Query psy8782
Match_columns 482
No_of_seqs 442 out of 2442
Neff 8.3
Searched_HMMs 46136
Date Fri Aug 16 19:09:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8782.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8782hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4659|consensus 100.0 5.2E-72 1.1E-76 592.6 35.2 416 1-473 246-694 (1899)
2 KOG4659|consensus 100.0 1.2E-38 2.7E-43 339.4 25.9 289 177-475 317-630 (1899)
3 PLN02919 haloacid dehalogenase 100.0 1.4E-26 3.1E-31 262.6 34.8 291 116-470 564-888 (1057)
4 PLN02919 haloacid dehalogenase 99.9 5.7E-25 1.2E-29 249.6 33.9 235 110-365 615-888 (1057)
5 PF08450 SGL: SMP-30/Gluconola 99.8 4.4E-19 9.6E-24 171.4 25.6 223 122-394 2-244 (246)
6 PF08450 SGL: SMP-30/Gluconola 99.6 1.6E-13 3.4E-18 132.6 23.8 221 72-356 3-245 (246)
7 TIGR02604 Piru_Ver_Nterm putat 99.5 1.4E-11 3.1E-16 126.0 26.8 104 224-358 70-204 (367)
8 COG3386 Gluconolactonase [Carb 99.5 2.5E-11 5.5E-16 120.1 25.2 206 122-376 27-254 (307)
9 COG4257 Vgb Streptogramin lyas 99.3 1.4E-09 3E-14 102.3 24.3 194 121-367 63-264 (353)
10 COG4257 Vgb Streptogramin lyas 99.2 4E-09 8.8E-14 99.2 22.0 225 120-395 104-336 (353)
11 PF07995 GSDH: Glucose / Sorbo 99.2 4.7E-09 1E-13 105.9 24.0 160 119-358 1-202 (331)
12 COG3391 Uncharacterized conser 99.2 3.3E-08 7E-13 101.8 29.6 244 70-377 32-296 (381)
13 KOG1520|consensus 99.1 1.1E-09 2.5E-14 108.2 15.6 153 115-356 110-283 (376)
14 PF10282 Lactonase: Lactonase, 99.1 1E-07 2.2E-12 96.8 28.6 254 118-402 35-319 (345)
15 PRK11028 6-phosphogluconolacto 99.1 1.8E-07 4E-12 94.2 28.0 235 120-394 35-292 (330)
16 PRK11028 6-phosphogluconolacto 99.0 3.4E-07 7.5E-12 92.2 28.7 158 176-364 36-204 (330)
17 PF10282 Lactonase: Lactonase, 99.0 2E-07 4.4E-12 94.6 25.7 221 119-372 86-332 (345)
18 COG3391 Uncharacterized conser 99.0 4.6E-07 1E-11 93.3 27.2 231 120-405 31-283 (381)
19 KOG1214|consensus 98.9 1E-08 2.2E-13 108.2 14.1 182 121-358 1026-1217(1289)
20 TIGR02604 Piru_Ver_Nterm putat 98.9 3.8E-08 8.3E-13 100.8 17.5 151 224-395 12-202 (367)
21 PF06977 SdiA-regulated: SdiA- 98.9 6.2E-07 1.4E-11 86.1 23.1 198 119-358 21-242 (248)
22 COG3386 Gluconolactonase [Carb 98.8 6E-07 1.3E-11 89.1 20.2 195 227-468 26-241 (307)
23 KOG1214|consensus 98.7 1.9E-07 4.2E-12 98.7 13.7 180 228-467 1027-1223(1289)
24 COG2706 3-carboxymuconate cycl 98.6 0.00011 2.3E-09 72.2 28.9 245 116-391 36-305 (346)
25 COG2706 3-carboxymuconate cycl 98.6 0.00012 2.6E-09 71.9 28.9 217 120-371 89-330 (346)
26 TIGR03606 non_repeat_PQQ dehyd 98.5 8.2E-06 1.8E-10 84.7 17.7 32 117-148 27-60 (454)
27 KOG1520|consensus 98.4 6E-06 1.3E-10 82.1 15.5 114 224-366 113-250 (376)
28 PF07995 GSDH: Glucose / Sorbo 98.4 2E-06 4.3E-11 86.8 10.1 126 225-367 1-158 (331)
29 PF01436 NHL: NHL repeat; Int 98.3 1.2E-06 2.5E-11 54.4 5.1 28 267-295 1-28 (28)
30 PF06977 SdiA-regulated: SdiA- 98.3 1.6E-05 3.6E-10 76.4 14.7 199 71-295 24-247 (248)
31 PF03088 Str_synth: Strictosid 98.3 2.6E-06 5.5E-11 68.2 7.7 66 229-297 1-86 (89)
32 TIGR03866 PQQ_ABC_repeats PQQ- 98.3 0.0022 4.7E-08 62.5 29.6 198 121-371 32-244 (300)
33 TIGR03606 non_repeat_PQQ dehyd 98.2 7.2E-05 1.6E-09 77.8 17.7 114 223-354 27-162 (454)
34 TIGR03866 PQQ_ABC_repeats PQQ- 98.2 0.0019 4.2E-08 62.8 27.1 192 121-368 74-283 (300)
35 PF01436 NHL: NHL repeat; Int 98.1 3.5E-06 7.7E-11 52.2 3.9 26 119-144 1-28 (28)
36 COG3204 Uncharacterized protei 98.1 0.00059 1.3E-08 65.7 20.4 208 121-365 87-312 (316)
37 TIGR02658 TTQ_MADH_Hv methylam 98.0 0.0095 2E-07 60.3 28.8 214 121-375 48-342 (352)
38 PF03022 MRJP: Major royal jel 98.0 0.0014 3E-08 64.8 20.9 201 121-356 2-254 (287)
39 TIGR03118 PEPCTERM_chp_1 conse 97.9 0.005 1.1E-07 59.9 22.7 32 116-147 19-52 (336)
40 KOG4499|consensus 97.8 0.00075 1.6E-08 62.9 13.9 120 230-372 113-249 (310)
41 PF03088 Str_synth: Strictosid 97.7 0.00022 4.9E-09 57.1 8.4 68 271-366 1-88 (89)
42 KOG4499|consensus 97.6 0.0011 2.4E-08 61.7 12.7 142 124-286 113-273 (310)
43 COG3204 Uncharacterized protei 97.6 0.0088 1.9E-07 57.8 18.6 201 74-296 91-310 (316)
44 PF02239 Cytochrom_D1: Cytochr 97.5 0.022 4.8E-07 58.4 22.4 187 133-374 8-212 (369)
45 PF02239 Cytochrom_D1: Cytochr 97.5 0.033 7.2E-07 57.1 23.5 151 122-297 39-201 (369)
46 COG2133 Glucose/sorbosone dehy 97.5 0.032 7E-07 57.0 22.2 113 223-358 128-260 (399)
47 PF03022 MRJP: Major royal jel 97.3 0.018 3.8E-07 57.0 18.2 71 228-298 3-96 (287)
48 COG2133 Glucose/sorbosone dehy 97.3 0.081 1.8E-06 54.2 22.7 257 68-366 66-398 (399)
49 TIGR03032 conserved hypothetic 97.2 0.044 9.5E-07 53.8 18.5 209 116-360 45-263 (335)
50 TIGR02658 TTQ_MADH_Hv methylam 97.1 0.37 8E-06 48.9 29.3 54 245-298 77-136 (352)
51 PF05096 Glu_cyclase_2: Glutam 97.1 0.14 3E-06 49.4 20.8 190 121-356 46-250 (264)
52 PF05787 DUF839: Bacterial pro 97.1 0.0052 1.1E-07 65.7 12.3 104 264-373 346-476 (524)
53 KOG0291|consensus 97.0 0.38 8.3E-06 52.0 24.7 213 228-477 395-626 (893)
54 KOG0318|consensus 96.3 1.7 3.8E-05 45.3 31.1 203 223-479 318-526 (603)
55 COG3211 PhoX Predicted phospha 96.3 0.038 8.3E-07 58.0 11.4 88 264-357 413-519 (616)
56 PF13449 Phytase-like: Esteras 96.2 0.49 1.1E-05 47.6 18.8 32 121-152 86-125 (326)
57 PF05787 DUF839: Bacterial pro 96.2 0.06 1.3E-06 57.6 12.6 65 221-285 431-519 (524)
58 TIGR03118 PEPCTERM_chp_1 conse 96.2 1.5 3.2E-05 43.1 22.2 111 230-368 142-283 (336)
59 cd00200 WD40 WD40 domain, foun 96.1 1.2 2.5E-05 41.7 30.5 186 121-365 11-207 (289)
60 cd00200 WD40 WD40 domain, foun 96.0 1.4 2.9E-05 41.2 22.8 147 121-297 95-248 (289)
61 PF07433 DUF1513: Protein of u 95.9 2 4.3E-05 42.5 21.3 151 126-297 57-246 (305)
62 PF02333 Phytase: Phytase; In 95.9 2.4 5.2E-05 43.4 22.1 157 223-416 153-339 (381)
63 KOG1215|consensus 95.9 0.23 5.1E-06 56.9 16.4 184 120-358 437-630 (877)
64 KOG0291|consensus 95.8 1.5 3.2E-05 47.8 20.3 75 230-312 440-518 (893)
65 PRK11138 outer membrane biogen 95.7 3 6.5E-05 43.0 22.4 135 236-405 256-394 (394)
66 TIGR03032 conserved hypothetic 95.6 2.7 5.8E-05 41.6 21.3 190 174-392 48-256 (335)
67 KOG1446|consensus 95.4 2.9 6.3E-05 40.9 25.9 130 246-408 81-220 (311)
68 PF05096 Glu_cyclase_2: Glutam 95.3 0.55 1.2E-05 45.4 14.0 105 228-365 47-157 (264)
69 smart00135 LY Low-density lipo 95.1 0.056 1.2E-06 36.2 5.0 32 266-297 7-38 (43)
70 PF13449 Phytase-like: Esteras 94.7 3.3 7.2E-05 41.6 18.6 112 227-357 86-234 (326)
71 PF00058 Ldl_recept_b: Low-den 94.4 0.21 4.6E-06 33.9 6.4 40 280-347 1-42 (42)
72 PRK02888 nitrous-oxide reducta 94.3 1.1 2.4E-05 48.5 14.5 144 176-356 236-393 (635)
73 PF05935 Arylsulfotrans: Aryls 94.0 5.7 0.00012 42.3 19.3 66 245-316 224-313 (477)
74 KOG0263|consensus 93.8 3.3 7.2E-05 45.0 17.0 108 225-364 535-648 (707)
75 PF02333 Phytase: Phytase; In 93.8 5.2 0.00011 41.0 17.7 72 227-298 209-290 (381)
76 PF13360 PQQ_2: PQQ-like domai 93.8 6 0.00013 37.0 23.5 111 232-371 32-147 (238)
77 PF00058 Ldl_recept_b: Low-den 93.7 0.2 4.4E-06 34.0 5.2 38 237-277 1-42 (42)
78 KOG0266|consensus 93.6 10 0.00022 40.1 20.4 110 226-367 204-321 (456)
79 PF01731 Arylesterase: Arylest 93.6 0.32 6.8E-06 38.8 6.8 34 264-297 50-83 (86)
80 KOG1274|consensus 93.5 15 0.00033 41.0 22.1 148 178-369 17-173 (933)
81 PF13360 PQQ_2: PQQ-like domai 93.4 6.8 0.00015 36.6 24.3 190 185-407 35-232 (238)
82 COG3211 PhoX Predicted phospha 93.4 1.1 2.5E-05 47.3 12.3 64 223-286 497-572 (616)
83 PRK04792 tolB translocation pr 93.4 12 0.00026 39.4 23.6 65 229-297 309-381 (448)
84 KOG0318|consensus 93.2 13 0.00028 39.1 26.7 70 268-364 321-391 (603)
85 KOG0266|consensus 92.8 15 0.00032 38.9 20.3 67 227-297 248-317 (456)
86 smart00135 LY Low-density lipo 92.4 0.22 4.8E-06 33.2 3.9 33 223-255 6-41 (43)
87 KOG1274|consensus 91.9 20 0.00043 40.2 19.6 122 221-366 91-219 (933)
88 PRK11138 outer membrane biogen 91.5 19 0.0004 37.1 22.2 97 279-406 256-354 (394)
89 PRK02888 nitrous-oxide reducta 91.1 3.2 6.9E-05 45.0 12.6 71 226-298 321-404 (635)
90 KOG3567|consensus 90.3 2.7 5.9E-05 43.4 10.7 77 221-297 214-297 (501)
91 PRK04922 tolB translocation pr 90.1 27 0.00057 36.5 22.1 64 230-297 296-367 (433)
92 KOG1215|consensus 90.1 3.8 8.2E-05 47.1 13.2 152 116-296 476-637 (877)
93 PF06739 SBBP: Beta-propeller 90.0 0.28 6E-06 32.6 2.4 20 338-357 13-32 (38)
94 TIGR03300 assembly_YfgL outer 89.5 26 0.00056 35.6 27.7 227 130-409 65-301 (377)
95 PF05935 Arylsulfotrans: Aryls 89.5 26 0.00057 37.2 18.2 139 231-377 153-314 (477)
96 PF14269 Arylsulfotran_2: Aryl 89.5 24 0.00051 35.1 23.9 126 223-370 141-294 (299)
97 TIGR03300 assembly_YfgL outer 89.2 27 0.00059 35.5 23.1 126 236-396 241-370 (377)
98 PF06739 SBBP: Beta-propeller 89.0 0.38 8.3E-06 31.9 2.4 19 120-138 13-31 (38)
99 PF14517 Tachylectin: Tachylec 88.3 6.2 0.00013 37.4 10.9 156 226-405 34-206 (229)
100 PRK03629 tolB translocation pr 88.2 36 0.00079 35.5 23.7 65 229-297 290-362 (429)
101 PRK02889 tolB translocation pr 87.6 39 0.00084 35.2 24.1 110 230-372 288-410 (427)
102 PRK01742 tolB translocation pr 87.5 39 0.00085 35.2 22.1 61 229-297 295-360 (429)
103 KOG1446|consensus 87.5 31 0.00067 34.0 19.9 116 225-367 140-265 (311)
104 PF14517 Tachylectin: Tachylec 87.1 6.8 0.00015 37.1 10.4 150 119-297 33-205 (229)
105 COG3823 Glutamine cyclotransfe 85.1 2.6 5.6E-05 39.2 6.3 53 236-288 185-249 (262)
106 KOG0279|consensus 85.1 39 0.00085 32.9 19.0 187 121-365 65-262 (315)
107 KOG0272|consensus 84.2 30 0.00065 35.5 13.8 118 227-376 305-431 (459)
108 COG3823 Glutamine cyclotransfe 83.9 13 0.00028 34.7 10.2 107 229-356 134-248 (262)
109 PRK05137 tolB translocation pr 83.5 61 0.0013 33.8 23.9 64 230-297 294-365 (435)
110 COG3490 Uncharacterized protei 82.9 51 0.0011 32.4 15.3 139 175-349 162-332 (366)
111 PF14269 Arylsulfotran_2: Aryl 82.2 56 0.0012 32.5 18.6 40 267-313 143-182 (299)
112 TIGR02276 beta_rpt_yvtn 40-res 82.2 7.6 0.00016 25.5 6.3 20 278-297 2-21 (42)
113 PF01731 Arylesterase: Arylest 81.2 2.3 5E-05 33.8 3.9 27 337-363 53-82 (86)
114 KOG0263|consensus 80.9 53 0.0012 36.1 15.0 65 229-297 581-648 (707)
115 TIGR02800 propeller_TolB tol-p 80.4 73 0.0016 32.6 22.9 63 231-297 283-353 (417)
116 PF13860 FlgD_ig: FlgD Ig-like 78.8 2.8 6.1E-05 32.8 3.7 25 3-27 51-76 (81)
117 COG3292 Predicted periplasmic 76.8 43 0.00093 35.9 12.4 64 230-296 251-315 (671)
118 KOG0282|consensus 76.1 98 0.0021 32.4 14.5 143 127-298 266-415 (503)
119 KOG2055|consensus 74.8 30 0.00065 35.9 10.5 68 228-296 438-510 (514)
120 PRK13616 lipoprotein LpqB; Pro 74.7 1.4E+02 0.003 32.8 24.7 68 227-297 449-526 (591)
121 PRK00178 tolB translocation pr 73.6 1.2E+02 0.0025 31.5 24.1 64 230-297 291-362 (430)
122 PRK01742 tolB translocation pr 73.5 1.2E+02 0.0026 31.6 17.0 65 229-297 207-279 (429)
123 PRK04922 tolB translocation pr 71.2 1.4E+02 0.0029 31.2 22.1 64 230-297 252-323 (433)
124 KOG2110|consensus 69.8 28 0.00062 35.0 8.8 68 228-297 176-247 (391)
125 KOG4649|consensus 69.0 1.2E+02 0.0025 29.6 18.1 30 451-480 249-279 (354)
126 KOG0301|consensus 68.1 1.9E+02 0.0042 31.8 21.9 108 224-364 178-287 (745)
127 KOG0286|consensus 67.2 1.3E+02 0.0029 29.6 21.1 116 228-373 189-313 (343)
128 PF07202 Tcp10_C: T-complex pr 64.9 1.1E+02 0.0024 27.9 19.1 15 360-374 139-153 (179)
129 PRK04043 tolB translocation pr 64.6 1.8E+02 0.004 30.2 22.3 106 232-372 283-407 (419)
130 KOG0293|consensus 64.6 1.8E+02 0.0039 30.1 13.3 148 122-298 272-425 (519)
131 KOG0319|consensus 63.2 80 0.0017 34.8 11.2 105 180-297 25-134 (775)
132 KOG0289|consensus 62.3 1.2E+02 0.0025 31.6 11.5 101 229-359 351-454 (506)
133 COG4247 Phy 3-phytase (myo-ino 62.2 1.6E+02 0.0034 28.6 20.7 77 221-298 148-234 (364)
134 COG1520 FOG: WD40-like repeat 61.3 1.9E+02 0.0041 29.3 19.4 68 223-297 101-170 (370)
135 PRK05137 tolB translocation pr 60.9 2.1E+02 0.0046 29.7 23.6 65 230-297 250-321 (435)
136 PRK03629 tolB translocation pr 60.9 2.1E+02 0.0046 29.7 24.2 64 230-297 247-318 (429)
137 TIGR02608 delta_60_rpt delta-6 60.3 13 0.00029 26.8 3.5 34 228-261 3-45 (55)
138 PRK04792 tolB translocation pr 59.2 2.4E+02 0.0051 29.7 23.3 64 230-297 266-337 (448)
139 TIGR02608 delta_60_rpt delta-6 59.0 21 0.00045 25.8 4.3 35 341-375 4-47 (55)
140 KOG0278|consensus 57.7 1.9E+02 0.004 28.0 15.5 104 176-296 186-295 (334)
141 PF07494 Reg_prop: Two compone 56.9 15 0.00033 21.4 2.7 18 120-137 5-22 (24)
142 PRK12634 flgD flagellar basal 55.5 12 0.00025 35.5 3.2 25 3-27 148-173 (221)
143 smart00284 OLF Olfactomedin-li 54.8 2.1E+02 0.0045 27.7 12.8 141 236-394 34-192 (255)
144 KOG0286|consensus 53.6 2.3E+02 0.0051 28.0 14.4 139 122-292 189-339 (343)
145 KOG0283|consensus 53.3 1.8E+02 0.0039 32.4 12.0 113 228-364 412-531 (712)
146 KOG2110|consensus 52.2 2.2E+02 0.0047 29.0 11.4 63 271-358 177-239 (391)
147 KOG0285|consensus 52.0 2.8E+02 0.006 28.3 13.5 126 221-377 147-279 (460)
148 COG1520 FOG: WD40-like repeat 50.1 2.9E+02 0.0063 28.0 15.1 133 232-395 64-205 (370)
149 KOG0973|consensus 49.4 2.3E+02 0.005 32.6 12.3 77 271-376 133-214 (942)
150 PRK06655 flgD flagellar basal 49.0 18 0.00039 34.3 3.4 26 3-28 152-178 (225)
151 PF08553 VID27: VID27 cytoplas 45.0 4.9E+02 0.011 29.7 14.1 159 117-296 478-645 (794)
152 PF07202 Tcp10_C: T-complex pr 44.4 2.5E+02 0.0054 25.6 23.3 22 347-368 152-174 (179)
153 KOG0303|consensus 44.4 2.7E+02 0.0059 28.7 10.8 31 123-153 177-210 (472)
154 KOG1539|consensus 43.8 5.3E+02 0.012 29.2 16.3 66 227-296 578-646 (910)
155 KOG0282|consensus 43.3 4.2E+02 0.009 28.0 12.1 136 229-395 262-404 (503)
156 COG3292 Predicted periplasmic 42.0 3.3E+02 0.0072 29.6 11.4 129 188-358 177-310 (671)
157 KOG0319|consensus 41.8 5.4E+02 0.012 28.7 15.0 145 125-298 25-179 (775)
158 KOG0640|consensus 41.0 3.8E+02 0.0083 26.8 14.7 130 228-374 264-405 (430)
159 PRK01029 tolB translocation pr 40.0 4.5E+02 0.0098 27.4 23.0 66 229-297 284-358 (428)
160 PRK05842 flgD flagellar basal 39.4 25 0.00054 34.7 2.8 25 3-27 194-219 (295)
161 PRK00178 tolB translocation pr 39.1 4.5E+02 0.0098 27.1 24.3 64 230-297 247-318 (430)
162 KOG3881|consensus 38.8 3.1E+02 0.0066 28.2 10.2 109 122-253 205-320 (412)
163 PRK12812 flgD flagellar basal 38.8 32 0.0007 33.3 3.4 25 3-27 167-192 (259)
164 PRK12633 flgD flagellar basal 37.3 30 0.00065 32.9 2.9 25 3-27 155-180 (230)
165 KOG0645|consensus 36.4 4.2E+02 0.0092 25.9 23.2 124 225-376 14-148 (312)
166 KOG0303|consensus 36.4 5E+02 0.011 26.8 13.2 68 273-371 137-210 (472)
167 KOG0293|consensus 36.3 5.2E+02 0.011 26.9 15.5 111 227-368 226-345 (519)
168 PF06433 Me-amine-dh_H: Methyl 35.8 4.8E+02 0.01 26.4 17.2 198 119-372 94-338 (342)
169 PTZ00421 coronin; Provisional 35.6 5.8E+02 0.013 27.3 16.8 112 123-312 79-206 (493)
170 KOG0279|consensus 34.9 4.5E+02 0.0098 25.8 20.5 65 228-296 66-133 (315)
171 KOG3567|consensus 34.4 53 0.0012 34.3 4.3 50 246-297 446-495 (501)
172 KOG0278|consensus 32.7 4.7E+02 0.01 25.4 11.5 95 228-357 187-287 (334)
173 PF06079 Apyrase: Apyrase; In 32.6 2.8E+02 0.0062 27.3 8.7 18 279-296 63-80 (291)
174 PF08662 eIF2A: Eukaryotic tra 32.3 3.9E+02 0.0085 24.3 12.9 54 122-193 62-119 (194)
175 KOG0275|consensus 32.1 5.3E+02 0.012 25.8 13.7 110 178-297 352-466 (508)
176 KOG1539|consensus 32.0 5.2E+02 0.011 29.3 11.3 156 228-413 451-614 (910)
177 KOG0273|consensus 31.1 6.6E+02 0.014 26.6 13.4 67 227-297 237-305 (524)
178 KOG0272|consensus 31.1 6.3E+02 0.014 26.3 17.4 120 223-375 259-387 (459)
179 KOG2055|consensus 30.8 6.6E+02 0.014 26.5 18.4 22 437-458 479-501 (514)
180 TIGR02800 propeller_TolB tol-p 30.6 5.9E+02 0.013 25.8 20.0 63 231-297 195-265 (417)
181 PLN00181 protein SPA1-RELATED; 30.2 8.5E+02 0.018 27.6 32.8 66 228-297 578-647 (793)
182 KOG0283|consensus 29.3 8.5E+02 0.018 27.3 14.1 157 121-297 411-575 (712)
183 KOG0284|consensus 28.1 4.7E+02 0.01 27.1 9.6 108 178-297 100-209 (464)
184 PF15416 DUF4623: Domain of un 27.8 2.4E+02 0.0052 28.5 7.3 77 269-363 184-269 (442)
185 COG5276 Uncharacterized conser 27.3 6.4E+02 0.014 25.2 19.5 172 130-363 96-283 (370)
186 PF07433 DUF1513: Protein of u 27.1 6.4E+02 0.014 25.1 19.3 62 227-296 218-283 (305)
187 TIGR03803 Gloeo_Verruco Gloeo_ 27.0 1.3E+02 0.0027 19.5 3.6 24 236-259 1-31 (34)
188 PRK02889 tolB translocation pr 26.9 7.2E+02 0.016 25.7 21.8 49 246-297 177-227 (427)
189 PRK04043 tolB translocation pr 26.0 7.6E+02 0.016 25.6 14.7 64 230-297 192-264 (419)
190 PRK12813 flgD flagellar basal 25.7 64 0.0014 30.6 3.0 24 3-26 147-171 (223)
191 smart00564 PQQ beta-propeller 25.6 1.2E+02 0.0027 18.3 3.5 23 347-369 5-29 (33)
192 KOG0268|consensus 25.3 7.5E+02 0.016 25.3 11.2 70 269-365 231-302 (433)
193 KOG1407|consensus 24.9 6.6E+02 0.014 24.6 16.4 28 269-297 149-176 (313)
194 PF00400 WD40: WD domain, G-be 24.6 1.8E+02 0.004 18.0 5.7 28 268-296 12-39 (39)
195 TIGR03074 PQQ_membr_DH membran 24.3 9.9E+02 0.021 27.2 12.5 35 385-419 258-292 (764)
196 COG4247 Phy 3-phytase (myo-ino 24.2 6.8E+02 0.015 24.4 18.0 43 110-152 143-195 (364)
197 KOG3881|consensus 24.0 8.1E+02 0.017 25.2 11.1 110 227-365 204-320 (412)
198 PF02191 OLF: Olfactomedin-lik 23.0 6.8E+02 0.015 24.0 12.4 58 236-297 30-96 (250)
199 KOG2111|consensus 22.1 7.6E+02 0.017 24.8 9.5 74 222-297 178-255 (346)
200 PF00930 DPPIV_N: Dipeptidyl p 21.3 6E+02 0.013 25.5 9.4 59 237-297 249-314 (353)
201 KOG0772|consensus 21.3 1E+03 0.023 25.5 18.3 27 271-297 272-298 (641)
202 PF14339 DUF4394: Domain of un 20.7 7.5E+02 0.016 23.7 9.4 68 229-297 30-102 (236)
203 PRK12690 flgF flagellar basal 20.2 2.4E+02 0.0053 26.9 5.8 34 226-259 76-116 (238)
204 TIGR03075 PQQ_enz_alc_DH PQQ-d 20.2 4.3E+02 0.0092 28.5 8.4 66 236-310 69-144 (527)
205 KOG0289|consensus 20.2 1E+03 0.022 25.0 16.6 67 229-297 307-376 (506)
No 1
>KOG4659|consensus
Probab=100.00 E-value=5.2e-72 Score=592.61 Aligned_cols=416 Identities=32% Similarity=0.559 Sum_probs=343.7
Q ss_pred CceEEEEEcCcccCCceEeeeEEEEEEEeeEEcccce-eEEEEEEEEeeccccccccccccccccceecccCCCeEEecC
Q psy8782 1 MIKFTYAWNRLNVYRQRVYGVTTALVKVGYKYRDCRD-IMWDLQTTKLSGHDMSISEIGGWNLDIHHRYNFHEGILQKGD 79 (482)
Q Consensus 1 ~~~~~f~w~~~d~y~~~v~g~~~a~v~vgy~y~~~~~-~~w~~~~~~l~g~~~~~s~~ggw~l~~~h~~~~~~gil~~gd 79 (482)
||+|||+|||+|+|||+|||+++|+|+|||||+.|++ ++||+||++|+|+++++|++|||+||+||+||+.+|||+|||
T Consensus 246 nl~ytfaWdk~n~YrQrv~Gl~~avV~VGyeY~~C~~~ivW~~rt~~l~G~~m~~s~~g~W~LdiHH~ln~~~gIl~kGn 325 (1899)
T KOG4659|consen 246 NLTYTFAWDKMNAYRQRVYGLVPAVVRVGYEYQGCDDTIVWQTRTSQLMGATMRKSIGGGWTLDIHHHLNIVNGILEKGN 325 (1899)
T ss_pred CcEEEEEecccchhhheeeccceeEEEeeeEecCCCceeeeeeehhhhccccccchhcCcceeecceecccccCeEEecC
Confidence 6899999999999999999999999999999999999 899999999999999999999999999999999999999999
Q ss_pred CceEEEeeCCCeEEEEeccCccCCCCCcCCCCCCcCcccCCCceEEEEcCCCcEEEEeCCcEEEEcCCCeEEEEEeeCCC
Q psy8782 80 GSNIYLKNKPRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDFNLIRRIMTDGTVRTVVRLKNQ 159 (482)
Q Consensus 80 G~~~~~~~~~~~i~tv~G~G~~~~~~~~~~~G~~~~~~~l~~P~glavd~~G~lyvaD~~~Irki~~~G~v~ti~g~g~~ 159 (482)
|+++++.++|.+|+++||+|.++++.|+.|+|.+ ...+|..|..||..|||.|||.|.|.||||.++|++++++..+..
T Consensus 326 G~n~~it~~Prvitt~mgdG~qR~veC~~C~G~a-~~~~L~aPvala~a~DGSl~VGDfNyIRRI~~dg~v~tIl~L~~t 404 (1899)
T KOG4659|consen 326 GGNRLITEEPRVITTAMGDGHQRDVECPKCEGKA-DSISLFAPVALAYAPDGSLIVGDFNYIRRISQDGQVSTILTLGLT 404 (1899)
T ss_pred CcceEeecCCceEEEeccCcccccccCCCCCCcc-ccceeeceeeEEEcCCCcEEEccchheeeecCCCceEEEEEecCC
Confidence 9999999999999999999999999999999988 588999999999999999999999999999999999999988643
Q ss_pred cccCCCccccccccccCC-ceEEEecCCC--eEEE-E-----cCCCeEEEEcCCCccc-cCCCcCCCCC-CCceeecCCc
Q psy8782 160 KFEKFPKILTSCFLSLSP-SGILQKGDGS--NIYL-K-----NKPRIIKTTLGDGHQR-PLDCKDCNGE-AGPKQRLLAP 228 (482)
Q Consensus 160 ~~~~~~~~~~~~~~~~~P-~gi~~~~~g~--~lyi-~-----d~~~~i~~~~g~G~~~-~~~~~~~~g~-~~~~~~l~~P 228 (482)
. ++..+.++.+| +|-+|.++.+ .+|- . |.......++|+|+.+ |++.. |+++ .+..++|..|
T Consensus 405 ~------~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~des-CGDGalA~dA~L~~P 477 (1899)
T KOG4659|consen 405 D------TSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADES-CGDGALAQDAQLIFP 477 (1899)
T ss_pred C------ccceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEeccCcCccccccc-cCcchhcccceeccC
Confidence 2 44555555555 3433333221 1221 1 1235677889999874 56555 7665 4688999999
Q ss_pred cEEEEcCCCCEEEEECCcEEEEcCCCeEEEEEeec----------------cCCCCceeeEEEeCCCCeEEEEeCCCCEE
Q psy8782 229 VALATAPDGSLFVGDFNLIRRIMTDGTVRTVVRLN----------------VTRVAYRYHIAYSPLDGTLYISDPESHQI 292 (482)
Q Consensus 229 ~giavd~~G~lyv~D~~~I~~i~~~G~v~~~~g~~----------------~~~~~~p~giavd~~~g~lyVaD~~n~~I 292 (482)
.||++|++|+||++|..+||++|.+|.+.+++|+. .-++.||..+||+|.++.|||.| +|-|
T Consensus 478 kGIa~dk~g~lYfaD~t~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld--~nvv 555 (1899)
T KOG4659|consen 478 KGIAFDKMGNLYFADGTRIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLD--TNVV 555 (1899)
T ss_pred CceeEccCCcEEEecccEEEEeccCceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEee--cceE
Confidence 99999999999999999999999999999999964 23578999999999999999999 7999
Q ss_pred EEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEECCC-----EEEEcCCCc
Q psy8782 293 LRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADGTN-----IRMVDRDGI 367 (482)
Q Consensus 293 ~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~~n-----Ir~i~~~G~ 367 (482)
++++ +++.+.+++|.+..|.......+-. ..|..+.|-.|..|||..+|.|||+++.. ||++..||+
T Consensus 556 lrit-------~~~rV~Ii~GrP~hC~~a~~t~~~s-kla~H~tl~~~r~Iavg~~G~lyvaEsD~rriNrvr~~~tdg~ 627 (1899)
T KOG4659|consen 556 LRIT-------VVHRVRIILGRPTHCDLANATSSAS-KLADHRTLLIQRDIAVGTDGALYVAESDGRRINRVRKLSTDGT 627 (1899)
T ss_pred EEEc-------cCccEEEEcCCccccccCCCchhhh-hhhhhhhhhhhhceeecCCceEEEEeccchhhhheEEeccCce
Confidence 9999 7999999999999998543222222 46778889999999999999999999854 999999999
Q ss_pred EEEEEcCCCCCCCCCcCCCCceEEeccccceeEEeecCcceEEecccCCCceEEEeeceeeeeeeeeeecccceeeeeeE
Q psy8782 368 VTTVIGNHMHKSHWKPIPCEGTLNIEEVSETMRDIRHTTGWACYGTGDNDHMTLIHCYGVMQDVVTSVFNNSHFLDVHFS 447 (482)
Q Consensus 368 i~ti~G~~~~~~~~~~~~~dg~l~v~~~~~~~~~l~~p~giav~~~g~n~~~~~~~~~g~~~~~~~~~~n~~~~~~~~i~ 447 (482)
|..++|....+..-...-||. +..-... +..+.+.-|..++
T Consensus 628 i~ilaGa~S~C~C~~~~~cdc-------------fs~~~~~--------------------------At~A~lnsp~ala 668 (1899)
T KOG4659|consen 628 ISILAGAKSPCSCDVAACCDC-------------FSLRDVA--------------------------ATQAKLNSPYALA 668 (1899)
T ss_pred EEEecCCCCCCCcccccCCcc-------------ccccchh--------------------------hhccccCCcceEE
Confidence 999998766543211111221 0000000 0112233355688
Q ss_pred EcCCCcEEEEeCCCCeeEEeecccee
Q psy8782 448 HQDQDLFYFVKELPQKIRDDLDELKL 473 (482)
Q Consensus 448 ~~~~g~~yi~d~~n~rIrk~~~~~~~ 473 (482)
+.++|.+||||..|.||||+.+++--
T Consensus 669 VsPdg~v~IAD~gN~rIr~Vs~~~~~ 694 (1899)
T KOG4659|consen 669 VSPDGDVIIADSGNSRIRKVSARMAK 694 (1899)
T ss_pred ECCCCcEEEecCCchhhhhhhhcccc
Confidence 89999999999999999999887743
No 2
>KOG4659|consensus
Probab=100.00 E-value=1.2e-38 Score=339.37 Aligned_cols=289 Identities=39% Similarity=0.659 Sum_probs=252.3
Q ss_pred CceEEEecCCCeEEEEcCCCeEEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEECCcEEEEcCCCeE
Q psy8782 177 PSGILQKGDGSNIYLKNKPRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDFNLIRRIMTDGTV 256 (482)
Q Consensus 177 P~gi~~~~~g~~lyi~d~~~~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~~~I~~i~~~G~v 256 (482)
-+||+...+|++.|+.+.+++|++..|+|..++..+..|+|.. ...+|..|..+|..|||.|||.|+|.|||+.++|++
T Consensus 317 ~~gIl~kGnG~n~~it~~Prvitt~mgdG~qR~veC~~C~G~a-~~~~L~aPvala~a~DGSl~VGDfNyIRRI~~dg~v 395 (1899)
T KOG4659|consen 317 VNGILEKGNGGNRLITEEPRVITTAMGDGHQRDVECPKCEGKA-DSISLFAPVALAYAPDGSLIVGDFNYIRRISQDGQV 395 (1899)
T ss_pred ccCeEEecCCcceEeecCCceEEEeccCcccccccCCCCCCcc-ccceeeceeeEEEcCCCcEEEccchheeeecCCCce
Confidence 3788999999999999999999999999999999999999865 567888999999999999999999999999999999
Q ss_pred EEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccc
Q psy8782 257 RTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAK 336 (482)
Q Consensus 257 ~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~ 336 (482)
.+++..+.+...+.++||++|.+|.|||+|+..++|+|+....+ +++.++.+++||+|+.|+|+++. ||||+.|.+|+
T Consensus 396 ~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~-~d~~~N~evvaG~Ge~Clp~des-CGDGalA~dA~ 473 (1899)
T KOG4659|consen 396 STILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEP-QDSRNNYEVVAGDGEVCLPADES-CGDGALAQDAQ 473 (1899)
T ss_pred EEEEEecCCCccceeEEEecCcCceEEecCCCcceEEEeccCCc-cccccCeeEEeccCcCccccccc-cCcchhcccce
Confidence 99999988899999999999999999999999999999998877 88899999999999999999998 99999999999
Q ss_pred cCCcceEEEeCCCcEEEEECCCEEEEcCCCcEEEEEcCCCCCCCCCcCCCCceEEeccccceeEEeecCcceEEeccc--
Q psy8782 337 LAYPKGVAVSADNILYFADGTNIRMVDRDGIVTTVIGNHMHKSHWKPIPCEGTLNIEEVSETMRDIRHTTGWACYGTG-- 414 (482)
Q Consensus 337 l~~P~giavd~~G~lyvaD~~nIr~i~~~G~i~ti~G~~~~~~~~~~~~~dg~l~v~~~~~~~~~l~~p~giav~~~g-- 414 (482)
|.+|+|||||++|+||++|+.+||+||.+|.|+|++|+.... +.|++|++.+-+.|.+ |.||+.|||+|-.
T Consensus 474 L~~PkGIa~dk~g~lYfaD~t~IR~iD~~giIstlig~~~~~--~~p~~C~~~~kl~~~~-----leWPT~LaV~Pmdns 546 (1899)
T KOG4659|consen 474 LIFPKGIAFDKMGNLYFADGTRIRVIDTTGIISTLIGTTPDQ--HPPRTCAQITKLVDLQ-----LEWPTSLAVDPMDNS 546 (1899)
T ss_pred eccCCceeEccCCcEEEecccEEEEeccCceEEEeccCCCCc--cCccccccccchhhee-----eecccceeecCCCCe
Confidence 999999999999999999999999999999999999998876 7899999999888865 9999999999742
Q ss_pred -------------CCCceEEEeeceeeeeeee--e-----eecccceeeeeeEEcCCCcEEEEeCC---CCeeEEeeccc
Q psy8782 415 -------------DNDHMTLIHCYGVMQDVVT--S-----VFNNSHFLDVHFSHQDQDLFYFVKEL---PQKIRDDLDEL 471 (482)
Q Consensus 415 -------------~n~~~~~~~~~g~~~~~~~--~-----~~n~~~~~~~~i~~~~~g~~yi~d~~---n~rIrk~~~~~ 471 (482)
-+++|+.+++-...=+... . ..-..+..+..|++..+|.|||++.- =|||||+-++=
T Consensus 547 l~Vld~nvvlrit~~~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~lyvaEsD~rriNrvr~~~tdg 626 (1899)
T KOG4659|consen 547 LLVLDTNVVLRITVVHRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGALYVAESDGRRINRVRKLSTDG 626 (1899)
T ss_pred EEEeecceEEEEccCccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCceEEEEeccchhhhheEEeccCc
Confidence 5567776654433221111 0 01123344568999999999999654 46778887766
Q ss_pred eeec
Q psy8782 472 KLSS 475 (482)
Q Consensus 472 ~~~~ 475 (482)
+++.
T Consensus 627 ~i~i 630 (1899)
T KOG4659|consen 627 TISI 630 (1899)
T ss_pred eEEE
Confidence 6654
No 3
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.96 E-value=1.4e-26 Score=262.64 Aligned_cols=291 Identities=20% Similarity=0.216 Sum_probs=203.6
Q ss_pred cccCCCceEEEEcC-CCcEEEEeC--CcEEEEcCCCeEEEEEee-CCCcccCCCccccccccccCCceEEEecCCCeEEE
Q psy8782 116 KQRLLAPVALATAP-DGSLFVGDF--NLIRRIMTDGTVRTVVRL-KNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYL 191 (482)
Q Consensus 116 ~~~l~~P~glavd~-~G~lyvaD~--~~Irki~~~G~v~ti~g~-g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi 191 (482)
.+.|..|.+|++|+ +|+|||+|. |||++++.+|++...++. +..++. ++.+ ..+.+..|.|++++++++.|||
T Consensus 564 ~s~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~-dG~~--~~a~f~~P~GIavd~~gn~LYV 640 (1057)
T PLN02919 564 TSPLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLR-DGSF--EDATFNRPQGLAYNAKKNLLYV 640 (1057)
T ss_pred cccCCCCceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCC-CCch--hccccCCCcEEEEeCCCCEEEE
Confidence 57899999999997 588999998 899999999988766654 444432 1211 2245778999999999989999
Q ss_pred EcCC-C----------eEEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcC-CCCEEEEEC--CcEEEEcC-CCeE
Q psy8782 192 KNKP-R----------IIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAP-DGSLFVGDF--NLIRRIMT-DGTV 256 (482)
Q Consensus 192 ~d~~-~----------~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~-~G~lyv~D~--~~I~~i~~-~G~v 256 (482)
+|.. + .+++++++|..... ..++.......|+.|.+|++++ +|.|||+|. ++|+++++ +|.+
T Consensus 641 aDt~n~~Ir~id~~~~~V~tlag~G~~g~~---~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v 717 (1057)
T PLN02919 641 ADTENHALREIDFVNETVRTLAGNGTKGSD---YQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVT 717 (1057)
T ss_pred EeCCCceEEEEecCCCEEEEEeccCcccCC---CCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeE
Confidence 9862 3 33445555543210 0011111234589999999999 789999998 89999996 4556
Q ss_pred EEEEeec-----------cCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCc
Q psy8782 257 RTVVRLN-----------VTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAH 325 (482)
Q Consensus 257 ~~~~g~~-----------~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~ 325 (482)
.++.|.+ ...+..|.||+++|+++.|||+|..+++|++++. .++...+++|..... +.....
T Consensus 718 ~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~------~tg~~~~~~gg~~~~-~~~l~~ 790 (1057)
T PLN02919 718 RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDL------KTGGSRLLAGGDPTF-SDNLFK 790 (1057)
T ss_pred EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEEC------CCCcEEEEEeccccc-Cccccc
Confidence 5555432 1357789999999955579999999999999995 345556666522110 000001
Q ss_pred cC-CCccccccccCCcceEEEeCCCcEEEEECCC--EEEEcC-CCcEEEEEcCCCCCCCCCcCCCCceEEeccccceeEE
Q psy8782 326 CG-DGAPARDAKLAYPKGVAVSADNILYFADGTN--IRMVDR-DGIVTTVIGNHMHKSHWKPIPCEGTLNIEEVSETMRD 401 (482)
Q Consensus 326 ~g-dg~~a~~a~l~~P~giavd~~G~lyvaD~~n--Ir~i~~-~G~i~ti~G~~~~~~~~~~~~~dg~l~v~~~~~~~~~ 401 (482)
.| .++++..++|.+|.||+++++|+|||+|..| ||++++ .+.+++++|.+..+. .||..
T Consensus 791 fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~------~dG~~----------- 853 (1057)
T PLN02919 791 FGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGF------KDGKA----------- 853 (1057)
T ss_pred ccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCC------CCCcc-----------
Confidence 11 1235556789999999999999999999988 999997 577889988664321 01100
Q ss_pred eecCcceEEecccCCCceEEEeeceeeeeeeeeeecccceeeeeeEEcCCCcEEEEeCCCCeeEEeecc
Q psy8782 402 IRHTTGWACYGTGDNDHMTLIHCYGVMQDVVTSVFNNSHFLDVHFSHQDQDLFYFVKELPQKIRDDLDE 470 (482)
Q Consensus 402 l~~p~giav~~~g~n~~~~~~~~~g~~~~~~~~~~n~~~~~~~~i~~~~~g~~yi~d~~n~rIrk~~~~ 470 (482)
..+.+..|.+++++++|.+||+|..||+||++-.+
T Consensus 854 ----------------------------------~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~ 888 (1057)
T PLN02919 854 ----------------------------------LKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLN 888 (1057)
T ss_pred ----------------------------------cccccCCceEEEEeCCCCEEEEECCCCEEEEEECC
Confidence 01222345567777889999999999999997543
No 4
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.94 E-value=5.7e-25 Score=249.58 Aligned_cols=235 Identities=24% Similarity=0.358 Sum_probs=177.1
Q ss_pred CCCCcCcccCCCceEEEEcCCCc-EEEEeC--CcEEEEcC-CCeEEEEEeeCCCcccCCCccccccccccCCceEEEecC
Q psy8782 110 NGEAGPKQRLLAPVALATAPDGS-LFVGDF--NLIRRIMT-DGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGD 185 (482)
Q Consensus 110 ~G~~~~~~~l~~P~glavd~~G~-lyvaD~--~~Irki~~-~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~ 185 (482)
+|.. ..++|+.|.||++|++|+ |||+|. ++||+++. ++.++++++.|..+....++.......+..|.+++++++
T Consensus 615 dG~~-~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~ 693 (1057)
T PLN02919 615 DGSF-EDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPV 693 (1057)
T ss_pred CCch-hccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecC
Confidence 4443 368999999999999876 899998 89999987 578889998876554433332223345788999999998
Q ss_pred CCeEEEEcC-CCe----------EEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcCCCC-EEEEEC--CcEEEEc
Q psy8782 186 GSNIYLKNK-PRI----------IKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGS-LFVGDF--NLIRRIM 251 (482)
Q Consensus 186 g~~lyi~d~-~~~----------i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~-lyv~D~--~~I~~i~ 251 (482)
++.+||+|. ++. +.+++++|.... .++.......|..|.||+++++|. |||+|. ++|++++
T Consensus 694 ~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~-----~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D 768 (1057)
T PLN02919 694 NEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERN-----LNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALD 768 (1057)
T ss_pred CCeEEEEECCCCeEEEEECCCCeEEEEecCCcccc-----CCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEE
Confidence 889999985 233 333444432211 122222446788999999999986 999999 8999999
Q ss_pred CC-CeEEEEEeec------------------cCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEe
Q psy8782 252 TD-GTVRTVVRLN------------------VTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAV 312 (482)
Q Consensus 252 ~~-G~v~~~~g~~------------------~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~va 312 (482)
++ |....+++.. ...+.+|.+|++++ +|.|||+|..||+|++++. .++.+.+++
T Consensus 769 ~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~-dG~LYVADs~N~rIrviD~------~tg~v~tia 841 (1057)
T PLN02919 769 LKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK-DGQIYVADSYNHKIKKLDP------ATKRVTTLA 841 (1057)
T ss_pred CCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeC-CCcEEEEECCCCEEEEEEC------CCCeEEEEe
Confidence 75 4444443311 12467899999999 8999999999999999995 467788999
Q ss_pred cCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEECCC--EEEEcCC
Q psy8782 313 GSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADGTN--IRMVDRD 365 (482)
Q Consensus 313 G~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~~n--Ir~i~~~ 365 (482)
|.|..+ ..|| .+..++|+.|.||+++++|+|||+|..| ||+++.+
T Consensus 842 G~G~~G-------~~dG-~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~ 888 (1057)
T PLN02919 842 GTGKAG-------FKDG-KALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLN 888 (1057)
T ss_pred ccCCcC-------CCCC-cccccccCCceEEEEeCCCCEEEEECCCCEEEEEECC
Confidence 876542 2344 5678899999999999999999999987 9999964
No 5
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.85 E-value=4.4e-19 Score=171.37 Aligned_cols=223 Identities=26% Similarity=0.320 Sum_probs=155.9
Q ss_pred ceEEEEcC-CCcEEEEeC--CcEEEEcCCCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCCCeE
Q psy8782 122 PVALATAP-DGSLFVGDF--NLIRRIMTDGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKPRII 198 (482)
Q Consensus 122 P~glavd~-~G~lyvaD~--~~Irki~~~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~~~i 198 (482)
|.|++.|+ +|.||++|. ++|.|+++++....++.. ..|.|+++...++.+|+++..+..
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~------------------~~~~G~~~~~~~g~l~v~~~~~~~ 63 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDL------------------PGPNGMAFDRPDGRLYVADSGGIA 63 (246)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEES------------------SSEEEEEEECTTSEEEEEETTCEE
T ss_pred CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEec------------------CCCceEEEEccCCEEEEEEcCceE
Confidence 78999998 899999998 899999998766655432 238899999555799999887766
Q ss_pred EEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC----------CcEEEEcCCCeEEEEEeeccCCCC
Q psy8782 199 KTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF----------NLIRRIMTDGTVRTVVRLNVTRVA 268 (482)
Q Consensus 199 ~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~----------~~I~~i~~~G~v~~~~g~~~~~~~ 268 (482)
..-..+++....... + .....+..|+++++|++|+|||+|. .+|.+++++|++..++. .+.
T Consensus 64 ~~d~~~g~~~~~~~~-~----~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~~----~~~ 134 (246)
T PF08450_consen 64 VVDPDTGKVTVLADL-P----DGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGKVTVVAD----GLG 134 (246)
T ss_dssp EEETTTTEEEEEEEE-E----TTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSEEEEEEE----EES
T ss_pred EEecCCCcEEEEeec-c----CCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCCeEEEEec----Ccc
Confidence 655555654322100 0 0112678899999999999999997 24999999988777653 478
Q ss_pred ceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCc---EEEEecCCcccCCCCCCccCCCccccccccCCcceEEE
Q psy8782 269 YRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYN---VEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAV 345 (482)
Q Consensus 269 ~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~---~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giav 345 (482)
.|+||+++|++..|||+|+.+++|++++... ..+. ..+++.. .+ ....|.||++
T Consensus 135 ~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~----~~~~~~~~~~~~~~-------------~~------~~g~pDG~~v 191 (246)
T PF08450_consen 135 FPNGIAFSPDGKTLYVADSFNGRIWRFDLDA----DGGELSNRRVFIDF-------------PG------GPGYPDGLAV 191 (246)
T ss_dssp SEEEEEEETTSSEEEEEETTTTEEEEEEEET----TTCCEEEEEEEEE--------------SS------SSCEEEEEEE
T ss_pred cccceEECCcchheeecccccceeEEEeccc----cccceeeeeeEEEc-------------CC------CCcCCCcceE
Confidence 8999999995558999999999999999642 1221 2223211 00 1146999999
Q ss_pred eCCCcEEEEECCC--EEEEcCCCcEEEEEcCCCCCCCCCcC-CCC-ceEEecc
Q psy8782 346 SADNILYFADGTN--IRMVDRDGIVTTVIGNHMHKSHWKPI-PCE-GTLNIEE 394 (482)
Q Consensus 346 d~~G~lyvaD~~n--Ir~i~~~G~i~ti~G~~~~~~~~~~~-~~d-g~l~v~~ 394 (482)
|++|+||||+..+ |++++++|++...+..+...+...++ ..+ ..|||..
T Consensus 192 D~~G~l~va~~~~~~I~~~~p~G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 192 DSDGNLWVADWGGGRIVVFDPDGKLLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp BTTS-EEEEEETTTEEEEEETTSCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred cCCCCEEEEEcCCCEEEEECCCccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 9999999998755 99999999988777666433332333 123 3565543
No 6
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.61 E-value=1.6e-13 Score=132.55 Aligned_cols=221 Identities=24% Similarity=0.299 Sum_probs=150.6
Q ss_pred CCeEEec-CCceEEEeeCCCeEEEEeccCccCCCCCcCCCCCCcCcccCCCceEEEEc-CCCcEEEEeCCcEEEEcC-CC
Q psy8782 72 EGILQKG-DGSNIYLKNKPRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATA-PDGSLFVGDFNLIRRIMT-DG 148 (482)
Q Consensus 72 ~gil~~g-dG~~~~~~~~~~~i~tv~G~G~~~~~~~~~~~G~~~~~~~l~~P~glavd-~~G~lyvaD~~~Irki~~-~G 148 (482)
+|+++.. +|+.++++-....|..+.-.+... ....+..|.|++++ ++|.|||++...++++++ +|
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~------------~~~~~~~~~G~~~~~~~g~l~v~~~~~~~~~d~~~g 70 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEV------------EVIDLPGPNGMAFDRPDGRLYVADSGGIAVVDPDTG 70 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEE------------EEEESSSEEEEEEECTTSEEEEEETTCEEEEETTTT
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeE------------EEEecCCCceEEEEccCCEEEEEEcCceEEEecCCC
Confidence 4666665 566666666666676665433221 12344459999999 899999999988888885 58
Q ss_pred eEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCC---------CeEEEEcCCCccccCCCcCCCCCC
Q psy8782 149 TVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKP---------RIIKTTLGDGHQRPLDCKDCNGEA 219 (482)
Q Consensus 149 ~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~---------~~i~~~~g~G~~~~~~~~~~~g~~ 219 (482)
+++.++...... .....|++++++++| ++|+++.. +.+..+...++...
T Consensus 71 ~~~~~~~~~~~~-----------~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~---------- 128 (246)
T PF08450_consen 71 KVTVLADLPDGG-----------VPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPGSVYRIDPDGKVTV---------- 128 (246)
T ss_dssp EEEEEEEEETTC-----------SCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETTSEEEE----------
T ss_pred cEEEEeeccCCC-----------cccCCCceEEEcCCC-CEEEEecCCCccccccccceEEECCCCeEEE----------
Confidence 888877551100 013568999999987 59998742 34555555555432
Q ss_pred CceeecCCccEEEEcCCCC-EEEEEC--CcEEEEcCC--Ce-EE--EEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCE
Q psy8782 220 GPKQRLLAPVALATAPDGS-LFVGDF--NLIRRIMTD--GT-VR--TVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQ 291 (482)
Q Consensus 220 ~~~~~l~~P~giavd~~G~-lyv~D~--~~I~~i~~~--G~-v~--~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~ 291 (482)
....+..|+||+++++|. |||+|+ ++|++++.+ +. +. .++.........|.|+++|+ +|+|||++..+++
T Consensus 129 -~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~-~G~l~va~~~~~~ 206 (246)
T PF08450_consen 129 -VADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDS-DGNLWVADWGGGR 206 (246)
T ss_dssp -EEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBT-TS-EEEEEETTTE
T ss_pred -EecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcC-CCCEEEEEcCCCE
Confidence 346788999999999994 999999 899999853 43 32 22221122335799999999 9999999999999
Q ss_pred EEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEe-C-CCcEEEEEC
Q psy8782 292 ILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVS-A-DNILYFADG 356 (482)
Q Consensus 292 I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd-~-~G~lyvaD~ 356 (482)
|++++ ++|.+....-.+ ...|..++|. + .+.|||+-+
T Consensus 207 I~~~~-------p~G~~~~~i~~p---------------------~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 207 IVVFD-------PDGKLLREIELP---------------------VPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp EEEEE-------TTSCEEEEEE-S---------------------SSSEEEEEEESTTSSEEEEEEB
T ss_pred EEEEC-------CCccEEEEEcCC---------------------CCCEEEEEEECCCCCEEEEEeC
Confidence 99999 678865544221 2368999994 3 367999864
No 7
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=99.49 E-value=1.4e-11 Score=126.04 Aligned_cols=104 Identities=23% Similarity=0.323 Sum_probs=75.7
Q ss_pred ecCCccEEEEcCCCCEEEEECCcEEEE-cCCC------eEEEEEeec-cC---CCCceeeEEEeCCCCeEEEEeCCC---
Q psy8782 224 RLLAPVALATAPDGSLFVGDFNLIRRI-MTDG------TVRTVVRLN-VT---RVAYRYHIAYSPLDGTLYISDPES--- 289 (482)
Q Consensus 224 ~l~~P~giavd~~G~lyv~D~~~I~~i-~~~G------~v~~~~g~~-~~---~~~~p~giavd~~~g~lyVaD~~n--- 289 (482)
.+..|.||++.++| |||++..+|+++ +.+| +...++..- .. ....+++++++| +|.|||++..+
T Consensus 70 ~l~~p~Gi~~~~~G-lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~ 147 (367)
T TIGR02604 70 ELSMVTGLAVAVGG-VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLAS 147 (367)
T ss_pred CCCCccceeEecCC-EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCc
Confidence 46689999999989 999999889888 4433 433444321 11 134588999999 99999988732
Q ss_pred ----------------CEEEEEecCCccCCCCC-cEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEE
Q psy8782 290 ----------------HQILRVKNAMDFSAPDY-NVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILY 352 (482)
Q Consensus 290 ----------------~~I~~~~~~~~~~~~~g-~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~ly 352 (482)
++|+|++ +++ .+++++. | +.+|.|+++|++|+||
T Consensus 148 ~~~~~~~~~~~~~~~~g~i~r~~-------pdg~~~e~~a~---------------G-------~rnp~Gl~~d~~G~l~ 198 (367)
T TIGR02604 148 KVTRPGTSDESRQGLGGGLFRYN-------PDGGKLRVVAH---------------G-------FQNPYGHSVDSWGDVF 198 (367)
T ss_pred eeccCCCccCcccccCceEEEEe-------cCCCeEEEEec---------------C-------cCCCccceECCCCCEE
Confidence 4677877 344 3444431 2 7899999999999999
Q ss_pred EEECCC
Q psy8782 353 FADGTN 358 (482)
Q Consensus 353 vaD~~n 358 (482)
++|..+
T Consensus 199 ~tdn~~ 204 (367)
T TIGR02604 199 FCDNDD 204 (367)
T ss_pred EEccCC
Confidence 999865
No 8
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.46 E-value=2.5e-11 Score=120.08 Aligned_cols=206 Identities=22% Similarity=0.257 Sum_probs=129.7
Q ss_pred ceEEEEcCC-CcEEEEeC--CcEEEEcCC-CeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCCC-
Q psy8782 122 PVALATAPD-GSLFVGDF--NLIRRIMTD-GTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKPR- 196 (482)
Q Consensus 122 P~glavd~~-G~lyvaD~--~~Irki~~~-G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~~- 196 (482)
..|...+++ +.||++|. ++|.+++++ |....+.-.+. -+.+..++..+ .|..++..-
T Consensus 27 gEgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~-----------------~~~~~~~d~~g-~Lv~~~~g~~ 88 (307)
T COG3386 27 GEGPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPGG-----------------FSSGALIDAGG-RLIACEHGVR 88 (307)
T ss_pred ccCccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCCC-----------------cccceeecCCC-eEEEEccccE
Confidence 344445555 45999998 899999985 66665442110 12333333332 444433222
Q ss_pred eEEEEcCCCcc-ccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEECC-------------cEEEEcCCCeEEEEEee
Q psy8782 197 IIKTTLGDGHQ-RPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDFN-------------LIRRIMTDGTVRTVVRL 262 (482)
Q Consensus 197 ~i~~~~g~G~~-~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~~-------------~I~~i~~~G~v~~~~g~ 262 (482)
.+.. .++.. ..... .....+++.|+++.++++|.+||+|.+ +++|++|+|.+.+++
T Consensus 89 ~~~~--~~~~~~t~~~~------~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~-- 158 (307)
T COG3386 89 LLDP--DTGGKITLLAE------PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLL-- 158 (307)
T ss_pred EEec--cCCceeEEecc------ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEee--
Confidence 1111 11111 10000 002356789999999999999999876 499999999888876
Q ss_pred ccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcce
Q psy8782 263 NVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKG 342 (482)
Q Consensus 263 ~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~g 342 (482)
...+..|+|||++|++..||++|+..++|++++.....-...+....+.- .... ..|.|
T Consensus 159 -~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~-----------~~~~---------G~PDG 217 (307)
T COG3386 159 -DDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDF-----------DEEP---------GLPDG 217 (307)
T ss_pred -cCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEc-----------cCCC---------CCCCc
Confidence 33478899999999556999999999999999853100001111101100 0012 36999
Q ss_pred EEEeCCCcEEEEECC---CEEEEcCCCcEEEEEcCCC
Q psy8782 343 VAVSADNILYFADGT---NIRMVDRDGIVTTVIGNHM 376 (482)
Q Consensus 343 iavd~~G~lyvaD~~---nIr~i~~~G~i~ti~G~~~ 376 (482)
+++|++|+||++-.. .|.+++|+|+....+-.+.
T Consensus 218 ~~vDadG~lw~~a~~~g~~v~~~~pdG~l~~~i~lP~ 254 (307)
T COG3386 218 MAVDADGNLWVAAVWGGGRVVRFNPDGKLLGEIKLPV 254 (307)
T ss_pred eEEeCCCCEEEecccCCceEEEECCCCcEEEEEECCC
Confidence 999999999965443 4999999999776665553
No 9
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=99.31 E-value=1.4e-09 Score=102.27 Aligned_cols=194 Identities=19% Similarity=0.187 Sum_probs=139.4
Q ss_pred CceEEEEcCCCcEEEEeC--CcEEEEcC-CCeEEEEE-eeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCCC
Q psy8782 121 APVALATAPDGSLFVGDF--NLIRRIMT-DGTVRTVV-RLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKPR 196 (482)
Q Consensus 121 ~P~glavd~~G~lyvaD~--~~Irki~~-~G~v~ti~-g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~~ 196 (482)
.|..|+.++||.+|+++. +.|-+++| +|++.++. |.| .+|.+|.+.+|+ ..||+|...
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~G-----------------a~Phgiv~gpdg-~~Witd~~~ 124 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSG-----------------ASPHGIVVGPDG-SAWITDTGL 124 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceEEEecCCC-----------------CCCceEEECCCC-CeeEecCcc
Confidence 588999999999999997 88999998 59998865 333 469999999988 788888765
Q ss_pred eEEEEcC-CCccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC-CcEEEEcCCCeEEEEEeeccCCCCceeeEE
Q psy8782 197 IIKTTLG-DGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF-NLIRRIMTDGTVRTVVRLNVTRVAYRYHIA 274 (482)
Q Consensus 197 ~i~~~~g-~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~-~~I~~i~~~G~v~~~~g~~~~~~~~p~gia 274 (482)
.|..+.. ++....+..... ...+.| +...+|++|+|||+.. ..--|+||.-.+..++.. .+-..|+||+
T Consensus 125 aI~R~dpkt~evt~f~lp~~----~a~~nl---et~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpa--PqG~gpyGi~ 195 (353)
T COG4257 125 AIGRLDPKTLEVTRFPLPLE----HADANL---ETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPA--PQGGGPYGIC 195 (353)
T ss_pred eeEEecCcccceEEeecccc----cCCCcc---cceeeCCCccEEEeeccccceecCcccCceeeecc--CCCCCCcceE
Confidence 5555544 555433221100 011222 3457899999999998 555588888777777653 3455799999
Q ss_pred EeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEE
Q psy8782 275 YSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFA 354 (482)
Q Consensus 275 vd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyva 354 (482)
+.| +|.+|++....+.|-+++. .++.-+.+- .-+++-+.-+.|-.|+.|.++++
T Consensus 196 atp-dGsvwyaslagnaiaridp------~~~~aev~p-------------------~P~~~~~gsRriwsdpig~~wit 249 (353)
T COG4257 196 ATP-DGSVWYASLAGNAIARIDP------FAGHAEVVP-------------------QPNALKAGSRRIWSDPIGRAWIT 249 (353)
T ss_pred ECC-CCcEEEEeccccceEEccc------ccCCcceec-------------------CCCcccccccccccCccCcEEEe
Confidence 999 9999999999999999995 233322221 11222233467889999999999
Q ss_pred ECCC--EEEEcCCCc
Q psy8782 355 DGTN--IRMVDRDGI 367 (482)
Q Consensus 355 D~~n--Ir~i~~~G~ 367 (482)
+.++ +.++||.-.
T Consensus 250 twg~g~l~rfdPs~~ 264 (353)
T COG4257 250 TWGTGSLHRFDPSVT 264 (353)
T ss_pred ccCCceeeEeCcccc
Confidence 9988 888887544
No 10
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=99.21 E-value=4e-09 Score=99.21 Aligned_cols=225 Identities=18% Similarity=0.137 Sum_probs=136.6
Q ss_pred CCceEEEEcCCCcEEEEeC-CcEEEEcC-CCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCCCe
Q psy8782 120 LAPVALATAPDGSLFVGDF-NLIRRIMT-DGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKPRI 197 (482)
Q Consensus 120 ~~P~glavd~~G~lyvaD~-~~Irki~~-~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~~~ 197 (482)
.+|.+|.++|||+.||+|. +.|+|+++ ++.++++--...... + +-+-..+|+.| +||++.+.+.
T Consensus 104 a~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp~~~a~------~-------nlet~vfD~~G-~lWFt~q~G~ 169 (353)
T COG4257 104 ASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLPLEHAD------A-------NLETAVFDPWG-NLWFTGQIGA 169 (353)
T ss_pred CCCceEEECCCCCeeEecCcceeEEecCcccceEEeecccccCC------C-------cccceeeCCCc-cEEEeecccc
Confidence 4799999999999999999 79999998 678877543222111 0 11223344444 4554433211
Q ss_pred EEEE-cCCCccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC--CcEEEEcCCCeEEEEEeeccCCCCceeeEE
Q psy8782 198 IKTT-LGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF--NLIRRIMTDGTVRTVVRLNVTRVAYRYHIA 274 (482)
Q Consensus 198 i~~~-~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~--~~I~~i~~~G~v~~~~g~~~~~~~~p~gia 274 (482)
--.+ ...+....+. .-+=..|.||++.|||++|++.. +.|-++||---...++......-+.-..|-
T Consensus 170 yGrLdPa~~~i~vfp----------aPqG~gpyGi~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriw 239 (353)
T COG4257 170 YGRLDPARNVISVFP----------APQGGGPYGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIW 239 (353)
T ss_pred ceecCcccCceeeec----------cCCCCCCcceEECCCCcEEEEeccccceEEcccccCCcceecCCCcccccccccc
Confidence 1111 0011111000 01223699999999999999987 899999964323222221111122335677
Q ss_pred EeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEE
Q psy8782 275 YSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFA 354 (482)
Q Consensus 275 vd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyva 354 (482)
.|| .|.+++++.++.++.+++.. +....- ..+ ...-.+|..|-||..|.+|++
T Consensus 240 sdp-ig~~wittwg~g~l~rfdPs------~~sW~e------ypL--------------Pgs~arpys~rVD~~grVW~s 292 (353)
T COG4257 240 SDP-IGRAWITTWGTGSLHRFDPS------VTSWIE------YPL--------------PGSKARPYSMRVDRHGRVWLS 292 (353)
T ss_pred cCc-cCcEEEeccCCceeeEeCcc------ccccee------eeC--------------CCCCCCcceeeeccCCcEEee
Confidence 888 89999999999999999952 111110 001 112347899999999999998
Q ss_pred ECCC--EEEEcCCCcEEEEEcCCCCCCCCCcCC-CCceEEeccc
Q psy8782 355 DGTN--IRMVDRDGIVTTVIGNHMHKSHWKPIP-CEGTLNIEEV 395 (482)
Q Consensus 355 D~~n--Ir~i~~~G~i~ti~G~~~~~~~~~~~~-~dg~l~v~~~ 395 (482)
|... |.++|+.-.--|+.......+...++. ..|.+...|.
T Consensus 293 ea~agai~rfdpeta~ftv~p~pr~n~gn~ql~gr~ge~W~~e~ 336 (353)
T COG4257 293 EADAGAIGRFDPETARFTVLPIPRPNSGNIQLDGRPGELWFTEA 336 (353)
T ss_pred ccccCceeecCcccceEEEecCCCCCCCceeccCCCCceeeccc
Confidence 8755 999998766555555544433333333 3345666554
No 11
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=99.20 E-value=4.7e-09 Score=105.87 Aligned_cols=160 Identities=28% Similarity=0.361 Sum_probs=94.8
Q ss_pred CCCceEEEEcCCCcEEEEeC-CcEEEEcCCCeE-EEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCCC
Q psy8782 119 LLAPVALATAPDGSLFVGDF-NLIRRIMTDGTV-RTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKPR 196 (482)
Q Consensus 119 l~~P~glavd~~G~lyvaD~-~~Irki~~~G~v-~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~~ 196 (482)
|+.|++|++.|||.|||++. .+|+++..+|.. ..+......
T Consensus 1 L~~P~~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v------------------------------------- 43 (331)
T PF07995_consen 1 LNNPRSMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEV------------------------------------- 43 (331)
T ss_dssp ESSEEEEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TTT-------------------------------------
T ss_pred CCCceEEEEeCCCcEEEEeCCceEEEEeCCCcCcceecccccc-------------------------------------
Confidence 57899999999999999999 999999988887 334322110
Q ss_pred eEEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcCC----CCEEEEEC----------CcEEEEcCC-C--e---E
Q psy8782 197 IIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPD----GSLFVGDF----------NLIRRIMTD-G--T---V 256 (482)
Q Consensus 197 ~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~----G~lyv~D~----------~~I~~i~~~-G--~---v 256 (482)
.......+.+||++|+ +.||++-. ++|.|+..+ + . .
T Consensus 44 ------------------------~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~ 99 (331)
T PF07995_consen 44 ------------------------FADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSE 99 (331)
T ss_dssp ------------------------BTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEE
T ss_pred ------------------------cccccCCcccceeccccCCCCEEEEEEEcccCCCCCcceeeEEEeccCCccccccc
Confidence 0011224567888874 78888766 357776532 2 1 2
Q ss_pred EEEE-eecc--CCCCceeeEEEeCCCCeEEEEeC-------------CCCEEEEEecCCccCCCCCcEEEEecCCcccCC
Q psy8782 257 RTVV-RLNV--TRVAYRYHIAYSPLDGTLYISDP-------------ESHQILRVKNAMDFSAPDYNVEPAVGSGERCLP 320 (482)
Q Consensus 257 ~~~~-g~~~--~~~~~p~giavd~~~g~lyVaD~-------------~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~ 320 (482)
..++ +... .....-..|+++| +|.|||+-- ..++|+|++. +|++ - ...|
T Consensus 100 ~~l~~~~p~~~~~~H~g~~l~fgp-DG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~-------dG~~--p-----~dnP 164 (331)
T PF07995_consen 100 EVLVTGLPDTSSGNHNGGGLAFGP-DGKLYVSVGDGGNDDNAQDPNSLRGKILRIDP-------DGSI--P-----ADNP 164 (331)
T ss_dssp EEEEEEEES-CSSSS-EEEEEE-T-TSEEEEEEB-TTTGGGGCSTTSSTTEEEEEET-------TSSB--------TTST
T ss_pred eEEEEEeCCCCCCCCCCccccCCC-CCcEEEEeCCCCCcccccccccccceEEEecc-------cCcC--C-----CCCc
Confidence 2222 2111 2334456799999 899999832 2357888873 4431 0 0001
Q ss_pred CCCCccCCC---ccccccccCCcceEEEeCC-CcEEEEECCC
Q psy8782 321 GDEAHCGDG---APARDAKLAYPKGVAVSAD-NILYFADGTN 358 (482)
Q Consensus 321 g~~~~~gdg---~~a~~a~l~~P~giavd~~-G~lyvaD~~n 358 (482)
+.++. ..--..-|.+|.++++|+. |.||++|.+.
T Consensus 165 ----~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~ 202 (331)
T PF07995_consen 165 ----FVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGP 202 (331)
T ss_dssp ----TTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-S
T ss_pred ----cccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCC
Confidence 11100 0111233899999999999 9999999764
No 12
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=99.18 E-value=3.3e-08 Score=101.77 Aligned_cols=244 Identities=21% Similarity=0.262 Sum_probs=157.8
Q ss_pred cCCCeEEecCCceEEEeeCCCe-EEEEeccCccCCCCCcCCCCCCcCcccCCCceEEEEcCCCc-EEEEeC--CcEEEEc
Q psy8782 70 FHEGILQKGDGSNIYLKNKPRI-IKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGS-LFVGDF--NLIRRIM 145 (482)
Q Consensus 70 ~~~gil~~gdG~~~~~~~~~~~-i~tv~G~G~~~~~~~~~~~G~~~~~~~l~~P~glavd~~G~-lyvaD~--~~Irki~ 145 (482)
.+.++.+..+|..+.+...... +..+. .. .....|. ....+..|.++++.++|+ +|+.+. +.|++|+
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~-~~-~n~~~~~-------~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid 102 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVID-AT-SNTVTQS-------LSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVID 102 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecc-cc-cceeeee-------ccCCCccccceeeCCCCCeEEEecCCCCeEEEEc
Confidence 5667777777766665544333 22221 11 1111111 112227899999999988 999995 8999998
Q ss_pred CC-CeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcC---CCeEEEEcCC-CccccCCCcCCCCCCC
Q psy8782 146 TD-GTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNK---PRIIKTTLGD-GHQRPLDCKDCNGEAG 220 (482)
Q Consensus 146 ~~-G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~---~~~i~~~~g~-G~~~~~~~~~~~g~~~ 220 (482)
.+ -.+......| ..|.+++++++++.+|+++. ++.+..+... ++...
T Consensus 103 ~~~~~~~~~~~vG-----------------~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~----------- 154 (381)
T COG3391 103 TATNTVLGSIPVG-----------------LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA----------- 154 (381)
T ss_pred CcccceeeEeeec-----------------cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE-----------
Confidence 33 2233333222 26999999999999999987 3555555443 22211
Q ss_pred ceeecCCccEEEEcCCCC-EEEEEC--CcEEEEcCCCeEEEEEee---ccCCCCceeeEEEeCCCCeEEEEeCCC--CEE
Q psy8782 221 PKQRLLAPVALATAPDGS-LFVGDF--NLIRRIMTDGTVRTVVRL---NVTRVAYRYHIAYSPLDGTLYISDPES--HQI 292 (482)
Q Consensus 221 ~~~~l~~P~giavd~~G~-lyv~D~--~~I~~i~~~G~v~~~~g~---~~~~~~~p~giavd~~~g~lyVaD~~n--~~I 292 (482)
....=..|.+++++|+|+ +|+++. ++|..++.++..... +. .......|.+++++++...+||++..+ ++|
T Consensus 155 ~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v 233 (381)
T COG3391 155 TIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNV 233 (381)
T ss_pred EEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceE
Confidence 000001689999999997 999996 899999987764443 22 234567899999999555799999988 699
Q ss_pred EEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCc-EEEEECCC--EEEEcCC-CcE
Q psy8782 293 LRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNI-LYFADGTN--IRMVDRD-GIV 368 (482)
Q Consensus 293 ~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~-lyvaD~~n--Ir~i~~~-G~i 368 (482)
.+++.. .+.+.... ....++ .|.+++++|+|. +||++... +.++|.. ..+
T Consensus 234 ~~id~~------~~~v~~~~-------------------~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v 287 (381)
T COG3391 234 LKIDTA------TGNVTATD-------------------LPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRV 287 (381)
T ss_pred EEEeCC------CceEEEec-------------------cccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCce
Confidence 999852 22222110 112346 899999999986 77876653 8888753 345
Q ss_pred EEEEcCCCC
Q psy8782 369 TTVIGNHMH 377 (482)
Q Consensus 369 ~ti~G~~~~ 377 (482)
......+..
T Consensus 288 ~~~~~~~~~ 296 (381)
T COG3391 288 VKTGPTGNE 296 (381)
T ss_pred eeeeccccc
Confidence 444444433
No 13
>KOG1520|consensus
Probab=99.14 E-value=1.1e-09 Score=108.18 Aligned_cols=153 Identities=15% Similarity=0.199 Sum_probs=107.8
Q ss_pred CcccCCCceEEEEcCCC-cEEEEeC-CcEEEEcCCCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEE
Q psy8782 115 PKQRLLAPVALATAPDG-SLFVGDF-NLIRRIMTDGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLK 192 (482)
Q Consensus 115 ~~~~l~~P~glavd~~G-~lyvaD~-~~Irki~~~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~ 192 (482)
.....-+|-||+++..| +|||||. -.+.+|+++|...+..-...
T Consensus 110 ~e~~CGRPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~a~~l~~~~---------------------------------- 155 (376)
T KOG1520|consen 110 TEPLCGRPLGIRFDKKGGDLYVADAYLGLLKVGPEGGLAELLADEA---------------------------------- 155 (376)
T ss_pred cccccCCcceEEeccCCCeEEEEecceeeEEECCCCCcceeccccc----------------------------------
Confidence 35566799999999987 9999999 79999999887644331110
Q ss_pred cCCCeEEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC-------------------CcEEEEcCC
Q psy8782 193 NKPRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF-------------------NLIRRIMTD 253 (482)
Q Consensus 193 d~~~~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~-------------------~~I~~i~~~ 253 (482)
....+....++.++++|.||++|+ +|+.|+|+.
T Consensus 156 ----------------------------~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~ 207 (376)
T KOG1520|consen 156 ----------------------------EGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPS 207 (376)
T ss_pred ----------------------------cCeeeeecCceeEcCCCeEEEeccccccchhheEEeeecCCCccceEEecCc
Confidence 123444566777777778888776 245555555
Q ss_pred CeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCcccc
Q psy8782 254 GTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPAR 333 (482)
Q Consensus 254 G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~ 333 (482)
-+.++++ ...+..|+|++++|+...+.+|++...||.|+-..+. .-|+.++++ +|
T Consensus 208 tK~~~VL---ld~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~---k~gt~EvFa---------------~~---- 262 (376)
T KOG1520|consen 208 TKVTKVL---LDGLYFPNGLALSPDGSFVLVAETTTARIKRYWIKGP---KAGTSEVFA---------------EG---- 262 (376)
T ss_pred ccchhhh---hhcccccccccCCCCCCEEEEEeeccceeeeeEecCC---ccCchhhHh---------------hc----
Confidence 5544443 4578899999999977799999999999999985331 122223332 11
Q ss_pred ccccCCcceEEEeCCCcEEEEEC
Q psy8782 334 DAKLAYPKGVAVSADNILYFADG 356 (482)
Q Consensus 334 ~a~l~~P~giavd~~G~lyvaD~ 356 (482)
.-..|..|-.+++|++||+=.
T Consensus 263 --LPG~PDNIR~~~~G~fWVal~ 283 (376)
T KOG1520|consen 263 --LPGYPDNIRRDSTGHFWVALH 283 (376)
T ss_pred --CCCCCcceeECCCCCEEEEEe
Confidence 124799999999999999864
No 14
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.10 E-value=1e-07 Score=96.82 Aligned_cols=254 Identities=23% Similarity=0.266 Sum_probs=147.2
Q ss_pred cCCCceEEEEcCCCc-EEEEeC-----CcE--EEEcCC-CeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCe
Q psy8782 118 RLLAPVALATAPDGS-LFVGDF-----NLI--RRIMTD-GTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSN 188 (482)
Q Consensus 118 ~l~~P~glavd~~G~-lyvaD~-----~~I--rki~~~-G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~ 188 (482)
....|..|++++++. ||+++. ..| .+++++ |+++.+-..... -..|..+.+++++..
T Consensus 35 ~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~--------------g~~p~~i~~~~~g~~ 100 (345)
T PF10282_consen 35 EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSG--------------GSSPCHIAVDPDGRF 100 (345)
T ss_dssp ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEES--------------SSCEEEEEECTTSSE
T ss_pred CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccC--------------CCCcEEEEEecCCCE
Confidence 456799999999876 888876 244 455666 766554322111 245888999999999
Q ss_pred EEEEcC-CCeEEEE--cCCCccccCC-CcCC--CCCCCceeecCCccEEEEcCCC-CEEEEEC--CcEEEEcCC---CeE
Q psy8782 189 IYLKNK-PRIIKTT--LGDGHQRPLD-CKDC--NGEAGPKQRLLAPVALATAPDG-SLFVGDF--NLIRRIMTD---GTV 256 (482)
Q Consensus 189 lyi~d~-~~~i~~~--~g~G~~~~~~-~~~~--~g~~~~~~~l~~P~giavd~~G-~lyv~D~--~~I~~i~~~---G~v 256 (482)
||+++. .+.+..+ ..+|...... .... .+.......-..|+.+.++|+| .|||+|. ++|+.++.+ +++
T Consensus 101 l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l 180 (345)
T PF10282_consen 101 LYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKL 180 (345)
T ss_dssp EEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TE
T ss_pred EEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceE
Confidence 999985 4444433 2334332110 0000 0000011234579999999998 5999999 788877643 235
Q ss_pred EEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccc
Q psy8782 257 RTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAK 336 (482)
Q Consensus 257 ~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~ 336 (482)
..........-..|.+|+++|+...+||+....+.|..++... .+|.++.+.-.... | .+ ...
T Consensus 181 ~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~----~~g~~~~~~~~~~~--~-------~~----~~~ 243 (345)
T PF10282_consen 181 TPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDP----SDGSLTEIQTISTL--P-------EG----FTG 243 (345)
T ss_dssp EEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET----TTTEEEEEEEEESC--E-------TT----SCS
T ss_pred EEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecc----cCCceeEEEEeeec--c-------cc----ccc
Confidence 4433222344567999999996669999999999999998642 35655544321110 0 00 011
Q ss_pred cCCcceEEEeCCCc-EEEEECCC--EE--EEcC-CCcEEEEE--cCCCCCCCCCcCCCCc-eEEeccc-cceeEEe
Q psy8782 337 LAYPKGVAVSADNI-LYFADGTN--IR--MVDR-DGIVTTVI--GNHMHKSHWKPIPCEG-TLNIEEV-SETMRDI 402 (482)
Q Consensus 337 l~~P~giavd~~G~-lyvaD~~n--Ir--~i~~-~G~i~ti~--G~~~~~~~~~~~~~dg-~l~v~~~-~~~~~~l 402 (482)
-..|.+|+++++|. |||+..+. |. .+++ +|.++.+- ..++..|....++++| .|++... .+++..+
T Consensus 244 ~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf 319 (345)
T PF10282_consen 244 ENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVF 319 (345)
T ss_dssp SSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred cCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEE
Confidence 24799999999986 89999876 44 4433 57765432 2223334445566677 3555432 3344433
No 15
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.05 E-value=1.8e-07 Score=94.20 Aligned_cols=235 Identities=19% Similarity=0.198 Sum_probs=136.7
Q ss_pred CCceEEEEcCCCc-EEEEeC--CcEEE--EcCCCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcC
Q psy8782 120 LAPVALATAPDGS-LFVGDF--NLIRR--IMTDGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNK 194 (482)
Q Consensus 120 ~~P~glavd~~G~-lyvaD~--~~Irk--i~~~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~ 194 (482)
..|..|+++|+|. ||++.. +.|.. ++.+|.++.+.... ...+|.+++++++++.+|+++.
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~---------------~~~~p~~i~~~~~g~~l~v~~~ 99 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP---------------LPGSPTHISTDHQGRFLFSASY 99 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec---------------CCCCceEEEECCCCCEEEEEEc
Confidence 3588899999987 788876 66654 44456554322110 1125889999999999999864
Q ss_pred -CCeEEEEcC--CCccccCCCcCCCCCCCceeecCCccEEEEcCCC-CEEEEEC--CcEEEEcC--CCeEEEEEe--ecc
Q psy8782 195 -PRIIKTTLG--DGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDG-SLFVGDF--NLIRRIMT--DGTVRTVVR--LNV 264 (482)
Q Consensus 195 -~~~i~~~~g--~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G-~lyv~D~--~~I~~i~~--~G~v~~~~g--~~~ 264 (482)
.+.+.++.- +|..... .........|.+++++|+| .||+++. ++|+.++. +|.+..... ...
T Consensus 100 ~~~~v~v~~~~~~g~~~~~--------~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~ 171 (330)
T PRK11028 100 NANCVSVSPLDKDGIPVAP--------IQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTT 171 (330)
T ss_pred CCCeEEEEEECCCCCCCCc--------eeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceec
Confidence 455554422 2221100 0011123568999999988 6888988 77777764 454421100 001
Q ss_pred CCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEE
Q psy8782 265 TRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVA 344 (482)
Q Consensus 265 ~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~gia 344 (482)
..-..|.+++++|++..|||++...+.|..++... .++.++.+.-.. ..|. ...+ -.+|.+|+
T Consensus 172 ~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~----~~~~~~~~~~~~--~~p~----~~~~-------~~~~~~i~ 234 (330)
T PRK11028 172 VEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKD----PHGEIECVQTLD--MMPA----DFSD-------TRWAADIH 234 (330)
T ss_pred CCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeC----CCCCEEEEEEEe--cCCC----cCCC-------CccceeEE
Confidence 11246899999996668999999899998887531 134443321100 0000 0001 13577899
Q ss_pred EeCCCc-EEEEECC-C-EEEE--cCCCcEEEEEcCCC--CCCCCCcCCCCc-eEEecc
Q psy8782 345 VSADNI-LYFADGT-N-IRMV--DRDGIVTTVIGNHM--HKSHWKPIPCEG-TLNIEE 394 (482)
Q Consensus 345 vd~~G~-lyvaD~~-n-Ir~i--~~~G~i~ti~G~~~--~~~~~~~~~~dg-~l~v~~ 394 (482)
++++|. ||+++.. + |.++ ++++...++.+.-. ..+....+++|| .||++.
T Consensus 235 ~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~ 292 (330)
T PRK11028 235 ITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAG 292 (330)
T ss_pred ECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEE
Confidence 999986 8999764 3 5555 45664333333211 223345566777 566644
No 16
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.03 E-value=3.4e-07 Score=92.20 Aligned_cols=158 Identities=13% Similarity=0.149 Sum_probs=96.7
Q ss_pred CCceEEEecCCCeEEEEcC-CCeEEEEc--CCCccccCCCcCCCCCCCceeecCCccEEEEcCCCC-EEEEEC--CcEEE
Q psy8782 176 SPSGILQKGDGSNIYLKNK-PRIIKTTL--GDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGS-LFVGDF--NLIRR 249 (482)
Q Consensus 176 ~P~gi~~~~~g~~lyi~d~-~~~i~~~~--g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~-lyv~D~--~~I~~ 249 (482)
.|..+.+++++..||++.. ...+.++. .+|...... .......|..|+++|+|. ||++.. +.|..
T Consensus 36 ~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~---------~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v 106 (330)
T PRK11028 36 QVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAA---------ESPLPGSPTHISTDHQGRFLFSASYNANCVSV 106 (330)
T ss_pred CCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEee---------eecCCCCceEEEECCCCCEEEEEEcCCCeEEE
Confidence 5788999999999999754 34444332 233321110 011123689999999985 888876 66666
Q ss_pred Ec--CCCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccC
Q psy8782 250 IM--TDGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCG 327 (482)
Q Consensus 250 i~--~~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~g 327 (482)
++ .+|.+.+.... ......|.+++++|+...|||++...++|..++.. ..|.+.........
T Consensus 107 ~~~~~~g~~~~~~~~-~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~-----~~g~l~~~~~~~~~---------- 170 (330)
T PRK11028 107 SPLDKDGIPVAPIQI-IEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLS-----DDGHLVAQEPAEVT---------- 170 (330)
T ss_pred EEECCCCCCCCceee-ccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEEC-----CCCcccccCCCcee----------
Confidence 64 45654333221 12235689999999666899999999999999852 12322110000000
Q ss_pred CCccccccccCCcceEEEeCCCc-EEEEEC-CC-EEEEcC
Q psy8782 328 DGAPARDAKLAYPKGVAVSADNI-LYFADG-TN-IRMVDR 364 (482)
Q Consensus 328 dg~~a~~a~l~~P~giavd~~G~-lyvaD~-~n-Ir~i~~ 364 (482)
...-..|++++++++|. +|+++. .+ |++++.
T Consensus 171 ------~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~ 204 (330)
T PRK11028 171 ------TVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQL 204 (330)
T ss_pred ------cCCCCCCceEEECCCCCEEEEEecCCCEEEEEEE
Confidence 00013589999999976 888886 33 766653
No 17
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.00 E-value=2e-07 Score=94.65 Aligned_cols=221 Identities=23% Similarity=0.264 Sum_probs=133.4
Q ss_pred CCCceEEEEcCCCc-EEEEeC--CcE--EEEcCCCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEc
Q psy8782 119 LLAPVALATAPDGS-LFVGDF--NLI--RRIMTDGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKN 193 (482)
Q Consensus 119 l~~P~glavd~~G~-lyvaD~--~~I--rki~~~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d 193 (482)
=..|..|+++++|. ||++.+ +.| ..++.+|.+......-. +.+. ++....+...+|..+.++++++.+|++|
T Consensus 86 g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~--~~g~-g~~~~rq~~~h~H~v~~~pdg~~v~v~d 162 (345)
T PF10282_consen 86 GSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVR--HEGS-GPNPDRQEGPHPHQVVFSPDGRFVYVPD 162 (345)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEE--SEEE-ESSTTTTSSTCEEEEEE-TTSSEEEEEE
T ss_pred CCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecc--cCCC-CCcccccccccceeEEECCCCCEEEEEe
Confidence 35799999999886 899987 555 55667787765432110 0000 0111112245788999999999999998
Q ss_pred C-CCeEEEEcC---CCccccCCCcCCCCCCCceeecCCccEEEEcCCC-CEEEEEC--CcEEEEc---CCCeEEEEEeec
Q psy8782 194 K-PRIIKTTLG---DGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDG-SLFVGDF--NLIRRIM---TDGTVRTVVRLN 263 (482)
Q Consensus 194 ~-~~~i~~~~g---~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G-~lyv~D~--~~I~~i~---~~G~v~~~~g~~ 263 (482)
. ...|..+.- .++...... .....-..|..|+++|+| .+||+.. +.|..++ .+|.+..+....
T Consensus 163 lG~D~v~~~~~~~~~~~l~~~~~-------~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~ 235 (345)
T PF10282_consen 163 LGADRVYVYDIDDDTGKLTPVDS-------IKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTIS 235 (345)
T ss_dssp TTTTEEEEEEE-TTS-TEEEEEE-------EECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEE
T ss_pred cCCCEEEEEEEeCCCceEEEeec-------cccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEee
Confidence 5 334443321 221111000 001122469999999998 6899987 6666665 456554433221
Q ss_pred -----cCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccC
Q psy8782 264 -----VTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLA 338 (482)
Q Consensus 264 -----~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~ 338 (482)
...-..|.+|+++|+...|||+..+.+.|..++... .+|.++.+.-. ...-.
T Consensus 236 ~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~----~~g~l~~~~~~-------------------~~~G~ 292 (345)
T PF10282_consen 236 TLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDP----ATGTLTLVQTV-------------------PTGGK 292 (345)
T ss_dssp SCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECT----TTTTEEEEEEE-------------------EESSS
T ss_pred eccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEec----CCCceEEEEEE-------------------eCCCC
Confidence 112237999999996668999999999998888532 45676654321 01124
Q ss_pred CcceEEEeCCCc-EEEEECCC----EEEEcC-CCcEEEEE
Q psy8782 339 YPKGVAVSADNI-LYFADGTN----IRMVDR-DGIVTTVI 372 (482)
Q Consensus 339 ~P~giavd~~G~-lyvaD~~n----Ir~i~~-~G~i~ti~ 372 (482)
.|++|+++++|+ |||+.... +.++|+ +|.+..+.
T Consensus 293 ~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 293 FPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp SEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred CccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEec
Confidence 699999999987 88888654 445553 67765543
No 18
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.97 E-value=4.6e-07 Score=93.27 Aligned_cols=231 Identities=19% Similarity=0.270 Sum_probs=148.8
Q ss_pred CCceEEEEcCCC-cEEEEeC--CcEEEEcCCCeEEEE-EeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCC
Q psy8782 120 LAPVALATAPDG-SLFVGDF--NLIRRIMTDGTVRTV-VRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKP 195 (482)
Q Consensus 120 ~~P~glavd~~G-~lyvaD~--~~Irki~~~G~v~ti-~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~ 195 (482)
..|.++++.++| .+|++.. +.+..++..-+..+. ...+ ...|.++++.+.+.++|+.+.+
T Consensus 31 ~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g----------------~~~p~~i~v~~~~~~vyv~~~~ 94 (381)
T COG3391 31 RGPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVG----------------GVYPAGVAVNPAGNKVYVTTGD 94 (381)
T ss_pred CCCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCC----------------CccccceeeCCCCCeEEEecCC
Confidence 389999999999 7999997 556666554222221 1111 1569999999999999999854
Q ss_pred -CeEEEEcCCC-ccccCCCcCCCCCCCceeecCCccEEEEcCCC-CEEEEEC----CcEEEEcCCC-eEEEEEeeccCCC
Q psy8782 196 -RIIKTTLGDG-HQRPLDCKDCNGEAGPKQRLLAPVALATAPDG-SLFVGDF----NLIRRIMTDG-TVRTVVRLNVTRV 267 (482)
Q Consensus 196 -~~i~~~~g~G-~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G-~lyv~D~----~~I~~i~~~G-~v~~~~g~~~~~~ 267 (482)
..+..+...- +... ....-..|.++++++++ .+||++. +.|.++++.. ++....-.+
T Consensus 95 ~~~v~vid~~~~~~~~-----------~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG---- 159 (381)
T COG3391 95 SNTVSVIDTATNTVLG-----------SIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVG---- 159 (381)
T ss_pred CCeEEEEcCcccceee-----------EeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecC----
Confidence 5555554211 1110 11111289999999988 9999999 6899998764 443332111
Q ss_pred CceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeC
Q psy8782 268 AYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSA 347 (482)
Q Consensus 268 ~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~ 347 (482)
..|.+++++|....+|+++...++|..++. ++..... ++.. .....+..|.++++++
T Consensus 160 ~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~-------~~~~v~~-~~~~---------------~~~~~~~~P~~i~v~~ 216 (381)
T COG3391 160 NTPTGVAVDPDGNKVYVTNSDDNTVSVIDT-------SGNSVVR-GSVG---------------SLVGVGTGPAGIAVDP 216 (381)
T ss_pred CCcceEEECCCCCeEEEEecCCCeEEEEeC-------CCcceec-cccc---------------cccccCCCCceEEECC
Confidence 268999999955569999999999999983 3332221 2211 0123467899999999
Q ss_pred CCc-EEEEECCC----EEEEcCC-CcEEEE--EcCCCCCCCCCcCCCCc-eEEecccc-ceeEEeecC
Q psy8782 348 DNI-LYFADGTN----IRMVDRD-GIVTTV--IGNHMHKSHWKPIPCEG-TLNIEEVS-ETMRDIRHT 405 (482)
Q Consensus 348 ~G~-lyvaD~~n----Ir~i~~~-G~i~ti--~G~~~~~~~~~~~~~dg-~l~v~~~~-~~~~~l~~p 405 (482)
+|. +||++..+ +.+++.. +.+... ..... .+....+.++| .+|+.... ..+..++..
T Consensus 217 ~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~ 283 (381)
T COG3391 217 DGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGA 283 (381)
T ss_pred CCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCC
Confidence 998 99998763 8888864 443322 11121 34456667777 56665433 344444443
No 19
>KOG1214|consensus
Probab=98.95 E-value=1e-08 Score=108.18 Aligned_cols=182 Identities=24% Similarity=0.340 Sum_probs=135.7
Q ss_pred CceEEEEcC-CCcEEEEeC--CcEEEEcCCCe-EEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCC-
Q psy8782 121 APVALATAP-DGSLFVGDF--NLIRRIMTDGT-VRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKP- 195 (482)
Q Consensus 121 ~P~glavd~-~G~lyvaD~--~~Irki~~~G~-v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~- 195 (482)
-|.||++|= +-.||.+|. +.|++-..+|. -++++..+ +.+|.||+++--+.++|.+|+.
T Consensus 1026 IiVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n~~----------------L~SPEGiAVDh~~Rn~ywtDS~l 1089 (1289)
T KOG1214|consen 1026 IIVGIDFDCRERMVYWTDVAGRSISRASLEGAEPETIVNSG----------------LISPEGIAVDHIRRNMYWTDSVL 1089 (1289)
T ss_pred eeeeeecccccceEEEeecCCCccccccccCCCCceeeccc----------------CCCccceeeeeccceeeeecccc
Confidence 366777774 667999998 88999887764 55666433 5689999999999999999973
Q ss_pred CeEEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcC-CCCEEEEECC----cEEEEcCCCeEEEEEeeccCCCCce
Q psy8782 196 RIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAP-DGSLFVGDFN----LIRRIMTDGTVRTVVRLNVTRVAYR 270 (482)
Q Consensus 196 ~~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~-~G~lyv~D~~----~I~~i~~~G~v~~~~g~~~~~~~~p 270 (482)
..|.+-.=+|+.+.. .....|-.|.+|++|+ .|+||.+|+| .|-+.+.||+-.+++-. ..+.-|
T Consensus 1090 D~IevA~LdG~~rkv---------Lf~tdLVNPR~iv~D~~rgnLYwtDWnRenPkIets~mDG~NrRilin--~DigLP 1158 (1289)
T KOG1214|consen 1090 DKIEVALLDGSERKV---------LFYTDLVNPRAIVVDPIRGNLYWTDWNRENPKIETSSMDGENRRILIN--TDIGLP 1158 (1289)
T ss_pred chhheeecCCceeeE---------EEeecccCcceEEeecccCceeeccccccCCcceeeccCCccceEEee--cccCCC
Confidence 334333333333210 0235678999999999 6799999994 58889999987776643 456779
Q ss_pred eeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCc
Q psy8782 271 YHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNI 350 (482)
Q Consensus 271 ~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~ 350 (482)
+||.++|....|--+|.+++|.-.+. ++|.-. ......|.+|-+|+-+.+.
T Consensus 1159 NGLtfdpfs~~LCWvDAGt~rleC~~-------p~g~gR---------------------R~i~~~LqYPF~itsy~~~- 1209 (1289)
T KOG1214|consen 1159 NGLTFDPFSKLLCWVDAGTKRLECTL-------PDGTGR---------------------RVIQNNLQYPFSITSYADH- 1209 (1289)
T ss_pred CCceeCcccceeeEEecCCcceeEec-------CCCCcc---------------------hhhhhcccCceeeeecccc-
Confidence 99999998889999999999998887 454322 1223348999999998665
Q ss_pred EEEEECCC
Q psy8782 351 LYFADGTN 358 (482)
Q Consensus 351 lyvaD~~n 358 (482)
+|.+|+..
T Consensus 1210 fY~TDWk~ 1217 (1289)
T KOG1214|consen 1210 FYHTDWKR 1217 (1289)
T ss_pred ceeecccc
Confidence 99999976
No 20
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=98.93 E-value=3.8e-08 Score=100.81 Aligned_cols=151 Identities=19% Similarity=0.258 Sum_probs=103.6
Q ss_pred ecCCccEEEEcCCCCEEEEEC--------------CcEEEEcC---CCeEE--EEEeeccCCCCceeeEEEeCCCCeEEE
Q psy8782 224 RLLAPVALATAPDGSLFVGDF--------------NLIRRIMT---DGTVR--TVVRLNVTRVAYRYHIAYSPLDGTLYI 284 (482)
Q Consensus 224 ~l~~P~giavd~~G~lyv~D~--------------~~I~~i~~---~G~v~--~~~g~~~~~~~~p~giavd~~~g~lyV 284 (482)
.+..|.+|++|++|+|||++. .+|+++.. +|+.. +++ ...+..|.||++.+ +| |||
T Consensus 12 ~~~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vf---a~~l~~p~Gi~~~~-~G-lyV 86 (367)
T TIGR02604 12 LLRNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVF---AEELSMVTGLAVAV-GG-VYV 86 (367)
T ss_pred ccCCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEe---ecCCCCccceeEec-CC-EEE
Confidence 478999999999999999983 38888863 56542 333 34577899999998 77 999
Q ss_pred EeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEECC-------
Q psy8782 285 SDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADGT------- 357 (482)
Q Consensus 285 aD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~~------- 357 (482)
++. .+|+++.....--..++..++++-. +...+ ......|++++++++|.|||++..
T Consensus 87 ~~~--~~i~~~~d~~gdg~ad~~~~~l~~~----------~~~~~----~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~ 150 (367)
T TIGR02604 87 ATP--PDILFLRDKDGDDKADGEREVLLSG----------FGGQI----NNHHHSLNSLAWGPDGWLYFNHGNTLASKVT 150 (367)
T ss_pred eCC--CeEEEEeCCCCCCCCCCccEEEEEc----------cCCCC----CcccccccCceECCCCCEEEecccCCCceec
Confidence 974 5799885321100123344455421 00000 001356899999999999998872
Q ss_pred --------------CEEEEcCCCcEEEEEcCCCCCCCCCcCCCCceEEeccc
Q psy8782 358 --------------NIRMVDRDGIVTTVIGNHMHKSHWKPIPCEGTLNIEEV 395 (482)
Q Consensus 358 --------------nIr~i~~~G~i~ti~G~~~~~~~~~~~~~dg~l~v~~~ 395 (482)
.|.+++++|....++..+...+.+..++.+|.+|+.+.
T Consensus 151 ~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 151 RPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred cCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence 27888998765556667777677788888898888654
No 21
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.89 E-value=6.2e-07 Score=86.10 Aligned_cols=198 Identities=23% Similarity=0.233 Sum_probs=106.4
Q ss_pred CCCceEEEEcCC-CcEEEEeC--CcEEEEcCCCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEc-C
Q psy8782 119 LLAPVALATAPD-GSLFVGDF--NLIRRIMTDGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKN-K 194 (482)
Q Consensus 119 l~~P~glavd~~-G~lyvaD~--~~Irki~~~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d-~ 194 (482)
...++||+.+|+ +.||..-. ..|..++.+|++........ +.+|.||+|..++ .+.+++ .
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g---------------~~D~EgI~y~g~~-~~vl~~Er 84 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDG---------------FGDYEGITYLGNG-RYVLSEER 84 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS----------------SSEEEEEE-STT-EEEEEETT
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCC---------------CCCceeEEEECCC-EEEEEEcC
Confidence 446899999996 56776544 78999999998776443321 2468999998665 444444 4
Q ss_pred CCeEEEEcC--CCccccCCCcCCCCCCCceeecC-------CccEEEEcCC-CCEEEEEC---CcEEEEcC--CCeEEEE
Q psy8782 195 PRIIKTTLG--DGHQRPLDCKDCNGEAGPKQRLL-------APVALATAPD-GSLFVGDF---NLIRRIMT--DGTVRTV 259 (482)
Q Consensus 195 ~~~i~~~~g--~G~~~~~~~~~~~g~~~~~~~l~-------~P~giavd~~-G~lyv~D~---~~I~~i~~--~G~v~~~ 259 (482)
.+.+..+.- .+...... ....-.|. .-.|||.|+. +.||++-- .+|+.+.. .+....+
T Consensus 85 ~~~L~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~ 157 (248)
T PF06977_consen 85 DQRLYIFTIDDDTTSLDRA-------DVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFV 157 (248)
T ss_dssp TTEEEEEEE----TT--EE-------EEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EE
T ss_pred CCcEEEEEEeccccccchh-------hceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceee
Confidence 554443321 11110000 00001121 2479999995 57887765 35666653 2222222
Q ss_pred Eee-c----cCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccc
Q psy8782 260 VRL-N----VTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARD 334 (482)
Q Consensus 260 ~g~-~----~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~ 334 (482)
... . ...+..|++++++|..++|||....+++|..++ .+|.+.-..--. .|.....
T Consensus 158 ~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-------~~G~~~~~~~L~------------~g~~gl~ 218 (248)
T PF06977_consen 158 SDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-------RQGRVVSSLSLD------------RGFHGLS 218 (248)
T ss_dssp EE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--------TT--EEEEEE-S------------TTGGG-S
T ss_pred ccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-------CCCCEEEEEEeC------------CcccCcc
Confidence 111 1 224567999999999999999999999999999 577754332110 1112234
Q ss_pred cccCCcceEEEeCCCcEEEEECCC
Q psy8782 335 AKLAYPKGVAVSADNILYFADGTN 358 (482)
Q Consensus 335 a~l~~P~giavd~~G~lyvaD~~n 358 (482)
..+.+|.|||+|++|+|||+.--|
T Consensus 219 ~~~~QpEGIa~d~~G~LYIvsEpN 242 (248)
T PF06977_consen 219 KDIPQPEGIAFDPDGNLYIVSEPN 242 (248)
T ss_dssp S---SEEEEEE-TT--EEEEETTT
T ss_pred cccCCccEEEECCCCCEEEEcCCc
Confidence 568899999999999999988766
No 22
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.80 E-value=6e-07 Score=89.09 Aligned_cols=195 Identities=14% Similarity=0.124 Sum_probs=132.4
Q ss_pred CccEEEEcCC-CCEEEEEC--CcEEEEcCC-CeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccC
Q psy8782 227 APVALATAPD-GSLFVGDF--NLIRRIMTD-GTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFS 302 (482)
Q Consensus 227 ~P~giavd~~-G~lyv~D~--~~I~~i~~~-G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~ 302 (482)
...|...+++ +.||++|. ++|+++++. |+...+. . .-..+.++.++. .+.|.+++.+-.++.. +
T Consensus 26 ~gEgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~-~---p~~~~~~~~~d~-~g~Lv~~~~g~~~~~~-~------ 93 (307)
T COG3386 26 LGEGPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFP-S---PGGFSSGALIDA-GGRLIACEHGVRLLDP-D------ 93 (307)
T ss_pred cccCccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEE-C---CCCcccceeecC-CCeEEEEccccEEEec-c------
Confidence 3456555665 46999999 899999986 6554442 1 122367888887 8899999866444333 3
Q ss_pred CCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEECC-----C--------EEEEcCCCcEE
Q psy8782 303 APDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADGT-----N--------IRMVDRDGIVT 369 (482)
Q Consensus 303 ~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~~-----n--------Ir~i~~~G~i~ 369 (482)
..+.++.++-. .+ ..+++.|+.+.++++|.+||.|.. . +.++++.|.+.
T Consensus 94 -~~~~~t~~~~~------------~~-----~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~ 155 (307)
T COG3386 94 -TGGKITLLAEP------------ED-----GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVV 155 (307)
T ss_pred -CCceeEEeccc------------cC-----CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEE
Confidence 23333554421 12 245799999999999999999988 1 88999999988
Q ss_pred EEEcCCCCCCCCCcCCCCc-eEEecccc-ceeEEeecC-cceEEecccCCCceEEEeeceeeeeeeeeeecccceeeeee
Q psy8782 370 TVIGNHMHKSHWKPIPCEG-TLNIEEVS-ETMRDIRHT-TGWACYGTGDNDHMTLIHCYGVMQDVVTSVFNNSHFLDVHF 446 (482)
Q Consensus 370 ti~G~~~~~~~~~~~~~dg-~l~v~~~~-~~~~~l~~p-~giav~~~g~n~~~~~~~~~g~~~~~~~~~~n~~~~~~~~i 446 (482)
.++-.....+|+.++++|+ .||+++.. +++.++.+. ..+.+. +.+...+.. ..--+|-++
T Consensus 156 ~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~----~~~~~~~~~-------------~~~G~PDG~ 218 (307)
T COG3386 156 RLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIG----GRRGFVDFD-------------EEPGLPDGM 218 (307)
T ss_pred EeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccC----CcceEEEcc-------------CCCCCCCce
Confidence 8887767778899999999 89998884 588888775 333322 222111111 111245689
Q ss_pred EEcCCCcEEEEeCCC-CeeEEee
Q psy8782 447 SHQDQDLFYFVKELP-QKIRDDL 468 (482)
Q Consensus 447 ~~~~~g~~yi~d~~n-~rIrk~~ 468 (482)
++|.+|.+|++-.++ .+|..+.
T Consensus 219 ~vDadG~lw~~a~~~g~~v~~~~ 241 (307)
T COG3386 219 AVDADGNLWVAAVWGGGRVVRFN 241 (307)
T ss_pred EEeCCCCEEEecccCCceEEEEC
Confidence 999999999665554 3665443
No 23
>KOG1214|consensus
Probab=98.70 E-value=1.9e-07 Score=98.73 Aligned_cols=180 Identities=17% Similarity=0.177 Sum_probs=129.9
Q ss_pred ccEEEEcC-CCCEEEEEC--CcEEEEcCCCe-EEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCC
Q psy8782 228 PVALATAP-DGSLFVGDF--NLIRRIMTDGT-VRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSA 303 (482)
Q Consensus 228 P~giavd~-~G~lyv~D~--~~I~~i~~~G~-v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~ 303 (482)
|.||++|- +-.||.+|. +.|++-..+|. -.+++ ...+..|.|||||-..-++|.+|+.+.+|-.-.
T Consensus 1027 iVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~---n~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~------- 1096 (1289)
T KOG1214|consen 1027 IVGIDFDCRERMVYWTDVAGRSISRASLEGAEPETIV---NSGLISPEGIAVDHIRRNMYWTDSVLDKIEVAL------- 1096 (1289)
T ss_pred eeeeecccccceEEEeecCCCccccccccCCCCceee---cccCCCccceeeeeccceeeeeccccchhheee-------
Confidence 66888886 568999998 78999987774 45555 356889999999987789999999999987776
Q ss_pred CCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeC-CCcEEEEECCC----EEEEcCCCcEEEEEcCCCCC
Q psy8782 304 PDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSA-DNILYFADGTN----IRMVDRDGIVTTVIGNHMHK 378 (482)
Q Consensus 304 ~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~-~G~lyvaD~~n----Ir~i~~~G~i~ti~G~~~~~ 378 (482)
.+|+...+.= ...|-+|++|++|+ .|+||.+|++. |-..+.||+-..|+=+.
T Consensus 1097 LdG~~rkvLf--------------------~tdLVNPR~iv~D~~rgnLYwtDWnRenPkIets~mDG~NrRilin~--- 1153 (1289)
T KOG1214|consen 1097 LDGSERKVLF--------------------YTDLVNPRAIVVDPIRGNLYWTDWNRENPKIETSSMDGENRRILINT--- 1153 (1289)
T ss_pred cCCceeeEEE--------------------eecccCcceEEeecccCceeeccccccCCcceeeccCCccceEEeec---
Confidence 4666444331 12388999999998 57999999976 77777777654443211
Q ss_pred CCCCcCCCCceEEeccccceeEEeecCcceEEeccc--------CCCceEEEeeceeeeeeeeeeecccceeeeeeEEcC
Q psy8782 379 SHWKPIPCEGTLNIEEVSETMRDIRHTTGWACYGTG--------DNDHMTLIHCYGVMQDVVTSVFNNSHFLDVHFSHQD 450 (482)
Q Consensus 379 ~~~~~~~~dg~l~v~~~~~~~~~l~~p~giav~~~g--------~n~~~~~~~~~g~~~~~~~~~~n~~~~~~~~i~~~~ 450 (482)
+ +.+|.||.+++.. +++|+.-+.+++...-++ -+.+-||.+|..+.
T Consensus 1154 ---------------D-------igLPNGLtfdpfs~~LCWvDAGt~rleC~~p~g~gRR~i----~~~LqYPF~itsy~ 1207 (1289)
T KOG1214|consen 1154 ---------------D-------IGLPNGLTFDPFSKLLCWVDAGTKRLECTLPDGTGRRVI----QNNLQYPFSITSYA 1207 (1289)
T ss_pred ---------------c-------cCCCCCceeCcccceeeEEecCCcceeEecCCCCcchhh----hhcccCceeeeecc
Confidence 1 3447777776543 778888777766543322 23466887777776
Q ss_pred CCcEEEEeCCCCeeEEe
Q psy8782 451 QDLFYFVKELPQKIRDD 467 (482)
Q Consensus 451 ~g~~yi~d~~n~rIrk~ 467 (482)
+. +|..|..-++|-.+
T Consensus 1208 ~~-fY~TDWk~n~vvsv 1223 (1289)
T KOG1214|consen 1208 DH-FYHTDWKRNGVVSV 1223 (1289)
T ss_pred cc-ceeeccccCceEEe
Confidence 64 99999998888653
No 24
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.61 E-value=0.00011 Score=72.21 Aligned_cols=245 Identities=21% Similarity=0.211 Sum_probs=147.8
Q ss_pred cccCCCceEEEEcCCC-cEEEEeC----CcE--EEEcCC-CeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCC
Q psy8782 116 KQRLLAPVALATAPDG-SLFVGDF----NLI--RRIMTD-GTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGS 187 (482)
Q Consensus 116 ~~~l~~P~glavd~~G-~lyvaD~----~~I--rki~~~-G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~ 187 (482)
-+.+..|+-|++++++ .||+... .+| .+|+++ |.++-+-.....+ ..|.-+.++.++.
T Consensus 36 v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g--------------~~p~yvsvd~~g~ 101 (346)
T COG2706 36 VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPG--------------SPPCYVSVDEDGR 101 (346)
T ss_pred ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCC--------------CCCeEEEECCCCC
Confidence 4678899999999998 5898865 444 466765 7776544332221 3467888999999
Q ss_pred eEEEEcCC-CeEEEE--cCCCccccC-CCcCCCCCCCcee-ecCCccEEEEcCCC-CEEEEEC--CcEEEEc-CCCeEEE
Q psy8782 188 NIYLKNKP-RIIKTT--LGDGHQRPL-DCKDCNGEAGPKQ-RLLAPVALATAPDG-SLFVGDF--NLIRRIM-TDGTVRT 258 (482)
Q Consensus 188 ~lyi~d~~-~~i~~~--~g~G~~~~~-~~~~~~g~~~~~~-~l~~P~giavd~~G-~lyv~D~--~~I~~i~-~~G~v~~ 258 (482)
.||+++.+ +.|... ...|..... +...-.+....+. .-..++..-++|+| .|++.|- .+|..++ .+|++..
T Consensus 102 ~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~ 181 (346)
T COG2706 102 FVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTP 181 (346)
T ss_pred EEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccc
Confidence 99999864 344332 233544322 1111111111122 22347788899999 6778887 6777776 3776655
Q ss_pred EEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccC
Q psy8782 259 VVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLA 338 (482)
Q Consensus 259 ~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~ 338 (482)
.-......-..|..|+++|.....|+....+++|..+.... ..|.++.+-- ..++|. .+.|+ +
T Consensus 182 ~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~----~~g~~~~lQ~--i~tlP~--dF~g~---------~ 244 (346)
T COG2706 182 ADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNP----AVGKFEELQT--IDTLPE--DFTGT---------N 244 (346)
T ss_pred ccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcC----CCceEEEeee--eccCcc--ccCCC---------C
Confidence 43322333457999999996668999999999998887532 2355554421 112221 12222 2
Q ss_pred CcceEEEeCCCc-EEEEECCC----EEEEcCCCc-EEEEEcCC--CCCCCCCcCCCCceEE
Q psy8782 339 YPKGVAVSADNI-LYFADGTN----IRMVDRDGI-VTTVIGNH--MHKSHWKPIPCEGTLN 391 (482)
Q Consensus 339 ~P~giavd~~G~-lyvaD~~n----Ir~i~~~G~-i~ti~G~~--~~~~~~~~~~~dg~l~ 391 (482)
+-..|.++++|. ||+++.+. +.+++++|. +.++.-.. +..|....++..|.+.
T Consensus 245 ~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~L 305 (346)
T COG2706 245 WAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFL 305 (346)
T ss_pred ceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEE
Confidence 334688999986 99999887 667788754 44443222 2223333445666433
No 25
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.60 E-value=0.00012 Score=71.88 Aligned_cols=217 Identities=19% Similarity=0.255 Sum_probs=128.1
Q ss_pred CCceEEEEcCCCc-EEEEeC--CcE--EEEcCCCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcC
Q psy8782 120 LAPVALATAPDGS-LFVGDF--NLI--RRIMTDGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNK 194 (482)
Q Consensus 120 ~~P~glavd~~G~-lyvaD~--~~I--rki~~~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~ 194 (482)
..|.-|++|++|. ||+|.+ +.| .++..+|.+....+.-.-... ++- +.+-..++.-..+++++..|++.|-
T Consensus 89 ~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~---~p~-~rQ~~~h~H~a~~tP~~~~l~v~DL 164 (346)
T COG2706 89 SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGS---GPH-ERQESPHVHSANFTPDGRYLVVPDL 164 (346)
T ss_pred CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCC---CCC-ccccCCccceeeeCCCCCEEEEeec
Confidence 4569999999996 677777 444 455567876554332211100 011 1122233556667788888888874
Q ss_pred --CCeEEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcCCC-CEEEEEC--CcEEE--EcCC-CeEEEEEeec--c
Q psy8782 195 --PRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDG-SLFVGDF--NLIRR--IMTD-GTVRTVVRLN--V 264 (482)
Q Consensus 195 --~~~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G-~lyv~D~--~~I~~--i~~~-G~v~~~~g~~--~ 264 (482)
+++.......|...+..... ...=..|.-|++.|+| -.|+... +.|-. +++. |++..+--.. .
T Consensus 165 G~Dri~~y~~~dg~L~~~~~~~-------v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP 237 (346)
T COG2706 165 GTDRIFLYDLDDGKLTPADPAE-------VKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLP 237 (346)
T ss_pred CCceEEEEEcccCccccccccc-------cCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCc
Confidence 44444444466554432111 1122369999999999 5676666 55544 4553 5555443221 1
Q ss_pred ---CCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCC-CcEEEEecCCcccCCCCCCccCCCccccccccCCc
Q psy8782 265 ---TRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPD-YNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYP 340 (482)
Q Consensus 265 ---~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~-g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P 340 (482)
.+..+-..|.++++...||+++.+.+.|..+... ++ |.++++.-.. ..-..|
T Consensus 238 ~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~-----~~~g~L~~~~~~~-------------------teg~~P 293 (346)
T COG2706 238 EDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVD-----PDGGKLELVGITP-------------------TEGQFP 293 (346)
T ss_pred cccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEc-----CCCCEEEEEEEec-------------------cCCcCC
Confidence 2334556788999555899999999888777643 34 4444443221 123569
Q ss_pred ceEEEeCCCcEEEEE---CCCEE--EEcC-CCcEEEE
Q psy8782 341 KGVAVSADNILYFAD---GTNIR--MVDR-DGIVTTV 371 (482)
Q Consensus 341 ~giavd~~G~lyvaD---~~nIr--~i~~-~G~i~ti 371 (482)
++..+++.|++.++- +.+|. .+|+ +|.++.+
T Consensus 294 R~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~ 330 (346)
T COG2706 294 RDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLL 330 (346)
T ss_pred ccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEec
Confidence 999999999866663 34444 4554 6776554
No 26
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=98.46 E-value=8.2e-06 Score=84.70 Aligned_cols=32 Identities=31% Similarity=0.384 Sum_probs=28.2
Q ss_pred ccCCCceEEEEcCCCcEEEEeC--CcEEEEcCCC
Q psy8782 117 QRLLAPVALATAPDGSLFVGDF--NLIRRIMTDG 148 (482)
Q Consensus 117 ~~l~~P~glavd~~G~lyvaD~--~~Irki~~~G 148 (482)
..|..|++|++.|||+|||++. .+|+++++++
T Consensus 27 ~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~ 60 (454)
T TIGR03606 27 SGLNKPWALLWGPDNQLWVTERATGKILRVNPET 60 (454)
T ss_pred CCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCC
Confidence 4688999999999999999996 8999997654
No 27
>KOG1520|consensus
Probab=98.44 E-value=6e-06 Score=82.12 Aligned_cols=114 Identities=20% Similarity=0.332 Sum_probs=81.4
Q ss_pred ecCCccEEEEcCCC-CEEEEEC-CcEEEEcCCCeEEEEEeec--cCCCCceeeEEEeCCCCeEEEEeCCC----------
Q psy8782 224 RLLAPVALATAPDG-SLFVGDF-NLIRRIMTDGTVRTVVRLN--VTRVAYRYHIAYSPLDGTLYISDPES---------- 289 (482)
Q Consensus 224 ~l~~P~giavd~~G-~lyv~D~-~~I~~i~~~G~v~~~~g~~--~~~~~~p~giavd~~~g~lyVaD~~n---------- 289 (482)
.--+|.||+++..| +|||||. --+.+++++|...+..-.. ...+...+++.|++ +|.+|++|+..
T Consensus 113 ~CGRPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~-~g~vyFTDSSsk~~~rd~~~a 191 (376)
T KOG1520|consen 113 LCGRPLGIRFDKKGGDLYVADAYLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDP-EGVVYFTDSSSKYDRRDFVFA 191 (376)
T ss_pred ccCCcceEEeccCCCeEEEEecceeeEEECCCCCcceeccccccCeeeeecCceeEcC-CCeEEEeccccccchhheEEe
Confidence 34589999999987 9999999 6899999999875544322 23466788999999 99999999754
Q ss_pred -------CEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCc-EEEEECCC--E
Q psy8782 290 -------HQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNI-LYFADGTN--I 359 (482)
Q Consensus 290 -------~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~-lyvaD~~n--I 359 (482)
+|+.|+|. ..+.. .-.-..|..|+|+++.+++. +.+|++.. |
T Consensus 192 ~l~g~~~GRl~~YD~-------~tK~~---------------------~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri 243 (376)
T KOG1520|consen 192 ALEGDPTGRLFRYDP-------STKVT---------------------KVLLDGLYFPNGLALSPDGSFVLVAETTTARI 243 (376)
T ss_pred eecCCCccceEEecC-------cccch---------------------hhhhhcccccccccCCCCCCEEEEEeecccee
Confidence 23333331 11111 11233489999999999986 66788876 7
Q ss_pred EEEcCCC
Q psy8782 360 RMVDRDG 366 (482)
Q Consensus 360 r~i~~~G 366 (482)
+|+--.|
T Consensus 244 ~rywi~g 250 (376)
T KOG1520|consen 244 KRYWIKG 250 (376)
T ss_pred eeeEecC
Confidence 7776443
No 28
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=98.36 E-value=2e-06 Score=86.84 Aligned_cols=126 Identities=26% Similarity=0.333 Sum_probs=80.5
Q ss_pred cCCccEEEEcCCCCEEEEEC-CcEEEEcCCCeE-EEEEeec---cCCCCceeeEEEeC---CCCeEEEEeCCC-------
Q psy8782 225 LLAPVALATAPDGSLFVGDF-NLIRRIMTDGTV-RTVVRLN---VTRVAYRYHIAYSP---LDGTLYISDPES------- 289 (482)
Q Consensus 225 l~~P~giavd~~G~lyv~D~-~~I~~i~~~G~v-~~~~g~~---~~~~~~p~giavd~---~~g~lyVaD~~n------- 289 (482)
|+.|++|++.|||.|||++. .+|++++.+|.. ..+.... ........+||++| .++.|||+-+..
T Consensus 1 L~~P~~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 1 LNNPRSMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp ESSEEEEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CCCceEEEEeCCCcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 57899999999999999999 899999999987 4444332 23345678999998 248999998743
Q ss_pred -CEEEEEecCCccCCCCCcEEEEe-cCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEECC----------
Q psy8782 290 -HQILRVKNAMDFSAPDYNVEPAV-GSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADGT---------- 357 (482)
Q Consensus 290 -~~I~~~~~~~~~~~~~g~~~~va-G~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~~---------- 357 (482)
.+|.|+....... .-...++++ +.. ........-.+|+++++|.|||+=..
T Consensus 81 ~~~v~r~~~~~~~~-~~~~~~~l~~~~p----------------~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~ 143 (331)
T PF07995_consen 81 DNRVVRFTLSDGDG-DLSSEEVLVTGLP----------------DTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDP 143 (331)
T ss_dssp EEEEEEEEEETTSC-EEEEEEEEEEEEE----------------S-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCST
T ss_pred ceeeEEEeccCCcc-ccccceEEEEEeC----------------CCCCCCCCCccccCCCCCcEEEEeCCCCCccccccc
Confidence 5788887532100 001122222 211 11112345567999999999998431
Q ss_pred -----CEEEEcCCCc
Q psy8782 358 -----NIRMVDRDGI 367 (482)
Q Consensus 358 -----nIr~i~~~G~ 367 (482)
.|.+++++|.
T Consensus 144 ~~~~G~ilri~~dG~ 158 (331)
T PF07995_consen 144 NSLRGKILRIDPDGS 158 (331)
T ss_dssp TSSTTEEEEEETTSS
T ss_pred ccccceEEEecccCc
Confidence 1777888776
No 29
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=98.34 E-value=1.2e-06 Score=54.44 Aligned_cols=28 Identities=25% Similarity=0.564 Sum_probs=26.0
Q ss_pred CCceeeEEEeCCCCeEEEEeCCCCEEEEE
Q psy8782 267 VAYRYHIAYSPLDGTLYISDPESHQILRV 295 (482)
Q Consensus 267 ~~~p~giavd~~~g~lyVaD~~n~~I~~~ 295 (482)
|..|.|||+++ +|+|||+|+++|||+++
T Consensus 1 f~~P~gvav~~-~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVDS-DGNIYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEET-TSEEEEEECCCTEEEEE
T ss_pred CcCCcEEEEeC-CCCEEEEECCCCEEEEC
Confidence 46899999997 99999999999999986
No 30
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.31 E-value=1.6e-05 Score=76.36 Aligned_cols=199 Identities=17% Similarity=0.197 Sum_probs=103.4
Q ss_pred CCCeEEecCCc-eEEEeeCCCeEEEEeccCccC-CCCCcCCCCCCcCcccCCCceEEEEcCCCcEEEEeC--CcEEEEcC
Q psy8782 71 HEGILQKGDGS-NIYLKNKPRIIKTTLGDGHQR-PLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF--NLIRRIMT 146 (482)
Q Consensus 71 ~~gil~~gdG~-~~~~~~~~~~i~tv~G~G~~~-~~~~~~~~G~~~~~~~l~~P~glavd~~G~lyvaD~--~~Irki~~ 146 (482)
.+|+-|..+.. .+.+.+.+..|..+.-.|... .++ . ..+.-|.||+.-.+|.+.+++. +++.++..
T Consensus 24 ~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~---l-------~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 24 LSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIP---L-------DGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-----------SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred ccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEe---C-------CCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 35555655433 334445556665555443321 010 1 1245799999998898888885 77777654
Q ss_pred --CCeEEEE-----EeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcC--CCeEEEEcC--CCccc-cCCCcC
Q psy8782 147 --DGTVRTV-----VRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNK--PRIIKTTLG--DGHQR-PLDCKD 214 (482)
Q Consensus 147 --~G~v~ti-----~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~--~~~i~~~~g--~G~~~-~~~~~~ 214 (482)
++..... ...+... .--..-.|++|++.++.+|++.. +..+..+.+ .+... ..+.
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~-----------~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~-- 160 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPN-----------KGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDD-- 160 (248)
T ss_dssp ----TT--EEEEEEEE---S--------------SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE---
T ss_pred eccccccchhhceEEeccccc-----------CCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccc--
Confidence 2221111 1111100 00012479999999999999853 334444443 11110 0000
Q ss_pred CCCCCCceeecCCccEEEEcC-CCCEEEEEC--CcEEEEcCCCeEEEEEeecc------CCCCceeeEEEeCCCCeEEEE
Q psy8782 215 CNGEAGPKQRLLAPVALATAP-DGSLFVGDF--NLIRRIMTDGTVRTVVRLNV------TRVAYRYHIAYSPLDGTLYIS 285 (482)
Q Consensus 215 ~~g~~~~~~~l~~P~giavd~-~G~lyv~D~--~~I~~i~~~G~v~~~~g~~~------~~~~~p~giavd~~~g~lyVa 285 (482)
.........+..|.+++++| .|+|||... .+|..++.+|++........ ..+.+|.|||+|+ +|+|||+
T Consensus 161 -~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~-~G~LYIv 238 (248)
T PF06977_consen 161 -QDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP-DGNLYIV 238 (248)
T ss_dssp -HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-T-T--EEEE
T ss_pred -cccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECC-CCCEEEE
Confidence 00000123455799999999 579999887 79999999999888776543 4567899999999 9999999
Q ss_pred eCCCCEEEEE
Q psy8782 286 DPESHQILRV 295 (482)
Q Consensus 286 D~~n~~I~~~ 295 (482)
.. -++.++|
T Consensus 239 sE-pNlfy~f 247 (248)
T PF06977_consen 239 SE-PNLFYRF 247 (248)
T ss_dssp ET-TTEEEEE
T ss_pred cC-CceEEEe
Confidence 86 4577766
No 31
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=98.31 E-value=2.6e-06 Score=68.25 Aligned_cols=66 Identities=20% Similarity=0.267 Sum_probs=50.5
Q ss_pred cEEEEcCC-CCEEEEEC-------------------CcEEEEcCCCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCC
Q psy8782 229 VALATAPD-GSLFVGDF-------------------NLIRRIMTDGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPE 288 (482)
Q Consensus 229 ~giavd~~-G~lyv~D~-------------------~~I~~i~~~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~ 288 (482)
.+++++++ |.|||+|+ +|+.+++|..+.++++ ...+.+|+||++++++..|+|+++.
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl---~~~L~fpNGVals~d~~~vlv~Et~ 77 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVL---LDGLYFPNGVALSPDESFVLVAETG 77 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEE---EEEESSEEEEEE-TTSSEEEEEEGG
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEe---hhCCCccCeEEEcCCCCEEEEEecc
Confidence 37899998 99999997 2599999887655544 3457899999999966689999999
Q ss_pred CCEEEEEec
Q psy8782 289 SHQILRVKN 297 (482)
Q Consensus 289 n~~I~~~~~ 297 (482)
.+||.|+-.
T Consensus 78 ~~Ri~rywl 86 (89)
T PF03088_consen 78 RYRILRYWL 86 (89)
T ss_dssp GTEEEEEES
T ss_pred CceEEEEEE
Confidence 999999974
No 32
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.28 E-value=0.0022 Score=62.50 Aligned_cols=198 Identities=18% Similarity=0.210 Sum_probs=114.5
Q ss_pred CceEEEEcCCCc-EEEEeC--CcEEEEcCC-CeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcC-C
Q psy8782 121 APVALATAPDGS-LFVGDF--NLIRRIMTD-GTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNK-P 195 (482)
Q Consensus 121 ~P~glavd~~G~-lyvaD~--~~Irki~~~-G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~-~ 195 (482)
.|.+++++++|. +|++.. +.|+.++.+ +++...+..+ ..|..+.++++++.+|++.. +
T Consensus 32 ~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-----------------~~~~~~~~~~~g~~l~~~~~~~ 94 (300)
T TIGR03866 32 RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSG-----------------PDPELFALHPNGKILYIANEDD 94 (300)
T ss_pred CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCC-----------------CCccEEEECCCCCEEEEEcCCC
Confidence 366789999987 677765 788888864 5544322111 12556777788878888753 4
Q ss_pred CeEEEEcCC-CccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC---CcEEEEcCC-CeEEEEEeeccCCCCce
Q psy8782 196 RIIKTTLGD-GHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF---NLIRRIMTD-GTVRTVVRLNVTRVAYR 270 (482)
Q Consensus 196 ~~i~~~~g~-G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~---~~I~~i~~~-G~v~~~~g~~~~~~~~p 270 (482)
+.+..+.-. +.... ....-..|.+++++|+|.++++.. ..+..++.. ++....... -..|
T Consensus 95 ~~l~~~d~~~~~~~~-----------~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~----~~~~ 159 (300)
T TIGR03866 95 NLVTVIDIETRKVLA-----------EIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV----DQRP 159 (300)
T ss_pred CeEEEEECCCCeEEe-----------EeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc----CCCc
Confidence 555554322 11110 000012478999999998776554 346666654 444332211 1357
Q ss_pred eeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcE-EEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCC
Q psy8782 271 YHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNV-EPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADN 349 (482)
Q Consensus 271 ~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~-~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G 349 (482)
..+++++++..||++....++|+.++. .++.. ..+... ..+. ...-..|.+++++++|
T Consensus 160 ~~~~~s~dg~~l~~~~~~~~~v~i~d~------~~~~~~~~~~~~------------~~~~---~~~~~~~~~i~~s~dg 218 (300)
T TIGR03866 160 RFAEFTADGKELWVSSEIGGTVSVIDV------ATRKVIKKITFE------------IPGV---HPEAVQPVGIKLTKDG 218 (300)
T ss_pred cEEEECCCCCEEEEEcCCCCEEEEEEc------Ccceeeeeeeec------------cccc---ccccCCccceEECCCC
Confidence 789999944567777666788999985 23332 211110 0000 0112358899999998
Q ss_pred c-EEEEECCC--EEEEcC-CCcEEEE
Q psy8782 350 I-LYFADGTN--IRMVDR-DGIVTTV 371 (482)
Q Consensus 350 ~-lyvaD~~n--Ir~i~~-~G~i~ti 371 (482)
. +|++...+ |+++|. ++++...
T Consensus 219 ~~~~~~~~~~~~i~v~d~~~~~~~~~ 244 (300)
T TIGR03866 219 KTAFVALGPANRVAVVDAKTYEVLDY 244 (300)
T ss_pred CEEEEEcCCCCeEEEEECCCCcEEEE
Confidence 7 47765433 888875 4555443
No 33
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=98.20 E-value=7.2e-05 Score=77.77 Aligned_cols=114 Identities=21% Similarity=0.239 Sum_probs=71.3
Q ss_pred eecCCccEEEEcCCCCEEEEEC--CcEEEEcCCC-eEEEEEeec----cCCCCceeeEEEeCC------CCeEEEEeC--
Q psy8782 223 QRLLAPVALATAPDGSLFVGDF--NLIRRIMTDG-TVRTVVRLN----VTRVAYRYHIAYSPL------DGTLYISDP-- 287 (482)
Q Consensus 223 ~~l~~P~giavd~~G~lyv~D~--~~I~~i~~~G-~v~~~~g~~----~~~~~~p~giavd~~------~g~lyVaD~-- 287 (482)
..|..|++|++.|||+|||++. .+|+++++++ ....+.+.. ......+.+||++|+ ++.|||+-+
T Consensus 27 ~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~ 106 (454)
T TIGR03606 27 SGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYK 106 (454)
T ss_pred CCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEecc
Confidence 4688999999999999999996 8999998754 333333221 113456889999974 347999852
Q ss_pred -------CCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEE
Q psy8782 288 -------ESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFA 354 (482)
Q Consensus 288 -------~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyva 354 (482)
...+|.|+..............++.+.... .-.+-..|+|++||.|||+
T Consensus 107 ~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~------------------~~H~GgrI~FgPDG~LYVs 162 (454)
T TIGR03606 107 NGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAG------------------NDHNGGRLVFGPDGKIYYT 162 (454)
T ss_pred CCCCCccCCcEEEEEEecCCCCccccceEEEecCCCC------------------CCcCCceEEECCCCcEEEE
Confidence 256898887532110011112223222110 0122345889999999995
No 34
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.19 E-value=0.0019 Score=62.84 Aligned_cols=192 Identities=16% Similarity=0.171 Sum_probs=112.7
Q ss_pred CceEEEEcCCCc-EEEEeC--CcEEEEcCC-CeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCCC
Q psy8782 121 APVALATAPDGS-LFVGDF--NLIRRIMTD-GTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKPR 196 (482)
Q Consensus 121 ~P~glavd~~G~-lyvaD~--~~Irki~~~-G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~~ 196 (482)
.|..++++++|+ +|++.. +.|+.++.. +........ ...|.++.+++++..++++....
T Consensus 74 ~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-----------------~~~~~~~~~~~dg~~l~~~~~~~ 136 (300)
T TIGR03866 74 DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-----------------GVEPEGMAVSPDGKIVVNTSETT 136 (300)
T ss_pred CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-----------------CCCcceEEECCCCCEEEEEecCC
Confidence 366789999987 677654 788888765 333222211 12367788888887776665432
Q ss_pred -eEEEEc-CCCccccCCCcCCCCCCCceeecCCccEEEEcCCCC-EEEEEC--CcEEEEcCC-CeEEEEEeec----cCC
Q psy8782 197 -IIKTTL-GDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGS-LFVGDF--NLIRRIMTD-GTVRTVVRLN----VTR 266 (482)
Q Consensus 197 -~i~~~~-g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~-lyv~D~--~~I~~i~~~-G~v~~~~g~~----~~~ 266 (482)
.+..+. .+++... ....-..|..++++++|. ||++.. +.|+.++.. ++....+... ...
T Consensus 137 ~~~~~~d~~~~~~~~-----------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~ 205 (300)
T TIGR03866 137 NMAHFIDTKTYEIVD-----------NVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPE 205 (300)
T ss_pred CeEEEEeCCCCeEEE-----------EEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccc
Confidence 222222 1222110 000113578899999986 445543 788888854 4443332211 111
Q ss_pred CCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEe
Q psy8782 267 VAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVS 346 (482)
Q Consensus 267 ~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd 346 (482)
-..|.+++++|++..+|++...+++|..++. .++.+...... -..|.+++++
T Consensus 206 ~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~------~~~~~~~~~~~----------------------~~~~~~~~~~ 257 (300)
T TIGR03866 206 AVQPVGIKLTKDGKTAFVALGPANRVAVVDA------KTYEVLDYLLV----------------------GQRVWQLAFT 257 (300)
T ss_pred cCCccceEECCCCCEEEEEcCCCCeEEEEEC------CCCcEEEEEEe----------------------CCCcceEEEC
Confidence 2357889999955577998887888999985 23443322110 1237789999
Q ss_pred CCCc-EEEEEC--CCEEEEcC-CCcE
Q psy8782 347 ADNI-LYFADG--TNIRMVDR-DGIV 368 (482)
Q Consensus 347 ~~G~-lyvaD~--~nIr~i~~-~G~i 368 (482)
++|. ||++.. +.|+++|. ++++
T Consensus 258 ~~g~~l~~~~~~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 258 PDEKYLLTTNGVSNDVSVIDVAALKV 283 (300)
T ss_pred CCCCEEEEEcCCCCeEEEEECCCCcE
Confidence 9987 566543 33888886 4553
No 35
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=98.13 E-value=3.5e-06 Score=52.24 Aligned_cols=26 Identities=23% Similarity=0.459 Sum_probs=24.0
Q ss_pred CCCceEEEEcCCCcEEEEeC--CcEEEE
Q psy8782 119 LLAPVALATAPDGSLFVGDF--NLIRRI 144 (482)
Q Consensus 119 l~~P~glavd~~G~lyvaD~--~~Irki 144 (482)
|..|.||+++++|+|||+|. |||+++
T Consensus 1 f~~P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence 67899999999999999999 899875
No 36
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.11 E-value=0.00059 Score=65.71 Aligned_cols=208 Identities=18% Similarity=0.201 Sum_probs=120.0
Q ss_pred CceEEEEcCCCc-EEEEeC--CcEEEEcCCCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCCCe
Q psy8782 121 APVALATAPDGS-LFVGDF--NLIRRIMTDGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKPRI 197 (482)
Q Consensus 121 ~P~glavd~~G~-lyvaD~--~~Irki~~~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~~~ 197 (482)
.-++|+.+|+-+ ||..-. -.|..++.+|.+...+... -+.+|.+|.|..+|.-+......+.
T Consensus 87 nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~---------------g~~DpE~Ieyig~n~fvi~dER~~~ 151 (316)
T COG3204 87 NVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLT---------------GFSDPETIEYIGGNQFVIVDERDRA 151 (316)
T ss_pred cccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccc---------------ccCChhHeEEecCCEEEEEehhcce
Confidence 357899999766 544433 5899999999977655331 1467999999876532222223333
Q ss_pred EE--EEcCCCccccCCCcCC-CCCCCceeecCCccEEEEcC-CCCEEEEEC-C--cEEEEc--CCCeEEEEEeeccCC--
Q psy8782 198 IK--TTLGDGHQRPLDCKDC-NGEAGPKQRLLAPVALATAP-DGSLFVGDF-N--LIRRIM--TDGTVRTVVRLNVTR-- 266 (482)
Q Consensus 198 i~--~~~g~G~~~~~~~~~~-~g~~~~~~~l~~P~giavd~-~G~lyv~D~-~--~I~~i~--~~G~v~~~~g~~~~~-- 266 (482)
+. ++..+........... -+. ...+=..=.|+|.|+ ++.+||+-. + +|++++ ++.-...+.......
T Consensus 152 l~~~~vd~~t~~~~~~~~~i~L~~--~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~ 229 (316)
T COG3204 152 LYLFTVDADTTVISAKVQKIPLGT--TNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRD 229 (316)
T ss_pred EEEEEEcCCccEEeccceEEeccc--cCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccc
Confidence 33 2233322221110000 000 001112346999999 458888877 4 555554 222111111111111
Q ss_pred --CCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCc-EEEEecCCcccCCCCCCccCCCccccccccCCcceE
Q psy8782 267 --VAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYN-VEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGV 343 (482)
Q Consensus 267 --~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~-~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~gi 343 (482)
+.--+|+.+++..+.|+|-....+++..++. +|. ++.+.=+ .|. ........+|.||
T Consensus 230 ~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~-------~G~~~~~lsL~-----------~g~--~gL~~dipqaEGi 289 (316)
T COG3204 230 LFVLDVSGLEFNAITNSLLVLSDESRRLLEVDL-------SGEVIELLSLT-----------KGN--HGLSSDIPQAEGI 289 (316)
T ss_pred eEeeccccceecCCCCcEEEEecCCceEEEEec-------CCCeeeeEEec-----------cCC--CCCcccCCCccee
Confidence 2345688999888999999999999999994 565 3332211 111 1224457889999
Q ss_pred EEeCCCcEEEEECCC-EEEEcCC
Q psy8782 344 AVSADNILYFADGTN-IRMVDRD 365 (482)
Q Consensus 344 avd~~G~lyvaD~~n-Ir~i~~~ 365 (482)
|.|.+|+|||+.--| ..++.++
T Consensus 290 amDd~g~lYIvSEPnlfy~F~~~ 312 (316)
T COG3204 290 AMDDDGNLYIVSEPNLFYRFTPQ 312 (316)
T ss_pred EECCCCCEEEEecCCcceecccC
Confidence 999999999887666 5566554
No 37
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.05 E-value=0.0095 Score=60.30 Aligned_cols=214 Identities=14% Similarity=0.076 Sum_probs=112.4
Q ss_pred CceEEEEcCCCc-EEEEeC-----------CcEEEEcC-CCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCC
Q psy8782 121 APVALATAPDGS-LFVGDF-----------NLIRRIMT-DGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGS 187 (482)
Q Consensus 121 ~P~glavd~~G~-lyvaD~-----------~~Irki~~-~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~ 187 (482)
.|.++ +.+||. ||||.+ +.|..+|. ++++..-+..+... .+.....|..+++++||.
T Consensus 48 ~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p---------~~~~~~~~~~~~ls~dgk 117 (352)
T TIGR02658 48 LPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGP---------RFLVGTYPWMTSLTPDNK 117 (352)
T ss_pred CCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCc---------hhhccCccceEEECCCCC
Confidence 67786 888875 999987 57888876 35554333222110 011234577888899998
Q ss_pred eEEEEcC--CCeEEEE-----------c-CCCccccCC-C----cCCCCCCCc-------------eee---------cC
Q psy8782 188 NIYLKNK--PRIIKTT-----------L-GDGHQRPLD-C----KDCNGEAGP-------------KQR---------LL 226 (482)
Q Consensus 188 ~lyi~d~--~~~i~~~-----------~-g~G~~~~~~-~----~~~~g~~~~-------------~~~---------l~ 226 (482)
.+||++. ...+..+ . +.+...+.. . ..|.++... ... +.
T Consensus 118 ~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~ 197 (352)
T TIGR02658 118 TLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLIN 197 (352)
T ss_pred EEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCcccccc
Confidence 9998763 2222221 1 111111000 0 012111100 011 13
Q ss_pred CccEEEEcC-CCC-EEEEECCcEEEEcCCCeEE---EEEee---ccC-CCCceee---EEEeCCCCeEEEEe--------
Q psy8782 227 APVALATAP-DGS-LFVGDFNLIRRIMTDGTVR---TVVRL---NVT-RVAYRYH---IAYSPLDGTLYISD-------- 286 (482)
Q Consensus 227 ~P~giavd~-~G~-lyv~D~~~I~~i~~~G~v~---~~~g~---~~~-~~~~p~g---iavd~~~g~lyVaD-------- 286 (482)
.| .+.+ +|. +|++-.+.|..++..+.-. ..+.. ... .--.|.| ++++++.+.|||+.
T Consensus 198 rP---~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~th 274 (352)
T TIGR02658 198 HP---AYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTH 274 (352)
T ss_pred CC---ceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccc
Confidence 34 1223 564 4455448888888544211 11111 100 0113444 99999778999953
Q ss_pred -CCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCc--EEEEECC-C-EEE
Q psy8782 287 -PESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNI--LYFADGT-N-IRM 361 (482)
Q Consensus 287 -~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~--lyvaD~~-n-Ir~ 361 (482)
...+.|..++. .++++...+-. =..|.+|++++||. ||++... + |.+
T Consensus 275 k~~~~~V~ViD~------~t~kvi~~i~v----------------------G~~~~~iavS~Dgkp~lyvtn~~s~~VsV 326 (352)
T TIGR02658 275 KTASRFLFVVDA------KTGKRLRKIEL----------------------GHEIDSINVSQDAKPLLYALSTGDKTLYI 326 (352)
T ss_pred cCCCCEEEEEEC------CCCeEEEEEeC----------------------CCceeeEEECCCCCeEEEEeCCCCCcEEE
Confidence 22368999985 34443222111 13689999999986 7777743 3 999
Q ss_pred EcC-CCc-EEEEEcCC
Q psy8782 362 VDR-DGI-VTTVIGNH 375 (482)
Q Consensus 362 i~~-~G~-i~ti~G~~ 375 (482)
+|. .++ +.++.+.+
T Consensus 327 iD~~t~k~i~~i~~vg 342 (352)
T TIGR02658 327 FDAETGKELSSVNQLG 342 (352)
T ss_pred EECcCCeEEeeeccCC
Confidence 996 554 34442333
No 38
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=97.97 E-value=0.0014 Score=64.80 Aligned_cols=201 Identities=16% Similarity=0.176 Sum_probs=108.7
Q ss_pred CceEEEEcCCCcEEEEeCC--------------cEEEEcC-CCeEEEEEeeCCCcccCCCccccccccccCCceEEEecC
Q psy8782 121 APVALATAPDGSLFVGDFN--------------LIRRIMT-DGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGD 185 (482)
Q Consensus 121 ~P~glavd~~G~lyvaD~~--------------~Irki~~-~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~ 185 (482)
+..++.+|+.|.|||.|.. +|..+|. ++++.........-. .+ ...-+.+.++..
T Consensus 2 sV~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~-------~~---~s~lndl~VD~~ 71 (287)
T PF03022_consen 2 SVQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIA-------PP---DSFLNDLVVDVR 71 (287)
T ss_dssp -EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS--------T---CGGEEEEEEECT
T ss_pred cccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHc-------cc---ccccceEEEEcc
Confidence 3578999999999999971 5777775 355443332221110 00 011245566652
Q ss_pred C-----CeEEEEcCC--CeEEEEcCCCccccCCCcCC--CC-------CCCceeecCCccEEEEcC---CC-CEEEEEC-
Q psy8782 186 G-----SNIYLKNKP--RIIKTTLGDGHQRPLDCKDC--NG-------EAGPKQRLLAPVALATAP---DG-SLFVGDF- 244 (482)
Q Consensus 186 g-----~~lyi~d~~--~~i~~~~g~G~~~~~~~~~~--~g-------~~~~~~~l~~P~giavd~---~G-~lyv~D~- 244 (482)
. ..+||+|.. ++|..-..+|+......... .. .+..-.......|++..+ +| .||+.--
T Consensus 72 ~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~ls 151 (287)
T PF03022_consen 72 DGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLS 151 (287)
T ss_dssp TTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT
T ss_pred CCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCC
Confidence 2 368888853 44444444444311100000 00 000111112356788866 43 6999986
Q ss_pred -CcEEEEcC----CCeE---------EEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEE
Q psy8782 245 -NLIRRIMT----DGTV---------RTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEP 310 (482)
Q Consensus 245 -~~I~~i~~----~G~v---------~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~ 310 (482)
.+++++.. +... .+.+|.. .....|+++|+ +|.||+++...+.|.+++...++. ..+.++
T Consensus 152 s~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k---~~~s~g~~~D~-~G~ly~~~~~~~aI~~w~~~~~~~--~~~~~~ 225 (287)
T PF03022_consen 152 SRKLYRVPTSVLRDPSLSDAQALASQVQDLGDK---GSQSDGMAIDP-NGNLYFTDVEQNAIGCWDPDGPYT--PENFEI 225 (287)
T ss_dssp -SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE------SECEEEEET-TTEEEEEECCCTEEEEEETTTSB---GCCEEE
T ss_pred CCcEEEEEHHHhhCccccccccccccceecccc---CCCCceEEECC-CCcEEEecCCCCeEEEEeCCCCcC--ccchhe
Confidence 56888752 2211 2233321 13457899999 999999999999999999422111 115666
Q ss_pred EecCCcccCCCCCCccCCCccccccccCCcceEEEeC--CCcEEEEEC
Q psy8782 311 AVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSA--DNILYFADG 356 (482)
Q Consensus 311 vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~--~G~lyvaD~ 356 (482)
++-. +..|.+|.+++++. +|.|||.-.
T Consensus 226 l~~d-------------------~~~l~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 226 LAQD-------------------PRTLQWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp EEE--------------------CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred eEEc-------------------CceeeccceeeeccccCceEEEEEC
Confidence 6631 12389999999999 999999874
No 39
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=97.92 E-value=0.005 Score=59.85 Aligned_cols=32 Identities=16% Similarity=0.249 Sum_probs=26.1
Q ss_pred cccCCCceEEEEcCCCcEEEEeC--CcEEEEcCC
Q psy8782 116 KQRLLAPVALATAPDGSLFVGDF--NLIRRIMTD 147 (482)
Q Consensus 116 ~~~l~~P~glavd~~G~lyvaD~--~~Irki~~~ 147 (482)
...|..|+||++.|.|-+||+|. +.....+.+
T Consensus 19 Dp~L~N~WGia~~p~~~~WVadngT~~~TlYdg~ 52 (336)
T TIGR03118 19 DPGLRNAWGLSYRPGGPFWVANTGTGTATLYVGN 52 (336)
T ss_pred CccccccceeEecCCCCEEEecCCcceEEeecCC
Confidence 56799999999999999999998 555555544
No 40
>KOG4499|consensus
Probab=97.77 E-value=0.00075 Score=62.87 Aligned_cols=120 Identities=16% Similarity=0.229 Sum_probs=79.2
Q ss_pred EEEEcCCCCEEEEEC-----------CcEEEEcCCCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecC
Q psy8782 230 ALATAPDGSLFVGDF-----------NLIRRIMTDGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNA 298 (482)
Q Consensus 230 giavd~~G~lyv~D~-----------~~I~~i~~~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~ 298 (482)
+--+||+|..|..-. ..+++.-+.+++..++. ++.-|+||+.|.+...+|+.|+.|+.|..++.+
T Consensus 113 DgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~----~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd 188 (310)
T KOG4499|consen 113 DGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWN----CVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYD 188 (310)
T ss_pred cCccCCCCceeeeeeccccccccccccEEEEeccCCCceeeeh----hccCCccccccccCcEEEEEccCceEEeeeecC
Confidence 344677777665432 34666777787777753 566789999998778999999999999555522
Q ss_pred CccCCCCCcE---EEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEECCC--EEEEcC-CCcEEEEE
Q psy8782 299 MDFSAPDYNV---EPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADGTN--IRMVDR-DGIVTTVI 372 (482)
Q Consensus 299 ~~~~~~~g~~---~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~~n--Ir~i~~-~G~i~ti~ 372 (482)
- +.|.+ ..+.--.. ...-.-..|.|+++|.+|+||||-.+. |.++|| +|++..-+
T Consensus 189 ~----~tG~~snr~~i~dlrk---------------~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~ei 249 (310)
T KOG4499|consen 189 C----PTGDLSNRKVIFDLRK---------------SQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEI 249 (310)
T ss_pred C----CcccccCcceeEEecc---------------CCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEE
Confidence 1 23321 11111000 000112469999999999999998766 999997 68865443
No 41
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=97.70 E-value=0.00022 Score=57.09 Aligned_cols=68 Identities=25% Similarity=0.389 Sum_probs=47.9
Q ss_pred eeEEEeCCCCeEEEEeCC-----------------CCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCcccc
Q psy8782 271 YHIAYSPLDGTLYISDPE-----------------SHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPAR 333 (482)
Q Consensus 271 ~giavd~~~g~lyVaD~~-----------------n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~ 333 (482)
++|+|++.+|.||++|.. ++|+.++++ .+++.++++. |
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp------~t~~~~vl~~---------------~---- 55 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDP------STKETTVLLD---------------G---- 55 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEET------TTTEEEEEEE---------------E----
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEEC------CCCeEEEehh---------------C----
Confidence 468999845999999963 478999995 4566677663 2
Q ss_pred ccccCCcceEEEeCCCc-EEEEECCC--EEEEcCCC
Q psy8782 334 DAKLAYPKGVAVSADNI-LYFADGTN--IRMVDRDG 366 (482)
Q Consensus 334 ~a~l~~P~giavd~~G~-lyvaD~~n--Ir~i~~~G 366 (482)
|..|+||++++++. |+|+++.. |.|.--.|
T Consensus 56 ---L~fpNGVals~d~~~vlv~Et~~~Ri~rywl~G 88 (89)
T PF03088_consen 56 ---LYFPNGVALSPDESFVLVAETGRYRILRYWLKG 88 (89)
T ss_dssp ---ESSEEEEEE-TTSSEEEEEEGGGTEEEEEESSS
T ss_pred ---CCccCeEEEcCCCCEEEEEeccCceEEEEEEeC
Confidence 88999999999997 99999987 66665443
No 42
>KOG4499|consensus
Probab=97.62 E-value=0.0011 Score=61.74 Aligned_cols=142 Identities=13% Similarity=0.215 Sum_probs=86.5
Q ss_pred EEEEcCCCcEEEEeC-----------CcEEEEcCCCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEE
Q psy8782 124 ALATAPDGSLFVGDF-----------NLIRRIMTDGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLK 192 (482)
Q Consensus 124 glavd~~G~lyvaD~-----------~~Irki~~~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~ 192 (482)
.--+||+|..|..-+ ..++..-+.+++..+... ..-|+|++++.+....|+.
T Consensus 113 DgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~-----------------v~IsNgl~Wd~d~K~fY~i 175 (310)
T KOG4499|consen 113 DGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNC-----------------VGISNGLAWDSDAKKFYYI 175 (310)
T ss_pred cCccCCCCceeeeeeccccccccccccEEEEeccCCCceeeehh-----------------ccCCccccccccCcEEEEE
Confidence 345788998886532 245666677887777643 2348999999999899998
Q ss_pred cCC-CeEEEEc---CCCccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC--CcEEEEcC-CCeEEEEEeeccC
Q psy8782 193 NKP-RIIKTTL---GDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF--NLIRRIMT-DGTVRTVVRLNVT 265 (482)
Q Consensus 193 d~~-~~i~~~~---g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~--~~I~~i~~-~G~v~~~~g~~~~ 265 (482)
|+. -.+..+. .+|.......- ++-.-.....-..|.||++|.+|+|||+-+ .+|+|++| +|++..-+.....
T Consensus 176 Dsln~~V~a~dyd~~tG~~snr~~i-~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~ 254 (310)
T KOG4499|consen 176 DSLNYEVDAYDYDCPTGDLSNRKVI-FDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTP 254 (310)
T ss_pred ccCceEEeeeecCCCcccccCccee-EEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCC
Confidence 874 3443332 33332110000 000000111223599999999999999999 69999996 5887766554322
Q ss_pred CCCceeeEEEeCC-CCeEEEEe
Q psy8782 266 RVAYRYHIAYSPL-DGTLYISD 286 (482)
Q Consensus 266 ~~~~p~giavd~~-~g~lyVaD 286 (482)
.-+..|+-.. -..+||+-
T Consensus 255 ---qitsccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 255 ---QITSCCFGGKNLDILYVTT 273 (310)
T ss_pred ---ceEEEEecCCCccEEEEEe
Confidence 2345566431 14677764
No 43
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.58 E-value=0.0088 Score=57.83 Aligned_cols=201 Identities=16% Similarity=0.147 Sum_probs=112.6
Q ss_pred eEEecCCceEEE-eeCCCeEEEEeccCccCCCCCcCCCCCCcCcccCCCceEEEEcCCCcEEEEeC--CcEEEE--cCCC
Q psy8782 74 ILQKGDGSNIYL-KNKPRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF--NLIRRI--MTDG 148 (482)
Q Consensus 74 il~~gdG~~~~~-~~~~~~i~tv~G~G~~~~~~~~~~~G~~~~~~~l~~P~glavd~~G~lyvaD~--~~Irki--~~~G 148 (482)
+-|..+-+.+|. ..+|..|..+.-.|+--. ..+-.-|.-|.+|+.-.+|..-++|. +++.++ ++++
T Consensus 91 LTynp~~rtLFav~n~p~~iVElt~~Gdlir---------tiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 91 LTYNPDTRTLFAVTNKPAAIVELTKEGDLIR---------TIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred eeeCCCcceEEEecCCCceEEEEecCCceEE---------EecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 334444444443 345555555555444311 01122377899999998888778887 666665 5665
Q ss_pred eEEEEEe----eCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCCCeEEEEcCCCccccCCCcCCCCCCC-cee
Q psy8782 149 TVRTVVR----LKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKPRIIKTTLGDGHQRPLDCKDCNGEAG-PKQ 223 (482)
Q Consensus 149 ~v~ti~g----~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~~~i~~~~g~G~~~~~~~~~~~g~~~-~~~ 223 (482)
.+..... .+...- - -..=.|+++++..+.+|++..-+-+..+.-++...........+..+ ..-
T Consensus 162 ~~~~~~~~~i~L~~~~k--~---------N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~ 230 (316)
T COG3204 162 TVISAKVQKIPLGTTNK--K---------NKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDL 230 (316)
T ss_pred cEEeccceEEeccccCC--C---------CcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccce
Confidence 5443221 111000 0 01126899999999999986533222221111110000000000000 112
Q ss_pred ecCCccEEEEcC-CCCEEEEEC--CcEEEEcCCCeEEEEEeec------cCCCCceeeEEEeCCCCeEEEEeCCCCEEEE
Q psy8782 224 RLLAPVALATAP-DGSLFVGDF--NLIRRIMTDGTVRTVVRLN------VTRVAYRYHIAYSPLDGTLYISDPESHQILR 294 (482)
Q Consensus 224 ~l~~P~giavd~-~G~lyv~D~--~~I~~i~~~G~v~~~~g~~------~~~~~~p~giavd~~~g~lyVaD~~n~~I~~ 294 (482)
.+..-.|+.+++ .++|+|... +++..++.+|.+...+-.. .....+|.|||+|. +|+|||+.. .+.-+|
T Consensus 231 f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd-~g~lYIvSE-Pnlfy~ 308 (316)
T COG3204 231 FVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDD-DGNLYIVSE-PNLFYR 308 (316)
T ss_pred EeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECC-CCCEEEEec-CCccee
Confidence 244566888886 678887665 7899999999876554331 23456789999998 999999764 345566
Q ss_pred Ee
Q psy8782 295 VK 296 (482)
Q Consensus 295 ~~ 296 (482)
+.
T Consensus 309 F~ 310 (316)
T COG3204 309 FT 310 (316)
T ss_pred cc
Confidence 65
No 44
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=97.53 E-value=0.022 Score=58.37 Aligned_cols=187 Identities=16% Similarity=0.224 Sum_probs=102.9
Q ss_pred EEEEeC--CcEEEEcCC-CeEEEEEeeCCCcccCCCccccccccccC-CceEEEecCCCeEEEEcCCCeEEEEcC-CCcc
Q psy8782 133 LFVGDF--NLIRRIMTD-GTVRTVVRLKNQKFEKFPKILTSCFLSLS-PSGILQKGDGSNIYLKNKPRIIKTTLG-DGHQ 207 (482)
Q Consensus 133 lyvaD~--~~Irki~~~-G~v~ti~g~g~~~~~~~~~~~~~~~~~~~-P~gi~~~~~g~~lyi~d~~~~i~~~~g-~G~~ 207 (482)
+||++. +.|..||.+ .++...+..+. . +.++++.+|+..+|+++.++.+..+.- +++.
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~-----------------~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~ 70 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVARIPTGG-----------------APHAGLKFSPDGRYLYVANRDGTVSVIDLATGKV 70 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEEEE-ST-----------------TEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSE
T ss_pred EEEEecCCCEEEEEECCCCeEEEEEcCCC-----------------CceeEEEecCCCCEEEEEcCCCeEEEEECCcccE
Confidence 346776 888888764 44444333221 1 345667788888999987777776642 3332
Q ss_pred ccCCCcCCCCCCCceeecCCccEEEEcCCCC-EEEEEC--CcEEEEc-CCCeEEEEEeecc----CCCCceeeEEEeCCC
Q psy8782 208 RPLDCKDCNGEAGPKQRLLAPVALATAPDGS-LFVGDF--NLIRRIM-TDGTVRTVVRLNV----TRVAYRYHIAYSPLD 279 (482)
Q Consensus 208 ~~~~~~~~~g~~~~~~~l~~P~giavd~~G~-lyv~D~--~~I~~i~-~~G~v~~~~g~~~----~~~~~p~giavd~~~ 279 (482)
.. .-..=..|.++++.+||. ||++.. +.+..+| .+.++...+.... ..-..+.+|..++..
T Consensus 71 v~-----------~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~ 139 (369)
T PF02239_consen 71 VA-----------TIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGR 139 (369)
T ss_dssp EE-----------EEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSS
T ss_pred EE-----------EEecCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCC
Confidence 10 111223699999999994 778877 8999998 4556555543321 112244577777744
Q ss_pred CeEEEEeCCCCEEEEEecCCccCCCCCcEE-EEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEEC-C
Q psy8782 280 GTLYISDPESHQILRVKNAMDFSAPDYNVE-PAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADG-T 357 (482)
Q Consensus 280 g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~-~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~-~ 357 (482)
...+++-...++|+.++... + .... ..... -..|++..+|++|..|++.. .
T Consensus 140 ~~fVv~lkd~~~I~vVdy~d----~-~~~~~~~i~~----------------------g~~~~D~~~dpdgry~~va~~~ 192 (369)
T PF02239_consen 140 PEFVVNLKDTGEIWVVDYSD----P-KNLKVTTIKV----------------------GRFPHDGGFDPDGRYFLVAANG 192 (369)
T ss_dssp SEEEEEETTTTEEEEEETTT----S-SCEEEEEEE------------------------TTEEEEEE-TTSSEEEEEEGG
T ss_pred CEEEEEEccCCeEEEEEecc----c-cccceeeecc----------------------cccccccccCcccceeeecccc
Confidence 56777788889999998521 1 1111 11110 13688999999987554432 2
Q ss_pred -C-EEEEcC-CCcEEEEEcC
Q psy8782 358 -N-IRMVDR-DGIVTTVIGN 374 (482)
Q Consensus 358 -n-Ir~i~~-~G~i~ti~G~ 374 (482)
| |-++|. ++++..++..
T Consensus 193 sn~i~viD~~~~k~v~~i~~ 212 (369)
T PF02239_consen 193 SNKIAVIDTKTGKLVALIDT 212 (369)
T ss_dssp GTEEEEEETTTTEEEEEEE-
T ss_pred cceeEEEeeccceEEEEeec
Confidence 2 777775 4555444443
No 45
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=97.52 E-value=0.033 Score=57.08 Aligned_cols=151 Identities=17% Similarity=0.240 Sum_probs=83.9
Q ss_pred ceEEEEcCCCc-EEEEeC-CcEEEEcC-CCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcC-CCe
Q psy8782 122 PVALATAPDGS-LFVGDF-NLIRRIMT-DGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNK-PRI 197 (482)
Q Consensus 122 P~glavd~~G~-lyvaD~-~~Irki~~-~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~-~~~ 197 (482)
+.++++.+||. +||+.. ..|.+||. ++++..-+..| .+|.|+++++||..+|+++. ++.
T Consensus 39 h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-----------------~~~~~i~~s~DG~~~~v~n~~~~~ 101 (369)
T PF02239_consen 39 HAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-----------------GNPRGIAVSPDGKYVYVANYEPGT 101 (369)
T ss_dssp EEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-----------------SEEEEEEE--TTTEEEEEEEETTE
T ss_pred eeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-----------------CCcceEEEcCCCCEEEEEecCCCc
Confidence 45677888886 899987 89999987 45554333332 35899999999999999874 455
Q ss_pred EEEEc-CCCcccc-CCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC---CcEEEEcCCC-e--EEEEEeeccCCCCc
Q psy8782 198 IKTTL-GDGHQRP-LDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF---NLIRRIMTDG-T--VRTVVRLNVTRVAY 269 (482)
Q Consensus 198 i~~~~-g~G~~~~-~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~---~~I~~i~~~G-~--v~~~~g~~~~~~~~ 269 (482)
+..+. .+.+... ....... ....-.++.+|...+....||... .+|..++... + ..+.+.. -..
T Consensus 102 v~v~D~~tle~v~~I~~~~~~----~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~----g~~ 173 (369)
T PF02239_consen 102 VSVIDAETLEPVKTIPTGGMP----VDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKV----GRF 173 (369)
T ss_dssp EEEEETTT--EEEEEE--EE-----TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE------TT
T ss_pred eeEeccccccceeeccccccc----ccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecc----ccc
Confidence 55443 3333210 0000000 000112345666666666555443 6788777322 1 2233221 247
Q ss_pred eeeEEEeCCCCeEEEEeCCCCEEEEEec
Q psy8782 270 RYHIAYSPLDGTLYISDPESHQILRVKN 297 (482)
Q Consensus 270 p~giavd~~~g~lyVaD~~n~~I~~~~~ 297 (482)
|.+..++|+...++++....+.|-.++.
T Consensus 174 ~~D~~~dpdgry~~va~~~sn~i~viD~ 201 (369)
T PF02239_consen 174 PHDGGFDPDGRYFLVAANGSNKIAVIDT 201 (369)
T ss_dssp EEEEEE-TTSSEEEEEEGGGTEEEEEET
T ss_pred ccccccCcccceeeecccccceeEEEee
Confidence 8999999933467787888889999995
No 46
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=97.47 E-value=0.032 Score=57.04 Aligned_cols=113 Identities=18% Similarity=0.282 Sum_probs=66.7
Q ss_pred eecCCccEEEEcCCCCEEEEECCcEEEEcCCC--eEEE---EE-eeccCCCCceeeEEEeCCCCeEEEEeCCC-------
Q psy8782 223 QRLLAPVALATAPDGSLFVGDFNLIRRIMTDG--TVRT---VV-RLNVTRVAYRYHIAYSPLDGTLYISDPES------- 289 (482)
Q Consensus 223 ~~l~~P~giavd~~G~lyv~D~~~I~~i~~~G--~v~~---~~-g~~~~~~~~p~giavd~~~g~lyVaD~~n------- 289 (482)
..+..|.+++.-. +.+|++..-.+.+++ .| ++.. ++ ........+-..|+++| +|.|||+--.+
T Consensus 128 ~~~~~~~~~a~~~-~~~~~~n~~~~~~~~-~g~~~l~~~~~i~~~lP~~~~H~g~~l~f~p-DG~Lyvs~G~~~~~~~aq 204 (399)
T COG2133 128 QGRLVYFGISEPG-GGLYVANRVAIGRLP-GGDTKLSEPKVIFRGIPKGGHHFGGRLVFGP-DGKLYVTTGSNGDPALAQ 204 (399)
T ss_pred ccceeeeEEEeec-CCceEEEEEEEEEcC-CCccccccccEEeecCCCCCCcCcccEEECC-CCcEEEEeCCCCCccccc
Confidence 4467788998864 678998887777776 23 2221 21 11112234456799999 88999985443
Q ss_pred ------CEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCC-CcEEEEECCC
Q psy8782 290 ------HQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSAD-NILYFADGTN 358 (482)
Q Consensus 290 ------~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~-G~lyvaD~~n 358 (482)
++|.+++. ++.+. ...|+. + ..--.--+.+|.|+++++. |.||++|.+.
T Consensus 205 ~~~~~~Gk~~r~~~-------a~~~~-------~d~p~~----~--~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~ 260 (399)
T COG2133 205 DNVSLAGKVLRIDR-------AGIIP-------ADNPFP----N--SEIWSYGHRNPQGLAWHPVTGALWTTEHGP 260 (399)
T ss_pred Cccccccceeeecc-------Ccccc-------cCCCCC----C--cceEEeccCCccceeecCCCCcEEEEecCC
Confidence 33444442 11111 111110 0 0111223789999999997 9999999876
No 47
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=97.34 E-value=0.018 Score=56.99 Aligned_cols=71 Identities=14% Similarity=0.111 Sum_probs=49.5
Q ss_pred ccEEEEcCCCCEEEEECC--------------cEEEEc-CCCeEEEEEeeccC---CCCceeeEEEeCCC-----CeEEE
Q psy8782 228 PVALATAPDGSLFVGDFN--------------LIRRIM-TDGTVRTVVRLNVT---RVAYRYHIAYSPLD-----GTLYI 284 (482)
Q Consensus 228 P~giavd~~G~lyv~D~~--------------~I~~i~-~~G~v~~~~g~~~~---~~~~p~giavd~~~-----g~lyV 284 (482)
..++.+|+.|.|||.|.+ +|..|| .++++...+-.... .-.+...|+||..+ +.+||
T Consensus 3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYI 82 (287)
T PF03022_consen 3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYI 82 (287)
T ss_dssp EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEE
T ss_pred ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEE
Confidence 468999999999999972 577787 45666665554322 23466789998733 58999
Q ss_pred EeCCCCEEEEEecC
Q psy8782 285 SDPESHQILRVKNA 298 (482)
Q Consensus 285 aD~~n~~I~~~~~~ 298 (482)
+|.....|..++..
T Consensus 83 tD~~~~glIV~dl~ 96 (287)
T PF03022_consen 83 TDSGGPGLIVYDLA 96 (287)
T ss_dssp EETTTCEEEEEETT
T ss_pred eCCCcCcEEEEEcc
Confidence 99998888888863
No 48
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=97.30 E-value=0.081 Score=54.19 Aligned_cols=257 Identities=20% Similarity=0.242 Sum_probs=137.2
Q ss_pred cccCCCeEEecCCceEEEeeCC-CeEEEEeccCccCC-C------CCcCCCCCCcC------cccCCCceEEEEcCCCcE
Q psy8782 68 YNFHEGILQKGDGSNIYLKNKP-RIIKTTLGDGHQRP-L------DCKDCNGEAGP------KQRLLAPVALATAPDGSL 133 (482)
Q Consensus 68 ~~~~~gil~~gdG~~~~~~~~~-~~i~tv~G~G~~~~-~------~~~~~~G~~~~------~~~l~~P~glavd~~G~l 133 (482)
++-+.+++...|| .+.+...+ +.+..+...+.... . ...+.+|.... ...+..|.+++.- .+.+
T Consensus 66 Le~p~~~~~lP~G-~~~v~er~~G~l~~i~~g~~~~~~~~~~~~~~~~~~~Gll~~al~~~fa~~~~~~~~~a~~-~~~~ 143 (399)
T COG2133 66 LEHPWGLARLPDG-VLLVTERPTGRLRLISDGGSASPPVSTVPIVLLRGQGGLLDIALSPDFAQGRLVYFGISEP-GGGL 143 (399)
T ss_pred ccCchhheecCCc-eEEEEccCCccEEEecCCCcccccccccceEEeccCCCccceEecccccccceeeeEEEee-cCCc
Confidence 4567788888999 66666655 66665553222111 0 01122232211 3456778888876 4557
Q ss_pred EEEeCCcEEEEcC-CCeEEE---EE-eeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCCC------------
Q psy8782 134 FVGDFNLIRRIMT-DGTVRT---VV-RLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKPR------------ 196 (482)
Q Consensus 134 yvaD~~~Irki~~-~G~v~t---i~-g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~~------------ 196 (482)
|++..-.+-+++. +.+++. ++ +..... ...-.-|++++|| +|||+-..+
T Consensus 144 ~~~n~~~~~~~~~g~~~l~~~~~i~~~lP~~~-------------~H~g~~l~f~pDG-~Lyvs~G~~~~~~~aq~~~~~ 209 (399)
T COG2133 144 YVANRVAIGRLPGGDTKLSEPKVIFRGIPKGG-------------HHFGGRLVFGPDG-KLYVTTGSNGDPALAQDNVSL 209 (399)
T ss_pred eEEEEEEEEEcCCCccccccccEEeecCCCCC-------------CcCcccEEECCCC-cEEEEeCCCCCcccccCcccc
Confidence 8887766666661 122221 11 111000 1123457777777 888862211
Q ss_pred --eEEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcCC-CCEEEEECCc--E------EEEcCCCeE----EEEEe
Q psy8782 197 --IIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPD-GSLFVGDFNL--I------RRIMTDGTV----RTVVR 261 (482)
Q Consensus 197 --~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~-G~lyv~D~~~--I------~~i~~~G~v----~~~~g 261 (482)
.+-.+.-.+.. +.+.+. .+.-.-...+..|.|++.+|. |.||++|..+ + -.+ ..|+. ...+|
T Consensus 210 ~Gk~~r~~~a~~~-~~d~p~-~~~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~d~~~~~Deln~i-~~G~nYGWP~~~~G 286 (399)
T COG2133 210 AGKVLRIDRAGII-PADNPF-PNSEIWSYGHRNPQGLAWHPVTGALWTTEHGPDALRGPDELNSI-RPGKNYGWPYAYFG 286 (399)
T ss_pred ccceeeeccCccc-ccCCCC-CCcceEEeccCCccceeecCCCCcEEEEecCCCcccCccccccc-ccCCccCCceeccC
Confidence 11111111111 111000 111113456788999999996 9999999832 2 111 12221 11112
Q ss_pred ec----------------cC-----CCCceeeEEEeCCC------CeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecC
Q psy8782 262 LN----------------VT-----RVAYRYHIAYSPLD------GTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGS 314 (482)
Q Consensus 262 ~~----------------~~-----~~~~p~giavd~~~------g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~ 314 (482)
.. .. .-..|.||++..-+ +.|+|+......+.+++ ++|..+++...
T Consensus 287 ~~~~g~~~~~~~~~~~~~~p~~~~~~h~ApsGmaFy~G~~fP~~r~~lfV~~hgsw~~~~~~-------~~g~~~~~~~~ 359 (399)
T COG2133 287 QNYDGRAIPDGTVVAGAIQPVYTWAPHIAPSGMAFYTGDLFPAYRGDLFVGAHGSWPVLRLR-------PDGNYKVVLTG 359 (399)
T ss_pred cccCccccCCCcccccccCCceeeccccccceeEEecCCcCccccCcEEEEeecceeEEEec-------cCCCcceEEEE
Confidence 10 00 11246899997422 69999999888888877 57775554421
Q ss_pred CcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEECC-C--EEEEcCCC
Q psy8782 315 GERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADGT-N--IRMVDRDG 366 (482)
Q Consensus 315 g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~~-n--Ir~i~~~G 366 (482)
. ..+|. -..|.++++.+||.|||+|-. + |.|+...+
T Consensus 360 f---------l~~d~-------~gR~~dV~v~~DGallv~~D~~~g~i~Rv~~~~ 398 (399)
T COG2133 360 F---------LSGDL-------GGRPRDVAVAPDGALLVLTDQGDGRILRVSYAG 398 (399)
T ss_pred E---------EecCC-------CCcccceEECCCCeEEEeecCCCCeEEEecCCC
Confidence 1 11222 158999999999999999876 3 66665543
No 49
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=97.19 E-value=0.044 Score=53.83 Aligned_cols=209 Identities=14% Similarity=0.157 Sum_probs=115.6
Q ss_pred cccCCCceEEEEcCCCcEEEEeCCcEEEEcCCCeEEEEEeeCCCcccCCCccccc-cccccCCceEEEecCCCeEEEEcC
Q psy8782 116 KQRLLAPVALATAPDGSLFVGDFNLIRRIMTDGTVRTVVRLKNQKFEKFPKILTS-CFLSLSPSGILQKGDGSNIYLKNK 194 (482)
Q Consensus 116 ~~~l~~P~glavd~~G~lyvaD~~~Irki~~~G~v~ti~g~g~~~~~~~~~~~~~-~~~~~~P~gi~~~~~g~~lyi~d~ 194 (482)
...|.+|.||++.+ ..||++....|+++-..-++.. .+....++..---+... ..--.+-..+++ .+++-++|...
T Consensus 45 ~r~F~r~MGl~~~~-~~l~~~t~~qiw~f~~~~n~l~-~~~~~~~~D~~yvPr~~~~TGdidiHdia~-~~~~l~fVNT~ 121 (335)
T TIGR03032 45 ERTFPRPMGLAVSP-QSLTLGTRYQLWRFANVDNLLP-AGQTHPGYDRLYVPRASYVTGDIDAHDLAL-GAGRLLFVNTL 121 (335)
T ss_pred eeccCccceeeeeC-CeEEEEEcceeEEccccccccc-ccccCCCCCeEEeeeeeeeccCcchhheee-cCCcEEEEECc
Confidence 56799999999976 4699999988888822111111 00000011000000000 000123345666 44444555555
Q ss_pred CCeEEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEECC------cEEEEcCCCeEEEEEeec---cC
Q psy8782 195 PRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDFN------LIRRIMTDGTVRTVVRLN---VT 265 (482)
Q Consensus 195 ~~~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~~------~I~~i~~~G~v~~~~g~~---~~ 265 (482)
-..+.++...-++.|...+.+-...+.+ .=.+-+|||.....--||+-.. .=|.-..+|-+..-+..+ ..
T Consensus 122 fSCLatl~~~~SF~P~WkPpFIs~la~e-DRCHLNGlA~~~g~p~yVTa~~~sD~~~gWR~~~~~gG~vidv~s~evl~~ 200 (335)
T TIGR03032 122 FSCLATVSPDYSFVPLWKPPFISKLAPE-DRCHLNGMALDDGEPRYVTALSQSDVADGWREGRRDGGCVIDIPSGEVVAS 200 (335)
T ss_pred ceeEEEECCCCccccccCCccccccCcc-CceeecceeeeCCeEEEEEEeeccCCcccccccccCCeEEEEeCCCCEEEc
Confidence 6778888888877765543332221111 0123457888654456766541 111112233222211111 34
Q ss_pred CCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEE
Q psy8782 266 RVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAV 345 (482)
Q Consensus 266 ~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giav 345 (482)
.+..|.+--.. +|.||++|.+.+.|.+++. .+|..++++-- -..|.||++
T Consensus 201 GLsmPhSPRWh--dgrLwvldsgtGev~~vD~------~~G~~e~Va~v----------------------pG~~rGL~f 250 (335)
T TIGR03032 201 GLSMPHSPRWY--QGKLWLLNSGRGELGYVDP------QAGKFQPVAFL----------------------PGFTRGLAF 250 (335)
T ss_pred CccCCcCCcEe--CCeEEEEECCCCEEEEEcC------CCCcEEEEEEC----------------------CCCCcccce
Confidence 56677777776 7999999999999999994 34998888731 126899999
Q ss_pred eCCCcEEEEECCCEE
Q psy8782 346 SADNILYFADGTNIR 360 (482)
Q Consensus 346 d~~G~lyvaD~~nIr 360 (482)
. |.+.|.-....|
T Consensus 251 ~--G~llvVgmSk~R 263 (335)
T TIGR03032 251 A--GDFAFVGLSKLR 263 (335)
T ss_pred e--CCEEEEEecccc
Confidence 7 777766554444
No 50
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.14 E-value=0.37 Score=48.88 Aligned_cols=54 Identities=15% Similarity=0.078 Sum_probs=34.1
Q ss_pred CcEEEEcC-CCeEEEEEeeccC----CCCceeeEEEeCCCCeEEEEeCC-CCEEEEEecC
Q psy8782 245 NLIRRIMT-DGTVRTVVRLNVT----RVAYRYHIAYSPLDGTLYISDPE-SHQILRVKNA 298 (482)
Q Consensus 245 ~~I~~i~~-~G~v~~~~g~~~~----~~~~p~giavd~~~g~lyVaD~~-n~~I~~~~~~ 298 (482)
+.|..+|. ++++..-+..+.. ....|..++++|++..|||++.. .+.|-.+|..
T Consensus 77 d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~ 136 (352)
T TIGR02658 77 DYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLE 136 (352)
T ss_pred CEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECC
Confidence 34666653 3444433332211 24567899999955589999866 8888888863
No 51
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.10 E-value=0.14 Score=49.44 Aligned_cols=190 Identities=16% Similarity=0.161 Sum_probs=103.3
Q ss_pred CceEEEEcCCCcEEEEeC----CcEEEEcCC-CeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEc-C
Q psy8782 121 APVALATAPDGSLFVGDF----NLIRRIMTD-GTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKN-K 194 (482)
Q Consensus 121 ~P~glavd~~G~lyvaD~----~~Irki~~~-G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d-~ 194 (482)
+-.|+.++.+|.||.+.. .+||+++++ |++.........-| ..|+.+.. +.||.-- .
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~F---------------gEGit~~~--d~l~qLTWk 108 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYF---------------GEGITILG--DKLYQLTWK 108 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT-----------------EEEEEEET--TEEEEEESS
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcccc---------------ceeEEEEC--CEEEEEEec
Confidence 457899988999999997 599999875 77765444332222 34565553 2444322 1
Q ss_pred CCeEEEEcCC-CccccCCCcCCCCCCCceeec---CCccEEEEcCCCCEEEEEC-CcEEEEcCCC-eEEEEEee--ccCC
Q psy8782 195 PRIIKTTLGD-GHQRPLDCKDCNGEAGPKQRL---LAPVALATAPDGSLFVGDF-NLIRRIMTDG-TVRTVVRL--NVTR 266 (482)
Q Consensus 195 ~~~i~~~~g~-G~~~~~~~~~~~g~~~~~~~l---~~P~giavd~~G~lyv~D~-~~I~~i~~~G-~v~~~~g~--~~~~ 266 (482)
.+..-.+..+ -+ ...+| ...+||+.|. ..||++|. ++++.++|.- +....+.. ....
T Consensus 109 ~~~~f~yd~~tl~--------------~~~~~~y~~EGWGLt~dg-~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~p 173 (264)
T PF05096_consen 109 EGTGFVYDPNTLK--------------KIGTFPYPGEGWGLTSDG-KRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRP 173 (264)
T ss_dssp SSEEEEEETTTTE--------------EEEEEE-SSS--EEEECS-SCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE
T ss_pred CCeEEEEccccce--------------EEEEEecCCcceEEEcCC-CEEEEECCccceEEECCcccceEEEEEEEECCEE
Confidence 2222222111 00 11122 2468999774 58999999 8999999863 33332221 1222
Q ss_pred CCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEe
Q psy8782 267 VAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVS 346 (482)
Q Consensus 267 ~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd 346 (482)
...-+-|-.- +|.||---....+|.+|++ .+|.+.-+.--..--. ....+. .....-.--+|||.|
T Consensus 174 v~~LNELE~i--~G~IyANVW~td~I~~Idp------~tG~V~~~iDls~L~~----~~~~~~--~~~~~~dVLNGIAyd 239 (264)
T PF05096_consen 174 VSNLNELEYI--NGKIYANVWQTDRIVRIDP------ETGKVVGWIDLSGLRP----EVGRDK--SRQPDDDVLNGIAYD 239 (264)
T ss_dssp ---EEEEEEE--TTEEEEEETTSSEEEEEET------TT-BEEEEEE-HHHHH----HHTSTT--ST--TTS-EEEEEEE
T ss_pred CCCcEeEEEE--cCEEEEEeCCCCeEEEEeC------CCCeEEEEEEhhHhhh----cccccc--cccccCCeeEeEeEe
Confidence 3344556554 7999999999999999997 6788776653111000 000000 001113346799999
Q ss_pred CC-CcEEEEEC
Q psy8782 347 AD-NILYFADG 356 (482)
Q Consensus 347 ~~-G~lyvaD~ 356 (482)
++ +.+||+--
T Consensus 240 ~~~~~l~vTGK 250 (264)
T PF05096_consen 240 PETDRLFVTGK 250 (264)
T ss_dssp TTTTEEEEEET
T ss_pred CCCCEEEEEeC
Confidence 76 56888764
No 52
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=97.09 E-value=0.0052 Score=65.66 Aligned_cols=104 Identities=21% Similarity=0.234 Sum_probs=66.3
Q ss_pred cCCCCceeeEEEeCCCCeEEEEeCCCC-------------------EEEEEecCCccC-CCCCcEEEE--ecCCcccCCC
Q psy8782 264 VTRVAYRYHIAYSPLDGTLYISDPESH-------------------QILRVKNAMDFS-APDYNVEPA--VGSGERCLPG 321 (482)
Q Consensus 264 ~~~~~~p~giavd~~~g~lyVaD~~n~-------------------~I~~~~~~~~~~-~~~g~~~~v--aG~g~~~~~g 321 (482)
.+.|..|.+|+++|.++.|||+.+.+. +|+++.....-+ ....+++++ +|......
T Consensus 346 AT~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~-- 423 (524)
T PF05787_consen 346 ATPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDAS-- 423 (524)
T ss_pred cccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccc--
Confidence 567899999999998999999987776 899998532100 001133333 33211100
Q ss_pred CCCccCCCccccccccCCcceEEEeCCCcEEEEECCC-----EEEEcCCCcEEEEEc
Q psy8782 322 DEAHCGDGAPARDAKLAYPKGVAVSADNILYFADGTN-----IRMVDRDGIVTTVIG 373 (482)
Q Consensus 322 ~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~~n-----Ir~i~~~G~i~ti~G 373 (482)
. ..........|.+|.+|+||++|+|||++-.. ++-..++|.+..++.
T Consensus 424 ---~-~~~~~~~~~~f~sPDNL~~d~~G~LwI~eD~~~~~~~l~g~t~~G~~~~~~~ 476 (524)
T PF05787_consen 424 ---G-NGSNKCDDNGFASPDNLAFDPDGNLWIQEDGGGSNNNLPGVTPDGEVYDFAR 476 (524)
T ss_pred ---c-cccCcccCCCcCCCCceEECCCCCEEEEeCCCCCCcccccccccCceeeeee
Confidence 0 01112335669999999999999999985432 345567787776653
No 53
>KOG0291|consensus
Probab=97.01 E-value=0.38 Score=52.00 Aligned_cols=213 Identities=15% Similarity=0.118 Sum_probs=115.6
Q ss_pred ccEEEEcCCCCEEEEEC--CcEEEEcCC-C-eEEEEEeeccCCCCceeeEEEeCCCCeEEEEeC-CCCEEEEEecCCccC
Q psy8782 228 PVALATAPDGSLFVGDF--NLIRRIMTD-G-TVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDP-ESHQILRVKNAMDFS 302 (482)
Q Consensus 228 P~giavd~~G~lyv~D~--~~I~~i~~~-G-~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~-~n~~I~~~~~~~~~~ 302 (482)
-.++.+...|+..++-+ ++||.+|.. . .+.|+... ...+-..+|+|| .|.|.++-. ..-.|..++.
T Consensus 395 Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P---~p~QfscvavD~-sGelV~AG~~d~F~IfvWS~----- 465 (893)
T KOG0291|consen 395 VTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSP---EPIQFSCVAVDP-SGELVCAGAQDSFEIFVWSV----- 465 (893)
T ss_pred eEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCC---CceeeeEEEEcC-CCCEEEeeccceEEEEEEEe-----
Confidence 45777888898888888 888888843 2 34444322 223346799999 777777654 4556777775
Q ss_pred CCCCc-EEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEECCC--EEE---EcCCCcEEEEEcCCC
Q psy8782 303 APDYN-VEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADGTN--IRM---VDRDGIVTTVIGNHM 376 (482)
Q Consensus 303 ~~~g~-~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~~n--Ir~---i~~~G~i~ti~G~~~ 376 (482)
.+|. +.++.|. +| | -.+++++++|.+.++-+.. ||+ ++..|++.|+.-...
T Consensus 466 -qTGqllDiLsGH-------------Eg-P--------Vs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sd 522 (893)
T KOG0291|consen 466 -QTGQLLDILSGH-------------EG-P--------VSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSD 522 (893)
T ss_pred -ecCeeeehhcCC-------------CC-c--------ceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccc
Confidence 4565 3344432 11 1 3578999999977776543 775 457889988864443
Q ss_pred CCCCCCcCCCCc-eEEeccccceeEEeecCcceEEecccCCCceEEEeeceeeeeeeeeeecccceeeeeeEEcCCCcEE
Q psy8782 377 HKSHWKPIPCEG-TLNIEEVSETMRDIRHTTGWACYGTGDNDHMTLIHCYGVMQDVVTSVFNNSHFLDVHFSHQDQDLFY 455 (482)
Q Consensus 377 ~~~~~~~~~~dg-~l~v~~~~~~~~~l~~p~giav~~~g~n~~~~~~~~~g~~~~~~~~~~n~~~~~~~~i~~~~~g~~y 455 (482)
.. ...+.+|| .|.++....+|.-++.-.++-+..- .+|-... +-....+..+...+++..+...|+...+|...
T Consensus 523 vl--~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~I--dgrkD~~-~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~I 597 (893)
T KOG0291|consen 523 VL--AVSFRPDGKELAVATLDGQITFFDIKEAVQVGSI--DGRKDLS-GGRKETDRITAENSAKGKTFTTICYSADGKCI 597 (893)
T ss_pred ee--EEEEcCCCCeEEEEEecceEEEEEhhhceeeccc--cchhhcc-ccccccceeehhhcccCCceEEEEEcCCCCEE
Confidence 32 24455666 4555444333332222222222100 0000000 00011122222222333344568888888877
Q ss_pred EEeCCCCee-------EEeeccceeecCC
Q psy8782 456 FVKELPQKI-------RDDLDELKLSSNN 477 (482)
Q Consensus 456 i~d~~n~rI-------rk~~~~~~~~~~~ 477 (482)
+|---.+-| +-+|.++++|-|-
T Consensus 598 lAgG~sn~iCiY~v~~~vllkkfqiS~N~ 626 (893)
T KOG0291|consen 598 LAGGESNSICIYDVPEGVLLKKFQISDNR 626 (893)
T ss_pred EecCCcccEEEEECchhheeeeEEecccc
Confidence 774433333 2345666666553
No 54
>KOG0318|consensus
Probab=96.30 E-value=1.7 Score=45.25 Aligned_cols=203 Identities=14% Similarity=0.104 Sum_probs=106.3
Q ss_pred eecCCccEEEEcCCC-CEEEEEC-CcEEEEcC-CCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCC
Q psy8782 223 QRLLAPVALATAPDG-SLFVGDF-NLIRRIMT-DGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAM 299 (482)
Q Consensus 223 ~~l~~P~giavd~~G-~lyv~D~-~~I~~i~~-~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~ 299 (482)
.....-..+++.++| .||-++. ++|..++. .|.-..++|.. .-+.-.+++.+. .+.||.+-. ...+++++...
T Consensus 318 GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~--h~nqI~~~~~~~-~~~~~t~g~-Dd~l~~~~~~~ 393 (603)
T KOG0318|consen 318 GHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKG--HTNQIKGMAASE-SGELFTIGW-DDTLRVISLKD 393 (603)
T ss_pred ccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccccccccc--ccceEEEEeecC-CCcEEEEec-CCeEEEEeccc
Confidence 334456789999988 4565666 78888873 45555555432 234567788875 577777655 45677776310
Q ss_pred ccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEE-EECCCEEEEcCCCcEEEEEcCCCCC
Q psy8782 300 DFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYF-ADGTNIRMVDRDGIVTTVIGNHMHK 378 (482)
Q Consensus 300 ~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyv-aD~~nIr~i~~~G~i~ti~G~~~~~ 378 (482)
+| +.... ....=.+|.|+|+.++|.+-+ +-...|..+..-+.++++- .+. .
T Consensus 394 -----~~------------------~t~~~---~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~-~~y-~ 445 (603)
T KOG0318|consen 394 -----NG------------------YTKSE---VVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIP-IGY-E 445 (603)
T ss_pred -----Cc------------------ccccc---eeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeec-ccc-c
Confidence 00 11111 001126799999999975444 4444466665444444432 222 1
Q ss_pred CCCCcCCCCceEEeccccceeEEeecCcceEEecccCCCceEEEeece--eeeeeeeeeecccceeeeeeEEcCCCcEEE
Q psy8782 379 SHWKPIPCEGTLNIEEVSETMRDIRHTTGWACYGTGDNDHMTLIHCYG--VMQDVVTSVFNNSHFLDVHFSHQDQDLFYF 456 (482)
Q Consensus 379 ~~~~~~~~dg~l~v~~~~~~~~~l~~p~giav~~~g~n~~~~~~~~~g--~~~~~~~~~~n~~~~~~~~i~~~~~g~~yi 456 (482)
+...++.+++. .+||.+. ++++.+....| .........-.+ -...+++.++|.++.
T Consensus 446 ~s~vAv~~~~~-----------------~vaVGG~--Dgkvhvysl~g~~l~ee~~~~~h~a---~iT~vaySpd~~yla 503 (603)
T KOG0318|consen 446 SSAVAVSPDGS-----------------EVAVGGQ--DGKVHVYSLSGDELKEEAKLLEHRA---AITDVAYSPDGAYLA 503 (603)
T ss_pred cceEEEcCCCC-----------------EEEEecc--cceEEEEEecCCcccceeeeecccC---CceEEEECCCCcEEE
Confidence 22333344432 2233322 22333333222 111101110011 123578889999888
Q ss_pred EeCCCCeeEEeeccceeecCCCC
Q psy8782 457 VKELPQKIRDDLDELKLSSNNSN 479 (482)
Q Consensus 457 ~d~~n~rIrk~~~~~~~~~~~~~ 479 (482)
+-..+.++--+-.+.+.+.+|+-
T Consensus 504 ~~Da~rkvv~yd~~s~~~~~~~w 526 (603)
T KOG0318|consen 504 AGDASRKVVLYDVASREVKTNRW 526 (603)
T ss_pred EeccCCcEEEEEcccCceeccee
Confidence 87777777776666666655543
No 55
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=96.29 E-value=0.038 Score=57.95 Aligned_cols=88 Identities=20% Similarity=0.218 Sum_probs=56.8
Q ss_pred cCCCCceeeEEEeCCCCeEEEEeCCCC----------------EEEEEecCC-ccCCCCCcEEEEe--cCCcccCCCCCC
Q psy8782 264 VTRVAYRYHIAYSPLDGTLYISDPESH----------------QILRVKNAM-DFSAPDYNVEPAV--GSGERCLPGDEA 324 (482)
Q Consensus 264 ~~~~~~p~giavd~~~g~lyVaD~~n~----------------~I~~~~~~~-~~~~~~g~~~~va--G~g~~~~~g~~~ 324 (482)
+..+..|.+|++.|..+++|++.+.|. +|+|+-... +..+...++++++ |.+..-.
T Consensus 413 AT~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~----- 487 (616)
T COG3211 413 ATPMDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLE----- 487 (616)
T ss_pred CccccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccc-----
Confidence 456889999999998899999998776 567766432 2222333555554 3322110
Q ss_pred ccCCCccccccccCCcceEEEeCCCcEEEEECC
Q psy8782 325 HCGDGAPARDAKLAYPKGVAVSADNILYFADGT 357 (482)
Q Consensus 325 ~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~~ 357 (482)
.+....-....|+.|.+|+||+.|+|||+.-+
T Consensus 488 -~~~~~~~~~~~f~~PDnl~fD~~GrLWi~TDg 519 (616)
T COG3211 488 -GGASANINANWFNSPDNLAFDPWGRLWIQTDG 519 (616)
T ss_pred -cccccCcccccccCCCceEECCCCCEEEEecC
Confidence 00111112256999999999999999997543
No 56
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=96.20 E-value=0.49 Score=47.62 Aligned_cols=32 Identities=38% Similarity=0.595 Sum_probs=28.2
Q ss_pred CceEEEEcCCCcEEEEeC--------CcEEEEcCCCeEEE
Q psy8782 121 APVALATAPDGSLFVGDF--------NLIRRIMTDGTVRT 152 (482)
Q Consensus 121 ~P~glavd~~G~lyvaD~--------~~Irki~~~G~v~t 152 (482)
-|.+|++.++|.+||++. ++|++++.+|++..
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~ 125 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLDGRVIR 125 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCCCcccc
Confidence 899999989999999995 58999999998754
No 57
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=96.18 E-value=0.06 Score=57.63 Aligned_cols=65 Identities=25% Similarity=0.345 Sum_probs=40.7
Q ss_pred ceeecCCccEEEEcCCCCEEEEEC---C--cEEEEcCCCeEEEEEeec-------------------cCCCCceeeEEEe
Q psy8782 221 PKQRLLAPVALATAPDGSLFVGDF---N--LIRRIMTDGTVRTVVRLN-------------------VTRVAYRYHIAYS 276 (482)
Q Consensus 221 ~~~~l~~P~giavd~~G~lyv~D~---~--~I~~i~~~G~v~~~~g~~-------------------~~~~~~p~giavd 276 (482)
....|..|..|+++++|+|||+.- + .+.-..++|.+..+.... ...-....|++++
T Consensus 431 ~~~~f~sPDNL~~d~~G~LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~~~~~~~~~g~~~rf~~~P~gaE~tG~~fs 510 (524)
T PF05787_consen 431 DDNGFASPDNLAFDPDGNLWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNNVWAYDPDTGELKRFLVGPNGAEITGPCFS 510 (524)
T ss_pred cCCCcCCCCceEECCCCCEEEEeCCCCCCcccccccccCceeeeeecccceeeeccccccceeeeccCCCCcccccceEC
Confidence 456788999999999999999875 2 244455666554442110 0111234577888
Q ss_pred CCCCeEEEE
Q psy8782 277 PLDGTLYIS 285 (482)
Q Consensus 277 ~~~g~lyVa 285 (482)
|+...|||.
T Consensus 511 pDg~tlFvn 519 (524)
T PF05787_consen 511 PDGRTLFVN 519 (524)
T ss_pred CCCCEEEEE
Confidence 855567764
No 58
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.16 E-value=1.5 Score=43.12 Aligned_cols=111 Identities=18% Similarity=0.196 Sum_probs=69.8
Q ss_pred EEEEcC---CCCEEEEEC--CcEEEEcCCCeEEEEEeec-c---CCCCceeeEEEeCCCCeEEEEeC-------------
Q psy8782 230 ALATAP---DGSLFVGDF--NLIRRIMTDGTVRTVVRLN-V---TRVAYRYHIAYSPLDGTLYISDP------------- 287 (482)
Q Consensus 230 giavd~---~G~lyv~D~--~~I~~i~~~G~v~~~~g~~-~---~~~~~p~giavd~~~g~lyVaD~------------- 287 (482)
|+|+.. ...||.+|+ ++|.+++.+-+..++.+.- . ..--.|.+|.-- ++.|||+-.
T Consensus 142 GLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqni--g~~lyVtYA~qd~~~~d~v~G~ 219 (336)
T TIGR03118 142 GLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNL--GGTLYVTYAQQDADRNDEVAGA 219 (336)
T ss_pred eeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCCCCCCCCCcceEEE--CCeEEEEEEecCCcccccccCC
Confidence 566553 358999999 6899997655443332221 0 111247777664 789999842
Q ss_pred CCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeC------CCcEEEEECCC--E
Q psy8782 288 ESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSA------DNILYFADGTN--I 359 (482)
Q Consensus 288 ~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~------~G~lyvaD~~n--I 359 (482)
+.+.|-.++ .+|+..... +....|+.|+|||+.| .|.|.|-..+. |
T Consensus 220 G~G~VdvFd-------~~G~l~~r~-------------------as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~I 273 (336)
T TIGR03118 220 GLGYVNVFT-------LNGQLLRRV-------------------ASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTI 273 (336)
T ss_pred CcceEEEEc-------CCCcEEEEe-------------------ccCCcccCCceeeeChhhhCCCCCCeEEeecCCcee
Confidence 223455555 455533322 2234599999999976 56899988765 8
Q ss_pred EEEcCC-CcE
Q psy8782 360 RMVDRD-GIV 368 (482)
Q Consensus 360 r~i~~~-G~i 368 (482)
-.+|++ |..
T Consensus 274 naFD~~sG~~ 283 (336)
T TIGR03118 274 NAYDPQSGAQ 283 (336)
T ss_pred EEecCCCCce
Confidence 888863 653
No 59
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=96.13 E-value=1.2 Score=41.67 Aligned_cols=186 Identities=20% Similarity=0.243 Sum_probs=100.4
Q ss_pred CceEEEEcCCCcEEEEeC--CcEEEEcCC-CeE-EEEEeeCCCcccCCCccccccccccCC-ceEEEecCCCeEEEEcCC
Q psy8782 121 APVALATAPDGSLFVGDF--NLIRRIMTD-GTV-RTVVRLKNQKFEKFPKILTSCFLSLSP-SGILQKGDGSNIYLKNKP 195 (482)
Q Consensus 121 ~P~glavd~~G~lyvaD~--~~Irki~~~-G~v-~ti~g~g~~~~~~~~~~~~~~~~~~~P-~gi~~~~~g~~lyi~d~~ 195 (482)
....+++.++++++++-. +.|+.++.+ +.. ..+.+. ..+ ..+.+.++++.++++..+
T Consensus 11 ~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~------------------~~~i~~~~~~~~~~~l~~~~~~ 72 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGH------------------TGPVRDVAASADGTYLASGSSD 72 (289)
T ss_pred CEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecC------------------CcceeEEEECCCCCEEEEEcCC
Confidence 356778888876555443 566666543 222 121111 011 245555555556655555
Q ss_pred CeEEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC--CcEEEEcCC-CeEEEEEeeccCCCCceee
Q psy8782 196 RIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF--NLIRRIMTD-GTVRTVVRLNVTRVAYRYH 272 (482)
Q Consensus 196 ~~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~--~~I~~i~~~-G~v~~~~g~~~~~~~~p~g 272 (482)
+.+..+.-........ ....-..+..+++.+++.++++.. +.|+.++.. ++....+. ........
T Consensus 73 ~~i~i~~~~~~~~~~~---------~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~i~~ 140 (289)
T cd00200 73 KTIRLWDLETGECVRT---------LTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR---GHTDWVNS 140 (289)
T ss_pred CeEEEEEcCcccceEE---------EeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec---cCCCcEEE
Confidence 5555443321100000 001112466788888887777766 688888865 55544432 22235688
Q ss_pred EEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCc-EEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCC-c
Q psy8782 273 IAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYN-VEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADN-I 350 (482)
Q Consensus 273 iavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~-~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G-~ 350 (482)
++++| ++.++++-..++.|+.++.. .+. +..+.. .-.....+++.+++ .
T Consensus 141 ~~~~~-~~~~l~~~~~~~~i~i~d~~------~~~~~~~~~~----------------------~~~~i~~~~~~~~~~~ 191 (289)
T cd00200 141 VAFSP-DGTFVASSSQDGTIKLWDLR------TGKCVATLTG----------------------HTGEVNSVAFSPDGEK 191 (289)
T ss_pred EEEcC-cCCEEEEEcCCCcEEEEEcc------ccccceeEec----------------------CccccceEEECCCcCE
Confidence 99998 56666666567788888742 222 111110 01245678888888 4
Q ss_pred EEEEECCC-EEEEcCC
Q psy8782 351 LYFADGTN-IRMVDRD 365 (482)
Q Consensus 351 lyvaD~~n-Ir~i~~~ 365 (482)
|+++...+ |++++..
T Consensus 192 l~~~~~~~~i~i~d~~ 207 (289)
T cd00200 192 LLSSSSDGTIKLWDLS 207 (289)
T ss_pred EEEecCCCcEEEEECC
Confidence 55555444 8877754
No 60
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=96.00 E-value=1.4 Score=41.23 Aligned_cols=147 Identities=20% Similarity=0.165 Sum_probs=81.6
Q ss_pred CceEEEEcCCCcEEEEeC--CcEEEEcCC-CeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCCCe
Q psy8782 121 APVALATAPDGSLFVGDF--NLIRRIMTD-GTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKPRI 197 (482)
Q Consensus 121 ~P~glavd~~G~lyvaD~--~~Irki~~~-G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~~~ 197 (482)
.+..+++.+++.++++.. +.|+.++.. ++........ ......+.+.+++..++....++.
T Consensus 95 ~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~----------------~~~i~~~~~~~~~~~l~~~~~~~~ 158 (289)
T cd00200 95 YVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGH----------------TDWVNSVAFSPDGTFVASSSQDGT 158 (289)
T ss_pred cEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccC----------------CCcEEEEEEcCcCCEEEEEcCCCc
Confidence 467788888877777665 677777764 4433322210 011244455554433333333444
Q ss_pred EEEEcCC-CccccCCCcCCCCCCCceeecCCccEEEEcCCC-CEEEEEC-CcEEEEcCC-CeEEEEEeeccCCCCceeeE
Q psy8782 198 IKTTLGD-GHQRPLDCKDCNGEAGPKQRLLAPVALATAPDG-SLFVGDF-NLIRRIMTD-GTVRTVVRLNVTRVAYRYHI 273 (482)
Q Consensus 198 i~~~~g~-G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G-~lyv~D~-~~I~~i~~~-G~v~~~~g~~~~~~~~p~gi 273 (482)
+..+.-. ++.... ....-.....+++.+++ .|+++.. +.|+.++.. ++....+. ........+
T Consensus 159 i~i~d~~~~~~~~~----------~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~---~~~~~i~~~ 225 (289)
T cd00200 159 IKLWDLRTGKCVAT----------LTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLR---GHENGVNSV 225 (289)
T ss_pred EEEEEcccccccee----------EecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchh---hcCCceEEE
Confidence 4443221 111100 00111245678899988 5656655 788888854 44443331 122356789
Q ss_pred EEeCCCCeEEEEeCCCCEEEEEec
Q psy8782 274 AYSPLDGTLYISDPESHQILRVKN 297 (482)
Q Consensus 274 avd~~~g~lyVaD~~n~~I~~~~~ 297 (482)
++++ ++.++++....+.|+.++.
T Consensus 226 ~~~~-~~~~~~~~~~~~~i~i~~~ 248 (289)
T cd00200 226 AFSP-DGYLLASGSEDGTIRVWDL 248 (289)
T ss_pred EEcC-CCcEEEEEcCCCcEEEEEc
Confidence 9998 6888887777788888874
No 61
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=95.91 E-value=2 Score=42.48 Aligned_cols=151 Identities=18% Similarity=0.204 Sum_probs=88.3
Q ss_pred EEcCCCc-EEEEeC------CcEEEEcCCCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCC---
Q psy8782 126 ATAPDGS-LFVGDF------NLIRRIMTDGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKP--- 195 (482)
Q Consensus 126 avd~~G~-lyvaD~------~~Irki~~~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~--- 195 (482)
++.+||. ||.++. .+|-..+.......+..-...+ ..|.-+.+.+|+..|.|++..
T Consensus 57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~G--------------IGPHel~l~pDG~tLvVANGGI~T 122 (305)
T PF07433_consen 57 VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHG--------------IGPHELLLMPDGETLVVANGGIET 122 (305)
T ss_pred EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCC--------------cChhhEEEcCCCCEEEEEcCCCcc
Confidence 4567887 666664 4666667664444433322222 468889999999899998631
Q ss_pred ----C-----------eEEEE-cCCCccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC---------CcEEEE
Q psy8782 196 ----R-----------IIKTT-LGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF---------NLIRRI 250 (482)
Q Consensus 196 ----~-----------~i~~~-~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~---------~~I~~i 250 (482)
+ .+..+ +.+|+..--. .....-.-.+-.-|+++++|.++++.- -.|..+
T Consensus 123 hpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~------~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~ 196 (305)
T PF07433_consen 123 HPDSGRAKLNLDTMQPSLVYLDARSGALLEQV------ELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALH 196 (305)
T ss_pred CcccCceecChhhcCCceEEEecCCCceeeee------ecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEE
Confidence 1 11222 4444432000 000011223567899999999999875 134455
Q ss_pred cCCCeEEEEEeecc---CCC-CceeeEEEeCCCCeEEEEeCCCCEEEEEec
Q psy8782 251 MTDGTVRTVVRLNV---TRV-AYRYHIAYSPLDGTLYISDPESHQILRVKN 297 (482)
Q Consensus 251 ~~~G~v~~~~g~~~---~~~-~~p~giavd~~~g~lyVaD~~n~~I~~~~~ 297 (482)
..++.+.. +.... ..| .+--.||++++.+.+.++-+..+++..++.
T Consensus 197 ~~g~~~~~-~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~ 246 (305)
T PF07433_consen 197 RRGGALRL-LPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDA 246 (305)
T ss_pred cCCCccee-ccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEEC
Confidence 54444322 22111 112 456789999844578899999999999985
No 62
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=95.91 E-value=2.4 Score=43.36 Aligned_cols=157 Identities=20% Similarity=0.261 Sum_probs=78.3
Q ss_pred eecCCccEEEEc--C-CCCEEE--EEC-Cc--EEEEc--CCCeE----EEEEeeccCCCCceeeEEEeCCCCeEEEEeCC
Q psy8782 223 QRLLAPVALATA--P-DGSLFV--GDF-NL--IRRIM--TDGTV----RTVVRLNVTRVAYRYHIAYSPLDGTLYISDPE 288 (482)
Q Consensus 223 ~~l~~P~giavd--~-~G~lyv--~D~-~~--I~~i~--~~G~v----~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~ 288 (482)
..+..|.|+|.- + +|.+|+ .+. ++ .+++. .+|.+ ++-++. ...|.|+++|...+.|||++..
T Consensus 153 ~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~----~sQ~EGCVVDDe~g~LYvgEE~ 228 (381)
T PF02333_consen 153 TDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV----GSQPEGCVVDDETGRLYVGEED 228 (381)
T ss_dssp -SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-----SS-EEEEEEETTTTEEEEEETT
T ss_pred cccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC----CCcceEEEEecccCCEEEecCc
Confidence 456679999984 3 576654 444 33 33333 35544 333332 3479999999988999999985
Q ss_pred CCEEEEEecCCccCCCCC-c-EEEEecCCcccCCCCCCccCCCccccccccCCcceEEEe----CCCcEEEEECCC--EE
Q psy8782 289 SHQILRVKNAMDFSAPDY-N-VEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVS----ADNILYFADGTN--IR 360 (482)
Q Consensus 289 n~~I~~~~~~~~~~~~~g-~-~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd----~~G~lyvaD~~n--Ir 360 (482)
.-|||+... |++ . -+.++-. .+++ ...-..||++- ..|.|.+++.++ ..
T Consensus 229 -~GIW~y~Ae-----p~~~~~~~~v~~~-----------~g~~------l~aDvEGlaly~~~~g~gYLivSsQG~~sf~ 285 (381)
T PF02333_consen 229 -VGIWRYDAE-----PEGGNDRTLVASA-----------DGDG------LVADVEGLALYYGSDGKGYLIVSSQGDNSFA 285 (381)
T ss_dssp -TEEEEEESS-----CCC-S--EEEEEB-----------SSSS------B-S-EEEEEEEE-CCC-EEEEEEEGGGTEEE
T ss_pred -cEEEEEecC-----CCCCCcceeeecc-----------cccc------cccCccceEEEecCCCCeEEEEEcCCCCeEE
Confidence 789999864 222 2 2222210 0111 12356788883 346799999887 55
Q ss_pred EEcCCC------cEEEEEcCCCCCCCCCcCCCCceEEeccccceeEEe--ecCcceEEecccCC
Q psy8782 361 MVDRDG------IVTTVIGNHMHKSHWKPIPCEGTLNIEEVSETMRDI--RHTTGWACYGTGDN 416 (482)
Q Consensus 361 ~i~~~G------~i~ti~G~~~~~~~~~~~~~dg~l~v~~~~~~~~~l--~~p~giav~~~g~n 416 (482)
+++..+ .+....+.+. -....+||.--++. .| .+|.|+.|-.+|.|
T Consensus 286 Vy~r~~~~~~~g~f~i~~~~~i----dg~~eTDG~~v~s~------~lG~~fp~Gl~VvqDg~n 339 (381)
T PF02333_consen 286 VYDREGPNAYVGSFRIGDGGGI----DGVSETDGIEVVSV------PLGPAFPQGLFVVQDGRN 339 (381)
T ss_dssp EEESSTT--EEEEEEEE--SSS--------S---EEEE-S--------STT-TT-EEEEEESSE
T ss_pred EEecCCCCcccceEEeccCCCc----cccccCCcceEEcC------cCCCCCCCceEEEecCCc
Confidence 666443 2333222111 11224666321111 12 36899988776654
No 63
>KOG1215|consensus
Probab=95.85 E-value=0.23 Score=56.94 Aligned_cols=184 Identities=24% Similarity=0.337 Sum_probs=125.1
Q ss_pred CCceEEEEcC-CCcEEEEeC--CcEEEEcCCCeEEE-EEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCC
Q psy8782 120 LAPVALATAP-DGSLFVGDF--NLIRRIMTDGTVRT-VVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKP 195 (482)
Q Consensus 120 ~~P~glavd~-~G~lyvaD~--~~Irki~~~G~v~t-i~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~ 195 (482)
..+..+.++. ++.+|-+|. .+|-+...++.... +.+.+ ...|.++++|.-++++|.+|..
T Consensus 437 ~~~~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~~~~~~~~g----------------~~~~~~lavD~~~~~~y~tDe~ 500 (877)
T KOG1215|consen 437 KNAVALDFDVLNNRIYWADLSDEKICRASQDGSSECELCGDG----------------LCIPEGLAVDWIGDNIYWTDEG 500 (877)
T ss_pred ccceEEEEEecCCEEEEEeccCCeEeeeccCCCccceEeccC----------------ccccCcEEEEeccCCceecccC
Confidence 3445555554 456888887 67777766655433 23332 2458999999999999999974
Q ss_pred C-eEEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcC-CCCEEEEECC---cEEEEcCCCeEEEEEeeccCCCCce
Q psy8782 196 R-IIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAP-DGSLFVGDFN---LIRRIMTDGTVRTVVRLNVTRVAYR 270 (482)
Q Consensus 196 ~-~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~-~G~lyv~D~~---~I~~i~~~G~v~~~~g~~~~~~~~p 270 (482)
. .+....-+|...+.. ....+..|..++++| .|.+|.+|+. +|.|-..+|.-.+.... ....+|
T Consensus 501 ~~~i~v~~~~g~~~~vl---------~~~~l~~~r~~~v~p~~g~~~wtd~~~~~~i~ra~~dg~~~~~l~~--~~~~~p 569 (877)
T KOG1215|consen 501 NCLIEVADLDGSSRKVL---------VSKDLDLPRSIAVDPEKGLMFWTDWGQPPRIERASLDGSERAVLVT--NGILWP 569 (877)
T ss_pred CceeEEEEccCCceeEE---------EecCCCCccceeeccccCeeEEecCCCCchhhhhcCCCCCceEEEe--CCccCC
Confidence 3 333222222221110 223447899999999 6899999993 67777888875555443 237799
Q ss_pred eeEEEeCCCCeEEEEeCCCC-EEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCC
Q psy8782 271 YHIAYSPLDGTLYISDPESH-QILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADN 349 (482)
Q Consensus 271 ~giavd~~~g~lyVaD~~n~-~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G 349 (482)
+++++|-.+..+|-+|...+ .|.+.+. +|....+. ....+.+|.++++- ..
T Consensus 570 ~glt~d~~~~~~yw~d~~~~~~i~~~~~-------~g~~r~~~--------------------~~~~~~~p~~~~~~-~~ 621 (877)
T KOG1215|consen 570 NGLTIDYETDRLYWADAKLDYTIESANM-------DGQNRRVV--------------------DSEDLPHPFGLSVF-ED 621 (877)
T ss_pred CcceEEeecceeEEEcccCCcceeeeec-------CCCceEEe--------------------ccccCCCceEEEEe-cc
Confidence 99999987889999999888 7888873 44322211 12347789999995 67
Q ss_pred cEEEEECCC
Q psy8782 350 ILYFADGTN 358 (482)
Q Consensus 350 ~lyvaD~~n 358 (482)
.+|..|..+
T Consensus 622 ~iyw~d~~~ 630 (877)
T KOG1215|consen 622 YIYWTDWSN 630 (877)
T ss_pred eeEEeeccc
Confidence 899999877
No 64
>KOG0291|consensus
Probab=95.78 E-value=1.5 Score=47.76 Aligned_cols=75 Identities=19% Similarity=0.160 Sum_probs=57.0
Q ss_pred EEEEcCCCCEEEEEC---CcEEEEc-CCCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCC
Q psy8782 230 ALATAPDGSLFVGDF---NLIRRIM-TDGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPD 305 (482)
Q Consensus 230 giavd~~G~lyv~D~---~~I~~i~-~~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~ 305 (482)
.+|+||.|.|.++-. -.|+.++ ..|++..++....+. -.+|+++| .+.+.++-+....|++++.-. ..
T Consensus 440 cvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgP---Vs~l~f~~-~~~~LaS~SWDkTVRiW~if~----s~ 511 (893)
T KOG0291|consen 440 CVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGP---VSGLSFSP-DGSLLASGSWDKTVRIWDIFS----SS 511 (893)
T ss_pred EEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCc---ceeeEEcc-ccCeEEeccccceEEEEEeec----cC
Confidence 689999999999887 3688887 678888776432221 35799999 888999999899999988532 56
Q ss_pred CcEEEEe
Q psy8782 306 YNVEPAV 312 (482)
Q Consensus 306 g~~~~va 312 (482)
|+++++.
T Consensus 512 ~~vEtl~ 518 (893)
T KOG0291|consen 512 GTVETLE 518 (893)
T ss_pred ceeeeEe
Confidence 6777765
No 65
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=95.67 E-value=3 Score=43.00 Aligned_cols=135 Identities=13% Similarity=0.152 Sum_probs=77.1
Q ss_pred CCCEEEEEC-CcEEEEcC-CCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEec
Q psy8782 236 DGSLFVGDF-NLIRRIMT-DGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVG 313 (482)
Q Consensus 236 ~G~lyv~D~-~~I~~i~~-~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG 313 (482)
++.||+++. +.++.+++ +|++.-.. .+..+..++++ ++.||+.+. +++++.++. .+|+..--.-
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~-----~~~~~~~~~~~--~~~vy~~~~-~g~l~ald~------~tG~~~W~~~ 321 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKR-----EYGSVNDFAVD--GGRIYLVDQ-NDRVYALDT------RGGVELWSQS 321 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEee-----cCCCccCcEEE--CCEEEEEcC-CCeEEEEEC------CCCcEEEccc
Confidence 578999887 78888884 57643221 12223345554 789999875 578999985 4554322110
Q ss_pred CCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEECCC-EEEEcC-CCcEEEEEcCCCCCCCCCcCCCCceEE
Q psy8782 314 SGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADGTN-IRMVDR-DGIVTTVIGNHMHKSHWKPIPCEGTLN 391 (482)
Q Consensus 314 ~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~~n-Ir~i~~-~G~i~ti~G~~~~~~~~~~~~~dg~l~ 391 (482)
. ..+ ..+..| ++ .+|.||+.+... +..+|+ +|++..-...........|+-.++.||
T Consensus 322 ~------------~~~-----~~~~sp---~v-~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~~~~~l~ 380 (394)
T PRK11138 322 D------------LLH-----RLLTAP---VL-YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVVADDKLL 380 (394)
T ss_pred c------------cCC-----CcccCC---EE-ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEEECCEEE
Confidence 0 000 112233 23 368899988765 888885 788654332221111224555677888
Q ss_pred eccccceeEEeecC
Q psy8782 392 IEEVSETMRDIRHT 405 (482)
Q Consensus 392 v~~~~~~~~~l~~p 405 (482)
+......+..|..|
T Consensus 381 v~t~~G~l~~~~~~ 394 (394)
T PRK11138 381 IQARDGTVYAITRP 394 (394)
T ss_pred EEeCCceEEEEeCC
Confidence 87655555555543
No 66
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=95.60 E-value=2.7 Score=41.64 Aligned_cols=190 Identities=13% Similarity=0.091 Sum_probs=102.7
Q ss_pred ccCCceEEEecCCCeEEEEcCCCeEEEEcCCCccccCCC-cCCCCC-CCce---eecCCccEEEEcCCCCEEEEEC--Cc
Q psy8782 174 SLSPSGILQKGDGSNIYLKNKPRIIKTTLGDGHQRPLDC-KDCNGE-AGPK---QRLLAPVALATAPDGSLFVGDF--NL 246 (482)
Q Consensus 174 ~~~P~gi~~~~~g~~lyi~d~~~~i~~~~g~G~~~~~~~-~~~~g~-~~~~---~~l~~P~giavd~~G~lyv~D~--~~ 246 (482)
+..|.|++..+ +.||++....++..-.......+... ..++.- .+.. ..-..-+.|++ .++.++|..+ ++
T Consensus 48 F~r~MGl~~~~--~~l~~~t~~qiw~f~~~~n~l~~~~~~~~~D~~yvPr~~~~TGdidiHdia~-~~~~l~fVNT~fSC 124 (335)
T TIGR03032 48 FPRPMGLAVSP--QSLTLGTRYQLWRFANVDNLLPAGQTHPGYDRLYVPRASYVTGDIDAHDLAL-GAGRLLFVNTLFSC 124 (335)
T ss_pred cCccceeeeeC--CeEEEEEcceeEEcccccccccccccCCCCCeEEeeeeeeeccCcchhheee-cCCcEEEEECccee
Confidence 45678887754 47888776655554211111100000 000000 0000 11123567888 5678888888 89
Q ss_pred EEEEcCCCeEEEEEeec------cCCCCceeeEEEeCCCCeEEEEeCCCC---EEEEEecCCccCCCCCcEEEEecCCcc
Q psy8782 247 IRRIMTDGTVRTVVRLN------VTRVAYRYHIAYSPLDGTLYISDPESH---QILRVKNAMDFSAPDYNVEPAVGSGER 317 (482)
Q Consensus 247 I~~i~~~G~v~~~~g~~------~~~~~~p~giavd~~~g~lyVaD~~n~---~I~~~~~~~~~~~~~g~~~~vaG~g~~ 317 (482)
+-.+++.-.+...+... ...=-|-+|+|+.. +.--||+--... .=+|=... ..|.+.-+. +++
T Consensus 125 Latl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~~~-g~p~yVTa~~~sD~~~gWR~~~~-----~gG~vidv~-s~e- 196 (335)
T TIGR03032 125 LATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMALDD-GEPRYVTALSQSDVADGWREGRR-----DGGCVIDIP-SGE- 196 (335)
T ss_pred EEEECCCCccccccCCccccccCccCceeecceeeeC-CeEEEEEEeeccCCccccccccc-----CCeEEEEeC-CCC-
Confidence 99999988777665421 11113568999974 446777642211 11111100 011111111 110
Q ss_pred cCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEECCC--EEEEcCC-CcEEEEEcCCCCCCCCCcCCCCceEEe
Q psy8782 318 CLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADGTN--IRMVDRD-GIVTTVIGNHMHKSHWKPIPCEGTLNI 392 (482)
Q Consensus 318 ~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~~n--Ir~i~~~-G~i~ti~G~~~~~~~~~~~~~dg~l~v 392 (482)
..-+| |..|++--.. +|.|||+|++. +.++|++ |....++-..+.. +.+...|.+.+
T Consensus 197 -------vl~~G-------LsmPhSPRWh-dgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~---rGL~f~G~llv 256 (335)
T TIGR03032 197 -------VVASG-------LSMPHSPRWY-QGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFT---RGLAFAGDFAF 256 (335)
T ss_pred -------EEEcC-------ccCCcCCcEe-CCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCC---cccceeCCEEE
Confidence 01123 7788887775 89999999987 9999996 9999888666542 23444475554
No 67
>KOG1446|consensus
Probab=95.41 E-value=2.9 Score=40.88 Aligned_cols=130 Identities=14% Similarity=0.180 Sum_probs=71.8
Q ss_pred cEEEEc-CCCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCC
Q psy8782 246 LIRRIM-TDGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEA 324 (482)
Q Consensus 246 ~I~~i~-~~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~ 324 (482)
.||-++ .+.+.++.+.... ..-..|.++| .++.+++-.....|+.++... -+ |
T Consensus 81 tIryLsl~dNkylRYF~GH~---~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~------~~----------c------ 134 (311)
T KOG1446|consen 81 TIRYLSLHDNKYLRYFPGHK---KRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRV------KK----------C------ 134 (311)
T ss_pred ceEEEEeecCceEEEcCCCC---ceEEEEEecC-CCCeEEecccCCeEEeeEecC------CC----------C------
Confidence 455554 3444555543222 2346799999 669999999999999998521 11 1
Q ss_pred ccCCCccccccccCCcceEEEeCCCcEEEEECCC--EEEEcC----CCcEEEEEcCCCCCCCC--CcCCCCc-eEEeccc
Q psy8782 325 HCGDGAPARDAKLAYPKGVAVSADNILYFADGTN--IRMVDR----DGIVTTVIGNHMHKSHW--KPIPCEG-TLNIEEV 395 (482)
Q Consensus 325 ~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~~n--Ir~i~~----~G~i~ti~G~~~~~~~~--~~~~~dg-~l~v~~~ 395 (482)
.| .-.+..+--.|+||+|.++.+-.+. |+..|. .|=.+++.=.......| ..++.|| .|.++..
T Consensus 135 ---qg----~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~ 207 (311)
T KOG1446|consen 135 ---QG----LLNLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN 207 (311)
T ss_pred ---ce----EEecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC
Confidence 01 0113345558999999888766554 666553 34344443221222222 4456777 4555554
Q ss_pred cceeEEeecCcce
Q psy8782 396 SETMRDIRHTTGW 408 (482)
Q Consensus 396 ~~~~~~l~~p~gi 408 (482)
...+.-+..+.|.
T Consensus 208 ~s~~~~lDAf~G~ 220 (311)
T KOG1446|consen 208 ASFIYLLDAFDGT 220 (311)
T ss_pred CCcEEEEEccCCc
Confidence 4444445555444
No 68
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.28 E-value=0.55 Score=45.42 Aligned_cols=105 Identities=19% Similarity=0.252 Sum_probs=71.9
Q ss_pred ccEEEEcCCCCEEEEEC----CcEEEEcC-CCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccC
Q psy8782 228 PVALATAPDGSLFVGDF----NLIRRIMT-DGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFS 302 (482)
Q Consensus 228 P~giavd~~G~lyv~D~----~~I~~i~~-~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~ 302 (482)
-.|+.+..+|.||.+.. .+|+++++ +|++......... .+-.||++- ++.||.--..++...+++..
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~--~FgEGit~~--~d~l~qLTWk~~~~f~yd~~---- 118 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPR--YFGEGITIL--GDKLYQLTWKEGTGFVYDPN---- 118 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT----EEEEEEE--TTEEEEEESSSSEEEEEETT----
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcc--ccceeEEEE--CCEEEEEEecCCeEEEEccc----
Confidence 46899977899999998 48999995 4777665544222 256799997 78999999999999999952
Q ss_pred CCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEECCC-EEEEcCC
Q psy8782 303 APDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADGTN-IRMVDRD 365 (482)
Q Consensus 303 ~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~~n-Ir~i~~~ 365 (482)
+.+.+ ++. .+.++| +||+.| ...||++|..+ ++.+||.
T Consensus 119 ----tl~~~-~~~--------~y~~EG-----------WGLt~d-g~~Li~SDGS~~L~~~dP~ 157 (264)
T PF05096_consen 119 ----TLKKI-GTF--------PYPGEG-----------WGLTSD-GKRLIMSDGSSRLYFLDPE 157 (264)
T ss_dssp ----TTEEE-EEE--------E-SSS-------------EEEEC-SSCEEEE-SSSEEEEE-TT
T ss_pred ----cceEE-EEE--------ecCCcc-----------eEEEcC-CCEEEEECCccceEEECCc
Confidence 12221 111 122344 899977 45799999988 9999984
No 69
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=95.11 E-value=0.056 Score=36.25 Aligned_cols=32 Identities=19% Similarity=0.119 Sum_probs=29.2
Q ss_pred CCCceeeEEEeCCCCeEEEEeCCCCEEEEEec
Q psy8782 266 RVAYRYHIAYSPLDGTLYISDPESHQILRVKN 297 (482)
Q Consensus 266 ~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~ 297 (482)
.+..|.+||+|+..+.||.+|...+.|.+.+.
T Consensus 7 ~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~ 38 (43)
T smart00135 7 GLGHPNGLAVDWIEGRLYWTDWGLDVIEVANL 38 (43)
T ss_pred CCCCcCEEEEeecCCEEEEEeCCCCEEEEEeC
Confidence 57789999999988999999999999999984
No 70
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=94.68 E-value=3.3 Score=41.65 Aligned_cols=112 Identities=24% Similarity=0.245 Sum_probs=68.9
Q ss_pred CccEEEEcCCCCEEEEEC--------CcEEEEcCCCeEEEEEeecc---------C---CCCceeeEEEeCCCCe-EEEE
Q psy8782 227 APVALATAPDGSLFVGDF--------NLIRRIMTDGTVRTVVRLNV---------T---RVAYRYHIAYSPLDGT-LYIS 285 (482)
Q Consensus 227 ~P~giavd~~G~lyv~D~--------~~I~~i~~~G~v~~~~g~~~---------~---~~~~p~giavd~~~g~-lyVa 285 (482)
.|.+|++.++|.+||++. ++|++++++|++...+.... . .-....+||++| +|. ||++
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~-dG~~l~~~ 164 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP-DGRTLFAA 164 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECC-CCCEEEEE
Confidence 788999988999999997 36999999998865442211 1 112456899999 655 8887
Q ss_pred eCCC---------------CEEEEEecCCccCCCCCc-EEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCC
Q psy8782 286 DPES---------------HQILRVKNAMDFSAPDYN-VEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADN 349 (482)
Q Consensus 286 D~~n---------------~~I~~~~~~~~~~~~~g~-~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G 349 (482)
-... .||++++... .+. ...++ +.-+. +.....-..+..|+..+++
T Consensus 165 ~E~~l~~d~~~~~~~~~~~~ri~~~d~~~-----~~~~~~~~~------------y~ld~-~~~~~~~~~isd~~al~d~ 226 (326)
T PF13449_consen 165 MESPLKQDGPRANPDNGSPLRILRYDPKT-----PGEPVAEYA------------YPLDP-PPTAPGDNGISDIAALPDG 226 (326)
T ss_pred ECccccCCCcccccccCceEEEEEecCCC-----CCccceEEE------------EeCCc-cccccCCCCceeEEEECCC
Confidence 5432 4566666321 121 01100 11110 0000134567788888899
Q ss_pred cEEEEECC
Q psy8782 350 ILYFADGT 357 (482)
Q Consensus 350 ~lyvaD~~ 357 (482)
.++|.+..
T Consensus 227 ~lLvLER~ 234 (326)
T PF13449_consen 227 RLLVLERD 234 (326)
T ss_pred cEEEEEcc
Confidence 99999875
No 71
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=94.40 E-value=0.21 Score=33.90 Aligned_cols=40 Identities=28% Similarity=0.403 Sum_probs=30.4
Q ss_pred CeEEEEeCCCC-EEEEEecCCccCCCCCc-EEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeC
Q psy8782 280 GTLYISDPESH-QILRVKNAMDFSAPDYN-VEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSA 347 (482)
Q Consensus 280 g~lyVaD~~n~-~I~~~~~~~~~~~~~g~-~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~ 347 (482)
+.||.+|...+ +|.+.+. +|. ..+++- ..|..|.|||+|+
T Consensus 1 ~~iYWtD~~~~~~I~~a~~-------dGs~~~~vi~---------------------~~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANL-------DGSNRRTVIS---------------------DDLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETTTTEEEEEEET-------TSTSEEEEEE---------------------SSTSSEEEEEEET
T ss_pred CEEEEEECCCCcEEEEEEC-------CCCCeEEEEE---------------------CCCCCcCEEEECC
Confidence 57999999999 9999985 454 444442 2288999999984
No 72
>PRK02888 nitrous-oxide reductase; Validated
Probab=94.29 E-value=1.1 Score=48.49 Aligned_cols=144 Identities=10% Similarity=-0.046 Sum_probs=80.9
Q ss_pred CCceEEEecCCCeEEEEcCC----CeEEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcCCCC-EEEEECCcEEEE
Q psy8782 176 SPSGILQKGDGSNIYLKNKP----RIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGS-LFVGDFNLIRRI 250 (482)
Q Consensus 176 ~P~gi~~~~~g~~lyi~d~~----~~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~-lyv~D~~~I~~i 250 (482)
+|..+.+++++..+|++..+ ..+..+.. +.. .....|+.+...+.-++|. .|| ..++|..+
T Consensus 236 npd~v~~spdGk~afvTsyNsE~G~tl~em~a-~e~------------d~~vvfni~~iea~vkdGK~~~V-~gn~V~VI 301 (635)
T PRK02888 236 NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMA-AER------------DWVVVFNIARIEEAVKAGKFKTI-GGSKVPVV 301 (635)
T ss_pred CcccceECCCCCEEEEeccCcccCcceeeecc-ccC------------ceEEEEchHHHHHhhhCCCEEEE-CCCEEEEE
Confidence 57888889999899988532 12222211 000 0112222222223334553 444 34778888
Q ss_pred cCCC------eEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCc---EEEEecCCcccCCC
Q psy8782 251 MTDG------TVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYN---VEPAVGSGERCLPG 321 (482)
Q Consensus 251 ~~~G------~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~---~~~vaG~g~~~~~g 321 (482)
|..- .++..+- -...|.|++++|+...+|++....+.|-.|+...--..-++. -.++++...
T Consensus 302 D~~t~~~~~~~v~~yIP----VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve----- 372 (635)
T PRK02888 302 DGRKAANAGSALTRYVP----VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE----- 372 (635)
T ss_pred ECCccccCCcceEEEEE----CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec-----
Confidence 7442 3444432 346899999999666899999999999999853210000000 112232211
Q ss_pred CCCccCCCccccccccCCcceEEEeCCCcEEEEEC
Q psy8782 322 DEAHCGDGAPARDAKLAYPKGVAVSADNILYFADG 356 (482)
Q Consensus 322 ~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~ 356 (482)
.| ..|...+||.+|+.|++=.
T Consensus 373 ----vG----------lGPLHTaFDg~G~aytslf 393 (635)
T PRK02888 373 ----LG----------LGPLHTAFDGRGNAYTTLF 393 (635)
T ss_pred ----cC----------CCcceEEECCCCCEEEeEe
Confidence 12 3488899999999887643
No 73
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=93.95 E-value=5.7 Score=42.27 Aligned_cols=66 Identities=14% Similarity=0.175 Sum_probs=44.3
Q ss_pred CcEEEEcCCCeEEEEEeecc------------------------CCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCc
Q psy8782 245 NLIRRIMTDGTVRTVVRLNV------------------------TRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMD 300 (482)
Q Consensus 245 ~~I~~i~~~G~v~~~~g~~~------------------------~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~ 300 (482)
..|..++++|+++..+-... ..-.|-++|..++.++.|+|+-+..+.|.+|+.
T Consensus 224 D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~--- 300 (477)
T PF05935_consen 224 DVIVEVDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDY--- 300 (477)
T ss_dssp -EEEEE-TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE----
T ss_pred CEEEEECCCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEEC---
Confidence 35778888888877765320 012366789999988999999999999999995
Q ss_pred cCCCCCcEEEEecCCc
Q psy8782 301 FSAPDYNVEPAVGSGE 316 (482)
Q Consensus 301 ~~~~~g~~~~vaG~g~ 316 (482)
.++.+.-++|...
T Consensus 301 ---~t~~i~Wilg~~~ 313 (477)
T PF05935_consen 301 ---RTGKIKWILGPPG 313 (477)
T ss_dssp ---TTS-EEEEES-ST
T ss_pred ---CCCcEEEEeCCCC
Confidence 5888998888643
No 74
>KOG0263|consensus
Probab=93.85 E-value=3.3 Score=45.05 Aligned_cols=108 Identities=17% Similarity=0.149 Sum_probs=72.4
Q ss_pred cCCccEEEEcCCCCEEEEEC--CcEEEEc-CCCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCcc
Q psy8782 225 LLAPVALATAPDGSLFVGDF--NLIRRIM-TDGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDF 301 (482)
Q Consensus 225 l~~P~giavd~~G~lyv~D~--~~I~~i~-~~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~ 301 (482)
+..-..+.++|+.+...+.+ ..||.++ ..|..++++-. .-..-..|+++| .|.-.++-...+.|..++.
T Consensus 535 lsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~G---H~~~V~al~~Sp-~Gr~LaSg~ed~~I~iWDl---- 606 (707)
T KOG0263|consen 535 LSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTG---HKGPVTALAFSP-CGRYLASGDEDGLIKIWDL---- 606 (707)
T ss_pred ccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecC---CCCceEEEEEcC-CCceEeecccCCcEEEEEc----
Confidence 34445688899776544444 6888887 67888887732 223346799999 8887777777888988885
Q ss_pred CCCCCc-EEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEECCC--EEEEcC
Q psy8782 302 SAPDYN-VEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADGTN--IRMVDR 364 (482)
Q Consensus 302 ~~~~g~-~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~~n--Ir~i~~ 364 (482)
..|. +..+.|. -..-..|.|..+|+++++++.. ||.-|-
T Consensus 607 --~~~~~v~~l~~H----------------------t~ti~SlsFS~dg~vLasgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 607 --ANGSLVKQLKGH----------------------TGTIYSLSFSRDGNVLASGGADNSVRLWDL 648 (707)
T ss_pred --CCCcchhhhhcc----------------------cCceeEEEEecCCCEEEecCCCCeEEEEEc
Confidence 3333 1122221 1123578899999999998865 887763
No 75
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=93.79 E-value=5.2 Score=40.96 Aligned_cols=72 Identities=22% Similarity=0.204 Sum_probs=48.1
Q ss_pred CccEEEEcC-CCCEEEEEC-CcEEEEcC--CC-eEEEEEee-ccCCC-CceeeEEEeC---CCCeEEEEeCCCCEEEEEe
Q psy8782 227 APVALATAP-DGSLFVGDF-NLIRRIMT--DG-TVRTVVRL-NVTRV-AYRYHIAYSP---LDGTLYISDPESHQILRVK 296 (482)
Q Consensus 227 ~P~giavd~-~G~lyv~D~-~~I~~i~~--~G-~v~~~~g~-~~~~~-~~p~giavd~---~~g~lyVaD~~n~~I~~~~ 296 (482)
.|.|+++|. .|.||+++. .-|+++.. ++ ...+++.. ....+ .-..||++-. ..|.|.+++.+++....++
T Consensus 209 Q~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~ 288 (381)
T PF02333_consen 209 QPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYD 288 (381)
T ss_dssp -EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEE
T ss_pred cceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEe
Confidence 688999987 589999999 68999973 33 22233321 12223 3577898842 1468999999999998888
Q ss_pred cC
Q psy8782 297 NA 298 (482)
Q Consensus 297 ~~ 298 (482)
..
T Consensus 289 r~ 290 (381)
T PF02333_consen 289 RE 290 (381)
T ss_dssp SS
T ss_pred cC
Confidence 54
No 76
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=93.75 E-value=6 Score=37.04 Aligned_cols=111 Identities=14% Similarity=0.168 Sum_probs=69.2
Q ss_pred EEcCCCCEEEEEC-CcEEEEcC-CCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEE
Q psy8782 232 ATAPDGSLFVGDF-NLIRRIMT-DGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVE 309 (482)
Q Consensus 232 avd~~G~lyv~D~-~~I~~i~~-~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~ 309 (482)
++..++.||+++. +.++.++. +|++.-.... ...+..+ ..++ ++.+||....+ +|+.++. .+|++.
T Consensus 32 ~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~--~~~~--~~~v~v~~~~~-~l~~~d~------~tG~~~ 99 (238)
T PF13360_consen 32 AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGA--PVVD--GGRVYVGTSDG-SLYALDA------KTGKVL 99 (238)
T ss_dssp EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSG--EEEE--TTEEEEEETTS-EEEEEET------TTSCEE
T ss_pred EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccce--eeec--cccccccccee-eeEeccc------CCccee
Confidence 5555789999977 89999995 8987655443 2222222 2443 78999988544 9999995 577765
Q ss_pred EEe-cCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEEC-CCEEEEcC-CCcEEEE
Q psy8782 310 PAV-GSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADG-TNIRMVDR-DGIVTTV 371 (482)
Q Consensus 310 ~va-G~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~-~nIr~i~~-~G~i~ti 371 (482)
--. .... + .+.+..+...+++ .+.+|++.. +.|+.+|+ +|.+.--
T Consensus 100 W~~~~~~~-----------~-----~~~~~~~~~~~~~-~~~~~~~~~~g~l~~~d~~tG~~~w~ 147 (238)
T PF13360_consen 100 WSIYLTSS-----------P-----PAGVRSSSSPAVD-GDRLYVGTSSGKLVALDPKTGKLLWK 147 (238)
T ss_dssp EEEEE-SS-----------C-----TCSTB--SEEEEE-TTEEEEEETCSEEEEEETTTTEEEEE
T ss_pred eeeccccc-----------c-----ccccccccCceEe-cCEEEEEeccCcEEEEecCCCcEEEE
Confidence 432 1110 0 1114445566666 566888885 44999994 7887433
No 77
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=93.74 E-value=0.2 Score=34.02 Aligned_cols=38 Identities=29% Similarity=0.372 Sum_probs=30.1
Q ss_pred CCEEEEEC--C-cEEEEcCCCeE-EEEEeeccCCCCceeeEEEeC
Q psy8782 237 GSLFVGDF--N-LIRRIMTDGTV-RTVVRLNVTRVAYRYHIAYSP 277 (482)
Q Consensus 237 G~lyv~D~--~-~I~~i~~~G~v-~~~~g~~~~~~~~p~giavd~ 277 (482)
+.||.+|. + .|.+.+.+|.- .+++ ...+.+|.+||||+
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi---~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGSNRRTVI---SDDLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTSTSEEEEE---ESSTSSEEEEEEET
T ss_pred CEEEEEECCCCcEEEEEECCCCCeEEEE---ECCCCCcCEEEECC
Confidence 57999999 6 89999999864 4444 34588999999985
No 78
>KOG0266|consensus
Probab=93.60 E-value=10 Score=40.13 Aligned_cols=110 Identities=24% Similarity=0.299 Sum_probs=74.7
Q ss_pred CCccEEEEcCCCCEEEEEC--CcEEEEcC-C-CeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCcc
Q psy8782 226 LAPVALATAPDGSLFVGDF--NLIRRIMT-D-GTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDF 301 (482)
Q Consensus 226 ~~P~giavd~~G~lyv~D~--~~I~~i~~-~-G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~ 301 (482)
..-.++++.++|...++-. ..|+.++. + +.....+. +.....+.++++| .++++++-...+.|+.++.
T Consensus 204 ~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~---gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~---- 275 (456)
T KOG0266|consen 204 RGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLK---GHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDV---- 275 (456)
T ss_pred cceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEec---CCCCceEEEEecC-CCCEEEEecCCCcEEEEec----
Confidence 3456899999998776666 67777774 3 35544442 2334568999999 6699999999999999985
Q ss_pred CCCCCcE-EEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEECCC--EEEEcC-CCc
Q psy8782 302 SAPDYNV-EPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADGTN--IRMVDR-DGI 367 (482)
Q Consensus 302 ~~~~g~~-~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~~n--Ir~i~~-~G~ 367 (482)
..|+. ..+.+. -..-.++++.++|+++++-+.. ||+.|. .|.
T Consensus 276 --~~~~~~~~l~~h----------------------s~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~ 321 (456)
T KOG0266|consen 276 --RTGECVRKLKGH----------------------SDGISGLAFSPDGNLLVSASYDGTIRVWDLETGS 321 (456)
T ss_pred --cCCeEEEeeecc----------------------CCceEEEEECCCCCEEEEcCCCccEEEEECCCCc
Confidence 33442 222221 1123678999999987766533 999986 455
No 79
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=93.56 E-value=0.32 Score=38.77 Aligned_cols=34 Identities=26% Similarity=0.358 Sum_probs=29.7
Q ss_pred cCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEec
Q psy8782 264 VTRVAYRYHIAYSPLDGTLYISDPESHQILRVKN 297 (482)
Q Consensus 264 ~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~ 297 (482)
...+..|+||+++|+...|||++...+.|+.+..
T Consensus 50 a~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~ 83 (86)
T PF01731_consen 50 ASGFSFANGIAISPDKKYLYVASSLAHSIHVYKR 83 (86)
T ss_pred eccCCCCceEEEcCCCCEEEEEeccCCeEEEEEe
Confidence 4568899999999977899999999999998863
No 80
>KOG1274|consensus
Probab=93.53 E-value=15 Score=41.04 Aligned_cols=148 Identities=16% Similarity=0.166 Sum_probs=84.3
Q ss_pred ceEEEecCCCeEEEEcCCCeEEEEcCCCc-cccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC--CcEEEEc-CC
Q psy8782 178 SGILQKGDGSNIYLKNKPRIIKTTLGDGH-QRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF--NLIRRIM-TD 253 (482)
Q Consensus 178 ~gi~~~~~g~~lyi~d~~~~i~~~~g~G~-~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~--~~I~~i~-~~ 253 (482)
..+.|+++|+.|++++.++.|+.+...-. ..|-. ....=..-.+++.+. +.|++-+ +.|.++. ++
T Consensus 17 t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~t---------i~~~g~~v~~ia~~s--~~f~~~s~~~tv~~y~fps 85 (933)
T KOG1274|consen 17 TLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPET---------IDISGELVSSIACYS--NHFLTGSEQNTVLRYKFPS 85 (933)
T ss_pred EEEEEcCCCCEEEEecCCCceEEeecCCcccCCch---------hhccCceeEEEeecc--cceEEeeccceEEEeeCCC
Confidence 57889999999999999998887765432 11100 000001123455543 4555555 7788775 55
Q ss_pred CeEEEEEeeccCCCCce-eeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEE-EEecCCcccCCCCCCccCCCcc
Q psy8782 254 GTVRTVVRLNVTRVAYR-YHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVE-PAVGSGERCLPGDEAHCGDGAP 331 (482)
Q Consensus 254 G~v~~~~g~~~~~~~~p-~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~-~vaG~g~~~~~g~~~~~gdg~~ 331 (482)
+...+++ .+|..| ..++++. +|...++-...-.|..++.. +...+ ++-|. ++
T Consensus 86 ~~~~~iL----~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~------D~s~~~~lrgh-------------~a-- 139 (933)
T KOG1274|consen 86 GEEDTIL----ARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLD------DSSQEKVLRGH-------------DA-- 139 (933)
T ss_pred CCcccee----eeeeccceEEEEec-CCcEEEeecCceeEEEEecc------ccchheeeccc-------------CC--
Confidence 5544333 223333 5688887 88887777766677777642 33322 22221 11
Q ss_pred ccccccCCcceEEEeCCCcEEEEECCC--EEEEcC-CCcEE
Q psy8782 332 ARDAKLAYPKGVAVSADNILYFADGTN--IRMVDR-DGIVT 369 (482)
Q Consensus 332 a~~a~l~~P~giavd~~G~lyvaD~~n--Ir~i~~-~G~i~ 369 (482)
.-.+|.++|+|++..+-..+ +++++- +|+++
T Consensus 140 -------pVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~ 173 (933)
T KOG1274|consen 140 -------PVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILS 173 (933)
T ss_pred -------ceeeeeEcCCCCEEEEEecCceEEEEEcccchhh
Confidence 23578888988866544433 777763 56543
No 81
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=93.40 E-value=6.8 Score=36.63 Aligned_cols=190 Identities=17% Similarity=0.167 Sum_probs=98.1
Q ss_pred CCCeEEEEcCCCeEEEEc-CCCccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC-CcEEEEc-CCCeEEEEE-
Q psy8782 185 DGSNIYLKNKPRIIKTTL-GDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF-NLIRRIM-TDGTVRTVV- 260 (482)
Q Consensus 185 ~g~~lyi~d~~~~i~~~~-g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~-~~I~~i~-~~G~v~~~~- 260 (482)
+++.+|+++..+.+..+. .+|+..-.. . ....+..+ . .-.++.|||... ++|+.++ .+|++.-..
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~--~------~~~~~~~~--~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~ 103 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRF--D------LPGPISGA--P-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIY 103 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEE--E------CSSCGGSG--E-EEETTEEEEEETTSEEEEEETTTSCEEEEEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEe--e------ccccccce--e-eecccccccccceeeeEecccCCcceeeeec
Confidence 455788886666665555 477652100 0 00111122 2 223578999987 7899999 889876653
Q ss_pred eecc--CCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccC
Q psy8782 261 RLNV--TRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLA 338 (482)
Q Consensus 261 g~~~--~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~ 338 (482)
.... ..+..+...+++ ++.+|++.. ++.|+.++. .+|.+.--.-.... .+... ...+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~g~l~~~d~------~tG~~~w~~~~~~~----------~~~~~-~~~~~ 163 (238)
T PF13360_consen 104 LTSSPPAGVRSSSSPAVD--GDRLYVGTS-SGKLVALDP------KTGKLLWKYPVGEP----------RGSSP-ISSFS 163 (238)
T ss_dssp E-SSCTCSTB--SEEEEE--TTEEEEEET-CSEEEEEET------TTTEEEEEEESSTT-----------SS---EEEET
T ss_pred cccccccccccccCceEe--cCEEEEEec-cCcEEEEec------CCCcEEEEeecCCC----------CCCcc-eeeec
Confidence 2221 123334445554 567777776 788899985 56765332211110 00000 00122
Q ss_pred CcceEEEeCCCcEEEEECCC-EEEEc-CCCcEEEEEcCCCCCCCCCcCCCCceEEeccccceeEEeecCcc
Q psy8782 339 YPKGVAVSADNILYFADGTN-IRMVD-RDGIVTTVIGNHMHKSHWKPIPCEGTLNIEEVSETMRDIRHTTG 407 (482)
Q Consensus 339 ~P~giavd~~G~lyvaD~~n-Ir~i~-~~G~i~ti~G~~~~~~~~~~~~~dg~l~v~~~~~~~~~l~~p~g 407 (482)
...+-.+-.++.+|++.... +-.+| .+|.... -.. .......+...++.||+.....++..++.-+|
T Consensus 164 ~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~~~w-~~~-~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG 232 (238)
T PF13360_consen 164 DINGSPVISDGRVYVSSGDGRVVAVDLATGEKLW-SKP-ISGIYSLPSVDGGTLYVTSSDGRLYALDLKTG 232 (238)
T ss_dssp TEEEEEECCTTEEEEECCTSSEEEEETTTTEEEE-EEC-SS-ECECEECCCTEEEEEETTTEEEEEETTTT
T ss_pred ccccceEEECCEEEEEcCCCeEEEEECCCCCEEE-Eec-CCCccCCceeeCCEEEEEeCCCEEEEEECCCC
Confidence 22333333366999998766 44446 4676442 222 22122224556678887664445666665444
No 82
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=93.38 E-value=1.1 Score=47.30 Aligned_cols=64 Identities=23% Similarity=0.277 Sum_probs=39.1
Q ss_pred eecCCccEEEEcCCCCEEEEEC-------CcEEE----EcCCCeEEEEEeeccCCC-CceeeEEEeCCCCeEEEEe
Q psy8782 223 QRLLAPVALATAPDGSLFVGDF-------NLIRR----IMTDGTVRTVVRLNVTRV-AYRYHIAYSPLDGTLYISD 286 (482)
Q Consensus 223 ~~l~~P~giavd~~G~lyv~D~-------~~I~~----i~~~G~v~~~~g~~~~~~-~~p~giavd~~~g~lyVaD 286 (482)
.-|..|.+|++|+.|+|||+.- ++..= ..++++.-++.-...... ..-.|++++|+...|||.-
T Consensus 497 ~~f~~PDnl~fD~~GrLWi~TDg~~s~~~~~~~G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlFV~v 572 (616)
T COG3211 497 NWFNSPDNLAFDPWGRLWIQTDGSGSTLRNRFRGVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLFVNV 572 (616)
T ss_pred ccccCCCceEECCCCCEEEEecCCCCccCcccccccccccCCCccceeeeeccCCCcceeecceeCCCCceEEEEe
Confidence 5688999999999999999864 11221 124443333221111111 2346889999666888874
No 83
>PRK04792 tolB translocation protein TolB; Provisional
Probab=93.36 E-value=12 Score=39.38 Aligned_cols=65 Identities=17% Similarity=0.164 Sum_probs=37.5
Q ss_pred cEEEEcCCCC-EEEE-EC---CcEEEEcCC-CeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCC--CEEEEEec
Q psy8782 229 VALATAPDGS-LFVG-DF---NLIRRIMTD-GTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPES--HQILRVKN 297 (482)
Q Consensus 229 ~giavd~~G~-lyv~-D~---~~I~~i~~~-G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n--~~I~~~~~ 297 (482)
...++.|||. |+++ +. ..|++++.+ |+...+.-. .......+++|++..||++...+ .+|++++.
T Consensus 309 ~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~----g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl 381 (448)
T PRK04792 309 TEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFE----GEQNLGGSITPDGRSMIMVNRTNGKFNIARQDL 381 (448)
T ss_pred cceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecC----CCCCcCeeECCCCCEEEEEEecCCceEEEEEEC
Confidence 3456778874 5443 33 468888864 555444211 11223468898556787775533 46788874
No 84
>KOG0318|consensus
Probab=93.19 E-value=13 Score=39.13 Aligned_cols=70 Identities=19% Similarity=0.190 Sum_probs=46.7
Q ss_pred CceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeC
Q psy8782 268 AYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSA 347 (482)
Q Consensus 268 ~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~ 347 (482)
..-..+++++ ++.-+++-...+.|..++. ..|.-..++|. ..-+.-.+|+.+.
T Consensus 321 K~ITaLtv~~-d~~~i~SgsyDG~I~~W~~------~~g~~~~~~g~--------------------~h~nqI~~~~~~~ 373 (603)
T KOG0318|consen 321 KSITALTVSP-DGKTIYSGSYDGHINSWDS------GSGTSDRLAGK--------------------GHTNQIKGMAASE 373 (603)
T ss_pred cceeEEEEcC-CCCEEEeeccCceEEEEec------CCccccccccc--------------------cccceEEEEeecC
Confidence 4457789999 5544444455688888874 23333333322 1235678999998
Q ss_pred CCcEEEEECCC-EEEEcC
Q psy8782 348 DNILYFADGTN-IRMVDR 364 (482)
Q Consensus 348 ~G~lyvaD~~n-Ir~i~~ 364 (482)
.+.||.+-..+ +|+++.
T Consensus 374 ~~~~~t~g~Dd~l~~~~~ 391 (603)
T KOG0318|consen 374 SGELFTIGWDDTLRVISL 391 (603)
T ss_pred CCcEEEEecCCeEEEEec
Confidence 89999999888 888864
No 85
>KOG0266|consensus
Probab=92.82 E-value=15 Score=38.85 Aligned_cols=67 Identities=24% Similarity=0.261 Sum_probs=50.4
Q ss_pred CccEEEEcCCCCEEEEEC--CcEEEEcCC-CeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEec
Q psy8782 227 APVALATAPDGSLFVGDF--NLIRRIMTD-GTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKN 297 (482)
Q Consensus 227 ~P~giavd~~G~lyv~D~--~~I~~i~~~-G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~ 297 (482)
....+++.++|+++++-. +.||.++.. |+....+..... .-.++++++ +++++++-...+.|+.++.
T Consensus 248 ~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~---~is~~~f~~-d~~~l~s~s~d~~i~vwd~ 317 (456)
T KOG0266|consen 248 YVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSD---GISGLAFSP-DGNLLVSASYDGTIRVWDL 317 (456)
T ss_pred ceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCC---ceEEEEECC-CCCEEEEcCCCccEEEEEC
Confidence 447899999998887777 789988854 677666543322 356789998 7777777777999999995
No 86
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=92.41 E-value=0.22 Score=33.20 Aligned_cols=33 Identities=33% Similarity=0.392 Sum_probs=27.4
Q ss_pred eecCCccEEEEcCC-CCEEEEEC--CcEEEEcCCCe
Q psy8782 223 QRLLAPVALATAPD-GSLFVGDF--NLIRRIMTDGT 255 (482)
Q Consensus 223 ~~l~~P~giavd~~-G~lyv~D~--~~I~~i~~~G~ 255 (482)
..+..|.++++|+. +.||++|. +.|.+.+.+|.
T Consensus 6 ~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~ 41 (43)
T smart00135 6 EGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT 41 (43)
T ss_pred CCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence 35678999999995 58999999 68888887763
No 87
>KOG1274|consensus
Probab=91.87 E-value=20 Score=40.17 Aligned_cols=122 Identities=15% Similarity=0.192 Sum_probs=73.2
Q ss_pred ceeecCCc-cEEEEcCCCCEEEEEC--CcEEEEc-CCCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEe
Q psy8782 221 PKQRLLAP-VALATAPDGSLFVGDF--NLIRRIM-TDGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVK 296 (482)
Q Consensus 221 ~~~~l~~P-~giavd~~G~lyv~D~--~~I~~i~-~~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~ 296 (482)
..++|-.| ..++++.+|+..++-. ..|..++ .|+...+.+....+ .-.+|.++| ++++..+-..++.|+.++
T Consensus 91 iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~a---pVl~l~~~p-~~~fLAvss~dG~v~iw~ 166 (933)
T KOG1274|consen 91 ILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDA---PVLQLSYDP-KGNFLAVSSCDGKVQIWD 166 (933)
T ss_pred eeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCC---ceeeeeEcC-CCCEEEEEecCceEEEEE
Confidence 44667666 5688899998887777 4566665 33333333222122 135788999 888777777889999998
Q ss_pred cCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcce-EEEeCC-CcEEEEECCC-EEEEcCCC
Q psy8782 297 NAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKG-VAVSAD-NILYFADGTN-IRMVDRDG 366 (482)
Q Consensus 297 ~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~g-iavd~~-G~lyvaD~~n-Ir~i~~~G 366 (482)
. .++.+....+.-.. ..+.-++.+.. ++..|+ |.+.+.-..+ |.+++++|
T Consensus 167 ~------~~~~~~~tl~~v~k--------------~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~ 219 (933)
T KOG1274|consen 167 L------QDGILSKTLTGVDK--------------DNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKG 219 (933)
T ss_pred c------ccchhhhhcccCCc--------------cccccccceeeeeeecCCCCeEEeeccCCeEEEEccCC
Confidence 6 35554433321111 11222234444 567777 6777777777 77777654
No 88
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=91.46 E-value=19 Score=37.08 Aligned_cols=97 Identities=13% Similarity=0.199 Sum_probs=51.9
Q ss_pred CCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEECCC
Q psy8782 279 DGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADGTN 358 (482)
Q Consensus 279 ~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~~n 358 (482)
++.||++.. .+.++.++. .+|+..--. .+..+..++++ ++.||+.+...
T Consensus 256 ~~~vy~~~~-~g~l~ald~------~tG~~~W~~-----------------------~~~~~~~~~~~-~~~vy~~~~~g 304 (394)
T PRK11138 256 GGVVYALAY-NGNLVALDL------RSGQIVWKR-----------------------EYGSVNDFAVD-GGRIYLVDQND 304 (394)
T ss_pred CCEEEEEEc-CCeEEEEEC------CCCCEEEee-----------------------cCCCccCcEEE-CCEEEEEcCCC
Confidence 688998875 578888885 355432211 01122334554 67899987655
Q ss_pred -EEEEcC-CCcEEEEEcCCCCCCCCCcCCCCceEEeccccceeEEeecCc
Q psy8782 359 -IRMVDR-DGIVTTVIGNHMHKSHWKPIPCEGTLNIEEVSETMRDIRHTT 406 (482)
Q Consensus 359 -Ir~i~~-~G~i~ti~G~~~~~~~~~~~~~dg~l~v~~~~~~~~~l~~p~ 406 (482)
+..+++ +|++.--...........|+-.++.+|+.+....+..++..+
T Consensus 305 ~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~~t 354 (394)
T PRK11138 305 RVYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDSEGYLHWINRED 354 (394)
T ss_pred eEEEEECCCCcEEEcccccCCCcccCCEEECCEEEEEeCCCEEEEEECCC
Confidence 888886 676422111000111123333567788766544444444433
No 89
>PRK02888 nitrous-oxide reductase; Validated
Probab=91.06 E-value=3.2 Score=45.00 Aligned_cols=71 Identities=20% Similarity=0.156 Sum_probs=51.1
Q ss_pred CCccEEEEcCCC-CEEEEEC--CcEEEEcCCCeE----------EEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEE
Q psy8782 226 LAPVALATAPDG-SLFVGDF--NLIRRIMTDGTV----------RTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQI 292 (482)
Q Consensus 226 ~~P~giavd~~G-~lyv~D~--~~I~~i~~~G~v----------~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I 292 (482)
.+|+|++++||| .+|++.. +.|-.|+..-.. .++.+. ..--..|-..++|+ +|+.|++-.-..+|
T Consensus 321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvae-vevGlGPLHTaFDg-~G~aytslf~dsqv 398 (635)
T PRK02888 321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAE-PELGLGPLHTAFDG-RGNAYTTLFLDSQI 398 (635)
T ss_pred CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEe-eccCCCcceEEECC-CCCEEEeEeeccee
Confidence 479999999999 4777766 788888753311 111111 11123688999998 78999999999999
Q ss_pred EEEecC
Q psy8782 293 LRVKNA 298 (482)
Q Consensus 293 ~~~~~~ 298 (482)
.|++..
T Consensus 399 ~kwn~~ 404 (635)
T PRK02888 399 VKWNIE 404 (635)
T ss_pred EEEehH
Confidence 999954
No 90
>KOG3567|consensus
Probab=90.33 E-value=2.7 Score=43.35 Aligned_cols=77 Identities=10% Similarity=0.147 Sum_probs=48.4
Q ss_pred ceeecCCccEEEEcCCCCEEEEEC---CcEEEEcCCCeEEEEEeecc---CCCCceeeEE-EeCCCCeEEEEeCCCCEEE
Q psy8782 221 PKQRLLAPVALATAPDGSLFVGDF---NLIRRIMTDGTVRTVVRLNV---TRVAYRYHIA-YSPLDGTLYISDPESHQIL 293 (482)
Q Consensus 221 ~~~~l~~P~giavd~~G~lyv~D~---~~I~~i~~~G~v~~~~g~~~---~~~~~p~gia-vd~~~g~lyVaD~~n~~I~ 293 (482)
....|..|...++..++-|++.|. .++.+....|........+. -.-..|.-.. +-+.+..+-|+|..+.|++
T Consensus 214 ~~~~f~~~tsc~v~~n~~ihvfa~r~hTh~Lgk~vsG~lv~q~~~g~w~~ig~r~Pq~pqlf~~v~~~~~iadgD~~~vr 293 (501)
T KOG3567|consen 214 GTKHFETPTSCAVEENGPIHVFAYRCHTHILGKVVSGYLVAQKHEGHWTLIGRRDPQLPQLFEPVNHIVCVADGDNQRVR 293 (501)
T ss_pred CccccCCCceEEEecCcceeeEEeeeeehhhcceeeeeEeeeccCcceeeccccCCCchhhhcCCCcceeeecCCceEEE
Confidence 345677889999999999999999 46777777776533211110 0000222221 2222447888999999999
Q ss_pred EEec
Q psy8782 294 RVKN 297 (482)
Q Consensus 294 ~~~~ 297 (482)
.+-.
T Consensus 294 C~~~ 297 (501)
T KOG3567|consen 294 CFFQ 297 (501)
T ss_pred EEEc
Confidence 8874
No 91
>PRK04922 tolB translocation protein TolB; Provisional
Probab=90.10 E-value=27 Score=36.53 Aligned_cols=64 Identities=19% Similarity=0.246 Sum_probs=36.9
Q ss_pred EEEEcCCCC-EEE-EEC---CcEEEEcCC-CeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCC--CCEEEEEec
Q psy8782 230 ALATAPDGS-LFV-GDF---NLIRRIMTD-GTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPE--SHQILRVKN 297 (482)
Q Consensus 230 giavd~~G~-lyv-~D~---~~I~~i~~~-G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~--n~~I~~~~~ 297 (482)
.+++.|||. |++ +|. ..|++++.+ |+...+.-. . .....++++|++..|+++... ..+|+.++.
T Consensus 296 ~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~-g---~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~ 367 (433)
T PRK04922 296 EPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQ-G---NYNARASVSPDGKKIAMVHGSGGQYRIAVMDL 367 (433)
T ss_pred ceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecC-C---CCccCEEECCCCCEEEEEECCCCceeEEEEEC
Confidence 457788885 444 333 358888754 444443211 1 123457899955577776543 346888874
No 92
>KOG1215|consensus
Probab=90.06 E-value=3.8 Score=47.13 Aligned_cols=152 Identities=20% Similarity=0.245 Sum_probs=104.1
Q ss_pred cccCCCceEEEEcC-CCcEEEEeC--CcEEEEcCCCeEEE-EEeeCCCcccCCCccccccccccCCceEEEecCCCeEEE
Q psy8782 116 KQRLLAPVALATAP-DGSLFVGDF--NLIRRIMTDGTVRT-VVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYL 191 (482)
Q Consensus 116 ~~~l~~P~glavd~-~G~lyvaD~--~~Irki~~~G~v~t-i~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi 191 (482)
...+..|.++++|- .+++|.+|. ..|...+.+|.... ++... +..|..+++++..+.+|.
T Consensus 476 ~~g~~~~~~lavD~~~~~~y~tDe~~~~i~v~~~~g~~~~vl~~~~----------------l~~~r~~~v~p~~g~~~w 539 (877)
T KOG1215|consen 476 GDGLCIPEGLAVDWIGDNIYWTDEGNCLIEVADLDGSSRKVLVSKD----------------LDLPRSIAVDPEKGLMFW 539 (877)
T ss_pred ccCccccCcEEEEeccCCceecccCCceeEEEEccCCceeEEEecC----------------CCCccceeeccccCeeEE
Confidence 34567899999997 678999998 67777776766433 33221 145888888888888888
Q ss_pred EcCCC--eEEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcC-CCCEEEEEC--C-cEEEEcCCCeEEEEEeeccC
Q psy8782 192 KNKPR--IIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAP-DGSLFVGDF--N-LIRRIMTDGTVRTVVRLNVT 265 (482)
Q Consensus 192 ~d~~~--~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~-~G~lyv~D~--~-~I~~i~~~G~v~~~~g~~~~ 265 (482)
.|... .|..-..+|..... .....+..|.++++|- +..+|.+|. . .|.+.+-+|+...+ ....
T Consensus 540 td~~~~~~i~ra~~dg~~~~~---------l~~~~~~~p~glt~d~~~~~~yw~d~~~~~~i~~~~~~g~~r~~--~~~~ 608 (877)
T KOG1215|consen 540 TDWGQPPRIERASLDGSERAV---------LVTNGILWPNGLTIDYETDRLYWADAKLDYTIESANMDGQNRRV--VDSE 608 (877)
T ss_pred ecCCCCchhhhhcCCCCCceE---------EEeCCccCCCcceEEeecceeEEEcccCCcceeeeecCCCceEE--eccc
Confidence 77542 22222222222110 0223367899999997 668999999 4 79999999877662 2245
Q ss_pred CCCceeeEEEeCCCCeEEEEeCCCCEEEEEe
Q psy8782 266 RVAYRYHIAYSPLDGTLYISDPESHQILRVK 296 (482)
Q Consensus 266 ~~~~p~giavd~~~g~lyVaD~~n~~I~~~~ 296 (482)
.+.+|.++++- .+.+|-.|..++-+.+..
T Consensus 609 ~~~~p~~~~~~--~~~iyw~d~~~~~~~~~~ 637 (877)
T KOG1215|consen 609 DLPHPFGLSVF--EDYIYWTDWSNRAISRAE 637 (877)
T ss_pred cCCCceEEEEe--cceeEEeeccccceEeee
Confidence 67889999997 689999998887555554
No 93
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=90.04 E-value=0.28 Score=32.60 Aligned_cols=20 Identities=30% Similarity=0.559 Sum_probs=17.5
Q ss_pred CCcceEEEeCCCcEEEEECC
Q psy8782 338 AYPKGVAVSADNILYFADGT 357 (482)
Q Consensus 338 ~~P~giavd~~G~lyvaD~~ 357 (482)
..|.+|++|++|++||+-..
T Consensus 13 ~~~~~IavD~~GNiYv~G~T 32 (38)
T PF06739_consen 13 DYGNGIAVDSNGNIYVTGYT 32 (38)
T ss_pred eeEEEEEECCCCCEEEEEee
Confidence 46899999999999998754
No 94
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=89.54 E-value=26 Score=35.62 Aligned_cols=227 Identities=13% Similarity=0.108 Sum_probs=106.4
Q ss_pred CCcEEEEeC-CcEEEEcC-CCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCCCeEEEEc-CCCc
Q psy8782 130 DGSLFVGDF-NLIRRIMT-DGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKPRIIKTTL-GDGH 206 (482)
Q Consensus 130 ~G~lyvaD~-~~Irki~~-~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~~~i~~~~-g~G~ 206 (482)
++.||+++. +.|..++. +|++.=-...+. . +.. +.++ +++.+|+...++.+..+. .+|+
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~-~------------~~~---~p~v--~~~~v~v~~~~g~l~ald~~tG~ 126 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDE-R------------LSG---GVGA--DGGLVFVGTEKGEVIALDAEDGK 126 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCC-C------------ccc---ceEE--cCCEEEEEcCCCEEEEEECCCCc
Confidence 578999887 68899984 687542211111 0 001 1122 245677766555544443 3555
Q ss_pred cccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC-CcEEEEcC-CCeEEEEEeeccCCC--CceeeEEEeCCCCeE
Q psy8782 207 QRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF-NLIRRIMT-DGTVRTVVRLNVTRV--AYRYHIAYSPLDGTL 282 (482)
Q Consensus 207 ~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~-~~I~~i~~-~G~v~~~~g~~~~~~--~~p~giavd~~~g~l 282 (482)
..-.. ... ...+..| ++ .++.+|+... +.|+.+++ +|++.-........+ ......++. ++.+
T Consensus 127 ~~W~~--~~~-----~~~~~~p---~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v 193 (377)
T TIGR03300 127 ELWRA--KLS-----SEVLSPP---LV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGV 193 (377)
T ss_pred Eeeee--ccC-----ceeecCC---EE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEE
Confidence 32100 000 0111122 12 2467777766 67888885 676543322211110 000112332 4566
Q ss_pred EEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCC-cceEEEeCCCcEEEEECCC-EE
Q psy8782 283 YISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAY-PKGVAVSADNILYFADGTN-IR 360 (482)
Q Consensus 283 yVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~-P~giavd~~G~lyvaD~~n-Ir 360 (482)
|+.. .+++++.++. .+|.......... ..+.... ..+.. .....++ ++.+|++.... ++
T Consensus 194 ~~~~-~~g~v~ald~------~tG~~~W~~~~~~----------~~g~~~~-~~~~~~~~~p~~~-~~~vy~~~~~g~l~ 254 (377)
T TIGR03300 194 LVGF-AGGKLVALDL------QTGQPLWEQRVAL----------PKGRTEL-ERLVDVDGDPVVD-GGQVYAVSYQGRVA 254 (377)
T ss_pred EEEC-CCCEEEEEEc------cCCCEeeeecccc----------CCCCCch-hhhhccCCccEEE-CCEEEEEEcCCEEE
Confidence 6654 3578888885 3565332111000 0000000 00100 0111232 67899887655 88
Q ss_pred EEcC-CCcEEEEEcCCCCCCCCCcCCCCceEEeccccceeEEeecCcceE
Q psy8782 361 MVDR-DGIVTTVIGNHMHKSHWKPIPCEGTLNIEEVSETMRDIRHTTGWA 409 (482)
Q Consensus 361 ~i~~-~G~i~ti~G~~~~~~~~~~~~~dg~l~v~~~~~~~~~l~~p~gia 409 (482)
.+++ +|++.--..... ...|.-.++.+|+.....++..++..+|-.
T Consensus 255 a~d~~tG~~~W~~~~~~---~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~ 301 (377)
T TIGR03300 255 ALDLRSGRVLWKRDASS---YQGPAVDDNRLYVTDADGVVVALDRRSGSE 301 (377)
T ss_pred EEECCCCcEEEeeccCC---ccCceEeCCEEEEECCCCeEEEEECCCCcE
Confidence 8886 776544332111 112333467788866555666666555543
No 95
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=89.52 E-value=26 Score=37.22 Aligned_cols=139 Identities=19% Similarity=0.204 Sum_probs=68.0
Q ss_pred EEEcCCCCEEEEECCcEEEEcCCCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeC-------------CCCEEEEEec
Q psy8782 231 LATAPDGSLFVGDFNLIRRIMTDGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDP-------------ESHQILRVKN 297 (482)
Q Consensus 231 iavd~~G~lyv~D~~~I~~i~~~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~-------------~n~~I~~~~~ 297 (482)
+-.-++|+|++...+++++++..|++.............-..+...| +|++.+.-. -...|..++
T Consensus 153 ~~~l~nG~ll~~~~~~~~e~D~~G~v~~~~~l~~~~~~~HHD~~~l~-nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd- 230 (477)
T PF05935_consen 153 FKQLPNGNLLIGSGNRLYEIDLLGKVIWEYDLPGGYYDFHHDIDELP-NGNLLILASETKYVDEDKDVDTVEDVIVEVD- 230 (477)
T ss_dssp EEE-TTS-EEEEEBTEEEEE-TT--EEEEEE--TTEE-B-S-EEE-T-TS-EEEEEEETTEE-TS-EE---S-EEEEE--
T ss_pred eeEcCCCCEEEecCCceEEEcCCCCEEEeeecCCcccccccccEECC-CCCEEEEEeecccccCCCCccEecCEEEEEC-
Confidence 55678999999999999999999998776544221111224566667 655444322 134566676
Q ss_pred CCccCCCCCcEEEEecCCcccCCCCCC-----ccCCC-ccccccccCCcceEEEeC-CCcEEEEECCC--EEEEc-CCCc
Q psy8782 298 AMDFSAPDYNVEPAVGSGERCLPGDEA-----HCGDG-APARDAKLAYPKGVAVSA-DNILYFADGTN--IRMVD-RDGI 367 (482)
Q Consensus 298 ~~~~~~~~g~~~~vaG~g~~~~~g~~~-----~~gdg-~~a~~a~l~~P~giavd~-~G~lyvaD~~n--Ir~i~-~~G~ 367 (482)
++|++...--....-.+.... ..++. +.....--.+-.+|..|+ ++.|+|+-... |.+|+ .+|+
T Consensus 231 ------~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~ 304 (477)
T PF05935_consen 231 ------PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGK 304 (477)
T ss_dssp ------TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-
T ss_pred ------CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCc
Confidence 466654442211110010000 00000 001122245678899998 66677766544 99999 7999
Q ss_pred EEEEEcCCCC
Q psy8782 368 VTTVIGNHMH 377 (482)
Q Consensus 368 i~ti~G~~~~ 377 (482)
|.-++|.+..
T Consensus 305 i~Wilg~~~~ 314 (477)
T PF05935_consen 305 IKWILGPPGG 314 (477)
T ss_dssp EEEEES-STT
T ss_pred EEEEeCCCCC
Confidence 9999987653
No 96
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=89.51 E-value=24 Score=35.10 Aligned_cols=126 Identities=16% Similarity=0.176 Sum_probs=76.7
Q ss_pred eecCCccEEEEcCCCCEEEEEC--CcEEEEc-CCCeEEEEEeec--------cCCCCceeeEEEe---CCCCeEEEEeC-
Q psy8782 223 QRLLAPVALATAPDGSLFVGDF--NLIRRIM-TDGTVRTVVRLN--------VTRVAYRYHIAYS---PLDGTLYISDP- 287 (482)
Q Consensus 223 ~~l~~P~giavd~~G~lyv~D~--~~I~~i~-~~G~v~~~~g~~--------~~~~~~p~giavd---~~~g~lyVaD~- 287 (482)
.......+|..+++|++.|+-. +.|.+|+ .+|++.-.++.. ...|.+.....+- +.++.|-+-|.
T Consensus 141 ~D~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~ 220 (299)
T PF14269_consen 141 WDYFHINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNA 220 (299)
T ss_pred CCccEeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCC
Confidence 3445677899999999999888 7899999 788888776532 1224444455554 22566666665
Q ss_pred ---------CCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCC--cceEEEeCCCcEEEEEC
Q psy8782 288 ---------ESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAY--PKGVAVSADNILYFADG 356 (482)
Q Consensus 288 ---------~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~--P~giavd~~G~lyvaD~ 356 (482)
...+|..++. .+.+++.+...-.. .++ +.. .-.+..-++|+++|...
T Consensus 221 ~~~~~~~~~s~~~v~~ld~------~~~~~~~~~~~~~~---------~~~-------~~s~~~G~~Q~L~nGn~li~~g 278 (299)
T PF14269_consen 221 NSDFNGTEPSRGLVLELDP------ETMTVTLVREYSDH---------PDG-------FYSPSQGSAQRLPNGNVLIGWG 278 (299)
T ss_pred CCCCCCCcCCCceEEEEEC------CCCEEEEEEEeecC---------CCc-------ccccCCCcceECCCCCEEEecC
Confidence 3456777773 23333333221000 011 111 11244457799999988
Q ss_pred CC--EEEEcCCCcEEE
Q psy8782 357 TN--IRMVDRDGIVTT 370 (482)
Q Consensus 357 ~n--Ir~i~~~G~i~t 370 (482)
.. +.-++++|++.-
T Consensus 279 ~~g~~~E~~~~G~vv~ 294 (299)
T PF14269_consen 279 NNGRISEFTPDGEVVW 294 (299)
T ss_pred CCceEEEECCCCCEEE
Confidence 76 778889998754
No 97
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=89.24 E-value=27 Score=35.45 Aligned_cols=126 Identities=15% Similarity=0.139 Sum_probs=70.8
Q ss_pred CCCEEEEEC-CcEEEEcC-CCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEec
Q psy8782 236 DGSLFVGDF-NLIRRIMT-DGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVG 313 (482)
Q Consensus 236 ~G~lyv~D~-~~I~~i~~-~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG 313 (482)
++.||++.. +.++.+++ +|++.-... ...+...+++ ++.||+++ .+++++.++. .+|+...-.
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~-----~~~~~~p~~~--~~~vyv~~-~~G~l~~~d~------~tG~~~W~~- 305 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSGRVLWKRD-----ASSYQGPAVD--DNRLYVTD-ADGVVVALDR------RSGSELWKN- 305 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCCcEEEeec-----cCCccCceEe--CCEEEEEC-CCCeEEEEEC------CCCcEEEcc-
Confidence 578999887 78999985 676543321 1123334554 78999986 4688999985 355432110
Q ss_pred CCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEECCC-EEEEcC-CCcEEEEEcCCCCCCCCCcCCCCceEE
Q psy8782 314 SGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADGTN-IRMVDR-DGIVTTVIGNHMHKSHWKPIPCEGTLN 391 (482)
Q Consensus 314 ~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~~n-Ir~i~~-~G~i~ti~G~~~~~~~~~~~~~dg~l~ 391 (482)
...+ ......| ++ .++.||+.+... ++.+++ +|++.--...+.......|.-.++.||
T Consensus 306 ------------~~~~----~~~~ssp---~i-~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~~l~ 365 (377)
T TIGR03300 306 ------------DELK----YRQLTAP---AV-VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGDGLL 365 (377)
T ss_pred ------------cccc----CCccccC---EE-ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECCEEE
Confidence 0000 0112233 23 256888887655 888886 587654443333212234555566777
Q ss_pred ecccc
Q psy8782 392 IEEVS 396 (482)
Q Consensus 392 v~~~~ 396 (482)
+....
T Consensus 366 v~~~d 370 (377)
T TIGR03300 366 VQTRD 370 (377)
T ss_pred EEeCC
Confidence 65443
No 98
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=88.97 E-value=0.38 Score=31.92 Aligned_cols=19 Identities=16% Similarity=0.368 Sum_probs=16.6
Q ss_pred CCceEEEEcCCCcEEEEeC
Q psy8782 120 LAPVALATAPDGSLFVGDF 138 (482)
Q Consensus 120 ~~P~glavd~~G~lyvaD~ 138 (482)
..|.+|++|++|+|||+-.
T Consensus 13 ~~~~~IavD~~GNiYv~G~ 31 (38)
T PF06739_consen 13 DYGNGIAVDSNGNIYVTGY 31 (38)
T ss_pred eeEEEEEECCCCCEEEEEe
Confidence 4799999999999999853
No 99
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=88.31 E-value=6.2 Score=37.42 Aligned_cols=156 Identities=18% Similarity=0.201 Sum_probs=73.1
Q ss_pred CCccEEEEcCCCCEEEEECCcEEEEc---CCCe----EEEEEeec-cCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEec
Q psy8782 226 LAPVALATAPDGSLFVGDFNLIRRIM---TDGT----VRTVVRLN-VTRVAYRYHIAYSPLDGTLYISDPESHQILRVKN 297 (482)
Q Consensus 226 ~~P~giavd~~G~lyv~D~~~I~~i~---~~G~----v~~~~g~~-~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~ 297 (482)
..=.-|+..|+|.||....+.+++.. ..+. ..+.++.+ =..+ ..|++++ .|.||..+. ...++|...
T Consensus 34 ~~~~~i~~~P~g~lY~I~~~~lY~~~~~~~~~~~~~~~~~~Ig~g~W~~F---~~i~~d~-~G~LYaV~~-~G~lyR~~~ 108 (229)
T PF14517_consen 34 NNFRDIAAGPNGRLYAIRNDGLYRGSPSSSGGNTWDSGSKQIGDGGWNSF---KFIFFDP-TGVLYAVTP-DGKLYRHPR 108 (229)
T ss_dssp TT-SEEEE-TTS-EEEEETTEEEEES---STT--HHHH-EEEE-S-GGG----SEEEE-T-TS-EEEEET-T-EEEEES-
T ss_pred cccceEEEcCCceEEEEECCceEEecCCccCcccccccCcccccCcccce---eEEEecC-CccEEEecc-ccceeeccC
Confidence 34456889999999999998777773 2221 22344432 2233 3799999 999998776 577788874
Q ss_pred CCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEECCC--EEEEcCCCc------EE
Q psy8782 298 AMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADGTN--IRMVDRDGI------VT 369 (482)
Q Consensus 298 ~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~~n--Ir~i~~~G~------i~ 369 (482)
.. ++...-..+.++. .| ....+...-|-++++|.||..+... .|...|++. -+
T Consensus 109 ~~-----~~~~~W~~~~~~~--------iG------~~GW~~f~~vfa~~~GvLY~i~~dg~~~~~~~p~~~~~~W~~~s 169 (229)
T PF14517_consen 109 PT-----NGSDNWIGGSGKK--------IG------GTGWNDFDAVFAGPNGVLYAITPDGRLYRRYRPDGGSDRWLSGS 169 (229)
T ss_dssp -------STT--HHH-HSEE--------EE-------SSGGGEEEEEE-TTS-EEEEETTE-EEEE---SSTT--HHHH-
T ss_pred CC-----ccCcchhhcccee--------cc------cCCCccceEEEeCCCccEEEEcCCCceEEeCCCCCCCCcccccc
Confidence 31 2221111111110 00 1124557788999999999988777 333344322 34
Q ss_pred EEEcCCCCC-CCCCcCCCCceEEeccccceeEEeecC
Q psy8782 370 TVIGNHMHK-SHWKPIPCEGTLNIEEVSETMRDIRHT 405 (482)
Q Consensus 370 ti~G~~~~~-~~~~~~~~dg~l~v~~~~~~~~~l~~p 405 (482)
++++...-. .......++|.||..+..-.+.+-.-|
T Consensus 170 ~~v~~~gw~~~~~i~~~~~g~L~~V~~~G~lyr~~~p 206 (229)
T PF14517_consen 170 GLVGGGGWDSFHFIFFSPDGNLWAVKSNGKLYRGRPP 206 (229)
T ss_dssp EEEESSSGGGEEEEEE-TTS-EEEE-ETTEEEEES--
T ss_pred ceeccCCcccceEEeeCCCCcEEEEecCCEEeccCCc
Confidence 444433321 122333466677655433344333333
No 100
>PRK03629 tolB translocation protein TolB; Provisional
Probab=88.17 E-value=36 Score=35.54 Aligned_cols=65 Identities=11% Similarity=0.124 Sum_probs=37.2
Q ss_pred cEEEEcCCCC-E-EEEEC---CcEEEEcCCC-eEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCC--CCEEEEEec
Q psy8782 229 VALATAPDGS-L-FVGDF---NLIRRIMTDG-TVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPE--SHQILRVKN 297 (482)
Q Consensus 229 ~giavd~~G~-l-yv~D~---~~I~~i~~~G-~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~--n~~I~~~~~ 297 (482)
...++.|||. | |+++. .+|++++.++ ....+... .......+++|++..|+++... ...|+.++.
T Consensus 290 ~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~----~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl 362 (429)
T PRK03629 290 TEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWE----GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDL 362 (429)
T ss_pred CceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecC----CCCccCEEECCCCCEEEEEEccCCCceEEEEEC
Confidence 4567888885 4 44544 3788888765 44333211 1123457788844566665433 345777774
No 101
>PRK02889 tolB translocation protein TolB; Provisional
Probab=87.60 E-value=39 Score=35.25 Aligned_cols=110 Identities=15% Similarity=0.187 Sum_probs=57.0
Q ss_pred EEEEcCCCC-EEE-EEC---CcEEEEcCCC-eEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCC--CEEEEEecCCcc
Q psy8782 230 ALATAPDGS-LFV-GDF---NLIRRIMTDG-TVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPES--HQILRVKNAMDF 301 (482)
Q Consensus 230 giavd~~G~-lyv-~D~---~~I~~i~~~G-~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n--~~I~~~~~~~~~ 301 (482)
..++.|||. |++ ++. ..|++++.++ +...+.-. . ......+++|++..|+++.... .+|+.++.
T Consensus 288 ~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~-g---~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~---- 359 (427)
T PRK02889 288 EPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFT-G---SYNTSPRISPDGKLLAYISRVGGAFKLYVQDL---- 359 (427)
T ss_pred CeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecC-C---CCcCceEECCCCCEEEEEEccCCcEEEEEEEC----
Confidence 346788885 443 443 3677777554 43333211 1 1223467888444665554332 46888875
Q ss_pred CCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCc-E-EEEECCC---EEEEcCCCcEEEEE
Q psy8782 302 SAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNI-L-YFADGTN---IRMVDRDGIVTTVI 372 (482)
Q Consensus 302 ~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~-l-yvaD~~n---Ir~i~~~G~i~ti~ 372 (482)
.++....+... . .....++.++|. | |.++... +..++.+|.....+
T Consensus 360 --~~g~~~~lt~~--------------~---------~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~~~~l 410 (427)
T PRK02889 360 --ATGQVTALTDT--------------T---------RDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRIKQRL 410 (427)
T ss_pred --CCCCeEEccCC--------------C---------CccCceECCCCCEEEEEEecCCCEEEEEEECCCCceEEe
Confidence 34444433210 0 012346777775 3 3343332 66777788766554
No 102
>PRK01742 tolB translocation protein TolB; Provisional
Probab=87.53 E-value=39 Score=35.22 Aligned_cols=61 Identities=18% Similarity=0.227 Sum_probs=35.9
Q ss_pred cEEEEcCCCC-EEEE-EC---CcEEEEcCCCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEec
Q psy8782 229 VALATAPDGS-LFVG-DF---NLIRRIMTDGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKN 297 (482)
Q Consensus 229 ~giavd~~G~-lyv~-D~---~~I~~i~~~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~ 297 (482)
..+++.|||. |+++ +. -+|+.++.++...+.++. . . +..+++|++..|+++.. ..|.+++.
T Consensus 295 ~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~-~-~----~~~~~SpDG~~ia~~~~--~~i~~~Dl 360 (429)
T PRK01742 295 TEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGG-R-G----YSAQISADGKTLVMING--DNVVKQDL 360 (429)
T ss_pred CCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecC-C-C----CCccCCCCCCEEEEEcC--CCEEEEEC
Confidence 4567888886 4544 33 367777776654444321 1 1 34678884556766643 56777875
No 103
>KOG1446|consensus
Probab=87.48 E-value=31 Score=33.97 Aligned_cols=116 Identities=19% Similarity=0.232 Sum_probs=69.8
Q ss_pred cCCccEEEEcCCCCEEEEEC--CcEEEEcC----CCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecC
Q psy8782 225 LLAPVALATAPDGSLFVGDF--NLIRRIMT----DGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNA 298 (482)
Q Consensus 225 l~~P~giavd~~G~lyv~D~--~~I~~i~~----~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~ 298 (482)
+..+--.|.||+|-||.+-. ..|+.+|. .|-..++ .........-..|-++| +|...+.-+.++.|+.+++
T Consensus 140 ~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf-~i~~~~~~ew~~l~FS~-dGK~iLlsT~~s~~~~lDA- 216 (311)
T KOG1446|consen 140 LSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTF-SITDNDEAEWTDLEFSP-DGKSILLSTNASFIYLLDA- 216 (311)
T ss_pred cCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeE-ccCCCCccceeeeEEcC-CCCEEEEEeCCCcEEEEEc-
Confidence 34566788999998887776 46777662 2333332 22223344557899999 6655555556788888886
Q ss_pred CccCCCCCcE-EEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEECCC--EEEEc-CCCc
Q psy8782 299 MDFSAPDYNV-EPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADGTN--IRMVD-RDGI 367 (482)
Q Consensus 299 ~~~~~~~g~~-~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~~n--Ir~i~-~~G~ 367 (482)
.+|.+ .++.+. ....+.|-+-++.||+...++-++. |.+.+ .+|.
T Consensus 217 -----f~G~~~~tfs~~-------------------~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~ 265 (311)
T KOG1446|consen 217 -----FDGTVKSTFSGY-------------------PNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGK 265 (311)
T ss_pred -----cCCcEeeeEeec-------------------cCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCc
Confidence 56763 233321 1123456677788998877766553 44443 3444
No 104
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=87.09 E-value=6.8 Score=37.14 Aligned_cols=150 Identities=19% Similarity=0.226 Sum_probs=72.0
Q ss_pred CCCceEEEEcCCCcEEEEeCCcEEEEcC---CCe----EEEEEeeC-CCcccCCCccccccccccCCceEEEecCC-CeE
Q psy8782 119 LLAPVALATAPDGSLFVGDFNLIRRIMT---DGT----VRTVVRLK-NQKFEKFPKILTSCFLSLSPSGILQKGDG-SNI 189 (482)
Q Consensus 119 l~~P~glavd~~G~lyvaD~~~Irki~~---~G~----v~ti~g~g-~~~~~~~~~~~~~~~~~~~P~gi~~~~~g-~~l 189 (482)
+..=.-|+..|+|.||......+.+-.+ .++ ..+.++.+ =..| ..++.+|.|++|.-+. ++|
T Consensus 33 w~~~~~i~~~P~g~lY~I~~~~lY~~~~~~~~~~~~~~~~~~Ig~g~W~~F---------~~i~~d~~G~LYaV~~~G~l 103 (229)
T PF14517_consen 33 WNNFRDIAAGPNGRLYAIRNDGLYRGSPSSSGGNTWDSGSKQIGDGGWNSF---------KFIFFDPTGVLYAVTPDGKL 103 (229)
T ss_dssp -TT-SEEEE-TTS-EEEEETTEEEEES---STT--HHHH-EEEE-S-GGG----------SEEEE-TTS-EEEEETT-EE
T ss_pred ccccceEEEcCCceEEEEECCceEEecCCccCcccccccCcccccCcccce---------eEEEecCCccEEEeccccce
Confidence 4445568899999999999876666631 221 12333332 1111 2455667776664222 244
Q ss_pred EEEcCCCeEEEEcCCCccccCCCcCCCCCCC-----c-eeecCCccEEEEcCCCCEEEEEC-CcEEEE-cCCCe------
Q psy8782 190 YLKNKPRIIKTTLGDGHQRPLDCKDCNGEAG-----P-KQRLLAPVALATAPDGSLFVGDF-NLIRRI-MTDGT------ 255 (482)
Q Consensus 190 yi~d~~~~i~~~~g~G~~~~~~~~~~~g~~~-----~-~~~l~~P~giavd~~G~lyv~D~-~~I~~i-~~~G~------ 255 (482)
|--... ...+..+.. . ....+....|..+++|.||..+. .+++|. .|++.
T Consensus 104 yR~~~~----------------~~~~~~W~~~~~~~iG~~GW~~f~~vfa~~~GvLY~i~~dg~~~~~~~p~~~~~~W~~ 167 (229)
T PF14517_consen 104 YRHPRP----------------TNGSDNWIGGSGKKIGGTGWNDFDAVFAGPNGVLYAITPDGRLYRRYRPDGGSDRWLS 167 (229)
T ss_dssp EEES-------------------STT--HHH-HSEEEE-SSGGGEEEEEE-TTS-EEEEETTE-EEEE---SSTT--HHH
T ss_pred eeccCC----------------CccCcchhhccceecccCCCccceEEEeCCCccEEEEcCCCceEEeCCCCCCCCcccc
Confidence 332110 000111100 0 12334577899999999999998 556666 44432
Q ss_pred EEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEec
Q psy8782 256 VRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKN 297 (482)
Q Consensus 256 v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~ 297 (482)
...+++ ......+..|...| +|+||.. ..+++++|-..
T Consensus 168 ~s~~v~--~~gw~~~~~i~~~~-~g~L~~V-~~~G~lyr~~~ 205 (229)
T PF14517_consen 168 GSGLVG--GGGWDSFHFIFFSP-DGNLWAV-KSNGKLYRGRP 205 (229)
T ss_dssp H-EEEE--SSSGGGEEEEEE-T-TS-EEEE--ETTEEEEES-
T ss_pred ccceec--cCCcccceEEeeCC-CCcEEEE-ecCCEEeccCC
Confidence 122222 23344577899999 9999999 45788988874
No 105
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=85.13 E-value=2.6 Score=39.20 Aligned_cols=53 Identities=26% Similarity=0.341 Sum_probs=40.7
Q ss_pred CCCEEEEEC--CcEEEEcCC-CeEEEEEeec---------cCCCCceeeEEEeCCCCeEEEEeCC
Q psy8782 236 DGSLFVGDF--NLIRRIMTD-GTVRTVVRLN---------VTRVAYRYHIAYSPLDGTLYISDPE 288 (482)
Q Consensus 236 ~G~lyv~D~--~~I~~i~~~-G~v~~~~g~~---------~~~~~~p~giavd~~~g~lyVaD~~ 288 (482)
+|.||---+ .+|.|++|+ |+++..+... ....+-++|||.+|..+.+|++-..
T Consensus 185 dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~ 249 (262)
T COG3823 185 DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGKL 249 (262)
T ss_pred ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecCc
Confidence 588887777 899999975 8998887643 1234568999999977799998643
No 106
>KOG0279|consensus
Probab=85.12 E-value=39 Score=32.90 Aligned_cols=187 Identities=13% Similarity=0.119 Sum_probs=104.7
Q ss_pred CceEEEEcCCCcEEEEeC--CcEEEEcCC-CeEEE-EEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCCC
Q psy8782 121 APVALATAPDGSLFVGDF--NLIRRIMTD-GTVRT-VVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKPR 196 (482)
Q Consensus 121 ~P~glavd~~G~lyvaD~--~~Irki~~~-G~v~t-i~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~~ 196 (482)
.-.++++.+||+..++-. ..+|..|.. |+-+. +.|.. ..-.++++++|+..+.-...++
T Consensus 65 ~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~-----------------~dVlsva~s~dn~qivSGSrDk 127 (315)
T KOG0279|consen 65 FVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHT-----------------KDVLSVAFSTDNRQIVSGSRDK 127 (315)
T ss_pred EecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecC-----------------CceEEEEecCCCceeecCCCcc
Confidence 345677788888888777 556666764 44333 33321 2235666777765555555556
Q ss_pred eEEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcCCC-CEEEEEC---CcEEEEcCCCe-EEEEEeeccCCCCcee
Q psy8782 197 IIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDG-SLFVGDF---NLIRRIMTDGT-VRTVVRLNVTRVAYRY 271 (482)
Q Consensus 197 ~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G-~lyv~D~---~~I~~i~~~G~-v~~~~g~~~~~~~~p~ 271 (482)
.|....--|.....-... ..=..-.-+.+.|+. +.++... ..|+..+.++. +.+.+ .+.-.+-+
T Consensus 128 Tiklwnt~g~ck~t~~~~--------~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~---~gh~~~v~ 196 (315)
T KOG0279|consen 128 TIKLWNTLGVCKYTIHED--------SHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTF---IGHSGYVN 196 (315)
T ss_pred eeeeeeecccEEEEEecC--------CCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcc---ccccccEE
Confidence 555543333221100000 001234457777753 5555544 56777776653 22211 22334567
Q ss_pred eEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCc-EEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCc
Q psy8782 272 HIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYN-VEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNI 350 (482)
Q Consensus 272 giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~-~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~ 350 (482)
.++++| +|.|..+-...+.++.+++. +++ +..+ +. +..-..++|.|+..
T Consensus 197 t~~vSp-DGslcasGgkdg~~~LwdL~------~~k~lysl----------------~a-------~~~v~sl~fspnry 246 (315)
T KOG0279|consen 197 TVTVSP-DGSLCASGGKDGEAMLWDLN------EGKNLYSL----------------EA-------FDIVNSLCFSPNRY 246 (315)
T ss_pred EEEECC-CCCEEecCCCCceEEEEEcc------CCceeEec----------------cC-------CCeEeeEEecCCce
Confidence 899999 99999998888888888863 222 2211 11 34456789988765
Q ss_pred EEEEECCC-EEEEcCC
Q psy8782 351 LYFADGTN-IRMVDRD 365 (482)
Q Consensus 351 lyvaD~~n-Ir~i~~~ 365 (482)
...+-... |++.+.+
T Consensus 247 wL~~at~~sIkIwdl~ 262 (315)
T KOG0279|consen 247 WLCAATATSIKIWDLE 262 (315)
T ss_pred eEeeccCCceEEEecc
Confidence 44444444 7777754
No 107
>KOG0272|consensus
Probab=84.23 E-value=30 Score=35.48 Aligned_cols=118 Identities=13% Similarity=0.135 Sum_probs=72.7
Q ss_pred CccEEEEcCCCCEEEEEC----CcEEEEcCCCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccC
Q psy8782 227 APVALATAPDGSLFVGDF----NLIRRIMTDGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFS 302 (482)
Q Consensus 227 ~P~giavd~~G~lyv~D~----~~I~~i~~~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~ 302 (482)
.-.++++.+||.|..+-. .||+-+-.--.+..+.| ....-.+++++| +|....+-...+.++.+++.
T Consensus 305 ~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~g----H~k~I~~V~fsP-NGy~lATgs~Dnt~kVWDLR---- 375 (459)
T KOG0272|consen 305 GVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAG----HIKEILSVAFSP-NGYHLATGSSDNTCKVWDLR---- 375 (459)
T ss_pred ccceeEecCCCceeeccCccchhheeecccCcEEEEecc----cccceeeEeECC-CceEEeecCCCCcEEEeeec----
Confidence 456899999999998877 35544433334444443 344568899999 99998888888877777742
Q ss_pred CCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeC-CCcEEEEEC-CC-EEEEcCC-C-cEEEEEcCCC
Q psy8782 303 APDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSA-DNILYFADG-TN-IRMVDRD-G-IVTTVIGNHM 376 (482)
Q Consensus 303 ~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~-~G~lyvaD~-~n-Ir~i~~~-G-~i~ti~G~~~ 376 (482)
....+.++.+ .-+--..+.+.| .|...++-+ .| +++-++. + .+.+++|...
T Consensus 376 -~r~~ly~ipA----------------------H~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~ 431 (459)
T KOG0272|consen 376 -MRSELYTIPA----------------------HSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEG 431 (459)
T ss_pred -ccccceeccc----------------------ccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCcc
Confidence 1122333322 223456788887 566666544 44 6655542 2 3555665443
No 108
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=83.87 E-value=13 Score=34.74 Aligned_cols=107 Identities=14% Similarity=0.139 Sum_probs=62.8
Q ss_pred cEEEEcCCCCEEEEEC-CcEEEEcCC-----CeEEE-EEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCcc
Q psy8782 229 VALATAPDGSLFVGDF-NLIRRIMTD-----GTVRT-VVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDF 301 (482)
Q Consensus 229 ~giavd~~G~lyv~D~-~~I~~i~~~-----G~v~~-~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~ 301 (482)
+|++.|. -+|+.+|. ..++..+|. +++.. .-|.....++. +-. .+|.||---....+|.|+++
T Consensus 134 WgLt~d~-~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNE---LE~--VdG~lyANVw~t~~I~rI~p---- 203 (262)
T COG3823 134 WGLTSDD-KNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNE---LEW--VDGELYANVWQTTRIARIDP---- 203 (262)
T ss_pred eeeecCC-cceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccc---eee--eccEEEEeeeeecceEEEcC----
Confidence 5677664 36888888 567777763 23322 21222222222 222 27899988888899999996
Q ss_pred CCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCC-cEEEEEC
Q psy8782 302 SAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADN-ILYFADG 356 (482)
Q Consensus 302 ~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G-~lyvaD~ 356 (482)
.+|.+....--..- +. .. .......+-++|||.++++ .+|++--
T Consensus 204 --~sGrV~~widlS~L--~~--~~-----~~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 204 --DSGRVVAWIDLSGL--LK--EL-----NLDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred --CCCcEEEEEEccCC--ch--hc-----CccccccccccceeecCcCCeEEEecC
Confidence 56776655432110 00 00 0112236789999999987 6888754
No 109
>PRK05137 tolB translocation protein TolB; Provisional
Probab=83.49 E-value=61 Score=33.81 Aligned_cols=64 Identities=20% Similarity=0.269 Sum_probs=35.8
Q ss_pred EEEEcCCCC-EEE-EEC---CcEEEEcCCCe-EEEEEeeccCCCCceeeEEEeCCCCeEEEEeCC--CCEEEEEec
Q psy8782 230 ALATAPDGS-LFV-GDF---NLIRRIMTDGT-VRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPE--SHQILRVKN 297 (482)
Q Consensus 230 giavd~~G~-lyv-~D~---~~I~~i~~~G~-v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~--n~~I~~~~~ 297 (482)
..++.|||. |++ ++. ..|++++.+|. +..+. ..... -...+++|++..|+++... ..+|..++.
T Consensus 294 ~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt-~~~~~---~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~ 365 (435)
T PRK05137 294 SPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRIS-FGGGR---YSTPVWSPRGDLIAFTKQGGGQFSIGVMKP 365 (435)
T ss_pred ceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEee-cCCCc---ccCeEECCCCCEEEEEEcCCCceEEEEEEC
Confidence 356777874 444 333 36888887664 43332 11111 2335688855577666543 357888873
No 110
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.86 E-value=51 Score=32.43 Aligned_cols=139 Identities=19% Similarity=0.246 Sum_probs=79.3
Q ss_pred cCCceEEEecCCCeEEEEcCC-------------------CeEEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcC
Q psy8782 175 LSPSGILQKGDGSNIYLKNKP-------------------RIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAP 235 (482)
Q Consensus 175 ~~P~gi~~~~~g~~lyi~d~~-------------------~~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~ 235 (482)
..|..+.+.+||..+.+++.. ..+-..+.+|....- -..+..-+..+-.-|+.++
T Consensus 162 iGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liek------h~Lp~~l~~lSiRHld~g~ 235 (366)
T COG3490 162 IGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEK------HTLPASLRQLSIRHLDIGR 235 (366)
T ss_pred cCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhh------ccCchhhhhcceeeeeeCC
Confidence 468889999999888887641 112222244443100 0000112334567899999
Q ss_pred CCCEEEEECC---------cEEEEcCCCeEEEEEeeccCC----CCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccC
Q psy8782 236 DGSLFVGDFN---------LIRRIMTDGTVRTVVRLNVTR----VAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFS 302 (482)
Q Consensus 236 ~G~lyv~D~~---------~I~~i~~~G~v~~~~g~~~~~----~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~ 302 (482)
||.||+.... .|-.+ ..|+-.+.+.....+ -++--.||+...++.+-++.+..++-..++.
T Consensus 236 dgtvwfgcQy~G~~~d~ppLvg~~-~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da----- 309 (366)
T COG3490 236 DGTVWFGCQYRGPRNDLPPLVGHF-RKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDA----- 309 (366)
T ss_pred CCcEEEEEEeeCCCccCCcceeec-cCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEc-----
Confidence 9999998751 23333 233333333322111 1344568888767788888877788777775
Q ss_pred CCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCC
Q psy8782 303 APDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADN 349 (482)
Q Consensus 303 ~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G 349 (482)
.+|.+. .++.|....|++.+..|
T Consensus 310 -~tG~vv-----------------------~~a~l~daaGva~~~~g 332 (366)
T COG3490 310 -ATGAVV-----------------------SEAALPDAAGVAAAKGG 332 (366)
T ss_pred -CCCcEE-----------------------ecccccccccceeccCc
Confidence 344332 23446666788887666
No 111
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=82.22 E-value=56 Score=32.45 Aligned_cols=40 Identities=15% Similarity=0.169 Sum_probs=33.5
Q ss_pred CCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEec
Q psy8782 267 VAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVG 313 (482)
Q Consensus 267 ~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG 313 (482)
+-+.+.|..++ +|++.|+-...+.|++|+. .+|.+.-..|
T Consensus 143 ~~HiNsV~~~~-~G~yLiS~R~~~~i~~I~~------~tG~I~W~lg 182 (299)
T PF14269_consen 143 YFHINSVDKDD-DGDYLISSRNTSTIYKIDP------STGKIIWRLG 182 (299)
T ss_pred ccEeeeeeecC-CccEEEEecccCEEEEEEC------CCCcEEEEeC
Confidence 34667888887 8899999999999999996 6888887775
No 112
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=82.18 E-value=7.6 Score=25.49 Aligned_cols=20 Identities=15% Similarity=0.331 Sum_probs=17.5
Q ss_pred CCCeEEEEeCCCCEEEEEec
Q psy8782 278 LDGTLYISDPESHQILRVKN 297 (482)
Q Consensus 278 ~~g~lyVaD~~n~~I~~~~~ 297 (482)
+++.|||++...+.|..++.
T Consensus 2 d~~~lyv~~~~~~~v~~id~ 21 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDT 21 (42)
T ss_pred CCCEEEEEeCCCCEEEEEEC
Confidence 35689999999999999984
No 113
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=81.16 E-value=2.3 Score=33.84 Aligned_cols=27 Identities=30% Similarity=0.630 Sum_probs=22.1
Q ss_pred cCCcceEEEeCCC-cEEEEECCC--EEEEc
Q psy8782 337 LAYPKGVAVSADN-ILYFADGTN--IRMVD 363 (482)
Q Consensus 337 l~~P~giavd~~G-~lyvaD~~n--Ir~i~ 363 (482)
|..|.||++++++ .||||+... |+++.
T Consensus 53 ~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~ 82 (86)
T PF01731_consen 53 FSFANGIAISPDKKYLYVASSLAHSIHVYK 82 (86)
T ss_pred CCCCceEEEcCCCCEEEEEeccCCeEEEEE
Confidence 8899999999875 599999875 66553
No 114
>KOG0263|consensus
Probab=80.92 E-value=53 Score=36.13 Aligned_cols=65 Identities=20% Similarity=0.276 Sum_probs=43.6
Q ss_pred cEEEEcCCCCEEEEEC--CcEEEEc-CCCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEec
Q psy8782 229 VALATAPDGSLFVGDF--NLIRRIM-TDGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKN 297 (482)
Q Consensus 229 ~giavd~~G~lyv~D~--~~I~~i~-~~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~ 297 (482)
..|++.|+|.-.++-. +.|..+| +.|+....+-. .-..-+.|.++. +|.+.++....+.|+.+|.
T Consensus 581 ~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~---Ht~ti~SlsFS~-dg~vLasgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 581 TALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKG---HTGTIYSLSFSR-DGNVLASGGADNSVRLWDL 648 (707)
T ss_pred EEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhc---ccCceeEEEEec-CCCEEEecCCCCeEEEEEc
Confidence 4677777775444333 6777777 45554333211 123456789998 9999999999999999985
No 115
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=80.43 E-value=73 Score=32.64 Aligned_cols=63 Identities=22% Similarity=0.239 Sum_probs=36.0
Q ss_pred EEEcCCCC-EEEE-EC---CcEEEEcCCC-eEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCC--CEEEEEec
Q psy8782 231 LATAPDGS-LFVG-DF---NLIRRIMTDG-TVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPES--HQILRVKN 297 (482)
Q Consensus 231 iavd~~G~-lyv~-D~---~~I~~i~~~G-~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n--~~I~~~~~ 297 (482)
.++.+||. |+++ +. ..|++++.++ +...+... ......++++|++..|+++.... .+|+.++.
T Consensus 283 ~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~----~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~ 353 (417)
T TIGR02800 283 PSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFR----GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDL 353 (417)
T ss_pred EEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC----CCCccCeEECCCCCEEEEEEccCCceEEEEEeC
Confidence 45667774 4443 33 3688887654 44333211 12345678888555677766543 47888874
No 116
>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.
Probab=78.76 E-value=2.8 Score=32.78 Aligned_cols=25 Identities=20% Similarity=0.313 Sum_probs=15.6
Q ss_pred eEEEEEcCcccCCceEe-eeEEEEEE
Q psy8782 3 KFTYAWNRLNVYRQRVY-GVTTALVK 27 (482)
Q Consensus 3 ~~~f~w~~~d~y~~~v~-g~~~a~v~ 27 (482)
.++|.||++|.-|+.|. |....+|.
T Consensus 51 ~~~~~WdG~d~~G~~~~~G~Y~~~v~ 76 (81)
T PF13860_consen 51 EHSFTWDGKDDDGNPVPDGTYTFRVT 76 (81)
T ss_dssp EEEEEE-SB-TTS-B--SEEEEEEEE
T ss_pred eEEEEECCCCCCcCCCCCCCEEEEEE
Confidence 47999999999999886 76665553
No 117
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=76.81 E-value=43 Score=35.94 Aligned_cols=64 Identities=20% Similarity=0.276 Sum_probs=42.1
Q ss_pred EEEEcCCCCEEEEECC-cEEEEcCCCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEe
Q psy8782 230 ALATAPDGSLFVGDFN-LIRRIMTDGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVK 296 (482)
Q Consensus 230 giavd~~G~lyv~D~~-~I~~i~~~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~ 296 (482)
-+..|.+|++||...+ +.|-..|+..+....-.....+..-+++..|. +|.||+.+ +.+|.++.
T Consensus 251 ll~qD~qG~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~-dGsLWv~t--~~giv~~~ 315 (671)
T COG3292 251 LLVQDAQGELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDT-DGSLWVGT--YGGIVRYL 315 (671)
T ss_pred eeecccCCCEEEeecccceeEecCCCCccccccccCCccccccceeecc-CCCEeeec--cCceEEEe
Confidence 4566889999999884 66555666654433222122233446788887 99999988 45677775
No 118
>KOG0282|consensus
Probab=76.13 E-value=98 Score=32.41 Aligned_cols=143 Identities=15% Similarity=0.180 Sum_probs=79.3
Q ss_pred EcCCCcEEEEeC--CcEEEEcC-CCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcC-CC-eEEEE
Q psy8782 127 TAPDGSLFVGDF--NLIRRIMT-DGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNK-PR-IIKTT 201 (482)
Q Consensus 127 vd~~G~lyvaD~--~~Irki~~-~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~-~~-~i~~~ 201 (482)
+..+|.=|.+-. ..|+..|. .|++..-+..+. -|.-+-+.+++.++|++.. ++ ++...
T Consensus 266 ~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~-----------------~~~cvkf~pd~~n~fl~G~sd~ki~~wD 328 (503)
T KOG0282|consen 266 FNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDK-----------------VPTCVKFHPDNQNIFLVGGSDKKIRQWD 328 (503)
T ss_pred ccccCCeeeeeecceeeeeeccccceEEEEEecCC-----------------CceeeecCCCCCcEEEEecCCCcEEEEe
Confidence 334444444444 34444454 476665444322 2455556666667777653 33 44444
Q ss_pred cCCCccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC--CcEEEEcCCCeEEEEEeeccCCCCceeeEEEeCCC
Q psy8782 202 LGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF--NLIRRIMTDGTVRTVVRLNVTRVAYRYHIAYSPLD 279 (482)
Q Consensus 202 ~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~--~~I~~i~~~G~v~~~~g~~~~~~~~p~giavd~~~ 279 (482)
.-+|+.... ....|..-..|.+-++|.=||+.+ ..+|.+.-.-.+..-.-....+...| .|++.| .
T Consensus 329 iRs~kvvqe----------Yd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP-~~~~~P-~ 396 (503)
T KOG0282|consen 329 IRSGKVVQE----------YDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMP-CLTLHP-N 396 (503)
T ss_pred ccchHHHHH----------HHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCc-ceecCC-C
Confidence 444443210 224455666788888888888777 55666542221111100111222233 588899 8
Q ss_pred CeEEEEeCCCCEEEEEecC
Q psy8782 280 GTLYISDPESHQILRVKNA 298 (482)
Q Consensus 280 g~lyVaD~~n~~I~~~~~~ 298 (482)
+..+.+.+-.++|..+...
T Consensus 397 ~~~~~aQs~dN~i~ifs~~ 415 (503)
T KOG0282|consen 397 GKWFAAQSMDNYIAIFSTV 415 (503)
T ss_pred CCeehhhccCceEEEEecc
Confidence 8999999999999988853
No 119
>KOG2055|consensus
Probab=74.82 E-value=30 Score=35.91 Aligned_cols=68 Identities=21% Similarity=0.236 Sum_probs=41.2
Q ss_pred ccEEEEcCCCCEEE-EEC---CcEEEEc-CCCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEe
Q psy8782 228 PVALATAPDGSLFV-GDF---NLIRRIM-TDGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVK 296 (482)
Q Consensus 228 P~giavd~~G~lyv-~D~---~~I~~i~-~~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~ 296 (482)
-..|.+.+|..|.. +.. +.+|-+- |.=++..-+......+.++..++++|..|.|-|... .+||..+.
T Consensus 438 Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe-~grv~l~k 510 (514)
T KOG2055|consen 438 ITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNE-AGRVHLFK 510 (514)
T ss_pred eeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecC-CCceeeEe
Confidence 45677888776543 333 4555553 444333333333566789999999996777777654 45555443
No 120
>PRK13616 lipoprotein LpqB; Provisional
Probab=74.67 E-value=1.4e+02 Score=32.80 Aligned_cols=68 Identities=12% Similarity=0.090 Sum_probs=35.7
Q ss_pred CccEEEEcCCCC-EEEEECCcEEE---E-cCCCeEEEEE---eeccCCCCc-eeeEEEeCCCCeEEEEeC-CCCEEEEEe
Q psy8782 227 APVALATAPDGS-LFVGDFNLIRR---I-MTDGTVRTVV---RLNVTRVAY-RYHIAYSPLDGTLYISDP-ESHQILRVK 296 (482)
Q Consensus 227 ~P~giavd~~G~-lyv~D~~~I~~---i-~~~G~v~~~~---g~~~~~~~~-p~giavd~~~g~lyVaD~-~n~~I~~~~ 296 (482)
.+..+.+.+||. |.+.-..+|+. . +.+|. .++- .. ...+.. +..++-.. ++.|+|... .+..|+++.
T Consensus 449 ~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~-~~l~~~~~l-~~~l~~~~~~l~W~~-~~~L~V~~~~~~~~v~~v~ 525 (591)
T PRK13616 449 PISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQ-YALTNPREV-GPGLGDTAVSLDWRT-GDSLVVGRSDPEHPVWYVN 525 (591)
T ss_pred CcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCc-eeecccEEe-ecccCCccccceEec-CCEEEEEecCCCCceEEEe
Confidence 467788888883 43333344443 2 24554 2220 00 112222 35566666 777877644 346688887
Q ss_pred c
Q psy8782 297 N 297 (482)
Q Consensus 297 ~ 297 (482)
.
T Consensus 526 v 526 (591)
T PRK13616 526 L 526 (591)
T ss_pred c
Confidence 3
No 121
>PRK00178 tolB translocation protein TolB; Provisional
Probab=73.57 E-value=1.2e+02 Score=31.47 Aligned_cols=64 Identities=17% Similarity=0.171 Sum_probs=36.0
Q ss_pred EEEEcCCCC-EEEE-EC---CcEEEEcC-CCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCC--CEEEEEec
Q psy8782 230 ALATAPDGS-LFVG-DF---NLIRRIMT-DGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPES--HQILRVKN 297 (482)
Q Consensus 230 giavd~~G~-lyv~-D~---~~I~~i~~-~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n--~~I~~~~~ 297 (482)
...+.|||. |+++ +. ..|++++. .|+...+...+ ......+++|++..|+++.... ..|+.++.
T Consensus 291 ~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~----~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl 362 (430)
T PRK00178 291 EPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVG----NYNARPRLSADGKTLVMVHRQDGNFHVAAQDL 362 (430)
T ss_pred CeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCC----CCccceEECCCCCEEEEEEccCCceEEEEEEC
Confidence 345677774 5444 33 36888875 45554443111 1223457888566787776433 35777875
No 122
>PRK01742 tolB translocation protein TolB; Provisional
Probab=73.49 E-value=1.2e+02 Score=31.56 Aligned_cols=65 Identities=20% Similarity=0.119 Sum_probs=34.9
Q ss_pred cEEEEcCCCC-EEE-EEC---CcEEEEcCC-CeEEEEEeeccCCCCceeeEEEeCCCCeEEEEe--CCCCEEEEEec
Q psy8782 229 VALATAPDGS-LFV-GDF---NLIRRIMTD-GTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISD--PESHQILRVKN 297 (482)
Q Consensus 229 ~giavd~~G~-lyv-~D~---~~I~~i~~~-G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD--~~n~~I~~~~~ 297 (482)
..++..|||. |.+ +.. ..|+.++.. |+...+... . . +-..++++|++..|+++- .++-+|+.++.
T Consensus 207 ~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~-~-g--~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~ 279 (429)
T PRK01742 207 MSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASF-R-G--HNGAPAFSPDGSRLAFASSKDGVLNIYVMGA 279 (429)
T ss_pred ccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecC-C-C--ccCceeECCCCCEEEEEEecCCcEEEEEEEC
Confidence 4567788884 433 332 358888754 433333211 1 1 123478899444576653 33346777774
No 123
>PRK04922 tolB translocation protein TolB; Provisional
Probab=71.16 E-value=1.4e+02 Score=31.18 Aligned_cols=64 Identities=20% Similarity=0.253 Sum_probs=35.9
Q ss_pred EEEEcCCCC-EEEE-EC---CcEEEEcCC-CeEEEEEeeccCCCCceeeEEEeCCCCeEEEE-eC-CCCEEEEEec
Q psy8782 230 ALATAPDGS-LFVG-DF---NLIRRIMTD-GTVRTVVRLNVTRVAYRYHIAYSPLDGTLYIS-DP-ESHQILRVKN 297 (482)
Q Consensus 230 giavd~~G~-lyv~-D~---~~I~~i~~~-G~v~~~~g~~~~~~~~p~giavd~~~g~lyVa-D~-~n~~I~~~~~ 297 (482)
.+++.|||. |+++ +. ..|+.++.+ |++..+... .......+++|++..|+++ +. +..+|++++.
T Consensus 252 ~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~----~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl 323 (433)
T PRK04922 252 APSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNH----FGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAA 323 (433)
T ss_pred CceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccC----CCCccceEECCCCCEEEEEECCCCCceEEEEEC
Confidence 467788885 5544 33 368888865 444433211 1123456888844456554 43 2456888874
No 124
>KOG2110|consensus
Probab=69.80 E-value=28 Score=35.04 Aligned_cols=68 Identities=24% Similarity=0.343 Sum_probs=50.4
Q ss_pred ccEEEEcCCCCEEEEEC--C-cEEEEc-CCCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEec
Q psy8782 228 PVALATAPDGSLFVGDF--N-LIRRIM-TDGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKN 297 (482)
Q Consensus 228 P~giavd~~G~lyv~D~--~-~I~~i~-~~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~ 297 (482)
-..||++++|.+.-+-+ + -||+|. ++|+...-+..+.. ...-+.|++++ +..+..+-..+..|..|.+
T Consensus 176 lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~-~~~IySL~Fs~-ds~~L~~sS~TeTVHiFKL 247 (391)
T KOG2110|consen 176 LAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY-PVSIYSLSFSP-DSQFLAASSNTETVHIFKL 247 (391)
T ss_pred eeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce-eeEEEEEEECC-CCCeEEEecCCCeEEEEEe
Confidence 35799999999988777 4 466665 89987776665433 55678999999 7777777777777777764
No 125
>KOG4649|consensus
Probab=68.99 E-value=1.2e+02 Score=29.57 Aligned_cols=30 Identities=10% Similarity=0.197 Sum_probs=20.0
Q ss_pred CCcEEEEeCCCCeeEEeecc-ceeecCCCCC
Q psy8782 451 QDLFYFVKELPQKIRDDLDE-LKLSSNNSNI 480 (482)
Q Consensus 451 ~g~~yi~d~~n~rIrk~~~~-~~~~~~~~~~ 480 (482)
.|.+..+++..-..+-.++. |+|.+-|-++
T Consensus 249 ~ghL~w~~~~g~t~~vy~~p~l~F~~h~~~~ 279 (354)
T KOG4649|consen 249 AGHLLWATQSGTTLHVYLSPKLRFDLHSPGI 279 (354)
T ss_pred cceEEEEecCCcEEEEEeCcccceeccCCCC
Confidence 38888888887777777764 5555554443
No 126
>KOG0301|consensus
Probab=68.12 E-value=1.9e+02 Score=31.76 Aligned_cols=108 Identities=15% Similarity=0.091 Sum_probs=67.2
Q ss_pred ecCCccEEEEcCCCCEEEEEC-CcEEEEcCCCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccC
Q psy8782 224 RLLAPVALATAPDGSLFVGDF-NLIRRIMTDGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFS 302 (482)
Q Consensus 224 ~l~~P~giavd~~G~lyv~D~-~~I~~i~~~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~ 302 (482)
...--.|+++-+++.+.=++- ..|++++.+|.+.... .+.-++-+.|.+.. ++.+.|+-..++.++.+..
T Consensus 178 HtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ge~l~~~---~ghtn~vYsis~~~-~~~~Ivs~gEDrtlriW~~----- 248 (745)
T KOG0301|consen 178 HTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDGEVLLEM---HGHTNFVYSISMAL-SDGLIVSTGEDRTLRIWKK----- 248 (745)
T ss_pred chhheeeeEEecCCCeEeecCCceEEEEeccCceeeee---eccceEEEEEEecC-CCCeEEEecCCceEEEeec-----
Confidence 334567888877655444444 7899999988755433 12234556777655 7788888887887777762
Q ss_pred CCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEECCC-EEEEcC
Q psy8782 303 APDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADGTN-IRMVDR 364 (482)
Q Consensus 303 ~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~~n-Ir~i~~ 364 (482)
+...-.+--+. ..-+...+-++|.|++.-+.+ ||+++.
T Consensus 249 ---~e~~q~I~lPt---------------------tsiWsa~~L~NgDIvvg~SDG~VrVfT~ 287 (745)
T KOG0301|consen 249 ---DECVQVITLPT---------------------TSIWSAKVLLNGDIVVGGSDGRVRVFTV 287 (745)
T ss_pred ---CceEEEEecCc---------------------cceEEEEEeeCCCEEEeccCceEEEEEe
Confidence 22211111100 123566777788999988877 887764
No 127
>KOG0286|consensus
Probab=67.23 E-value=1.3e+02 Score=29.58 Aligned_cols=116 Identities=18% Similarity=0.198 Sum_probs=72.6
Q ss_pred ccEEEEcC-CCCEEEEEC--CcEEEEc-CCCe-EEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccC
Q psy8782 228 PVALATAP-DGSLFVGDF--NLIRRIM-TDGT-VRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFS 302 (482)
Q Consensus 228 P~giavd~-~G~lyv~D~--~~I~~i~-~~G~-v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~ 302 (482)
-.+|++.| +++.||+-. ..-+.+| .+|. +.++.|. .. --+.+.+-| +|.-+++-+....++.++.-
T Consensus 189 V~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~gh-es---DINsv~ffP-~G~afatGSDD~tcRlyDlR---- 259 (343)
T KOG0286|consen 189 VMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGH-ES---DINSVRFFP-SGDAFATGSDDATCRLYDLR---- 259 (343)
T ss_pred EEEEecCCCCCCeEEecccccceeeeeccCcceeEeeccc-cc---ccceEEEcc-CCCeeeecCCCceeEEEeec----
Confidence 44677778 899999988 3333344 3444 4444332 22 245688888 88888888888888888853
Q ss_pred CCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEECCC--EEEEcC-CCcE-EEEEc
Q psy8782 303 APDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADGTN--IRMVDR-DGIV-TTVIG 373 (482)
Q Consensus 303 ~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~~n--Ir~i~~-~G~i-~ti~G 373 (482)
.+..+.+..... ....-.+++|...|.|.++-+.. +-+-|. .|+. ..+.|
T Consensus 260 -aD~~~a~ys~~~--------------------~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~G 313 (343)
T KOG0286|consen 260 -ADQELAVYSHDS--------------------IICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAG 313 (343)
T ss_pred -CCcEEeeeccCc--------------------ccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeec
Confidence 344555443211 12334689999999999997654 555553 4443 34433
No 128
>PF07202 Tcp10_C: T-complex protein 10 C-terminus; InterPro: IPR009852 Proteins in this entry include T-complex 10, involved in spermatogenesis in mice, and centromere protein J, which not only inhibits microtubule nucleation from the centrosome, but also depolymerises taxol-stabilised microtubules [, ]. These proteins share an approximately 180 residue C-terminal region which contains unsual G repreats [].
Probab=64.85 E-value=1.1e+02 Score=27.86 Aligned_cols=15 Identities=40% Similarity=0.388 Sum_probs=7.6
Q ss_pred EEEcCCCcEEEEEcC
Q psy8782 360 RMVDRDGIVTTVIGN 374 (482)
Q Consensus 360 r~i~~~G~i~ti~G~ 374 (482)
|+.-|||.+.++...
T Consensus 139 rreyPDGTvk~vy~d 153 (179)
T PF07202_consen 139 RREYPDGTVKTVYPD 153 (179)
T ss_pred EEEcCCCCEEEEecC
Confidence 333456666555543
No 129
>PRK04043 tolB translocation protein TolB; Provisional
Probab=64.62 E-value=1.8e+02 Score=30.25 Aligned_cols=106 Identities=12% Similarity=0.057 Sum_probs=56.6
Q ss_pred EEcCCC-CEEEEEC----CcEEEEcCCC-eEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCC--------CEEEEEec
Q psy8782 232 ATAPDG-SLFVGDF----NLIRRIMTDG-TVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPES--------HQILRVKN 297 (482)
Q Consensus 232 avd~~G-~lyv~D~----~~I~~i~~~G-~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n--------~~I~~~~~ 297 (482)
.+.||| .||++.. ..|++++.++ +..++.-.+. +...++|++..|.++-... .+|+.++.
T Consensus 283 ~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~------~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~ 356 (419)
T PRK04043 283 NFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK------NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLIST 356 (419)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC------cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEEC
Confidence 577888 4666554 3788888764 4434321111 1137888555555443322 47888874
Q ss_pred CCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCc-EEEE-ECCC---EEEEcCCCcEEEEE
Q psy8782 298 AMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNI-LYFA-DGTN---IRMVDRDGIVTTVI 372 (482)
Q Consensus 298 ~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~-lyva-D~~n---Ir~i~~~G~i~ti~ 372 (482)
..|....+.-. + .. ....+.|||. |+++ +.+. +..++.+|.....+
T Consensus 357 ------~~g~~~~LT~~--------------~-------~~--~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l 407 (419)
T PRK04043 357 ------NSDYIRRLTAN--------------G-------VN--QFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLF 407 (419)
T ss_pred ------CCCCeEECCCC--------------C-------Cc--CCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEe
Confidence 23443333210 0 00 1245778875 4444 3332 77888888766544
No 130
>KOG0293|consensus
Probab=64.56 E-value=1.8e+02 Score=30.09 Aligned_cols=148 Identities=18% Similarity=0.088 Sum_probs=88.2
Q ss_pred ceEEEEcCCCcEEEEeC--CcEEEEcCC-CeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCCCeE
Q psy8782 122 PVALATAPDGSLFVGDF--NLIRRIMTD-GTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKPRII 198 (482)
Q Consensus 122 P~glavd~~G~lyvaD~--~~Irki~~~-G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~~~i 198 (482)
-..|...||.+-.++.. ..++..+.+ |......+.+ +.+++...++.+|+-.+....+.+.+
T Consensus 272 V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~---------------~~~S~~sc~W~pDg~~~V~Gs~dr~i 336 (519)
T KOG0293|consen 272 VSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSG---------------LGFSVSSCAWCPDGFRFVTGSPDRTI 336 (519)
T ss_pred eEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccC---------------cCCCcceeEEccCCceeEecCCCCcE
Confidence 45677888888777776 455555543 5444433332 23456677777777554444445555
Q ss_pred EEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcCCC-CEEEEEC-CcEEEEcCCCeEEE-EEeeccCCCCceeeEEE
Q psy8782 199 KTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDG-SLFVGDF-NLIRRIMTDGTVRT-VVRLNVTRVAYRYHIAY 275 (482)
Q Consensus 199 ~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G-~lyv~D~-~~I~~i~~~G~v~~-~~g~~~~~~~~p~giav 275 (482)
....-+|....- + ...+...-.+|++.+|| .++..+. .+|+.++...++.. ++.. -..-..+.+
T Consensus 337 ~~wdlDgn~~~~-------W--~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise----~~~its~~i 403 (519)
T KOG0293|consen 337 IMWDLDGNILGN-------W--EGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISE----EQPITSFSI 403 (519)
T ss_pred EEecCCcchhhc-------c--cccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccc----cCceeEEEE
Confidence 555444443210 0 11122345789999999 4555555 67777775544333 2211 112356788
Q ss_pred eCCCCeEEEEeCCCCEEEEEecC
Q psy8782 276 SPLDGTLYISDPESHQILRVKNA 298 (482)
Q Consensus 276 d~~~g~lyVaD~~n~~I~~~~~~ 298 (482)
+. ++.+.+..-.++.|+.++..
T Consensus 404 S~-d~k~~LvnL~~qei~LWDl~ 425 (519)
T KOG0293|consen 404 SK-DGKLALVNLQDQEIHLWDLE 425 (519)
T ss_pred cC-CCcEEEEEcccCeeEEeecc
Confidence 87 88999999999999999864
No 131
>KOG0319|consensus
Probab=63.24 E-value=80 Score=34.79 Aligned_cols=105 Identities=19% Similarity=0.250 Sum_probs=69.8
Q ss_pred EEEecCCCeEEEEcCCCeEEEEcCCCcc-ccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC-C-cEEEEc-CCCe
Q psy8782 180 ILQKGDGSNIYLKNKPRIIKTTLGDGHQ-RPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF-N-LIRRIM-TDGT 255 (482)
Q Consensus 180 i~~~~~g~~lyi~d~~~~i~~~~g~G~~-~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~-~-~I~~i~-~~G~ 255 (482)
++++++|..||-+-.+.++.+...++.. .+.. .......-..+++.||+++.++-. + .++.+. +.|+
T Consensus 25 ~~~s~nG~~L~t~~~d~Vi~idv~t~~~~l~s~---------~~ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk 95 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGDRVIIIDVATGSIALPSG---------SNEDEDEITALALTPDEEVLVTASRSQLLRVWSLPTGK 95 (775)
T ss_pred eeECCCCCEEEEecCceEEEEEccCCceecccC---------CccchhhhheeeecCCccEEEEeeccceEEEEEcccch
Confidence 6778888889988888888888877776 3211 223344566889999886666555 4 455555 6776
Q ss_pred EEEEEeeccCCCCce-eeEEEeCCCCeEEEEeCCCCEEEEEec
Q psy8782 256 VRTVVRLNVTRVAYR-YHIAYSPLDGTLYISDPESHQILRVKN 297 (482)
Q Consensus 256 v~~~~g~~~~~~~~p-~giavd~~~g~lyVaD~~n~~I~~~~~ 297 (482)
+...+.. .-..| ..++++| .+.|.-+-...++|+.++.
T Consensus 96 ~irswKa---~He~Pvi~ma~~~-~g~LlAtggaD~~v~VWdi 134 (775)
T KOG0319|consen 96 LIRSWKA---IHEAPVITMAFDP-TGTLLATGGADGRVKVWDI 134 (775)
T ss_pred HhHhHhh---ccCCCeEEEEEcC-CCceEEeccccceEEEEEe
Confidence 6554422 11223 4688998 6666666666788888885
No 132
>KOG0289|consensus
Probab=62.30 E-value=1.2e+02 Score=31.59 Aligned_cols=101 Identities=12% Similarity=0.074 Sum_probs=59.1
Q ss_pred cEEEEcCCCCEEEEEC--CcEEEEc-CCCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCC
Q psy8782 229 VALATAPDGSLFVGDF--NLIRRIM-TDGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPD 305 (482)
Q Consensus 229 ~giavd~~G~lyv~D~--~~I~~i~-~~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~ 305 (482)
...+++|||.||.+-. ..|+.++ .++....-++... .--..|+++. +|...++......|+.+|+. ..
T Consensus 351 ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght---~~vk~i~FsE-NGY~Lat~add~~V~lwDLR-----Kl 421 (506)
T KOG0289|consen 351 TSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHT---GPVKAISFSE-NGYWLATAADDGSVKLWDLR-----KL 421 (506)
T ss_pred EEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCC---CceeEEEecc-CceEEEEEecCCeEEEEEeh-----hh
Confidence 4678999999999988 4555555 2333322222111 1235688886 78777777777778888853 23
Q ss_pred CcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEECCCE
Q psy8782 306 YNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADGTNI 359 (482)
Q Consensus 306 g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~~nI 359 (482)
.++.++.= + .+..-..+.||..|...++-+..+
T Consensus 422 ~n~kt~~l--------------~-------~~~~v~s~~fD~SGt~L~~~g~~l 454 (506)
T KOG0289|consen 422 KNFKTIQL--------------D-------EKKEVNSLSFDQSGTYLGIAGSDL 454 (506)
T ss_pred cccceeec--------------c-------ccccceeEEEcCCCCeEEeeccee
Confidence 33443321 0 112345688888887665554433
No 133
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=62.24 E-value=1.6e+02 Score=28.62 Aligned_cols=77 Identities=18% Similarity=0.157 Sum_probs=48.7
Q ss_pred ceeecCCccEEEEcC---CCC--EEEEEC-CcEEEEc----CCCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCC
Q psy8782 221 PKQRLLAPVALATAP---DGS--LFVGDF-NLIRRIM----TDGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESH 290 (482)
Q Consensus 221 ~~~~l~~P~giavd~---~G~--lyv~D~-~~I~~i~----~~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~ 290 (482)
....+..|.|++... .|. +||.+. +.|+.+. -+|++.+..-....-.....|+..|...|.|||++. +-
T Consensus 148 ~ss~~s~~YGl~lyrs~ktgd~yvfV~~~qG~~~Qy~l~d~gnGkv~~k~vR~fk~~tQTEG~VaDdEtG~LYIaeE-dv 226 (364)
T COG4247 148 YSSSSSSAYGLALYRSPKTGDYYVFVNRRQGDIAQYKLIDQGNGKVGTKLVRQFKIPTQTEGMVADDETGFLYIAEE-DV 226 (364)
T ss_pred cccCcccceeeEEEecCCcCcEEEEEecCCCceeEEEEEecCCceEcceeeEeeecCCcccceeeccccceEEEeec-cc
Confidence 445677899998754 254 445555 4555443 456665543221111234568888877899999986 57
Q ss_pred EEEEEecC
Q psy8782 291 QILRVKNA 298 (482)
Q Consensus 291 ~I~~~~~~ 298 (482)
.|||+...
T Consensus 227 aiWK~~Ae 234 (364)
T COG4247 227 AIWKYEAE 234 (364)
T ss_pred eeeecccC
Confidence 79999853
No 134
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=61.30 E-value=1.9e+02 Score=29.29 Aligned_cols=68 Identities=19% Similarity=0.368 Sum_probs=43.4
Q ss_pred eecCCccEEEEcCCCCEEEEEC-CcEEEEcC-CCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEec
Q psy8782 223 QRLLAPVALATAPDGSLFVGDF-NLIRRIMT-DGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKN 297 (482)
Q Consensus 223 ~~l~~P~giavd~~G~lyv~D~-~~I~~i~~-~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~ 297 (482)
..+..|...+ +|.||+.+. ..++.+++ +|+..-....... +.......+ . ++.+|+.. ..+.++.++.
T Consensus 101 ~~~~~~~~~~---~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~-~~~~~~~v~-~-~~~v~~~s-~~g~~~al~~ 170 (370)
T COG1520 101 AQLSGPILGS---DGKIYVGSWDGKLYALDASTGTLVWSRNVGGS-PYYASPPVV-G-DGTVYVGT-DDGHLYALNA 170 (370)
T ss_pred eeccCceEEe---CCeEEEecccceEEEEECCCCcEEEEEecCCC-eEEecCcEE-c-CcEEEEec-CCCeEEEEEc
Confidence 4556666665 899999999 56999998 8987655433221 111122222 2 67888775 4677888884
No 135
>PRK05137 tolB translocation protein TolB; Provisional
Probab=60.94 E-value=2.1e+02 Score=29.72 Aligned_cols=65 Identities=20% Similarity=0.187 Sum_probs=34.4
Q ss_pred EEEEcCCCC-EEEE-EC---CcEEEEcCCCeEEEEEeeccCCCCceeeEEEeCCCCeEEEE-eC-CCCEEEEEec
Q psy8782 230 ALATAPDGS-LFVG-DF---NLIRRIMTDGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYIS-DP-ESHQILRVKN 297 (482)
Q Consensus 230 giavd~~G~-lyv~-D~---~~I~~i~~~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVa-D~-~n~~I~~~~~ 297 (482)
..++.|||. |+++ +. ..|+.++.++...+.+.... ......+++|++..|+++ +. +..+|++++.
T Consensus 250 ~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~---~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~ 321 (435)
T PRK05137 250 APRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSP---AIDTSPSYSPDGSQIVFESDRSGSPQLYVMNA 321 (435)
T ss_pred CcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCC---CccCceeEcCCCCEEEEEECCCCCCeEEEEEC
Confidence 456778884 4444 32 35888876543322222111 123346788844455554 32 3457888884
No 136
>PRK03629 tolB translocation protein TolB; Provisional
Probab=60.86 E-value=2.1e+02 Score=29.74 Aligned_cols=64 Identities=25% Similarity=0.219 Sum_probs=37.4
Q ss_pred EEEEcCCCC-EEEEEC----CcEEEEcCCC-eEEEEEeeccCCCCceeeEEEeCCCCeE-EEEeCC-CCEEEEEec
Q psy8782 230 ALATAPDGS-LFVGDF----NLIRRIMTDG-TVRTVVRLNVTRVAYRYHIAYSPLDGTL-YISDPE-SHQILRVKN 297 (482)
Q Consensus 230 giavd~~G~-lyv~D~----~~I~~i~~~G-~v~~~~g~~~~~~~~p~giavd~~~g~l-yVaD~~-n~~I~~~~~ 297 (482)
.+++.|||. |+++.. ..|+.++.++ ++..+... .......+++|++..| |+++.. ..+|++++.
T Consensus 247 ~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~----~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~ 318 (429)
T PRK03629 247 APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDG----RSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNI 318 (429)
T ss_pred CeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCC----CCCcCceEECCCCCEEEEEeCCCCCceEEEEEC
Confidence 467888884 665532 3688888654 44443211 1123457888844445 555543 458888884
No 137
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=60.35 E-value=13 Score=26.79 Aligned_cols=34 Identities=26% Similarity=0.530 Sum_probs=27.3
Q ss_pred ccEEEEcCCCCEEEEEC---------CcEEEEcCCCeEEEEEe
Q psy8782 228 PVALATAPDGSLFVGDF---------NLIRRIMTDGTVRTVVR 261 (482)
Q Consensus 228 P~giavd~~G~lyv~D~---------~~I~~i~~~G~v~~~~g 261 (482)
-+++++.|||.|+++-. ..|.|+++||.+-+.++
T Consensus 3 ~~~~~~q~DGkIlv~G~~~~~~~~~~~~l~Rln~DGsLDttFg 45 (55)
T TIGR02608 3 AYAVAVQSDGKILVAGYVDNSSGNNDFVLARLNADGSLDTTFG 45 (55)
T ss_pred eEEEEECCCCcEEEEEEeecCCCcccEEEEEECCCCCccCCcC
Confidence 35789999999999875 14899999999877664
No 138
>PRK04792 tolB translocation protein TolB; Provisional
Probab=59.15 E-value=2.4e+02 Score=29.66 Aligned_cols=64 Identities=22% Similarity=0.227 Sum_probs=36.5
Q ss_pred EEEEcCCCC-EEEE-EC---CcEEEEcCCC-eEEEEEeeccCCCCceeeEEEeCCCCeEEEE-eC-CCCEEEEEec
Q psy8782 230 ALATAPDGS-LFVG-DF---NLIRRIMTDG-TVRTVVRLNVTRVAYRYHIAYSPLDGTLYIS-DP-ESHQILRVKN 297 (482)
Q Consensus 230 giavd~~G~-lyv~-D~---~~I~~i~~~G-~v~~~~g~~~~~~~~p~giavd~~~g~lyVa-D~-~n~~I~~~~~ 297 (482)
..++.|||. |+++ +. ..|++++.++ ++..+.. . .......+++|++..|+++ +. +..+|++++.
T Consensus 266 ~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~-~---~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl 337 (448)
T PRK04792 266 APRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITR-H---RAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNL 337 (448)
T ss_pred CeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECcc-C---CCCccceEECCCCCEEEEEECCCCCceEEEEEC
Confidence 457788885 6554 33 3588888654 4433321 1 1223456788844456554 32 3467888885
No 139
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=58.98 E-value=21 Score=25.80 Aligned_cols=35 Identities=29% Similarity=0.386 Sum_probs=26.5
Q ss_pred ceEEEeCCCcEEEEEC-----CC----EEEEcCCCcEEEEEcCC
Q psy8782 341 KGVAVSADNILYFADG-----TN----IRMVDRDGIVTTVIGNH 375 (482)
Q Consensus 341 ~giavd~~G~lyvaD~-----~n----Ir~i~~~G~i~ti~G~~ 375 (482)
..|++.+||.|+++-. .+ +.|++++|.+-+-+|..
T Consensus 4 ~~~~~q~DGkIlv~G~~~~~~~~~~~~l~Rln~DGsLDttFg~~ 47 (55)
T TIGR02608 4 YAVAVQSDGKILVAGYVDNSSGNNDFVLARLNADGSLDTTFGTG 47 (55)
T ss_pred EEEEECCCCcEEEEEEeecCCCcccEEEEEECCCCCccCCcCCC
Confidence 5789999999999864 22 77888999886665543
No 140
>KOG0278|consensus
Probab=57.65 E-value=1.9e+02 Score=28.02 Aligned_cols=104 Identities=16% Similarity=0.151 Sum_probs=61.3
Q ss_pred CCceEEEecCCCeEEEEcCCCeEEEEcCCCccccCCCcCCCCCCCceeecCCccEEE---EcCCCCEEEEEC--CcEEEE
Q psy8782 176 SPSGILQKGDGSNIYLKNKPRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALA---TAPDGSLFVGDF--NLIRRI 250 (482)
Q Consensus 176 ~P~gi~~~~~g~~lyi~d~~~~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~gia---vd~~G~lyv~D~--~~I~~i 250 (482)
.+..+-+..+|+-|-+++...++-.-+.+ ++ ....+..|.-|. ..|+-++||+-. -.++|+
T Consensus 186 ~VtSlEvs~dG~ilTia~gssV~Fwdaks----------f~----~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kf 251 (334)
T KOG0278|consen 186 PVTSLEVSQDGRILTIAYGSSVKFWDAKS----------FG----LLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKF 251 (334)
T ss_pred CCcceeeccCCCEEEEecCceeEEecccc----------cc----ceeeccCccccccccccCCCceEEecCcceEEEEE
Confidence 34566666666555555544333322211 10 223344455443 456779999988 578898
Q ss_pred cC-CCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEe
Q psy8782 251 MT-DGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVK 296 (482)
Q Consensus 251 ~~-~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~ 296 (482)
|- .|.-.... ..+.+.--..+.++| +|.+|-+-+..+.|+.+.
T Consensus 252 Dy~TgeEi~~~--nkgh~gpVhcVrFSP-dGE~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 252 DYNTGEEIGSY--NKGHFGPVHCVRFSP-DGELYASGSEDGTIRLWQ 295 (334)
T ss_pred eccCCceeeec--ccCCCCceEEEEECC-CCceeeccCCCceEEEEE
Confidence 83 34332221 122333346788999 999999998888777665
No 141
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=56.95 E-value=15 Score=21.44 Aligned_cols=18 Identities=22% Similarity=0.449 Sum_probs=14.2
Q ss_pred CCceEEEEcCCCcEEEEe
Q psy8782 120 LAPVALATAPDGSLFVGD 137 (482)
Q Consensus 120 ~~P~glavd~~G~lyvaD 137 (482)
+....|+.|++|+|||+-
T Consensus 5 n~I~~i~~D~~G~lWigT 22 (24)
T PF07494_consen 5 NNIYSIYEDSDGNLWIGT 22 (24)
T ss_dssp SCEEEEEE-TTSCEEEEE
T ss_pred CeEEEEEEcCCcCEEEEe
Confidence 356789999999999975
No 142
>PRK12634 flgD flagellar basal body rod modification protein; Reviewed
Probab=55.45 E-value=12 Score=35.53 Aligned_cols=25 Identities=16% Similarity=0.401 Sum_probs=20.1
Q ss_pred eEEEEEcCcccCCceEe-eeEEEEEE
Q psy8782 3 KFTYAWNRLNVYRQRVY-GVTTALVK 27 (482)
Q Consensus 3 ~~~f~w~~~d~y~~~v~-g~~~a~v~ 27 (482)
.|+|.||++|.-|..+. |....+|.
T Consensus 148 ~~~f~WDG~d~~G~~~~~G~Yt~~v~ 173 (221)
T PRK12634 148 EVSFAWDGTDANGNRMAAGKYGVTAT 173 (221)
T ss_pred ceeEEECCCCCCCCcCCCeeeEEEEE
Confidence 48999999999999985 76655553
No 143
>smart00284 OLF Olfactomedin-like domains.
Probab=54.75 E-value=2.1e+02 Score=27.73 Aligned_cols=141 Identities=13% Similarity=0.088 Sum_probs=67.3
Q ss_pred CCCEEEEEC-----CcEEEEcC-----CCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCC
Q psy8782 236 DGSLFVGDF-----NLIRRIMT-----DGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPD 305 (482)
Q Consensus 236 ~G~lyv~D~-----~~I~~i~~-----~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~ 305 (482)
++.+||++. +.++.+.. .|...+.... ...... .|..|- +|.||..-..+..|.|+++. .
T Consensus 34 ~~~~wv~~~~~~~~~~v~ey~~~~~f~~~~~~~~~~L-p~~~~G-tG~VVY--ngslYY~~~~s~~iiKydL~------t 103 (255)
T smart00284 34 KSLYWYMPLNTRVLRSVREYSSMSDFQMGKNPTDHPL-PHAGQG-TGVVVY--NGSLYFNKFNSHDICRFDLT------T 103 (255)
T ss_pred CceEEEEccccCCCcEEEEecCHHHHhccCCceEEEC-CCcccc-ccEEEE--CceEEEEecCCccEEEEECC------C
Confidence 467899875 24555542 3332222211 111222 344443 79999999999999999973 3
Q ss_pred CcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCc--EEEEECC--C--EEEEcCC-CcEEEEEcCCCCC
Q psy8782 306 YNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNI--LYFADGT--N--IRMVDRD-GIVTTVIGNHMHK 378 (482)
Q Consensus 306 g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~--lyvaD~~--n--Ir~i~~~-G~i~ti~G~~~~~ 378 (482)
+.+....--....+.....+...+ ..=-.+|+|.+|. ||-+... + |-|+||+ =.|....-++...
T Consensus 104 ~~v~~~~~Lp~a~y~~~~~Y~~~~--------~sdiDlAvDE~GLWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T~~~k 175 (255)
T smart00284 104 ETYQKEPLLNGAGYNNRFPYAWGG--------FSDIDLAVDENGLWVIYATEQNAGKIVISKLNPATLTIENTWITTYNK 175 (255)
T ss_pred CcEEEEEecCccccccccccccCC--------CccEEEEEcCCceEEEEeccCCCCCEEEEeeCcccceEEEEEEcCCCc
Confidence 443211100000000000000001 1124589998884 5555443 3 5689884 3344444343332
Q ss_pred CC-CCcCCCCceEEecc
Q psy8782 379 SH-WKPIPCEGTLNIEE 394 (482)
Q Consensus 379 ~~-~~~~~~dg~l~v~~ 394 (482)
+. .-++-.=|.||+..
T Consensus 176 ~sa~naFmvCGvLY~~~ 192 (255)
T smart00284 176 RSASNAFMICGILYVTR 192 (255)
T ss_pred ccccccEEEeeEEEEEc
Confidence 21 11222226777755
No 144
>KOG0286|consensus
Probab=53.65 E-value=2.3e+02 Score=27.96 Aligned_cols=139 Identities=16% Similarity=0.158 Sum_probs=71.2
Q ss_pred ceEEEEcC-CCcEEEEeC-C---cEEEEcCCCeEEEEEeeCCCcccCCCccccccccccCCceEEEecC--CCe--EEEE
Q psy8782 122 PVALATAP-DGSLFVGDF-N---LIRRIMTDGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGD--GSN--IYLK 192 (482)
Q Consensus 122 P~glavd~-~G~lyvaD~-~---~Irki~~~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~--g~~--lyi~ 192 (482)
-.+|.+.| +++.||+-. . +|.-+-...-+.++.|... .-.++.+.|+|.++... ... +|=-
T Consensus 189 V~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghes----------DINsv~ffP~G~afatGSDD~tcRlyDl 258 (343)
T KOG0286|consen 189 VMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHES----------DINSVRFFPSGDAFATGSDDATCRLYDL 258 (343)
T ss_pred EEEEecCCCCCCeEEecccccceeeeeccCcceeEeeccccc----------ccceEEEccCCCeeeecCCCceeEEEee
Confidence 45677777 899999876 2 3332222334555554321 11233455666555421 111 2211
Q ss_pred cCCCeEEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC--CcEEEEc-CCCeEEEEEeeccCCCCc
Q psy8782 193 NKPRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF--NLIRRIM-TDGTVRTVVRLNVTRVAY 269 (482)
Q Consensus 193 d~~~~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~--~~I~~i~-~~G~v~~~~g~~~~~~~~ 269 (482)
..++.+.++.... ....-..+++...|.|.++-+ ..+..+| ..|+...++.. .-+.
T Consensus 259 RaD~~~a~ys~~~------------------~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~G---HeNR 317 (343)
T KOG0286|consen 259 RADQELAVYSHDS------------------IICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAG---HENR 317 (343)
T ss_pred cCCcEEeeeccCc------------------ccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeec---cCCe
Confidence 1233344333221 112345789999999999877 5666666 45555544432 2234
Q ss_pred eeeEEEeCCCCeEEEEeCCCCEE
Q psy8782 270 RYHIAYSPLDGTLYISDPESHQI 292 (482)
Q Consensus 270 p~giavd~~~g~lyVaD~~n~~I 292 (482)
-..|.++| +|.-.-+-+....+
T Consensus 318 vScl~~s~-DG~av~TgSWDs~l 339 (343)
T KOG0286|consen 318 VSCLGVSP-DGMAVATGSWDSTL 339 (343)
T ss_pred eEEEEECC-CCcEEEecchhHhe
Confidence 56677777 66555444433333
No 145
>KOG0283|consensus
Probab=53.29 E-value=1.8e+02 Score=32.36 Aligned_cols=113 Identities=15% Similarity=0.083 Sum_probs=68.3
Q ss_pred ccEEEEcC-CCCEEEEEC--CcEEEEc-CCCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCC
Q psy8782 228 PVALATAP-DGSLFVGDF--NLIRRIM-TDGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSA 303 (482)
Q Consensus 228 P~giavd~-~G~lyv~D~--~~I~~i~-~~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~ 303 (482)
-..|++.| |.+-|++-. ++||.++ ++-+|....... ..-+.+++.| +|..-|.-+.++.++.++.
T Consensus 412 VTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~----~lITAvcy~P-dGk~avIGt~~G~C~fY~t------ 480 (712)
T KOG0283|consen 412 VTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR----DLITAVCYSP-DGKGAVIGTFNGYCRFYDT------ 480 (712)
T ss_pred eEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhh----hhheeEEecc-CCceEEEEEeccEEEEEEc------
Confidence 45788888 567777777 8899987 666666554321 2346789999 7888888888888888873
Q ss_pred CCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCC--cEEEEECCC-EEEEcC
Q psy8782 304 PDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADN--ILYFADGTN-IRMVDR 364 (482)
Q Consensus 304 ~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G--~lyvaD~~n-Ir~i~~ 364 (482)
.+.-...... -+ .-.+ . .++=..-.|+.+.+.. .|.|+-... ||++|-
T Consensus 481 -~~lk~~~~~~--I~-------~~~~-K--k~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~ 531 (712)
T KOG0283|consen 481 -EGLKLVSDFH--IR-------LHNK-K--KKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDG 531 (712)
T ss_pred -cCCeEEEeee--Ee-------eccC-c--cccCceeeeeEecCCCCCeEEEecCCCceEEEec
Confidence 2221111000 00 0000 0 1111145666666433 488887777 999975
No 146
>KOG2110|consensus
Probab=52.24 E-value=2.2e+02 Score=29.01 Aligned_cols=63 Identities=24% Similarity=0.304 Sum_probs=42.3
Q ss_pred eeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCc
Q psy8782 271 YHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNI 350 (482)
Q Consensus 271 ~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~ 350 (482)
..||+++ +|.+.-+-+..++|.|+-.. ++|....-.=.|. ...+-..|+|++++.
T Consensus 177 Aalafs~-~G~llATASeKGTVIRVf~v-----~~G~kl~eFRRG~-------------------~~~~IySL~Fs~ds~ 231 (391)
T KOG2110|consen 177 AALAFSP-DGTLLATASEKGTVIRVFSV-----PEGQKLYEFRRGT-------------------YPVSIYSLSFSPDSQ 231 (391)
T ss_pred eEEEECC-CCCEEEEeccCceEEEEEEc-----CCccEeeeeeCCc-------------------eeeEEEEEEECCCCC
Confidence 4689999 99999998888888777643 4555333221111 133456899999998
Q ss_pred EEEEECCC
Q psy8782 351 LYFADGTN 358 (482)
Q Consensus 351 lyvaD~~n 358 (482)
+..+-+..
T Consensus 232 ~L~~sS~T 239 (391)
T KOG2110|consen 232 FLAASSNT 239 (391)
T ss_pred eEEEecCC
Confidence 77666554
No 147
>KOG0285|consensus
Probab=51.99 E-value=2.8e+02 Score=28.28 Aligned_cols=126 Identities=14% Similarity=0.097 Sum_probs=74.3
Q ss_pred ceeecCCccEEEEcCCCCEEEEEC--CcEEEEc-CCCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEec
Q psy8782 221 PKQRLLAPVALATAPDGSLFVGDF--NLIRRIM-TDGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKN 297 (482)
Q Consensus 221 ~~~~l~~P~giavd~~G~lyv~D~--~~I~~i~-~~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~ 297 (482)
....+..-..+++||-+.-|.+.+ ..|..+| ..|++...+ .+....-.+++|++..-.||-+ ....+|..+|+
T Consensus 147 i~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkltl---tGhi~~vr~vavS~rHpYlFs~-gedk~VKCwDL 222 (460)
T KOG0285|consen 147 ISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTL---TGHIETVRGVAVSKRHPYLFSA-GEDKQVKCWDL 222 (460)
T ss_pred hhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEee---cchhheeeeeeecccCceEEEe-cCCCeeEEEec
Confidence 345667788999999544444444 4566666 567665443 2234456789999755555544 45678888885
Q ss_pred CCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEECCC--EEEEcC--CCcEEEEEc
Q psy8782 298 AMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADGTN--IRMVDR--DGIVTTVIG 373 (482)
Q Consensus 298 ~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~~n--Ir~i~~--~G~i~ti~G 373 (482)
.. +..+.-.- ..|..-..+++.|.-.+.++-+.. +|+-|- .-.|.++.|
T Consensus 223 e~-----nkvIR~Yh----------------------GHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~G 275 (460)
T KOG0285|consen 223 EY-----NKVIRHYH----------------------GHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSG 275 (460)
T ss_pred hh-----hhhHHHhc----------------------cccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecC
Confidence 21 11111111 125566778888877777776654 776663 334666665
Q ss_pred CCCC
Q psy8782 374 NHMH 377 (482)
Q Consensus 374 ~~~~ 377 (482)
....
T Consensus 276 H~~~ 279 (460)
T KOG0285|consen 276 HTNP 279 (460)
T ss_pred CCCc
Confidence 5443
No 148
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=50.05 E-value=2.9e+02 Score=27.95 Aligned_cols=133 Identities=18% Similarity=0.231 Sum_probs=69.8
Q ss_pred EEcCCCCEEEEEC-CcEEEEcCCCeEEEEEeec---cCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCc
Q psy8782 232 ATAPDGSLFVGDF-NLIRRIMTDGTVRTVVRLN---VTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYN 307 (482)
Q Consensus 232 avd~~G~lyv~D~-~~I~~i~~~G~v~~~~g~~---~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~ 307 (482)
.++.+|.+|+... ..|.-++++.-........ ...+..| +..+ +|.||+.+... .++.++. .+|+
T Consensus 64 ~~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~--~~~~--~G~i~~g~~~g-~~y~ld~------~~G~ 132 (370)
T COG1520 64 PADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGP--ILGS--DGKIYVGSWDG-KLYALDA------STGT 132 (370)
T ss_pred cEeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCc--eEEe--CCeEEEecccc-eEEEEEC------CCCc
Confidence 4667899999865 6788888765332111000 1223333 3443 78999998765 8888884 3666
Q ss_pred EEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEE-ECCCEEEEcCC-CcEEEEEcCCC---CCCCCC
Q psy8782 308 VEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFA-DGTNIRMVDRD-GIVTTVIGNHM---HKSHWK 382 (482)
Q Consensus 308 ~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyva-D~~nIr~i~~~-G~i~ti~G~~~---~~~~~~ 382 (482)
.....-. .+ . -.+..| ++-.++.+|+. +.+++..++++ |+..-...... ......
T Consensus 133 ~~W~~~~-------------~~--~--~~~~~~---~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~ 192 (370)
T COG1520 133 LVWSRNV-------------GG--S--PYYASP---PVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGS 192 (370)
T ss_pred EEEEEec-------------CC--C--eEEecC---cEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccC
Confidence 4433211 00 0 001111 33357777877 55667777765 77643322221 111223
Q ss_pred cCCCCceEEeccc
Q psy8782 383 PIPCEGTLNIEEV 395 (482)
Q Consensus 383 ~~~~dg~l~v~~~ 395 (482)
+...++.+|+...
T Consensus 193 ~~~~~~~vy~~~~ 205 (370)
T COG1520 193 PAIASGTVYVGSD 205 (370)
T ss_pred ceeecceEEEecC
Confidence 3345666666443
No 149
>KOG0973|consensus
Probab=49.43 E-value=2.3e+02 Score=32.60 Aligned_cols=77 Identities=13% Similarity=0.230 Sum_probs=51.3
Q ss_pred eeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCc-EEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCC
Q psy8782 271 YHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYN-VEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADN 349 (482)
Q Consensus 271 ~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~-~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G 349 (482)
..++.+| ++.+.++-...++|..++.. ... ++++ ++....+.|+++||-|
T Consensus 133 ~Dv~Wsp-~~~~lvS~s~DnsViiwn~~------tF~~~~vl----------------------~~H~s~VKGvs~DP~G 183 (942)
T KOG0973|consen 133 LDVNWSP-DDSLLVSVSLDNSVIIWNAK------TFELLKVL----------------------RGHQSLVKGVSWDPIG 183 (942)
T ss_pred ceeccCC-CccEEEEecccceEEEEccc------cceeeeee----------------------ecccccccceEECCcc
Confidence 4678888 89999999888999988842 221 2222 2235578999999999
Q ss_pred cEEEEECCC----EEEEcCCCcEEEEEcCCC
Q psy8782 350 ILYFADGTN----IRMVDRDGIVTTVIGNHM 376 (482)
Q Consensus 350 ~lyvaD~~n----Ir~i~~~G~i~ti~G~~~ 376 (482)
..+-+-+.. |.+.+..|...++.+.-.
T Consensus 184 ky~ASqsdDrtikvwrt~dw~i~k~It~pf~ 214 (942)
T KOG0973|consen 184 KYFASQSDDRTLKVWRTSDWGIEKSITKPFE 214 (942)
T ss_pred CeeeeecCCceEEEEEcccceeeEeeccchh
Confidence 865554443 445455677666655433
No 150
>PRK06655 flgD flagellar basal body rod modification protein; Reviewed
Probab=48.99 E-value=18 Score=34.31 Aligned_cols=26 Identities=12% Similarity=0.253 Sum_probs=20.7
Q ss_pred eEEEEEcCcccCCceE-eeeEEEEEEE
Q psy8782 3 KFTYAWNRLNVYRQRV-YGVTTALVKV 28 (482)
Q Consensus 3 ~~~f~w~~~d~y~~~v-~g~~~a~v~v 28 (482)
.++|.||++|.-|..+ .|....+|+.
T Consensus 152 ~~~f~WDG~d~~G~~lp~G~Yt~~V~A 178 (225)
T PRK06655 152 VVSFTWDGTDTDGNALPDGNYTIKASA 178 (225)
T ss_pred ceeEEECCCCCCCCcCCCeeEEEEEEE
Confidence 3789999999999987 6777666653
No 151
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=44.99 E-value=4.9e+02 Score=29.65 Aligned_cols=159 Identities=14% Similarity=0.090 Sum_probs=81.1
Q ss_pred ccCCCceEEEEcC-CCcEEEEeC---CcEEEEcCC-CeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEE
Q psy8782 117 QRLLAPVALATAP-DGSLFVGDF---NLIRRIMTD-GTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYL 191 (482)
Q Consensus 117 ~~l~~P~glavd~-~G~lyvaD~---~~Irki~~~-G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi 191 (482)
++...|.-+-+.. +-++.+-|. +.|.++|.+ |+|..-+......--.+-++....+.+. |....+--+.+.||.
T Consensus 478 g~~~~P~k~mL~~~d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt-~e~tflGls~n~lfr 556 (794)
T PF08553_consen 478 GKNFTPKKAMLHDQDRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLT-NEQTFLGLSDNSLFR 556 (794)
T ss_pred CcccCcchhhhhccccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccC-CCceEEEECCCceEE
Confidence 3445566655544 455767664 789999875 8887766543211000001112222211 333333333445555
Q ss_pred EcCC--CeEEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC-CcEEEEcCCCeEEEEEeeccCCCC
Q psy8782 192 KNKP--RIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF-NLIRRIMTDGTVRTVVRLNVTRVA 268 (482)
Q Consensus 192 ~d~~--~~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~-~~I~~i~~~G~v~~~~g~~~~~~~ 268 (482)
-|.- + -+++...+.. + .... .=..+|.+.+|.|-|+.. +.||-++..|+- +.+....+.
T Consensus 557 iDpR~~~-~k~v~~~~k~-------Y----~~~~---~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~---AKT~lp~lG 618 (794)
T PF08553_consen 557 IDPRLSG-NKLVDSQSKQ-------Y----SSKN---NFSCFATTEDGYIAVGSNKGDIRLYDRLGKR---AKTALPGLG 618 (794)
T ss_pred eccCCCC-Cceeeccccc-------c----ccCC---CceEEEecCCceEEEEeCCCcEEeecccchh---hhhcCCCCC
Confidence 5531 1 0011111100 0 0111 123678889999999999 899999977632 222222334
Q ss_pred ce-eeEEEeCCCCeEEEEeCCCCEEEEEe
Q psy8782 269 YR-YHIAYSPLDGTLYISDPESHQILRVK 296 (482)
Q Consensus 269 ~p-~giavd~~~g~lyVaD~~n~~I~~~~ 296 (482)
.| .+|.++. +|.-.++-..+ .+..++
T Consensus 619 ~pI~~iDvt~-DGkwilaTc~t-yLlLi~ 645 (794)
T PF08553_consen 619 DPIIGIDVTA-DGKWILATCKT-YLLLID 645 (794)
T ss_pred CCeeEEEecC-CCcEEEEeecc-eEEEEE
Confidence 44 5899988 77655555443 344443
No 152
>PF07202 Tcp10_C: T-complex protein 10 C-terminus; InterPro: IPR009852 Proteins in this entry include T-complex 10, involved in spermatogenesis in mice, and centromere protein J, which not only inhibits microtubule nucleation from the centrosome, but also depolymerises taxol-stabilised microtubules [, ]. These proteins share an approximately 180 residue C-terminal region which contains unsual G repreats [].
Probab=44.40 E-value=2.5e+02 Score=25.62 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=11.3
Q ss_pred CCCcEEEEEC-CCEEEEcCCCcE
Q psy8782 347 ADNILYFADG-TNIRMVDRDGIV 368 (482)
Q Consensus 347 ~~G~lyvaD~-~nIr~i~~~G~i 368 (482)
++|.--..-+ +++|.-|++|.+
T Consensus 152 ~dG~qet~y~~gr~r~kd~~g~~ 174 (179)
T PF07202_consen 152 PDGRQETRYASGRVRIKDKDGNV 174 (179)
T ss_pred cCCCEEEEeCCCcEEEecCCCCE
Confidence 4444333322 336666677765
No 153
>KOG0303|consensus
Probab=44.36 E-value=2.7e+02 Score=28.65 Aligned_cols=31 Identities=29% Similarity=0.362 Sum_probs=23.3
Q ss_pred eEEEEcCCCcEEEEeC--CcEEEEcCC-CeEEEE
Q psy8782 123 VALATAPDGSLFVGDF--NLIRRIMTD-GTVRTV 153 (482)
Q Consensus 123 ~glavd~~G~lyvaD~--~~Irki~~~-G~v~ti 153 (482)
+.+.+..||+++++-. .+||.+++. |++...
T Consensus 177 ~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e 210 (472)
T KOG0303|consen 177 YSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSE 210 (472)
T ss_pred EEEEeccCCceeeeecccceeEEEcCCCCcEeee
Confidence 4567778999988877 789999884 666543
No 154
>KOG1539|consensus
Probab=43.80 E-value=5.3e+02 Score=29.23 Aligned_cols=66 Identities=17% Similarity=0.194 Sum_probs=44.6
Q ss_pred CccEEEEcCCCCEEEEEC--CcEEEEc-CCCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEe
Q psy8782 227 APVALATAPDGSLFVGDF--NLIRRIM-TDGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVK 296 (482)
Q Consensus 227 ~P~giavd~~G~lyv~D~--~~I~~i~-~~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~ 296 (482)
.-.++++.|||.-.++-. ..||.+| |.|...-.+.... -+..|.++|..+.|-.+-.+.+-|+-+.
T Consensus 578 ritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~----~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 578 RITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDS----PCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred ceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCC----cceeeEECCCCCEEEEEEecCceEEEEE
Confidence 567899999996555444 7999998 8887776655422 2456888884445555555556676665
No 155
>KOG0282|consensus
Probab=43.26 E-value=4.2e+02 Score=27.97 Aligned_cols=136 Identities=10% Similarity=0.154 Sum_probs=80.4
Q ss_pred cEEEEcCCCCEEEEEC--CcEEEEc-CCCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCC
Q psy8782 229 VALATAPDGSLFVGDF--NLIRRIM-TDGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPD 305 (482)
Q Consensus 229 ~giavd~~G~lyv~D~--~~I~~i~-~~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~ 305 (482)
..++...+|.=|.+-. ..|+-+| ..|++..-+.++ .-|+.+-+.|++.+++++-..+.+|+.+|. ..
T Consensus 262 rd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~----~~~~cvkf~pd~~n~fl~G~sd~ki~~wDi------Rs 331 (503)
T KOG0282|consen 262 RDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLD----KVPTCVKFHPDNQNIFLVGGSDKKIRQWDI------RS 331 (503)
T ss_pred hhhhccccCCeeeeeecceeeeeeccccceEEEEEecC----CCceeeecCCCCCcEEEEecCCCcEEEEec------cc
Confidence 3566677776666655 4566666 568877766432 247889999955599999999999999994 23
Q ss_pred CcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEECC--CEEEEcCC-C-cEEEEEcCCCCCCCC
Q psy8782 306 YNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADGT--NIRMVDRD-G-IVTTVIGNHMHKSHW 381 (482)
Q Consensus 306 g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~~--nIr~i~~~-G-~i~ti~G~~~~~~~~ 381 (482)
|.+. ..-...|..-..|.|-++|.=||+-+. ++|+.+-. + -+.-++-.....-..
T Consensus 332 ~kvv---------------------qeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~ 390 (503)
T KOG0282|consen 332 GKVV---------------------QEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPC 390 (503)
T ss_pred hHHH---------------------HHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcc
Confidence 3211 011223555667888788877776554 46666421 1 133333222222112
Q ss_pred CcCCCCceEEeccc
Q psy8782 382 KPIPCEGTLNIEEV 395 (482)
Q Consensus 382 ~~~~~dg~l~v~~~ 395 (482)
..+.+.+..+++|.
T Consensus 391 ~~~~P~~~~~~aQs 404 (503)
T KOG0282|consen 391 LTLHPNGKWFAAQS 404 (503)
T ss_pred eecCCCCCeehhhc
Confidence 33445555556554
No 156
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=42.05 E-value=3.3e+02 Score=29.56 Aligned_cols=129 Identities=14% Similarity=0.128 Sum_probs=71.2
Q ss_pred eEEEEcCCCeEEEEcCCCccccCCCcCCCCCCCceeec-CCccEEEEcCCCCEEEEECCcEEEEcCCCeEEEEEeeccCC
Q psy8782 188 NIYLKNKPRIIKTTLGDGHQRPLDCKDCNGEAGPKQRL-LAPVALATAPDGSLFVGDFNLIRRIMTDGTVRTVVRLNVTR 266 (482)
Q Consensus 188 ~lyi~d~~~~i~~~~g~G~~~~~~~~~~~g~~~~~~~l-~~P~giavd~~G~lyv~D~~~I~~i~~~G~v~~~~g~~~~~ 266 (482)
.+||+...+....-.++|+....+ ...+ ..-..++.|-.|.|||....-|++.++.|.-..-. .
T Consensus 177 ~lWvgT~dGL~~fd~~~gkalql~----------s~~~dk~I~al~~d~qg~LWVGTdqGv~~~e~~G~~~sn~-----~ 241 (671)
T COG3292 177 RLWVGTPDGLSYFDAGRGKALQLA----------SPPLDKAINALIADVQGRLWVGTDQGVYLQEAEGWRASNW-----G 241 (671)
T ss_pred cEEEecCCcceEEccccceEEEcC----------CCcchhhHHHHHHHhcCcEEEEeccceEEEchhhcccccc-----C
Confidence 677766666655555555543221 1112 22345677888999999999999998888322111 1
Q ss_pred CCceee----EEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcce
Q psy8782 267 VAYRYH----IAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKG 342 (482)
Q Consensus 267 ~~~p~g----iavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~g 342 (482)
...|.+ +.-|. .|++||.-. |+..+-.. +++.+.+-. +...-.+..-.+
T Consensus 242 ~~lp~~~I~ll~qD~-qG~lWiGTe-nGl~r~~l-------~rq~Lq~~~------------------~~~~l~~S~vns 294 (671)
T COG3292 242 PMLPSGNILLLVQDA-QGELWIGTE-NGLWRTRL-------PRQGLQIPL------------------SKMHLGVSTVNS 294 (671)
T ss_pred CCCcchheeeeeccc-CCCEEEeec-ccceeEec-------CCCCccccc------------------cccCCccccccc
Confidence 122333 33354 789999764 33332222 222221110 000111344567
Q ss_pred EEEeCCCcEEEEECCC
Q psy8782 343 VAVSADNILYFADGTN 358 (482)
Q Consensus 343 iavd~~G~lyvaD~~n 358 (482)
+..|.+|+|++.+.+.
T Consensus 295 L~~D~dGsLWv~t~~g 310 (671)
T COG3292 295 LWLDTDGSLWVGTYGG 310 (671)
T ss_pred eeeccCCCEeeeccCc
Confidence 8889999999988876
No 157
>KOG0319|consensus
Probab=41.76 E-value=5.4e+02 Score=28.71 Aligned_cols=145 Identities=12% Similarity=0.062 Sum_probs=82.5
Q ss_pred EEEcCCCcEEEEeC-CcEEEEcC-CCeEE-EEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCCCeEEEE
Q psy8782 125 LATAPDGSLFVGDF-NLIRRIMT-DGTVR-TVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKPRIIKTT 201 (482)
Q Consensus 125 lavd~~G~lyvaD~-~~Irki~~-~G~v~-ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~~~i~~~ 201 (482)
++++++|...++-. ++|-.++. +|.+. ....... ...-..+++.+|++.|+.+...+.++.+
T Consensus 25 ~~~s~nG~~L~t~~~d~Vi~idv~t~~~~l~s~~~ed---------------~d~ita~~l~~d~~~L~~a~rs~llrv~ 89 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGDRVIIIDVATGSIALPSGSNED---------------EDEITALALTPDEEVLVTASRSQLLRVW 89 (775)
T ss_pred eeECCCCCEEEEecCceEEEEEccCCceecccCCccc---------------hhhhheeeecCCccEEEEeeccceEEEE
Confidence 78999998666555 88888864 56664 1111100 1123567778888888888888877766
Q ss_pred c-CCCccccCCCcCCCCCCCceeecCCc-cEEEEcCCCCEEEEEC--CcEEEEcCCCeEEE-EE-eeccCCCCceeeEEE
Q psy8782 202 L-GDGHQRPLDCKDCNGEAGPKQRLLAP-VALATAPDGSLFVGDF--NLIRRIMTDGTVRT-VV-RLNVTRVAYRYHIAY 275 (482)
Q Consensus 202 ~-g~G~~~~~~~~~~~g~~~~~~~l~~P-~giavd~~G~lyv~D~--~~I~~i~~~G~v~~-~~-g~~~~~~~~p~giav 275 (482)
. .+|+.... -.+.-..| ..|+++|.|.|.-+-. ++++++|-.+...+ .+ |. ..--..+.+
T Consensus 90 ~L~tgk~irs----------wKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~----gGvVssl~F 155 (775)
T KOG0319|consen 90 SLPTGKLIRS----------WKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGH----GGVVSSLLF 155 (775)
T ss_pred EcccchHhHh----------HhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCC----CceEEEEEe
Confidence 4 34443210 01112345 4789999885554444 89999986554333 22 21 111244566
Q ss_pred eCCCC-eEEEEeCCCCEEEEEecC
Q psy8782 276 SPLDG-TLYISDPESHQILRVKNA 298 (482)
Q Consensus 276 d~~~g-~lyVaD~~n~~I~~~~~~ 298 (482)
.|... .|.++-...++|+.++..
T Consensus 156 ~~~~~~~lL~sg~~D~~v~vwnl~ 179 (775)
T KOG0319|consen 156 HPHWNRWLLASGATDGTVRVWNLN 179 (775)
T ss_pred CCccchhheeecCCCceEEEEEcc
Confidence 55322 344555556677766653
No 158
>KOG0640|consensus
Probab=41.04 E-value=3.8e+02 Score=26.77 Aligned_cols=130 Identities=12% Similarity=0.141 Sum_probs=67.7
Q ss_pred ccEEEEcCCCCEEEEEC--CcEEEEc-CCCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCC
Q psy8782 228 PVALATAPDGSLFVGDF--NLIRRIM-TDGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAP 304 (482)
Q Consensus 228 P~giavd~~G~lyv~D~--~~I~~i~-~~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~ 304 (482)
-..+-..+.|+|||+-+ +.|+.+| -.++.++.++... .-..-....+.. ++....+......|..+.. .
T Consensus 264 i~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH-~gsevcSa~Ftk-n~kyiLsSG~DS~vkLWEi------~ 335 (430)
T KOG0640|consen 264 ITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAH-GGSEVCSAVFTK-NGKYILSSGKDSTVKLWEI------S 335 (430)
T ss_pred eeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhc-CCceeeeEEEcc-CCeEEeecCCcceeeeeee------c
Confidence 34566778999999998 7888886 3333333333211 111223344544 5544444333344444443 2
Q ss_pred CC-cEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCC---cEEEEECCC---EEEE--cCCCcEEEEEcC
Q psy8782 305 DY-NVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADN---ILYFADGTN---IRMV--DRDGIVTTVIGN 374 (482)
Q Consensus 305 ~g-~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G---~lyvaD~~n---Ir~i--~~~G~i~ti~G~ 374 (482)
+| .+....|.|.. |.-..+++|.|++-..-.+-+|. .|.-=|+.+ +++. ..+|.+..+.-+
T Consensus 336 t~R~l~~YtGAg~t---------grq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HS 405 (430)
T KOG0640|consen 336 TGRMLKEYTGAGTT---------GRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHS 405 (430)
T ss_pred CCceEEEEecCCcc---------cchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeC
Confidence 33 35555665432 22235677888887776655542 344445554 2222 346666666543
No 159
>PRK01029 tolB translocation protein TolB; Provisional
Probab=40.04 E-value=4.5e+02 Score=27.35 Aligned_cols=66 Identities=18% Similarity=0.143 Sum_probs=35.5
Q ss_pred cEEEEcCCCC-EEE-EEC---CcEEEEcCC--CeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeC--CCCEEEEEec
Q psy8782 229 VALATAPDGS-LFV-GDF---NLIRRIMTD--GTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDP--ESHQILRVKN 297 (482)
Q Consensus 229 ~giavd~~G~-lyv-~D~---~~I~~i~~~--G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~--~n~~I~~~~~ 297 (482)
...++.|||. |++ ++. .+|++++.+ +...+.+.... ......+++|++..|+++.. +..+|+.++.
T Consensus 284 ~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~---~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl 358 (428)
T PRK01029 284 GNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKY---RNSSCPAWSPDGKKIAFCSVIKGVRQICVYDL 358 (428)
T ss_pred CCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCC---CCccceeECCCCCEEEEEEcCCCCcEEEEEEC
Confidence 3467889985 444 444 367777643 32222221111 12245678995455665533 2457888885
No 160
>PRK05842 flgD flagellar basal body rod modification protein; Reviewed
Probab=39.41 E-value=25 Score=34.70 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=19.9
Q ss_pred eEEEEEcCcccCCceEe-eeEEEEEE
Q psy8782 3 KFTYAWNRLNVYRQRVY-GVTTALVK 27 (482)
Q Consensus 3 ~~~f~w~~~d~y~~~v~-g~~~a~v~ 27 (482)
.++|.||++|.-|.++. |.....|+
T Consensus 194 ~~~f~WDG~d~~G~~~p~G~Yt~~V~ 219 (295)
T PRK05842 194 YINFEWDGLNEKGEKVPKGNYKIKAE 219 (295)
T ss_pred ceeEEECCCCCCCCcCCCcceEEEEE
Confidence 36899999999999984 76665554
No 161
>PRK00178 tolB translocation protein TolB; Provisional
Probab=39.10 E-value=4.5e+02 Score=27.06 Aligned_cols=64 Identities=27% Similarity=0.189 Sum_probs=34.9
Q ss_pred EEEEcCCCC-EEEEE-C---CcEEEEcCCC-eEEEEEeeccCCCCceeeEEEeCCCCeEEEE-eC-CCCEEEEEec
Q psy8782 230 ALATAPDGS-LFVGD-F---NLIRRIMTDG-TVRTVVRLNVTRVAYRYHIAYSPLDGTLYIS-DP-ESHQILRVKN 297 (482)
Q Consensus 230 giavd~~G~-lyv~D-~---~~I~~i~~~G-~v~~~~g~~~~~~~~p~giavd~~~g~lyVa-D~-~n~~I~~~~~ 297 (482)
..++.|||. |+++- . ..|++++.++ ....+.. .. ......+++|++..|+++ +. +..+|++++.
T Consensus 247 ~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~-~~---~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~ 318 (430)
T PRK00178 247 APAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTN-HP---AIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNV 318 (430)
T ss_pred CeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEccc-CC---CCcCCeEECCCCCEEEEEECCCCCceEEEEEC
Confidence 356778874 54433 2 3688888654 3333321 11 122345678844566554 43 3457888875
No 162
>KOG3881|consensus
Probab=38.84 E-value=3.1e+02 Score=28.16 Aligned_cols=109 Identities=14% Similarity=-0.017 Sum_probs=61.5
Q ss_pred ceEEEEcCC--CcEEEEeC--CcEEEEcCCCeEEEEEeeCCCcccCCCccccccccccCC-ceEEEecCCCeEEEEcCCC
Q psy8782 122 PVALATAPD--GSLFVGDF--NLIRRIMTDGTVRTVVRLKNQKFEKFPKILTSCFLSLSP-SGILQKGDGSNIYLKNKPR 196 (482)
Q Consensus 122 P~glavd~~--G~lyvaD~--~~Irki~~~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P-~gi~~~~~g~~lyi~d~~~ 196 (482)
++++.+-+. ..-|++-+ |.+|..|+.-+-..++.. ...-+| +.+...++++.||+++..+
T Consensus 205 ~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~f---------------d~~E~~is~~~l~p~gn~Iy~gn~~g 269 (412)
T KOG3881|consen 205 ITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQF---------------DFLENPISSTGLTPSGNFIYTGNTKG 269 (412)
T ss_pred eccceecCCCCCceEEEEecceeEEEecCcccCcceeEe---------------ccccCcceeeeecCCCcEEEEecccc
Confidence 344444443 45666665 788888876433333221 111223 4566778888999999888
Q ss_pred eEEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC--CcEEEEcCC
Q psy8782 197 IIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF--NLIRRIMTD 253 (482)
Q Consensus 197 ~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~--~~I~~i~~~ 253 (482)
.+..+...+.....- . ....--++.+|.++|.+-+.-+.. ..+|.+|..
T Consensus 270 ~l~~FD~r~~kl~g~--~------~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~k 320 (412)
T KOG3881|consen 270 QLAKFDLRGGKLLGC--G------LKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIK 320 (412)
T ss_pred hhheecccCceeecc--c------cCCccCCcceEEEcCCCceEEeeccceeEEEeecc
Confidence 777776554432210 0 011112678899998766555544 345555543
No 163
>PRK12812 flgD flagellar basal body rod modification protein; Reviewed
Probab=38.76 E-value=32 Score=33.34 Aligned_cols=25 Identities=20% Similarity=0.154 Sum_probs=20.6
Q ss_pred eEEEEEcCcccCCceE-eeeEEEEEE
Q psy8782 3 KFTYAWNRLNVYRQRV-YGVTTALVK 27 (482)
Q Consensus 3 ~~~f~w~~~d~y~~~v-~g~~~a~v~ 27 (482)
.++|.||++|.-|..+ -|....+|+
T Consensus 167 ~~~f~WDG~d~~G~~~~~G~Yt~~v~ 192 (259)
T PRK12812 167 LFTMEWDGRDNDGVYAGDGEYTIKAV 192 (259)
T ss_pred ceeEEECCCCCCCCcCCCeeeEEEEE
Confidence 4789999999999987 487766665
No 164
>PRK12633 flgD flagellar basal body rod modification protein; Provisional
Probab=37.34 E-value=30 Score=32.94 Aligned_cols=25 Identities=24% Similarity=0.209 Sum_probs=18.9
Q ss_pred eEEEEEcCcccCCceE-eeeEEEEEE
Q psy8782 3 KFTYAWNRLNVYRQRV-YGVTTALVK 27 (482)
Q Consensus 3 ~~~f~w~~~d~y~~~v-~g~~~a~v~ 27 (482)
.++|.||++|.-|.++ -|.....|+
T Consensus 155 ~~~f~WDG~d~~G~~~~~G~Y~~~V~ 180 (230)
T PRK12633 155 VHTLQWDGNNDGGQPLADGKYSITVS 180 (230)
T ss_pred ceeEEECCCCCCCCcCCCcceEEEEE
Confidence 4799999999999986 465554443
No 165
>KOG0645|consensus
Probab=36.40 E-value=4.2e+02 Score=25.95 Aligned_cols=124 Identities=19% Similarity=0.099 Sum_probs=77.3
Q ss_pred cCCccEEEEcCC-CCEEEEEC--CcEEEEcCCC-e---EEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEec
Q psy8782 225 LLAPVALATAPD-GSLFVGDF--NLIRRIMTDG-T---VRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKN 297 (482)
Q Consensus 225 l~~P~giavd~~-G~lyv~D~--~~I~~i~~~G-~---v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~ 297 (482)
..+-+.+|..|- |.|+-+-. ..||..+..+ . ..+++. ...-..-..+|.+| .|++..+-+....+..+..
T Consensus 14 ~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld--~~hkrsVRsvAwsp-~g~~La~aSFD~t~~Iw~k 90 (312)
T KOG0645|consen 14 KDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLD--DGHKRSVRSVAWSP-HGRYLASASFDATVVIWKK 90 (312)
T ss_pred CCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEecc--ccchheeeeeeecC-CCcEEEEeeccceEEEeec
Confidence 335678999986 77776666 6788887663 2 222221 12223457799999 7776666665555555542
Q ss_pred CCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEECCC----EEEEcCCCcEEEEEc
Q psy8782 298 AMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADGTN----IRMVDRDGIVTTVIG 373 (482)
Q Consensus 298 ~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~~n----Ir~i~~~G~i~ti~G 373 (482)
.++..+.++- .++.=+.-+++|+.++|++.-+-+.. |..++.++++..++=
T Consensus 91 ------~~~efecv~~-------------------lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aV 145 (312)
T KOG0645|consen 91 ------EDGEFECVAT-------------------LEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAV 145 (312)
T ss_pred ------CCCceeEEee-------------------eeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEee
Confidence 3566665542 11223556899999999866554433 888888888776653
Q ss_pred CCC
Q psy8782 374 NHM 376 (482)
Q Consensus 374 ~~~ 376 (482)
...
T Consensus 146 L~~ 148 (312)
T KOG0645|consen 146 LQE 148 (312)
T ss_pred ecc
Confidence 333
No 166
>KOG0303|consensus
Probab=36.38 E-value=5e+02 Score=26.81 Aligned_cols=68 Identities=15% Similarity=0.230 Sum_probs=44.9
Q ss_pred EEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCc---ceEEEeCCC
Q psy8782 273 IAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYP---KGVAVSADN 349 (482)
Q Consensus 273 iavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P---~giavd~~G 349 (482)
++.+|...++..+-...+.|..++. .+|...+- |.+| ..|.+..+|
T Consensus 137 V~wHPtA~NVLlsag~Dn~v~iWnv------~tgeali~-------------------------l~hpd~i~S~sfn~dG 185 (472)
T KOG0303|consen 137 VQWHPTAPNVLLSAGSDNTVSIWNV------GTGEALIT-------------------------LDHPDMVYSMSFNRDG 185 (472)
T ss_pred EeecccchhhHhhccCCceEEEEec------cCCceeee-------------------------cCCCCeEEEEEeccCC
Confidence 5566766677777777778877774 12221111 2233 467888999
Q ss_pred cEEEEECCC--EEEEcC-CCcEEEE
Q psy8782 350 ILYFADGTN--IRMVDR-DGIVTTV 371 (482)
Q Consensus 350 ~lyvaD~~n--Ir~i~~-~G~i~ti 371 (482)
.++++-... ||++|+ .|++..-
T Consensus 186 s~l~TtckDKkvRv~dpr~~~~v~e 210 (472)
T KOG0303|consen 186 SLLCTTCKDKKVRVIDPRRGTVVSE 210 (472)
T ss_pred ceeeeecccceeEEEcCCCCcEeee
Confidence 999988765 999997 6776544
No 167
>KOG0293|consensus
Probab=36.27 E-value=5.2e+02 Score=26.91 Aligned_cols=111 Identities=17% Similarity=0.119 Sum_probs=59.1
Q ss_pred CccEEEEcCCCCEEEEEC----CcEEEEcCCCeE---EEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCC
Q psy8782 227 APVALATAPDGSLFVGDF----NLIRRIMTDGTV---RTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAM 299 (482)
Q Consensus 227 ~P~giavd~~G~lyv~D~----~~I~~i~~~G~v---~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~ 299 (482)
.-+-+.+.++|.-.-+-+ .-|+.+.+++.+ .|..|- -..-.+|..+| +++-.++-...-.+..++.
T Consensus 226 EVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh----~~~V~yi~wSP-DdryLlaCg~~e~~~lwDv-- 298 (519)
T KOG0293|consen 226 EVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGH----SQPVSYIMWSP-DDRYLLACGFDEVLSLWDV-- 298 (519)
T ss_pred cEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecc----cCceEEEEECC-CCCeEEecCchHheeeccC--
Confidence 344566666664333222 236667778773 333332 22346788999 5555555444445666664
Q ss_pred ccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEECCC--EEEEcCCCcE
Q psy8782 300 DFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADGTN--IRMVDRDGIV 368 (482)
Q Consensus 300 ~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~~n--Ir~i~~~G~i 368 (482)
.+|.....-+. + .-..+...|--|||.=+|+.+.. |-..+.||.+
T Consensus 299 ----~tgd~~~~y~~--------------~------~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~ 345 (519)
T KOG0293|consen 299 ----DTGDLRHLYPS--------------G------LGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI 345 (519)
T ss_pred ----Ccchhhhhccc--------------C------cCCCcceeEEccCCceeEecCCCCcEEEecCCcch
Confidence 22322221111 1 01345566666777777776644 7777778776
No 168
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=35.85 E-value=4.8e+02 Score=26.44 Aligned_cols=198 Identities=20% Similarity=0.244 Sum_probs=0.0
Q ss_pred CCCceEEEEcCCCc-EEEEeC---CcEEEEcCC-CeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEc
Q psy8782 119 LLAPVALATAPDGS-LFVGDF---NLIRRIMTD-GTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKN 193 (482)
Q Consensus 119 l~~P~glavd~~G~-lyvaD~---~~Irki~~~-G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d 193 (482)
+..+.-+++.+||. +||... ..|-.+|.. +++...+.. |-...+.+.+
T Consensus 94 ~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~--------------------PGC~~iyP~~------- 146 (342)
T PF06433_consen 94 VPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT--------------------PGCWLIYPSG------- 146 (342)
T ss_dssp S--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG--------------------TSEEEEEEEE-------
T ss_pred cccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC--------------------CCEEEEEecC-------
Q ss_pred CCCeEEEEcCCCccccCCCcCCCCCCCceeecCCc-------cEEEEcCCCCEEEEEC-CcEEEEcCCCeEEEEEeeccC
Q psy8782 194 KPRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAP-------VALATAPDGSLFVGDF-NLIRRIMTDGTVRTVVRLNVT 265 (482)
Q Consensus 194 ~~~~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P-------~giavd~~G~lyv~D~-~~I~~i~~~G~v~~~~g~~~~ 265 (482)
++....+.++|.......+..+-.......+..| ........+.+|+..+ ++|+-++-.|....+......
T Consensus 147 -~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~ 225 (342)
T PF06433_consen 147 -NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSL 225 (342)
T ss_dssp -TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEES
T ss_pred -CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccc
Q ss_pred ----------CCCceeeEEEeCCCCeEEEEe--------------------CCCCEEEEEecCCccCCCCCcEEEEecCC
Q psy8782 266 ----------RVAYRYHIAYSPLDGTLYISD--------------------PESHQILRVKNAMDFSAPDYNVEPAVGSG 315 (482)
Q Consensus 266 ----------~~~~p~giavd~~~g~lyVaD--------------------~~n~~I~~~~~~~~~~~~~g~~~~vaG~g 315 (482)
.+..=.-+|+++..+.|||.- ....||.|+. ....+.-+.
T Consensus 226 ~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~-------l~~~~~Si~--- 295 (342)
T PF06433_consen 226 LTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIP-------LEHPIDSIA--- 295 (342)
T ss_dssp S-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEE-------EEEEESEEE---
T ss_pred cCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEe-------CCCccceEE---
Q ss_pred cccCCCCCCccCCCccccccccCCcceEEEeC-CCcEEEEECCC---EEEEcCCCcEEEEE
Q psy8782 316 ERCLPGDEAHCGDGAPARDAKLAYPKGVAVSA-DNILYFADGTN---IRMVDRDGIVTTVI 372 (482)
Q Consensus 316 ~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~-~G~lyvaD~~n---Ir~i~~~G~i~ti~ 372 (482)
...|. .|.=++++. ++.|+|-|... +|+++.=|.-.+++
T Consensus 296 ---------Vsqd~---------~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG~~~~l~ 338 (342)
T PF06433_consen 296 ---------VSQDD---------KPLLYALSAGDGTLDVYDAATGKLVRSIEQLGETPTLI 338 (342)
T ss_dssp ---------EESSS---------S-EEEEEETTTTEEEEEETTT--EEEEE---SSS--EE
T ss_pred ---------EccCC---------CcEEEEEcCCCCeEEEEeCcCCcEEeehhccCCCceEE
No 169
>PTZ00421 coronin; Provisional
Probab=35.59 E-value=5.8e+02 Score=27.28 Aligned_cols=112 Identities=11% Similarity=0.111 Sum_probs=0.0
Q ss_pred eEEEEcC-CCcEEEEeC--CcEEEEcCCCe---------EEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEE
Q psy8782 123 VALATAP-DGSLFVGDF--NLIRRIMTDGT---------VRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIY 190 (482)
Q Consensus 123 ~glavd~-~G~lyvaD~--~~Irki~~~G~---------v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~ly 190 (482)
.++++.| +++++++-. +.|+.++.... +.++.+...
T Consensus 79 ~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~-------------------------------- 126 (493)
T PTZ00421 79 IDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTK-------------------------------- 126 (493)
T ss_pred EEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCC--------------------------------
Q ss_pred EEcCCCeEEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcCCC-CEEEEEC--CcEEEEc-CCCeEEEEEeeccCC
Q psy8782 191 LKNKPRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDG-SLFVGDF--NLIRRIM-TDGTVRTVVRLNVTR 266 (482)
Q Consensus 191 i~d~~~~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G-~lyv~D~--~~I~~i~-~~G~v~~~~g~~~~~ 266 (482)
....|++.|++ +++++-. +.|+.++ ..++....+ ...
T Consensus 127 ------------------------------------~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l---~~h 167 (493)
T PTZ00421 127 ------------------------------------KVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVI---KCH 167 (493)
T ss_pred ------------------------------------cEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEE---cCC
Q ss_pred CCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEe
Q psy8782 267 VAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAV 312 (482)
Q Consensus 267 ~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~va 312 (482)
...-..|+++| ++.+.++-...+.|+.++. .++......
T Consensus 168 ~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~------rsg~~v~tl 206 (493)
T PTZ00421 168 SDQITSLEWNL-DGSLLCTTSKDKKLNIIDP------RDGTIVSSV 206 (493)
T ss_pred CCceEEEEEEC-CCCEEEEecCCCEEEEEEC------CCCcEEEEE
No 170
>KOG0279|consensus
Probab=34.88 E-value=4.5e+02 Score=25.84 Aligned_cols=65 Identities=14% Similarity=0.111 Sum_probs=46.5
Q ss_pred ccEEEEcCCCCEEEEEC--CcEEEEcCC-CeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEe
Q psy8782 228 PVALATAPDGSLFVGDF--NLIRRIMTD-GTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVK 296 (482)
Q Consensus 228 P~giavd~~G~lyv~D~--~~I~~i~~~-G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~ 296 (482)
-.++++.+||+..++-. ..+|..|.. |+-+..+-.. -.--.++++++ +..-.|+-+....|..++
T Consensus 66 v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH---~~dVlsva~s~-dn~qivSGSrDkTiklwn 133 (315)
T KOG0279|consen 66 VSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGH---TKDVLSVAFST-DNRQIVSGSRDKTIKLWN 133 (315)
T ss_pred ecceEEccCCceEEeccccceEEEEEecCCcEEEEEEec---CCceEEEEecC-CCceeecCCCcceeeeee
Confidence 45788899999988887 677888854 4544444221 12346799998 888888888778888777
No 171
>KOG3567|consensus
Probab=34.44 E-value=53 Score=34.26 Aligned_cols=50 Identities=18% Similarity=0.220 Sum_probs=36.2
Q ss_pred cEEEEcCCCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEec
Q psy8782 246 LIRRIMTDGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKN 297 (482)
Q Consensus 246 ~I~~i~~~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~ 297 (482)
+|.+++++..-..- -.+..+|.-|.+|.+|. +|..|++|-..|.+.+++.
T Consensus 446 ~ilvi~~~n~~~l~-~~g~~~fylphgl~~dk-dgf~~~tdvash~v~k~k~ 495 (501)
T KOG3567|consen 446 TILVIDPNNAAVLQ-SSGKNLFYLPHGLSIDK-DGFYWVTDVASHQVFKLKP 495 (501)
T ss_pred eEEEEcCcchhhhh-hccCCceecCCcceecC-CCcEEeecccchhhhhccc
Confidence 45556554211111 23356788899999998 9999999999999999973
No 172
>KOG0278|consensus
Probab=32.72 E-value=4.7e+02 Score=25.39 Aligned_cols=95 Identities=11% Similarity=0.196 Sum_probs=60.6
Q ss_pred ccEEEEcCCCCEEEEEC-CcEEEEcCCCe-EEEEEeeccCCCCceee---EEEeCCCCeEEEEeCCCCEEEEEecCCccC
Q psy8782 228 PVALATAPDGSLFVGDF-NLIRRIMTDGT-VRTVVRLNVTRVAYRYH---IAYSPLDGTLYISDPESHQILRVKNAMDFS 302 (482)
Q Consensus 228 P~giavd~~G~lyv~D~-~~I~~i~~~G~-v~~~~g~~~~~~~~p~g---iavd~~~g~lyVaD~~n~~I~~~~~~~~~~ 302 (482)
+..+-+.++|.+...-. ..|..++++-- +.. ....|.- ..+.| +..+|||-.....++|++..
T Consensus 187 VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lK-------s~k~P~nV~SASL~P-~k~~fVaGged~~~~kfDy~---- 254 (334)
T KOG0278|consen 187 VTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLK-------SYKMPCNVESASLHP-KKEFFVAGGEDFKVYKFDYN---- 254 (334)
T ss_pred CcceeeccCCCEEEEecCceeEEecccccccee-------eccCccccccccccC-CCceEEecCcceEEEEEecc----
Confidence 56788999997665544 67777775531 111 1223433 35677 67999999999999999963
Q ss_pred CCCCc-EEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEECC
Q psy8782 303 APDYN-VEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADGT 357 (482)
Q Consensus 303 ~~~g~-~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~~ 357 (482)
+|+ +... . ...+.--+.+-+.|+|.+|-+-+.
T Consensus 255 --TgeEi~~~---------------n------kgh~gpVhcVrFSPdGE~yAsGSE 287 (334)
T KOG0278|consen 255 --TGEEIGSY---------------N------KGHFGPVHCVRFSPDGELYASGSE 287 (334)
T ss_pred --CCceeeec---------------c------cCCCCceEEEEECCCCceeeccCC
Confidence 332 1110 0 112333467889999999988773
No 173
>PF06079 Apyrase: Apyrase; InterPro: IPR009283 This family consists of several eukaryotic apyrase (or adenosine diphosphatase) proteins (3.6.1.5 from EC), and related nucleoside diphosphatases (3.6.1.6 from EC). The salivary apyrases of blood-feeding arthropods are nucleotide hydrolysing enzymes implicated in the inhibition of host platelet aggregation through the hydrolysis of extracellular adenosine diphosphate [].; GO: 0005509 calcium ion binding, 0016462 pyrophosphatase activity; PDB: 2H2N_A 1S18_A 2H2U_A 1S1D_B.
Probab=32.63 E-value=2.8e+02 Score=27.32 Aligned_cols=18 Identities=28% Similarity=0.528 Sum_probs=15.9
Q ss_pred CCeEEEEeCCCCEEEEEe
Q psy8782 279 DGTLYISDPESHQILRVK 296 (482)
Q Consensus 279 ~g~lyVaD~~n~~I~~~~ 296 (482)
+|.||-.|-..+-|+.+.
T Consensus 63 ngkLys~DDrTGiVyeI~ 80 (291)
T PF06079_consen 63 NGKLYSFDDRTGIVYEIK 80 (291)
T ss_dssp TTEEEEEETTT-EEEEEE
T ss_pred CCEEeeeeCCCceEEEEe
Confidence 799999999999999997
No 174
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=32.27 E-value=3.9e+02 Score=24.33 Aligned_cols=54 Identities=19% Similarity=0.068 Sum_probs=31.8
Q ss_pred ceEEEEcCCCcEE-EEeC---CcEEEEcCCCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEc
Q psy8782 122 PVALATAPDGSLF-VGDF---NLIRRIMTDGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKN 193 (482)
Q Consensus 122 P~glavd~~G~ly-vaD~---~~Irki~~~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d 193 (482)
...++..|+|+-+ |... ..|+.++.+++...-.+. ...+.+.++|+|..+.++.
T Consensus 62 I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~~------------------~~~n~i~wsP~G~~l~~~g 119 (194)
T PF08662_consen 62 IHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFGT------------------QPRNTISWSPDGRFLVLAG 119 (194)
T ss_pred eEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEeecC------------------CCceEEEECCCCCEEEEEE
Confidence 5778889988743 4432 577777776554433322 1134566777776666653
No 175
>KOG0275|consensus
Probab=32.09 E-value=5.3e+02 Score=25.83 Aligned_cols=110 Identities=13% Similarity=0.047 Sum_probs=53.9
Q ss_pred ceEEEecCCCeEEEEcCCCeEEEEcCCCc-ccc-CCCcCCCCCCCceeecCCccEEEEcCC--CCEEEEEC-CcEEEEcC
Q psy8782 178 SGILQKGDGSNIYLKNKPRIIKTTLGDGH-QRP-LDCKDCNGEAGPKQRLLAPVALATAPD--GSLFVGDF-NLIRRIMT 252 (482)
Q Consensus 178 ~gi~~~~~g~~lyi~d~~~~i~~~~g~G~-~~~-~~~~~~~g~~~~~~~l~~P~giavd~~--G~lyv~D~-~~I~~i~~ 252 (482)
+...+.++|..+.-+.+++.++++.+.-. ... +...+ .+. +. ..+..-|. ..+.|+.. +.|+.++.
T Consensus 352 n~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~-~d~-~v-------nsv~~~PKnpeh~iVCNrsntv~imn~ 422 (508)
T KOG0275|consen 352 NEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLG-TDY-PV-------NSVILLPKNPEHFIVCNRSNTVYIMNM 422 (508)
T ss_pred cceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCC-Ccc-cc-------eeEEEcCCCCceEEEEcCCCeEEEEec
Confidence 34455666766666677777777765322 210 00000 000 01 11222221 24455555 67777777
Q ss_pred CCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEec
Q psy8782 253 DGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKN 297 (482)
Q Consensus 253 ~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~ 297 (482)
.|++++.+..+...-..--..+++|.+..+|.. ......+.|..
T Consensus 423 qGQvVrsfsSGkREgGdFi~~~lSpkGewiYci-gED~vlYCF~~ 466 (508)
T KOG0275|consen 423 QGQVVRSFSSGKREGGDFINAILSPKGEWIYCI-GEDGVLYCFSV 466 (508)
T ss_pred cceEEeeeccCCccCCceEEEEecCCCcEEEEE-ccCcEEEEEEe
Confidence 777777665432111112235677844456654 34566777764
No 176
>KOG1539|consensus
Probab=32.00 E-value=5.2e+02 Score=29.32 Aligned_cols=156 Identities=18% Similarity=0.098 Sum_probs=78.7
Q ss_pred ccEEEEcCCCCEEEEEC--CcEEEEc-CCCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCC
Q psy8782 228 PVALATAPDGSLFVGDF--NLIRRIM-TDGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAP 304 (482)
Q Consensus 228 P~giavd~~G~lyv~D~--~~I~~i~-~~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~ 304 (482)
...+++++=||.-|.-+ +.|-+++ ..|.....+|...+.-..-.|+|+|. -+.+.|+-...+-+.-++.
T Consensus 451 ~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~-~n~~~vsa~~~Gilkfw~f------- 522 (910)
T KOG1539|consen 451 ATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDG-TNRLLVSAGADGILKFWDF------- 522 (910)
T ss_pred eEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecC-CCceEEEccCcceEEEEec-------
Confidence 44677777676554444 6777777 44554444443222223457999997 6777787766665555552
Q ss_pred CCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEE--EECCCEEEEcC-CCc-EEEEEcCCCCCCC
Q psy8782 305 DYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYF--ADGTNIRMVDR-DGI-VTTVIGNHMHKSH 380 (482)
Q Consensus 305 ~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyv--aD~~nIr~i~~-~G~-i~ti~G~~~~~~~ 380 (482)
.+.+ +.++-. .+. .+.+|.....-.++. +|-..|+++|. .-+ +..+.|.+.. -+
T Consensus 523 ~~k~--l~~~l~---------l~~----------~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nr-it 580 (910)
T KOG1539|consen 523 KKKV--LKKSLR---------LGS----------SITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNR-IT 580 (910)
T ss_pred CCcc--eeeeec---------cCC----------CcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccc-ee
Confidence 2211 111100 011 122333332222222 22233665553 222 2223333322 12
Q ss_pred CCcCCCCceEEeccc-cceeEEeecCcceEEecc
Q psy8782 381 WKPIPCEGTLNIEEV-SETMRDIRHTTGWACYGT 413 (482)
Q Consensus 381 ~~~~~~dg~l~v~~~-~~~~~~l~~p~giav~~~ 413 (482)
...+++||.-.+... ...|+..+.|++-.+|.-
T Consensus 581 d~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~ 614 (910)
T KOG1539|consen 581 DMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGL 614 (910)
T ss_pred eeEeCCCCcEEEEeecCCcEEEEeccCcceeeeE
Confidence 345678886555443 457887888988887743
No 177
>KOG0273|consensus
Probab=31.12 E-value=6.6e+02 Score=26.57 Aligned_cols=67 Identities=15% Similarity=0.172 Sum_probs=44.3
Q ss_pred CccEEEEcCCCCEEEEEC--CcEEEEcCCCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEec
Q psy8782 227 APVALATAPDGSLFVGDF--NLIRRIMTDGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKN 297 (482)
Q Consensus 227 ~P~giavd~~G~lyv~D~--~~I~~i~~~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~ 297 (482)
.-.+|+...+|++.++-. +.+|.++.+|.....++...+. -..|--.. .|+..++-.-.+++..++.
T Consensus 237 dVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgP---I~slKWnk-~G~yilS~~vD~ttilwd~ 305 (524)
T KOG0273|consen 237 DVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGP---IFSLKWNK-KGTYILSGGVDGTTILWDA 305 (524)
T ss_pred CcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCc---eEEEEEcC-CCCEEEeccCCccEEEEec
Confidence 346788888999998888 7889999999877666543221 12344444 5555555555566777764
No 178
>KOG0272|consensus
Probab=31.05 E-value=6.3e+02 Score=26.30 Aligned_cols=120 Identities=15% Similarity=0.142 Sum_probs=67.0
Q ss_pred eecCCccEEEEcCCCCEEEEEC--CcEEEEcCCCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCC--CEEEEEecC
Q psy8782 223 QRLLAPVALATAPDGSLFVGDF--NLIRRIMTDGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPES--HQILRVKNA 298 (482)
Q Consensus 223 ~~l~~P~giavd~~G~lyv~D~--~~I~~i~~~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n--~~I~~~~~~ 298 (482)
..+..-..++++|+|....+-. ..=|.+|..-+...+.. .+.-..-++|++.+ +|.|..+-... +||+-+.
T Consensus 259 gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~Q--EGHs~~v~~iaf~~-DGSL~~tGGlD~~~RvWDlR-- 333 (459)
T KOG0272|consen 259 GHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQ--EGHSKGVFSIAFQP-DGSLAATGGLDSLGRVWDLR-- 333 (459)
T ss_pred cchhhheeeeecCCCceeeecccccchhhcccccchhhHhh--cccccccceeEecC-CCceeeccCccchhheeecc--
Confidence 3445566789999997766665 33333332211111100 11122357899999 99998876543 4555443
Q ss_pred CccCCCCCc-EEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEECC-C-EEEEcCCC--cEEEEEc
Q psy8782 299 MDFSAPDYN-VEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADGT-N-IRMVDRDG--IVTTVIG 373 (482)
Q Consensus 299 ~~~~~~~g~-~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~~-n-Ir~i~~~G--~i~ti~G 373 (482)
+|. +.+++|. +..-.+|+++|+|....+-+. | +|+-|..+ .+.++.+
T Consensus 334 ------tgr~im~L~gH----------------------~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipA 385 (459)
T KOG0272|consen 334 ------TGRCIMFLAGH----------------------IKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPA 385 (459)
T ss_pred ------cCcEEEEeccc----------------------ccceeeEeECCCceEEeecCCCCcEEEeeecccccceeccc
Confidence 555 3344431 344578999999987776554 3 55444322 2556554
Q ss_pred CC
Q psy8782 374 NH 375 (482)
Q Consensus 374 ~~ 375 (482)
..
T Consensus 386 H~ 387 (459)
T KOG0272|consen 386 HS 387 (459)
T ss_pred cc
Confidence 43
No 179
>KOG2055|consensus
Probab=30.79 E-value=6.6e+02 Score=26.48 Aligned_cols=22 Identities=5% Similarity=-0.135 Sum_probs=14.5
Q ss_pred cccceeeeeeEEcC-CCcEEEEe
Q psy8782 437 NNSHFLDVHFSHQD-QDLFYFVK 458 (482)
Q Consensus 437 n~~~~~~~~i~~~~-~g~~yi~d 458 (482)
|..+-+...++|.+ .|.+-+..
T Consensus 479 n~~vg~vtc~aFSP~sG~lAvGN 501 (514)
T KOG2055|consen 479 NTKVGHVTCMAFSPNSGYLAVGN 501 (514)
T ss_pred CCcccceEEEEecCCCceEEeec
Confidence 55666677899998 55555543
No 180
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=30.62 E-value=5.9e+02 Score=25.84 Aligned_cols=63 Identities=24% Similarity=0.170 Sum_probs=35.7
Q ss_pred EEEcCCCC-EEEEEC----CcEEEEcCC-CeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeC--CCCEEEEEec
Q psy8782 231 LATAPDGS-LFVGDF----NLIRRIMTD-GTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDP--ESHQILRVKN 297 (482)
Q Consensus 231 iavd~~G~-lyv~D~----~~I~~i~~~-G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~--~n~~I~~~~~ 297 (482)
.++.|||. |+++.. ..|++++.. |+...+... . .....++++|++..|+++.. ++..|+.++.
T Consensus 195 p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~-~---~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~ 265 (417)
T TIGR02800 195 PAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASF-P---GMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDL 265 (417)
T ss_pred ccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecC-C---CCccceEECCCCCEEEEEECCCCCccEEEEEC
Confidence 45677774 444443 468888754 444443321 1 12345788984446777543 3457888884
No 181
>PLN00181 protein SPA1-RELATED; Provisional
Probab=30.20 E-value=8.5e+02 Score=27.58 Aligned_cols=66 Identities=9% Similarity=0.116 Sum_probs=43.0
Q ss_pred ccEEEEcC-CCCEEEEEC--CcEEEEcCC-CeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEec
Q psy8782 228 PVALATAP-DGSLFVGDF--NLIRRIMTD-GTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKN 297 (482)
Q Consensus 228 P~giavd~-~G~lyv~D~--~~I~~i~~~-G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~ 297 (482)
-..+++++ ++.++++-. +.|+.++.. +.....+.. ......+++.+.++.++++-...+.|+.++.
T Consensus 578 V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~----~~~v~~v~~~~~~g~~latgs~dg~I~iwD~ 647 (793)
T PLN00181 578 VWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT----KANICCVQFPSESGRSLAFGSADHKVYYYDL 647 (793)
T ss_pred EEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEec----CCCeEEEEEeCCCCCEEEEEeCCCeEEEEEC
Confidence 45788886 677776666 678888743 444333321 1234566665546777777778889998885
No 182
>KOG0283|consensus
Probab=29.31 E-value=8.5e+02 Score=27.30 Aligned_cols=157 Identities=17% Similarity=0.123 Sum_probs=77.1
Q ss_pred CceEEEEcC-CCcEEEEeC--CcEEEEcC-CCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCCC
Q psy8782 121 APVALATAP-DGSLFVGDF--NLIRRIMT-DGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKPR 196 (482)
Q Consensus 121 ~P~glavd~-~G~lyvaD~--~~Irki~~-~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~~ 196 (482)
+-++|++.| |.+.|++-. ++||..+- +-+|.--.... .--..+.|.++|+-..|-.-++
T Consensus 411 fVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-----------------~lITAvcy~PdGk~avIGt~~G 473 (712)
T KOG0283|consen 411 FVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-----------------DLITAVCYSPDGKGAVIGTFNG 473 (712)
T ss_pred eeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhh-----------------hhheeEEeccCCceEEEEEecc
Confidence 456788888 566777766 77777763 44443222110 0113344555554444433333
Q ss_pred eEEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcCC--CCEEEEEC-CcEEEEcC-CCeEEEEEeeccCCCCceee
Q psy8782 197 IIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPD--GSLFVGDF-NLIRRIMT-DGTVRTVVRLNVTRVAYRYH 272 (482)
Q Consensus 197 ~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~--G~lyv~D~-~~I~~i~~-~G~v~~~~g~~~~~~~~p~g 272 (482)
.+..+.-.+.....+.. -........+=..-.|+-+.|- ..|.|+.. .+||.++. +-.++..+. +......+.-
T Consensus 474 ~C~fY~t~~lk~~~~~~-I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfK-G~~n~~SQ~~ 551 (712)
T KOG0283|consen 474 YCRFYDTEGLKLVSDFH-IRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFK-GFRNTSSQIS 551 (712)
T ss_pred EEEEEEccCCeEEEeee-EeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhc-ccccCCccee
Confidence 33333222221100000 0000000111114556666542 25888888 89999985 222222221 1222334445
Q ss_pred EEEeCCCCeEEEEeCCCCEEEEEec
Q psy8782 273 IAYSPLDGTLYISDPESHQILRVKN 297 (482)
Q Consensus 273 iavd~~~g~lyVaD~~n~~I~~~~~ 297 (482)
-.++. +|.-.|+-...+.|+.++.
T Consensus 552 Asfs~-Dgk~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 552 ASFSS-DGKHIVSASEDSWVYIWKN 575 (712)
T ss_pred eeEcc-CCCEEEEeecCceEEEEeC
Confidence 56676 7877777778899888874
No 183
>KOG0284|consensus
Probab=28.07 E-value=4.7e+02 Score=27.07 Aligned_cols=108 Identities=7% Similarity=0.071 Sum_probs=67.6
Q ss_pred ceEEEecCCCeEEEEcCCCeEEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC--CcEEEEcCCCe
Q psy8782 178 SGILQKGDGSNIYLKNKPRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF--NLIRRIMTDGT 255 (482)
Q Consensus 178 ~gi~~~~~g~~lyi~d~~~~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~--~~I~~i~~~G~ 255 (482)
.-+.+.++|.+|.++...+..+...|+.-... ....+.=..-..|....+|.-.|+-. ..|..+.++-+
T Consensus 100 ~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFE---------tilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn 170 (464)
T KOG0284|consen 100 NVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFE---------TILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN 170 (464)
T ss_pred eeEEEcCCCceeEeecccccEEEecCceeeHH---------HHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh
Confidence 45566777878888777777777776432110 00111212235677777776555544 56777777655
Q ss_pred EEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEec
Q psy8782 256 VRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKN 297 (482)
Q Consensus 256 v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~ 297 (482)
.+..+.. ..-..-.++|++| ++.-|++-+..++|+.++.
T Consensus 171 nVk~~~a--hh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf 209 (464)
T KOG0284|consen 171 NVKIIQA--HHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDF 209 (464)
T ss_pred hhHHhhH--hhhhhhheeccCC-CCceeEEecCCCeEEEEec
Confidence 4433321 1123457899999 8899999998999988884
No 184
>PF15416 DUF4623: Domain of unknown function (DUF4623)
Probab=27.76 E-value=2.4e+02 Score=28.45 Aligned_cols=77 Identities=17% Similarity=0.325 Sum_probs=47.3
Q ss_pred ceeeEEEeCCCCeEEEEeCCCC-----EEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceE
Q psy8782 269 YRYHIAYSPLDGTLYISDPESH-----QILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGV 343 (482)
Q Consensus 269 ~p~giavd~~~g~lyVaD~~n~-----~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~gi 343 (482)
+|+-++--. +|++|++.-..+ +|+.+.. |+-..+++|-.-....||--...||. ..+
T Consensus 184 f~yNmgAl~-nGH~Y~asLSG~~~SPLKiY~w~t------Pts~PevIa~inV~~I~gAg~RhGDn-----------~S~ 245 (442)
T PF15416_consen 184 FSYNMGALV-NGHSYLASLSGGKASPLKIYYWET------PTSAPEVIADINVGDIPGAGNRHGDN-----------FSL 245 (442)
T ss_pred cccchhhhc-CCeEEEEeccCCCCCceEEEEecC------CCCCceEEEeeeeccCcccccccCcc-----------eeE
Confidence 455555444 899999875433 5777764 56667777765444444433344554 467
Q ss_pred EEeCCCc--EEEEECCC--EEEEc
Q psy8782 344 AVSADNI--LYFADGTN--IRMVD 363 (482)
Q Consensus 344 avd~~G~--lyvaD~~n--Ir~i~ 363 (482)
.+|.+|+ +||.|... |-+++
T Consensus 246 nlD~nGnGyiFFgdnaat~ilR~~ 269 (442)
T PF15416_consen 246 NLDENGNGYIFFGDNAATNILRFT 269 (442)
T ss_pred EeccCCceEEEecCCccceEEEEE
Confidence 7888765 77777643 55554
No 185
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=27.30 E-value=6.4e+02 Score=25.19 Aligned_cols=172 Identities=17% Similarity=0.213 Sum_probs=83.6
Q ss_pred CCcEEEEeC-CcEEEEcCCCeEEEEEeeCCCcccCCCccccccccccCCc-eEEE--ecCCCeEEEEcC-CCeEEEEcCC
Q psy8782 130 DGSLFVGDF-NLIRRIMTDGTVRTVVRLKNQKFEKFPKILTSCFLSLSPS-GILQ--KGDGSNIYLKNK-PRIIKTTLGD 204 (482)
Q Consensus 130 ~G~lyvaD~-~~Irki~~~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~-gi~~--~~~g~~lyi~d~-~~~i~~~~g~ 204 (482)
+.-+|++|. ..++.++-+- +..|..+.+-|. |.++ .-.|+-.|++|- ++.+..-..+
T Consensus 96 e~yvyvad~ssGL~IvDIS~------------------P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsd 157 (370)
T COG5276 96 EEYVYVADWSSGLRIVDIST------------------PDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSD 157 (370)
T ss_pred ccEEEEEcCCCceEEEeccC------------------CCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCC
Confidence 446899998 6777665221 111111112222 4443 345678899984 4443333322
Q ss_pred CccccCCCcCCCCCCCceeecCCc----cEEEEcCCCCEEEEEC-CcEEEEcCC-CeEEEEEeeccCCCCceeeEEEeCC
Q psy8782 205 GHQRPLDCKDCNGEAGPKQRLLAP----VALATAPDGSLFVGDF-NLIRRIMTD-GTVRTVVRLNVTRVAYRYHIAYSPL 278 (482)
Q Consensus 205 G~~~~~~~~~~~g~~~~~~~l~~P----~giavd~~G~lyv~D~-~~I~~i~~~-G~v~~~~g~~~~~~~~p~giavd~~ 278 (482)
.+.- ...+++..| +.+++.. ..-|++++ +-+..+|-. -.--++++.-... ...+++.++
T Consensus 158 pssP-----------~lagrya~~~~d~~~v~ISG-n~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g-~g~~sv~vs-- 222 (370)
T COG5276 158 PSSP-----------QLAGRYALPGGDTHDVAISG-NYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTG-PGTYSVSVS-- 222 (370)
T ss_pred CCCc-----------eeeeeeccCCCCceeEEEec-CeEEEEEeCCCeEEEEccCCCCCeEEEEEecC-CceEEEEec--
Confidence 2211 023333333 3466653 46889988 555555522 1111222221111 033555555
Q ss_pred CCeEEEEeCCCCEEEEEecCCccCCCCCc-EEEEecCCcccCCCCCCccCCCccccccccCCcce---EEEeCCCcEEEE
Q psy8782 279 DGTLYISDPESHQILRVKNAMDFSAPDYN-VEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKG---VAVSADNILYFA 354 (482)
Q Consensus 279 ~g~lyVaD~~n~~I~~~~~~~~~~~~~g~-~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~g---iavd~~G~lyva 354 (482)
++..|+++...+ +..++. ++. --++.|+-+. ..|.+ +.+ ++...||+
T Consensus 223 dnr~y~vvy~eg-vlivd~-------s~~ssp~~~gsyet--------------------~~p~~~s~v~V-s~~~~Yva 273 (370)
T COG5276 223 DNRAYLVVYDEG-VLIVDV-------SGPSSPTVFGSYET--------------------SNPVSISTVPV-SGEYAYVA 273 (370)
T ss_pred CCeeEEEEcccc-eEEEec-------CCCCCceEeecccc--------------------CCcccccceec-ccceeeee
Confidence 678888887554 334442 221 2244553221 22344 356 57789999
Q ss_pred ECCC-EEEEc
Q psy8782 355 DGTN-IRMVD 363 (482)
Q Consensus 355 D~~n-Ir~i~ 363 (482)
|... ...++
T Consensus 274 dga~gl~~id 283 (370)
T COG5276 274 DGAKGLPIID 283 (370)
T ss_pred ccccCceeEe
Confidence 9976 44443
No 186
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=27.14 E-value=6.4e+02 Score=25.15 Aligned_cols=62 Identities=18% Similarity=0.220 Sum_probs=43.2
Q ss_pred CccEEEEcCCCCEEEEEC---CcEEEEc-CCCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEe
Q psy8782 227 APVALATAPDGSLFVGDF---NLIRRIM-TDGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVK 296 (482)
Q Consensus 227 ~P~giavd~~G~lyv~D~---~~I~~i~-~~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~ 296 (482)
+--.||++++|.++.+.+ +++..++ .+|.+.... .+.--.|++..+ ++ |+.-++.+.+.++.
T Consensus 218 Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~-----~l~D~cGva~~~-~~--f~~ssG~G~~~~~~ 283 (305)
T PF07433_consen 218 YIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSV-----PLPDACGVAPTD-DG--FLVSSGQGQLIRLS 283 (305)
T ss_pred ceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecc-----ccCceeeeeecC-Cc--eEEeCCCccEEEcc
Confidence 345799999997665555 8999995 678776543 334456788876 55 66666777777776
No 187
>TIGR03803 Gloeo_Verruco Gloeo_Verruco repeat. This model describes a rare protein repeat, found so far in two species of Verrucomicrobia (Chthoniobacter flavus and Verrucomicrobium spinosum) and in four different proteins of Gloeobacter violaceus PCC7421. In the Verrucomicrobial species, the repeat region is followed by a PEP-CTERM protein-sorting signal, suggesting an extracellular location.
Probab=27.05 E-value=1.3e+02 Score=19.47 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=17.4
Q ss_pred CCCEEEEEC-------CcEEEEcCCCeEEEE
Q psy8782 236 DGSLFVGDF-------NLIRRIMTDGTVRTV 259 (482)
Q Consensus 236 ~G~lyv~D~-------~~I~~i~~~G~v~~~ 259 (482)
+|+||.+-. ..|+|++++|..+++
T Consensus 1 dg~lYGTT~~GG~~~~GTvf~~~~~g~~t~L 31 (34)
T TIGR03803 1 GGTLYGTTSGGGASGFGTLYRLSTAGGTTVL 31 (34)
T ss_pred CCcEEEEcccCCCCCceeEEEEcCCCCeEEE
Confidence 466777665 479999999987443
No 188
>PRK02889 tolB translocation protein TolB; Provisional
Probab=26.93 E-value=7.2e+02 Score=25.70 Aligned_cols=49 Identities=12% Similarity=-0.031 Sum_probs=25.6
Q ss_pred cEEEEcCCCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeC--CCCEEEEEec
Q psy8782 246 LIRRIMTDGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDP--ESHQILRVKN 297 (482)
Q Consensus 246 ~I~~i~~~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~--~n~~I~~~~~ 297 (482)
+|+..+.+|.....+...... -...+++|++..|+++.. .+..|+.++.
T Consensus 177 ~L~~~D~dG~~~~~l~~~~~~---v~~p~wSPDG~~la~~s~~~~~~~I~~~dl 227 (427)
T PRK02889 177 QLQISDADGQNAQSALSSPEP---IISPAWSPDGTKLAYVSFESKKPVVYVHDL 227 (427)
T ss_pred EEEEECCCCCCceEeccCCCC---cccceEcCCCCEEEEEEccCCCcEEEEEEC
Confidence 566666666432222111111 134578884446655443 3457888885
No 189
>PRK04043 tolB translocation protein TolB; Provisional
Probab=26.00 E-value=7.6e+02 Score=25.65 Aligned_cols=64 Identities=8% Similarity=0.007 Sum_probs=34.6
Q ss_pred EEEEcCCCC--EEEEEC----CcEEEEcCC-CeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeC--CCCEEEEEec
Q psy8782 230 ALATAPDGS--LFVGDF----NLIRRIMTD-GTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDP--ESHQILRVKN 297 (482)
Q Consensus 230 giavd~~G~--lyv~D~----~~I~~i~~~-G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~--~n~~I~~~~~ 297 (482)
.....|||. +|++.. ..|++++.. |+...+.. .. . ......++|++..|.++.. ++..|+.++.
T Consensus 192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~-g--~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl 264 (419)
T PRK04043 192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQ-G--MLVVSDVSKDGSKLLLTMAPKGQPDIYLYDT 264 (419)
T ss_pred eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CC-C--cEEeeEECCCCCEEEEEEccCCCcEEEEEEC
Confidence 345667774 666544 357777754 44444431 11 1 1122457884446665543 4567888884
No 190
>PRK12813 flgD flagellar basal body rod modification protein; Reviewed
Probab=25.66 E-value=64 Score=30.58 Aligned_cols=24 Identities=13% Similarity=0.137 Sum_probs=18.6
Q ss_pred eEEEEEcCcccCCceEe-eeEEEEE
Q psy8782 3 KFTYAWNRLNVYRQRVY-GVTTALV 26 (482)
Q Consensus 3 ~~~f~w~~~d~y~~~v~-g~~~a~v 26 (482)
.+.|.||++|.-|..+. |.....|
T Consensus 147 ~~~f~WDG~d~~G~~l~~G~Yt~~V 171 (223)
T PRK12813 147 AGPVEWAGEDADGNPLPNGAYSFVV 171 (223)
T ss_pred ceeEEeCCcCCCCCcCCCccEEEEE
Confidence 47899999999999884 6555544
No 191
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=25.55 E-value=1.2e+02 Score=18.28 Aligned_cols=23 Identities=17% Similarity=0.400 Sum_probs=14.8
Q ss_pred CCCcEEEEECCC-EEEEcC-CCcEE
Q psy8782 347 ADNILYFADGTN-IRMVDR-DGIVT 369 (482)
Q Consensus 347 ~~G~lyvaD~~n-Ir~i~~-~G~i~ 369 (482)
.+|.+|+++... +..+|. +|++.
T Consensus 5 ~~~~v~~~~~~g~l~a~d~~~G~~~ 29 (33)
T smart00564 5 SDGTVYVGSTDGTLYALDAKTGEIL 29 (33)
T ss_pred ECCEEEEEcCCCEEEEEEcccCcEE
Confidence 456778777655 777765 56543
No 192
>KOG0268|consensus
Probab=25.28 E-value=7.5e+02 Score=25.32 Aligned_cols=70 Identities=16% Similarity=0.297 Sum_probs=46.6
Q ss_pred ceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCC
Q psy8782 269 YRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSAD 348 (482)
Q Consensus 269 ~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~ 348 (482)
.++.|+.+| +...|++-...+.++.+|.- .+..-.+ .+ .|- .+.-..+.+.|.
T Consensus 231 RTN~IswnP-eafnF~~a~ED~nlY~~DmR--------~l~~p~~----------v~-~dh-------vsAV~dVdfspt 283 (433)
T KOG0268|consen 231 RTNTICWNP-EAFNFVAANEDHNLYTYDMR--------NLSRPLN----------VH-KDH-------VSAVMDVDFSPT 283 (433)
T ss_pred cccceecCc-cccceeeccccccceehhhh--------hhcccch----------hh-ccc-------ceeEEEeccCCC
Confidence 478899999 99999998888999988831 1111111 01 111 223456788899
Q ss_pred CcEEEEECCC--EEEEcCC
Q psy8782 349 NILYFADGTN--IRMVDRD 365 (482)
Q Consensus 349 G~lyvaD~~n--Ir~i~~~ 365 (482)
|.=||+-+.. ||.+..+
T Consensus 284 G~EfvsgsyDksIRIf~~~ 302 (433)
T KOG0268|consen 284 GQEFVSGSYDKSIRIFPVN 302 (433)
T ss_pred cchhccccccceEEEeecC
Confidence 9988888765 8888653
No 193
>KOG1407|consensus
Probab=24.91 E-value=6.6e+02 Score=24.57 Aligned_cols=28 Identities=7% Similarity=0.040 Sum_probs=22.7
Q ss_pred ceeeEEEeCCCCeEEEEeCCCCEEEEEec
Q psy8782 269 YRYHIAYSPLDGTLYISDPESHQILRVKN 297 (482)
Q Consensus 269 ~p~giavd~~~g~lyVaD~~n~~I~~~~~ 297 (482)
.-+-++..- ++++|+...++++|..+..
T Consensus 149 e~ne~~w~~-~nd~Fflt~GlG~v~ILsy 176 (313)
T KOG1407|consen 149 EVNEISWNN-SNDLFFLTNGLGCVEILSY 176 (313)
T ss_pred eeeeeeecC-CCCEEEEecCCceEEEEec
Confidence 345677774 8899999999999998875
No 194
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=24.59 E-value=1.8e+02 Score=18.02 Aligned_cols=28 Identities=29% Similarity=0.337 Sum_probs=20.6
Q ss_pred CceeeEEEeCCCCeEEEEeCCCCEEEEEe
Q psy8782 268 AYRYHIAYSPLDGTLYISDPESHQILRVK 296 (482)
Q Consensus 268 ~~p~giavd~~~g~lyVaD~~n~~I~~~~ 296 (482)
...+.|+++| ++.++++-...+.|+.++
T Consensus 12 ~~i~~i~~~~-~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 12 SSINSIAWSP-DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp SSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred CcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence 4567899999 677777766777777653
No 195
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=24.28 E-value=9.9e+02 Score=27.19 Aligned_cols=35 Identities=17% Similarity=0.363 Sum_probs=20.4
Q ss_pred CCCceEEeccccceeEEeecCcceEEecccCCCce
Q psy8782 385 PCEGTLNIEEVSETMRDIRHTTGWACYGTGDNDHM 419 (482)
Q Consensus 385 ~~dg~l~v~~~~~~~~~l~~p~giav~~~g~n~~~ 419 (482)
.|++.+|+.....++..|+.-+|-.+-..+.++++
T Consensus 258 ~~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~v 292 (764)
T TIGR03074 258 DCARRIILPTSDARLIALDADTGKLCEDFGNNGTV 292 (764)
T ss_pred ccCCEEEEecCCCeEEEEECCCCCEEEEecCCCce
Confidence 46666776665566666776666655443444444
No 196
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=24.23 E-value=6.8e+02 Score=24.44 Aligned_cols=43 Identities=21% Similarity=0.194 Sum_probs=25.3
Q ss_pred CCCCcCcccCCCceEEEEcCC---CcEEE--EeC-CcEEEEc----CCCeEEE
Q psy8782 110 NGEAGPKQRLLAPVALATAPD---GSLFV--GDF-NLIRRIM----TDGTVRT 152 (482)
Q Consensus 110 ~G~~~~~~~l~~P~glavd~~---G~lyv--aD~-~~Irki~----~~G~v~t 152 (482)
++.+...+.++.|+|++.-.+ |..|+ .+. .-|+.+. .+|+|.+
T Consensus 143 D~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~~qG~~~Qy~l~d~gnGkv~~ 195 (364)
T COG4247 143 DSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNRRQGDIAQYKLIDQGNGKVGT 195 (364)
T ss_pred CCCCccccCcccceeeEEEecCCcCcEEEEEecCCCceeEEEEEecCCceEcc
Confidence 444444678899999998642 66554 444 4444432 2455554
No 197
>KOG3881|consensus
Probab=23.99 E-value=8.1e+02 Score=25.25 Aligned_cols=110 Identities=13% Similarity=0.105 Sum_probs=61.8
Q ss_pred CccEEEEcCC--CCEEEEEC--CcEEEEcCCCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccC
Q psy8782 227 APVALATAPD--GSLFVGDF--NLIRRIMTDGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFS 302 (482)
Q Consensus 227 ~P~giavd~~--G~lyv~D~--~~I~~i~~~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~ 302 (482)
.+.++.+-+. -.-|++-+ +.+|.+|+.-+-..++... -.-+.-+.++..|....||++++ ...+-.||.
T Consensus 204 W~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd-~~E~~is~~~l~p~gn~Iy~gn~-~g~l~~FD~----- 276 (412)
T KOG3881|consen 204 WITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFD-FLENPISSTGLTPSGNFIYTGNT-KGQLAKFDL----- 276 (412)
T ss_pred eeccceecCCCCCceEEEEecceeEEEecCcccCcceeEec-cccCcceeeeecCCCcEEEEecc-cchhheecc-----
Confidence 3556666553 56666666 8999999765433332210 00112356788885567888886 567888874
Q ss_pred CCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEECC--C-EEEEcCC
Q psy8782 303 APDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADGT--N-IRMVDRD 365 (482)
Q Consensus 303 ~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~~--n-Ir~i~~~ 365 (482)
.+.. +.|.+- +| .-..+++|..++.+.+ +|-.+ . +|+.|..
T Consensus 277 --r~~k--l~g~~~-----------kg------~tGsirsih~hp~~~~-las~GLDRyvRIhD~k 320 (412)
T KOG3881|consen 277 --RGGK--LLGCGL-----------KG------ITGSIRSIHCHPTHPV-LASCGLDRYVRIHDIK 320 (412)
T ss_pred --cCce--eecccc-----------CC------ccCCcceEEEcCCCce-EEeeccceeEEEeecc
Confidence 2222 222111 11 1235788999877553 44443 2 8888754
No 198
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=22.96 E-value=6.8e+02 Score=24.04 Aligned_cols=58 Identities=14% Similarity=0.108 Sum_probs=34.6
Q ss_pred CCCEEEEEC---CcEEEEcCCCeE------EEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEec
Q psy8782 236 DGSLFVGDF---NLIRRIMTDGTV------RTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKN 297 (482)
Q Consensus 236 ~G~lyv~D~---~~I~~i~~~G~v------~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~ 297 (482)
+..+|+.+. +.|+.+..-..+ .+.... .-.... .|-+|- +|.||.--.....|.|+++
T Consensus 30 ~~~iy~~~~~~~~~v~ey~~~~~f~~~~~~~~~~~L-p~~~~G-tG~vVY--ngslYY~~~~s~~IvkydL 96 (250)
T PF02191_consen 30 SEKIYVTSGFSGNTVYEYRNYEDFLRNGRSSRTYKL-PYPWQG-TGHVVY--NGSLYYNKYNSRNIVKYDL 96 (250)
T ss_pred CCCEEEECccCCCEEEEEcCHhHHhhcCCCceEEEE-eceecc-CCeEEE--CCcEEEEecCCceEEEEEC
Confidence 467888887 456666422211 111111 111122 344453 7999999999999999997
No 199
>KOG2111|consensus
Probab=22.07 E-value=7.6e+02 Score=24.76 Aligned_cols=74 Identities=22% Similarity=0.224 Sum_probs=49.8
Q ss_pred eeecCCccEEEEcCCCCEEEEEC---CcEEEEc-CCCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEec
Q psy8782 222 KQRLLAPVALATAPDGSLFVGDF---NLIRRIM-TDGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKN 297 (482)
Q Consensus 222 ~~~l~~P~giavd~~G~lyv~D~---~~I~~i~-~~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~ 297 (482)
.+....-.-|+...+|.+.-+-+ ..||.|+ .+|+...-+..+ .+-..-+.|+++| +..+..+-+..+.+..|.+
T Consensus 178 ~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG-~d~A~iy~iaFSp-~~s~LavsSdKgTlHiF~l 255 (346)
T KOG2111|consen 178 NAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRG-VDRADIYCIAFSP-NSSWLAVSSDKGTLHIFSL 255 (346)
T ss_pred EcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecC-CchheEEEEEeCC-CccEEEEEcCCCeEEEEEe
Confidence 34445556678888998887777 4688887 567665544433 3345678899999 6666666666777777764
No 200
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=21.32 E-value=6e+02 Score=25.48 Aligned_cols=59 Identities=10% Similarity=0.135 Sum_probs=37.8
Q ss_pred CCEEEEEC---CcEEEEcCCCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCC----CCEEEEEec
Q psy8782 237 GSLFVGDF---NLIRRIMTDGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPE----SHQILRVKN 297 (482)
Q Consensus 237 G~lyv~D~---~~I~~i~~~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~----n~~I~~~~~ 297 (482)
+.|++++. .+|..++.+|...+.+..+ .+.--.-+.+|+..+.||+.-.. ...+++++.
T Consensus 249 ~~l~~s~~~G~~hly~~~~~~~~~~~lT~G--~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~ 314 (353)
T PF00930_consen 249 EFLWISERDGYRHLYLYDLDGGKPRQLTSG--DWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSL 314 (353)
T ss_dssp EEEEEEETTSSEEEEEEETTSSEEEESS-S--SS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEET
T ss_pred EEEEEEEcCCCcEEEEEcccccceeccccC--ceeecccceEcCCCCEEEEEecCCCCCceEEEEEEe
Confidence 35666666 4788998888765544322 22222346788867888887654 568889984
No 201
>KOG0772|consensus
Probab=21.26 E-value=1e+03 Score=25.54 Aligned_cols=27 Identities=4% Similarity=-0.054 Sum_probs=16.6
Q ss_pred eeEEEeCCCCeEEEEeCCCCEEEEEec
Q psy8782 271 YHIAYSPLDGTLYISDPESHQILRVKN 297 (482)
Q Consensus 271 ~giavd~~~g~lyVaD~~n~~I~~~~~ 297 (482)
+.-+.+|.....|++-...+.++.++.
T Consensus 272 t~g~whP~~k~~FlT~s~DgtlRiWdv 298 (641)
T KOG0772|consen 272 TCGCWHPDNKEEFLTCSYDGTLRIWDV 298 (641)
T ss_pred eccccccCcccceEEecCCCcEEEEec
Confidence 344567766677777666665555553
No 202
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=20.73 E-value=7.5e+02 Score=23.66 Aligned_cols=68 Identities=19% Similarity=0.253 Sum_probs=43.7
Q ss_pred cEEEEcC-CCCEEEEEC-CcEEEEcCCCeEEEEEeec---cCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEec
Q psy8782 229 VALATAP-DGSLFVGDF-NLIRRIMTDGTVRTVVRLN---VTRVAYRYHIAYSPLDGTLYISDPESHQILRVKN 297 (482)
Q Consensus 229 ~giavd~-~G~lyv~D~-~~I~~i~~~G~v~~~~g~~---~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~ 297 (482)
.||.+-| +|.||-... ++|+.+++.--..+.+|.. ..-...+.++.+.|.-++|.|.-. +++=+|++.
T Consensus 30 ~GID~Rpa~G~LYgl~~~g~lYtIn~~tG~aT~vg~s~~~~al~g~~~gvDFNP~aDRlRvvs~-~GqNlR~np 102 (236)
T PF14339_consen 30 VGIDFRPANGQLYGLGSTGRLYTINPATGAATPVGASPLTVALSGTAFGVDFNPAADRLRVVSN-TGQNLRLNP 102 (236)
T ss_pred EEEEeecCCCCEEEEeCCCcEEEEECCCCeEEEeecccccccccCceEEEecCcccCcEEEEcc-CCcEEEECC
Confidence 4677766 789997644 9999999754444444421 111123778888887788877643 445556664
No 203
>PRK12690 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=20.23 E-value=2.4e+02 Score=26.92 Aligned_cols=34 Identities=12% Similarity=0.002 Sum_probs=20.3
Q ss_pred CCccEEEEcCCCCEEEEEC-------CcEEEEcCCCeEEEE
Q psy8782 226 LAPVALATAPDGSLFVGDF-------NLIRRIMTDGTVRTV 259 (482)
Q Consensus 226 ~~P~giavd~~G~lyv~D~-------~~I~~i~~~G~v~~~ 259 (482)
..|.++|+..+|.+-|.+. +--++++++|.+++.
T Consensus 76 g~~lDlAI~G~GFF~V~~~~G~~yTR~G~F~~d~~G~Lvt~ 116 (238)
T PRK12690 76 GGQFDFAIEGEGFFMVETPQGERLTRAGSFTPNAEGELVDP 116 (238)
T ss_pred CCceeEEECCCcEEEEEcCCCCEEeeCCCeEECCCCCEEcC
Confidence 4678888877776555543 223445666665543
No 204
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=20.20 E-value=4.3e+02 Score=28.53 Aligned_cols=66 Identities=14% Similarity=0.171 Sum_probs=41.1
Q ss_pred CCCEEEEEC-CcEEEEc-CCCeEEEEEeeccC-CC-------CceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCC
Q psy8782 236 DGSLFVGDF-NLIRRIM-TDGTVRTVVRLNVT-RV-------AYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPD 305 (482)
Q Consensus 236 ~G~lyv~D~-~~I~~i~-~~G~v~~~~g~~~~-~~-------~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~ 305 (482)
+|.||+++. +.|+.+| .+|++.=....... .. ....++++. ++.||++.. .++++.++. .+
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~~v~v~t~-dg~l~ALDa------~T 139 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DGKVFFGTL-DARLVALDA------KT 139 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--CCEEEEEcC-CCEEEEEEC------CC
Confidence 588999888 7889998 46765433322110 00 012456775 678998765 568888986 46
Q ss_pred CcEEE
Q psy8782 306 YNVEP 310 (482)
Q Consensus 306 g~~~~ 310 (482)
|++.-
T Consensus 140 Gk~~W 144 (527)
T TIGR03075 140 GKVVW 144 (527)
T ss_pred CCEEe
Confidence 66543
No 205
>KOG0289|consensus
Probab=20.17 E-value=1e+03 Score=24.99 Aligned_cols=67 Identities=18% Similarity=0.220 Sum_probs=44.4
Q ss_pred cEEEEcCCCCEEEEEC-CcEEEEc--CCCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEec
Q psy8782 229 VALATAPDGSLFVGDF-NLIRRIM--TDGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKN 297 (482)
Q Consensus 229 ~giavd~~G~lyv~D~-~~I~~i~--~~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~ 297 (482)
.++...|.|..+++-. ..-+.|. .+|...++..-...+. .-..++++| +|.|+.+-+.++.|..++.
T Consensus 307 ~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v-~~ts~~fHp-DgLifgtgt~d~~vkiwdl 376 (506)
T KOG0289|consen 307 TGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDV-EYTSAAFHP-DGLIFGTGTPDGVVKIWDL 376 (506)
T ss_pred eeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccc-eeEEeeEcC-CceEEeccCCCceEEEEEc
Confidence 4677778787666665 2333332 5676666553321112 235678999 9999999999999999985
Done!