvaG-------~D~~~gp~Ly~idp~G~~~~~ 172 (266)
T 1g0u_M 109 YDNPLADAEEALEPSYIFEYLATVMYQRR----S-----KMNPLWNAIIVAG-------VQSNGDQFLRYVNLLGVTYSS 172 (266)
T ss_dssp TTCTTTTTTTSCCHHHHHHHHHHHHHHHH----H-----TTCCCCEEEEEEE-------ECTTSCEEEEEEETTCCEECC
T ss_pred hccchhhcCCCCCHHHHHHHHHHHHHHhc----c-----CCCCceEEEEEEE-------EcCCCCEEEEEECCCCCEEeC
Confidence 222222111111112222221 1 1335555555554 45445899999999998642
Q ss_pred ecccccHHHHHHHHHHHHHHhHhhhCC-----CCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEEEeCCCCcEEEEEC
Q psy8777 170 TGMQADSRYQVQRARYEAASFKYKHGY-----SMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTD 244 (291)
Q Consensus 170 sG~~~D~~~~~~~~~~e~~~~~~~~~~-----~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G~d~~~gp~Ly~~d 244 (291)
...+.++.+...+..++. .++. +|+.+++++.+.+.+.....+.....-.+++.++. ++.|.++..-+
T Consensus 173 ~~~aiGsgs~~a~~~Le~-----~~~~~~~~~~ms~eeA~~la~~al~~a~~rd~~sg~~i~v~vI~--k~~g~~~~~~~ 245 (266)
T 1g0u_M 173 PTLATGFGAHMANPLLRK-----VVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIID--KNTGLTFKKNL 245 (266)
T ss_dssp SEEECTHHHHTHHHHHTT-----TCSSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEE--TTTEEEEEEEE
T ss_pred CEEEEccCHHHHHHHHHH-----hhcccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEE--CCCCeEEcCHH
Confidence 222334666555554443 2334 79999999866665544444433345566766663 32255555544
Q ss_pred CCCce
Q psy8777 245 PAGYY 249 (291)
Q Consensus 245 ~~G~~ 249 (291)
..-.+
T Consensus 246 ei~~~ 250 (266)
T 1g0u_M 246 QVENM 250 (266)
T ss_dssp ECCCC
T ss_pred Hhhhh
Confidence 44444
No 62
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=99.79 E-value=1.4e-19 Score=159.92 Aligned_cols=165 Identities=12% Similarity=0.032 Sum_probs=112.7
Q ss_pred HHHHHhcCCceEEEEecCCeEEEEEeccCCC-CccCCCCcceeEeecCcEEEEEeccccchhhhhhhhccc-------cc
Q psy8777 28 AFKAINQGGVTSVAVKGVDTAVVATEKKVPD-SLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARAG-------FD 99 (291)
Q Consensus 28 a~~av~~g~~t~vgi~~~~~vv~a~~~~~~~-~l~~~~~~~ki~~i~~~~~~~~~G~~~D~~~~~~~~~~~-------yd 99 (291)
|+||+++| +|+|||+++||||||+|+|.+. +++.+++.+|||+|++|++|++||+.+|++.++++++.+ |+
T Consensus 58 a~~Av~~G-tTiVgIk~kdGVVlAaD~r~t~G~li~~~~~~KI~~I~~~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~g 136 (294)
T 1q5r_H 58 SGDLAPHG-TTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEG 136 (294)
T ss_dssp --CCSCBC-CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhcC-ceEEEEEECCEEEEEEcCccccCceeecCCcceEEEECCcEEEEEeecHHHHHHHHHHHHHHHHHhhHhhC
Confidence 89999998 5999999999999999999887 688788889999999999999999999999999999844 22
Q ss_pred ccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCc-----ceEEEecCcEEEE-e--ec
Q psy8777 100 RHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTV-----TNLYSLTPTVGCV-M--TG 171 (291)
Q Consensus 100 ~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~-----~kI~~i~~~~~~~-~--sG 171 (291)
..+++.....++.++-|.... . ++++....+|.+. +++..+ |+||.+||+|.+. . ..
T Consensus 137 ~~isv~~la~~la~~l~~~~~------~--~~rp~~v~lLvaG-------~D~~~g~~~~~p~Ly~iDp~G~~~e~~~~~ 201 (294)
T 1q5r_H 137 VPLTFDGKANRLASMVRGNLG------A--AMQGLAVVPLLVG-------YDLDADDESRAGRIVSYDVVGGRYEERAGY 201 (294)
T ss_dssp SCCCHHHHHHHHHHHHHHHHH------H--HTTTTCEEEEEEE-------ECTTCSCTTSCEEEEEECSSSCEEECCSSE
T ss_pred CCCCHHHHHHHHHHHHHHHHh------h--hcCCcceEEEEEE-------EeCCCCcCCCCCEEEEECCCCeEEecCCCe
Confidence 333322211122222222110 0 1345555555543 444435 8999999999654 3 23
Q ss_pred ccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHHH
Q psy8777 172 MQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQV 213 (291)
Q Consensus 172 ~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~~~l~~~~~~ 213 (291)
.+.+..+...+..++. .|+.+|+.+++++.+.+.+..
T Consensus 202 ~AiGsgs~~a~~~Le~-----~y~~~ms~eEAi~la~~aL~~ 238 (294)
T 1q5r_H 202 HAVGSGSLFAKSALKK-----IYSPDSDEETALRAAIESLYD 238 (294)
T ss_dssp EEESTTHHHHHHHHHH-----HCCSSCCHHHHHHHHHHHHHH
T ss_pred EEEecCcHHHHHHHHH-----hccCCCCHHHHHHHHHHHHHH
Confidence 4455666655555554 345689999999866555543
No 63
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=99.78 E-value=6.7e-19 Score=149.13 Aligned_cols=180 Identities=14% Similarity=0.136 Sum_probs=116.6
Q ss_pred HhcCCceEEEEecCCeEEEEEeccCCCCccCC-CCcceeEeecCcEEEEEeccccchhhhhhhhccccc-------cccc
Q psy8777 32 INQGGVTSVAVKGVDTAVVATEKKVPDSLVDP-KTVTNLYSLTPTVGCVMTGMQADSRYQVQRARAGFD-------RHIT 103 (291)
Q Consensus 32 v~~g~~t~vgi~~~~~vv~a~~~~~~~~l~~~-~~~~ki~~i~~~~~~~~~G~~~D~~~~~~~~~~~yd-------~~~~ 103 (291)
|++| +|+|||+++||||||+|+|.++++... ++.+||++|++|++|++||+.+|+|.+++.++.+.. ..++
T Consensus 6 v~~G-tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 84 (213)
T 1iru_M 6 VFNG-GTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMT 84 (213)
T ss_dssp CCCC-CEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred cCCC-CcEEEEEeCCEEEEEECCCcccCCEEecCCCCcEEEcCCCEEEEccccHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 5688 599999999999999999999876544 578999999999999999999999999999984422 2222
Q ss_pred ccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEE-eecccccHHHHHHH
Q psy8777 104 IFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCV-MTGMQADSRYQVQR 182 (291)
Q Consensus 104 ~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~-~sG~~~D~~~~~~~ 182 (291)
+......+.++-|..+ .+|....+|.+. ++++..|+||.+||.|.+. ....+.+..+...+
T Consensus 85 v~~la~~l~~~~y~~r-----------~~P~~v~~lvaG-------~D~~g~p~Ly~id~~G~~~~~~~~aiGsg~~~a~ 146 (213)
T 1iru_M 85 TGAIAAMLSTILYSRR-----------FFPYYVYNIIGG-------LDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQ 146 (213)
T ss_dssp HHHHHHHHHHHHHHTT-----------TSCCCEEEEEEE-------ECTTSCEEEEEECTTSCEEEESEEEEETTHHHHH
T ss_pred HHHHHHHHHHHHHhhC-----------CCCceEEEEEEE-------EcCCCCEEEEEECCCCCEEECCEEEEeeCHHHHH
Confidence 2111111111111111 245555555554 4444459999999999753 22222335544455
Q ss_pred HHHHHHHhHhh-----hCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEE
Q psy8777 183 ARYEAASFKYK-----HGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILIS 231 (291)
Q Consensus 183 ~~~e~~~~~~~-----~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G 231 (291)
..++....+ . ++.+|+.+++++.+.+.+.....+....+..+++.++.
T Consensus 147 ~~Le~~~~~-~~~~~~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~ 199 (213)
T 1iru_M 147 PLLDNQVGF-KNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVT 199 (213)
T ss_dssp HHHHHHTTC-CSCSSCCCCCCCHHHHHHHHHHHHHHHHHHBTTSCSEEEEEEEE
T ss_pred HHHhhcccc-ccccccCCCCCCHHHHHHHHHHHHHHHHHhCCccCCcEEEEEEc
Confidence 555543211 1 45689999999866665544444443456677777764
No 64
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=99.78 E-value=7e-19 Score=148.15 Aligned_cols=178 Identities=12% Similarity=0.076 Sum_probs=111.5
Q ss_pred ceEEEEecCCeEEEEEeccCCCC-ccCCCCcceeEeecCcEEEEEeccccchhhhhhhhcccccccccccCCCCchhhHH
Q psy8777 37 VTSVAVKGVDTAVVATEKKVPDS-LVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARAGFDRHITIFSPEGRLYQVE 115 (291)
Q Consensus 37 ~t~vgi~~~~~vv~a~~~~~~~~-l~~~~~~~ki~~i~~~~~~~~~G~~~D~~~~~~~~~~~yd~~~~~~sp~grl~qve 115 (291)
+|+|||+++||||||+|+|.+++ +..+++.+|||+|++|++|++||+.+|+|.++++++.+...+-..+...-.+..+-
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (205)
T 1iru_H 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAA 80 (205)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEecCCcCceEEcCCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 48999999999999999999887 77777889999999999999999999999999999854322111111000111111
Q ss_pred HHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEEeec-ccccHHHHHHHHHHHHHHhHhhh
Q psy8777 116 YAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVMTG-MQADSRYQVQRARYEAASFKYKH 194 (291)
Q Consensus 116 ~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~~sG-~~~D~~~~~~~~~~e~~~~~~~~ 194 (291)
.......+..+. +....++.+. ++++.+|+||.++|+|.+.-.. .+.+.++...+..++. .+
T Consensus 81 ~~l~~~~~~~~~-----p~~~~~lvaG-------~D~~~gp~ly~~d~~G~~~~~~~~a~Gsgs~~a~~~Le~-----~~ 143 (205)
T 1iru_H 81 SLFKEMCYRYRE-----DLMAGIIIAG-------WDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDA-----TY 143 (205)
T ss_dssp HHHHHHHHHTTT-----TCCEEEEEEE-------EETTTEEEEEEECTTSCCEECSEEEESGGGGGGHHHHHH-----HC
T ss_pred HHHHHHHHhcCc-----CccEEEEEEE-------EeCCCCCEEEEECCCCcEEecCEEEECCCHHHHHHHHHH-----hc
Confidence 111111111101 4454455443 4445689999999999653111 1122444444444443 34
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEE
Q psy8777 195 GYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILIS 231 (291)
Q Consensus 195 ~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G 231 (291)
+.+|+.+++.+.+.+.+.....+....+..+++.++.
T Consensus 144 ~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~ 180 (205)
T 1iru_H 144 REGMTKEECLQFTANALALAMERDGSSGGVIRLAAIA 180 (205)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhccccCCcEEEEEEe
Confidence 5589999999866655544444433445667777764
No 65
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=99.78 E-value=1.1e-18 Score=146.59 Aligned_cols=170 Identities=14% Similarity=0.178 Sum_probs=112.3
Q ss_pred ceEEEEecCCeEEEEEeccCCC-CccCCCCcceeEeecCcEEEEEeccccchhhhhhhhcccc-------cccccccCCC
Q psy8777 37 VTSVAVKGVDTAVVATEKKVPD-SLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARAGF-------DRHITIFSPE 108 (291)
Q Consensus 37 ~t~vgi~~~~~vv~a~~~~~~~-~l~~~~~~~ki~~i~~~~~~~~~G~~~D~~~~~~~~~~~y-------d~~~~~~sp~ 108 (291)
+|+|||+++||||||+|+|.++ ++..+++.+|||+|++|++|++||+.+|+|.++++++.+. +.++++....
T Consensus 1 tt~vgi~~~dgVvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (202)
T 1j2q_H 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIA 80 (202)
T ss_dssp CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEECCCcCcCCEEeeccccCEEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 4899999999999999999887 5777788899999999999999999999999999998542 2222221111
Q ss_pred CchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEE-ee-cccccHHHHHHHHHHH
Q psy8777 109 GRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCV-MT-GMQADSRYQVQRARYE 186 (291)
Q Consensus 109 grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~-~s-G~~~D~~~~~~~~~~e 186 (291)
..+.++-|.. . .+|....++.+. +++ ++|+||.+||+|.+. .. ..+.+..+...+..++
T Consensus 81 ~~l~~~~~~~--------r---~rp~~~~~lvaG-------~D~-~gp~Ly~id~~G~~~~~~~~~aiG~g~~~a~~~Le 141 (202)
T 1j2q_H 81 TLTSNLLNSY--------R---YFPYLVQLLIGG-------IDS-EGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLE 141 (202)
T ss_dssp HHHHHHHHHT--------T---TSCCCEEEEEEE-------EET-TEEEEEEECTTCCEEEESSEEEESTTHHHHHHHHH
T ss_pred HHHHHHHHhh--------C---CCCceEEEEEEE-------EeC-CCCEEEEECCCCCeeecCCEEEEcCCHHHHHHHHH
Confidence 1111111111 1 235555555553 443 679999999999753 22 2344455555555555
Q ss_pred HHHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEE
Q psy8777 187 AASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILI 230 (291)
Q Consensus 187 ~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~ 230 (291)
. .++.+|+.+++.+.+.+.+.....+....+-.+++.++
T Consensus 142 ~-----~~~~~~s~eea~~la~~al~~~~~~d~~s~~~i~v~vi 180 (202)
T 1j2q_H 142 D-----RFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVKI 180 (202)
T ss_dssp H-----HCCTTCCHHHHHHHHHHHHHHHHTTCTTSCSCEEEEEE
T ss_pred h-----hcCCCcCHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEE
Confidence 4 34458999999986666654443433233444555554
No 66
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=99.78 E-value=2.1e-18 Score=145.03 Aligned_cols=175 Identities=12% Similarity=0.069 Sum_probs=116.1
Q ss_pred HhcCCceEEEEecCCeEEEEEeccCCCCccCCC-CcceeEeecCcEEEEEeccccchhhhhhhhccccc-------cccc
Q psy8777 32 INQGGVTSVAVKGVDTAVVATEKKVPDSLVDPK-TVTNLYSLTPTVGCVMTGMQADSRYQVQRARAGFD-------RHIT 103 (291)
Q Consensus 32 v~~g~~t~vgi~~~~~vv~a~~~~~~~~l~~~~-~~~ki~~i~~~~~~~~~G~~~D~~~~~~~~~~~yd-------~~~~ 103 (291)
+++| +|+|||+++||||||+|+|.+.++..++ +.+||++|+ |++|++||+.+|+|.+++.++.+.. ..++
T Consensus 5 ~~~G-tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 82 (204)
T 1ryp_J 5 SING-GIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMFRYKTNLYKLKEERAIE 82 (204)
T ss_dssp GSSC-CEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEET-TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred CCCC-CeEEEEEeCCEEEEEEcCCcccCCEEeeCCcceEEEeC-CEEEEeeEcHHHHHHHHHHHHHHHHHHhhccCCCCC
Confidence 4677 5999999999999999999998877654 789999999 9999999999999999999985422 2222
Q ss_pred ccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCC-CCcceEEEecCcEEE-Eeec-ccccHHHHH
Q psy8777 104 IFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDP-KTVTNLYSLTPTVGC-VMTG-MQADSRYQV 180 (291)
Q Consensus 104 ~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~-~~~~kI~~i~~~~~~-~~sG-~~~D~~~~~ 180 (291)
+......+.++-|. .++. |....++.+. +++ +.+|+||.+||.|.+ ...+ .+.+..+..
T Consensus 83 v~~la~~l~~~~y~----~~~~-------P~~v~~lvaG-------~D~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~ 144 (204)
T 1ryp_J 83 PETFTQLVSSSLYE----RRFG-------PYFVGPVVAG-------INSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQ 144 (204)
T ss_dssp HHHHHHHHHHHHHT----TTTS-------CCCEEEEEEE-------ECTTTCCEEEEEECTTCCEECCSSEEEEETTHHH
T ss_pred HHHHHHHHHHHHHH----hcCC-------CceEEEEEEE-------EeCCCCceEEEEECCCCCccccCceeEeccCHHH
Confidence 21111111111111 1111 4455555543 443 467999999999986 2323 223455555
Q ss_pred HHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEE
Q psy8777 181 QRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILIS 231 (291)
Q Consensus 181 ~~~~~e~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G 231 (291)
.+..++. .+..+|+.+++.+.+.+.+.....+....+..+++.++.
T Consensus 145 a~~~Le~-----~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~ 190 (204)
T 1ryp_J 145 LFGMCES-----LYEPNLEPEDLFETISQALLNAADRDALSGWGAVVYIIK 190 (204)
T ss_dssp HHHHHHH-----HCCSSCCHHHHHHHHHHHHHHHHTTBTTSCSCEEEEEEE
T ss_pred HHHHHhh-----hcCCCcCHHHHHHHHHHHHHHHHHhCcccCCcEEEEEEc
Confidence 5555554 245589999999976666655444443445667777764
No 67
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=99.77 E-value=4.7e-19 Score=150.66 Aligned_cols=171 Identities=19% Similarity=0.175 Sum_probs=111.4
Q ss_pred ceEEEEecCCeEEEEEeccCCCC-ccCCCCcceeEeecCcEEEEEeccccchhhhhhhhccc-------ccccccccCCC
Q psy8777 37 VTSVAVKGVDTAVVATEKKVPDS-LVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARAG-------FDRHITIFSPE 108 (291)
Q Consensus 37 ~t~vgi~~~~~vv~a~~~~~~~~-l~~~~~~~ki~~i~~~~~~~~~G~~~D~~~~~~~~~~~-------yd~~~~~~sp~ 108 (291)
+|+|||+++||||||+|+|.+.+ +..+++.+|||+|++|++|++||+.+|+|.+++.++.+ |+.++++....
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 81 (219)
T 3h4p_a 2 TTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLACA 81 (219)
T ss_dssp CCEEEEEETTEEEEECCCCEEETTEEEETTCCCEEEEETTEEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHHH
T ss_pred ccEEEEEECCEEEEEEcCCcccCCEeeccccceeEEecCCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 59999999999999999998875 66777889999999999999999999999999999843 22333222111
Q ss_pred CchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEE-ee-cccccHHHHHHHHHHH
Q psy8777 109 GRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCV-MT-GMQADSRYQVQRARYE 186 (291)
Q Consensus 109 grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~-~s-G~~~D~~~~~~~~~~e 186 (291)
..+.++-|..+ .+|....+|.+. +++..+|+||.+||.|.+. .. ..+.+..+...+..++
T Consensus 82 ~~l~~~~~~~~-----------~~P~~v~~lvaG-------~D~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le 143 (219)
T 3h4p_a 82 TLLSNILHSSR-----------MFPFLTQIIIGG-------YDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLE 143 (219)
T ss_dssp HHHHHHHHHTT-----------TTTCCCCCEEEE-------EETTTEEEEEEECSSCCEEECSSEEEESTTHHHHHHHHH
T ss_pred HHHHHHHHHhc-----------CCCceEEEEEEE-------EeCCCCcEEEEECCCCceEecCCEEEEcCCHHHHHHHHH
Confidence 11111111110 123343333333 4444789999999999764 33 3444455555555444
Q ss_pred HHHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEE
Q psy8777 187 AASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILI 230 (291)
Q Consensus 187 ~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~ 230 (291)
. .+..+|+.+++++.+...+.....+.....-.+++.++
T Consensus 144 ~-----~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi 182 (219)
T 3h4p_a 144 A-----GYDRDMSVEEGIKLALNALKSAMERDTFSGNGISLAVI 182 (219)
T ss_dssp T-----SCCTTCCHHHHHHHHHHHHHHHHTSCSSCCSCCCEEEE
T ss_pred H-----hcCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEE
Confidence 3 34568999999996666665444433333334454444
No 68
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=99.76 E-value=2.2e-18 Score=146.81 Aligned_cols=186 Identities=12% Similarity=0.120 Sum_probs=114.6
Q ss_pred HHhcCCceEEEEecCCeEEEEEeccCCCCcc-CCCCcceeEeecCcEEEEEeccccchhhhhhhhcccccccccccCCCC
Q psy8777 31 AINQGGVTSVAVKGVDTAVVATEKKVPDSLV-DPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARAGFDRHITIFSPEG 109 (291)
Q Consensus 31 av~~g~~t~vgi~~~~~vv~a~~~~~~~~l~-~~~~~~ki~~i~~~~~~~~~G~~~D~~~~~~~~~~~yd~~~~~~sp~g 109 (291)
.+++|+ |+|||+++||||||+|+|.+.++. ..++.+|||+|++|++|++||+.+|++.+++.++.+....-..+. .
T Consensus 5 ~v~~Gt-t~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~--~ 81 (222)
T 1ryp_M 5 YGDNGG-TILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHN--D 81 (222)
T ss_dssp CCCCCC-EEEEEECSSCEEEEEECCEEETTEEEESCCCCCEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHTT--T
T ss_pred cccCCc-cEEEEEeCCEEEEEEecccccCCEecCCCcCcEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHHHcC--C
Confidence 367884 999999999999999999988765 556789999999999999999999999999999843221111111 0
Q ss_pred chhhHHHHHhhhcC---CceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEEe-ecccccHHHHHHHHHH
Q psy8777 110 RLYQVEYAFKAINQ---GGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVM-TGMQADSRYQVQRARY 185 (291)
Q Consensus 110 rl~qve~~~~~~~~---g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~~-sG~~~D~~~~~~~~~~ 185 (291)
+-..++...+.+.+ .. . .+|....+|.+. ++.+..|+||.+||.|.+.- .-.+.+..+......+
T Consensus 82 ~~~~v~~la~~l~~~ly~~-r---~~P~~v~~ivaG-------~D~~g~p~Ly~~dp~G~~~~~~~~a~Gsg~~~a~~~L 150 (222)
T 1ryp_M 82 KKLSINSAARNIQHLLYGK-R---FFPYYVHTIIAG-------LDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFL 150 (222)
T ss_dssp CCCCHHHHHHHHHHHHHTT-T---TSCCCEEEEEEE-------ECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhc-C---CCCceEEEEEEE-------EcCCCCeEEEEECCCcCEEecCEEEEcCcHHHHHHHH
Confidence 11111211111110 00 0 124455555543 44444599999999998531 1112224444444444
Q ss_pred HHHHhHhh------------hCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEE
Q psy8777 186 EAASFKYK------------HGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILI 230 (291)
Q Consensus 186 e~~~~~~~------------~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~ 230 (291)
+....+.+ ++.+|+.+++.+.+.+.+.....+.-...-.+++.++
T Consensus 151 e~~~~~~~~~~~~~~~~~~~~~~~~s~eeA~~la~~al~~a~~rd~~sg~~i~v~vi 207 (222)
T 1ryp_M 151 DNQVNFKNQYEPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIV 207 (222)
T ss_dssp HHHTSCTTCBCTTSTTCSBCCCCCCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEE
T ss_pred hcccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEE
Confidence 44321111 5668999999986666554444443334556666666
No 69
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=99.76 E-value=3.2e-18 Score=143.29 Aligned_cols=173 Identities=13% Similarity=0.047 Sum_probs=113.2
Q ss_pred ceEEEEecCCeEEEEEeccCCCCccC-CCCcceeEeecCcEEEEEeccccchhhhhhhhccc-------ccccccccCCC
Q psy8777 37 VTSVAVKGVDTAVVATEKKVPDSLVD-PKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARAG-------FDRHITIFSPE 108 (291)
Q Consensus 37 ~t~vgi~~~~~vv~a~~~~~~~~l~~-~~~~~ki~~i~~~~~~~~~G~~~D~~~~~~~~~~~-------yd~~~~~~sp~ 108 (291)
+|+|||+++||||||+|+|.+.++.. .++.+|||+|++|++|++||+.+|+|.+++.++.+ |++++++....
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 81 (198)
T 1ryp_K 2 DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVS 81 (198)
T ss_dssp CCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred ceEEEEEECCEEEEEECCCcccCCEEEecCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 58999999999999999999877654 45789999999999999999999999999999844 22222221111
Q ss_pred CchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCC-CCcceEEEecCcEEEE-eecccccHHHHHHHHHHH
Q psy8777 109 GRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDP-KTVTNLYSLTPTVGCV-MTGMQADSRYQVQRARYE 186 (291)
Q Consensus 109 grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~-~~~~kI~~i~~~~~~~-~sG~~~D~~~~~~~~~~e 186 (291)
..+.++-|.. . . . .+|....++.+. +++ +.+|+||.+||.|.+. ....+.+..+...+..++
T Consensus 82 ~~l~~~l~~~--~---~-~---r~p~~v~~lvaG-------~D~~~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le 145 (198)
T 1ryp_K 82 SFVRQELAKS--I---R-S---RRPYQVNVLIGG-------YDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLD 145 (198)
T ss_dssp HHHHHHHHHH--T---T-S---SSCCCEEEEEEE-------EETTTTEEEEEEECTTCCEEECSEEECTTHHHHHHHHHH
T ss_pred HHHHHHHHHh--c---c-c---CCCceEEEEEEE-------EeCCCCCcEEEEECCCCCEEECCEEEEcccHHHHHHHHH
Confidence 1111111111 0 0 0 025555555554 444 4689999999999863 222334466655555555
Q ss_pred HHHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEE
Q psy8777 187 AASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILI 230 (291)
Q Consensus 187 ~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~ 230 (291)
. .+..+|+.+++.+.+.+.+.....+....+-.+++.++
T Consensus 146 ~-----~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi 184 (198)
T 1ryp_K 146 H-----HYRPDMTTEEGLDLLKLCVQELEKRMPMDFKGVIVKIV 184 (198)
T ss_dssp H-----HCCTTCCHHHHHHHHHHHHHHHHHHCSBCCCCEEEEEE
T ss_pred h-----hcCCCCCHHHHHHHHHHHHHHHHHhCccCCCceEEEEE
Confidence 4 34558999999986655554444443344556666665
No 70
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=99.76 E-value=2.4e-18 Score=145.58 Aligned_cols=172 Identities=12% Similarity=0.134 Sum_probs=111.5
Q ss_pred ceEEEEecCCeEEEEEeccCCC-CccCCCCcceeEeecCcEEEEEeccccchhhhhhhhccccc-------ccccccCCC
Q psy8777 37 VTSVAVKGVDTAVVATEKKVPD-SLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARAGFD-------RHITIFSPE 108 (291)
Q Consensus 37 ~t~vgi~~~~~vv~a~~~~~~~-~l~~~~~~~ki~~i~~~~~~~~~G~~~D~~~~~~~~~~~yd-------~~~~~~sp~ 108 (291)
+|+|||+++||||||+|+|.+. ++..+++.+||++|++|++|++||+.+|+|.++++++.+.. .++++....
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (212)
T 1ryp_L 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS 80 (212)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCCeEecCcccceeeeCCcEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 4899999999999999999987 68777888999999999999999999999999999985432 222221111
Q ss_pred CchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEE-eecccccHHHHHHHHHHHH
Q psy8777 109 GRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCV-MTGMQADSRYQVQRARYEA 187 (291)
Q Consensus 109 grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~-~sG~~~D~~~~~~~~~~e~ 187 (291)
..+.++-|..+ +. +....++.+. ++++.+|+||.+||.|.+. ....+.+.++...+..++.
T Consensus 81 ~~l~~~~~~~~---~~--------p~~v~~lvaG-------~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~ 142 (212)
T 1ryp_L 81 KILSNLVYQYK---GA--------GLSMGTMICG-------YTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDS 142 (212)
T ss_dssp HHHHHHHHHTT---TS--------CCCBEEEEEE-------EETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHH
T ss_pred HHHHHHHHhhC---CC--------CceEEEEEEE-------EeCCCCCEEEEEcCCceeEecCCEEEcCCHHHHHHHHHh
Confidence 11111111110 10 2344444433 4445689999999999753 2222333555555555544
Q ss_pred HHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEE
Q psy8777 188 ASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILIS 231 (291)
Q Consensus 188 ~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G 231 (291)
.++.+|+.+++.+.+.+.+.....+....+..+++.++.
T Consensus 143 -----~~~~~~s~eea~~la~~al~~~~~rd~~s~~~i~v~vi~ 181 (212)
T 1ryp_L 143 -----NYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVT 181 (212)
T ss_dssp -----HCCTTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEE
T ss_pred -----hCCCCCCHHHHHHHHHHHHHHHHHhccccCCceEEEEEc
Confidence 345589999999866666544444433445566666653
No 71
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=99.76 E-value=9.8e-19 Score=150.10 Aligned_cols=85 Identities=39% Similarity=0.610 Sum_probs=79.6
Q ss_pred hcccccccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEEeeccc
Q psy8777 94 ARAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVMTGMQ 173 (291)
Q Consensus 94 ~~~~yd~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~~sG~~ 173 (291)
++..||+++++|||+|||+|+|||++++++|+ +++|+++++||||++|++.+++++..++.+||++|+++++++++|..
T Consensus 1 ~~~~yd~~~t~fsp~Grl~QvEya~~av~~Gt-t~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~ 79 (233)
T 1iru_B 1 AERGYSFSLTTFSPSGKLVQIEYALAAVAGGA-PSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMG 79 (233)
T ss_dssp CCCCCCSBSCCCCTTSCCHHHHHHHHHHHTSC-CEEEEECSSCEEEEEECCCCCSSBCSTTCCSSEESSSSEEEEEEECH
T ss_pred CCCCccCCceeECCCCeEehhHhHHHHHHcCC-cEEEEEeCCEEEEEEEecCCccccccccCCeEEEECCCEEEEEEEcc
Confidence 35689999999999999999999999999988 99999999999999999999888887888999999999999999999
Q ss_pred ccHHHH
Q psy8777 174 ADSRYQ 179 (291)
Q Consensus 174 ~D~~~~ 179 (291)
+|++.+
T Consensus 80 aD~~~l 85 (233)
T 1iru_B 80 PDYRVL 85 (233)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998765
No 72
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=99.76 E-value=5.7e-18 Score=142.09 Aligned_cols=179 Identities=7% Similarity=0.001 Sum_probs=114.1
Q ss_pred ceEEEEecCCeEEEEEeccCCC-CccCCCCcceeEeecCcEEEEEeccccchhhhhhhhcccccccccccCCCCchhhHH
Q psy8777 37 VTSVAVKGVDTAVVATEKKVPD-SLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARAGFDRHITIFSPEGRLYQVE 115 (291)
Q Consensus 37 ~t~vgi~~~~~vv~a~~~~~~~-~l~~~~~~~ki~~i~~~~~~~~~G~~~D~~~~~~~~~~~yd~~~~~~sp~grl~qve 115 (291)
+|+|||+++||||||+|+|.+. ++..+++.+||++|++|++|++||+.+|++.++++++.+....-..+. +-..++
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~---~~~~v~ 78 (201)
T 1iru_K 2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNG---YELSPT 78 (201)
T ss_dssp CCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHS---SCCCHH
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEccCcceEEEecCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcC---CCCCHH
Confidence 5899999999999999999987 577778889999999999999999999999999998844222111111 111112
Q ss_pred HHHhhhcCCceeEE-EEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEE-eecccccHHHHHHHHHHHHHHhHhh
Q psy8777 116 YAFKAINQGGVTSV-AVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCV-MTGMQADSRYQVQRARYEAASFKYK 193 (291)
Q Consensus 116 ~~~~~~~~g~~~~i-gi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~-~sG~~~D~~~~~~~~~~e~~~~~~~ 193 (291)
.+.+.+.+.-.... ..+|....++.+. +++..+|+||.+||.|.+. ....+.+..+...+..++. .
T Consensus 79 ~~a~~~~~~l~~~~~~~~p~~~~~lvaG-------~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~-----~ 146 (201)
T 1iru_K 79 AAANFTRRNLADCLRSRTPYHVNLLLAG-------YDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDR-----Y 146 (201)
T ss_dssp HHHHHHHHHHHHHHTSSSCCCEEEEEEE-------EETTTEEEEEEECTTCCEEECSEEEESHHHHHHHHHHHH-----H
T ss_pred HHHHHHHHHHHHHHhcCCCccEEEEEEE-------EeCCCCeEEEEECCCcCeEECCEEEECCcHHHHHHHHHh-----c
Confidence 11111110000000 0135555555553 4445689999999999863 2223344666655555554 3
Q ss_pred hCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEE
Q psy8777 194 HGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILI 230 (291)
Q Consensus 194 ~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~ 230 (291)
+..+++.+++.+.+.+.+.....+.......+++.++
T Consensus 147 ~~~~~s~eea~~l~~~al~~a~~rd~~sg~~i~v~vi 183 (201)
T 1iru_K 147 YTPTISRERAVELLRKCLEELQKRFILNLPTFSVRII 183 (201)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHTBCBCCCCEEEEEE
T ss_pred ccCCCCHHHHHHHHHHHHHHHHhhccccCCceEEEEE
Confidence 4558999999996666665444443334455666655
No 73
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=99.75 E-value=1.5e-18 Score=149.90 Aligned_cols=82 Identities=59% Similarity=0.948 Sum_probs=77.5
Q ss_pred cccccccccCCCCchhhHHHHHhhhcC-CceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEEeeccccc
Q psy8777 97 GFDRHITIFSPEGRLYQVEYAFKAINQ-GGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVMTGMQAD 175 (291)
Q Consensus 97 ~yd~~~~~~sp~grl~qve~~~~~~~~-g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~~sG~~~D 175 (291)
.||+++++|||+|||+|+|||++++++ |+ +++|+++++||||++|++.+++++..++.+|||+|+++++++++|..+|
T Consensus 2 ~yd~~~t~fsp~Grl~QvEYA~~av~~~Gt-t~vgi~~~dgVvlaad~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD 80 (243)
T 1ryp_A 2 GYDRHITIFSPEGRLYQVEYAFKATNQTNI-NSLAVRGKDCTVVISQKKVPDKLLDPTTVSYIFCISRTIGMVVNGPIPD 80 (243)
T ss_dssp GGGGTSSSCCTTSCCHHHHHHHHHTTTTCC-CEEEEECSSEEEEEEECCCCCTTBCGGGCCSEEECSSSCEEEEESCHHH
T ss_pred CCCCCCceECCCCeeHHHHHHHHHHhcCCC-cEEEEEeCCEEEEEEEecCCccccCCCcCCceEEECCCEEEEEEecHHH
Confidence 699999999999999999999999999 77 9999999999999999999988887778899999999999999999999
Q ss_pred HHHH
Q psy8777 176 SRYQ 179 (291)
Q Consensus 176 ~~~~ 179 (291)
++.+
T Consensus 81 ~~~l 84 (243)
T 1ryp_A 81 ARNA 84 (243)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8865
No 74
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=99.75 E-value=1.4e-18 Score=151.67 Aligned_cols=84 Identities=36% Similarity=0.692 Sum_probs=73.3
Q ss_pred cccccccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEEeecccc
Q psy8777 95 RAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVMTGMQA 174 (291)
Q Consensus 95 ~~~yd~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~~sG~~~ 174 (291)
...||+++++|||+|||+|||||++++++|+ +++|+++++||||++|++.+.+++..++.+|||+|+++++++++|..+
T Consensus 9 ~~~yd~~~t~fSp~Grl~QvEYA~~av~~Gt-t~vgi~~~dgVVlaaD~r~~~~li~~~~~~KI~~i~d~i~~~~aG~~a 87 (264)
T 3h4p_A 9 PSAYDRAITVFSPEGRLYQVEYAREAVRRGT-TAIGIACKDGVVLAVDRRITSKLVKIRSIEKIFQIDDHVAAATSGLVA 87 (264)
T ss_dssp -------CCCCCSSSSCHHHHHHHHHHHHSC-CEEEECCSSEEEEEEECCCCSTTBCTTTCCCEEEEETTEEEEEEECSH
T ss_pred ccccCCCcceECCCCeeHHHHhHHHHHhcCC-cEEEEEECCEEEEEEecCccCCccccCccccEEEecCcEEEEeccchH
Confidence 4679999999999999999999999999988 999999999999999999998888778889999999999999999999
Q ss_pred cHHHH
Q psy8777 175 DSRYQ 179 (291)
Q Consensus 175 D~~~~ 179 (291)
|++.+
T Consensus 88 D~~~l 92 (264)
T 3h4p_A 88 DARVL 92 (264)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99765
No 75
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=99.75 E-value=6.9e-18 Score=144.65 Aligned_cols=178 Identities=15% Similarity=0.137 Sum_probs=110.7
Q ss_pred ceEEEEecCCeEEEEEeccCCCCccC-CCCcceeEeecCcEEEEEeccccchhhhhhhhcccccccccccCCCCchhhHH
Q psy8777 37 VTSVAVKGVDTAVVATEKKVPDSLVD-PKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARAGFDRHITIFSPEGRLYQVE 115 (291)
Q Consensus 37 ~t~vgi~~~~~vv~a~~~~~~~~l~~-~~~~~ki~~i~~~~~~~~~G~~~D~~~~~~~~~~~yd~~~~~~sp~grl~qve 115 (291)
||+|||+++||||||+|+|.+++++. .++.+|||+|++|++|++||+.+|+|.+++.++.+...+-..+...-. ++
T Consensus 1 TT~vgi~~kdgVVlaaD~r~t~g~~v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~---v~ 77 (234)
T 3unf_H 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPR---VA 77 (234)
T ss_dssp CEEEEEECSSEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCC---HH
T ss_pred CeEEEEEeCCEEEEEECCCcccCCEeccCccccEEEecCCEEEEecccHHHHHHHHHHHHHHHHhhHHhcCCCCC---HH
Confidence 68999999999999999999887654 467799999999999999999999999999998543222111111111 11
Q ss_pred HHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEE-eecccccHHHHHHHHHHHHHHhHhhh
Q psy8777 116 YAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCV-MTGMQADSRYQVQRARYEAASFKYKH 194 (291)
Q Consensus 116 ~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~-~sG~~~D~~~~~~~~~~e~~~~~~~~ 194 (291)
.+.+.+.+.-... .++.+..++.+. +++ ++|+||.+||+|.+. ....+.++++...+..++. .+
T Consensus 78 ~la~~l~~~l~~~--~~p~~v~llvaG-------~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~-----~~ 142 (234)
T 3unf_H 78 TVTRILRQTLFRY--QGHVGASLVVGG-------VDL-NGPQLYEVHPHGSYSRLPFTALGSGQGAAVALLED-----RF 142 (234)
T ss_dssp HHHHHHHHHHHHT--TTCSCEEEEEEE-------EET-TEEEEEEECTTSCEEECSEEEEETTHHHHHHHHHH-----HC
T ss_pred HHHHHHHHHHHhc--CCCccEEEEEEE-------EeC-CCCEEEEECCCCCEEeccEEEEcCCchhhHHHHHh-----cc
Confidence 1111111000000 013333333332 343 689999999999763 2222233555555555554 34
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEEE
Q psy8777 195 GYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISY 232 (291)
Q Consensus 195 ~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G~ 232 (291)
+.+|+.+++.+.+.+-+.....+....+..+++.++..
T Consensus 143 ~~~ms~eeA~~la~~al~~~~~~D~~sg~~iev~vi~~ 180 (234)
T 3unf_H 143 QPNMTLEAAQELLVEAITAGILSDLGSGGNVDACVITA 180 (234)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEES
T ss_pred CCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEC
Confidence 56899999998665555443333333556777777643
No 76
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=99.75 E-value=2.7e-18 Score=147.37 Aligned_cols=85 Identities=33% Similarity=0.621 Sum_probs=71.9
Q ss_pred hcccccccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEEeeccc
Q psy8777 94 ARAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVMTGMQ 173 (291)
Q Consensus 94 ~~~~yd~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~~sG~~ 173 (291)
.+..||+++++|||+|||+|+|||.+++++|+ +++|+++++||||++|++.+.+++..++.+||++|+++++++++|..
T Consensus 4 ~~~~yd~~~t~fsp~Grl~QvEya~~av~~Gt-t~vgi~~~dgVvlaaD~r~~~~~~~~~~~~Ki~~i~~~i~~~~aG~~ 82 (233)
T 1yar_A 4 GQMAYSRAITVFSPDGRLFQVEYAREAVKKGS-TALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAAVTSGLV 82 (233)
T ss_dssp ---------CCCCTTSCCHHHHHHHHHHTTSC-CEEEEEETTEEEEEECCCCCCTTBCSTTCCSEEEEETTEEEEEEEBH
T ss_pred ccccCCCCCceECcCCeeHHHHhHHHHHhcCC-cEEEEEECCEEEEEEeccCCcccccccccCeEEEecCCEEEEEeeCH
Confidence 35679999999999999999999999999988 99999999999999999999778777788999999999999999999
Q ss_pred ccHHHH
Q psy8777 174 ADSRYQ 179 (291)
Q Consensus 174 ~D~~~~ 179 (291)
+|++.+
T Consensus 83 aD~~~l 88 (233)
T 1yar_A 83 ADARVL 88 (233)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998764
No 77
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=99.74 E-value=6.6e-18 Score=142.06 Aligned_cols=170 Identities=15% Similarity=0.172 Sum_probs=107.5
Q ss_pred ceEEEEecCCeEEEEEeccCCC-CccCCCCcceeEeecCcEEEEEeccccchhhhhhhhcccc-------cccccccCCC
Q psy8777 37 VTSVAVKGVDTAVVATEKKVPD-SLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARAGF-------DRHITIFSPE 108 (291)
Q Consensus 37 ~t~vgi~~~~~vv~a~~~~~~~-~l~~~~~~~ki~~i~~~~~~~~~G~~~D~~~~~~~~~~~y-------d~~~~~~sp~ 108 (291)
+|+|||+++||||||+|+|.++ ++..+++.+||++|++|++|++||+.+|+|.+++.++.+. +.++++....
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (204)
T 1iru_L 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAAS 80 (204)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCCEEEcCcccceEEcCCCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 4899999999999999999887 5777778899999999999999999999999999887432 2222221111
Q ss_pred CchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEE-eecccccHHHHHHHHHHHH
Q psy8777 109 GRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCV-MTGMQADSRYQVQRARYEA 187 (291)
Q Consensus 109 grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~-~sG~~~D~~~~~~~~~~e~ 187 (291)
..+.++-|..+ . .+....++.+. ++ +++|+||.+||+|.+. ....+.+.++...+..++.
T Consensus 81 ~~l~~~~~~~r-------~----~~~~v~~lvaG-------~D-~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~ 141 (204)
T 1iru_L 81 KLLANMVYQYK-------G----MGLSMGTMICG-------WD-KRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDR 141 (204)
T ss_dssp HHHHHHHHTTT-------T----SCCCBEEEEEE-------EC-SSSEEEEEEESSSCEEECSEEEESTTHHHHHHHHHT
T ss_pred HHHHHHHHHhC-------C----CCeeEEEEEEE-------Ee-CCCCEEEEECCCCcEEEeCCEEEEcCHHHHHHHHhc
Confidence 11111111110 1 12332233332 33 3689999999999753 2222233555444444443
Q ss_pred HHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEE
Q psy8777 188 ASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILI 230 (291)
Q Consensus 188 ~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~ 230 (291)
.++.+|+.+++.+.+.+.+.....+....+-.+++.++
T Consensus 142 -----~~~~~~s~eea~~l~~~al~~~~~rd~~s~~~i~v~vi 179 (204)
T 1iru_L 142 -----GYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYHV 179 (204)
T ss_dssp -----TCCTTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEE
T ss_pred -----cCCCCCCHHHHHHHHHHHHHHHHHhCccCCCceEEEEE
Confidence 34558999999986665554443333334445555555
No 78
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=99.74 E-value=3.3e-18 Score=147.97 Aligned_cols=83 Identities=35% Similarity=0.730 Sum_probs=77.0
Q ss_pred hcccccccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEEeeccc
Q psy8777 94 ARAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVMTGMQ 173 (291)
Q Consensus 94 ~~~~yd~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~~sG~~ 173 (291)
.++.||+++++|||+|||+|+|||++++.+|+ +++|+++++||||++|++.+.+++..++.+||++|+++++++++|..
T Consensus 4 ~~~~yd~~~t~fsp~Grl~QvEya~~av~~Gt-t~vgi~~~dgVvlaaD~r~~~~l~~~~~~~KI~~i~~~i~~~~aG~~ 82 (246)
T 1j2p_A 4 PQMGYDRAITVFSPDGRLFQVEYAREAVKRGA-TAIGIKCKEGVILIADKRVGSKLLEKDTIEKIYKIDEHICAATSGLV 82 (246)
T ss_dssp CCTTSSSCTTCCCTTSCCHHHHHHHHHHHTSC-CEEEEEETTEEEEEEECCCSCTTBCGGGCCSEEECSSSEEEEEEECH
T ss_pred cccCcCCCCceECCCCeehHHHhHHHHHHcCC-cEEEEEECCEEEEEEeccCCccccccCccCcEEEECCCEEEEEeEcc
Confidence 34579999999999999999999999999988 99999999999999999999777777778999999999999999999
Q ss_pred ccHH
Q psy8777 174 ADSR 177 (291)
Q Consensus 174 ~D~~ 177 (291)
+|++
T Consensus 83 aD~~ 86 (246)
T 1j2p_A 83 ADAR 86 (246)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9974
No 79
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=99.74 E-value=4.5e-18 Score=146.72 Aligned_cols=84 Identities=35% Similarity=0.758 Sum_probs=76.4
Q ss_pred cccccccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEEeecccc
Q psy8777 95 RAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVMTGMQA 174 (291)
Q Consensus 95 ~~~yd~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~~sG~~~ 174 (291)
++.||+.+++|||+|||+|+|||.+++.+|+ +++|+++++|||+++|++.+.+++..++.+||++|+++++++++|..+
T Consensus 5 ~~~yd~~~t~fsp~Grl~QvEya~~av~~Gt-t~vgi~~~dgVvlaaD~r~~~g~~~~~~~~Ki~~i~~~i~~~~aG~~a 83 (241)
T 1iru_E 5 RSEYDRGVNTFSPEGRLFQVEYDIEAIKLGS-TAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIA 83 (241)
T ss_dssp ---CCCCTTCBCTTSCBHHHHHHHHHHTTSC-CEEEEEETTEEEEEEECCCCCTTBCTTSCCSEEEEETTEEEEEEECHH
T ss_pred cCCCCCCCceECCCCccHHHHHHHHHHHcCC-cEEEEEcCCEEEEEEecccCCcCcCccccceEEEEcCCEEEEEeeChH
Confidence 4679999999999999999999999999988 999999999999999999997776677789999999999999999999
Q ss_pred cHHHH
Q psy8777 175 DSRYQ 179 (291)
Q Consensus 175 D~~~~ 179 (291)
|++.+
T Consensus 84 D~~~l 88 (241)
T 1iru_E 84 DAKTL 88 (241)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
No 80
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=99.73 E-value=5e-18 Score=147.48 Aligned_cols=85 Identities=33% Similarity=0.598 Sum_probs=79.1
Q ss_pred ccccccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEEeeccccc
Q psy8777 96 AGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVMTGMQAD 175 (291)
Q Consensus 96 ~~yd~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~~sG~~~D 175 (291)
..||+.+++|||+|||+|+|||++++++|+ +++|+++++||||++|++.+.+++..++.+|||+|+++++++++|..+|
T Consensus 5 ~~yd~~~t~fsp~Grl~QvEyA~~av~~Gt-t~vgi~~~dgVvlaaD~r~~~g~~~~~~~~KI~~i~~~i~~~~aG~~aD 83 (254)
T 1iru_G 5 TGYDLSASTFSPDGRVFQVEYAMKAVENSS-TAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLAD 83 (254)
T ss_dssp SSTTSCTTCCCTTSCCHHHHHHHHHHHTSC-CEEEEECSSBEEEEEEEECSCTTBCTTTTCCEEEEETTEEEEEEECHHH
T ss_pred cccCCCCccCCcCCccHHHHhHHHHHhcCC-CEEEEEECCEEEEEEecccCCCCcCcCcCCcEEEECCCEEEEEecChHH
Confidence 469999999999999999999999999988 9999999999999999999977766677899999999999999999999
Q ss_pred HHHHHH
Q psy8777 176 SRYQVQ 181 (291)
Q Consensus 176 ~~~~~~ 181 (291)
++.+.+
T Consensus 84 ~~~l~~ 89 (254)
T 1iru_G 84 ARSLAD 89 (254)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988754
No 81
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=99.73 E-value=6.1e-18 Score=145.84 Aligned_cols=82 Identities=37% Similarity=0.672 Sum_probs=76.2
Q ss_pred cccccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCC-CcceEEEecCcEEEEeeccccc
Q psy8777 97 GFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPK-TVTNLYSLTPTVGCVMTGMQAD 175 (291)
Q Consensus 97 ~yd~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~-~~~kI~~i~~~~~~~~sG~~~D 175 (291)
.||+.+++|||+|||+|+|||++++.+|+ +++|+++++||||++|++.+.+++..+ +.+||++|+++++++++|..+|
T Consensus 1 ~yd~~~t~fsp~Grl~QvEya~~av~~Gt-t~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD 79 (241)
T 1ryp_D 1 GYDRALSIFSPDGHIFQVEYALEAVKRGT-CAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNAD 79 (241)
T ss_dssp CCCCCCSCCBTTTBCHHHHHHHHHHTTSC-CEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHH
T ss_pred CCCCCceeECCCCcchHHHHHHHHHHcCC-CEEEEEeCCEEEEEEeeccCccCccccCCcCcEEEecCCEEEEEeecHHH
Confidence 49999999999999999999999999988 999999999999999999997776654 7899999999999999999999
Q ss_pred HHHH
Q psy8777 176 SRYQ 179 (291)
Q Consensus 176 ~~~~ 179 (291)
++.+
T Consensus 80 ~~~l 83 (241)
T 1ryp_D 80 SRIL 83 (241)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
No 82
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=99.73 E-value=7.8e-18 Score=145.47 Aligned_cols=82 Identities=39% Similarity=0.723 Sum_probs=77.1
Q ss_pred cccccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccC-CCCcceEEEecCcEEEEeeccccc
Q psy8777 97 GFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVD-PKTVTNLYSLTPTVGCVMTGMQAD 175 (291)
Q Consensus 97 ~yd~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~-~~~~~kI~~i~~~~~~~~sG~~~D 175 (291)
.||+.+++|||+|||+|+|||++++.+|+ +++|+++++||||++|++.+.+++. .++.+||++|+++++++++|..+|
T Consensus 4 ~yd~~~t~fsp~Grl~QvEyA~~av~~Gt-t~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD 82 (244)
T 1ryp_C 4 RYDSRTTIFSPEGRLYQVEYALESISHAG-TAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTAD 82 (244)
T ss_dssp GGCCCTTCBCTTSCBHHHHHHHHHHTTSC-CEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHHH
T ss_pred ccCCCCceECcCCeeHHHHhHHHHHhcCC-cEEEEEeCCEEEEEEeeccCCcCccCCCCCCcEEEECCCEEEEEEEcHHH
Confidence 69999999999999999999999999988 9999999999999999999977766 778899999999999999999999
Q ss_pred HHHH
Q psy8777 176 SRYQ 179 (291)
Q Consensus 176 ~~~~ 179 (291)
++.+
T Consensus 83 ~~~l 86 (244)
T 1ryp_C 83 AEIL 86 (244)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
No 83
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=99.73 E-value=5.4e-18 Score=149.31 Aligned_cols=84 Identities=37% Similarity=0.650 Sum_probs=78.2
Q ss_pred cccccccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEEeecccc
Q psy8777 95 RAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVMTGMQA 174 (291)
Q Consensus 95 ~~~yd~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~~sG~~~ 174 (291)
...||+++++|||+|||+|||||++++++|+ +++|+++++||||++|++.+.+++.....+|||+|+++++++++|+.+
T Consensus 5 ~~~yd~~~t~fSP~Grl~QvEYA~kAv~~Gt-T~Vgik~kdGVVlAaD~r~t~gl~~~~~~~KI~~I~d~i~~~~aG~~a 83 (288)
T 3nzj_F 5 GTGYDLSNSVFSPDGRNFQVEYAVKAVENGT-TSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSGLIP 83 (288)
T ss_dssp CCCTTSSTTCCCTTSCCHHHHHHHHHHHTSC-CEEEEEETTEEEEEEEEEECCTTBCTTCSCCCEEETTTEEEEEEECHH
T ss_pred cCCccCCcccCCCCCchHHHHHHHHHHhcCC-cEEEEEECCEEEEEEcCCcccCCccccccceEEEEcCCEEEEecCcHH
Confidence 3579999999999999999999999999998 999999999999999999997777666779999999999999999999
Q ss_pred cHHHH
Q psy8777 175 DSRYQ 179 (291)
Q Consensus 175 D~~~~ 179 (291)
|++.+
T Consensus 84 D~~~l 88 (288)
T 3nzj_F 84 DGRHL 88 (288)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99875
No 84
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=99.73 E-value=1.5e-17 Score=141.68 Aligned_cols=177 Identities=18% Similarity=0.153 Sum_probs=109.6
Q ss_pred ceEEEEecCCeEEEEEeccCCCCccC-CCCcceeEeecCcEEEEEeccccchhhhhhhhcccccccccccCCCCchhhHH
Q psy8777 37 VTSVAVKGVDTAVVATEKKVPDSLVD-PKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARAGFDRHITIFSPEGRLYQVE 115 (291)
Q Consensus 37 ~t~vgi~~~~~vv~a~~~~~~~~l~~-~~~~~ki~~i~~~~~~~~~G~~~D~~~~~~~~~~~yd~~~~~~sp~grl~qve 115 (291)
+|+|||+++||||||+|+|.+.+++. .++.+||++|++|++|++||+.+|+|.++++++.+...+-..+. +-..++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~t~g~~~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~---~~~~v~ 77 (222)
T 1ryp_I 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTS---REPRVV 77 (222)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHT---SCCCHH
T ss_pred CeEEEEEECCEEEEEEcCCcccCCeeecCCcccEEEecCCEEEEecccHHHHHHHHHHHHHHHHHHHHHcC---CCCCHH
Confidence 48999999999999999999887644 45679999999999999999999999999999854322111111 111111
Q ss_pred HHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEE-eecccccHHHHHHHHHHHHHHhHhhh
Q psy8777 116 YAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCV-MTGMQADSRYQVQRARYEAASFKYKH 194 (291)
Q Consensus 116 ~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~-~sG~~~D~~~~~~~~~~e~~~~~~~~ 194 (291)
.+.+.+.+---.. .++.+..+|.+. +++ ++|+||.+||+|.+. ....+.+..+...+..++. .+
T Consensus 78 ~~a~~l~~~l~~~--~~p~~v~~lvaG-------~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~-----~~ 142 (222)
T 1ryp_I 78 SALQMLKQHLFKY--QGHIGAYLIVAG-------VDP-TGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLES-----HW 142 (222)
T ss_dssp HHHHHHHHHHHHT--TTCSCEEEEEEE-------EET-TEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHH-----HC
T ss_pred HHHHHHHHHHhhc--CCCCCeeEEEEE-------EeC-CCCEEEEECCCCCEEecCEEEECCCHHHHHHHHHh-----hC
Confidence 1111111000000 124444444443 443 679999999999763 1122233544444444444 24
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEE
Q psy8777 195 GYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILIS 231 (291)
Q Consensus 195 ~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G 231 (291)
+.+|+.+++.+.+.+.+.....+....+..+++.++.
T Consensus 143 ~~~ms~eeA~~la~~al~~~~~~d~~sg~~i~v~vi~ 179 (222)
T 1ryp_I 143 KQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVME 179 (222)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEEE
T ss_pred CCCcCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEE
Confidence 5689999999866655544333333345567776663
No 85
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=99.73 E-value=5.3e-18 Score=146.84 Aligned_cols=81 Identities=43% Similarity=0.714 Sum_probs=76.3
Q ss_pred ccccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEEeecccccHH
Q psy8777 98 FDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVMTGMQADSR 177 (291)
Q Consensus 98 yd~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~~sG~~~D~~ 177 (291)
||+++++|||+|||+|+|||++++.+|+ +++|+++++||||++|++.+.+++..++.+|||+|+++++++++|..+|++
T Consensus 3 yd~~~t~fsp~Grl~QvEYA~~av~~Gt-t~vgi~~~dgVvlaaD~r~~~~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~ 81 (248)
T 1iru_D 3 YDRAITVFSPDGHLFQVEYAQEAVKKGS-TAVGVRGRDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADAR 81 (248)
T ss_dssp CCCCCSCCCTTSCCHHHHHHHHHHHTSC-CEEEECCSSEEEEEECCCCCCSSSCGGGGCSEEESSSSCEEEEEECHHHHH
T ss_pred ccCCCceECCCCcchHHHHHHHHHHcCC-CEEEEEeCCEEEEEEeecccccCccCCCCCcEEEEcCCEEEEEeecHHHHH
Confidence 9999999999999999999999999988 999999999999999999997777767789999999999999999999987
Q ss_pred HH
Q psy8777 178 YQ 179 (291)
Q Consensus 178 ~~ 179 (291)
.+
T Consensus 82 ~l 83 (248)
T 1iru_D 82 IV 83 (248)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 86
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=99.72 E-value=6.2e-18 Score=146.57 Aligned_cols=84 Identities=39% Similarity=0.625 Sum_probs=78.6
Q ss_pred cccccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEEeecccccH
Q psy8777 97 GFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVMTGMQADS 176 (291)
Q Consensus 97 ~yd~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~~sG~~~D~ 176 (291)
+||+.+++|||+|||+|+|||++++.+|+ +++|+++++||||++|++.+++++..++.+||++|+++++++++|..+|+
T Consensus 4 ~yd~~~t~fsp~Grl~QvEyA~~av~~Gt-t~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~ 82 (250)
T 1ryp_B 4 RYSFSLTTFSPSGKLGQIDYALTAVKQGV-TSLGIKATNGVVIATEKKSSSPLAMSETLSKVSLLTPDIGAVYSGMGPDY 82 (250)
T ss_dssp CCCSBSSCBCTTSCBHHHHHHHHHHHTSC-CEEEEEETTEEEEEEECCCSCSSBCGGGCCSSEEEETTEEEEEEECHHHH
T ss_pred cccCCceeECCCCccHHHHhHHHHHHcCC-cEEEEEECCEEEEEEeccCCCccccCcccCceEEECCCEEEEeeeCHHHH
Confidence 69999999999999999999999999988 99999999999999999998877777788999999999999999999999
Q ss_pred HHHHH
Q psy8777 177 RYQVQ 181 (291)
Q Consensus 177 ~~~~~ 181 (291)
+.+.+
T Consensus 83 ~~l~~ 87 (250)
T 1ryp_B 83 RVLVD 87 (250)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87643
No 87
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=99.72 E-value=8.4e-18 Score=145.21 Aligned_cols=83 Identities=37% Similarity=0.662 Sum_probs=76.6
Q ss_pred ccccccccccCCCCchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEEeeccccc
Q psy8777 96 AGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVMTGMQAD 175 (291)
Q Consensus 96 ~~yd~~~~~~sp~grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~~sG~~~D 175 (291)
..||+.+++|||+|||+|+|||.+++.+|+ +++|+++++||||++|++.+.+++..+..+||++|+++++++++|..+|
T Consensus 2 ~~yd~~~t~fsp~Grl~QvEya~~av~~Gt-t~vgi~~~dgVvlaaD~r~~~g~~~~~~~~KI~~i~~~i~~~~aG~~aD 80 (244)
T 1ryp_G 2 TGYDLSNSVFSPDGRNFQVEYAVKAVENGT-TSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSGLIPD 80 (244)
T ss_dssp CCTTSSTTCCCTTSCCHHHHHHHHHHHTSC-CEEEEEETTEEEEEEEEECCCTTBCTTTSCCCEEETTTEEEEEEECHHH
T ss_pred CCccCCcccCCcCCchHHHHhHHHHHHCCC-CEEEEEECCEEEEEEecccCCCCccccccCceEEecCCEEEEEcccHHH
Confidence 369999999999999999999999999988 9999999999999999999977766555699999999999999999999
Q ss_pred HHHH
Q psy8777 176 SRYQ 179 (291)
Q Consensus 176 ~~~~ 179 (291)
++.+
T Consensus 81 ~~~l 84 (244)
T 1ryp_G 81 GRHL 84 (244)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8865
No 88
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=99.72 E-value=1.5e-17 Score=142.87 Aligned_cols=157 Identities=11% Similarity=0.043 Sum_probs=106.2
Q ss_pred ceEEEEecCCeEEEEEeccCCC-CccCCCCcceeEeecCcEEEEEeccccchhhhhhhhcccc-------cccccccCCC
Q psy8777 37 VTSVAVKGVDTAVVATEKKVPD-SLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARAGF-------DRHITIFSPE 108 (291)
Q Consensus 37 ~t~vgi~~~~~vv~a~~~~~~~-~l~~~~~~~ki~~i~~~~~~~~~G~~~D~~~~~~~~~~~y-------d~~~~~~sp~ 108 (291)
+|+|||+++||||||+|+|.+. ++..+++.+||++|++|++|++||+.+|+|.+++.++.+. +.++++....
T Consensus 1 tT~vgi~~~dgVVlaaD~r~~~g~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (235)
T 1q5q_H 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKA 80 (235)
T ss_dssp CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEECCCCCcCCEEecCCcCcEEEeCCcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Confidence 4899999999999999999987 6888888899999999999999999999999999998442 2223221111
Q ss_pred CchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCc-----ceEEEecCcEEEE-e--ecccccHHHHH
Q psy8777 109 GRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTV-----TNLYSLTPTVGCV-M--TGMQADSRYQV 180 (291)
Q Consensus 109 grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~-----~kI~~i~~~~~~~-~--sG~~~D~~~~~ 180 (291)
.++.++-|... .. ++++....+|.+. +++..+ |+||.+||.|.+. . ...+.+..+..
T Consensus 81 ~~l~~~~~~~~-------~~-~~rp~~v~~lvaG-------~D~~~g~~~~~p~Ly~idp~G~~~~~~~~~~aiGsgs~~ 145 (235)
T 1q5q_H 81 NRLASMVRGNL-------GA-AMQGLAVVPLLVG-------YDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLF 145 (235)
T ss_dssp HHHHHHHHTTH-------HH-HTTTCCEEEEEEE-------ECTTCSSTTSCEEEEEECTTSCEEECCSSEEEESTTHHH
T ss_pred HHHHHHHHHHH-------Hh-hhcccceEEEEEE-------EECCCCccCCCCEEEEECCCCceEEeCCCeEEECCCHHH
Confidence 11111111110 10 1345565555544 444435 8999999999654 3 23445566665
Q ss_pred HHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHHH
Q psy8777 181 QRARYEAASFKYKHGYSMPIDQLCNRIADISQV 213 (291)
Q Consensus 181 ~~~~~e~~~~~~~~~~~~s~~~l~~~l~~~~~~ 213 (291)
.+..++. .+..+|+.+++++.+.+.+..
T Consensus 146 a~~~Le~-----~~~~~ms~eeA~~la~~al~~ 173 (235)
T 1q5q_H 146 AKSALKK-----IYSPDSDEETALRAAIESLYD 173 (235)
T ss_dssp HHHHHHH-----HCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHh-----hcCCCCCHHHHHHHHHHHHHH
Confidence 5555554 345689999999866555543
No 89
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=99.72 E-value=3.4e-17 Score=140.45 Aligned_cols=170 Identities=20% Similarity=0.238 Sum_probs=108.8
Q ss_pred ceEEEEecCCeEEEEEeccCCCCccCC-CCcceeEeecCcEEEEEeccccchhhhhhhhccccc-------ccccccCCC
Q psy8777 37 VTSVAVKGVDTAVVATEKKVPDSLVDP-KTVTNLYSLTPTVGCVMTGMQADSRYQVQRARAGFD-------RHITIFSPE 108 (291)
Q Consensus 37 ~t~vgi~~~~~vv~a~~~~~~~~l~~~-~~~~ki~~i~~~~~~~~~G~~~D~~~~~~~~~~~yd-------~~~~~~sp~ 108 (291)
+|+|||+++||||||+|+|.+.++... ++.+|||+|++|++|++||+.+|+|.+++.++.+.. +++++....
T Consensus 1 TTivgi~~~dgVVlaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 1iru_I 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTAN 80 (234)
T ss_dssp CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCceeccCcccceEEecCCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 489999999999999999999876544 567999999999999999999999999999985422 222211111
Q ss_pred CchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEE-eecccccHHHHHHHHHHHH
Q psy8777 109 GRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCV-MTGMQADSRYQVQRARYEA 187 (291)
Q Consensus 109 grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~-~sG~~~D~~~~~~~~~~e~ 187 (291)
..+.+.-|.. ++ +.+..++.+. +++ ++|+||.+||+|.+. ....+.++.+......++.
T Consensus 81 ~~l~~~l~~~----~~--------~~~v~llvaG-------~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~ 140 (234)
T 1iru_I 81 RMLKQMLFRY----RG--------YIGAALVLGG-------VDV-TGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFED 140 (234)
T ss_dssp HHHHHHHHHT----TT--------CSCEEEEEEE-------ECS-SCEEEEEECTTSCEEECSEEEESTTHHHHHHHHHH
T ss_pred HHHHHHHHhc----CC--------CCceeEEEEE-------EcC-CCCEEEEECCCCCEEecCEEEECCchHHHHHHHHH
Confidence 1111111111 11 2343333332 343 679999999999753 1122233555555454444
Q ss_pred HHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEEE
Q psy8777 188 ASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILIS 231 (291)
Q Consensus 188 ~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~G 231 (291)
.++.+|+.+++.+.+.+.+.....+.....-.+++.++.
T Consensus 141 -----~~~~~ms~eeA~~la~~al~~a~~~d~~sg~~i~v~vi~ 179 (234)
T 1iru_I 141 -----KFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDLCVIS 179 (234)
T ss_dssp -----SCCTTCCHHHHHTHHHHHHHHHHHHCTTCCSCEEEEEEE
T ss_pred -----hccCCCCHHHHHHHHHHHHHHHHHhcccCCCCEEEEEEE
Confidence 355689999999866665544333333334566666663
No 90
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=99.72 E-value=9.6e-18 Score=140.47 Aligned_cols=168 Identities=13% Similarity=0.138 Sum_probs=107.6
Q ss_pred ceEEEEecCCeEEEEEeccCCCC-ccCCCCcceeEeecCcEEEEEeccccchhhhhhhhcccc-------cccccccCCC
Q psy8777 37 VTSVAVKGVDTAVVATEKKVPDS-LVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARAGF-------DRHITIFSPE 108 (291)
Q Consensus 37 ~t~vgi~~~~~vv~a~~~~~~~~-l~~~~~~~ki~~i~~~~~~~~~G~~~D~~~~~~~~~~~y-------d~~~~~~sp~ 108 (291)
||+|||+++||||||+|+|.+.+ +..+++.+|||+|++|++|++||+.+|+|.+++.++.+. +.++++....
T Consensus 1 TT~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (199)
T 3unf_N 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAA 80 (199)
T ss_dssp CEEEEEECSSCEEEEECCCEEETTEEEESSCCCEEEEETTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred CeEEEEEeCCeEEEEECCcccCCceeEccccCceEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999998876 777788899999999999999999999999999998442 2222221111
Q ss_pred CchhhHHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEE-Eeecccc-cHHHHHHHHHHH
Q psy8777 109 GRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGC-VMTGMQA-DSRYQVQRARYE 186 (291)
Q Consensus 109 grl~qve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~-~~sG~~~-D~~~~~~~~~~e 186 (291)
..+-++-|.. .++....++.+. +++..+|+||. |+|.+ ...+.++ ++++...+..++
T Consensus 81 ~~l~~~l~~~------------~~p~~v~~lvaG-------~D~~~~p~ly~--p~G~~~~~~~~~~~Gsgs~~a~~~Le 139 (199)
T 3unf_N 81 NVVKNISYKY------------REDLLAHLIVAG-------WDQREGGQVYG--TMGGMLIRQPFTIGGSGSSYIYGYVD 139 (199)
T ss_dssp HHHHHHHHHT------------TTTCCCCEEEEE-------EETTTEEEEEE--CGGGCCEECSEEEEEGGGGGGHHHHH
T ss_pred HHHHHHHHhc------------CCCceEEEEEEE-------EeCCCCcEEEE--ECCCceecCCEEEEccCHHHHHHHHH
Confidence 1111111111 013333333333 44446799999 88863 2333332 344444444444
Q ss_pred HHHhHhhhCCCCCHHHHHHHHHHHHHHhhhcCcceeeeeeeeEE
Q psy8777 187 AASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILI 230 (291)
Q Consensus 187 ~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~p~~~~~li~ 230 (291)
. .++.+|+.+++.+.+.+.+.....+....+-.+++.++
T Consensus 140 ~-----~~~~~ms~eea~~la~~al~~~~~~d~~sg~~i~v~vi 178 (199)
T 3unf_N 140 A-----AYKPGMTPEECRRFTTNAITLAMNRDGSSGGVIYLVTI 178 (199)
T ss_dssp H-----HCCSSCCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEE
T ss_pred h-----hcCCCCCHHHHHHHHHHHHHHHHHhccccCCCeEEEEE
Confidence 4 24568999999986666664444443333445565555
No 91
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=99.71 E-value=1.2e-17 Score=144.42 Aligned_cols=83 Identities=76% Similarity=1.139 Sum_probs=77.9
Q ss_pred ccccccccccCCCCchhhHHHHHhhhcC-CceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEEeecccc
Q psy8777 96 AGFDRHITIFSPEGRLYQVEYAFKAINQ-GGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVMTGMQA 174 (291)
Q Consensus 96 ~~yd~~~~~~sp~grl~qve~~~~~~~~-g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~~sG~~~ 174 (291)
..||+++++|||+|||+|+|||++++++ |+ +++|+++++||||++|++.+++++..++.+||++|+++++++++|..+
T Consensus 7 ~~yd~~~t~fsp~Grl~QvEya~~av~~~Gt-t~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~a 85 (246)
T 1iru_A 7 AGFDRHITIFSPEGRLYQVEYAFKAINQGGL-TSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVMTGMTA 85 (246)
T ss_dssp CTTTTTSSCCCTTSCCHHHHHHHHHHHTTCC-EEEEEECSSEEEEEEECCCCCSSBCGGGCCSEEESSSSCEEEEEECHH
T ss_pred CCcCCCCccCCCCCeehHHHHHHHHHhcCCC-CEEEEEeCCEEEEEEeecCCCcccCCCccCceEEECCCEEEEEeccHH
Confidence 5799999999999999999999999999 76 999999999999999999988788777889999999999999999999
Q ss_pred cHHHH
Q psy8777 175 DSRYQ 179 (291)
Q Consensus 175 D~~~~ 179 (291)
|++.+
T Consensus 86 D~~~l 90 (246)
T 1iru_A 86 DSRSQ 90 (246)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98865
No 92
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=99.68 E-value=4.1e-17 Score=133.78 Aligned_cols=150 Identities=13% Similarity=0.056 Sum_probs=99.2
Q ss_pred ceEEEEecCCeEEEEEeccCCCC-ccCCCCcceeEee-cCcEEEEEeccccchhhhhhhhcccccccccccCCCCchhhH
Q psy8777 37 VTSVAVKGVDTAVVATEKKVPDS-LVDPKTVTNLYSL-TPTVGCVMTGMQADSRYQVQRARAGFDRHITIFSPEGRLYQV 114 (291)
Q Consensus 37 ~t~vgi~~~~~vv~a~~~~~~~~-l~~~~~~~ki~~i-~~~~~~~~~G~~~D~~~~~~~~~~~yd~~~~~~sp~grl~qv 114 (291)
+|+|||+++||||||+|+|.+.+ ++.+++.+||++| ++|++|++||+.+|++.++++++.+...+-. +.... -.
T Consensus 1 tT~vgi~~~dgVvlaaD~r~t~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~--~~~~~--~~ 76 (174)
T 1g3k_A 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQG--HLLKS--AV 76 (174)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTT--CHHHH--HH
T ss_pred CeEEEEEECCEEEEEECCCCccCCeeEeCCCCcEEEECCCCEEEEeCccHHHHHHHHHHHHHHHHHhcC--cHHHH--HH
Confidence 48999999999999999998875 7778888999999 9999999999999999999999854322110 00000 00
Q ss_pred HHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEEe-e---cccccHHHHHHHHHHHHHHh
Q psy8777 115 EYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVM-T---GMQADSRYQVQRARYEAASF 190 (291)
Q Consensus 115 e~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~~-s---G~~~D~~~~~~~~~~e~~~~ 190 (291)
+.+.....+.. .++...+++..| +|+||.+||+|.+.- . ..+.++++......+|....
T Consensus 77 ~l~~~~~~~~~-----~r~~~~~l~g~d------------~p~Ly~~d~~G~~~~~~~~~~~a~Gsgs~~a~~~le~~~~ 139 (174)
T 1g3k_A 77 ELAKDWRTDRA-----LRKLEAMLIVAD------------EKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVE 139 (174)
T ss_dssp HHHHHHHHSTT-----GGGCCCEEEEEC------------SSCEEEEETTTEEECCCTTCEEEESTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhccC-----cCcceEEEEEEC------------CCEEEEEcCCCcEEecCCCcEEEEcccHHHHHHHHHHhcc
Confidence 11222212211 123344444433 589999999997642 2 34455666666666665433
Q ss_pred HhhhCCCCCHHHHHH-HHHHHH
Q psy8777 191 KYKHGYSMPIDQLCN-RIADIS 211 (291)
Q Consensus 191 ~~~~~~~~s~~~l~~-~l~~~~ 211 (291)
. .+|+.++++. .|....
T Consensus 140 ~----~~mt~~~l~~~al~~a~ 157 (174)
T 1g3k_A 140 N----TELSAHEIVEKSLRIAG 157 (174)
T ss_dssp H----CCCCHHHHHHHHHHHHH
T ss_pred c----CCCCHHHHHHHHHHHHH
Confidence 1 3788888775 555444
No 93
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=99.68 E-value=2.3e-17 Score=135.96 Aligned_cols=152 Identities=16% Similarity=0.114 Sum_probs=99.5
Q ss_pred hcCCceEEEEecCCeEEEEEeccCCC-Cc-cCCCCcceeEee-cCcEEEEEeccccchhhhhhhhcccccccccccCCCC
Q psy8777 33 NQGGVTSVAVKGVDTAVVATEKKVPD-SL-VDPKTVTNLYSL-TPTVGCVMTGMQADSRYQVQRARAGFDRHITIFSPEG 109 (291)
Q Consensus 33 ~~g~~t~vgi~~~~~vv~a~~~~~~~-~l-~~~~~~~ki~~i-~~~~~~~~~G~~~D~~~~~~~~~~~yd~~~~~~sp~g 109 (291)
.+| +|+|||+++||||||+|+|.+. .+ +.+++.+||++| ++|++|++||+.+|++.++++++.+....- |
T Consensus 3 ~~G-tTivgi~~~dgVvlaaD~r~t~g~~~i~~~~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~y~------g 75 (180)
T 2z3b_A 3 FHA-TTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYN------G 75 (180)
T ss_dssp BCC-CCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTT------T
T ss_pred CCC-eEEEEEEECCEEEEEECCCccCCCceEecCCCCcEEEECCCCEEEEeCchHHHHHHHHHHHHHHHHHhc------C
Confidence 466 5999999999999999999887 57 788889999999 999999999999999999999985432211 1
Q ss_pred chhh--HHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEEe---ecccccHHHHHHHHH
Q psy8777 110 RLYQ--VEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVM---TGMQADSRYQVQRAR 184 (291)
Q Consensus 110 rl~q--ve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~~---sG~~~D~~~~~~~~~ 184 (291)
.+.+ .+.+...... .+.|+....++.+| +|+||.+||+|.+.- ...+.++.+......
T Consensus 76 ~~~~~~~~l~~~~~~~-----~~~rp~~~~~lvad------------~p~ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~ 138 (180)
T 2z3b_A 76 NLKRAAVELAKEWRSD-----KVLRKLEAMLIVMN------------QDTLLLVSGTGEVIEPDDGILAIGSGGNYALAA 138 (180)
T ss_dssp CHHHHHHHHHHHHHHC-----TTGGGCCCCEEEEC------------SSCEEEECTTCCEECCSSSEEEESTTHHHHHHH
T ss_pred ChHHHHHHHHHHHHhh-----hCcCcceEEEEEEc------------CCeEEEECCCCcEEEeCCCEEEECCCHHHHHHH
Confidence 1110 1111111111 12234444444432 589999999998542 333445666656555
Q ss_pred HHHHHhHhhhCCCCCHHHHHH-HHHHH
Q psy8777 185 YEAASFKYKHGYSMPIDQLCN-RIADI 210 (291)
Q Consensus 185 ~e~~~~~~~~~~~~s~~~l~~-~l~~~ 210 (291)
++...... +.+|+.+++++ .|...
T Consensus 139 le~~~~~~--~~~mt~eel~~~al~~a 163 (180)
T 2z3b_A 139 GRALKKHA--GESMSASEIARAALETA 163 (180)
T ss_dssp HHHHHHHH--GGGCCHHHHHHHHHHHH
T ss_pred HHHhhhcc--CCCCCHHHHHHHHHHHH
Confidence 55433211 01689999765 44333
No 94
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=99.63 E-value=3.4e-16 Score=127.96 Aligned_cols=148 Identities=15% Similarity=0.111 Sum_probs=97.7
Q ss_pred ceEEEEecCCeEEEEEeccCCC-CccCCCCcceeEee-cCcEEEEEeccccchhhhhhhhcccccccccccCCCCchhh-
Q psy8777 37 VTSVAVKGVDTAVVATEKKVPD-SLVDPKTVTNLYSL-TPTVGCVMTGMQADSRYQVQRARAGFDRHITIFSPEGRLYQ- 113 (291)
Q Consensus 37 ~t~vgi~~~~~vv~a~~~~~~~-~l~~~~~~~ki~~i-~~~~~~~~~G~~~D~~~~~~~~~~~yd~~~~~~sp~grl~q- 113 (291)
+|+|||+++||||||+|+|.+. .++.+++.+|||+| ++|++|++||+.+|+|.++++++.+...+- .++.+
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~------~~~~~~ 74 (171)
T 1m4y_A 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWG------GNLTKA 74 (171)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTT------TCHHHH
T ss_pred CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEeCCCCEEEEeCccHHHHHHHHHHHHHHHHHhc------ccHHHH
Confidence 5899999999999999999886 57777888999999 999999999999999999999985432211 11110
Q ss_pred -HHHHHhhhcCCceeEEEEecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEEe-e--cccccHHHHHHHHHHHHHH
Q psy8777 114 -VEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVM-T--GMQADSRYQVQRARYEAAS 189 (291)
Q Consensus 114 -ve~~~~~~~~g~~~~igi~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~~-s--G~~~D~~~~~~~~~~e~~~ 189 (291)
.+.+.....+.. .++....++.+| +|+||.+||.|.+.- . ..+.++++...+..++...
T Consensus 75 ~~~l~~~~~~~~~-----~~~~~~~~lv~D------------~p~Ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~ 137 (171)
T 1m4y_A 75 AVELAKDWRTDRV-----LRRLEALLLVAD------------KENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALL 137 (171)
T ss_dssp HHHHHHHHHHCTT-----GGGCCCEEEEEC------------SSCEEEECTTSCEECCSSSEEEESTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-----CCceEEEEEEEc------------CCEEEEECCCCCEEecCCCEEEECCcHHHHHHHHHHhc
Confidence 011111111111 123444444432 689999999997642 2 3445566666666665533
Q ss_pred hHhhhCCCCCHHHHHH-HHHHHH
Q psy8777 190 FKYKHGYSMPIDQLCN-RIADIS 211 (291)
Q Consensus 190 ~~~~~~~~~s~~~l~~-~l~~~~ 211 (291)
.. .+|+.++++. .+....
T Consensus 138 ~~----~~ms~~~l~~~al~~a~ 156 (171)
T 1m4y_A 138 RN----TDLSAREIVEKAMTIAG 156 (171)
T ss_dssp HH----CCCCHHHHHHHHHHHHH
T ss_pred cc----CCCCHHHHHHHHHHHHH
Confidence 21 3788877765 554444
No 95
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=99.12 E-value=8.9e-11 Score=102.04 Aligned_cols=90 Identities=6% Similarity=-0.003 Sum_probs=54.7
Q ss_pred EecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEE-eecccccHHHHHHHHHHHHHHhHhhhCC-CCCHHHHHHHHH
Q psy8777 131 VKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCV-MTGMQADSRYQVQRARYEAASFKYKHGY-SMPIDQLCNRIA 208 (291)
Q Consensus 131 i~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~-~sG~~~D~~~~~~~~~~e~~~~~~~~~~-~~s~~~l~~~l~ 208 (291)
.+|....+|.+. +++..+|+||.+||+|.+. ....+.+..+...+..++. .+.. +|+.+++++.+.
T Consensus 127 ~rP~~v~~lvaG-------~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~-----~~~~~~ms~eeA~~la~ 194 (261)
T 1iru_C 127 KRPFGVSLLYIG-------WDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQ-----DYKEGEMTLKSALALAI 194 (261)
T ss_dssp CCCCCEEEEEEE-------EETTTEEEEEEEETTTEEEECSEEEESTTTTHHHHHHHH-----HCCTTCCCHHHHHHHHH
T ss_pred cCcceEEEEEEE-------EeCCCCcEEEEECCCceEEeeeeEEeCcccHHHHHHHHH-----hhccCCCCHHHHHHHHH
Confidence 467777777665 5545689999999999863 1122223444444444443 3455 899999999766
Q ss_pred HHHHHhhhcCcceeeeeeeeEEEE
Q psy8777 209 DISQVYTQNAEMRPLGCSMILISY 232 (291)
Q Consensus 209 ~~~~~~~~~~~~~p~~~~~li~G~ 232 (291)
..+.....+....+..+++.++..
T Consensus 195 ~al~~~~~~d~~sg~~i~v~vi~~ 218 (261)
T 1iru_C 195 KVLNKTMDVSKLSAEKVEIATLTR 218 (261)
T ss_dssp HHHHHSSSCTTCCSTTCEEEEEEC
T ss_pred HHHHHHHhccCCCCCcEEEEEEEc
Confidence 666544343333445566666543
No 96
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=99.06 E-value=2.3e-10 Score=99.46 Aligned_cols=91 Identities=10% Similarity=0.144 Sum_probs=54.9
Q ss_pred EecccEEEEEeeccCCCcccCCCCcceEEEecCcEEEE-eecccccHHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHH
Q psy8777 131 VKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCV-MTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIAD 209 (291)
Q Consensus 131 i~~~~~vvl~~d~~~~~~l~~~~~~~kI~~i~~~~~~~-~sG~~~D~~~~~~~~~~e~~~~~~~~~~~~s~~~l~~~l~~ 209 (291)
.++....+|.+. +++ ++|+||.+||.|.+. ....+.+..+...+..++.....+ .+|+.+++++.+.+
T Consensus 125 ~RP~~v~~lvaG-------~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~---~~ms~eea~~la~~ 193 (263)
T 1iru_F 125 RRPYGVGLLIAG-------YDD-MGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEF---MECNLNELVKHGLR 193 (263)
T ss_dssp CCCCCEEEEEEE-------EET-TEEEEEEECSSSCEEEESEEEESTTHHHHHHHHHHHHHHH---TTCCHHHHHHHHHH
T ss_pred cccceEEEEEEE-------EcC-CCCEEEEECCCCCEEEeeEEEcCcccHHHHHHHHHHhccc---CCCCHHHHHHHHHH
Confidence 356766666654 443 689999999999753 223333455555555555432221 27999999997666
Q ss_pred HHHHhhhcC-cceeeeeeeeEEEE
Q psy8777 210 ISQVYTQNA-EMRPLGCSMILISY 232 (291)
Q Consensus 210 ~~~~~~~~~-~~~p~~~~~li~G~ 232 (291)
.+.....+. ...+..+++.++..
T Consensus 194 al~~~~~rd~~~sg~~iev~vi~~ 217 (263)
T 1iru_F 194 ALRETLPAEQDLTTKNVSIGIVGK 217 (263)
T ss_dssp HHHTTSCTTCCCCTTTEEEEEEET
T ss_pred HHHHHHhccccCCCCcEEEEEEEC
Confidence 664443333 13455667766643
No 97
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=47.36 E-value=13 Score=29.19 Aligned_cols=31 Identities=10% Similarity=0.025 Sum_probs=27.2
Q ss_pred eeeeCCCCcch-hhhHHHHHHhcCCceEEEEec
Q psy8777 13 ITIFSPEGRLY-QVEYAFKAINQGGVTSVAVKG 44 (291)
Q Consensus 13 ~~~fsp~g~~~-q~eya~~av~~g~~t~vgi~~ 44 (291)
+-+||+.||-- -||-|++|-++| .++|+|.+
T Consensus 81 vii~S~Sg~n~~~ie~A~~ake~G-~~vIaITs 112 (170)
T 3jx9_A 81 VLIFTPDTERSDLLASLARYDAWH-TPYSIITL 112 (170)
T ss_dssp EEEEESCSCCHHHHHHHHHHHHHT-CCEEEEES
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCC-CcEEEEeC
Confidence 44699999987 899999999999 59999986
No 98
>2yxo_A Histidinol phosphatase; metal-dependent, hydrolase; 1.60A {Thermus thermophilus} PDB: 2yz5_A 2z4g_A
Probab=41.46 E-value=14 Score=30.65 Aligned_cols=30 Identities=17% Similarity=0.122 Sum_probs=25.5
Q ss_pred eeeCCCCcchhhhHHHHHHhcCCceEEEEec
Q psy8777 14 TIFSPEGRLYQVEYAFKAINQGGVTSVAVKG 44 (291)
Q Consensus 14 ~~fsp~g~~~q~eya~~av~~g~~t~vgi~~ 44 (291)
|+||+||..---|++.+|.++| .+.|+++-
T Consensus 8 t~~S~DG~~~~ee~v~~A~~~G-l~~iaiTD 37 (267)
T 2yxo_A 8 TPLCGHAEGHPEAYLEEARAKG-LKGVVFTD 37 (267)
T ss_dssp CGGGSSCCSCHHHHHHHHHHTT-CSEEEEEE
T ss_pred cCCCCCCCCCHHHHHHHHHHcC-CCEEEEcC
Confidence 4699999988889999999998 68888763
No 99
>3rj2_X ORF158L protein, putative uncharacterized protein; histone 3, protein binding; 2.20A {Singapore grouper iridovirus}
Probab=27.86 E-value=23 Score=25.96 Aligned_cols=16 Identities=25% Similarity=0.472 Sum_probs=12.8
Q ss_pred CccceeeeeCCCCcch
Q psy8777 8 GFDRHITIFSPEGRLY 23 (291)
Q Consensus 8 ~yd~~~~~fsp~g~~~ 23 (291)
+-|...|.|+|+||+.
T Consensus 54 gm~h~vTfF~~~Grl~ 69 (138)
T 3rj2_X 54 FMRHRVTFFNATGRYI 69 (138)
T ss_dssp TCEEEEEEECTTSCEE
T ss_pred cceeEEEEEcCCCcEE
Confidence 3467889999999875
No 100
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=25.75 E-value=20 Score=24.20 Aligned_cols=18 Identities=17% Similarity=0.519 Sum_probs=13.9
Q ss_pred ccceeeeeCCCCcchhhh
Q psy8777 9 FDRHITIFSPEGRLYQVE 26 (291)
Q Consensus 9 yd~~~~~fsp~g~~~q~e 26 (291)
|...+.+|.|+|.++.++
T Consensus 4 ~~~~i~v~tP~G~~~~lp 21 (78)
T 3hvz_A 4 APEEVFVFTPKGDVISLP 21 (78)
T ss_dssp --CEEEEECTTSCEEEEE
T ss_pred cCceEEEECCCCCEEEec
Confidence 566789999999999855
No 101
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=24.40 E-value=1e+02 Score=19.61 Aligned_cols=35 Identities=17% Similarity=0.272 Sum_probs=27.4
Q ss_pred EEecCCchHHHHHHHHhc--cCCCCCCHHHHHHHHHhhC
Q psy8777 255 VSVGVKTTEANSYLEKKF--KKKTNYTGDETIQLAISCL 291 (291)
Q Consensus 255 ~a~G~gs~~~~~~Le~~~--~~~~~~t~~eai~l~~~~l 291 (291)
.+.|+....+...+++.. .+ +++.+|.|+.+++.|
T Consensus 25 ~aLGY~~~ea~kav~~v~~~~~--~~~~e~lIr~ALk~L 61 (62)
T 1ixs_A 25 AALGFKEAQARAVVLDLLAQNP--KARAQDLIKEALKRL 61 (62)
T ss_dssp HHTTCCHHHHHHHHHHHHHHCT--TCCHHHHHHHHHTTC
T ss_pred HHcCCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHc
Confidence 357888888888888764 34 689999999988754
No 102
>3s0r_A De novo designed helical assembly; interacts with single walled nanotube (SWNT), de novo protei; 2.45A {Artificial gene}
Probab=21.54 E-value=38 Score=17.58 Aligned_cols=11 Identities=36% Similarity=0.685 Sum_probs=8.1
Q ss_pred hhHHHHHHhcC
Q psy8777 25 VEYAFKAINQG 35 (291)
Q Consensus 25 ~eya~~av~~g 35 (291)
+|||+.|.++.
T Consensus 7 leyaqqaleka 17 (30)
T 3s0r_A 7 LEYAQQALEKA 17 (30)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 68888887653
No 103
>1m65_A Hypothetical protein YCDX; structural genomics, beta-alpha-barrel, metallo-enzyme, STRU function project, S2F, unknown function; 1.57A {Escherichia coli} SCOP: c.6.3.1 PDB: 1m68_A 1pb0_A
Probab=20.89 E-value=51 Score=26.66 Aligned_cols=30 Identities=17% Similarity=0.207 Sum_probs=23.7
Q ss_pred eeCCCCcchhhhHHHHHHhcCCceEEEEecC
Q psy8777 15 IFSPEGRLYQVEYAFKAINQGGVTSVAVKGV 45 (291)
Q Consensus 15 ~fsp~g~~~q~eya~~av~~g~~t~vgi~~~ 45 (291)
+||++|..---|++.+|.++| .+.|+++--
T Consensus 11 ~~Sd~g~~~~~e~v~~A~~~G-l~~iaiTDH 40 (245)
T 1m65_A 11 VASTHAYSTLSDYIAQAKQKG-IKLFAITDH 40 (245)
T ss_dssp TTSTTCCCCHHHHHHHHHHHT-CCEEEEEEE
T ss_pred CCCCCCCCcHHHHHHHHHHCC-CCEEEECCC
Confidence 488877755568999999998 788888743
No 104
>1eoq_A GAG polyprotein capsid protein P27; virus/viral protein; NMR {Rous sarcoma virus - prague C} SCOP: a.28.3.1
Probab=20.22 E-value=1.2e+02 Score=21.24 Aligned_cols=28 Identities=11% Similarity=0.097 Sum_probs=24.6
Q ss_pred chHHHHHHHHhccCCCCCCHHHHHHHHHhh
Q psy8777 261 TTEANSYLEKKFKKKTNYTGDETIQLAISC 290 (291)
Q Consensus 261 s~~~~~~Le~~~~~~~~~t~~eai~l~~~~ 290 (291)
+..++.+|+..+.+ .-|++|.++.+++|
T Consensus 45 NPdCk~iLkal~g~--~~tl~em~~yi~~~ 72 (96)
T 1eoq_A 45 QPDIQQLIRTAPST--LTTPGEIIKYVLDR 72 (96)
T ss_dssp CHHHHHHHHHCCSC--CCSHHHHHHHHHHH
T ss_pred CHHHHHHHHccCCC--CCCHHHHHHHHHHH
Confidence 45689999998888 99999999999887
Done!