RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8777
(291 letters)
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Length = 246
Score = 299 bits (768), Expect = e-103
Identities = 141/198 (71%), Positives = 168/198 (84%)
Query: 94 ARAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPK 153
+ AGFDRHITIFSPEGRLYQVEYAFKAINQGG+TSVAV+G D AV+ T+KKVPD L+D
Sbjct: 5 SSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSS 64
Query: 154 TVTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQV 213
TVT+L+ +T +GCVMTGM ADSR QVQRARYEAA++KYK+GY +P+D LC RIADISQV
Sbjct: 65 TVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQV 124
Query: 214 YTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFK 273
YTQNAEMRPLGC MILI DE +GP +YK DPAGYYC FKA + GVK TE+ S+LEKK K
Sbjct: 125 YTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVK 184
Query: 274 KKTNYTGDETIQLAISCL 291
KK ++T ++T++ AI+CL
Sbjct: 185 KKFDWTFEQTVETAITCL 202
Score = 159 bits (405), Expect = 4e-48
Identities = 75/95 (78%), Positives = 84/95 (88%)
Query: 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSL 60
MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGG+TSVAV+G D AV+ T+KKVPD L
Sbjct: 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKL 60
Query: 61 VDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRAR 95
+D TVT+L+ +T +GCVMTGM ADSR QVQRAR
Sbjct: 61 LDSSTVTHLFKITENIGCVMTGMTADSRSQVQRAR 95
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G*
1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G*
3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G*
3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Length = 243
Score = 295 bits (757), Expect = e-101
Identities = 103/201 (51%), Positives = 137/201 (68%), Gaps = 5/201 (2%)
Query: 96 AGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTV 155
AG+DRHITIFSPEGRLYQVEYAFKA NQ + S+AV+G D VV ++KKVPD L+DP TV
Sbjct: 1 AGYDRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTV 60
Query: 156 TNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYT 215
+ ++ ++ T+G V+ G D+R RA+ EAA F+YK+GY MP D L R+A++SQ+YT
Sbjct: 61 SYIFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYT 120
Query: 216 QNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKKK 275
Q A MRPLG + +S DE GP IYKTDPAGYY +KA + G K E + LE FKK
Sbjct: 121 QRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKKS 180
Query: 276 T-----NYTGDETIQLAISCL 291
+ ++ ++ AI+ +
Sbjct: 181 KIDHINEESWEKVVEFAITHM 201
Score = 149 bits (379), Expect = 3e-44
Identities = 51/89 (57%), Positives = 67/89 (75%)
Query: 7 AGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTV 66
AG+DRHITIFSPEGRLYQVEYAFKA NQ + S+AV+G D VV ++KKVPD L+DP TV
Sbjct: 1 AGYDRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTV 60
Query: 67 TNLYSLTPTVGCVMTGMQADSRYQVQRAR 95
+ ++ ++ T+G V+ G D+R RA+
Sbjct: 61 SYIFCISRTIGMVVNGPIPDARNAALRAK 89
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Length = 248
Score = 291 bits (747), Expect = 1e-99
Identities = 71/195 (36%), Positives = 110/195 (56%), Gaps = 1/195 (0%)
Query: 97 GFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVT 156
+DR IT+FSP+G L+QVEYA +A+ +G T+V V+G D V+ EKK L D +TV
Sbjct: 2 SYDRAITVFSPDGHLFQVEYAQEAVKKGS-TAVGVRGRDIVVLGVEKKSVAKLQDERTVR 60
Query: 157 NLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQ 216
+ +L V G+ AD+R + RAR E S + + ++ + IA + Q YTQ
Sbjct: 61 KICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQ 120
Query: 217 NAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKKKT 276
+ RP G S +++ +D + P +Y+TDP+G Y ++KA ++G +LEK + +
Sbjct: 121 SNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEA 180
Query: 277 NYTGDETIQLAISCL 291
T D TI+L I L
Sbjct: 181 IETDDLTIKLVIKAL 195
Score = 142 bits (361), Expect = 2e-41
Identities = 38/88 (43%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Query: 8 GFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVT 67
+DR IT+FSP+G L+QVEYA +A+ +G T+V V+G D V+ EKK L D +TV
Sbjct: 2 SYDRAITVFSPDGHLFQVEYAQEAVKKGS-TAVGVRGRDIVVLGVEKKSVAKLQDERTVR 60
Query: 68 NLYSLTPTVGCVMTGMQADSRYQVQRAR 95
+ +L V G+ AD+R + RAR
Sbjct: 61 KICALDDNVCMAFAGLTADARIVINRAR 88
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Length = 233
Score = 286 bits (734), Expect = 7e-98
Identities = 67/198 (33%), Positives = 110/198 (55%), Gaps = 4/198 (2%)
Query: 94 ARAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPK 153
A G+ +T FSP G+L Q+EYA A+ G SV +K + V+ATEKK L D +
Sbjct: 1 AERGYSFSLTTFSPSGKLVQIEYALAAVAGGA-PSVGIKAANGVVLATEKKQKSILYDER 59
Query: 154 TVTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQV 213
+V + +T +G V +GM D R V RAR A + + +P QL R+A + Q
Sbjct: 60 SVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQE 119
Query: 214 YTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFK 273
YTQ+ +RP G S+++ ++E P ++++DP+G Y ++KA ++G ++LEK++
Sbjct: 120 YTQSGGVRPFGVSLLICGWNE-GRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYN 178
Query: 274 KKTNYTGDETIQLAISCL 291
+ + ++ I AI L
Sbjct: 179 E--DLELEDAIHTAILTL 194
Score = 146 bits (370), Expect = 4e-43
Identities = 36/91 (39%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 5 SSAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPK 64
+ G+ +T FSP G+L Q+EYA A+ G SV +K + V+ATEKK L D +
Sbjct: 1 AERGYSFSLTTFSPSGKLVQIEYALAAVAGGA-PSVGIKAANGVVLATEKKQKSILYDER 59
Query: 65 TVTNLYSLTPTVGCVMTGMQADSRYQVQRAR 95
+V + +T +G V +GM D R V RAR
Sbjct: 60 SVHKVEPITKHIGLVYSGMGPDYRVLVHRAR 90
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B
1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A*
2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A*
3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Length = 250
Score = 282 bits (723), Expect = 6e-96
Identities = 67/197 (34%), Positives = 110/197 (55%), Gaps = 4/197 (2%)
Query: 96 AGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTV 155
+ +T FSP G+L Q++YA A+ QG TS+ +K + V+ATEKK L +T+
Sbjct: 3 DRYSFSLTTFSPSGKLGQIDYALTAVKQGV-TSLGIKATNGVVIATEKKSSSPLAMSETL 61
Query: 156 TNLYSLTPTVGCVMTGMQADSRYQVQRARYEA-ASFKYKHGYSMPIDQLCNRIADISQVY 214
+ + LTP +G V +GM D R V ++R A S+K +G P L + +A I Q
Sbjct: 62 SKVSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEA 121
Query: 215 TQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKK 274
TQ+ +RP G S+++ +DE G +Y+ DP+G Y +KA ++G + A ++LEK++
Sbjct: 122 TQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWND 181
Query: 275 KTNYTGDETIQLAISCL 291
++ I +A+ L
Sbjct: 182 --ELELEDAIHIALLTL 196
Score = 143 bits (364), Expect = 5e-42
Identities = 34/90 (37%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 6 SAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKT 65
+ + +T FSP G+L Q++YA A+ QG TS+ +K + V+ATEKK L +T
Sbjct: 2 TDRYSFSLTTFSPSGKLGQIDYALTAVKQGV-TSLGIKATNGVVIATEKKSSSPLAMSET 60
Query: 66 VTNLYSLTPTVGCVMTGMQADSRYQVQRAR 95
++ + LTP +G V +GM D R V ++R
Sbjct: 61 LSKVSLLTPDIGAVYSGMGPDYRVLVDKSR 90
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F*
1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F*
3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F*
3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Length = 244
Score = 279 bits (715), Expect = 7e-95
Identities = 64/197 (32%), Positives = 98/197 (49%), Gaps = 3/197 (1%)
Query: 96 AGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTV 155
G+D ++FSP+GR +QVEYA KA+ G TS+ +K D V A EK + L+ P+
Sbjct: 2 TGYDLSNSVFSPDGRNFQVEYAVKAVENGT-TSIGIKCNDGVVFAVEKLITSKLLVPQKN 60
Query: 156 TNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYT 215
+ + +GCV +G+ D R+ V R R EAASFK + +PI +R+ Q +T
Sbjct: 61 VKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHT 120
Query: 216 QNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKKK 275
+RP G S I D+ G +Y +P+G Y +K + G A + LEK
Sbjct: 121 LYNSVRPFGVSTIFGGVDK-NGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHH 179
Query: 276 T-NYTGDETIQLAISCL 291
+ E ++ A +
Sbjct: 180 PEGLSAREAVKQAAKII 196
Score = 142 bits (360), Expect = 2e-41
Identities = 34/89 (38%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 7 AGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTV 66
G+D ++FSP+GR +QVEYA KA+ G TS+ +K D V A EK + L+ P+
Sbjct: 2 TGYDLSNSVFSPDGRNFQVEYAVKAVENGT-TSIGIKCNDGVVFAVEKLITSKLLVPQKN 60
Query: 67 TNLYSLTPTVGCVMTGMQADSRYQVQRAR 95
+ + +GCV +G+ D R+ V R R
Sbjct: 61 VKIQVVDRHIGCVYSGLIPDGRHLVNRGR 89
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal
nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO
MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G*
3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 3bdm_F* 1fnt_G* 2zcy_F*
Length = 288
Score = 280 bits (719), Expect = 7e-95
Identities = 64/198 (32%), Positives = 98/198 (49%), Gaps = 3/198 (1%)
Query: 95 RAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKT 154
G+D ++FSP+GR +QVEYA KA+ G TS+ +K D V A EK + L+ P+
Sbjct: 5 GTGYDLSNSVFSPDGRNFQVEYAVKAVENGT-TSIGIKCNDGVVFAVEKLITSKLLVPQK 63
Query: 155 VTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVY 214
+ + +GCV +G+ D R+ V R R EAASFK + +PI +R+ Q +
Sbjct: 64 NVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAH 123
Query: 215 TQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKK 274
T +RP G S I D+ G +Y +P+G Y +K + G A + LEK
Sbjct: 124 TLYNSVRPFGVSTIFGGVDK-NGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDH 182
Query: 275 KT-NYTGDETIQLAISCL 291
+ E ++ A +
Sbjct: 183 HPEGLSAREAVKQAAKII 200
Score = 145 bits (368), Expect = 3e-42
Identities = 35/95 (36%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Query: 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSL 60
M+ G+D ++FSP+GR +QVEYA KA+ G TS+ +K D V A EK + L
Sbjct: 1 MT-SIGTGYDLSNSVFSPDGRNFQVEYAVKAVENGT-TSIGIKCNDGVVFAVEKLITSKL 58
Query: 61 VDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRAR 95
+ P+ + + +GCV +G+ D R+ V R R
Sbjct: 59 LVPQKNVKIQVVDRHIGCVYSGLIPDGRHLVNRGR 93
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Length = 241
Score = 275 bits (707), Expect = 9e-94
Identities = 54/203 (26%), Positives = 112/203 (55%), Gaps = 9/203 (4%)
Query: 94 ARAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPK 153
R+ +DR + FSPEGRL+QVEY +AI G T++ ++ + +A EK++ L++P
Sbjct: 4 TRSEYDRGVNTFSPEGRLFQVEYDIEAIKLGS-TAIGIQTSEGVCLAVEKRITSPLMEPS 62
Query: 154 TVTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQV 213
++ + + +GC M+G+ AD++ + +AR E + + + +M ++ + +++++
Sbjct: 63 SIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQ 122
Query: 214 YTQN-----AEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYL 268
+ + A RP G +++ DE +GP ++ DP+G + A ++G + A S L
Sbjct: 123 FGEEDADPGAMSRPFGVALLFGGVDE-KGPQLFHMDPSGTFVQCDARAIGSASEGAQSSL 181
Query: 269 EKKFKKKTNYTGDETIQLAISCL 291
++ + K + T E I+ ++ L
Sbjct: 182 QELYHK--SMTLKEAIKSSLIIL 202
Score = 141 bits (359), Expect = 3e-41
Identities = 30/91 (32%), Positives = 57/91 (62%), Gaps = 1/91 (1%)
Query: 5 SSAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPK 64
+ + +DR + FSPEGRL+QVEY +AI G T++ ++ + +A EK++ L++P
Sbjct: 4 TRSEYDRGVNTFSPEGRLFQVEYDIEAIKLGS-TAIGIQTSEGVCLAVEKRITSPLMEPS 62
Query: 65 TVTNLYSLTPTVGCVMTGMQADSRYQVQRAR 95
++ + + +GC M+G+ AD++ + +AR
Sbjct: 63 SIEKIVEIDAHIGCAMSGLIADAKTLIDKAR 93
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Length = 263
Score = 275 bits (706), Expect = 3e-93
Identities = 53/198 (26%), Positives = 100/198 (50%), Gaps = 4/198 (2%)
Query: 94 ARAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPK 153
R +D +T++SP+GR++Q+EYA +A+ QG +V +K AV+ K+ L
Sbjct: 2 FRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGS-ATVGLKSKTHAVLVALKRAQSELAAH- 59
Query: 154 TVTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQV 213
+ + +G + G+ AD+R R E ++ +P+ +L + I +Q+
Sbjct: 60 -QKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQI 118
Query: 214 YTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFK 273
TQ RP G +++ YD+ GP I++T P+ Y +A+S+G ++ A +YLE+
Sbjct: 119 PTQRYGRRPYGVGLLIAGYDD-MGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMS 177
Query: 274 KKTNYTGDETIQLAISCL 291
+ +E ++ + L
Sbjct: 178 EFMECNLNELVKHGLRAL 195
Score = 135 bits (341), Expect = 2e-38
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Query: 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSL 60
M R +D +T++SP+GR++Q+EYA +A+ QG +V +K AV+ K+ L
Sbjct: 1 MFRN---QYDNDVTVWSPQGRIHQIEYAMEAVKQGS-ATVGLKSKTHAVLVALKRAQSEL 56
Query: 61 VDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRAR 95
+ + +G + G+ AD+R R
Sbjct: 57 AAH--QKKILHVDNHIGISIAGLTADARLLCNFMR 89
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Length = 254
Score = 272 bits (698), Expect = 4e-92
Identities = 61/196 (31%), Positives = 102/196 (52%), Gaps = 3/196 (1%)
Query: 96 AGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTV 155
G+D + FSP+GR++QVEYA KA+ T++ ++ D V EK V L + +
Sbjct: 5 TGYDLSASTFSPDGRVFQVEYAMKAVENSS-TAIGIRCKDGVVFGVEKLVLSKLYEEGSN 63
Query: 156 TNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYT 215
L+++ VG + G+ AD+R AR EA++F+ GY++P+ L +R+A YT
Sbjct: 64 KRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYT 123
Query: 216 QNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKKK 275
+ +RP GCS +L SY N+G +Y DP+G + ++G A + +EK K
Sbjct: 124 LYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMK- 182
Query: 276 TNYTGDETIQLAISCL 291
T + ++ +
Sbjct: 183 -EMTCRDIVKEVAKII 197
Score = 130 bits (329), Expect = 8e-37
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 4 GSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDP 63
G+D + FSP+GR++QVEYA KA+ T++ ++ D V EK V L +
Sbjct: 2 SIGTGYDLSASTFSPDGRVFQVEYAMKAVENSS-TAIGIRCKDGVVFGVEKLVLSKLYEE 60
Query: 64 KTVTNLYSLTPTVGCVMTGMQADSRYQVQRAR 95
+ L+++ VG + G+ AD+R AR
Sbjct: 61 GSNKRLFNVDRHVGMAVAGLLADARSLADIAR 92
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator
11S, hydrolase-HYD activator complex; 1.90A
{Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A
1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A
3jse_A 3jtl_A
Length = 233
Score = 269 bits (691), Expect = 2e-91
Identities = 68/200 (34%), Positives = 112/200 (56%), Gaps = 4/200 (2%)
Query: 92 QRARAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVD 151
Q+ + + R IT+FSP+GRL+QVEYA +A+ +G T++ +K + ++ ++KKV L++
Sbjct: 2 QQGQMAYSRAITVFSPDGRLFQVEYAREAVKKGS-TALGMKFANGVLLISDKKVRSRLIE 60
Query: 152 PKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADIS 211
++ + + V V +G+ AD+R V AR A K +G + I+ L R+AD
Sbjct: 61 QNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQM 120
Query: 212 QVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKK 271
Q YTQ +RP G S+I D+ GP ++ DPAG +KA ++G S+LE++
Sbjct: 121 QQYTQYGGVRPYGVSLIFAGIDQI-GPRLFDCDPAGTINEYKATAIGSGKDAVVSFLERE 179
Query: 272 FKKKTNYTGDETIQLAISCL 291
+K+ N E + L I L
Sbjct: 180 YKE--NLPEKEAVTLGIKAL 197
Score = 130 bits (330), Expect = 3e-37
Identities = 33/95 (34%), Positives = 58/95 (61%), Gaps = 2/95 (2%)
Query: 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSL 60
M +G + R IT+FSP+GRL+QVEYA +A+ +G T++ +K + ++ ++KKV L
Sbjct: 1 MQQGQM-AYSRAITVFSPDGRLFQVEYAREAVKKGS-TALGMKFANGVLLISDKKVRSRL 58
Query: 61 VDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRAR 95
++ ++ + + V V +G+ AD+R V AR
Sbjct: 59 IEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFAR 93
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase,
protease, threonine protease; 4.10A {Methanocaldococcus
jannaschii}
Length = 264
Score = 269 bits (689), Expect = 1e-90
Identities = 67/198 (33%), Positives = 117/198 (59%), Gaps = 4/198 (2%)
Query: 94 ARAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPK 153
+ +DR IT+FSPEGRLYQVEYA +A+ +G T++ + D V+A ++++ LV +
Sbjct: 8 PPSAYDRAITVFSPEGRLYQVEYAREAVRRGT-TAIGIACKDGVVLAVDRRITSKLVKIR 66
Query: 154 TVTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQV 213
++ ++ + V +G+ AD+R + RAR EA ++ +G + I+ L +I DI Q
Sbjct: 67 SIEKIFQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQA 126
Query: 214 YTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFK 273
YTQ+ +RP G S+++ D+ +++TDP+G +KA ++G LEK+++
Sbjct: 127 YTQHGGVRPFGVSLLIAGIDK-NEARLFETDPSGALIEYKATAIGSGRPVVMELLEKEYR 185
Query: 274 KKTNYTGDETIQLAISCL 291
+ T DE ++LAI+ L
Sbjct: 186 D--DITLDEGLELAITAL 201
Score = 132 bits (335), Expect = 1e-37
Identities = 34/95 (35%), Positives = 58/95 (61%), Gaps = 1/95 (1%)
Query: 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSL 60
M + +DR IT+FSPEGRLYQVEYA +A+ +G T++ + D V+A ++++ L
Sbjct: 4 MQMVPPSAYDRAITVFSPEGRLYQVEYAREAVRRGT-TAIGIACKDGVVLAVDRRITSKL 62
Query: 61 VDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRAR 95
V +++ ++ + V +G+ AD+R + RAR
Sbjct: 63 VKIRSIEKIFQIDDHVAAATSGLVADARVLIDRAR 97
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Length = 261
Score = 268 bits (686), Expect = 3e-90
Identities = 65/197 (32%), Positives = 104/197 (52%), Gaps = 3/197 (1%)
Query: 96 AGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTV 155
+D TIFSPEGRLYQVEYA +AI G T + + D ++A E++ L+D
Sbjct: 3 RRYDSRTTIFSPEGRLYQVEYAMEAIGHAG-TCLGILANDGVLLAAERRNIHKLLDEVFF 61
Query: 156 TN-LYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVY 214
+ +Y L + C + G+ +D+ R A + ++ +P +QL + DI Q Y
Sbjct: 62 SEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAY 121
Query: 215 TQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKK 274
TQ RP G S++ I +D++ G +Y++DP+G Y +KA +G + A S L++ +K+
Sbjct: 122 TQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKE 181
Query: 275 KTNYTGDETIQLAISCL 291
T + LAI L
Sbjct: 182 G-EMTLKSALALAIKVL 197
Score = 125 bits (315), Expect = 1e-34
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Query: 6 SAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKT 65
S +D TIFSPEGRLYQVEYA +AI G T + + D ++A E++ L+D
Sbjct: 2 SRRYDSRTTIFSPEGRLYQVEYAMEAIGHAG-TCLGILANDGVLLAAERRNIHKLLDEVF 60
Query: 66 VTN-LYSLTPTVGCVMTGMQADSRYQVQRAR 95
+ +Y L + C + G+ +D+ R
Sbjct: 61 FSEKIYKLNEDMACSVAGITSDANVLTNELR 91
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A
{Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Length = 246
Score = 267 bits (684), Expect = 4e-90
Identities = 59/200 (29%), Positives = 113/200 (56%), Gaps = 5/200 (2%)
Query: 92 QRARAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVD 151
+ G+DR IT+FSP+GRL+QVEYA +A+ +G T++ +K + ++ +K+V L++
Sbjct: 2 HLPQMGYDRAITVFSPDGRLFQVEYAREAVKRGA-TAIGIKCKEGVILIADKRVGSKLLE 60
Query: 152 PKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADIS 211
T+ +Y + + +G+ AD+R + RAR EA + + + + +L +I D
Sbjct: 61 KDTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDIPITVKELAKKICDFK 120
Query: 212 QVYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKK 271
Q YTQ +RP G S+++ + E P +Y+TDP+G +KA ++G+ + EK+
Sbjct: 121 QQYTQYGGVRPFGVSLLIAGVN--EVPKLYETDPSGALLEYKATAIGMGRMAVTEFFEKE 178
Query: 272 FKKKTNYTGDETIQLAISCL 291
++ + + D+ + L + +
Sbjct: 179 YRD--DLSFDDAMVLGLVAM 196
Score = 127 bits (322), Expect = 8e-36
Identities = 33/95 (34%), Positives = 58/95 (61%), Gaps = 2/95 (2%)
Query: 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSL 60
M G+DR IT+FSP+GRL+QVEYA +A+ +G T++ +K + ++ +K+V L
Sbjct: 1 MHLPQM-GYDRAITVFSPDGRLFQVEYAREAVKRGA-TAIGIKCKEGVILIADKRVGSKL 58
Query: 61 VDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRAR 95
++ T+ +Y + + +G+ AD+R + RAR
Sbjct: 59 LEKDTIEKIYKIDEHICAATSGLVADARVLIDRAR 93
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C*
1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C*
3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C*
3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Length = 241
Score = 266 bits (683), Expect = 4e-90
Identities = 63/198 (31%), Positives = 113/198 (57%), Gaps = 4/198 (2%)
Query: 97 GFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPK-TV 155
G+DR ++IFSP+G ++QVEYA +A+ +G +V VKG + V+ E++ L D + T
Sbjct: 1 GYDRALSIFSPDGHIFQVEYALEAVKRGT-CAVGVKGKNCVVLGCERRSTLKLQDTRITP 59
Query: 156 TNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYT 215
+ + + V +G+ ADSR +++AR EA S + + ++ L +A + Q YT
Sbjct: 60 SKVSKIDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYT 119
Query: 216 QNAEMRPLGCSMILISYDENE-GPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKK 274
Q+ +RP G S ++ +D + P +Y+T+P+G Y S+ A ++G + +LEK + +
Sbjct: 120 QSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDR 179
Query: 275 K-TNYTGDETIQLAISCL 291
K T +E ++L + L
Sbjct: 180 KEPPATVEECVKLTVRSL 197
Score = 125 bits (316), Expect = 7e-35
Identities = 32/89 (35%), Positives = 55/89 (61%), Gaps = 2/89 (2%)
Query: 8 GFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPK-TV 66
G+DR ++IFSP+G ++QVEYA +A+ +G +V VKG + V+ E++ L D + T
Sbjct: 1 GYDRALSIFSPDGHIFQVEYALEAVKRGT-CAVGVKGKNCVVLGCERRSTLKLQDTRITP 59
Query: 67 TNLYSLTPTVGCVMTGMQADSRYQVQRAR 95
+ + + V +G+ ADSR +++AR
Sbjct: 60 SKVSKIDSHVVLSFSGLNADSRILIEKAR 88
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D*
1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D*
3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D*
3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Length = 242
Score = 265 bits (679), Expect = 2e-89
Identities = 49/199 (24%), Positives = 103/199 (51%), Gaps = 9/199 (4%)
Query: 99 DRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNL 158
DR ++ FSPEGRL+QVEY+ +AI G T++ + + V+ EK+ L++ ++ +
Sbjct: 1 DRGVSTFSPEGRLFQVEYSLEAIKLGS-TAIGIATKEGVVLGVEKRATSPLLESDSIEKI 59
Query: 159 YSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNA 218
+ +GC M+G+ AD+R ++ AR A + + + ++ L + D++ + + A
Sbjct: 60 VEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGA 119
Query: 219 E------MRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKF 272
RP G ++++ +D ++G ++ +P+G + + A ++G + A + L ++
Sbjct: 120 SGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEW 179
Query: 273 KKKTNYTGDETIQLAISCL 291
+ T E L + L
Sbjct: 180 HS--SLTLKEAELLVLKIL 196
Score = 128 bits (325), Expect = 3e-36
Identities = 30/86 (34%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Query: 10 DRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNL 69
DR ++ FSPEGRL+QVEY+ +AI G T++ + + V+ EK+ L++ ++ +
Sbjct: 1 DRGVSTFSPEGRLFQVEYSLEAIKLGS-TAIGIATKEGVVLGVEKRATSPLLESDSIEKI 59
Query: 70 YSLTPTVGCVMTGMQADSRYQVQRAR 95
+ +GC M+G+ AD+R ++ AR
Sbjct: 60 VEIDRHIGCAMSGLTADARSMIEHAR 85
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E*
1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E*
3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E*
3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Length = 233
Score = 264 bits (677), Expect = 3e-89
Identities = 50/199 (25%), Positives = 89/199 (44%), Gaps = 6/199 (3%)
Query: 95 RAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKT 154
R +D FSP GRL+QVEYA +AI QG +V ++ AV+ K+ D L
Sbjct: 2 RNNYDGDTVTFSPTGRLFQVEYALEAIKQGS-VTVGLRSNTHAVLVALKRNADELSS--Y 58
Query: 155 VTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVY 214
+ +G + G+ D+R R + + +++ + + D +Q
Sbjct: 59 QKKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKN 118
Query: 215 TQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKK 274
TQ+ RP G +++I YD+ G + + P+G ++G ++ A +YLE+
Sbjct: 119 TQSYGGRPYGVGLLIIGYDK-SGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDT 177
Query: 275 --KTNYTGDETIQLAISCL 291
K + DE I+ + +
Sbjct: 178 FIKIDGNPDELIKAGVEAI 196
Score = 120 bits (304), Expect = 2e-33
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 8 GFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVT 67
+D FSP GRL+QVEYA +AI QG +V ++ AV+ K+ D L
Sbjct: 4 NYDGDTVTFSPTGRLFQVEYALEAIKQGS-VTVGLRSNTHAVLVALKRNADELSS--YQK 60
Query: 68 NLYSLTPTVGCVMTGMQADSRYQVQRAR 95
+ +G + G+ D+R R
Sbjct: 61 KIIKCDEHMGLSLAGLAPDARVLSNYLR 88
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B*
1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B*
3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B*
3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Length = 244
Score = 263 bits (673), Expect = 2e-88
Identities = 71/199 (35%), Positives = 113/199 (56%), Gaps = 4/199 (2%)
Query: 94 ARAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPK 153
+D TIFSPEGRLYQVEYA ++I+ G T++ + D V+A E+KV +L++
Sbjct: 1 GSRRYDSRTTIFSPEGRLYQVEYALESISHAG-TAIGIMASDGIVLAAERKVTSTLLEQD 59
Query: 154 T-VTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQ 212
T LY L + + G+ AD+ + AR A ++ + +P++ L R++DI Q
Sbjct: 60 TSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQ 119
Query: 213 VYTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKF 272
YTQ+ +RP G S I YD+ G +Y ++P+G Y +KA+SVG T+ A + L+ +
Sbjct: 120 GYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDY 179
Query: 273 KKKTNYTGDETIQLAISCL 291
K + D+ I+LA+ L
Sbjct: 180 KD--DMKVDDAIELALKTL 196
Score = 119 bits (300), Expect = 2e-32
Identities = 36/91 (39%), Positives = 53/91 (58%), Gaps = 2/91 (2%)
Query: 6 SAGFDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKT 65
S +D TIFSPEGRLYQVEYA ++I+ G T++ + D V+A E+KV +L++ T
Sbjct: 2 SRRYDSRTTIFSPEGRLYQVEYALESISHAG-TAIGIMASDGIVLAAERKVTSTLLEQDT 60
Query: 66 -VTNLYSLTPTVGCVMTGMQADSRYQVQRAR 95
LY L + + G+ AD+ + AR
Sbjct: 61 STEKLYKLNDKIAVAVAGLTADAEILINTAR 91
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome
endopeptidase comple mycobacterium tuberculosis,
hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis}
PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D
3hf9_A 3mfe_D
Length = 248
Score = 104 bits (261), Expect = 6e-27
Identities = 33/192 (17%), Positives = 68/192 (35%), Gaps = 17/192 (8%)
Query: 106 SPEGRLYQ-VEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPT 164
SPE + + E A K I + + VA+ + E +++ + L
Sbjct: 8 SPEQAMRERSELARKGIARAK-SVVALAYAGGVLFVAENP-------SRSLQKISELYDR 59
Query: 165 VGCVMTGMQADSRYQVQRARYEAASFKYKHGY-SMPIDQLCNRIADISQVYTQNAEMRPL 223
VG G + + A + Y + + QL N A + +P
Sbjct: 60 VGFAAAGKFNEFDNLRRGGIQFADTRGYAYDRRDVTGRQLANVYAQTLGT-IFTEQAKPY 118
Query: 224 GCSMI---LISYDENEGPLIYKTDPAG-YYCSFKAVSVGVKTTEANSYLEKKFKKKTNYT 279
+ + Y E + P +Y+ G V +G T + L++ + + N +
Sbjct: 119 EVELCVAEVAHYGETKRPELYRITYDGSIADEPHFVVMGGTTEPIANALKESYAE--NAS 176
Query: 280 GDETIQLAISCL 291
+ +++A++ L
Sbjct: 177 LTDALRIAVAAL 188
Score = 56.1 bits (135), Expect = 2e-09
Identities = 15/93 (16%), Positives = 28/93 (30%), Gaps = 9/93 (9%)
Query: 17 SPEGRLYQ-VEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPT 75
SPE + + E A K I + + VA+ + E +++ + L
Sbjct: 8 SPEQAMRERSELARKGIARAK-SVVALAYAGGVLFVAENP-------SRSLQKISELYDR 59
Query: 76 VGCVMTGMQADSRYQVQRARAGFDRHITIFSPE 108
VG G + + D +
Sbjct: 60 VGFAAAGKFNEFDNLRRGGIQFADTRGYAYDRR 92
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, RH erythropolis, hydrolase;
2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB:
2h6j_A 1q5r_A
Length = 259
Score = 100 bits (251), Expect = 2e-25
Identities = 29/193 (15%), Positives = 64/193 (33%), Gaps = 19/193 (9%)
Query: 106 SPEGRLYQ-VEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPT 164
S E + E A K I +G + V + D + E + + L
Sbjct: 8 SAEQIMRDRSELARKGIARGR-SVVVLTFRDGVLFVAENP-------STALHKVSELYDR 59
Query: 165 VGCVMTGMQADSRYQVQRARYEAASFKYKHG-YSMPIDQLCNRIAD-ISQVYTQNAEMRP 222
+G G + + A Y + + L N A + ++T+ + +P
Sbjct: 60 LGFAAVGKYNEFENLRRAGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTE--QPKP 117
Query: 223 LGCSMI---LISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTE-ANSYLEKKFKKKTNY 278
+ + + P +Y+ G + V TTE + + + ++ +
Sbjct: 118 YEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRA--DL 175
Query: 279 TGDETIQLAISCL 291
+ + +A++ L
Sbjct: 176 DLEAAVGIAVNAL 188
Score = 48.5 bits (115), Expect = 7e-07
Identities = 14/93 (15%), Positives = 25/93 (26%), Gaps = 9/93 (9%)
Query: 17 SPEGRLYQ-VEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVDPKTVTNLYSLTPT 75
S E + E A K I +G + V + D + E + + L
Sbjct: 8 SAEQIMRDRSELARKGIARGR-SVVVLTFRDGVLFVAENP-------STALHKVSELYDR 59
Query: 76 VGCVMTGMQADSRYQVQRARAGFDRHITIFSPE 108
+G G + + D +
Sbjct: 60 LGFAAVGKYNEFENLRRAGIVHADMRGYSYDRR 92
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug
development, protein degradation, hydrolase-hydrolase
inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB:
3unh_H
Length = 234
Score = 93.5 bits (233), Expect = 5e-23
Identities = 31/163 (19%), Positives = 63/163 (38%), Gaps = 9/163 (5%)
Query: 127 TSVAVKGVDTAVVATEKKVP-DSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARY 185
T + D ++ + + DS+V K+ ++ + P + C G+ AD+ + A
Sbjct: 2 TIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAAS 61
Query: 186 EAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDP 245
+ G + + + Y +G S+++ D GP +Y+ P
Sbjct: 62 KMELHALSTGREPRVATVTRILRQTLFRYQG-----HVGASLVVGGVDL-NGPQLYEVHP 115
Query: 246 AGYYCSFKAVSVGVKTTEANSYLEKKFKKKTNYTGDETIQLAI 288
G Y ++G A + LE +F+ N T + +L +
Sbjct: 116 HGSYSRLPFTALGSGQGAAVALLEDRFQP--NMTLEAAQELLV 156
Score = 41.1 bits (97), Expect = 2e-04
Identities = 13/80 (16%), Positives = 31/80 (38%), Gaps = 12/80 (15%)
Query: 38 TSVAVKGVDTAVVATEKKVP-DSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARA 96
T + D ++ + + DS+V K+ ++ + P + C G+ AD+ + A +
Sbjct: 2 TIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAAS 61
Query: 97 GFDRHITIFSPEGRLYQVEY 116
+ L+ +
Sbjct: 62 -----------KMELHALST 70
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation,
N-terminal nucleophilic HYDR 19S regulatory particle;
HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB:
3nzw_H* 3nzx_H*
Length = 261
Score = 89.7 bits (223), Expect = 3e-21
Identities = 38/198 (19%), Positives = 69/198 (34%), Gaps = 13/198 (6%)
Query: 96 AGFDRHITIFSPEGRLYQVEYAF-KAINQGGVTSVAVKGVDTAVVATEKKV-PDSLVDPK 153
AG + L + + KA + G T V VK + V+A + + +V K
Sbjct: 2 AGLS--FDNYQRNNFLAENSHTQPKATSTGT-TIVGVKFNNGVVIAADTRSTQGPIVADK 58
Query: 154 TVTNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQV 213
L+ ++P + C G AD+ Q + +
Sbjct: 59 NCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFK 118
Query: 214 YTQNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFK 273
Y +G +I+ D G ++ G +S+G + A + LE +K
Sbjct: 119 Y-----QGHIGAYLIVAGVDP-TGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWK 172
Query: 274 KKTNYTGDETIQLAISCL 291
+ + T +E I+LA +
Sbjct: 173 Q--DLTKEEAIKLASDAI 188
Score = 39.6 bits (93), Expect = 6e-04
Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 5/92 (5%)
Query: 7 AGFDRHITIFSPEGRLYQVEYAF-KAINQGGVTSVAVKGVDTAVVATEKKV-PDSLVDPK 64
AG + L + + KA + G T V VK + V+A + + +V K
Sbjct: 2 AGLS--FDNYQRNNFLAENSHTQPKATSTGT-TIVGVKFNNGVVIAADTRSTQGPIVADK 58
Query: 65 TVTNLYSLTPTVGCVMTGMQADSRYQVQRARA 96
L+ ++P + C G AD+ Q +
Sbjct: 59 NCAKLHRISPKIWCAGAGTAADTEAVTQLIGS 90
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H*
1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H*
2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H*
3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Length = 222
Score = 84.2 bits (209), Expect = 1e-19
Identities = 32/166 (19%), Positives = 59/166 (35%), Gaps = 9/166 (5%)
Query: 127 TSVAVKGVDTAVVATEKKV-PDSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARY 185
T V VK + V+A + + +V K L+ ++P + C G AD+ Q
Sbjct: 2 TIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGS 61
Query: 186 EAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDP 245
+ + Y +G +I+ D G ++
Sbjct: 62 NIELHSLYTSREPRVVSALQMLKQHLFKY-----QGHIGAYLIVAGVDP-TGSHLFSIHA 115
Query: 246 AGYYCSFKAVSVGVKTTEANSYLEKKFKKKTNYTGDETIQLAISCL 291
G +S+G + A + LE +K+ + T +E I+LA +
Sbjct: 116 HGSTDVGYYLSLGSGSLAAMAVLESHWKQ--DLTKEEAIKLASDAI 159
Score = 36.1 bits (84), Expect = 0.007
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 38 TSVAVKGVDTAVVATEKKV-PDSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARA 96
T V VK + V+A + + +V K L+ ++P + C G AD+ Q +
Sbjct: 2 TIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGS 61
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator
11S, hydrolase-HYD activator complex; 1.90A
{Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H
1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Length = 217
Score = 83.4 bits (207), Expect = 2e-19
Identities = 33/168 (19%), Positives = 71/168 (42%), Gaps = 9/168 (5%)
Query: 125 GVTSVAVKGVDTAVVATEKKV-PDSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRA 183
G T+V + D ++ATE++V ++ + K L+ + G + G+ D++ V+
Sbjct: 8 GTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYM 67
Query: 184 RYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKT 243
+ E ++ + +MPI+ + ++++ P +++ D P ++
Sbjct: 68 KAELELYRLQRRVNMPIEAVATLLSNMLNQVK----YMPYMVQLLVGGID--TAPHVFSI 121
Query: 244 DPAGYYCSFKAVSVGVKTTEANSYLEKKFKKKTNYTGDETIQLAISCL 291
D AG S G + LE ++ + T DE + L I +
Sbjct: 122 DAAGGSVEDIYASTGSGSPFVYGVLESQYSE--KMTVDEGVDLVIRAI 167
Score = 34.9 bits (81), Expect = 0.016
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 36 GVTSVAVKGVDTAVVATEKKV-PDSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRA 94
G T+V + D ++ATE++V ++ + K L+ + G + G+ D++ V+
Sbjct: 8 GTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYM 67
Query: 95 RA 96
+A
Sbjct: 68 KA 69
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_H* 3une_H
Length = 234
Score = 83.9 bits (208), Expect = 2e-19
Identities = 30/166 (18%), Positives = 57/166 (34%), Gaps = 9/166 (5%)
Query: 127 TSVAVKGVDTAVVATEKKVP-DSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARY 185
T V D V+ + + +V K + ++ ++P + C G AD+ Q
Sbjct: 2 TIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISS 61
Query: 186 EAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDP 245
G + + + Y +G +++L D GP +Y P
Sbjct: 62 NLELHSLSTGRLPRVVTANRMLKQMLFRYRG-----YIGAALVLGGVDV-TGPHLYSIYP 115
Query: 246 AGYYCSFKAVSVGVKTTEANSYLEKKFKKKTNYTGDETIQLAISCL 291
G V++G + A + E KF+ + +E L +
Sbjct: 116 HGSTDKLPYVTMGSGSLAAMAVFEDKFRP--DMEEEEAKNLVSEAI 159
Score = 34.6 bits (80), Expect = 0.021
Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 38 TSVAVKGVDTAVVATEKKVP-DSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARA 96
T V D V+ + + +V K + ++ ++P + C G AD+ Q +
Sbjct: 2 TIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISS 61
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation,
N-terminal nucleophilic HYDR 19S regulatory particle;
HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB:
3nzw_K* 3nzx_K*
Length = 287
Score = 80.9 bits (200), Expect = 6e-18
Identities = 31/195 (15%), Positives = 68/195 (34%), Gaps = 11/195 (5%)
Query: 98 FDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKV-PDSLVDPKTVT 156
+ + + + R + G T++A + +VA + + + V +TV
Sbjct: 52 PQQFLRAHTDDSRNPDCKIKIAH----GTTTLAFRFQGGIIVAVDSRATAGNWVASQTVK 107
Query: 157 NLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYTQ 216
+ + P + M G AD ++ + + + + + ++++ Y
Sbjct: 108 KVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAASKILSNLVYQYK- 166
Query: 217 NAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKKKT 276
L ++ Y EGP IY D G VG T A L+ +K
Sbjct: 167 ---GAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKW-- 221
Query: 277 NYTGDETIQLAISCL 291
+ + ++ + L +
Sbjct: 222 DLSVEDALYLGKRSI 236
Score = 35.1 bits (81), Expect = 0.016
Identities = 14/89 (15%), Positives = 33/89 (37%), Gaps = 5/89 (5%)
Query: 9 FDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKV-PDSLVDPKTVT 67
+ + + + R + G T++A + +VA + + + V +TV
Sbjct: 52 PQQFLRAHTDDSRNPDCKIKIAH----GTTTLAFRFQGGIIVAVDSRATAGNWVASQTVK 107
Query: 68 NLYSLTPTVGCVMTGMQADSRYQVQRARA 96
+ + P + M G AD ++ +
Sbjct: 108 KVIEINPFLLGTMAGGAADCQFWETWLGS 136
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, hydrolase; 3.10A {Rhodococcus
erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Length = 294
Score = 78.1 bits (192), Expect = 7e-17
Identities = 36/175 (20%), Positives = 68/175 (38%), Gaps = 11/175 (6%)
Query: 125 GVTSVAVKGVDTAVVATEKKVP-DSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRA 183
G T VA+ ++A +++ +L+ + V +Y + G + V+
Sbjct: 65 GTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLF 124
Query: 184 RYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYD-----ENEGP 238
E ++ G + D NR+A + + A M+ L +L+ YD E+
Sbjct: 125 AVELEHYEKIEGVPLTFDGKANRLASMVRGN-LGAAMQGLAVVPLLVGYDLDADDESRAG 183
Query: 239 LIYKTDPAGYYCSFKA--VSVGVKTTEANSYLEKKFKKKTNYTGDETIQLAISCL 291
I D G +A +VG + A S L+K + + + ++ AI L
Sbjct: 184 RIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSP--DSDEETALRAAIESL 236
Score = 35.0 bits (80), Expect = 0.024
Identities = 10/67 (14%), Positives = 25/67 (37%), Gaps = 1/67 (1%)
Query: 36 GVTSVAVKGVDTAVVATEKKVP-DSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRA 94
G T VA+ ++A +++ +L+ + V +Y + G + V+
Sbjct: 65 GTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLF 124
Query: 95 RAGFDRH 101
+ +
Sbjct: 125 AVELEHY 131
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, RH erythropolis, hydrolase;
2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Length = 235
Score = 75.3 bits (185), Expect = 3e-16
Identities = 34/172 (19%), Positives = 65/172 (37%), Gaps = 9/172 (5%)
Query: 127 TSVAVKGVDTAVVATEKKVP-DSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARY 185
T VA+ ++A +++ +L+ + V +Y + G + V+
Sbjct: 2 TIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAV 61
Query: 186 EAASFKYKHGYSMPIDQLCNRIADISQVY----TQNAEMRPLGCSMILISYDENEGPLIY 241
E ++ G + D NR+A + + Q + PL L + DE+ I
Sbjct: 62 ELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIV 121
Query: 242 KTDPAGYYCSFKA--VSVGVKTTEANSYLEKKFKKKTNYTGDETIQLAISCL 291
D G +A +VG + A S L+K + + + ++ AI L
Sbjct: 122 SYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSP--DSDEETALRAAIESL 171
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L
1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K*
2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K*
3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Length = 212
Score = 74.2 bits (183), Expect = 5e-16
Identities = 29/166 (17%), Positives = 61/166 (36%), Gaps = 7/166 (4%)
Query: 127 TSVAVKGVDTAVVATEKKV-PDSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARY 185
T++A + +VA + + + V +TV + + P + M G AD ++
Sbjct: 2 TTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGS 61
Query: 186 EAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDP 245
+ + + + + ++++ Y L ++ Y EGP IY D
Sbjct: 62 QCRLHELREKERISVAAASKILSNLVYQYK----GAGLSMGTMICGYTRKEGPTIYYVDS 117
Query: 246 AGYYCSFKAVSVGVKTTEANSYLEKKFKKKTNYTGDETIQLAISCL 291
G VG T A L+ +K + + ++ + L +
Sbjct: 118 DGTRLKGDIFCVGSGQTFAYGVLDSNYKW--DLSVEDALYLGKRSI 161
Score = 29.9 bits (68), Expect = 0.82
Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 38 TSVAVKGVDTAVVATEKKV-PDSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARA 96
T++A + +VA + + + V +TV + + P + M G AD ++ +
Sbjct: 2 TTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGS 61
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Length = 204
Score = 72.6 bits (179), Expect = 1e-15
Identities = 28/166 (16%), Positives = 65/166 (39%), Gaps = 8/166 (4%)
Query: 127 TSVAVKGVDTAVVATEKKV-PDSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARY 185
T++A K +VA + + + + +TV + + P + M G AD + +
Sbjct: 2 TTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLAR 61
Query: 186 EAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDP 245
+ ++ ++ + + +A++ Y L ++ +D+ GP +Y D
Sbjct: 62 QCRIYELRNKERISVAAASKLLANMVYQYK----GMGLSMGTMICGWDK-RGPGLYYVDS 116
Query: 246 AGYYCSFKAVSVGVKTTEANSYLEKKFKKKTNYTGDETIQLAISCL 291
G S SVG + A +++ + + ++ LA +
Sbjct: 117 EGNRISGATFSVGSGSVYAYGVMDRGYSY--DLEVEQAYDLARRAI 160
Score = 29.5 bits (67), Expect = 1.1
Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 38 TSVAVKGVDTAVVATEKKV-PDSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARA 96
T++A K +VA + + + + +TV + + P + M G AD + +
Sbjct: 2 TTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLAR 61
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB:
3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H*
3h6i_C 3h6f_C 3hf9_H 3mfe_H
Length = 291
Score = 73.4 bits (180), Expect = 3e-15
Identities = 35/175 (20%), Positives = 68/175 (38%), Gaps = 11/175 (6%)
Query: 125 GVTSVAVKGVDTAVVATEKKVP-DSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRA 183
G T VA+K V+A +++ +++ + V +Y + G A + +
Sbjct: 57 GTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLY 116
Query: 184 RYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYD-----ENEGP 238
E ++ G + NR+A + + A M+ L +L YD
Sbjct: 117 AVELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAA-MQGLLALPLLAGYDIHASDPQSAG 175
Query: 239 LIYKTDPAGYYCSFKA--VSVGVKTTEANSYLEKKFKKKTNYTGDETIQLAISCL 291
I D AG + + +VG + A S ++K + + GD +++A+ L
Sbjct: 176 RIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQ--VTDGDSGLRVAVEAL 228
Score = 33.4 bits (76), Expect = 0.072
Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
Query: 36 GVTSVAVKGVDTAVVATEKKVP-DSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRA 94
G T VA+K V+A +++ +++ + V +Y + G A + +
Sbjct: 57 GTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLY 116
Query: 95 RA 96
Sbjct: 117 AV 118
Score = 70.7 bits (174), Expect = 1e-14
Identities = 12/167 (7%), Positives = 23/167 (13%), Gaps = 8/167 (4%)
Query: 127 TSVAVKGVDTAVVATEKKV-PDSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARY 185
V T + T +G + + ++
Sbjct: 3 HMQMVPPSAYDRAITVFSPEGRLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSKL 62
Query: 186 EAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDP 245
K + + E I
Sbjct: 63 VKIRSIEKIFQIDDHVAAATSGLVADARVL----IDRARLEAQIYRLTYGEEISIEMLAK 118
Query: 246 AGYYCSFKA-VSVGVKTTEANSYLEKKFKKKTNYTGDETIQLAISCL 291
GV+ + + K ET
Sbjct: 119 KICDIKQAYTQHGGVRPFGVSLLIAGIDKN--EARLFETDPSGALIE 163
Score = 27.2 bits (61), Expect = 5.3
Identities = 4/60 (6%), Positives = 10/60 (16%), Gaps = 1/60 (1%)
Query: 38 TSVAVKGVDTAVVATEKKV-PDSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARA 96
V T + T +G + + ++
Sbjct: 3 HMQMVPPSAYDRAITVFSPEGRLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSKL 62
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_N* 3une_N
Length = 205
Score = 69.9 bits (172), Expect = 1e-14
Identities = 25/166 (15%), Positives = 57/166 (34%), Gaps = 8/166 (4%)
Query: 127 TSVAVKGVDTAVVATEKKV-PDSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARY 185
T +AV+ V+ + + S + + L + + C +G AD++ Y
Sbjct: 2 TIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTY 61
Query: 186 EAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDP 245
+ + + + ++ Y L +I+ +D EG +Y
Sbjct: 62 QLGFHSIELNEPPLVHTAASLFKEMCYRY-----REDLMAGIIIAGWDPQEGGQVYSVPM 116
Query: 246 AGYYCSFKAVSVGVKTTEANSYLEKKFKKKTNYTGDETIQLAISCL 291
G G ++ Y++ +++ T +E +Q + L
Sbjct: 117 GGMMVRQSFAIGGSGSSYIYGYVDATYRE--GMTKEECLQFTANAL 160
Score = 26.8 bits (60), Expect = 6.9
Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Query: 38 TSVAVKGVDTAVVATEKKV-PDSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARA 96
T +AV+ V+ + + S + + L + + C +G AD++
Sbjct: 2 TIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTY 61
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M*
1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L*
2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L*
3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Length = 222
Score = 69.7 bits (171), Expect = 2e-14
Identities = 32/184 (17%), Positives = 62/184 (33%), Gaps = 21/184 (11%)
Query: 125 GVTSVAVKGVDTAVVATEKKV-PDSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRA 183
G T + + G D AV+A + + D ++ + ++ + G AD V+R
Sbjct: 9 GGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRF 68
Query: 184 RYEAASFKYKH-GYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYK 242
+ + + H + I+ I + P I+ DE+ +Y
Sbjct: 69 KNSVKWYHFDHNDKKLSINSAARNIQHLLYGKRF----FPYYVHTIIAGLDEDGKGAVYS 124
Query: 243 TDPAGYYCSFKAVSVGVKTTEANSYLEKKFKKKTNY---------------TGDETIQLA 287
DP G Y + + G + +L+ + K Y + +E I+L
Sbjct: 125 FDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYLSVEEVIKLV 184
Query: 288 ISCL 291
Sbjct: 185 RDSF 188
Score = 32.7 bits (75), Expect = 0.087
Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 36 GVTSVAVKGVDTAVVATEKKV-PDSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRA 94
G T + + G D AV+A + + D ++ + ++ + G AD V+R
Sbjct: 9 GGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRF 68
Query: 95 RA 96
+
Sbjct: 69 KN 70
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Length = 201
Score = 67.2 bits (165), Expect = 1e-13
Identities = 26/166 (15%), Positives = 62/166 (37%), Gaps = 5/166 (3%)
Query: 127 TSVAVKGVDTAVVATEKKV-PDSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARY 185
+ ++G D +VA+++ + + ++ ++ + + G D+ + +
Sbjct: 3 YLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQK 62
Query: 186 EAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDP 245
+K ++GY + N + P +++L YDE+EGP +Y D
Sbjct: 63 NVQLYKMRNGYELSPTAAANFTRRN--LADCLRSRTPYHVNLLLAGYDEHEGPALYYMDY 120
Query: 246 AGYYCSFKAVSVGVKTTEANSYLEKKFKKKTNYTGDETIQLAISCL 291
+ G S L++ + + + ++L CL
Sbjct: 121 LAALAKAPFAAHGYGAFLTLSILDRYYTP--TISRERAVELLRKCL 164
Score = 27.2 bits (61), Expect = 6.1
Identities = 6/50 (12%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 38 TSVAVKGVDTAVVATEKKV-PDSLVDPKTVTNLYSLTPTVGCVMTGMQAD 86
+ ++G D +VA+++ + + ++ ++ + + G D
Sbjct: 3 YLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGD 52
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K
1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J*
2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J*
3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Length = 198
Score = 66.1 bits (162), Expect = 3e-13
Identities = 25/167 (14%), Positives = 60/167 (35%), Gaps = 6/167 (3%)
Query: 127 TSVAVKGVDTAVVATEKKV-PDSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARY 185
+ ++ D+ ++A+ K V V + L+P G D+ + +
Sbjct: 3 IILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQA 62
Query: 186 EAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENE-GPLIYKTD 244
+ + Y + + + + + RP ++++ YD+ + P +Y+ D
Sbjct: 63 NIQLYSIREDYELSPQAVSSFVRQE--LAKSIRSRRPYQVNVLIGGYDKKKNKPELYQID 120
Query: 245 PAGYYCSFKAVSVGVKTTEANSYLEKKFKKKTNYTGDETIQLAISCL 291
G + G S L+ ++ + T +E + L C+
Sbjct: 121 YLGTKVELPYGAHGYSGFYTFSLLDHHYRP--DMTTEEGLDLLKLCV 165
Score = 27.6 bits (62), Expect = 4.6
Identities = 9/53 (16%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 38 TSVAVKGVDTAVVATEKKV-PDSLVDPKTVTNLYSLTPTVGCVMTGMQADSRY 89
+ ++ D+ ++A+ K V V + L+P G D+
Sbjct: 3 IILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQ 55
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A
{Archaeoglobus fulgidus} SCOP: d.153.1.4
Length = 202
Score = 66.0 bits (162), Expect = 4e-13
Identities = 34/167 (20%), Positives = 66/167 (39%), Gaps = 9/167 (5%)
Query: 127 TSVAVKGVDTAVVATEKKV-PDSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARY 185
T+V + D V+ATEK+ + + K +Y + + G D+++ + +
Sbjct: 2 TTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKI 61
Query: 186 EAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDP 245
EA ++ + + + +++ Y P +++ D EG IY DP
Sbjct: 62 EANLYEIRRERKPTVRAIATLTSNLLNSYR----YFPYLVQLLIGGIDS-EGKSIYSIDP 116
Query: 246 AG-YYCSFKAVSVGVKTTEANSYLEKKFKKKTNYTGDETIQLAISCL 291
G V+ G + A LE +F DE ++LA+ +
Sbjct: 117 IGGAIEEKDIVATGSGSLTAYGVLEDRFTP--EIGVDEAVELAVRAI 161
Score = 28.7 bits (65), Expect = 1.5
Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 38 TSVAVKGVDTAVVATEKKV-PDSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARA 96
T+V + D V+ATEK+ + + K +Y + + G D+++ + +
Sbjct: 2 TTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKI 61
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N*
3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N*
1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N*
3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Length = 205
Score = 64.9 bits (159), Expect = 7e-13
Identities = 26/168 (15%), Positives = 58/168 (34%), Gaps = 9/168 (5%)
Query: 125 GVTSVAVKGVDTAVVATEKKV-PDSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRA 183
G + +AV D ++ + + + + + L + + C +G AD++
Sbjct: 9 GASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIV 68
Query: 184 RYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKT 243
+Y + ++G + ++ L +I+ YD+ +Y
Sbjct: 69 QYHLELYTSQYGTPSTET-AASVFKELCYEN-----KDNLTAGIIVAGYDDKNKGEVYTI 122
Query: 244 DPAGYYCSFKAVSVGVKTTEANSYLEKKFKKKTNYTGDETIQLAISCL 291
G G +T Y +K F++ N + +ET+ L
Sbjct: 123 PLGGSVHKLPYAIAGSGSTFIYGYCDKNFRE--NMSKEETVDFIKHSL 168
Score = 28.0 bits (63), Expect = 2.9
Identities = 9/62 (14%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
Query: 36 GVTSVAVKGVDTAVVATEKKV-PDSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRA 94
G + +AV D ++ + + + + + L + + C +G AD++
Sbjct: 9 GASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIV 68
Query: 95 RA 96
+
Sbjct: 69 QY 70
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease,
NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP:
d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M*
3nzj_M* 3nzw_M* 3nzx_M*
Length = 266
Score = 65.1 bits (159), Expect = 2e-12
Identities = 25/176 (14%), Positives = 66/176 (37%), Gaps = 11/176 (6%)
Query: 125 GVTSVAVKGVDTAVVATEKKV-PDSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRA 183
G + +++K + ++A + SL+ V L + ++G +D ++ +
Sbjct: 41 GTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLL 100
Query: 184 RYEAASFKYK-----HGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGP 238
+ Y ++ + +A + +Y + ++M PL ++I+ N
Sbjct: 101 KDLVTENAYDNPLADAEEALEPSYIFEYLATV--MYQRRSKMNPLWNAIIVAGVQSNGDQ 158
Query: 239 LIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKKKTNY---TGDETIQLAISCL 291
+ + G S ++ G AN L K ++++ T + ++ +
Sbjct: 159 FLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAM 214
Score = 31.2 bits (71), Expect = 0.33
Identities = 11/87 (12%), Positives = 33/87 (37%), Gaps = 3/87 (3%)
Query: 36 GVTSVAVKGVDTAVVATEKKV-PDSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQ-- 92
G + +++K + ++A + SL+ V L + ++G +D ++ +
Sbjct: 41 GTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLL 100
Query: 93 RARAGFDRHITIFSPEGRLYQVEYAFK 119
+ + + + + Y F+
Sbjct: 101 KDLVTENAYDNPLADAEEALEPSYIFE 127
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Length = 213
Score = 63.8 bits (156), Expect = 2e-12
Identities = 29/175 (16%), Positives = 56/175 (32%), Gaps = 12/175 (6%)
Query: 125 GVTSVAVKGVDTAVVATEKKV-PDSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRA 183
G T +A+ G D A+VA++ ++ + + Y LT +G D +
Sbjct: 9 GGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKII 68
Query: 184 RYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKT 243
+K+ + +M + ++ I P I+ DE +Y
Sbjct: 69 EARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFF----PYYVYNIIGGLDEEGKGAVYSF 124
Query: 244 DPAGYYCSFKAVSVGVKTTEANSYLEKKFKK-------KTNYTGDETIQLAISCL 291
DP G Y + G + L+ + + D ++L
Sbjct: 125 DPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVF 179
Score = 30.3 bits (69), Expect = 0.54
Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Query: 36 GVTSVAVKGVDTAVVATEKKV-PDSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRA 94
G T +A+ G D A+VA++ ++ + + Y LT +G D +
Sbjct: 9 GGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKII 68
Query: 95 RA 96
A
Sbjct: 69 EA 70
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N*
1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M*
2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M*
3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Length = 233
Score = 63.1 bits (154), Expect = 5e-12
Identities = 24/176 (13%), Positives = 65/176 (36%), Gaps = 11/176 (6%)
Query: 125 GVTSVAVKGVDTAVVATEKKV-PDSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRA 183
G + +++K + ++A + SL+ V L + ++G +D ++ +
Sbjct: 8 GTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLL 67
Query: 184 RYEAASFKYK-----HGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGP 238
+ Y ++ + +A + +Y + ++M PL ++I+ N
Sbjct: 68 KDLVTENAYDNPLADAEEALEPSYIFEYLATV--MYQRRSKMNPLWNAIIVAGVQSNGDQ 125
Query: 239 LIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKKKTNYTG---DETIQLAISCL 291
+ + G S ++ G AN L K ++++ + ++ +
Sbjct: 126 FLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAM 181
Score = 28.1 bits (63), Expect = 3.5
Identities = 11/87 (12%), Positives = 33/87 (37%), Gaps = 3/87 (3%)
Query: 36 GVTSVAVKGVDTAVVATEKKV-PDSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQ-- 92
G + +++K + ++A + SL+ V L + ++G +D ++ +
Sbjct: 8 GTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLL 67
Query: 93 RARAGFDRHITIFSPEGRLYQVEYAFK 119
+ + + + + Y F+
Sbjct: 68 KDLVTENAYDNPLADAEEALEPSYIFE 94
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Length = 205
Score = 61.4 bits (150), Expect = 1e-11
Identities = 24/170 (14%), Positives = 57/170 (33%), Gaps = 9/170 (5%)
Query: 125 GVTSVAVKGVDTAVVATEKKV-PDSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRA 183
G +A+KG + +A +++ + + ++ + + + G+ D + QR
Sbjct: 8 GGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRL 67
Query: 184 RYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYD-ENEGPLIYK 242
++ ++ K G + L + +A++ P ++ D + P I
Sbjct: 68 KFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFG----PYYTEPVIAGLDPKTFKPFICS 123
Query: 243 TDPAGYYCSFKAVSV-GVKTTEANSYLEKKFKKKTNYTGDETIQLAISCL 291
D G V G + E ++ N D + +
Sbjct: 124 LDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEP--NMDPDHLFETISQAM 171
Score = 28.3 bits (64), Expect = 2.4
Identities = 9/62 (14%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 36 GVTSVAVKGVDTAVVATEKKV-PDSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRA 94
G +A+KG + +A +++ + + ++ + + + G+ D + QR
Sbjct: 8 GGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRL 67
Query: 95 RA 96
+
Sbjct: 68 KF 69
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug
development, protein degradation, hydrolase-hydrolase
inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB:
3unh_N
Length = 199
Score = 61.1 bits (149), Expect = 2e-11
Identities = 31/166 (18%), Positives = 62/166 (37%), Gaps = 9/166 (5%)
Query: 127 TSVAVKGVDTAVVATEKKV-PDSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARY 185
T +AV+ VV ++ +V + V + L L + C ++G AD++ A Y
Sbjct: 2 TIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAY 61
Query: 186 EAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYKTDP 245
+ + + N + +IS Y L +I+ +D+ EG +Y
Sbjct: 62 QLELHGLELEEPPLVLAAANVVKNISYKY-----REDLLAHLIVAGWDQREGGQVY-GTM 115
Query: 246 AGYYCSFKAVSVGVKTTEANSYLEKKFKKKTNYTGDETIQLAISCL 291
G G ++ Y++ +K T +E + + +
Sbjct: 116 GGMLIRQPFTIGGSGSSYIYGYVDAAYKP--GMTPEECRRFTTNAI 159
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I*
1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I*
3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I*
3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Length = 204
Score = 57.2 bits (139), Expect = 4e-10
Identities = 26/170 (15%), Positives = 54/170 (31%), Gaps = 10/170 (5%)
Query: 125 GVTSVAVKGVDTAVVATEKKV-PDSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRA 183
G VA+ G D +A + ++ SL ++ +TG+ D +
Sbjct: 8 GGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYGHVFLG-ITGLATDVTTLNEMF 66
Query: 184 RYEAASFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEG-PLIYK 242
RY+ +K K ++ + ++ P ++ + G P I
Sbjct: 67 RYKTNLYKLKEERAIEPETFTQLVSSSLYERRFG----PYFVGPVVAGINSKSGKPFIAG 122
Query: 243 TDPAGYYCSFKA-VSVGVKTTEANSYLEKKFKKKTNYTGDETIQLAISCL 291
D G K + G + + E ++ N ++ + L
Sbjct: 123 FDLIGCIDEAKDFIVSGTASDQLFGMCESLYEP--NLEPEDLFETISQAL 170
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Length = 219
Score = 56.8 bits (138), Expect = 7e-10
Identities = 29/169 (17%), Positives = 64/169 (37%), Gaps = 5/169 (2%)
Query: 125 GVTSVAVKGVDTAVVATEKKV-PDSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRA 183
G + + VK V+A + SL + ++ + + + +G AD +Y Q
Sbjct: 8 GTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVL 67
Query: 184 RYEAASFKYK-HGYSMPIDQLCNRIADISQVYTQNAEMRPLGCSMILISYDENEGPLIYK 242
+ G+S + + + +Y++ ++M PL +M++ Y + +
Sbjct: 68 GQMVIDEELLGDGHSYSPRAIHSWLTRA--MYSRRSKMNPLWNTMVIGGYA-DGESFLGY 124
Query: 243 TDPAGYYCSFKAVSVGVKTTEANSYLEKKFKKKTNYTGDETIQLAISCL 291
D G +++ G A L + +K+ + E L C+
Sbjct: 125 VDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCM 173
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.6 bits (84), Expect = 0.010
Identities = 30/132 (22%), Positives = 44/132 (33%), Gaps = 32/132 (24%)
Query: 165 VGCVMTGMQADSRYQVQRARYEAA--SFKYKHGYSMPIDQLCNRIADISQVYTQNAEMRP 222
G M GM + + + A FK +G+S I DI N +
Sbjct: 1629 QG--M-GMDLYKTSKAAQDVWNRADNHFKDTYGFS---------ILDIVINNPVNLTIHF 1676
Query: 223 LGCSMILISYDENEGPLIYKTDPAGYYCS---FKAVSVGVKTTEANSYL---EKKFKKKT 276
G I EN +I++T G + FK + + SY EK T
Sbjct: 1677 GGEKGKRIR--ENYSAMIFETIVDGKLKTEKIFKEI-----NEHSTSYTFRSEKGLLSAT 1729
Query: 277 NYTGDETIQLAI 288
+T Q A+
Sbjct: 1730 QFT-----QPAL 1736
Score = 35.0 bits (80), Expect = 0.031
Identities = 33/185 (17%), Positives = 52/185 (28%), Gaps = 79/185 (42%)
Query: 13 ITIFSPEGRLYQ----------VEYA-FKAINQGGVT---------S-------VAVKGV 45
T S +G L +E A F+ + G+ S ++ V
Sbjct: 1717 YTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADV 1776
Query: 46 ----DTA-VV-----ATEKKVP-DSL---------VDPKTVTNLYSLTPTVGCVMTGMQA 85
VV + VP D L ++P V + Q
Sbjct: 1777 MSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRV------------AASFSQE 1824
Query: 86 DSRYQVQRARAGFDRHITIFSPEGRLYQVEYA-FKAINQGGVTSVA---VKGVDTAV-VA 140
+Y V+R + G L VE + N VA ++ +DT V
Sbjct: 1825 ALQYVVER----------VGKRTGWL--VEIVNY---NVENQQYVAAGDLRALDTVTNVL 1869
Query: 141 TEKKV 145
K+
Sbjct: 1870 NFIKL 1874
Score = 34.3 bits (78), Expect = 0.058
Identities = 49/314 (15%), Positives = 91/314 (28%), Gaps = 118/314 (37%)
Query: 3 RGSSAGFDRHITIF----SPEG------RLYQ---------VEYAFKAINQ-----GGVT 38
R G + + IF + + LYQ ++++ + +++
Sbjct: 147 RAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAE 206
Query: 39 SVAVKGVD-TAVVATEKKVPDSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQRARAG 97
V +G++ + PD Y L+ + C + G+ + Y V G
Sbjct: 207 KVFTQGLNILEWLENPSNTPD---------KDYLLSIPISCPLIGVIQLAHYVVTAKLLG 257
Query: 98 FDRHITIFSPEGRLYQVEYAFKAINQGGVTSVAVKGVDTAVVATEKKVPDSLVD--PKTV 155
F +P ++ +G + +G+ TAV E +S K +
Sbjct: 258 F-------TPG--------ELRSYLKG--ATGHSQGLVTAVAIAETDSWESFFVSVRKAI 300
Query: 156 TNLYSLTPTVGCVMTGMQADSRYQVQRARYEAASFKYKHGYSMPIDQLCNRIADISQVYT 215
T L+ +G + A Y + S+P I +
Sbjct: 301 TVLFF----IGV-----------RCYEA--------YPN-TSLP--------PSILEDSL 328
Query: 216 QNAEMRPLGCSMILISYDENEGPLIYKTDPAGYYCSFKAVSVGVKTTEANSYLEKKFKKK 275
+N E P M+ IS + + Y+ K
Sbjct: 329 ENNEGVP--SPMLSIS--------------------------NLTQEQVQDYVNK----- 355
Query: 276 TNYTGDETIQLAIS 289
TN Q+ IS
Sbjct: 356 TNSHLPAGKQVEIS 369
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.6 bits (81), Expect = 0.020
Identities = 39/302 (12%), Positives = 82/302 (27%), Gaps = 93/302 (30%)
Query: 5 SSAGFDRHITIF-SPEGRLYQVEYAFKAINQGGVTSVAVKGVD-------TAVVATEKKV 56
S D HI + ++ + + + V V+ V + + TE++
Sbjct: 47 SKEEID-HIIMSKDAVSGTLRLFWTLLSKQEEMV-QKFVEEVLRINYKFLMSPIKTEQRQ 104
Query: 57 PD-----------------SLVDPKTVT----------NLYSLTPTVGCVMTGM------ 83
P + V+ L L P ++ G+
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164
Query: 84 ----QADSRYQVQRARAGFDRHI---TI---FSPEGRL-------YQVEYAFKAINQGGV 126
Y+VQ D I + SPE L YQ++ + + +
Sbjct: 165 WVALDVCLSYKVQCK---MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 127 T----SVAVKGVDTAVVATEKKVPDSLV------DPKTVTNLYSLTPTVGC---VMTGMQ 173
+++ ++ K + L+ + K + C + T +
Sbjct: 222 NIKLRIHSIQAELRRLLK-SKPYENCLLVLLNVQNAKAWNAF-----NLSCKILLTTRFK 275
Query: 174 ADSRYQVQRARYEAASFKYKHGYSMP-IDQLCNRIADIS------QVYTQNAEMRPLGCS 226
+ + + + + + L + D +V T N P S
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN----PRRLS 331
Query: 227 MI 228
+I
Sbjct: 332 II 333
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 2.2
Identities = 9/26 (34%), Positives = 10/26 (38%), Gaps = 5/26 (19%)
Query: 269 EKK-FKKKTN----YTGDETIQLAIS 289
EK+ KK Y D LAI
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIK 43
>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN;
1.03A {Pseudomonas putida} PDB: 3l5m_A* 3n19_B* 3n16_A*
3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A*
2h8x_A*
Length = 363
Score = 28.6 bits (65), Expect = 2.6
Identities = 8/48 (16%), Positives = 15/48 (31%), Gaps = 4/48 (8%)
Query: 5 SSAGFDRHITIFSPEGRLYQVEYAFKAI-NQGGVTSVAVKGVDTAVVA 51
S I P G + A + + + + + G T +A
Sbjct: 266 SVGFTIPDTNI--PWGPAFMGPIA-ERVRREAKLPVTSAWGFGTPQLA 310
>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A
{Thermus scotoductus} PDB: 3hf3_A*
Length = 349
Score = 27.9 bits (63), Expect = 3.8
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 5 SSAGFDRHITIFSPEGRLYQVEYAFKAI-NQGGVTSVAVKGVDTAVVA 51
SS G + I P +QV +A A+ + G+ + AV + T A
Sbjct: 259 SSGGVVLRVRI--PLAPGFQVPFA-DAVRKRVGLRTGAVGLITTPEQA 303
>3fvc_A GP115, glycoprotein GP110; viral fusion protein, PH domains, fusion
loops, glycoprotein protein, membrane, transmembrane,
viral protein; HET: NAG; 3.20A {Human herpesvirus 4}
Length = 663
Score = 27.6 bits (61), Expect = 5.4
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 56 VPDSLVDPKTVTNLYSLTPTVGCVMTGMQADSRY 89
+ P V Y TV C++T M A S
Sbjct: 162 QTELYDAPGRVEATYRTRTTVNCLITDMMAKSNS 195
Score = 27.6 bits (61), Expect = 5.4
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 145 VPDSLVDPKTVTNLYSLTPTVGCVMTGMQADSRY 178
+ P V Y TV C++T M A S
Sbjct: 162 QTELYDAPGRVEATYRTRTTVNCLITDMMAKSNS 195
>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R,
cytokine, glycoprotein, IM response, membrane,
phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens}
PDB: 3bpn_C*
Length = 314
Score = 27.2 bits (59), Expect = 7.6
Identities = 7/58 (12%), Positives = 19/58 (32%), Gaps = 1/58 (1%)
Query: 141 TEKKVPDSLVDPKTVTNLYSLTPTVGCVMTGMQADSRYQVQ-RARYEAASFKYKHGYS 197
T + ++ T ++ G+ D+ V+ R + ++ +S
Sbjct: 243 THNVFYVQEAKCENPEFERNVENTSCFMVPGVLPDTLNTVRIRVKTNKLCYEDDKLWS 300
>3n29_A Carboxynorspermidine decarboxylase; lyase; HET: PLP; 1.90A
{Campylobacter jejuni subsp}
Length = 418
Score = 26.9 bits (60), Expect = 9.1
Identities = 9/54 (16%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Query: 64 KTVTNLYSLTPTVGCVMTGMQADSRYQVQRARAGFDRHITIFSPEGRLYQVEYA 117
K VG + G ++ + A+ D+ I +SP + ++
Sbjct: 77 KGFAFS-GAMKIVGEYLKGCTCSGLWEAKFAKEYMDKEIHTYSPAFKEDEIGEI 129
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.131 0.375
Gapped
Lambda K H
0.267 0.0790 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,295,704
Number of extensions: 251873
Number of successful extensions: 718
Number of sequences better than 10.0: 1
Number of HSP's gapped: 604
Number of HSP's successfully gapped: 100
Length of query: 291
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 198
Effective length of database: 4,105,140
Effective search space: 812817720
Effective search space used: 812817720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.6 bits)