Query psy8782
Match_columns 482
No_of_seqs 442 out of 2442
Neff 8.3
Searched_HMMs 29240
Date Fri Aug 16 19:10:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8782.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8782hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hw6_A Hypothetical protein, I 100.0 1.6E-32 5.5E-37 285.3 30.9 296 81-469 100-431 (433)
2 3kya_A Putative phosphatase; s 100.0 3.9E-31 1.3E-35 276.0 30.3 313 82-474 97-478 (496)
3 3hrp_A Uncharacterized protein 100.0 1.2E-30 4E-35 269.4 33.4 296 81-468 97-407 (409)
4 3tc9_A Hypothetical hydrolase; 100.0 9.6E-31 3.3E-35 271.7 28.7 295 82-469 99-428 (430)
5 3fvz_A Peptidyl-glycine alpha- 99.9 9.4E-25 3.2E-29 217.9 31.7 276 115-470 19-321 (329)
6 3kya_A Putative phosphatase; s 99.9 8.6E-25 3E-29 228.1 23.4 264 72-377 151-485 (496)
7 4hw6_A Hypothetical protein, I 99.9 1.7E-23 5.8E-28 217.3 27.5 276 42-365 109-432 (433)
8 3s94_A LRP-6, low-density lipo 99.9 2.2E-22 7.4E-27 217.8 34.2 334 69-468 84-548 (619)
9 3tc9_A Hypothetical hydrolase; 99.9 4.3E-23 1.5E-27 214.1 25.2 275 43-365 108-429 (430)
10 3s94_A LRP-6, low-density lipo 99.9 1.6E-21 5.3E-26 211.1 35.7 320 117-468 81-507 (619)
11 4a0p_A LRP6, LRP-6, low-densit 99.9 5.4E-21 1.9E-25 207.1 37.5 337 69-468 80-546 (628)
12 1q7f_A NHL, brain tumor CG1071 99.9 3.6E-21 1.2E-25 186.8 29.2 241 116-403 26-277 (286)
13 3hrp_A Uncharacterized protein 99.9 2.5E-20 8.7E-25 192.0 32.5 300 20-364 81-408 (409)
14 2qc5_A Streptogramin B lactona 99.9 2E-19 7E-24 174.2 35.8 271 118-468 18-297 (300)
15 3fvz_A Peptidyl-glycine alpha- 99.9 1.8E-20 6.1E-25 186.8 24.2 217 117-367 88-323 (329)
16 4a0p_A LRP6, LRP-6, low-densit 99.9 3.7E-19 1.3E-23 192.7 35.2 317 118-468 78-505 (628)
17 2z2n_A Virginiamycin B lyase; 99.9 1.9E-18 6.4E-23 167.3 34.9 272 117-468 12-292 (299)
18 2qc5_A Streptogramin B lactona 99.9 1.1E-18 3.8E-23 169.0 32.8 230 118-403 60-297 (300)
19 1ijq_A LDL receptor, low-densi 99.9 4E-19 1.4E-23 176.6 29.2 201 118-372 28-245 (316)
20 3v65_B Low-density lipoprotein 99.8 1.8E-19 6.3E-24 184.1 25.7 200 117-372 113-325 (386)
21 3v64_C Agrin; beta propeller, 99.8 2.1E-19 7.1E-24 181.3 25.7 200 117-372 70-282 (349)
22 1rwi_B Serine/threonine-protei 99.8 3.3E-19 1.1E-23 170.9 24.0 233 118-405 21-263 (270)
23 3p5b_L Low density lipoprotein 99.8 5E-19 1.7E-23 181.8 26.8 202 117-372 109-327 (400)
24 1npe_A Nidogen, entactin; glyc 99.8 1E-18 3.5E-23 168.6 26.9 199 119-374 35-247 (267)
25 3v64_C Agrin; beta propeller, 99.8 9.3E-19 3.2E-23 176.5 24.5 227 123-405 37-274 (349)
26 2z2n_A Virginiamycin B lyase; 99.8 1.5E-17 5E-22 161.0 31.3 229 119-403 56-292 (299)
27 3sov_A LRP-6, low-density lipo 99.8 6.5E-19 2.2E-23 175.4 21.6 200 117-372 32-245 (318)
28 1q7f_A NHL, brain tumor CG1071 99.8 6.1E-18 2.1E-22 163.9 27.6 197 116-364 73-278 (286)
29 3v65_B Low-density lipoprotein 99.8 1.4E-18 4.9E-23 177.5 23.2 228 123-406 80-318 (386)
30 3m0c_C LDL receptor, low-densi 99.8 1.9E-18 6.6E-23 191.0 25.3 202 117-372 421-640 (791)
31 1ijq_A LDL receptor, low-densi 99.8 6E-18 2.1E-22 168.1 25.2 180 133-367 4-196 (316)
32 2fp8_A Strictosidine synthase; 99.8 8.9E-18 3E-22 166.6 24.6 252 116-403 15-310 (322)
33 3p5b_L Low density lipoprotein 99.8 8.8E-18 3E-22 172.5 24.9 192 224-468 110-317 (400)
34 2p4o_A Hypothetical protein; p 99.8 6.5E-18 2.2E-22 166.7 22.9 200 120-373 32-249 (306)
35 1rwi_B Serine/threonine-protei 99.8 9.9E-18 3.4E-22 160.5 23.3 192 118-365 65-263 (270)
36 3m0c_C LDL receptor, low-densi 99.8 1.2E-17 4.2E-22 184.6 25.5 193 125-368 390-591 (791)
37 1npe_A Nidogen, entactin; glyc 99.8 4.4E-17 1.5E-21 157.0 22.0 216 132-403 3-235 (267)
38 3sov_A LRP-6, low-density lipo 99.8 4.2E-17 1.4E-21 162.3 21.3 220 130-404 4-236 (318)
39 1n7d_A LDL receptor, low-densi 99.7 6.8E-18 2.3E-22 185.2 13.4 212 117-377 403-626 (699)
40 3e5z_A Putative gluconolactona 99.7 1.7E-15 5.8E-20 147.6 28.2 230 117-403 25-283 (296)
41 2fp8_A Strictosidine synthase; 99.7 1.2E-15 4.2E-20 151.1 24.1 195 117-366 77-313 (322)
42 3a9g_A Putative uncharacterize 99.7 3.7E-15 1.3E-19 150.4 27.0 157 118-358 27-218 (354)
43 3dr2_A Exported gluconolactona 99.7 2.2E-15 7.5E-20 148.1 24.7 222 117-394 42-295 (305)
44 3g4e_A Regucalcin; six bladed 99.7 2E-15 6.8E-20 147.9 23.8 228 117-395 10-261 (297)
45 1pjx_A Dfpase, DIISOPROPYLFLUO 99.7 4.7E-15 1.6E-19 144.8 26.3 234 116-395 14-287 (314)
46 1n7d_A LDL receptor, low-densi 99.7 1.1E-16 3.9E-21 175.4 14.8 191 127-368 374-573 (699)
47 2ism_A Putative oxidoreductase 99.7 7.7E-15 2.6E-19 147.9 25.9 257 117-461 28-335 (352)
48 2qe8_A Uncharacterized protein 99.7 1.3E-14 4.3E-19 145.3 27.0 217 223-469 64-319 (343)
49 2qe8_A Uncharacterized protein 99.6 1.9E-13 6.4E-18 136.8 27.7 242 70-358 18-311 (343)
50 2p4o_A Hypothetical protein; p 99.6 4.7E-13 1.6E-17 131.7 23.5 191 226-470 32-241 (306)
51 3e5z_A Putative gluconolactona 99.5 2.9E-12 9.9E-17 124.6 27.7 227 68-364 27-284 (296)
52 2g8s_A Glucose/sorbosone dehyd 99.5 2.9E-13 1E-17 136.4 20.9 262 118-469 16-352 (353)
53 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 1.3E-12 4.5E-17 127.3 24.8 194 120-365 71-298 (314)
54 2dg1_A DRP35, lactonase; beta 99.5 1.4E-12 4.7E-17 128.7 24.8 208 118-375 43-272 (333)
55 3dsm_A Uncharacterized protein 99.5 2.1E-12 7.3E-17 128.3 24.4 201 119-373 83-309 (328)
56 3g4e_A Regucalcin; six bladed 99.5 1.1E-11 3.8E-16 121.0 26.5 186 120-357 54-262 (297)
57 3dsm_A Uncharacterized protein 99.5 1.8E-11 6.2E-16 121.5 27.0 192 226-470 84-301 (328)
58 3dr2_A Exported gluconolactona 99.5 2E-11 6.8E-16 119.7 26.6 227 69-363 45-303 (305)
59 2ism_A Putative oxidoreductase 99.5 2.6E-12 9E-17 129.3 19.5 122 223-367 28-179 (352)
60 3das_A Putative oxidoreductase 99.4 5.2E-11 1.8E-15 119.0 28.4 160 117-358 29-222 (347)
61 2ghs_A AGR_C_1268P; regucalcin 99.4 1.6E-11 5.4E-16 121.8 23.5 204 118-374 47-268 (326)
62 3a9g_A Putative uncharacterize 99.4 4.8E-12 1.6E-16 127.5 18.7 150 223-395 26-216 (354)
63 3hfq_A Uncharacterized protein 99.4 9.3E-11 3.2E-15 116.2 26.2 245 119-395 39-305 (347)
64 3sre_A PON1, serum paraoxonase 99.4 1.2E-11 4E-16 124.2 19.4 199 120-365 50-297 (355)
65 3no2_A Uncharacterized protein 99.4 2.1E-10 7.2E-15 111.3 27.2 209 121-375 38-262 (276)
66 3vgz_A Uncharacterized protein 99.4 2.1E-09 7.3E-14 105.8 33.8 269 120-460 41-334 (353)
67 3no2_A Uncharacterized protein 99.3 8.9E-10 3E-14 106.8 28.2 192 227-461 38-233 (276)
68 1cru_A Protein (soluble quinop 99.3 6E-10 2.1E-14 115.9 27.7 164 117-358 24-248 (454)
69 3vgz_A Uncharacterized protein 99.3 7.8E-10 2.7E-14 108.9 26.8 226 121-393 90-331 (353)
70 2dg1_A DRP35, lactonase; beta 99.3 5.1E-10 1.7E-14 110.2 25.4 189 120-357 87-300 (333)
71 3qqz_A Putative uncharacterize 99.3 9.9E-10 3.4E-14 105.1 24.4 209 120-365 27-252 (255)
72 3hfq_A Uncharacterized protein 99.3 3.1E-09 1.1E-13 105.1 28.8 226 224-467 38-313 (347)
73 2p9w_A MAL S 1 allergenic prot 99.3 5.3E-10 1.8E-14 110.1 21.4 211 117-366 10-265 (334)
74 3u4y_A Uncharacterized protein 99.2 9.7E-09 3.3E-13 100.5 28.2 192 120-369 41-256 (331)
75 2g8s_A Glucose/sorbosone dehyd 99.2 1E-10 3.5E-15 117.7 12.1 125 223-367 15-174 (353)
76 3scy_A Hypothetical bacterial 99.1 9.2E-08 3.1E-12 95.1 30.9 238 118-394 48-324 (361)
77 2iwa_A Glutamine cyclotransfer 99.1 2.3E-08 7.9E-13 96.1 23.9 196 121-363 22-234 (266)
78 3das_A Putative oxidoreductase 99.1 3E-09 1E-13 106.3 18.0 155 223-395 29-220 (347)
79 3u4y_A Uncharacterized protein 99.1 4.3E-07 1.5E-11 88.6 32.7 267 130-467 9-300 (331)
80 2ghs_A AGR_C_1268P; regucalcin 99.1 1.6E-08 5.5E-13 100.0 21.5 183 121-357 91-292 (326)
81 2p9w_A MAL S 1 allergenic prot 99.0 2.3E-08 7.7E-13 98.5 21.3 164 175-365 13-214 (334)
82 1ri6_A Putative isomerase YBHE 99.0 8.1E-07 2.8E-11 86.5 31.8 188 131-364 5-207 (343)
83 1ri6_A Putative isomerase YBHE 99.0 2.5E-07 8.6E-12 90.1 27.3 234 120-394 38-295 (343)
84 1jof_A Carboxy-CIS,CIS-muconat 99.0 2.5E-07 8.6E-12 92.5 27.6 241 120-394 40-328 (365)
85 1cru_A Protein (soluble quinop 98.9 9.6E-09 3.3E-13 106.8 14.3 151 223-395 24-246 (454)
86 3sre_A PON1, serum paraoxonase 98.9 2.1E-07 7.2E-12 93.2 23.3 137 226-394 112-284 (355)
87 3qqz_A Putative uncharacterize 98.9 4E-07 1.4E-11 86.9 22.4 201 174-402 26-249 (255)
88 2wg3_C Hedgehog-interacting pr 98.9 2.1E-07 7E-12 96.8 21.9 33 117-149 11-46 (463)
89 3hxj_A Pyrrolo-quinoline quino 98.8 4.4E-07 1.5E-11 88.5 22.7 217 123-403 63-281 (330)
90 3nol_A Glutamine cyclotransfer 98.8 9.4E-07 3.2E-11 84.2 23.1 186 122-357 45-245 (262)
91 1l0q_A Surface layer protein; 98.8 7.2E-06 2.5E-10 81.8 30.8 226 121-407 33-276 (391)
92 3scy_A Hypothetical bacterial 98.8 4.2E-06 1.4E-10 82.9 27.9 219 120-371 100-345 (361)
93 1l0q_A Surface layer protein; 98.7 3.3E-05 1.1E-09 76.9 32.9 181 132-372 3-196 (391)
94 3hxj_A Pyrrolo-quinoline quino 98.7 6.6E-06 2.3E-10 80.0 26.6 205 130-395 107-313 (330)
95 1nir_A Nitrite reductase; hemo 98.7 1.6E-05 5.4E-10 84.3 30.4 225 122-394 181-439 (543)
96 1pby_B Quinohemoprotein amine 98.7 8.2E-06 2.8E-10 79.0 26.1 198 121-372 35-317 (337)
97 1nir_A Nitrite reductase; hemo 98.7 8.1E-06 2.8E-10 86.6 27.6 191 126-373 144-363 (543)
98 1jof_A Carboxy-CIS,CIS-muconat 98.7 1E-05 3.5E-10 80.7 26.7 161 176-368 41-229 (365)
99 3mbr_X Glutamine cyclotransfer 98.7 1.2E-05 4E-10 75.9 25.1 188 121-357 22-224 (243)
100 3bws_A Protein LP49; two-domai 98.6 1.8E-05 6.2E-10 80.0 27.6 194 120-372 170-397 (433)
101 1jmx_B Amine dehydrogenase; ox 98.6 2.5E-05 8.7E-10 76.0 27.0 121 121-260 44-182 (349)
102 3nok_A Glutaminyl cyclase; bet 98.6 8.3E-06 2.9E-10 77.7 21.6 185 122-356 57-254 (268)
103 3bws_A Protein LP49; two-domai 98.6 3.6E-05 1.2E-09 77.7 27.9 282 121-467 124-428 (433)
104 2iwa_A Glutamine cyclotransfer 98.6 2.1E-05 7.2E-10 75.4 24.2 152 120-297 66-235 (266)
105 1qks_A Cytochrome CD1 nitrite 98.6 6.9E-05 2.4E-09 79.8 30.6 214 127-394 163-458 (567)
106 1jmx_B Amine dehydrogenase; ox 98.6 1E-05 3.6E-10 78.8 22.6 151 122-297 2-173 (349)
107 2oiz_A Aromatic amine dehydrog 98.5 2.1E-05 7.3E-10 78.7 24.2 70 121-201 52-136 (361)
108 2ymu_A WD-40 repeat protein; u 98.4 0.00083 2.8E-08 70.4 34.6 189 121-369 305-501 (577)
109 2ymu_A WD-40 repeat protein; u 98.4 0.00053 1.8E-08 71.9 32.3 192 120-369 181-378 (577)
110 3c75_H MADH, methylamine dehyd 98.4 0.00017 5.8E-09 73.9 27.5 70 227-297 120-207 (426)
111 3sjl_D Methylamine dehydrogena 98.4 0.00012 4.2E-09 73.8 24.8 137 128-287 41-206 (386)
112 3s25_A Hypothetical 7-bladed b 98.3 3.9E-05 1.3E-09 75.1 20.0 172 128-372 23-222 (302)
113 1pby_B Quinohemoprotein amine 98.3 0.00052 1.8E-08 66.1 28.1 109 176-297 35-161 (337)
114 2mad_H Methylamine dehydrogena 98.3 0.00035 1.2E-08 70.3 27.5 71 121-202 68-154 (373)
115 3mbr_X Glutamine cyclotransfer 98.3 0.00024 8.4E-09 66.8 23.8 150 121-297 66-233 (243)
116 3c75_H MADH, methylamine dehyd 98.3 0.00014 4.8E-09 74.5 24.0 203 121-371 120-408 (426)
117 3nol_A Glutamine cyclotransfer 98.2 9.9E-05 3.4E-09 70.2 19.3 149 121-296 88-253 (262)
118 2wg3_C Hedgehog-interacting pr 98.2 0.00017 6E-09 74.7 22.1 257 68-356 13-354 (463)
119 3nok_A Glutaminyl cyclase; bet 98.2 0.00014 4.6E-09 69.4 19.5 148 122-296 98-263 (268)
120 3v9f_A Two-component system se 98.1 0.0013 4.6E-08 72.3 29.1 209 121-371 314-530 (781)
121 3v9f_A Two-component system se 98.1 0.00062 2.1E-08 75.0 25.4 205 121-371 408-617 (781)
122 3q6k_A 43.2 kDa salivary prote 98.1 0.0015 5.1E-08 65.6 25.1 209 116-357 83-343 (381)
123 4a2l_A BT_4663, two-component 98.1 0.0041 1.4E-07 68.6 31.3 210 121-371 358-577 (795)
124 1mda_H Methylamine dehydrogena 98.0 0.00037 1.3E-08 70.0 20.4 100 131-252 32-156 (368)
125 3amr_A 3-phytase; beta-propell 98.0 0.0016 5.6E-08 64.4 24.1 160 223-416 125-311 (355)
126 3sjl_D Methylamine dehydrogena 98.0 0.00063 2.2E-08 68.6 21.4 203 120-377 137-375 (386)
127 2mad_H Methylamine dehydrogena 98.0 0.0063 2.1E-07 61.0 28.0 69 227-296 68-154 (373)
128 4a9v_A PHOX; hydrolase, beta-p 97.9 6.3E-05 2.2E-09 78.8 12.7 130 264-395 380-550 (592)
129 1fwx_A Nitrous oxide reductase 97.9 0.0006 2.1E-08 72.1 20.2 190 130-364 100-359 (595)
130 4a9v_A PHOX; hydrolase, beta-p 97.9 0.00016 5.5E-09 75.8 14.7 63 222-286 472-549 (592)
131 3s25_A Hypothetical 7-bladed b 97.9 0.00066 2.3E-08 66.2 18.4 172 124-367 108-294 (302)
132 2oiz_A Aromatic amine dehydrog 97.8 0.00082 2.8E-08 67.0 19.0 61 230-297 258-332 (361)
133 4a2l_A BT_4663, two-component 97.8 0.0038 1.3E-07 68.8 25.3 205 121-371 407-620 (795)
134 3ow8_A WD repeat-containing pr 97.8 0.026 8.9E-07 54.7 28.4 188 122-367 83-281 (321)
135 2ece_A 462AA long hypothetical 97.8 0.0023 7.7E-08 65.5 21.1 198 119-355 137-399 (462)
136 1qks_A Cytochrome CD1 nitrite 97.8 0.0091 3.1E-07 63.4 26.4 159 121-297 198-419 (567)
137 1r5m_A SIR4-interacting protei 97.8 0.036 1.2E-06 54.6 29.6 202 121-370 110-324 (425)
138 1gxr_A ESG1, transducin-like e 97.7 0.041 1.4E-06 52.3 31.8 196 121-371 53-261 (337)
139 3q6k_A 43.2 kDa salivary prote 97.5 0.079 2.7E-06 53.0 27.3 250 175-458 26-341 (381)
140 1gxr_A ESG1, transducin-like e 97.4 0.057 1.9E-06 51.3 24.6 182 121-362 143-333 (337)
141 1tl2_A L10, protein (tachylect 97.4 0.0091 3.1E-07 55.1 17.5 64 229-297 91-161 (236)
142 1tl2_A L10, protein (tachylect 97.4 0.00054 1.9E-08 63.2 9.3 154 225-405 40-209 (236)
143 2z3z_A Dipeptidyl aminopeptida 97.3 0.27 9.2E-06 52.7 31.2 35 120-154 82-117 (706)
144 3ow8_A WD repeat-containing pr 97.3 0.088 3E-06 50.9 24.5 183 122-363 125-318 (321)
145 3amr_A 3-phytase; beta-propell 97.3 0.0043 1.5E-07 61.4 14.7 69 227-297 181-261 (355)
146 1mda_H Methylamine dehydrogena 97.3 0.012 4.2E-07 58.9 18.3 67 227-297 262-344 (368)
147 2ece_A 462AA long hypothetical 97.2 0.076 2.6E-06 54.3 23.3 153 228-394 190-399 (462)
148 1k8k_C P40, ARP2/3 complex 41 97.1 0.19 6.6E-06 48.4 24.7 150 122-297 11-171 (372)
149 2ojh_A Uncharacterized protein 97.0 0.15 5.1E-06 47.0 22.3 145 121-296 43-203 (297)
150 4h5i_A Guanine nucleotide-exch 97.0 0.094 3.2E-06 51.7 21.5 190 121-363 135-340 (365)
151 1fwx_A Nitrous oxide reductase 96.9 0.074 2.5E-06 56.2 20.7 184 236-467 100-357 (595)
152 2ecf_A Dipeptidyl peptidase IV 96.9 0.13 4.5E-06 55.5 23.5 122 225-371 208-374 (741)
153 3zwu_A Alkaline phosphatase PH 96.9 0.011 3.8E-07 62.7 14.2 127 264-392 380-547 (592)
154 1r5m_A SIR4-interacting protei 96.9 0.4 1.4E-05 46.9 26.8 199 120-364 46-276 (425)
155 2pbi_B Guanine nucleotide-bind 96.9 0.4 1.4E-05 46.8 26.6 192 121-368 108-318 (354)
156 2hqs_A Protein TOLB; TOLB, PAL 96.8 0.41 1.4E-05 48.0 25.1 129 227-389 224-366 (415)
157 1got_B GT-beta; complex (GTP-b 96.8 0.42 1.5E-05 46.1 33.0 188 121-364 57-255 (340)
158 1got_B GT-beta; complex (GTP-b 96.8 0.37 1.3E-05 46.5 23.6 148 122-297 146-299 (340)
159 3dm0_A Maltose-binding peripla 96.7 0.86 2.9E-05 48.8 28.4 193 121-368 432-635 (694)
160 2hqs_A Protein TOLB; TOLB, PAL 96.7 0.29 9.9E-06 49.1 22.8 187 121-368 180-389 (415)
161 3azo_A Aminopeptidase; POP fam 96.7 0.6 2.1E-05 49.5 26.4 118 227-373 131-282 (662)
162 3mkq_A Coatomer beta'-subunit; 96.7 0.97 3.3E-05 48.9 28.5 148 121-297 15-170 (814)
163 2ojh_A Uncharacterized protein 96.7 0.21 7E-06 46.1 20.2 113 227-371 86-212 (297)
164 3ei3_B DNA damage-binding prot 96.7 0.31 1.1E-05 47.6 22.4 193 121-364 75-280 (383)
165 4gqb_B Methylosome protein 50; 96.7 0.21 7.3E-06 48.8 21.1 196 122-371 85-295 (344)
166 3mkq_A Coatomer beta'-subunit; 96.6 1.1 3.8E-05 48.4 29.1 192 122-369 58-263 (814)
167 1k8k_C P40, ARP2/3 complex 41 96.5 0.61 2.1E-05 44.8 26.4 190 121-364 54-272 (372)
168 3dm0_A Maltose-binding peripla 96.5 1.1 3.9E-05 47.8 31.0 151 178-367 434-594 (694)
169 2aq5_A Coronin-1A; WD40 repeat 96.5 0.22 7.7E-06 49.2 20.4 201 120-371 132-348 (402)
170 4h5i_A Guanine nucleotide-exch 96.5 0.24 8.2E-06 48.7 20.4 157 177-369 136-304 (365)
171 1vyh_C Platelet-activating fac 96.5 0.79 2.7E-05 45.6 28.8 148 120-297 109-263 (410)
172 2ecf_A Dipeptidyl peptidase IV 96.3 0.53 1.8E-05 50.6 23.5 155 120-286 37-227 (741)
173 3sfz_A APAF-1, apoptotic pepti 96.3 2.2 7.5E-05 48.8 31.3 200 120-364 616-826 (1249)
174 3zwl_B Eukaryotic translation 96.3 0.78 2.7E-05 43.7 29.8 156 121-297 76-247 (369)
175 3fm0_A Protein CIAO1; WDR39,SG 96.3 0.38 1.3E-05 46.6 20.4 190 122-363 19-222 (345)
176 3zwl_B Eukaryotic translation 96.3 0.83 2.8E-05 43.5 26.8 105 178-297 36-149 (369)
177 2pm9_A Protein WEB1, protein t 96.2 0.98 3.4E-05 44.1 26.8 219 121-388 69-317 (416)
178 3q7m_A Lipoprotein YFGL, BAMB; 96.2 1 3.4E-05 44.0 25.4 126 236-396 239-368 (376)
179 3frx_A Guanine nucleotide-bind 96.2 0.9 3.1E-05 43.4 29.6 146 178-364 69-225 (319)
180 1erj_A Transcriptional repress 96.2 1.1 3.8E-05 44.1 24.1 208 122-364 67-285 (393)
181 3odt_A Protein DOA1; ubiquitin 96.2 0.82 2.8E-05 42.5 25.6 110 228-370 145-260 (313)
182 2aq5_A Coronin-1A; WD40 repeat 96.2 0.94 3.2E-05 44.5 22.7 201 121-373 83-309 (402)
183 3q7m_A Lipoprotein YFGL, BAMB; 96.1 1.1 3.8E-05 43.6 30.3 218 129-403 102-334 (376)
184 4g56_B MGC81050 protein; prote 96.1 0.64 2.2E-05 45.4 20.9 198 121-373 141-352 (357)
185 3zwu_A Alkaline phosphatase PH 96.1 0.09 3.1E-06 55.7 15.2 62 222-285 472-548 (592)
186 4g56_B MGC81050 protein; prote 96.1 0.15 5.1E-06 50.0 16.1 198 121-372 96-308 (357)
187 1sq9_A Antiviral protein SKI8; 96.1 1.2 4E-05 43.3 22.8 126 226-368 187-325 (397)
188 3ott_A Two-component system se 96.0 0.3 1E-05 53.2 19.7 112 228-365 421-544 (758)
189 1pgu_A Actin interacting prote 96.0 1.5 5.2E-05 45.3 24.5 197 119-372 18-245 (615)
190 2z3z_A Dipeptidyl aminopeptida 96.0 1.1 3.8E-05 47.8 24.0 66 229-297 313-389 (706)
191 4ery_A WD repeat-containing pr 96.0 1.1 3.8E-05 42.1 34.4 191 121-368 25-226 (312)
192 1vyh_C Platelet-activating fac 95.9 1.6 5.3E-05 43.4 25.9 186 121-364 152-367 (410)
193 4e54_B DNA damage-binding prot 95.8 1.8 6.2E-05 43.2 24.0 152 121-297 166-325 (435)
194 1erj_A Transcriptional repress 95.7 1.9 6.3E-05 42.5 25.5 148 122-297 126-285 (393)
195 2ynn_A Coatomer subunit beta'; 95.6 1.6 5.3E-05 41.2 27.0 148 121-297 15-170 (304)
196 3ei3_B DNA damage-binding prot 95.6 1.7 5.9E-05 42.1 21.6 116 227-368 75-196 (383)
197 2xzm_R RACK1; ribosome, transl 95.5 1.8 6.2E-05 41.5 23.4 188 121-364 78-283 (343)
198 3frx_A Guanine nucleotide-bind 95.5 1.7 6E-05 41.3 29.6 185 122-366 68-267 (319)
199 2xyi_A Probable histone-bindin 95.5 2.2 7.6E-05 42.5 22.3 109 227-364 233-351 (430)
200 3ott_A Two-component system se 95.4 1.3 4.3E-05 48.2 21.7 198 121-365 147-351 (758)
201 4ery_A WD repeat-containing pr 95.4 1.8 6.2E-05 40.6 25.6 109 227-367 67-182 (312)
202 4aow_A Guanine nucleotide-bind 95.3 1.9 6.6E-05 40.5 30.3 149 178-364 90-244 (340)
203 3dwl_C Actin-related protein 2 95.3 0.52 1.8E-05 45.7 16.4 188 121-365 57-280 (377)
204 4aez_A CDC20, WD repeat-contai 95.3 2.5 8.5E-05 41.5 28.3 107 227-364 219-334 (401)
205 3o4h_A Acylamino-acid-releasin 95.1 0.52 1.8E-05 49.2 16.9 104 231-369 115-231 (582)
206 3sfz_A APAF-1, apoptotic pepti 95.1 6.1 0.00021 45.1 31.3 67 227-297 842-911 (1249)
207 1pgu_A Actin interacting prote 95.0 2.7 9.2E-05 43.3 21.8 149 122-297 67-236 (615)
208 3odt_A Protein DOA1; ubiquitin 94.9 2.4 8.2E-05 39.2 30.1 189 122-368 21-217 (313)
209 1nr0_A Actin interacting prote 94.8 4.7 0.00016 42.3 33.0 119 120-257 148-274 (611)
210 3pe7_A Oligogalacturonate lyas 94.7 1.5 5.3E-05 42.4 18.0 69 228-297 190-271 (388)
211 2pm9_A Protein WEB1, protein t 94.7 2.8 9.6E-05 40.8 20.0 156 120-298 166-336 (416)
212 1yfq_A Cell cycle arrest prote 94.6 2.4 8.2E-05 40.0 18.8 204 121-368 58-285 (342)
213 2xzm_R RACK1; ribosome, transl 94.5 3.5 0.00012 39.4 23.9 148 178-364 80-242 (343)
214 2j04_A TAU60, YPL007P, hypothe 94.5 5.7 0.00019 41.8 27.2 110 178-297 89-209 (588)
215 1sq9_A Antiviral protein SKI8; 94.5 3.7 0.00013 39.6 21.9 70 227-297 235-320 (397)
216 1nr0_A Actin interacting prote 94.4 5.9 0.0002 41.5 33.3 196 121-368 61-273 (611)
217 2vdu_B TRNA (guanine-N(7)-)-me 94.3 4.8 0.00016 40.2 22.0 69 227-297 104-178 (450)
218 3iz6_a 40S ribosomal protein R 94.3 4.3 0.00015 39.6 32.2 202 122-371 69-286 (380)
219 3iz6_a 40S ribosomal protein R 94.2 4.4 0.00015 39.4 21.6 115 227-365 251-374 (380)
220 3azo_A Aminopeptidase; POP fam 94.2 4.6 0.00016 42.5 21.5 69 227-297 243-323 (662)
221 3o4h_A Acylamino-acid-releasin 94.0 0.91 3.1E-05 47.3 15.5 67 228-296 197-273 (582)
222 3dw8_B Serine/threonine-protei 94.0 5.1 0.00017 39.4 22.4 121 227-364 179-313 (447)
223 2vdu_B TRNA (guanine-N(7)-)-me 93.9 5.7 0.0002 39.6 25.3 153 120-297 103-269 (450)
224 3dw8_B Serine/threonine-protei 93.7 5.8 0.0002 38.9 23.6 177 121-313 179-381 (447)
225 4gqb_B Methylosome protein 50; 93.6 5.5 0.00019 38.5 26.5 110 178-297 86-199 (344)
226 2pbi_B Guanine nucleotide-bind 93.6 5.5 0.00019 38.4 34.6 190 121-364 66-269 (354)
227 1xfd_A DIP, dipeptidyl aminope 93.5 4.2 0.00014 43.3 19.8 68 229-296 258-341 (723)
228 4e54_B DNA damage-binding prot 93.2 1.4 4.9E-05 43.9 14.7 114 228-367 122-241 (435)
229 3vl1_A 26S proteasome regulato 93.1 6.9 0.00024 38.0 25.7 150 177-369 59-216 (420)
230 1xfd_A DIP, dipeptidyl aminope 93.0 2.1 7.3E-05 45.6 16.5 145 121-286 18-191 (723)
231 3fm0_A Protein CIAO1; WDR39,SG 92.9 6.7 0.00023 37.5 23.6 111 228-364 19-134 (345)
232 3k26_A Polycomb protein EED; W 92.6 6.6 0.00022 37.0 18.0 158 121-297 117-316 (366)
233 3vl1_A 26S proteasome regulato 92.5 8.3 0.00028 37.5 35.8 233 69-364 57-320 (420)
234 3k26_A Polycomb protein EED; W 91.6 9 0.00031 36.0 27.3 70 227-297 117-190 (366)
235 1k32_A Tricorn protease; prote 91.4 15 0.00053 41.1 21.8 129 227-389 297-433 (1045)
236 3dwl_C Actin-related protein 2 91.1 0.96 3.3E-05 43.7 10.1 66 227-297 57-129 (377)
237 3jrp_A Fusion protein of prote 91.1 10 0.00036 35.8 23.8 112 178-297 105-238 (379)
238 2ynn_A Coatomer subunit beta'; 91.1 9.9 0.00034 35.5 24.3 192 123-371 59-265 (304)
239 2oaj_A Protein SNI1; WD40 repe 90.8 23 0.00079 39.2 24.1 209 121-369 19-246 (902)
240 4aow_A Guanine nucleotide-bind 90.8 10 0.00036 35.2 27.8 106 229-367 175-287 (340)
241 2xyi_A Probable histone-bindin 90.1 15 0.00053 36.1 24.5 114 227-364 183-307 (430)
242 1k32_A Tricorn protease; prote 90.1 6.9 0.00023 44.1 17.3 100 227-357 380-492 (1045)
243 1yfq_A Cell cycle arrest prote 90.0 12 0.00042 34.8 21.8 156 178-366 15-179 (342)
244 3jro_A Fusion protein of prote 89.4 26 0.00089 37.7 22.1 112 178-297 103-236 (753)
245 3jro_A Fusion protein of prote 89.4 26 0.00089 37.7 23.3 67 229-297 57-130 (753)
246 3lrv_A PRE-mRNA-splicing facto 88.6 17 0.00057 34.5 19.9 66 228-297 173-242 (343)
247 3lrv_A PRE-mRNA-splicing facto 88.5 17 0.00058 34.4 21.3 108 227-364 127-242 (343)
248 3jrp_A Fusion protein of prote 88.4 17 0.00057 34.3 26.6 68 229-297 59-132 (379)
249 2hes_X YDR267CP; beta-propelle 86.8 21 0.00072 33.6 22.8 149 122-297 61-228 (330)
250 2j04_A TAU60, YPL007P, hypothe 86.8 32 0.0011 36.1 18.2 112 227-366 87-211 (588)
251 1z68_A Fibroblast activation p 86.7 22 0.00075 37.6 17.8 138 123-285 19-186 (719)
252 3gre_A Serine/threonine-protei 86.5 25 0.00087 34.2 23.7 63 233-297 178-243 (437)
253 2gop_A Trilobed protease; beta 84.8 26 0.00089 32.8 18.7 61 227-296 172-250 (347)
254 4aez_A CDC20, WD repeat-contai 84.3 31 0.0011 33.4 32.4 153 178-372 138-300 (401)
255 3i2n_A WD repeat-containing pr 84.3 27 0.00091 32.5 16.0 148 127-297 176-351 (357)
256 2ad6_A Methanol dehydrogenase 83.1 47 0.0016 34.5 19.8 47 346-393 473-523 (571)
257 3mmy_A MRNA export factor; mRN 81.6 34 0.0012 31.8 24.0 65 228-297 89-158 (368)
258 3mmy_A MRNA export factor; mRN 81.2 35 0.0012 31.7 22.1 34 121-154 88-124 (368)
259 3i2n_A WD repeat-containing pr 80.8 36 0.0012 31.6 27.9 65 232-297 124-197 (357)
260 4a11_B DNA excision repair pro 80.5 40 0.0014 31.9 22.0 70 227-297 188-274 (408)
261 3f3f_A Nucleoporin SEH1; struc 80.5 35 0.0012 31.2 23.6 118 178-297 114-247 (351)
262 3v7d_B Cell division control p 80.4 46 0.0016 32.6 30.5 61 233-297 276-339 (464)
263 3pe7_A Oligogalacturonate lyas 80.4 41 0.0014 31.9 21.8 31 230-260 85-118 (388)
264 1kv9_A Type II quinohemoprotei 79.0 69 0.0023 34.0 17.7 49 345-394 466-518 (668)
265 2pm7_B Protein transport prote 78.1 42 0.0014 30.8 21.6 67 230-297 58-130 (297)
266 3gre_A Serine/threonine-protei 77.5 54 0.0018 31.8 20.8 136 227-373 216-368 (437)
267 2oit_A Nucleoporin 214KDA; NH2 77.4 15 0.00052 36.7 11.4 117 227-370 94-227 (434)
268 1kb0_A Quinohemoprotein alcoho 76.3 84 0.0029 33.4 18.9 45 347-392 487-535 (677)
269 2gop_A Trilobed protease; beta 76.0 47 0.0016 31.0 14.0 56 226-286 59-122 (347)
270 3b7f_A Glycosyl hydrolase, BNR 75.6 61 0.0021 31.4 18.2 123 228-368 117-264 (394)
271 2xdw_A Prolyl endopeptidase; a 73.7 95 0.0032 32.8 24.4 65 228-297 235-318 (710)
272 3c5m_A Oligogalacturonate lyas 70.6 47 0.0016 31.4 12.7 66 231-297 287-382 (396)
273 3vu4_A KMHSV2; beta-propeller 70.2 75 0.0026 30.1 14.5 70 227-298 197-270 (355)
274 3c5m_A Oligogalacturonate lyas 68.7 79 0.0027 29.8 18.1 64 228-297 240-327 (396)
275 4a11_B DNA excision repair pro 65.4 91 0.0031 29.3 28.2 123 228-364 144-274 (408)
276 2pm7_B Protein transport prote 65.3 47 0.0016 30.5 11.1 67 228-297 12-84 (297)
277 1z68_A Fibroblast activation p 64.7 22 0.00074 37.7 9.6 70 228-297 18-97 (719)
278 3c12_A FLGD, flagellar protein 64.3 6 0.00021 33.1 4.0 26 3-28 65-91 (138)
279 4gga_A P55CDC, cell division c 63.5 1.1E+02 0.0038 29.5 24.5 71 227-297 232-308 (420)
280 3osv_A Flagellar basal-BODY RO 63.4 6.4 0.00022 33.0 4.0 25 3-27 63-88 (138)
281 1yiq_A Quinohemoprotein alcoho 63.0 1.6E+02 0.0054 31.2 19.3 51 342-393 480-534 (689)
282 2hes_X YDR267CP; beta-propelle 62.5 1E+02 0.0034 28.7 29.6 67 227-297 109-182 (330)
283 2j04_B YDR362CP, TAU91; beta p 61.9 39 0.0013 34.7 10.6 103 233-366 318-428 (524)
284 2xbg_A YCF48-like protein; pho 61.3 1.1E+02 0.0037 28.8 21.6 66 227-294 206-274 (327)
285 1kb0_A Quinohemoprotein alcoho 60.9 1.7E+02 0.0058 30.9 20.5 16 178-193 396-411 (677)
286 2hz6_A Endoplasmic reticulum t 60.3 17 0.00059 35.3 7.2 198 129-393 8-220 (369)
287 2oit_A Nucleoporin 214KDA; NH2 58.8 1.4E+02 0.0049 29.3 19.2 56 227-283 194-255 (434)
288 3bg1_A Protein SEC13 homolog; 58.6 77 0.0026 29.3 11.4 69 228-297 16-88 (316)
289 4a5s_A Dipeptidyl peptidase 4 56.0 1.5E+02 0.0052 31.4 14.4 31 124-154 21-52 (740)
290 1yiq_A Quinohemoprotein alcoho 55.6 1.6E+02 0.0054 31.2 14.4 16 178-193 392-407 (689)
291 1w6s_A Methanol dehydrogenase 55.5 2E+02 0.0068 30.0 21.6 18 176-193 394-411 (599)
292 3v7d_B Cell division control p 54.7 1.6E+02 0.0054 28.6 24.3 108 227-368 312-424 (464)
293 4a5s_A Dipeptidyl peptidase 4 53.0 67 0.0023 34.2 11.0 56 230-285 21-79 (740)
294 1flg_A Protein (quinoprotein e 52.7 1.8E+02 0.0061 30.2 13.9 15 179-193 416-430 (582)
295 2xbg_A YCF48-like protein; pho 52.1 1.5E+02 0.0053 27.7 15.8 66 229-296 253-319 (327)
296 3b7f_A Glycosyl hydrolase, BNR 52.0 1.7E+02 0.0058 28.1 14.1 60 227-286 233-297 (394)
297 1flg_A Protein (quinoprotein e 51.5 2.2E+02 0.0076 29.4 20.2 26 347-372 496-523 (582)
298 3vu4_A KMHSV2; beta-propeller 50.2 1.7E+02 0.0057 27.5 24.2 68 269-364 197-269 (355)
299 3bg1_A Protein SEC13 homolog; 48.3 1E+02 0.0035 28.4 10.4 66 229-297 61-134 (316)
300 3f3f_A Nucleoporin SEH1; struc 48.1 1.5E+02 0.0053 26.6 31.3 66 228-297 60-141 (351)
301 2oaj_A Protein SNI1; WD40 repe 46.3 3.3E+02 0.011 29.8 21.7 156 122-297 61-240 (902)
302 2j04_B YDR362CP, TAU91; beta p 45.2 1.4E+02 0.0048 30.4 11.6 66 229-297 447-515 (524)
303 1kv9_A Type II quinohemoprotei 42.5 3.2E+02 0.011 28.6 14.8 15 178-192 384-398 (668)
304 3sbq_A Nitrous-oxide reductase 41.3 62 0.0021 33.9 7.7 71 226-298 323-407 (638)
305 1w6s_A Methanol dehydrogenase 40.0 3.4E+02 0.012 28.2 21.1 46 346-392 482-531 (599)
306 2bkl_A Prolyl endopeptidase; m 39.9 3.4E+02 0.012 28.2 23.3 63 229-297 230-302 (695)
307 1k3i_A Galactose oxidase precu 38.2 2.6E+02 0.0089 29.1 12.6 118 227-371 187-329 (656)
308 3elq_A Arylsulfate sulfotransf 37.7 3.7E+02 0.013 27.9 17.3 40 337-376 354-395 (571)
309 1xip_A Nucleoporin NUP159; bet 31.8 3.7E+02 0.013 26.2 12.3 29 223-252 85-113 (388)
310 2ad6_A Methanol dehydrogenase 30.3 4.6E+02 0.016 26.8 27.2 27 125-152 111-139 (571)
311 3elq_A Arylsulfate sulfotransf 29.5 5E+02 0.017 26.9 23.1 40 268-315 355-394 (571)
312 4ggc_A P55CDC, cell division c 28.4 3.1E+02 0.011 24.3 24.8 65 124-202 30-95 (318)
313 2xdw_A Prolyl endopeptidase; a 25.3 5.9E+02 0.02 26.4 17.1 66 229-297 339-412 (710)
314 4ggc_A P55CDC, cell division c 23.0 3.9E+02 0.013 23.6 18.1 63 228-296 70-135 (318)
No 1
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=100.00 E-value=1.6e-32 Score=285.28 Aligned_cols=296 Identities=15% Similarity=0.133 Sum_probs=219.1
Q ss_pred ceEEEeeCCCeEEEEec-----cCccCCCCCcCCCCCCcCcccCCCceEEEEcCC---CcEEEEeC-CcEEEEcC-CCeE
Q psy8782 81 SNIYLKNKPRIIKTTLG-----DGHQRPLDCKDCNGEAGPKQRLLAPVALATAPD---GSLFVGDF-NLIRRIMT-DGTV 150 (482)
Q Consensus 81 ~~~~~~~~~~~i~tv~G-----~G~~~~~~~~~~~G~~~~~~~l~~P~glavd~~---G~lyvaD~-~~Irki~~-~G~v 150 (482)
+..|.+..+.+|+|++| +|..+. ++|..+..++|..|.+|++|++ |+|||+|. ++|+++++ +|.+
T Consensus 100 ~~~F~y~~~~~VsTv~G~~~~~~g~~~~-----~dG~~~~a~~~~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v 174 (433)
T 4hw6_A 100 EAKFDYQYNYVVTTFLGKLYENNTKWDV-----LAGPFDDCGAFDNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYV 174 (433)
T ss_dssp SSCCEECCCEEEEEEECCCBTTTTBCCC-----CCEETTSCCCCSCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEE
T ss_pred eeEEEEEeeeEEeeeecceeccCCCccc-----cCCchHHhcccCCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEE
Confidence 34566778899999999 566553 6777754569999999999984 99999999 99999998 7888
Q ss_pred EEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCCC-----eEEEEcCCCccccCCCcCCCCCCCceeec
Q psy8782 151 RTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKPR-----IIKTTLGDGHQRPLDCKDCNGEAGPKQRL 225 (482)
Q Consensus 151 ~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~~-----~i~~~~g~G~~~~~~~~~~~g~~~~~~~l 225 (482)
+++++. +..|.+++++++++ ||++|..+ .+..+...+... . ......+
T Consensus 175 ~~~~~~-----------------~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~--------~-~~~~~~~ 227 (433)
T 4hw6_A 175 DIKTTN-----------------IGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFT--------E-RLSLCNA 227 (433)
T ss_dssp EEECCC-----------------CSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTC--------C-EEEEEEC
T ss_pred EEeecC-----------------CCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCee--------c-ccccccc
Confidence 887652 35699999999997 99998632 222332222111 0 0133578
Q ss_pred CCccEEEEcC-CCCEEEEEC--CcEEEEcCC-CeE-EEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCc
Q psy8782 226 LAPVALATAP-DGSLFVGDF--NLIRRIMTD-GTV-RTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMD 300 (482)
Q Consensus 226 ~~P~giavd~-~G~lyv~D~--~~I~~i~~~-G~v-~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~ 300 (482)
..|.++++|+ +|+|||+|. ++|++++++ |.+ .+++..+ ....+.+|+++|+++.|||+|..+|+|++++...
T Consensus 228 ~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~--~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~- 304 (433)
T 4hw6_A 228 RGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMD--TKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNR- 304 (433)
T ss_dssp SSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECS--CCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCT-
T ss_pred CCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccC--CCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCC-
Confidence 9999999999 899999998 799999997 877 4444332 2345778999994445999999999999998532
Q ss_pred cCCCCC---cEEEEecC-CcccCCCCCCccCCCccccccccCCcceEEE---------eCCCcEEEEECCC--EEEEcCC
Q psy8782 301 FSAPDY---NVEPAVGS-GERCLPGDEAHCGDGAPARDAKLAYPKGVAV---------SADNILYFADGTN--IRMVDRD 365 (482)
Q Consensus 301 ~~~~~g---~~~~vaG~-g~~~~~g~~~~~gdg~~a~~a~l~~P~giav---------d~~G~lyvaD~~n--Ir~i~~~ 365 (482)
..+ ...+++|. +.. + ..|| ++..++|+.|.||++ |++|+|||||..| ||+++++
T Consensus 305 ---~~~~~~~~~~~ag~~g~~------g-~~dg-~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~ 373 (433)
T 4hw6_A 305 ---ETGKLAVPYIVCGQHSSP------G-WVDG-MGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPE 373 (433)
T ss_dssp ---TTCCBCCCEEEEECTTCC------C-CBCE-EGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTT
T ss_pred ---CCcccCcEEEEEecCCCC------c-cCCC-cccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECCC
Confidence 123 34678886 322 1 2244 778899999999999 9999999999987 9999999
Q ss_pred CcEEEEEcCCCCCCCCCcCCCCceEEeccccceeEEeecCcceEEecccCCCceEEEeeceeeeeeeeeeecccceeeee
Q psy8782 366 GIVTTVIGNHMHKSHWKPIPCEGTLNIEEVSETMRDIRHTTGWACYGTGDNDHMTLIHCYGVMQDVVTSVFNNSHFLDVH 445 (482)
Q Consensus 366 G~i~ti~G~~~~~~~~~~~~~dg~l~v~~~~~~~~~l~~p~giav~~~g~n~~~~~~~~~g~~~~~~~~~~n~~~~~~~~ 445 (482)
|.+++++|.+.....+. .||. .....++..|.+
T Consensus 374 G~v~t~~G~g~~~~~G~---~dG~--------------------------------------------~~~~~~~~~P~g 406 (433)
T 4hw6_A 374 GRVTTYAGRGNSREWGY---VDGE--------------------------------------------LRSQALFNHPTS 406 (433)
T ss_dssp SEEEEEECCCTTCSSCC---BCEE--------------------------------------------TTTTCBCSSEEE
T ss_pred CCEEEEEeCCCCCcccc---CCCc--------------------------------------------cccccEeCCCcE
Confidence 99999999865211000 0110 001123445677
Q ss_pred eEEc-CCCcEEEEeCCCCeeEEeec
Q psy8782 446 FSHQ-DQDLFYFVKELPQKIRDDLD 469 (482)
Q Consensus 446 i~~~-~~g~~yi~d~~n~rIrk~~~ 469 (482)
|+++ ++|.|||||..||||||+-.
T Consensus 407 iavd~~~g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 407 IAYDMKRKCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp EEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred EEEECCCCEEEEEeCCCCEEEEEec
Confidence 7888 88999999999999999753
No 2
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.9e-31 Score=275.97 Aligned_cols=313 Identities=17% Similarity=0.180 Sum_probs=220.4
Q ss_pred eEEEeeCCCeEEEEecc----CccCCCCCcCCCCCCc-----CcccCCCceEEEEcC--CCcEEEEeC--CcEEEEcCC-
Q psy8782 82 NIYLKNKPRIIKTTLGD----GHQRPLDCKDCNGEAG-----PKQRLLAPVALATAP--DGSLFVGDF--NLIRRIMTD- 147 (482)
Q Consensus 82 ~~~~~~~~~~i~tv~G~----G~~~~~~~~~~~G~~~-----~~~~l~~P~glavd~--~G~lyvaD~--~~Irki~~~- 147 (482)
..|.++....|+|++|. |... ..+|... ..++|..|.+|++|| +++|||++. ++||+|++.
T Consensus 97 ~~F~Y~~~~~VsTl~G~~~~~g~~~-----~~dG~~~~~~~~~~~~~~~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~ 171 (496)
T 3kya_A 97 TTFSYEKKMVVGTLCGYRNNRDDQG-----WRDGPFDGPEGVKCCGFSDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKN 171 (496)
T ss_dssp SCCEECCCEEEEEEEECCCTTSCCC-----CBCEESSSSTTTSCBCCCSEEEEEEETTEEEEEEEEEETEEEEEEEETTT
T ss_pred ceEEEEEEEEEEEeeeeEcCCCcee-----ccCCcccccccccccccCCCCEEEEccCCCCEEEEEECCCCeEEEEECCC
Confidence 45667778899999993 3322 2355553 367899999999998 488999998 799999975
Q ss_pred CeEEEEEeeCCCcccCCCccccccccccCCceEEE-------ecCCCeEEEEcCCC-------eEEEE--cCCCccccCC
Q psy8782 148 GTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQ-------KGDGSNIYLKNKPR-------IIKTT--LGDGHQRPLD 211 (482)
Q Consensus 148 G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~-------~~~g~~lyi~d~~~-------~i~~~--~g~G~~~~~~ 211 (482)
+++++++..+..+ +..|.++++ +.+++.||++|... .+..+ ..+|.+...
T Consensus 172 ~~v~~l~~~~~~~-------------~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~- 237 (496)
T 3kya_A 172 RMLSSPLNINTIP-------------TNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDR- 237 (496)
T ss_dssp TEEEEEECCTTSS-------------CSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTT-
T ss_pred CEEEEEEccCccc-------------cCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeec-
Confidence 5888887654322 356999999 99998899998653 24444 232333100
Q ss_pred CcCCCCCCCceeecCCccEEEEcC-CCCEEEEEC--CcEEEEcCC--------CeE------------EEEEeeccCCCC
Q psy8782 212 CKDCNGEAGPKQRLLAPVALATAP-DGSLFVGDF--NLIRRIMTD--------GTV------------RTVVRLNVTRVA 268 (482)
Q Consensus 212 ~~~~~g~~~~~~~l~~P~giavd~-~G~lyv~D~--~~I~~i~~~--------G~v------------~~~~g~~~~~~~ 268 (482)
........+..|.+++++| ++.|||+|. ++|+|++++ |.+ ..++.. ..-.
T Consensus 238 -----~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~--~~~~ 310 (496)
T 3kya_A 238 -----SDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTI--ADPS 310 (496)
T ss_dssp -----SCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEEC--SSSS
T ss_pred -----ccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEec--CCCC
Confidence 0001234678999999999 789999999 689999975 544 123322 2235
Q ss_pred ceeeEEEeCCCCe-EEEEeCCCCEEEEEecCCccCCCCCcE---EEEecC-CcccCCCCCCccCCCccccccccCCcc-e
Q psy8782 269 YRYHIAYSPLDGT-LYISDPESHQILRVKNAMDFSAPDYNV---EPAVGS-GERCLPGDEAHCGDGAPARDAKLAYPK-G 342 (482)
Q Consensus 269 ~p~giavd~~~g~-lyVaD~~n~~I~~~~~~~~~~~~~g~~---~~vaG~-g~~~~~g~~~~~gdg~~a~~a~l~~P~-g 342 (482)
+|++||++| +|+ |||+|+.+|+|+|++... ..+.+ .+++|. +.. + ..|| ++..++|+.|. +
T Consensus 311 ~p~~ia~~p-~G~~lYvaD~~~h~I~kid~dg----~~~~~~~~~~~aG~~g~~------G-~~DG-~~~~a~f~~P~~g 377 (496)
T 3kya_A 311 WEFQIFIHP-TGKYAYFGVINNHYFMRSDYDE----IKKEFITPYNFVGGYKQS------G-YRDD-VGTEARMNNPCQG 377 (496)
T ss_dssp CCEEEEECT-TSSEEEEEETTTTEEEEEEEET----TTTEECCCEEEEEBTTBC------C-CBCC-BGGGCBCSSEEEE
T ss_pred CceEEEEcC-CCCEEEEEeCCCCEEEEEecCC----CcceecccEEecCCCCCC------c-ccCC-cccccccCCCeEE
Confidence 799999999 665 999999999999988432 12233 688886 332 2 3365 88999999999 8
Q ss_pred EEEe-------CCCcEEEEECCC--EEEEcCCCcEEEEEcCCCCCCCCCcCCCCceEEeccccceeEEeecCcceEEecc
Q psy8782 343 VAVS-------ADNILYFADGTN--IRMVDRDGIVTTVIGNHMHKSHWKPIPCEGTLNIEEVSETMRDIRHTTGWACYGT 413 (482)
Q Consensus 343 iavd-------~~G~lyvaD~~n--Ir~i~~~G~i~ti~G~~~~~~~~~~~~~dg~l~v~~~~~~~~~l~~p~giav~~~ 413 (482)
++++ ++|+|||||..| ||+++++|.++|++|.+..... .+.. +.|-.
T Consensus 378 v~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~G~v~TiaG~g~~~~~-~~~~-------------------~~G~~---- 433 (496)
T 3kya_A 378 VFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEGIVSTYAGRGASTSL-ADGN-------------------QWGTD---- 433 (496)
T ss_dssp EEEECTTCCSSCCEEEEEEEGGGTEEEEECTTCBEEEEEESCTTHHH-HHSC-------------------SCCCC----
T ss_pred EEEccccccccCCCeEEEEECCCCEEEEEeCCCCEEEEecccccccc-cCcc-------------------ccccC----
Confidence 8998 789999999988 9999999999999998764200 0000 00000
Q ss_pred cCCCceEEEeeceeeeeeeeeeecccceeeeeeEEcCC-CcEEEEeCCCCeeEEeeccceee
Q psy8782 414 GDNDHMTLIHCYGVMQDVVTSVFNNSHFLDVHFSHQDQ-DLFYFVKELPQKIRDDLDELKLS 474 (482)
Q Consensus 414 g~n~~~~~~~~~g~~~~~~~~~~n~~~~~~~~i~~~~~-g~~yi~d~~n~rIrk~~~~~~~~ 474 (482)
+| .....+++..|.+|+++++ |.|||||..||||||+-.+-+.+
T Consensus 434 -----------dG------~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~ 478 (496)
T 3kya_A 434 -----------DG------DLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEEN 478 (496)
T ss_dssp -----------CE------ETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC-
T ss_pred -----------CC------CchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcc
Confidence 00 0012244556777888875 99999999999999987766554
No 3
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=100.00 E-value=1.2e-30 Score=269.37 Aligned_cols=296 Identities=18% Similarity=0.214 Sum_probs=218.3
Q ss_pred ceEEEeeCCCeEEEEeccCccCCCCCcCCCCCCcCcccCCCceEEEEcCCCcEEEEeC--CcEEEEcCC-CeEEEEEeeC
Q psy8782 81 SNIYLKNKPRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF--NLIRRIMTD-GTVRTVVRLK 157 (482)
Q Consensus 81 ~~~~~~~~~~~i~tv~G~G~~~~~~~~~~~G~~~~~~~l~~P~glavd~~G~lyvaD~--~~Irki~~~-G~v~ti~g~g 157 (482)
+..|.++.+..|+|++|.+..+. .++|.. ..++|..|.+|++|++|+||++|. ++|++++++ +.+.+++..+
T Consensus 97 ~~~F~y~~~~~v~tv~G~~~~~~----~~dG~~-~~a~~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~ 171 (409)
T 3hrp_A 97 DGTFKYEQAQNVSTISGSASKDG----NDDGDL-ASAKFKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF 171 (409)
T ss_dssp SSCEEECCCEEEEEEEECTTCCS----CCCBST-TTCCCCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC
T ss_pred eeeEEEecccEEEEeecccCCCc----cCCCcH-HHcccCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC
Confidence 34677788899999999877654 466765 467999999999999999999998 899999987 6787776542
Q ss_pred CCcccCCCccccccccccCCceEEEecCCCeEEEEcCCC--eEEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcC
Q psy8782 158 NQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKPR--IIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAP 235 (482)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~~--~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~ 235 (482)
..|. ++++++++.||+++..+ .+..+...+......... .....+..|.++++++
T Consensus 172 -----------------~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~-----~~~~~~~~p~~iav~p 228 (409)
T 3hrp_A 172 -----------------KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQ-----LGSTFSGKIGAVALDE 228 (409)
T ss_dssp -----------------CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEE-----CCTTSCSCCCBCEECT
T ss_pred -----------------CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeee-----ccchhcCCcEEEEEeC
Confidence 2366 88888888899988633 555544332211000000 0011467899999999
Q ss_pred -CCCEEEEEC-CcEEEEcCCCeEEEEE-eecc--CCCCcee-eEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEE
Q psy8782 236 -DGSLFVGDF-NLIRRIMTDGTVRTVV-RLNV--TRVAYRY-HIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVE 309 (482)
Q Consensus 236 -~G~lyv~D~-~~I~~i~~~G~v~~~~-g~~~--~~~~~p~-giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~ 309 (482)
+|.||++|. ++|+++++++...+++ +... .....|. +|+++|.++.|||+|..+++|++++ .+|.+.
T Consensus 229 ~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~-------~~g~~~ 301 (409)
T 3hrp_A 229 TEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKIT-------PDGECE 301 (409)
T ss_dssp TSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEEC-------TTCCEE
T ss_pred CCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEe-------cCCCEE
Confidence 899999998 7899999875433333 3211 1112366 9999997799999999999999998 688899
Q ss_pred EEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEEC-CC--EEEEc-CCCcEEEEEcCCCCCCCCCcCC
Q psy8782 310 PAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADG-TN--IRMVD-RDGIVTTVIGNHMHKSHWKPIP 385 (482)
Q Consensus 310 ~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~-~n--Ir~i~-~~G~i~ti~G~~~~~~~~~~~~ 385 (482)
+++|.+.. ...+|| ++..++|..|.||++|++|+|||+|. .+ ||+++ ++|.+++++|.+.....
T Consensus 302 ~~~g~~~~------~g~~dg-~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~----- 369 (409)
T 3hrp_A 302 WFCGSATQ------KTVQDG-LREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQ----- 369 (409)
T ss_dssp EEEECTTC------CSCBCE-EGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSC-----
T ss_pred EEEeCCCC------CCcCCC-cccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCc-----
Confidence 99987521 123566 77889999999999999999999999 76 99999 89999999987543110
Q ss_pred CCceEEeccccceeEEeecCcceEEecccCCCceEEEeeceeeeeeeeeeecccceeeeeeEEcCCCcEEEEeCCCCeeE
Q psy8782 386 CEGTLNIEEVSETMRDIRHTTGWACYGTGDNDHMTLIHCYGVMQDVVTSVFNNSHFLDVHFSHQDQDLFYFVKELPQKIR 465 (482)
Q Consensus 386 ~dg~l~v~~~~~~~~~l~~p~giav~~~g~n~~~~~~~~~g~~~~~~~~~~n~~~~~~~~i~~~~~g~~yi~d~~n~rIr 465 (482)
.+|. .....+..|.+++++++|.|||+|..|+|||
T Consensus 370 ~~g~---------------------------------------------~~~~~~~~P~giavd~~g~lyVad~~n~~Ir 404 (409)
T 3hrp_A 370 IDGT---------------------------------------------PLEATFNYPYDICYDGEGGYWIAEAWGKAIR 404 (409)
T ss_dssp CCBS---------------------------------------------TTTCCBSSEEEEEECSSSEEEEEESTTCEEE
T ss_pred CCCC---------------------------------------------hhceEeCCceEEEEcCCCCEEEEECCCCeEE
Confidence 0110 0012233566778888899999999999999
Q ss_pred Eee
Q psy8782 466 DDL 468 (482)
Q Consensus 466 k~~ 468 (482)
|+-
T Consensus 405 ~i~ 407 (409)
T 3hrp_A 405 KYA 407 (409)
T ss_dssp EEE
T ss_pred EEE
Confidence 974
No 4
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=99.98 E-value=9.6e-31 Score=271.72 Aligned_cols=295 Identities=18% Similarity=0.220 Sum_probs=216.1
Q ss_pred eEEEeeCCCeEEEEec-----cCccCCCCCcCCCCCCcCcccCCCceEEEEcC--CCcEEEEeC-CcEEEEcCCC-eEEE
Q psy8782 82 NIYLKNKPRIIKTTLG-----DGHQRPLDCKDCNGEAGPKQRLLAPVALATAP--DGSLFVGDF-NLIRRIMTDG-TVRT 152 (482)
Q Consensus 82 ~~~~~~~~~~i~tv~G-----~G~~~~~~~~~~~G~~~~~~~l~~P~glavd~--~G~lyvaD~-~~Irki~~~G-~v~t 152 (482)
..|.++++.+|+|++| +|..+. ++|.....++|..|.+|++|| +|+|||+|. ++|+++++++ .+++
T Consensus 99 ~~F~y~~~~~VsT~~G~~~~~~g~~g~-----~dG~~~~~~~~~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~ 173 (430)
T 3tc9_A 99 EKFVYQKKMLVTTFLGTMYDGNTKYDL-----KDGPFDDCGGFGGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST 173 (430)
T ss_dssp SCCEECCCEEEEEEECCCBTTTTBCCB-----CCEEGGGCBCCSCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE
T ss_pred eEEEEEEEeEEEEeeeeEEccCCCccc-----cCCCHHHccCCCCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE
Confidence 4566677899999999 455543 677665577899999999996 599999999 9999999876 6676
Q ss_pred EEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCC-----CeEEEEcCCCccccCCCcCCCCCCCceeecCC
Q psy8782 153 VVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKP-----RIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLA 227 (482)
Q Consensus 153 i~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~-----~~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~ 227 (482)
++.. ...|.+++++++++.||++|.. ..+..+...|..... .....+..
T Consensus 174 ~~~~-----------------~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~---------~~l~~~~~ 227 (430)
T 3tc9_A 174 VYSG-----------------LSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVI---------TELTKGQN 227 (430)
T ss_dssp EECC-----------------CSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSE---------EEEEECSS
T ss_pred EecC-----------------CCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeee---------eeeccCCC
Confidence 6541 3469999999999889999862 234444444432210 12346889
Q ss_pred ccEEEEcC-CCCEEEEEC--CcEEEEcCCCeEE-EEEeeccCCCCceeeEEEeCCCCe-EEEEeCCCCEEEEEecCCccC
Q psy8782 228 PVALATAP-DGSLFVGDF--NLIRRIMTDGTVR-TVVRLNVTRVAYRYHIAYSPLDGT-LYISDPESHQILRVKNAMDFS 302 (482)
Q Consensus 228 P~giavd~-~G~lyv~D~--~~I~~i~~~G~v~-~~~g~~~~~~~~p~giavd~~~g~-lyVaD~~n~~I~~~~~~~~~~ 302 (482)
|.++++++ +|.|||+|. ++|+++++++... .++.. ....+|++|+++| +|+ |||+|..+++|++++...
T Consensus 228 p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~--~~~~~P~gia~~p-dG~~lyv~d~~~~~I~~~~~d~--- 301 (430)
T 3tc9_A 228 CNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTI--QDSGWEFHIQFHP-SGNYAYIVVVNQHYILRSDYDW--- 301 (430)
T ss_dssp CCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEEC--SSSSCCEEEEECT-TSSEEEEEETTTTEEEEEEEET---
T ss_pred ceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEc--CCCCcceeEEEcC-CCCEEEEEECCCCEEEEEeCCc---
Confidence 99999999 899999998 7999999987654 44332 2346899999999 665 999999999999998532
Q ss_pred CCCC---cEEEEecC-CcccCCCCCCccCCCccccccccCCcc-eEEEe--------CCCcEEEEECCC--EEEEcCCCc
Q psy8782 303 APDY---NVEPAVGS-GERCLPGDEAHCGDGAPARDAKLAYPK-GVAVS--------ADNILYFADGTN--IRMVDRDGI 367 (482)
Q Consensus 303 ~~~g---~~~~vaG~-g~~~~~g~~~~~gdg~~a~~a~l~~P~-giavd--------~~G~lyvaD~~n--Ir~i~~~G~ 367 (482)
..+ .+.+++|. +.. + ..|| ++..++|+.|. |++++ ++|+|||||..| ||+++++|.
T Consensus 302 -~~~~~~~~~~~ag~~g~~------g-~~dg-~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~~G~ 372 (430)
T 3tc9_A 302 -KTKRLTTPYIVCGQQGAK------D-WVDG-VGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTPQGR 372 (430)
T ss_dssp -TTTEECCCEEEEECTTCB------C-CBCE-EGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECTTSE
T ss_pred -ccccccceEEEeccCCCC------C-CCCC-CCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECCCCc
Confidence 112 25677875 221 1 2354 67788999999 89994 669999999987 999999999
Q ss_pred EEEEEcCCCCCCCCCcCCCCceEEeccccceeEEeecCcceEEecccCCCceEEEeeceeeeeeeeeeecccceeeeeeE
Q psy8782 368 VTTVIGNHMHKSHWKPIPCEGTLNIEEVSETMRDIRHTTGWACYGTGDNDHMTLIHCYGVMQDVVTSVFNNSHFLDVHFS 447 (482)
Q Consensus 368 i~ti~G~~~~~~~~~~~~~dg~l~v~~~~~~~~~l~~p~giav~~~g~n~~~~~~~~~g~~~~~~~~~~n~~~~~~~~i~ 447 (482)
+++++|.+.....+ ..||. .....++..|.+|+
T Consensus 373 v~~~~g~g~~~~~G---~~dG~--------------------------------------------~~~~~~~~~P~gia 405 (430)
T 3tc9_A 373 VTTFAGRGSNGTSG---YNDGD--------------------------------------------LRQEARFNHPEGIV 405 (430)
T ss_dssp EEEEEECCTTSSSS---CBCEE--------------------------------------------TTTTCBCSSEEEEE
T ss_pred EEEEEeCCCCCCCc---ccCCC--------------------------------------------chhhcEeCCCcEEE
Confidence 99999986421110 00110 00112344566777
Q ss_pred EcC-CCcEEEEeCCCCeeEEeec
Q psy8782 448 HQD-QDLFYFVKELPQKIRDDLD 469 (482)
Q Consensus 448 ~~~-~g~~yi~d~~n~rIrk~~~ 469 (482)
+++ +|.|||+|..||||||+-.
T Consensus 406 vd~~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 406 YDEERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp EETTTTEEEEEEGGGTEEEEEEE
T ss_pred EECCCCEEEEEECCCCeEEEEcc
Confidence 776 6999999999999999753
No 5
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.94 E-value=9.4e-25 Score=217.88 Aligned_cols=276 Identities=15% Similarity=0.185 Sum_probs=180.6
Q ss_pred CcccCCCceEEEEcCCCcEEEEeC--CcEEEEcCCCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEE
Q psy8782 115 PKQRLLAPVALATAPDGSLFVGDF--NLIRRIMTDGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLK 192 (482)
Q Consensus 115 ~~~~l~~P~glavd~~G~lyvaD~--~~Irki~~~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~ 192 (482)
...+|..|.+|++|++|+|||++. ++++..+.++... +.. ....|. ..+.+++.
T Consensus 19 ~~~~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~---------~~~---------~~~~~~------~~~~i~~~ 74 (329)
T 3fvz_A 19 VYLLPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFV---------YQQ---------RGLGPI------EEDTILVI 74 (329)
T ss_dssp GGCCCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSC---------BSC---------GGGCSC------CSCCEEEE
T ss_pred hceecCCceEEEECCCCCEEEEeCCCCeEEeeccCccee---------ecc---------cccccc------cCCcEEEE
Confidence 367899999999999999999998 4443322111100 000 001111 12245555
Q ss_pred cCC-CeEEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC--CcEEEEcCCCe--EEEEEee-----
Q psy8782 193 NKP-RIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF--NLIRRIMTDGT--VRTVVRL----- 262 (482)
Q Consensus 193 d~~-~~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~--~~I~~i~~~G~--v~~~~g~----- 262 (482)
|.. +.+....+ ...|..|.+|+++++|+|||+|. ++|++++++|+ ....++.
T Consensus 75 d~~~g~~~~~~~------------------~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g 136 (329)
T 3fvz_A 75 DPNNAEILQSSG------------------KNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPG 136 (329)
T ss_dssp CTTTCCEEEEEC------------------TTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCC
T ss_pred ECCCCeEEeccC------------------CCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCC
Confidence 542 33322111 13467899999999999999999 79999999997 3444432
Q ss_pred -ccCCCCceeeEEEeCCCCeEEEEeC-CCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCc
Q psy8782 263 -NVTRVAYRYHIAYSPLDGTLYISDP-ESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYP 340 (482)
Q Consensus 263 -~~~~~~~p~giavd~~~g~lyVaD~-~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P 340 (482)
....+..|.+|+++|.++.|||+|. .+++|++++ ++|.....++.. +.+..+..++|..|
T Consensus 137 ~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-------~~g~~~~~~~~~-----------g~~~~~~~~~~~~p 198 (329)
T 3fvz_A 137 SDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-------PSGKFVTQWGEE-----------SSGSSPRPGQFSVP 198 (329)
T ss_dssp CSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-------TTSCEEEEECEE-----------CCSSSCCTTEESCE
T ss_pred CCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-------CCCCEEEEeccC-----------CCCCCCCCcccCCC
Confidence 1356779999999987899999997 799999999 578876666532 22223445779999
Q ss_pred ceEEEeCC-CcEEEEECCC--EEEEcCC-CcEEEEEcCCCCCCCCCcCCCCceEEeccccceeEEee-cCcceEEeccc-
Q psy8782 341 KGVAVSAD-NILYFADGTN--IRMVDRD-GIVTTVIGNHMHKSHWKPIPCEGTLNIEEVSETMRDIR-HTTGWACYGTG- 414 (482)
Q Consensus 341 ~giavd~~-G~lyvaD~~n--Ir~i~~~-G~i~ti~G~~~~~~~~~~~~~dg~l~v~~~~~~~~~l~-~p~giav~~~g- 414 (482)
.+|++|++ |+|||+|..+ |++++++ |++...+........ + ..+. .| |+++..+|
T Consensus 199 ~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~--~----------------~~~~~~p-g~~~~~~g~ 259 (329)
T 3fvz_A 199 HSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRN--V----------------FAISYIP-GFLFAVNGK 259 (329)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTC--E----------------EEEEEET-TEEEEEECC
T ss_pred cEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCC--c----------------ceeeecC-CEEEEeCCC
Confidence 99999998 9999999987 9999997 987766644322111 0 0011 13 44443332
Q ss_pred ------CCCceEEEee-ceeeeeeeeeeecccceeeeeeEEcCCCcEEEEeCCCCeeEEeecc
Q psy8782 415 ------DNDHMTLIHC-YGVMQDVVTSVFNNSHFLDVHFSHQDQDLFYFVKELPQKIRDDLDE 470 (482)
Q Consensus 415 ------~n~~~~~~~~-~g~~~~~~~~~~n~~~~~~~~i~~~~~g~~yi~d~~n~rIrk~~~~ 470 (482)
.+.++.++.. .+.... ........+..|.+|+++++|.+||+|..++||+++-.+
T Consensus 260 ~~v~~~~~~~v~~~~~~~g~~~~-~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 260 PYFGDQEPVQGFVMNFSSGEIID-VFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp CCTTCSCCCCEEEEETTTCCEEE-EECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred EEeccCCCcEEEEEEcCCCeEEE-EEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence 2335555542 222111 111113445668899999999999999999999997644
No 6
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=8.6e-25 Score=228.13 Aligned_cols=264 Identities=15% Similarity=0.133 Sum_probs=177.3
Q ss_pred CCeEEecCC---ceEEEeeCCCeEEEEeccCccCCCCCcCCCCCCcCcccCCCceEEEE-------cCCCc-EEEEeC-C
Q psy8782 72 EGILQKGDG---SNIYLKNKPRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALAT-------APDGS-LFVGDF-N 139 (482)
Q Consensus 72 ~gil~~gdG---~~~~~~~~~~~i~tv~G~G~~~~~~~~~~~G~~~~~~~l~~P~glav-------d~~G~-lyvaD~-~ 139 (482)
.+.||..+. .++.++.....+++++..+ ...+.+|.+|++ +++|. |||+|. +
T Consensus 151 ~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~----------------~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~ 214 (496)
T 3kya_A 151 KDHLYICYDGHKAIQLIDLKNRMLSSPLNIN----------------TIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYD 214 (496)
T ss_dssp EEEEEEEEETEEEEEEEETTTTEEEEEECCT----------------TSSCSBEEEEEECCCBTTTBCTTCEEEEEECCC
T ss_pred CCEEEEEECCCCeEEEEECCCCEEEEEEccC----------------ccccCCCcEEEEeecccccCCCCCEEEEEeCCC
Confidence 444544332 3444555666677765422 125778999999 99998 999998 3
Q ss_pred -c------EEEEcC--CCeEE------EEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcC-CCeEEEEcC
Q psy8782 140 -L------IRRIMT--DGTVR------TVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNK-PRIIKTTLG 203 (482)
Q Consensus 140 -~------Irki~~--~G~v~------ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~-~~~i~~~~g 203 (482)
+ |.+++. +|.+. ++. ...+|.+++++++++.||+++. ++.+..+.-
T Consensus 215 ~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~------------------~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~ 276 (496)
T 3kya_A 215 GKGDESPSVYIIKRNADGTFDDRSDIQLIA------------------AYKQCNGATIHPINGELYFNSYEKGQVFRLDL 276 (496)
T ss_dssp TTGGGEEEEEEEECCTTSCCSTTSCEEEEE------------------EESCCCCEEECTTTCCEEEEETTTTEEEEECH
T ss_pred CCcccCceEEEEecCCCCceeecccceeec------------------cCCCceEEEEcCCCCeEEEEECCCCEEEEEec
Confidence 2 666643 33432 111 1357999999998899999985 444554432
Q ss_pred --------CCcc-ccCCCcCCCC--CCCceeecCCccEEEEcCCCC-EEEEEC--CcEEEEcCCCe---E---EEEEee-
Q psy8782 204 --------DGHQ-RPLDCKDCNG--EAGPKQRLLAPVALATAPDGS-LFVGDF--NLIRRIMTDGT---V---RTVVRL- 262 (482)
Q Consensus 204 --------~G~~-~~~~~~~~~g--~~~~~~~l~~P~giavd~~G~-lyv~D~--~~I~~i~~~G~---v---~~~~g~- 262 (482)
++.. .+......+. .......-..|.+|+++|+|+ |||+|+ |+|+|++.++. + .+++|.
T Consensus 277 ~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~ 356 (496)
T 3kya_A 277 VDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGY 356 (496)
T ss_dssp HHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBT
T ss_pred ccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCC
Confidence 3332 1000000000 000001124689999999998 899999 89999987763 3 577775
Q ss_pred c----------cCCCCcee-eEEEeC------CCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCccc--CCCCC
Q psy8782 263 N----------VTRVAYRY-HIAYSP------LDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERC--LPGDE 323 (482)
Q Consensus 263 ~----------~~~~~~p~-giavd~------~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~--~~g~~ 323 (482)
+ .++|++|. +++++. .+++|||||+.||||++++ ++|.+++++|.+..+ .++..
T Consensus 357 g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-------~~G~v~TiaG~g~~~~~~~~~~ 429 (496)
T 3kya_A 357 KQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-------PEGIVSTYAGRGASTSLADGNQ 429 (496)
T ss_dssp TBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-------TTCBEEEEEESCTTHHHHHSCS
T ss_pred CCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-------CCCCEEEEecccccccccCccc
Confidence 1 35789999 889972 2789999999999999998 699999999987642 11111
Q ss_pred CccCCCccccccccCCcceEEEeCC-CcEEEEECCC--EEEEcCCCcEEEEEcCCCC
Q psy8782 324 AHCGDGAPARDAKLAYPKGVAVSAD-NILYFADGTN--IRMVDRDGIVTTVIGNHMH 377 (482)
Q Consensus 324 ~~~gdg~~a~~a~l~~P~giavd~~-G~lyvaD~~n--Ir~i~~~G~i~ti~G~~~~ 377 (482)
....||.++.+++|+.|.|||+|++ |+|||||..| ||++++++.++. +|.+..
T Consensus 430 ~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~-~~~~~~ 485 (496)
T 3kya_A 430 WGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENV-AGDENI 485 (496)
T ss_dssp CCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC---------
T ss_pred cccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCccc-ccCCCC
Confidence 1224777889999999999999996 9999999988 999999888653 455443
No 7
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=99.92 E-value=1.7e-23 Score=217.31 Aligned_cols=276 Identities=13% Similarity=0.094 Sum_probs=185.6
Q ss_pred EEEEEeecccccccccc---ccccccceecccCCCeEEecC---CceEEEeeCCCeEEEEec-cCccCCCCCcCCCCCCc
Q psy8782 42 LQTTKLSGHDMSISEIG---GWNLDIHHRYNFHEGILQKGD---GSNIYLKNKPRIIKTTLG-DGHQRPLDCKDCNGEAG 114 (482)
Q Consensus 42 ~~~~~l~g~~~~~s~~g---gw~l~~~h~~~~~~gil~~gd---G~~~~~~~~~~~i~tv~G-~G~~~~~~~~~~~G~~~ 114 (482)
....+|.|-..+...-. .-++.....|..|.++....+ |+.++.+.. ..|..+.- +|....+
T Consensus 109 ~~VsTv~G~~~~~~g~~~~~dG~~~~a~~~~~P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~v~~~---------- 177 (433)
T 4hw6_A 109 YVVTTFLGKLYENNTKWDVLAGPFDDCGAFDNIWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQYVDIK---------- 177 (433)
T ss_dssp EEEEEEECCCBTTTTBCCCCCEETTSCCCCSCCCEEEECTTTTTCEEEEECBT-SCEEEEETTTTEEEEE----------
T ss_pred eEEeeeecceeccCCCccccCCchHHhcccCCCceEEEccccCCCEEEEEeCC-CCEEEEECCCCEEEEe----------
Confidence 34567888312222112 233444445666777777642 444433333 55555543 2222111
Q ss_pred CcccCCCceEEEEcCCCcEEEEeC-C-----cEEEEcCCCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCe
Q psy8782 115 PKQRLLAPVALATAPDGSLFVGDF-N-----LIRRIMTDGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSN 188 (482)
Q Consensus 115 ~~~~l~~P~glavd~~G~lyvaD~-~-----~Irki~~~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~ 188 (482)
...+..|.+|++|++|+|||+|. + .+..+++++... .. .....+..|.+++++++.++
T Consensus 178 -~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~-----------~~----~~~~~~~~P~giavd~~~G~ 241 (433)
T 4hw6_A 178 -TTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFT-----------ER----LSLCNARGAKTCAVHPQNGK 241 (433)
T ss_dssp -CCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTC-----------CE----EEEEECSSBCCCEECTTTCC
T ss_pred -ecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCee-----------cc----ccccccCCCCEEEEeCCCCe
Confidence 12577899999999999999997 2 244444432211 00 00112467999999997779
Q ss_pred EEEEcC-CCeEEEEcCC-Ccc-ccCCCcCCCCCCCceeecCCccEEEEcCCCC-EEEEEC--CcEEEEcCC---Ce---E
Q psy8782 189 IYLKNK-PRIIKTTLGD-GHQ-RPLDCKDCNGEAGPKQRLLAPVALATAPDGS-LFVGDF--NLIRRIMTD---GT---V 256 (482)
Q Consensus 189 lyi~d~-~~~i~~~~g~-G~~-~~~~~~~~~g~~~~~~~l~~P~giavd~~G~-lyv~D~--~~I~~i~~~---G~---v 256 (482)
||++|. ++.|..+... |.. .... .......|.+|+++++|+ |||+|. ++|++++.+ +. .
T Consensus 242 lyv~d~~~~~V~~~d~~~g~~~~~~~---------~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~ 312 (433)
T 4hw6_A 242 IYYTRYHHAMISSYDPATGTLTEEEV---------MMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVP 312 (433)
T ss_dssp EEECBTTCSEEEEECTTTCCEEEEEE---------ECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCC
T ss_pred EEEEECCCCEEEEEECCCCeEEEEEe---------ccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcE
Confidence 999985 4566666543 543 1100 001123456899999997 999999 899999866 32 3
Q ss_pred EEEEee-c----------cCCCCceeeEEE---------eCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCc
Q psy8782 257 RTVVRL-N----------VTRVAYRYHIAY---------SPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGE 316 (482)
Q Consensus 257 ~~~~g~-~----------~~~~~~p~giav---------d~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~ 316 (482)
.+++|. + ..+|.+|.+|++ ++ +|+|||+|..+|||++++ ++|.+.+++|.+.
T Consensus 313 ~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~-~g~lyvaD~~n~~I~~~~-------~~G~v~t~~G~g~ 384 (433)
T 4hw6_A 313 YIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEED-EYDFYFCDRDSHTVRVLT-------PEGRVTTYAGRGN 384 (433)
T ss_dssp EEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSC-CEEEEEEETTTTEEEEEC-------TTSEEEEEECCCT
T ss_pred EEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCC-CCcEEEEECCCCEEEEEC-------CCCCEEEEEeCCC
Confidence 466664 1 246889999999 76 899999999999999998 7999999999876
Q ss_pred ccCCCCCCccCCCccccccccCCcceEEEe-CCCcEEEEECCC--EEEEcCC
Q psy8782 317 RCLPGDEAHCGDGAPARDAKLAYPKGVAVS-ADNILYFADGTN--IRMVDRD 365 (482)
Q Consensus 317 ~~~~g~~~~~gdg~~a~~a~l~~P~giavd-~~G~lyvaD~~n--Ir~i~~~ 365 (482)
.|..| ..||.++..++|++|.|||+| ++|+|||||..| ||+|+++
T Consensus 385 ~~~~G----~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 385 SREWG----YVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp TCSSC----CBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCccc----cCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 43322 256667888999999999999 899999999988 9999764
No 8
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.92 E-value=2.2e-22 Score=217.78 Aligned_cols=334 Identities=21% Similarity=0.260 Sum_probs=229.1
Q ss_pred ccCCCeEEecCCceEEEe-eCCCeEEEEeccCccCCCCCcCCCCCCcCcccCCCceEEEEcCC-CcEEEEeC---CcEEE
Q psy8782 69 NFHEGILQKGDGSNIYLK-NKPRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPD-GSLFVGDF---NLIRR 143 (482)
Q Consensus 69 ~~~~gil~~gdG~~~~~~-~~~~~i~tv~G~G~~~~~~~~~~~G~~~~~~~l~~P~glavd~~-G~lyvaD~---~~Irk 143 (482)
..++|+...-.+..+++. .....|..+.-+|..+.. .....|..|.+|++||. |.||++|. .+|.|
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~---------l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r 154 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV---------LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIER 154 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE---------EECSSCSCCCCEEEETTTTEEEEEECSSSCEEEE
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEE---------EEeCCCCCCceEEEecCCCeEEEeccCCCCEEEE
Confidence 346677776655554444 445667666555543211 01356889999999985 88999996 69999
Q ss_pred EcCCCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcC-CCeEEEEcCCCccccCCCcCCCCCCCce
Q psy8782 144 IMTDGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNK-PRIIKTTLGDGHQRPLDCKDCNGEAGPK 222 (482)
Q Consensus 144 i~~~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~-~~~i~~~~g~G~~~~~~~~~~~g~~~~~ 222 (482)
.+.+|...+.+.... ...|+|++++.++++||++|. ...|..+.-+|.....- ..
T Consensus 155 ~~~dG~~~~~l~~~~---------------~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~---------~~ 210 (619)
T 3s94_A 155 AGMDGSSRFIIINSE---------------IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAV---------VK 210 (619)
T ss_dssp EETTSCSCEEEECSS---------------CSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-------------
T ss_pred EECCCCceEEEEeCC---------------CCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEE---------Ee
Confidence 999987544332211 356999999999999999996 45677766555433210 22
Q ss_pred eecCCccEEEEcCCCCEEEEEC--CcEEEEcC-CCeEEEEEee-------------------------------------
Q psy8782 223 QRLLAPVALATAPDGSLFVGDF--NLIRRIMT-DGTVRTVVRL------------------------------------- 262 (482)
Q Consensus 223 ~~l~~P~giavd~~G~lyv~D~--~~I~~i~~-~G~v~~~~g~------------------------------------- 262 (482)
..+..|.||+++.+ .||++|+ ++|.++++ +|+..+.+-.
T Consensus 211 ~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~ 289 (619)
T 3s94_A 211 GSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMS 289 (619)
T ss_dssp -----CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEEC
T ss_pred CCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECC
Confidence 35788999999976 9999999 78999885 3432111000
Q ss_pred ----c--------------------------------------------------cCCCCceeeEEEeCCCCeEEEEeCC
Q psy8782 263 ----N--------------------------------------------------VTRVAYRYHIAYSPLDGTLYISDPE 288 (482)
Q Consensus 263 ----~--------------------------------------------------~~~~~~p~giavd~~~g~lyVaD~~ 288 (482)
+ ...+..|.+|++|+.++.||++|..
T Consensus 290 ~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~ 369 (619)
T 3s94_A 290 PVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDE 369 (619)
T ss_dssp SSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETT
T ss_pred CCCCCceEeCCchheecccCcccCCCCceEEEEEcccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCC
Confidence 0 0124567889999878999999999
Q ss_pred CCEEEEEecCCccCCCCCc-EEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeC-CCcEEEEECCC--EEEEcC
Q psy8782 289 SHQILRVKNAMDFSAPDYN-VEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSA-DNILYFADGTN--IRMVDR 364 (482)
Q Consensus 289 n~~I~~~~~~~~~~~~~g~-~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~-~G~lyvaD~~n--Ir~i~~ 364 (482)
+++|+|++. +|. .++++. ..+..|.|||+|. .++||++|..+ |.+++.
T Consensus 370 ~~~I~r~~~-------~g~~~~~v~~---------------------~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~ 421 (619)
T 3s94_A 370 VRAIRRSFI-------DGSGSQFVVT---------------------AQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRL 421 (619)
T ss_dssp TTEEEEEET-------TSCSCEEEEC---------------------SSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CCeEEEEEc-------CCCccEEEEE---------------------CCCCCcCceEEecccCcEEEEeCCCCcEEEEeC
Confidence 999999994 552 334331 1267899999995 78999999977 999999
Q ss_pred CCcEE-EEEcCCCCCCCCCcCCC-CceEEecccc--ceeEE---------------eecCcceEEeccc--------CCC
Q psy8782 365 DGIVT-TVIGNHMHKSHWKPIPC-EGTLNIEEVS--ETMRD---------------IRHTTGWACYGTG--------DND 417 (482)
Q Consensus 365 ~G~i~-ti~G~~~~~~~~~~~~~-dg~l~v~~~~--~~~~~---------------l~~p~giav~~~g--------~n~ 417 (482)
+|... +++..+...|...++.+ .|.||+++.. .+|.+ +.||.||+++... .++
T Consensus 422 ~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~ 501 (619)
T 3s94_A 422 NGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTD 501 (619)
T ss_dssp TSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred CCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCC
Confidence 98854 44444455555666665 5899987742 23332 5689999999643 667
Q ss_pred ceEEEeeceeeeeeeeeeecccceeeeeeEEcCCCcEEEEeCCCCeeEEee
Q psy8782 418 HMTLIHCYGVMQDVVTSVFNNSHFLDVHFSHQDQDLFYFVKELPQKIRDDL 468 (482)
Q Consensus 418 ~~~~~~~~g~~~~~~~~~~n~~~~~~~~i~~~~~g~~yi~d~~n~rIrk~~ 468 (482)
++..+..+|.....+.. ..+..|.+|++..+ .||++|..+++|+++-
T Consensus 502 ~I~~~~~dG~~~~~~~~---~~l~~P~glav~~~-~ly~tD~~~~~I~~~~ 548 (619)
T 3s94_A 502 KIEVMNTDGTGRRVLVE---DKIPHIFGFTLLGD-YVYWTDWQRRSIERVH 548 (619)
T ss_dssp EEEEEESSSCCCEEEEE---CCCCSSCCEEEETT-EEEEECTTSSCEEEEE
T ss_pred EEEEEecCCCceEEEec---cCCCCcEEEEEECC-EEEEeecCCCeEEEEE
Confidence 88888887765433322 34556788998755 9999999999998863
No 9
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=4.3e-23 Score=214.14 Aligned_cols=275 Identities=13% Similarity=0.097 Sum_probs=188.7
Q ss_pred EEEEeec-ccc--ccccccccccccceecccCCCeEEec--CCceEEEeeCCCeEEEEeccCccCCCCCcCCCCCCcCcc
Q psy8782 43 QTTKLSG-HDM--SISEIGGWNLDIHHRYNFHEGILQKG--DGSNIYLKNKPRIIKTTLGDGHQRPLDCKDCNGEAGPKQ 117 (482)
Q Consensus 43 ~~~~l~g-~~~--~~s~~ggw~l~~~h~~~~~~gil~~g--dG~~~~~~~~~~~i~tv~G~G~~~~~~~~~~~G~~~~~~ 117 (482)
...+|.| .-- ....+...++.....+..|.++.... +|..++++.. ..|..+.-.+..... ...
T Consensus 108 ~VsT~~G~~~~~~g~~g~~dG~~~~~~~~~~P~~lavdp~~~g~Lyv~d~~-~~I~~id~~~~~v~~----------~~~ 176 (430)
T 3tc9_A 108 LVTTFLGTMYDGNTKYDLKDGPFDDCGGFGGAVWLSFDPKNHNHLYLVGEQ-HPTRLIDFEKEYVST----------VYS 176 (430)
T ss_dssp EEEEEECCCBTTTTBCCBCCEEGGGCBCCSCCCEEEEETTEEEEEEEEEBT-EEEEEEETTTTEEEE----------EEC
T ss_pred EEEEeeeeEEccCCCccccCCCHHHccCCCCCCEEEECCCCCCeEEEEeCC-CcEEEEECCCCEEEE----------Eec
Confidence 3456777 311 11222345565555677788887773 3444444333 556655433321100 012
Q ss_pred cCCCceEEEEcCCCc-EEEEeC--C----cEEEEcCCCeEE--EEEeeCCCcccCCCccccccccccCCceEEEecCCCe
Q psy8782 118 RLLAPVALATAPDGS-LFVGDF--N----LIRRIMTDGTVR--TVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSN 188 (482)
Q Consensus 118 ~l~~P~glavd~~G~-lyvaD~--~----~Irki~~~G~v~--ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~ 188 (482)
.+..|.+|++|++|+ |||+|. + ++..++++|.+. ..+. .+..|.+++++++++.
T Consensus 177 ~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~-----------------~~~~p~giavdp~~g~ 239 (430)
T 3tc9_A 177 GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELT-----------------KGQNCNGAETHPINGE 239 (430)
T ss_dssp CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEE-----------------ECSSCCCEEECTTTCC
T ss_pred CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeeeec-----------------cCCCceEEEEeCCCCE
Confidence 567899999999998 999997 2 456677666433 1111 1457999999997779
Q ss_pred EEEEcC-CCeEEEEcCCCccc-cCCCcCCCCCCCceeecCCccEEEEcCCCC-EEEEEC--CcEEEEcCCCe------EE
Q psy8782 189 IYLKNK-PRIIKTTLGDGHQR-PLDCKDCNGEAGPKQRLLAPVALATAPDGS-LFVGDF--NLIRRIMTDGT------VR 257 (482)
Q Consensus 189 lyi~d~-~~~i~~~~g~G~~~-~~~~~~~~g~~~~~~~l~~P~giavd~~G~-lyv~D~--~~I~~i~~~G~------v~ 257 (482)
||++|. ++.|..+...+... ... .......|.+|+++++|+ |||+|. ++|++++.++. +.
T Consensus 240 lyv~d~~~~~V~~~~~~~~~~~~~~---------~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~ 310 (430)
T 3tc9_A 240 LYFNSWNAGQVFRYDFTTQETTPLF---------TIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPY 310 (430)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEE---------ECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCE
T ss_pred EEEEECCCCEEEEEECCCCcEEEEE---------EcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceE
Confidence 999985 45666655443221 100 011224799999999998 999998 89999997753 45
Q ss_pred EEEee-c----------cCCCCcee-eEEEeC-------CCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCccc
Q psy8782 258 TVVRL-N----------VTRVAYRY-HIAYSP-------LDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERC 318 (482)
Q Consensus 258 ~~~g~-~----------~~~~~~p~-giavd~-------~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~ 318 (482)
++++. + ..+|.+|. ++++++ .+|+|||+|..+|||++++ ++|.+++++|.+..+
T Consensus 311 ~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-------~~G~v~~~~g~g~~~ 383 (430)
T 3tc9_A 311 IVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-------PQGRVTTFAGRGSNG 383 (430)
T ss_dssp EEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-------TTSEEEEEEECCTTS
T ss_pred EEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-------CCCcEEEEEeCCCCC
Confidence 66664 1 24688999 899953 1689999999999999998 689999999986532
Q ss_pred CCCCCCccCCCccccccccCCcceEEEeC-CCcEEEEECCC--EEEEcCC
Q psy8782 319 LPGDEAHCGDGAPARDAKLAYPKGVAVSA-DNILYFADGTN--IRMVDRD 365 (482)
Q Consensus 319 ~~g~~~~~gdg~~a~~a~l~~P~giavd~-~G~lyvaD~~n--Ir~i~~~ 365 (482)
..| ..||.++.+++|+.|.|||+|+ +|+|||||..| ||+++++
T Consensus 384 ~~G----~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 384 TSG----YNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp SSS----CBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCc----ccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 211 1266678899999999999999 69999999987 9999865
No 10
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.91 E-value=1.6e-21 Score=211.08 Aligned_cols=320 Identities=19% Similarity=0.184 Sum_probs=216.8
Q ss_pred ccCCCceEEEEcC-CCcEEEEeC--CcEEEEcCCCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEc
Q psy8782 117 QRLLAPVALATAP-DGSLFVGDF--NLIRRIMTDGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKN 193 (482)
Q Consensus 117 ~~l~~P~glavd~-~G~lyvaD~--~~Irki~~~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d 193 (482)
..+..|.|||+|. .++||++|. ++|.+++.+|...+++... .+..|.+|++++.++.||++|
T Consensus 81 ~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~---------------~l~~P~~Iavdp~~g~ly~tD 145 (619)
T 3s94_A 81 SGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQ---------------ELDQPRAIALDPSSGFMYWTD 145 (619)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS---------------SCSCCCCEEEETTTTEEEEEE
T ss_pred CCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeC---------------CCCCCceEEEecCCCeEEEec
Confidence 3567899999998 688999998 8999999999765443221 135799999999999999999
Q ss_pred C--CCeEEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcC-CCCEEEEEC--CcEEEEcCCCeEEEEEeeccCCCC
Q psy8782 194 K--PRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAP-DGSLFVGDF--NLIRRIMTDGTVRTVVRLNVTRVA 268 (482)
Q Consensus 194 ~--~~~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~-~G~lyv~D~--~~I~~i~~~G~v~~~~g~~~~~~~ 268 (482)
. ...|....-+|.....- ....+..|.||++|+ ++.||++|. ++|++++.+|.....+. ...+.
T Consensus 146 ~g~~~~I~r~~~dG~~~~~l---------~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~--~~~~~ 214 (619)
T 3s94_A 146 WGEVPKIERAGMDGSSRFII---------INSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVV--KGSLP 214 (619)
T ss_dssp CSSSCEEEEEETTSCSCEEE---------ECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC----------
T ss_pred cCCCCEEEEEECCCCceEEE---------EeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEE--eCCCC
Confidence 5 35666665555432110 123578999999998 589999999 89999999997665543 23578
Q ss_pred ceeeEEEeCCCCeEEEEeCCCCEEEEEecCCcc---------CCCCCcEEEEe------c-------------------C
Q psy8782 269 YRYHIAYSPLDGTLYISDPESHQILRVKNAMDF---------SAPDYNVEPAV------G-------------------S 314 (482)
Q Consensus 269 ~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~---------~~~~g~~~~va------G-------------------~ 314 (482)
+|.+|+++. +.||++|..+++|.+++..... ..|.+ +.++- + .
T Consensus 215 ~P~gi~~~~--~~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~-i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~ 291 (619)
T 3s94_A 215 HPFALTLFE--DILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMD-IHAFSQQRQPNATNPCGIDNGGCSHLCLMSPV 291 (619)
T ss_dssp -CCCEEESS--SEEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSE-EEECCGGGSCCCCCTTTTTGGGCSSEEEECSS
T ss_pred CceEEEEeC--CEEEEecCCCCEEEEEECCCCcccEEEecCCCCCcE-EEEEccccCCCccccccCCCCcccceEECCCC
Confidence 999999985 4999999999999999964210 00110 11100 0 0
Q ss_pred --Cc--ccCCCCC-----CccCCCcc-------------------------ccccccCCcceEEEeC-CCcEEEEECCC-
Q psy8782 315 --GE--RCLPGDE-----AHCGDGAP-------------------------ARDAKLAYPKGVAVSA-DNILYFADGTN- 358 (482)
Q Consensus 315 --g~--~~~~g~~-----~~~gdg~~-------------------------a~~a~l~~P~giavd~-~G~lyvaD~~n- 358 (482)
+. .|.+|.. ..|.++.. .....|..|.+|++|+ ++.||++|..+
T Consensus 292 ~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~ 371 (619)
T 3s94_A 292 KPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVR 371 (619)
T ss_dssp TTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTT
T ss_pred CCCceEeCCchheecccCcccCCCCceEEEEEcccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCC
Confidence 00 1222211 11111100 0012367899999997 68899999866
Q ss_pred -EEEEcCCC-cEEEEEcCCCCCCCCCcCCC-CceEEeccccc-eeEE---------------eecCcceEEecc-c----
Q psy8782 359 -IRMVDRDG-IVTTVIGNHMHKSHWKPIPC-EGTLNIEEVSE-TMRD---------------IRHTTGWACYGT-G---- 414 (482)
Q Consensus 359 -Ir~i~~~G-~i~ti~G~~~~~~~~~~~~~-dg~l~v~~~~~-~~~~---------------l~~p~giav~~~-g---- 414 (482)
|++++++| ...+++..+...+.+.+++. .+.||+.+... +|.. +..|.+|++++. |
T Consensus 372 ~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~ 451 (619)
T 3s94_A 372 AIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYW 451 (619)
T ss_dssp EEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEE
T ss_pred eEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEE
Confidence 99999988 45677766655666777774 57899876532 3322 455899999975 3
Q ss_pred ----CCCceEEEeeceeeeeeeeeeecccceeeeeeEEcC-CCcEEEEeCCCCeeEEee
Q psy8782 415 ----DNDHMTLIHCYGVMQDVVTSVFNNSHFLDVHFSHQD-QDLFYFVKELPQKIRDDL 468 (482)
Q Consensus 415 ----~n~~~~~~~~~g~~~~~~~~~~n~~~~~~~~i~~~~-~g~~yi~d~~n~rIrk~~ 468 (482)
.+.++.+...+|..... ..+..+..|.+|++|. ++.||++|..++||+++-
T Consensus 452 tD~g~~~~I~r~~~dG~~~~~---l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~ 507 (619)
T 3s94_A 452 TDWGEIPKIERAALDGSDRVV---LVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMN 507 (619)
T ss_dssp EECSSSCEEEEEETTSCSCEE---EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred ecCCCCCEEEEEccCCCccEE---EEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEe
Confidence 34688888777764332 2244577899999994 899999999999998863
No 11
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=99.90 E-value=5.4e-21 Score=207.05 Aligned_cols=337 Identities=19% Similarity=0.265 Sum_probs=231.8
Q ss_pred ccCCCeEEecCCceEEEe-eCCCeEEEEeccCccCCCCCcCCCCCCcCcccCCCceEEEEcC-CCcEEEEeC---CcEEE
Q psy8782 69 NFHEGILQKGDGSNIYLK-NKPRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAP-DGSLFVGDF---NLIRR 143 (482)
Q Consensus 69 ~~~~gil~~gdG~~~~~~-~~~~~i~tv~G~G~~~~~~~~~~~G~~~~~~~l~~P~glavd~-~G~lyvaD~---~~Irk 143 (482)
..+.|+...-.+..+++. .....|..+.-+|..+.. .....|..|.+|++|| +|.||++|. .+|.|
T Consensus 80 ~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~---------l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r 150 (628)
T 4a0p_A 80 DYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV---------LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDR 150 (628)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE---------EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEE
T ss_pred CCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE---------EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEE
Confidence 346777776555544444 445666666544443211 0135688999999997 799999995 79999
Q ss_pred EcCCCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcC-CCeEEEEcCCCccccCCCcCCCCCCCce
Q psy8782 144 IMTDGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNK-PRIIKTTLGDGHQRPLDCKDCNGEAGPK 222 (482)
Q Consensus 144 i~~~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~-~~~i~~~~g~G~~~~~~~~~~~g~~~~~ 222 (482)
++.+|...+.+..+ +..|+|++++.++++||++|. .+.|..+.-+|..... ..
T Consensus 151 ~~~dG~~~~~l~~~----------------~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v----------~~ 204 (628)
T 4a0p_A 151 AAMDGSERTTLVPN----------------VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREV----------IA 204 (628)
T ss_dssp EETTSCSCEEEECS----------------CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE----------EE
T ss_pred EeCCCCceEEEECC----------------CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEE----------ee
Confidence 99998744433221 357999999999999999996 4567766544432211 33
Q ss_pred eecCCccEEEEcCCCCEEEEEC--CcEEEEcC-CCeEEEEEee-------------------------------------
Q psy8782 223 QRLLAPVALATAPDGSLFVGDF--NLIRRIMT-DGTVRTVVRL------------------------------------- 262 (482)
Q Consensus 223 ~~l~~P~giavd~~G~lyv~D~--~~I~~i~~-~G~v~~~~g~------------------------------------- 262 (482)
..+..|.||+++. +.||++|+ ++|.++++ +|+..+++..
T Consensus 205 ~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~ 283 (628)
T 4a0p_A 205 DDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVP 283 (628)
T ss_dssp ECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEET
T ss_pred ccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEEEecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCC
Confidence 5688999999997 89999998 78999984 4532221110
Q ss_pred -c--------------------------------------------------cCCCCceeeEEEeCCCCeEEEEeCCCCE
Q psy8782 263 -N--------------------------------------------------VTRVAYRYHIAYSPLDGTLYISDPESHQ 291 (482)
Q Consensus 263 -~--------------------------------------------------~~~~~~p~giavd~~~g~lyVaD~~n~~ 291 (482)
+ ...+..+.+|++|+.++.||++|..+++
T Consensus 284 ~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~ 363 (628)
T 4a0p_A 284 VGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNM 363 (628)
T ss_dssp TTEEEEECSTTCEECTTSSCEECCSSEEEEEETTEEEEECCCTTCCCCEECCCTTCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred CCCeeEEcCCCcEecccCCcCccccceeeeeccceEEEEecccccCceEEEEehhcCCceEEEEecCCCeEEEEecCcce
Confidence 0 0123456789999988999999999999
Q ss_pred EEEEecCCccCCCCCc--EEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCC-CcEEEEECCC--EEEEcCCC
Q psy8782 292 ILRVKNAMDFSAPDYN--VEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSAD-NILYFADGTN--IRMVDRDG 366 (482)
Q Consensus 292 I~~~~~~~~~~~~~g~--~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~-G~lyvaD~~n--Ir~i~~~G 366 (482)
|+|++. +|. .+++.... .+ ...+..|.|||+|.. ++||++|..+ |.+++.+|
T Consensus 364 I~r~~~-------~g~~~~~v~~~~~------------~~----~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~G 420 (628)
T 4a0p_A 364 IRKAQE-------DGSQGFTVVVSSV------------PS----QNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDG 420 (628)
T ss_dssp EEEEET-------TSCSCEEEEC------------------------CCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEEEEc-------CCCCceEEEEccc------------cc----ccccCCcceEEeeccCCeEEEEcCCCCEEEEEECCC
Confidence 999984 553 23332100 00 123778999999986 7899999977 99999999
Q ss_pred cEEEEE-cCCCCCCCCCcCCC-CceEEeccccc---eeEE---------------eecCcceEEeccc--------CCCc
Q psy8782 367 IVTTVI-GNHMHKSHWKPIPC-EGTLNIEEVSE---TMRD---------------IRHTTGWACYGTG--------DNDH 418 (482)
Q Consensus 367 ~i~ti~-G~~~~~~~~~~~~~-dg~l~v~~~~~---~~~~---------------l~~p~giav~~~g--------~n~~ 418 (482)
....++ -.....|...++.+ .|.||+++... +|.+ +.||.||+++... .+++
T Consensus 421 ~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~ 500 (628)
T 4a0p_A 421 RSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRR 500 (628)
T ss_dssp CEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred CeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCccEEEEeCCCCEEEEEeCCCCE
Confidence 876444 33444455566654 78999876532 3432 5689999999753 5678
Q ss_pred eEEEeeceeeeeeeeeeecccceeeeeeEEcCCCcEEEEeCCCCeeEEee
Q psy8782 419 MTLIHCYGVMQDVVTSVFNNSHFLDVHFSHQDQDLFYFVKELPQKIRDDL 468 (482)
Q Consensus 419 ~~~~~~~g~~~~~~~~~~n~~~~~~~~i~~~~~g~~yi~d~~n~rIrk~~ 468 (482)
+..+..+|.....+.. ..+..|.+|++.. +.||++|..+++|.++-
T Consensus 501 I~~~~~dG~~r~~~~~---~~~~~P~glav~~-~~ly~tD~~~~~i~~~~ 546 (628)
T 4a0p_A 501 IESSDLSGANRIVLED---SNILQPVGLTVFE-NWLYWIDKQQQMIEKID 546 (628)
T ss_dssp EEEEETTSCSCEEEEC---SSCSCEEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCceEEEEc---CCCCCcEEEEEEC-CEEEEEECCCCeEEEEE
Confidence 8888887765443322 3455688899876 89999999999998754
No 12
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.89 E-value=3.6e-21 Score=186.83 Aligned_cols=241 Identities=14% Similarity=0.203 Sum_probs=175.2
Q ss_pred cccCCCceEEEEcCCCcEEEEeC--CcEEEEcCCCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEc
Q psy8782 116 KQRLLAPVALATAPDGSLFVGDF--NLIRRIMTDGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKN 193 (482)
Q Consensus 116 ~~~l~~P~glavd~~G~lyvaD~--~~Irki~~~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d 193 (482)
..+|..|.+|+++++|+|||+|. ++|++++++|.....++.... ....+..|.+++++...+++|+++
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~----------~~~~~~~p~~i~~~~~~g~l~v~~ 95 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGK----------RDSQLLYPNRVAVVRNSGDIIVTE 95 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSS----------STTCBSSEEEEEEETTTTEEEEEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCC----------CcccccCceEEEEEcCCCeEEEEc
Confidence 56899999999999999999997 899999999886655432110 011235689999976667999998
Q ss_pred C--CCeEEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC--CcEEEEcCCCeEEEEEeeccCCCCc
Q psy8782 194 K--PRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF--NLIRRIMTDGTVRTVVRLNVTRVAY 269 (482)
Q Consensus 194 ~--~~~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~--~~I~~i~~~G~v~~~~g~~~~~~~~ 269 (482)
. ++.+..+..+|+....- ....+..|.+|+++++|+|||++. ++|++++++|+....++. ...+..
T Consensus 96 ~~~~~~i~~~d~~g~~~~~~---------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~-~~~~~~ 165 (286)
T 1q7f_A 96 RSPTHQIQIYNQYGQFVRKF---------GATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGC-SKHLEF 165 (286)
T ss_dssp CGGGCEEEEECTTSCEEEEE---------CTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEEC-TTTCSS
T ss_pred CCCCCEEEEECCCCcEEEEe---------cCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCC-CCccCC
Confidence 5 67777777666542100 112356899999999999999997 789999999988777654 245678
Q ss_pred eeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCC
Q psy8782 270 RYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADN 349 (482)
Q Consensus 270 p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G 349 (482)
|.+|++++ +|+|||++..+++|++++ +++......+. + ..+..|.+|++|++|
T Consensus 166 p~~i~~~~-~g~l~v~~~~~~~i~~~~-------~~g~~~~~~~~-------------~------g~~~~p~~i~~d~~G 218 (286)
T 1q7f_A 166 PNGVVVND-KQEIFISDNRAHCVKVFN-------YEGQYLRQIGG-------------E------GITNYPIGVGINSNG 218 (286)
T ss_dssp EEEEEECS-SSEEEEEEGGGTEEEEEE-------TTCCEEEEESC-------------T------TTSCSEEEEEECTTC
T ss_pred cEEEEECC-CCCEEEEECCCCEEEEEc-------CCCCEEEEEcc-------------C------CccCCCcEEEECCCC
Confidence 99999999 899999999999999999 45553332221 1 126789999999999
Q ss_pred cEEEEECC---CEEEEcCCCcEEEEEcCCCCC--CCCCcCCCCceEEeccccceeEEee
Q psy8782 350 ILYFADGT---NIRMVDRDGIVTTVIGNHMHK--SHWKPIPCEGTLNIEEVSETMRDIR 403 (482)
Q Consensus 350 ~lyvaD~~---nIr~i~~~G~i~ti~G~~~~~--~~~~~~~~dg~l~v~~~~~~~~~l~ 403 (482)
+|||++.. .|++++++|.....+..+... +....++++|.||+++..++++.+.
T Consensus 219 ~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs~~~~~v~v~~ 277 (286)
T 1q7f_A 219 EILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYR 277 (286)
T ss_dssp CEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEE
T ss_pred CEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEEECCCCcEEEECCCCeEEEEE
Confidence 99999975 399999998754444332221 2234556677777765544555444
No 13
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.88 E-value=2.5e-20 Score=191.99 Aligned_cols=300 Identities=14% Similarity=0.142 Sum_probs=195.0
Q ss_pred eeEEEEEEEeeEEcccce-eEEEE--EEEEeeccccccccccccccccceecccCCCeEEecCCceEEEeeCCCeEEEEe
Q psy8782 20 GVTTALVKVGYKYRDCRD-IMWDL--QTTKLSGHDMSISEIGGWNLDIHHRYNFHEGILQKGDGSNIYLKNKPRIIKTTL 96 (482)
Q Consensus 20 g~~~a~v~vgy~y~~~~~-~~w~~--~~~~l~g~~~~~s~~ggw~l~~~h~~~~~~gil~~gdG~~~~~~~~~~~i~tv~ 96 (482)
|..+++|.||=.-..+.. ..++. ...+|.|..-... .+.-.+.. ..++.+.++....+|+.+..+.....|..+.
T Consensus 81 g~~~i~v~~~~~~~~~~~~F~y~~~~~v~tv~G~~~~~~-~~dG~~~~-a~~~~P~~la~d~~g~lyv~d~~~~~I~~id 158 (409)
T 3hrp_A 81 GGNRIKVIVDGKEVTTDGTFKYEQAQNVSTISGSASKDG-NDDGDLAS-AKFKYMWGIAAVGNNTVLAYQRDDPRVRLIS 158 (409)
T ss_dssp EEEEEEEEETTEEEECSSCEEECCCEEEEEEEECTTCCS-CCCBSTTT-CCCCCEEEEEECSTTEEEEEETTTTEEEEEE
T ss_pred CcEEEEEEECCeeEEEeeeEEEecccEEEEeecccCCCc-cCCCcHHH-cccCCceEEEEeCCCCEEEEecCCCcEEEEE
Confidence 566777777743212222 22322 3456776532221 11112222 2455566666666666544444455565554
Q ss_pred ccC-ccCCCCCcCCCCCCcCcccCCCceEEEEcCCCc-EEEEeC---CcEEEEcCCCe-EEEEEeeCCCcccCCCccccc
Q psy8782 97 GDG-HQRPLDCKDCNGEAGPKQRLLAPVALATAPDGS-LFVGDF---NLIRRIMTDGT-VRTVVRLKNQKFEKFPKILTS 170 (482)
Q Consensus 97 G~G-~~~~~~~~~~~G~~~~~~~l~~P~glavd~~G~-lyvaD~---~~Irki~~~G~-v~ti~g~g~~~~~~~~~~~~~ 170 (482)
-.+ ....+ ......|. ++++++|+ ||++|. ++|.++++++. .....+.-..
T Consensus 159 ~~~g~~~~~-----------~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~----------- 215 (409)
T 3hrp_A 159 VDDNKVTTV-----------HPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGS----------- 215 (409)
T ss_dssp TTTTEEEEE-----------EETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCT-----------
T ss_pred CCCCEEEEe-----------eccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccc-----------
Confidence 322 11110 11134577 99999986 899997 38999987643 2222221100
Q ss_pred cccccCCceEEEecCCCeEEEEcCCCeEEEEcCC-CccccCCCcCCCCCCCceeecCCcc-EEEEcC-CCCEEEEEC--C
Q psy8782 171 CFLSLSPSGILQKGDGSNIYLKNKPRIIKTTLGD-GHQRPLDCKDCNGEAGPKQRLLAPV-ALATAP-DGSLFVGDF--N 245 (482)
Q Consensus 171 ~~~~~~P~gi~~~~~g~~lyi~d~~~~i~~~~g~-G~~~~~~~~~~~g~~~~~~~l~~P~-giavd~-~G~lyv~D~--~ 245 (482)
.....|.+++++++++.||+++.++.+..+... +....+......+ ..-..|. +|+++| +|.|||+|. +
T Consensus 216 -~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g-----~~~~~P~~~ia~~p~~g~lyv~d~~~~ 289 (409)
T 3hrp_A 216 -TFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSG-----SLGTNPGPYLIYYFVDSNFYMSDQNLS 289 (409)
T ss_dssp -TSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCS-----CCCCSSCCEEEEETTTTEEEEEETTTT
T ss_pred -hhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccC-----CCCCCccccEEEeCCCCEEEEEeCCCC
Confidence 013568999999977899999887766666443 2221110000000 1112377 999999 689999999 8
Q ss_pred cEEEEcCCCeEEEEEeec-----------cCCCCceeeEEEeCCCCeEEEEeC-CCCEEEEEecCCccCCCCCcEEEEec
Q psy8782 246 LIRRIMTDGTVRTVVRLN-----------VTRVAYRYHIAYSPLDGTLYISDP-ESHQILRVKNAMDFSAPDYNVEPAVG 313 (482)
Q Consensus 246 ~I~~i~~~G~v~~~~g~~-----------~~~~~~p~giavd~~~g~lyVaD~-~n~~I~~~~~~~~~~~~~g~~~~vaG 313 (482)
+|++++++|++.+++|.. ..+|.+|.+|++++ +|+|||+|. .+++|++++. ++|.+.+++|
T Consensus 290 ~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~-dG~lyvad~~~~~~I~~~~~------~~G~v~~~~g 362 (409)
T 3hrp_A 290 SVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDE-DGNFYIVDGFKGYCLRKLDI------LDGYVSTVAG 362 (409)
T ss_dssp EEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECT-TCCEEEEETTTTCEEEEEET------TTTEEEEEEE
T ss_pred EEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeC-CCCEEEEeCCCCCEEEEEEC------CCCEEEEEeC
Confidence 999999999998888863 13478999999999 889999999 9999999995 5889999999
Q ss_pred CCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEECCC--EEEEcC
Q psy8782 314 SGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADGTN--IRMVDR 364 (482)
Q Consensus 314 ~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~~n--Ir~i~~ 364 (482)
.+.. ....+| ++..++|+.|.|||+|++|+|||||..| ||+++.
T Consensus 363 ~~~~------~g~~~g-~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 363 QVDV------ASQIDG-TPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp CTTC------BSCCCB-STTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCC------CCcCCC-ChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 7432 112344 6678899999999999999999999987 998864
No 14
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.88 E-value=2e-19 Score=174.23 Aligned_cols=271 Identities=14% Similarity=0.197 Sum_probs=190.1
Q ss_pred cCCCceEEEEcCCCcEEEEeC--CcEEEEcCCCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcC-
Q psy8782 118 RLLAPVALATAPDGSLFVGDF--NLIRRIMTDGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNK- 194 (482)
Q Consensus 118 ~l~~P~glavd~~G~lyvaD~--~~Irki~~~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~- 194 (482)
.+..|.+|++|++|+|||++. ++|.+++++|++..+.- .. ....|.++++++++ ++|+++.
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~-~~--------------~~~~~~~i~~~~~g-~l~v~~~~ 81 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQSGRIKEFEV-PT--------------PDAKVMCLIVSSLG-DIWFTENG 81 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEC-SS--------------TTCCEEEEEECTTS-CEEEEETT
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCCCceEEEEC-CC--------------CCCcceeEEECCCC-CEEEEecC
Confidence 567999999999999999997 89999998887776431 10 02458889888766 6888876
Q ss_pred CCeEEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC--CcEEEEcCCCeEEEEEeeccCCCCceee
Q psy8782 195 PRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF--NLIRRIMTDGTVRTVVRLNVTRVAYRYH 272 (482)
Q Consensus 195 ~~~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~--~~I~~i~~~G~v~~~~g~~~~~~~~p~g 272 (482)
.+.+..+...|+..... .......|.+|+++++|+|||++. +.|.+++++|++..+.. ......|.+
T Consensus 82 ~~~v~~~d~~g~~~~~~---------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~--~~~~~~~~~ 150 (300)
T 2qc5_A 82 ANKIGKLSKKGGFTEYP---------LPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIYEYDL--PNKGSYPAF 150 (300)
T ss_dssp TTEEEEECTTSCEEEEE---------CSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEEEEEC--SSTTCCEEE
T ss_pred CCeEEEECCCCCeEEec---------CCCCCCCCccceECCCCCEEEEccCCCeEEEECCCCCEEEccC--CCCCCCcee
Confidence 56666665555543211 111235799999999999999997 68999999998775531 234568999
Q ss_pred EEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEE
Q psy8782 273 IAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILY 352 (482)
Q Consensus 273 iavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~ly 352 (482)
|++++ +|.|||++..+++|++++ +++....+.. ...+..|.+|++|++|+||
T Consensus 151 i~~d~-~g~l~v~~~~~~~i~~~~-------~~g~~~~~~~--------------------~~~~~~~~~i~~d~~g~l~ 202 (300)
T 2qc5_A 151 ITLGS-DNALWFTENQNNSIGRIT-------NTGKLEEYPL--------------------PTNAAAPVGITSGNDGALW 202 (300)
T ss_dssp EEECT-TSSEEEEETTTTEEEEEC-------TTCCEEEEEC--------------------SSTTCCEEEEEECTTSSEE
T ss_pred EEECC-CCCEEEEecCCCeEEEEC-------CCCcEEEeeC--------------------CCCCCCcceEEECCCCCEE
Confidence 99999 889999999999999998 4666554321 1125689999999999999
Q ss_pred EEECCC--EEEEcCCCcEEEEEcC-CCCCCCCCcCCCCceEEecccc-ceeEEeecCcceEEecccCCCceEEEeeceee
Q psy8782 353 FADGTN--IRMVDRDGIVTTVIGN-HMHKSHWKPIPCEGTLNIEEVS-ETMRDIRHTTGWACYGTGDNDHMTLIHCYGVM 428 (482)
Q Consensus 353 vaD~~n--Ir~i~~~G~i~ti~G~-~~~~~~~~~~~~dg~l~v~~~~-~~~~~l~~p~giav~~~g~n~~~~~~~~~g~~ 428 (482)
|++..+ |.+++++|.+..+... ....+....++.+|.||+.+.. .++.+++. .| ++..+.
T Consensus 203 v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g----------~~~~~~----- 266 (300)
T 2qc5_A 203 FVEIMGNKIGRITTTGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DN----------TIQEYQ----- 266 (300)
T ss_dssp EEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TS----------CEEEEE-----
T ss_pred EEccCCCEEEEEcCCCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CC----------cEEEEE-----
Confidence 999754 9999999988776432 1222223445566777776542 34443331 11 111110
Q ss_pred eeeeeeeecccceeeeeeEEcCCCcEEEEeCCCCeeEEee
Q psy8782 429 QDVVTSVFNNSHFLDVHFSHQDQDLFYFVKELPQKIRDDL 468 (482)
Q Consensus 429 ~~~~~~~~n~~~~~~~~i~~~~~g~~yi~d~~n~rIrk~~ 468 (482)
.......+.+|+++++|.+|+++. + +|.++-
T Consensus 267 -------~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~ 297 (300)
T 2qc5_A 267 -------LQTENAEPHGITFGKDGSVWFALK-C-KIGKLN 297 (300)
T ss_dssp -------CCSTTCCCCCEEECTTSCEEEECS-S-EEEEEE
T ss_pred -------CCccCCccceeEeCCCCCEEEEcc-C-ceEEeC
Confidence 011123466899999999999998 6 888764
No 15
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.87 E-value=1.8e-20 Score=186.81 Aligned_cols=217 Identities=14% Similarity=0.177 Sum_probs=157.2
Q ss_pred ccCCCceEEEEcCCCcEEEEeC--CcEEEEcCCCe---EEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEE
Q psy8782 117 QRLLAPVALATAPDGSLFVGDF--NLIRRIMTDGT---VRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYL 191 (482)
Q Consensus 117 ~~l~~P~glavd~~G~lyvaD~--~~Irki~~~G~---v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi 191 (482)
..|..|.+|++|++|+|||+|. ++|++++++|. +.++...+..+. ....+..|.+++++++++++|+
T Consensus 88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~--------~~~~~~~P~~ia~~~~~g~lyv 159 (329)
T 3fvz_A 88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGS--------DQNHFCQPTDVAVEPSTGAVFV 159 (329)
T ss_dssp TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCC--------STTCCSSEEEEEECTTTCCEEE
T ss_pred CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCC--------CccccCCCcEEEEeCCCCeEEE
Confidence 4678999999999999999998 89999999987 233322221111 1123467999999997779999
Q ss_pred EcC--CCeEEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcCC-CCEEEEEC--CcEEEEcCC-CeEEEEEeeccC
Q psy8782 192 KNK--PRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPD-GSLFVGDF--NLIRRIMTD-GTVRTVVRLNVT 265 (482)
Q Consensus 192 ~d~--~~~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~-G~lyv~D~--~~I~~i~~~-G~v~~~~g~~~~ 265 (482)
+|. ++.|..+..+|...........+..+....|..|.+|+++++ |+|||+|. ++|++++++ |++...+....
T Consensus 160 ~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~- 238 (329)
T 3fvz_A 160 SDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHAS- 238 (329)
T ss_dssp EECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTT-
T ss_pred EeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccc-
Confidence 994 778888887776532211111112223568899999999998 99999999 799999998 98877764321
Q ss_pred CCCcee------eEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCC
Q psy8782 266 RVAYRY------HIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAY 339 (482)
Q Consensus 266 ~~~~p~------giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~ 339 (482)
.-..|. +++++. +|.+||+|..+++|++++. .+|.+....+.. .+.+..
T Consensus 239 ~~~~~~~~~~~pg~~~~~-~g~~~v~~~~~~~v~~~~~------~~g~~~~~~~~~------------------~~~~~~ 293 (329)
T 3fvz_A 239 FGRNVFAISYIPGFLFAV-NGKPYFGDQEPVQGFVMNF------SSGEIIDVFKPV------------------RKHFDM 293 (329)
T ss_dssp TTTCEEEEEEETTEEEEE-ECCCCTTCSCCCCEEEEET------TTCCEEEEECCS------------------SSCCSS
T ss_pred cCCCcceeeecCCEEEEe-CCCEEeccCCCcEEEEEEc------CCCeEEEEEcCC------------------CCccCC
Confidence 112344 455554 6677888888889999985 466665555421 234789
Q ss_pred cceEEEeCCCcEEEEECCC--EEEEcCCCc
Q psy8782 340 PKGVAVSADNILYFADGTN--IRMVDRDGI 367 (482)
Q Consensus 340 P~giavd~~G~lyvaD~~n--Ir~i~~~G~ 367 (482)
|.+|+++++|+|||+|..+ |++++.+|.
T Consensus 294 p~~ia~~~dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 294 PHDIVASEDGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp EEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred eeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence 9999999999999999977 999987653
No 16
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=99.86 E-value=3.7e-19 Score=192.69 Aligned_cols=317 Identities=17% Similarity=0.148 Sum_probs=210.3
Q ss_pred cCCCceEEEEcC-CCcEEEEeC--CcEEEEcCCCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcC
Q psy8782 118 RLLAPVALATAP-DGSLFVGDF--NLIRRIMTDGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNK 194 (482)
Q Consensus 118 ~l~~P~glavd~-~G~lyvaD~--~~Irki~~~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~ 194 (482)
.+..|.|||+|. .++||++|. ++|.+++.+|...+++... -+..|.++++++..+.||++|.
T Consensus 78 g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~---------------~l~~P~~iavdp~~G~lY~tD~ 142 (628)
T 4a0p_A 78 GLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWK---------------DLDSPRALALDPAEGFMYWTEW 142 (628)
T ss_dssp SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECS---------------SCCCEEEEEEETTTTEEEEEEC
T ss_pred CCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeC---------------CCCCcccEEEccCCCeEEEeCC
Confidence 467899999996 588999998 8999999998755433211 1356999999998889999994
Q ss_pred --CCeEEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcCC-CCEEEEEC--CcEEEEcCCCeEEEEEeeccCCCCc
Q psy8782 195 --PRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPD-GSLFVGDF--NLIRRIMTDGTVRTVVRLNVTRVAY 269 (482)
Q Consensus 195 --~~~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~-G~lyv~D~--~~I~~i~~~G~v~~~~g~~~~~~~~ 269 (482)
...|....-+|..... ....+..|.||++|++ +.||++|. ++|.+++.+|...+++. ..+.+
T Consensus 143 g~~~~I~r~~~dG~~~~~----------l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~---~~l~~ 209 (628)
T 4a0p_A 143 GGKPKIDRAAMDGSERTT----------LVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIA---DDLPH 209 (628)
T ss_dssp SSSCEEEEEETTSCSCEE----------EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE---ECCSC
T ss_pred CCCCEEEEEeCCCCceEE----------EECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEee---ccCCC
Confidence 4566665545443211 2235789999999984 79999999 79999999986445442 35789
Q ss_pred eeeEEEeCCCCeEEEEeCCCCEEEEEecCCcc---------CCCCCcEEEEec-------------------------CC
Q psy8782 270 RYHIAYSPLDGTLYISDPESHQILRVKNAMDF---------SAPDYNVEPAVG-------------------------SG 315 (482)
Q Consensus 270 p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~---------~~~~g~~~~vaG-------------------------~g 315 (482)
|.+|+++ ++.||++|..+++|++++..... ..+.+ +.++-- .+
T Consensus 210 P~glav~--~~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~~p~~-i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~ 286 (628)
T 4a0p_A 210 PFGLTQY--QDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMD-ILVFHSSRQSGWNECASSNGHCSHLCLAVPVGG 286 (628)
T ss_dssp EEEEEEE--TTEEEEEETTTTEEEEEETTTCCSCEEEECSCCSCCE-EEEECGGGSCCCCTTTTTGGGCSSEEEEETTTE
T ss_pred ceEEEEE--CCEEEEecCCCCEEEEEECCCCCceEEEecCCCCcce-eeeeeecccccceEeccCCCCcchhhhcCCCCC
Confidence 9999998 57999999999999999953210 00000 000000 00
Q ss_pred c--ccCCCCCC-----ccC-------------------CCcc-----ccccccCCcceEEEeC-CCcEEEEECCC--EEE
Q psy8782 316 E--RCLPGDEA-----HCG-------------------DGAP-----ARDAKLAYPKGVAVSA-DNILYFADGTN--IRM 361 (482)
Q Consensus 316 ~--~~~~g~~~-----~~g-------------------dg~~-----a~~a~l~~P~giavd~-~G~lyvaD~~n--Ir~ 361 (482)
. .|.+|... .|. +... .....+..|.+|++|+ ++.||++|..+ |++
T Consensus 287 ~~C~C~~g~~l~~d~~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r 366 (628)
T 4a0p_A 287 FVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRK 366 (628)
T ss_dssp EEEECSTTCEECTTSSCEECCSSEEEEEETTEEEEECCCTTCCCCEECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred eeEEcCCCcEecccCCcCccccceeeeeccceEEEEecccccCceEEEEehhcCCceEEEEecCCCeEEEEecCcceEEE
Confidence 0 11122110 010 0000 0112356788899997 57899999976 999
Q ss_pred EcCCCc-EEEEEcC------CCCCCCCCcCCCC-ceEEeccccc-eeE---------------EeecCcceEEecc-c--
Q psy8782 362 VDRDGI-VTTVIGN------HMHKSHWKPIPCE-GTLNIEEVSE-TMR---------------DIRHTTGWACYGT-G-- 414 (482)
Q Consensus 362 i~~~G~-i~ti~G~------~~~~~~~~~~~~d-g~l~v~~~~~-~~~---------------~l~~p~giav~~~-g-- 414 (482)
++.+|. ..+++-. +...+.+.+++.. +.||+.+... +|. .+..|.+|++++. |
T Consensus 367 ~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~G~~~~~l~~~~l~~Pr~iavdp~~g~l 446 (628)
T 4a0p_A 367 AQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYM 446 (628)
T ss_dssp EETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCEEEEEEECTTCCEEEEEEETTTTEE
T ss_pred EEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECCCCeEEEEEeCCCCceeeEEEecCCCeE
Confidence 998875 3344432 2233445666665 4788765422 221 1455999999973 3
Q ss_pred ------CCC-ceEEEeeceeeeeeeeeeecccceeeeeeEEcC-CCcEEEEeCCCCeeEEee
Q psy8782 415 ------DND-HMTLIHCYGVMQDVVTSVFNNSHFLDVHFSHQD-QDLFYFVKELPQKIRDDL 468 (482)
Q Consensus 415 ------~n~-~~~~~~~~g~~~~~~~~~~n~~~~~~~~i~~~~-~g~~yi~d~~n~rIrk~~ 468 (482)
.+. +|.+...+|.....+ .+..+..|.+|++|. .+.||++|..+++|+++-
T Consensus 447 y~tD~g~~~~~I~r~~~dG~~~~~l---~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~ 505 (628)
T 4a0p_A 447 YFTNLQERSPKIERAALDGTEREVL---FFSGLSKPIALALDSRLGKLFWADSDLRRIESSD 505 (628)
T ss_dssp EEEEEETTEEEEEEEETTSCSCEEE---ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEeecCCCCCeEEEEeCCCCCcEEE---EeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEe
Confidence 222 788887777654322 234567889999997 589999999999998753
No 17
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.86 E-value=1.9e-18 Score=167.30 Aligned_cols=272 Identities=16% Similarity=0.232 Sum_probs=186.7
Q ss_pred ccCCCceEEEEcCCCcEEEEeC--CcEEEEcCCCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcC
Q psy8782 117 QRLLAPVALATAPDGSLFVGDF--NLIRRIMTDGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNK 194 (482)
Q Consensus 117 ~~l~~P~glavd~~G~lyvaD~--~~Irki~~~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~ 194 (482)
..+..|.+|++|++|+||+++. ++|.++++++.+..+..... ...|.++++++++ ++|+++.
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~~~~~~~~~~~~---------------~~~~~~i~~~~~g-~l~v~~~ 75 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLDGKITEYPLPTP---------------DAKVMCLTISSDG-EVWFTEN 75 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSST---------------TCCEEEEEECTTS-CEEEEET
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCCCCeEEecCCcc---------------cCceeeEEECCCC-CEEEeCC
Confidence 3567899999999999999997 78999998887766542110 1357888888876 6888865
Q ss_pred -CCeEEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC--CcEEEEcCCCeEEEEEeeccCCCCcee
Q psy8782 195 -PRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF--NLIRRIMTDGTVRTVVRLNVTRVAYRY 271 (482)
Q Consensus 195 -~~~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~--~~I~~i~~~G~v~~~~g~~~~~~~~p~ 271 (482)
.+.+..+...+...... .......|.+|+++++|.|||++. +.|.+++++|++..+.. ......|.
T Consensus 76 ~~~~i~~~~~~g~~~~~~---------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~--~~~~~~~~ 144 (299)
T 2z2n_A 76 AANKIGRITKKGIIKEYT---------LPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDDGKIREYEL--PNKGSYPS 144 (299)
T ss_dssp TTTEEEEECTTSCEEEEE---------CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEC--SSTTCCEE
T ss_pred CCCeEEEECCCCcEEEEe---------CCCcCCCceeeEECCCCCEEEEecCCceEEEECCCCCEEEecC--CCCCCCCc
Confidence 56666665544432211 011345799999999999999997 68999999988776542 23456799
Q ss_pred eEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcE
Q psy8782 272 HIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNIL 351 (482)
Q Consensus 272 giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~l 351 (482)
+|++++ +|.||+++..++.|++++ +++.+..+... ..+..|.+|++|++|+|
T Consensus 145 ~i~~~~-~g~l~v~~~~~~~i~~~~-------~~g~~~~~~~~--------------------~~~~~~~~i~~~~~g~l 196 (299)
T 2z2n_A 145 FITLGS-DNALWFTENQNNAIGRIT-------ESGDITEFKIP--------------------TPASGPVGITKGNDDAL 196 (299)
T ss_dssp EEEECT-TSCEEEEETTTTEEEEEC-------TTCCEEEEECS--------------------STTCCEEEEEECTTSSE
T ss_pred eEEEcC-CCCEEEEeCCCCEEEEEc-------CCCcEEEeeCC--------------------CCCCcceeEEECCCCCE
Confidence 999998 899999999999999998 46666554210 12467999999999999
Q ss_pred EEEECCC--EEEEcCCCcEEEEEcC-CCCCCCCCcCCCCceEEeccc-cceeEEeecCcceEEecccCCCceEEEeecee
Q psy8782 352 YFADGTN--IRMVDRDGIVTTVIGN-HMHKSHWKPIPCEGTLNIEEV-SETMRDIRHTTGWACYGTGDNDHMTLIHCYGV 427 (482)
Q Consensus 352 yvaD~~n--Ir~i~~~G~i~ti~G~-~~~~~~~~~~~~dg~l~v~~~-~~~~~~l~~p~giav~~~g~n~~~~~~~~~g~ 427 (482)
||++... |++++++|.+..+... ....+....++.+|.||+.+. ...+..++. .+ ++..+..
T Consensus 197 ~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g----------~~~~~~~--- 262 (299)
T 2z2n_A 197 WFVEIIGNKIGRITTSGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NN----------IIEEYPI--- 262 (299)
T ss_dssp EEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TT----------EEEEEEC---
T ss_pred EEEccCCceEEEECCCCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CC----------ceEEEeC---
Confidence 9999643 9999999988765322 112222344456677777653 234443331 11 1221110
Q ss_pred eeeeeeeeecccceeeeeeEEcCCCcEEEEeCCCCeeEEee
Q psy8782 428 MQDVVTSVFNNSHFLDVHFSHQDQDLFYFVKELPQKIRDDL 468 (482)
Q Consensus 428 ~~~~~~~~~n~~~~~~~~i~~~~~g~~yi~d~~n~rIrk~~ 468 (482)
......+.++++ ++|.+|+++. +++|.++-
T Consensus 263 ---------~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~ 292 (299)
T 2z2n_A 263 ---------QIKSAEPHGICF-DGETIWFAME-CDKIGKLT 292 (299)
T ss_dssp ---------SSSSCCEEEEEE-CSSCEEEEET-TTEEEEEE
T ss_pred ---------CCCCCccceEEe-cCCCEEEEec-CCcEEEEE
Confidence 011224567888 9999999987 56666653
No 18
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.86 E-value=1.1e-18 Score=169.00 Aligned_cols=230 Identities=16% Similarity=0.197 Sum_probs=168.1
Q ss_pred cCCCceEEEEcCCCcEEEEeC--CcEEEEcCCCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcC-
Q psy8782 118 RLLAPVALATAPDGSLFVGDF--NLIRRIMTDGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNK- 194 (482)
Q Consensus 118 ~l~~P~glavd~~G~lyvaD~--~~Irki~~~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~- 194 (482)
.+..|.+|++|++|+|||++. ++|.+++++|++..+..... ...|.++++++++ ++|+++.
T Consensus 60 ~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~g~~~~~~~~~~---------------~~~~~~i~~~~~g-~l~v~~~~ 123 (300)
T 2qc5_A 60 PDAKVMCLIVSSLGDIWFTENGANKIGKLSKKGGFTEYPLPQP---------------DSGPYGITEGLNG-DIWFTQLN 123 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSST---------------TCCEEEEEECSTT-CEEEEETT
T ss_pred CCCcceeEEECCCCCEEEEecCCCeEEEECCCCCeEEecCCCC---------------CCCCccceECCCC-CEEEEccC
Confidence 457899999999999999997 78999999988765432110 1358889988765 7898876
Q ss_pred CCeEEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC--CcEEEEcCCCeEEEEEeeccCCCCceee
Q psy8782 195 PRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF--NLIRRIMTDGTVRTVVRLNVTRVAYRYH 272 (482)
Q Consensus 195 ~~~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~--~~I~~i~~~G~v~~~~g~~~~~~~~p~g 272 (482)
.+.+..+...|+..... .......|.+|+++++|+|||++. +.|++++++|++..+.. ...+..|.+
T Consensus 124 ~~~i~~~~~~g~~~~~~---------~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~--~~~~~~~~~ 192 (300)
T 2qc5_A 124 GDRIGKLTADGTIYEYD---------LPNKGSYPAFITLGSDNALWFTENQNNSIGRITNTGKLEEYPL--PTNAAAPVG 192 (300)
T ss_dssp TTEEEEECTTSCEEEEE---------CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEEC--SSTTCCEEE
T ss_pred CCeEEEECCCCCEEEcc---------CCCCCCCceeEEECCCCCEEEEecCCCeEEEECCCCcEEEeeC--CCCCCCcce
Confidence 55666665555443211 112345799999999999999997 68999999998876432 344678999
Q ss_pred EEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEE
Q psy8782 273 IAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILY 352 (482)
Q Consensus 273 iavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~ly 352 (482)
|++++ +|.|||++..+++|.+++ +++.+..+.. ...+..|.+|++|++|+||
T Consensus 193 i~~d~-~g~l~v~~~~~~~i~~~~-------~~g~~~~~~~--------------------~~~~~~~~~i~~d~~g~l~ 244 (300)
T 2qc5_A 193 ITSGN-DGALWFVEIMGNKIGRIT-------TTGEISEYDI--------------------PTPNARPHAITAGKNSEIW 244 (300)
T ss_dssp EEECT-TSSEEEEETTTTEEEEEC-------TTCCEEEEEC--------------------SSTTCCEEEEEECSTTCEE
T ss_pred EEECC-CCCEEEEccCCCEEEEEc-------CCCcEEEEEC--------------------CCCCCCceEEEECCCCCEE
Confidence 99999 899999999999999998 4666554421 0125679999999999999
Q ss_pred EEECCC--EEEEcCCCcEEEEEcC-CCCCCCCCcCCCCceEEeccccceeEEee
Q psy8782 353 FADGTN--IRMVDRDGIVTTVIGN-HMHKSHWKPIPCEGTLNIEEVSETMRDIR 403 (482)
Q Consensus 353 vaD~~n--Ir~i~~~G~i~ti~G~-~~~~~~~~~~~~dg~l~v~~~~~~~~~l~ 403 (482)
|++..+ |.+++++|.+..+.-. +...+....++.+|.||+.... ++.+++
T Consensus 245 v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~-~i~~~~ 297 (300)
T 2qc5_A 245 FTEWGANQIGRITNDNTIQEYQLQTENAEPHGITFGKDGSVWFALKC-KIGKLN 297 (300)
T ss_dssp EEETTTTEEEEECTTSCEEEEECCSTTCCCCCEEECTTSCEEEECSS-EEEEEE
T ss_pred EeccCCCeEEEECCCCcEEEEECCccCCccceeEeCCCCCEEEEccC-ceEEeC
Confidence 999653 9999999988766322 2223334445667777776643 454443
No 19
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=99.85 E-value=4e-19 Score=176.62 Aligned_cols=201 Identities=21% Similarity=0.281 Sum_probs=150.0
Q ss_pred cCCCceEEEEcC-CCcEEEEeC--CcEEEEcCCC----e-EEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeE
Q psy8782 118 RLLAPVALATAP-DGSLFVGDF--NLIRRIMTDG----T-VRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNI 189 (482)
Q Consensus 118 ~l~~P~glavd~-~G~lyvaD~--~~Irki~~~G----~-v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~l 189 (482)
.+..|.++++|+ ++.||++|. ++|++++++| . ..+++.. .+..|.|++++..+++|
T Consensus 28 ~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~----------------~~~~p~glavd~~~~~l 91 (316)
T 1ijq_A 28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR----------------DIQAPDGLAVDWIHSNI 91 (316)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS----------------SCSCCCEEEEETTTTEE
T ss_pred CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeC----------------CCCCcCEEEEeecCCeE
Confidence 467899999997 578999998 8999999887 2 2333211 13469999999888899
Q ss_pred EEEcC-CCeEEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcC-CCCEEEEEC---CcEEEEcCCCeEEEEEeecc
Q psy8782 190 YLKNK-PRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAP-DGSLFVGDF---NLIRRIMTDGTVRTVVRLNV 264 (482)
Q Consensus 190 yi~d~-~~~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~-~G~lyv~D~---~~I~~i~~~G~v~~~~g~~~ 264 (482)
|++|. .+.|..+.-.|.....- ....+..|.+|++|| +|.||++|. ++|.+++++|+..+.+..
T Consensus 92 y~~d~~~~~I~~~~~~g~~~~~~---------~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~-- 160 (316)
T 1ijq_A 92 YWTDSVLGTVSVADTKGVKRKTL---------FRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT-- 160 (316)
T ss_dssp EEEETTTTEEEEEETTSSSEEEE---------EECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC--
T ss_pred EEEECCCCEEEEEeCCCCceEEE---------EECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEE--
Confidence 99986 56677666555432100 123577999999997 789999998 589999999987766542
Q ss_pred CCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCc-EEEEecCCcccCCCCCCccCCCccccccccCCcceE
Q psy8782 265 TRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYN-VEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGV 343 (482)
Q Consensus 265 ~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~-~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~gi 343 (482)
..+.+|+||++|+.++.||++|..+++|++++. +|. .++++.. ...+.+|.||
T Consensus 161 ~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~-------dg~~~~~~~~~-------------------~~~~~~P~gi 214 (316)
T 1ijq_A 161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV-------NGGNRKTILED-------------------EKRLAHPFSL 214 (316)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEET-------TSCSCEEEEEC-------------------TTTTSSEEEE
T ss_pred CCCCCceEEEEeccCCEEEEEECCCCeEEEEec-------CCCceEEEeec-------------------CCccCCcEEE
Confidence 367899999999878899999999999999994 443 3333321 1237789999
Q ss_pred EEeCCCcEEEEECCC--EEEEcC-CCcEEEEE
Q psy8782 344 AVSADNILYFADGTN--IRMVDR-DGIVTTVI 372 (482)
Q Consensus 344 avd~~G~lyvaD~~n--Ir~i~~-~G~i~ti~ 372 (482)
+++ ++.||++|..+ |+++++ +|...+.+
T Consensus 215 av~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 215 AVF-EDKVFWTDIINEAIFSANRLTGSDVNLL 245 (316)
T ss_dssp EEE-TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred EEE-CCEEEEEECCCCeEEEEeCCCCcceEEE
Confidence 998 58999999877 999987 67643333
No 20
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=99.85 E-value=1.8e-19 Score=184.13 Aligned_cols=200 Identities=24% Similarity=0.310 Sum_probs=152.4
Q ss_pred ccCCCceEEEEcC-CCcEEEEeC--CcEEEEcCCCe-EEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEE
Q psy8782 117 QRLLAPVALATAP-DGSLFVGDF--NLIRRIMTDGT-VRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLK 192 (482)
Q Consensus 117 ~~l~~P~glavd~-~G~lyvaD~--~~Irki~~~G~-v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~ 192 (482)
..+..|.+|++|+ ++.||++|. ++|+|++++|. +.+++..+ +..|.|++++..+++||++
T Consensus 113 ~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~----------------~~~p~glavd~~~g~lY~~ 176 (386)
T 3v65_B 113 NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG----------------LESPGGLAVDWVHDKLYWT 176 (386)
T ss_dssp CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSS----------------CSCCCCEEEETTTTEEEEE
T ss_pred cCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCC----------------CCCccEEEEEeCCCeEEEE
Confidence 4577899999995 788999998 89999999876 44554322 2469999999988999999
Q ss_pred cC-CCeEEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcC-CCCEEEEEC---CcEEEEcCCCeEEEEEeeccCCC
Q psy8782 193 NK-PRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAP-DGSLFVGDF---NLIRRIMTDGTVRTVVRLNVTRV 267 (482)
Q Consensus 193 d~-~~~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~-~G~lyv~D~---~~I~~i~~~G~v~~~~g~~~~~~ 267 (482)
|. .+.|..+.-+|...... ....|..|.+|++|| +|.||++|+ ++|++++++|...+.+. ...+
T Consensus 177 d~~~~~I~~~~~dg~~~~~l---------~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~--~~~~ 245 (386)
T 3v65_B 177 DSGTSRIEVANLDGAHRKVL---------LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIA--DTHL 245 (386)
T ss_dssp ETTTTEEEECBTTSCSCEEE---------ECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE--CSSC
T ss_pred cCCCCeEEEEeCCCCceEEe---------ecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEE--ECCC
Confidence 96 45666655444432110 224578999999997 679999998 58999999997655543 3457
Q ss_pred CceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCc-EEEEecCCcccCCCCCCccCCCccccccccCCcceEEEe
Q psy8782 268 AYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYN-VEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVS 346 (482)
Q Consensus 268 ~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~-~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd 346 (482)
.+|+|||+|+.++.||++|..+++|++++. +|. ..+++. ..+.+|.||+++
T Consensus 246 ~~PnGlavd~~~~~lY~aD~~~~~I~~~d~-------dG~~~~~~~~---------------------~~~~~P~giav~ 297 (386)
T 3v65_B 246 FWPNGLTIDYAGRRMYWVDAKHHVIERANL-------DGSHRKAVIS---------------------QGLPHPFAITVF 297 (386)
T ss_dssp SCEEEEEEEGGGTEEEEEETTTTEEEEECT-------TSCSCEEEEC---------------------SSCSSEEEEEEE
T ss_pred CCeeeEEEeCCCCEEEEEECCCCEEEEEeC-------CCCeeEEEEE---------------------CCCCCceEEEEE
Confidence 899999999878999999999999999994 443 222221 126789999995
Q ss_pred CCCcEEEEECCC--EEEEc-CCCcEEEEE
Q psy8782 347 ADNILYFADGTN--IRMVD-RDGIVTTVI 372 (482)
Q Consensus 347 ~~G~lyvaD~~n--Ir~i~-~~G~i~ti~ 372 (482)
++.||++|..+ |++++ .+|...+.+
T Consensus 298 -~~~ly~td~~~~~V~~~~~~~G~~~~~i 325 (386)
T 3v65_B 298 -EDSLYWTDWHTKSINSANKFTGKNQEII 325 (386)
T ss_dssp -TTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred -CCEEEEeeCCCCeEEEEECCCCcceEEE
Confidence 67999999977 99998 577654444
No 21
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=99.85 E-value=2.1e-19 Score=181.28 Aligned_cols=200 Identities=24% Similarity=0.310 Sum_probs=152.3
Q ss_pred ccCCCceEEEEcC-CCcEEEEeC--CcEEEEcCCCe-EEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEE
Q psy8782 117 QRLLAPVALATAP-DGSLFVGDF--NLIRRIMTDGT-VRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLK 192 (482)
Q Consensus 117 ~~l~~P~glavd~-~G~lyvaD~--~~Irki~~~G~-v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~ 192 (482)
..+..|.+|++|+ ++.||++|. ++|+|++++|. +.+++..+ +..|.|++++..+++||++
T Consensus 70 ~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~----------------~~~p~glavd~~~g~ly~~ 133 (349)
T 3v64_C 70 NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG----------------LESPGGLAVDWVHDKLYWT 133 (349)
T ss_dssp CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS----------------CSCCCEEEEETTTTEEEEE
T ss_pred cCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCC----------------CCCccEEEEecCCCeEEEE
Confidence 3567899999995 788999998 89999999875 34443221 2469999999988999999
Q ss_pred cC-CCeEEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcC-CCCEEEEEC---CcEEEEcCCCeEEEEEeeccCCC
Q psy8782 193 NK-PRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAP-DGSLFVGDF---NLIRRIMTDGTVRTVVRLNVTRV 267 (482)
Q Consensus 193 d~-~~~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~-~G~lyv~D~---~~I~~i~~~G~v~~~~g~~~~~~ 267 (482)
|. .+.|..+.-+|...... ....+..|.+|++|| +|.||++|+ ++|.+++.+|...+.+. ...+
T Consensus 134 d~~~~~I~~~~~dG~~~~~l---------~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~--~~~~ 202 (349)
T 3v64_C 134 DSGTSRIEVANLDGAHRKVL---------LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIA--DTHL 202 (349)
T ss_dssp ETTTTEEEEEETTSCSCEEE---------ECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESC--CSSC
T ss_pred cCCCCeEEEEcCCCCceEEE---------EeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEE--ECCC
Confidence 86 46677666555432110 224577899999998 689999998 57999999997655442 3467
Q ss_pred CceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCc-EEEEecCCcccCCCCCCccCCCccccccccCCcceEEEe
Q psy8782 268 AYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYN-VEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVS 346 (482)
Q Consensus 268 ~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~-~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd 346 (482)
.+|+|||+|+.++.||++|..+++|++++. +|. ..+++. ..+.+|.||+++
T Consensus 203 ~~PnGla~d~~~~~lY~aD~~~~~I~~~~~-------dG~~~~~~~~---------------------~~~~~P~giav~ 254 (349)
T 3v64_C 203 FWPNGLTIDYAGRRMYWVDAKHHVIERANL-------DGSHRKAVIS---------------------QGLPHPFAITVF 254 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEET-------TSCSCEEEEC---------------------SSCSSEEEEEEE
T ss_pred CCcceEEEeCCCCEEEEEECCCCEEEEEeC-------CCCceEEEEe---------------------CCCCCceEEEEE
Confidence 899999999878999999999999999994 443 222221 126789999996
Q ss_pred CCCcEEEEECCC--EEEEc-CCCcEEEEE
Q psy8782 347 ADNILYFADGTN--IRMVD-RDGIVTTVI 372 (482)
Q Consensus 347 ~~G~lyvaD~~n--Ir~i~-~~G~i~ti~ 372 (482)
++.||++|..+ |++++ .+|...+.+
T Consensus 255 -~~~ly~td~~~~~V~~~~~~~G~~~~~i 282 (349)
T 3v64_C 255 -EDSLYWTDWHTKSINSANKFTGKNQEII 282 (349)
T ss_dssp -TTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred -CCEEEEecCCCCeEEEEEccCCCccEEe
Confidence 68999999987 99998 577644444
No 22
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.84 E-value=3.3e-19 Score=170.89 Aligned_cols=233 Identities=17% Similarity=0.308 Sum_probs=159.6
Q ss_pred cCC-CceEEEEcCCCcEEE-EeC--CcEEEEcCCCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEc
Q psy8782 118 RLL-APVALATAPDGSLFV-GDF--NLIRRIMTDGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKN 193 (482)
Q Consensus 118 ~l~-~P~glavd~~G~lyv-aD~--~~Irki~~~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d 193 (482)
.|. .|.+|++|++|+||| ++. ++|+++++++......... -...|.++++++++ ++|+++
T Consensus 21 ~~~~~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~---------------~~~~p~~i~~~~~g-~l~v~~ 84 (270)
T 1rwi_B 21 DFRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFN---------------GLYQPQGLAVDGAG-TVYVTD 84 (270)
T ss_dssp SSCCCEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCC---------------SCCSCCCEEECTTC-CEEEEE
T ss_pred cccCCccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeC---------------CcCCcceeEECCCC-CEEEEc
Confidence 344 999999999999999 876 8999998876543332111 12468999999887 499998
Q ss_pred CCCeEEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC--CcEEEEcCCCeEEEEEeeccCCCCcee
Q psy8782 194 KPRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF--NLIRRIMTDGTVRTVVRLNVTRVAYRY 271 (482)
Q Consensus 194 ~~~~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~--~~I~~i~~~G~v~~~~g~~~~~~~~p~ 271 (482)
..+.+..+...+...... ....+..|.+|+++++|+|||++. ++|++++......... ....+..|.
T Consensus 85 ~~~~i~~~d~~~~~~~~~---------~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~--~~~~~~~p~ 153 (270)
T 1rwi_B 85 FNNRVVTLAAGSNNQTVL---------PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL--PFTGLNDPD 153 (270)
T ss_dssp TTTEEEEECTTCSCCEEC---------CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC--CCCSCCSCC
T ss_pred CCCEEEEEeCCCceEeee---------ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee--ccccCCCce
Confidence 766777776554432100 113456899999999999999997 7899997544322221 133466899
Q ss_pred eEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcE
Q psy8782 272 HIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNIL 351 (482)
Q Consensus 272 giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~l 351 (482)
+|++++ +|.|||++..+++|++++. ++......- ...+..|.+|++|++|+|
T Consensus 154 ~i~~~~-~g~l~v~~~~~~~i~~~~~-------~~~~~~~~~--------------------~~~~~~p~~i~~d~~g~l 205 (270)
T 1rwi_B 154 GVAVDN-SGNVYVTDTDNNRVVKLEA-------ESNNQVVLP--------------------FTDITAPWGIAVDEAGTV 205 (270)
T ss_dssp CEEECT-TCCEEEEEGGGTEEEEECT-------TTCCEEECC--------------------CSSCCSEEEEEECTTCCE
T ss_pred eEEEeC-CCCEEEEECCCCEEEEEec-------CCCceEeec--------------------ccCCCCceEEEECCCCCE
Confidence 999999 8899999999999999984 332221110 112578999999999999
Q ss_pred EEEECCC--EEEEcCCCcEEEEEcCCC-CCCCCCcCCCCceEEecccc-ceeEEeecC
Q psy8782 352 YFADGTN--IRMVDRDGIVTTVIGNHM-HKSHWKPIPCEGTLNIEEVS-ETMRDIRHT 405 (482)
Q Consensus 352 yvaD~~n--Ir~i~~~G~i~ti~G~~~-~~~~~~~~~~dg~l~v~~~~-~~~~~l~~p 405 (482)
||++..+ |+++++++.......... ..+....++.+|.||+.+.. .+|..+..+
T Consensus 206 ~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~ 263 (270)
T 1rwi_B 206 YVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSL 263 (270)
T ss_dssp EEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred EEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCC
Confidence 9999754 999999887544433222 22334556677888887653 466666543
No 23
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=99.84 E-value=5e-19 Score=181.79 Aligned_cols=202 Identities=21% Similarity=0.276 Sum_probs=152.3
Q ss_pred ccCCCceEEEEcC-CCcEEEEeC--CcEEEEcCCCe-----EEEEEeeCCCcccCCCccccccccccCCceEEEecCCCe
Q psy8782 117 QRLLAPVALATAP-DGSLFVGDF--NLIRRIMTDGT-----VRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSN 188 (482)
Q Consensus 117 ~~l~~P~glavd~-~G~lyvaD~--~~Irki~~~G~-----v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~ 188 (482)
..+..|.+|++|+ ++.||++|. ++|++++++|. ..+++..+ +..|.|++++..+++
T Consensus 109 ~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~----------------~~~p~glavD~~~~~ 172 (400)
T 3p5b_L 109 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD----------------IQAPDGLAVDWIHSN 172 (400)
T ss_dssp CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSS----------------CSCEEEEEEETTTTE
T ss_pred cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCC----------------CCCcccEEEEecCCc
Confidence 4578999999997 688999998 89999998872 33444321 346999999998889
Q ss_pred EEEEcC-CCeEEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcC-CCCEEEEEC---CcEEEEcCCCeEEEEEeec
Q psy8782 189 IYLKNK-PRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAP-DGSLFVGDF---NLIRRIMTDGTVRTVVRLN 263 (482)
Q Consensus 189 lyi~d~-~~~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~-~G~lyv~D~---~~I~~i~~~G~v~~~~g~~ 263 (482)
||++|. .+.|..+.-+|.....- ....+..|.+|++|| .|.||++|+ ++|++++.+|...+.+.
T Consensus 173 lY~~d~~~~~I~~~~~~g~~~~~l---------~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~-- 241 (400)
T 3p5b_L 173 IYWTDSVLGTVSVADTKGVKRKTL---------FRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV-- 241 (400)
T ss_dssp EEEEETTTTEEEEECTTTCSEEEE---------EECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEE--
T ss_pred eEEEECCCCeEEEEeCCCCceEEE---------EeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEE--
Confidence 999996 56777766555532110 234678899999998 689999997 68999999997655543
Q ss_pred cCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCc-EEEEecCCcccCCCCCCccCCCccccccccCCcce
Q psy8782 264 VTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYN-VEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKG 342 (482)
Q Consensus 264 ~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~-~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~g 342 (482)
...+.+|+|||+|+.++.||++|..+++|++++. +|. ..+++.. ...|.+|.|
T Consensus 242 ~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~-------dG~~~~~~~~~-------------------~~~l~~P~g 295 (400)
T 3p5b_L 242 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV-------NGGNRKTILED-------------------EKRLAHPFS 295 (400)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET-------TSCCCEEEEEC-------------------SSTTSSEEE
T ss_pred ECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeC-------CCCccEEEEeC-------------------CCCCCCCEE
Confidence 3467899999999878999999999999999994 444 2333210 124789999
Q ss_pred EEEeCCCcEEEEECCC--EEEEc-CCCcEEEEE
Q psy8782 343 VAVSADNILYFADGTN--IRMVD-RDGIVTTVI 372 (482)
Q Consensus 343 iavd~~G~lyvaD~~n--Ir~i~-~~G~i~ti~ 372 (482)
|+++ .+.||++|..+ |++++ .+|.....+
T Consensus 296 l~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i 327 (400)
T 3p5b_L 296 LAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL 327 (400)
T ss_dssp EEEE-TTEEEEEESSSCSEEEEESSSCCCCEEE
T ss_pred EEEe-CCEEEEecCCCCeEEEEEcCCCCceEEE
Confidence 9996 57899999877 99998 577644333
No 24
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.84 E-value=1e-18 Score=168.56 Aligned_cols=199 Identities=22% Similarity=0.282 Sum_probs=148.8
Q ss_pred CCCceEEEEcC-CCcEEEEeC--CcEEEEcCCCeE-EEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcC
Q psy8782 119 LLAPVALATAP-DGSLFVGDF--NLIRRIMTDGTV-RTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNK 194 (482)
Q Consensus 119 l~~P~glavd~-~G~lyvaD~--~~Irki~~~G~v-~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~ 194 (482)
+..|.++++|+ ++.||++|. ++|.+++++|.. .++...+ +..|.+++++++++++|++|.
T Consensus 35 ~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~----------------~~~p~~ia~d~~~~~lyv~d~ 98 (267)
T 1npe_A 35 AKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQD----------------LGSPEGIALDHLGRTIFWTDS 98 (267)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTT----------------CCCEEEEEEETTTTEEEEEET
T ss_pred CCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECC----------------CCCccEEEEEecCCeEEEEEC
Confidence 46789999998 578999998 799999998753 3333211 246999999999899999986
Q ss_pred -CCeEEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcC-CCCEEEEEC----CcEEEEcCCCeEEEEEeeccCCCC
Q psy8782 195 -PRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAP-DGSLFVGDF----NLIRRIMTDGTVRTVVRLNVTRVA 268 (482)
Q Consensus 195 -~~~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~-~G~lyv~D~----~~I~~i~~~G~v~~~~g~~~~~~~ 268 (482)
.+.|..+.-+|.....- ....+..|.+|++|+ +|.||++|. ++|.+++++|...+.+. ...+.
T Consensus 99 ~~~~I~~~~~~g~~~~~~---------~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~--~~~~~ 167 (267)
T 1npe_A 99 QLDRIEVAKMDGTQRRVL---------FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILA--QDNLG 167 (267)
T ss_dssp TTTEEEEEETTSCSCEEE---------ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEE--CTTCS
T ss_pred CCCEEEEEEcCCCCEEEE---------EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEE--ECCCC
Confidence 45666665554321100 112467899999999 589999996 48999999997655443 23567
Q ss_pred ceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcE-EEEecCCcccCCCCCCccCCCccccccccCCcceEEEeC
Q psy8782 269 YRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNV-EPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSA 347 (482)
Q Consensus 269 ~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~-~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~ 347 (482)
.|.+|++++.++.||++|..+++|++++. ++.. ..++ ..+..|.||++|
T Consensus 168 ~P~gia~d~~~~~lyv~d~~~~~I~~~~~-------~g~~~~~~~----------------------~~~~~P~gi~~d- 217 (267)
T 1npe_A 168 LPNGLTFDAFSSQLCWVDAGTHRAECLNP-------AQPGRRKVL----------------------EGLQYPFAVTSY- 217 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEET-------TEEEEEEEE----------------------ECCCSEEEEEEE-
T ss_pred CCcEEEEcCCCCEEEEEECCCCEEEEEec-------CCCceEEEe----------------------cCCCCceEEEEe-
Confidence 89999999966899999999999999994 4432 2221 125679999998
Q ss_pred CCcEEEEECCC--EEEEcCC-CcEEEEEcC
Q psy8782 348 DNILYFADGTN--IRMVDRD-GIVTTVIGN 374 (482)
Q Consensus 348 ~G~lyvaD~~n--Ir~i~~~-G~i~ti~G~ 374 (482)
++.|||+|..+ |++++++ |++...+..
T Consensus 218 ~~~lyva~~~~~~v~~~d~~~g~~~~~i~~ 247 (267)
T 1npe_A 218 GKNLYYTDWKTNSVIAMDLAISKEMDTFHP 247 (267)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEEEECC
T ss_pred CCEEEEEECCCCeEEEEeCCCCCceEEEcc
Confidence 78999999875 9999985 776655543
No 25
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=99.82 E-value=9.3e-19 Score=176.49 Aligned_cols=227 Identities=18% Similarity=0.210 Sum_probs=165.2
Q ss_pred eEEEEcCCCcEEEEeCCcEEEEcCCCeEEE-EEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcC-CCeEEE
Q psy8782 123 VALATAPDGSLFVGDFNLIRRIMTDGTVRT-VVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNK-PRIIKT 200 (482)
Q Consensus 123 ~glavd~~G~lyvaD~~~Irki~~~G~v~t-i~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~-~~~i~~ 200 (482)
...+.++++.|++++.+.|++++++|...+ ++.. +..|.++++++.++.||++|. .+.|..
T Consensus 37 ~C~~~~~~~~ll~~~~~~I~~i~~~g~~~~~~~~~-----------------~~~~~~l~~d~~~~~ly~~D~~~~~I~r 99 (349)
T 3v64_C 37 SCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNN-----------------LENAIALDFHHRRELVFWSDVTLDRILR 99 (349)
T ss_dssp CEEESSSCCEEEEECBSCEEEECTTSCCEEEEECS-----------------CSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred cccccccCceeEeecccceEEEeCCCCeeEEeecC-----------------CCceEEEEEeccccEEEEEeccCCceEE
Confidence 455566778899999999999999885433 3321 346899999998899999995 456666
Q ss_pred EcCCCccccCCCcCCCCCCCceeecCCccEEEEcC-CCCEEEEEC--CcEEEEcCCCeEEEEEeeccCCCCceeeEEEeC
Q psy8782 201 TLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAP-DGSLFVGDF--NLIRRIMTDGTVRTVVRLNVTRVAYRYHIAYSP 277 (482)
Q Consensus 201 ~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~-~G~lyv~D~--~~I~~i~~~G~v~~~~g~~~~~~~~p~giavd~ 277 (482)
+.-.|..... .....+..|.|||+|+ .|+||++|. ++|.+++++|...+.+. ...+..|.+|++||
T Consensus 100 ~~~~g~~~~~---------~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~--~~~l~~P~~iavdp 168 (349)
T 3v64_C 100 ANLNGSNVEE---------VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLL--WQSLEKPRAIALHP 168 (349)
T ss_dssp EETTSCSCEE---------EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE--CTTCSCEEEEEEET
T ss_pred EecCCCCceE---------EEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEE--eCCCCCcceEEEec
Confidence 6544432100 0123567899999997 689999999 79999999997655443 34578999999999
Q ss_pred CCCeEEEEeCCC-CEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeC-CCcEEEEE
Q psy8782 278 LDGTLYISDPES-HQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSA-DNILYFAD 355 (482)
Q Consensus 278 ~~g~lyVaD~~n-~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~-~G~lyvaD 355 (482)
.++.||++|..+ ++|++++ .+|....+.. ...+..|.|||+|+ ++.||++|
T Consensus 169 ~~g~ly~td~~~~~~I~r~~-------~dG~~~~~~~--------------------~~~~~~PnGla~d~~~~~lY~aD 221 (349)
T 3v64_C 169 MEGTIYWTDWGNTPRIEASS-------MDGSGRRIIA--------------------DTHLFWPNGLTIDYAGRRMYWVD 221 (349)
T ss_dssp TTTEEEEEECSSSCEEEEEE-------TTSCSCEESC--------------------CSSCSCEEEEEEETTTTEEEEEE
T ss_pred CcCeEEEeccCCCCEEEEEe-------CCCCCcEEEE--------------------ECCCCCcceEEEeCCCCEEEEEE
Confidence 889999999998 9999999 4554332221 12378899999995 78899999
Q ss_pred CCC--EEEEcCCCcE-EEEEcCCCCCCCCCcCCCCceEEecccc-ceeEEeecC
Q psy8782 356 GTN--IRMVDRDGIV-TTVIGNHMHKSHWKPIPCEGTLNIEEVS-ETMRDIRHT 405 (482)
Q Consensus 356 ~~n--Ir~i~~~G~i-~ti~G~~~~~~~~~~~~~dg~l~v~~~~-~~~~~l~~p 405 (482)
..+ |++++.+|.. .+++..+...|.+.++ .++.||+++.. .+|.+++.+
T Consensus 222 ~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~ 274 (349)
T 3v64_C 222 AKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKF 274 (349)
T ss_dssp TTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETT
T ss_pred CCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEEcc
Confidence 977 9999998863 4455444444444555 45678887763 467766643
No 26
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.82 E-value=1.5e-17 Score=160.99 Aligned_cols=229 Identities=17% Similarity=0.212 Sum_probs=163.9
Q ss_pred CCCceEEEEcCCCcEEEEeC--CcEEEEcCCCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcC-C
Q psy8782 119 LLAPVALATAPDGSLFVGDF--NLIRRIMTDGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNK-P 195 (482)
Q Consensus 119 l~~P~glavd~~G~lyvaD~--~~Irki~~~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~-~ 195 (482)
...|.+|++|++|+||+++. ++|.+++++|.+..+.... ....|.++++++++ ++|+++. .
T Consensus 56 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~---------------~~~~~~~i~~~~~g-~l~v~~~~~ 119 (299)
T 2z2n_A 56 DAKVMCLTISSDGEVWFTENAANKIGRITKKGIIKEYTLPN---------------PDSAPYGITEGPNG-DIWFTEMNG 119 (299)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSS---------------TTCCEEEEEECTTS-CEEEEETTT
T ss_pred cCceeeEEECCCCCEEEeCCCCCeEEEECCCCcEEEEeCCC---------------cCCCceeeEECCCC-CEEEEecCC
Confidence 36799999999999999997 7899999998876654210 02358889888765 7888864 4
Q ss_pred CeEEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC--CcEEEEcCCCeEEEEEeeccCCCCceeeE
Q psy8782 196 RIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF--NLIRRIMTDGTVRTVVRLNVTRVAYRYHI 273 (482)
Q Consensus 196 ~~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~--~~I~~i~~~G~v~~~~g~~~~~~~~p~gi 273 (482)
+.+..+..+++..... .......|.+|+++++|.||+++. +.|.+++++|++..+.. ......|.+|
T Consensus 120 ~~i~~~d~~g~~~~~~---------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~--~~~~~~~~~i 188 (299)
T 2z2n_A 120 NRIGRITDDGKIREYE---------LPNKGSYPSFITLGSDNALWFTENQNNAIGRITESGDITEFKI--PTPASGPVGI 188 (299)
T ss_dssp TEEEEECTTCCEEEEE---------CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEC--SSTTCCEEEE
T ss_pred ceEEEECCCCCEEEec---------CCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcCCCcEEEeeC--CCCCCcceeE
Confidence 5666665455432211 112345799999999999999997 78999999888876532 2345689999
Q ss_pred EEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEE
Q psy8782 274 AYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYF 353 (482)
Q Consensus 274 avd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyv 353 (482)
++++ +|.|||++...++|++++ +++.+..+.. ...+..|.+|++|++|+|||
T Consensus 189 ~~~~-~g~l~v~~~~~~~i~~~~-------~~g~~~~~~~--------------------~~~~~~~~~i~~~~~g~l~v 240 (299)
T 2z2n_A 189 TKGN-DDALWFVEIIGNKIGRIT-------TSGEITEFKI--------------------PTPNARPHAITAGAGIDLWF 240 (299)
T ss_dssp EECT-TSSEEEEETTTTEEEEEC-------TTCCEEEEEC--------------------SSTTCCEEEEEECSTTCEEE
T ss_pred EECC-CCCEEEEccCCceEEEEC-------CCCcEEEEEC--------------------CCCCCCceeEEECCCCCEEE
Confidence 9999 899999999999999998 4566554321 01256799999999999999
Q ss_pred EECCC--EEEEcCCCcEEEEEcC-CCCCCCCCcCCCCceEEeccccceeEEee
Q psy8782 354 ADGTN--IRMVDRDGIVTTVIGN-HMHKSHWKPIPCEGTLNIEEVSETMRDIR 403 (482)
Q Consensus 354 aD~~n--Ir~i~~~G~i~ti~G~-~~~~~~~~~~~~dg~l~v~~~~~~~~~l~ 403 (482)
++..+ |++++++|.+..+.-. +...+....+ .+|.||+......+.+++
T Consensus 241 ~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~~~ 292 (299)
T 2z2n_A 241 TEWGANKIGRLTSNNIIEEYPIQIKSAEPHGICF-DGETIWFAMECDKIGKLT 292 (299)
T ss_dssp EETTTTEEEEEETTTEEEEEECSSSSCCEEEEEE-CSSCEEEEETTTEEEEEE
T ss_pred eccCCceEEEECCCCceEEEeCCCCCCccceEEe-cCCCEEEEecCCcEEEEE
Confidence 99553 9999999987766422 1222223344 567777765444444444
No 27
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=99.82 E-value=6.5e-19 Score=175.38 Aligned_cols=200 Identities=24% Similarity=0.301 Sum_probs=151.7
Q ss_pred ccCCCceEEEEcC-CCcEEEEeC--CcEEEEcCCCeE--EEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEE
Q psy8782 117 QRLLAPVALATAP-DGSLFVGDF--NLIRRIMTDGTV--RTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYL 191 (482)
Q Consensus 117 ~~l~~P~glavd~-~G~lyvaD~--~~Irki~~~G~v--~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi 191 (482)
..+..|.+|++|+ ++.||++|. ++|+|++++|.. .+++..+ +..|.|++++..+++||+
T Consensus 32 ~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~----------------l~~p~glavd~~~g~ly~ 95 (318)
T 3sov_A 32 GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSG----------------LLSPDGLACDWLGEKLYW 95 (318)
T ss_dssp EEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEEC----------------CSCCCEEEEETTTTEEEE
T ss_pred cCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCC----------------CCCccEEEEEcCCCeEEE
Confidence 3466789999997 689999998 899999988752 2333221 346999999998889999
Q ss_pred EcC-CCeEEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcC-CCCEEEEEC---CcEEEEcCCCeEEEEEeeccCC
Q psy8782 192 KNK-PRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAP-DGSLFVGDF---NLIRRIMTDGTVRTVVRLNVTR 266 (482)
Q Consensus 192 ~d~-~~~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~-~G~lyv~D~---~~I~~i~~~G~v~~~~g~~~~~ 266 (482)
+|. .+.|..+.-+|.....- ....+..|.+|++|| .|.||++|. ++|.+++++|+..+.+. ...
T Consensus 96 ~d~~~~~I~~~~~dG~~~~~l---------~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~--~~~ 164 (318)
T 3sov_A 96 TDSETNRIEVSNLDGSLRKVL---------FWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII--NSE 164 (318)
T ss_dssp EETTTTEEEEEETTSCSCEEE---------ECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEE--CSS
T ss_pred EECCCCEEEEEECCCCcEEEE---------EeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEE--ECC
Confidence 986 45676666555432110 124678899999998 589999996 68999999997655543 245
Q ss_pred CCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCc-EEEEecCCcccCCCCCCccCCCccccccccCCcceEEE
Q psy8782 267 VAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYN-VEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAV 345 (482)
Q Consensus 267 ~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~-~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giav 345 (482)
+..|+|||+|+.++.||++|..+++|++++. +|. .++++ ...+..|.||++
T Consensus 165 l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~-------dG~~~~~~~---------------------~~~~~~P~glav 216 (318)
T 3sov_A 165 IYWPNGLTLDYEEQKLYWADAKLNFIHKSNL-------DGTNRQAVV---------------------KGSLPHPFALTL 216 (318)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEET-------TSCSCEEEE---------------------CSCCSCEEEEEE
T ss_pred CCCccEEEEeccCCEEEEEECCCCEEEEEcC-------CCCceEEEe---------------------cCCCCCceEEEE
Confidence 8899999999878999999999999999994 443 22322 113779999999
Q ss_pred eCCCcEEEEECCC--EEEEcC-CCcEEEEE
Q psy8782 346 SADNILYFADGTN--IRMVDR-DGIVTTVI 372 (482)
Q Consensus 346 d~~G~lyvaD~~n--Ir~i~~-~G~i~ti~ 372 (482)
+ .+.||++|..+ |.++++ +|...+.+
T Consensus 217 ~-~~~lywtd~~~~~V~~~~~~~G~~~~~i 245 (318)
T 3sov_A 217 F-EDILYWTDWSTHSILACNKYTGEGLREI 245 (318)
T ss_dssp E-TTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred e-CCEEEEEecCCCeEEEEECCCCCceEEE
Confidence 8 56899999987 999987 67654443
No 28
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.82 E-value=6.1e-18 Score=163.92 Aligned_cols=197 Identities=16% Similarity=0.157 Sum_probs=147.8
Q ss_pred cccCCCceEEEE-cCCCcEEEEeC---CcEEEEcCCCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEE
Q psy8782 116 KQRLLAPVALAT-APDGSLFVGDF---NLIRRIMTDGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYL 191 (482)
Q Consensus 116 ~~~l~~P~glav-d~~G~lyvaD~---~~Irki~~~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi 191 (482)
...+..|.+|++ +++|+|||++. ++|++++++|+....++... ...|.++++++++ ++|+
T Consensus 73 ~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~g~~~~~~~~~~---------------~~~~~~i~~~~~g-~l~v 136 (286)
T 1q7f_A 73 DSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATI---------------LQHPRGVTVDNKG-RIIV 136 (286)
T ss_dssp TTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTSCEEEEECTTT---------------CSCEEEEEECTTS-CEEE
T ss_pred cccccCceEEEEEcCCCeEEEEcCCCCCEEEEECCCCcEEEEecCcc---------------CCCceEEEEeCCC-CEEE
Confidence 346788999999 58999999994 79999999998765443211 2458899999887 6999
Q ss_pred EcC-CCeEEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC--CcEEEEcCCCeEEEEEeeccCCCC
Q psy8782 192 KNK-PRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF--NLIRRIMTDGTVRTVVRLNVTRVA 268 (482)
Q Consensus 192 ~d~-~~~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~--~~I~~i~~~G~v~~~~g~~~~~~~ 268 (482)
++. ++.+..+..+|+..... . ....+..|.+|+++++|+|||++. ++|++++++|+....++. ...+.
T Consensus 137 ~~~~~~~i~~~~~~g~~~~~~----~----~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~-~g~~~ 207 (286)
T 1q7f_A 137 VECKVMRVIIFDQNGNVLHKF----G----CSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGG-EGITN 207 (286)
T ss_dssp EETTTTEEEEECTTSCEEEEE----E----CTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESC-TTTSC
T ss_pred EECCCCEEEEEcCCCCEEEEe----C----CCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEEEEEcc-CCccC
Confidence 875 56677776555432110 0 113456799999999999999997 799999999987666543 23467
Q ss_pred ceeeEEEeCCCCeEEEEeCCCC-EEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeC
Q psy8782 269 YRYHIAYSPLDGTLYISDPESH-QILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSA 347 (482)
Q Consensus 269 ~p~giavd~~~g~lyVaD~~n~-~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~ 347 (482)
.|.+|++++ +|+|||++..++ +|++++ ++|......... .....|.+|++++
T Consensus 208 ~p~~i~~d~-~G~l~v~~~~~~~~i~~~~-------~~g~~~~~~~~~-------------------~~~~~~~~i~~~~ 260 (286)
T 1q7f_A 208 YPIGVGINS-NGEILIADNHNNFNLTIFT-------QDGQLISALESK-------------------VKHAQCFDVALMD 260 (286)
T ss_dssp SEEEEEECT-TCCEEEEECSSSCEEEEEC-------TTSCEEEEEEES-------------------SCCSCEEEEEEET
T ss_pred CCcEEEECC-CCCEEEEeCCCCEEEEEEC-------CCCCEEEEEccc-------------------CCCCcceeEEECC
Confidence 899999999 899999999886 999998 466533322110 1134689999999
Q ss_pred CCcEEEEECCC-EEEEcC
Q psy8782 348 DNILYFADGTN-IRMVDR 364 (482)
Q Consensus 348 ~G~lyvaD~~n-Ir~i~~ 364 (482)
+|+|||++..+ |++++.
T Consensus 261 ~g~l~vs~~~~~v~v~~~ 278 (286)
T 1q7f_A 261 DGSVVLASKDYRLYIYRY 278 (286)
T ss_dssp TTEEEEEETTTEEEEEEC
T ss_pred CCcEEEECCCCeEEEEEc
Confidence 99999998766 777754
No 29
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=99.81 E-value=1.4e-18 Score=177.53 Aligned_cols=228 Identities=18% Similarity=0.213 Sum_probs=163.5
Q ss_pred eEEEEcCCCcEEEEeCCcEEEEcCCCe-EEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcC-CCeEEE
Q psy8782 123 VALATAPDGSLFVGDFNLIRRIMTDGT-VRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNK-PRIIKT 200 (482)
Q Consensus 123 ~glavd~~G~lyvaD~~~Irki~~~G~-v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~-~~~i~~ 200 (482)
...+.++++.|++++.+.|+++++++. ++.++.. +..|.|+++++.++.||++|. .+.|..
T Consensus 80 ~C~~~~~~~~l~~~~~~~I~~i~~~~~~~~~~~~~-----------------~~~~~gl~~d~~~~~ly~~D~~~~~I~r 142 (386)
T 3v65_B 80 SCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNN-----------------LENAIALDFHHRRELVFWSDVTLDRILR 142 (386)
T ss_dssp CEEECSSCCEEEEECBSCEEEECTTSCCCEEEECS-----------------CSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred eECCccccceeEeecCccceeeccCCCcEEEEecC-----------------CCccEEEEEecCCCeEEEEeCCCCcEEE
Confidence 345566778899999999999999865 3333321 346899999998889999986 456666
Q ss_pred EcCCCccccCCCcCCCCCCCceeecCCccEEEEcC-CCCEEEEEC--CcEEEEcCCCeEEEEEeeccCCCCceeeEEEeC
Q psy8782 201 TLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAP-DGSLFVGDF--NLIRRIMTDGTVRTVVRLNVTRVAYRYHIAYSP 277 (482)
Q Consensus 201 ~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~-~G~lyv~D~--~~I~~i~~~G~v~~~~g~~~~~~~~p~giavd~ 277 (482)
+.-.|..... .....+..|.||++|+ .|+||++|. ++|.+++++|...+.+. ...+..|.+|+++|
T Consensus 143 ~~~~g~~~~~---------~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~--~~~l~~P~giavdp 211 (386)
T 3v65_B 143 ANLNGSNVEE---------VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLL--WQSLEKPRAIALHP 211 (386)
T ss_dssp EETTSCCEEE---------EECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEE--CSSCSCEEEEEEET
T ss_pred EecCCCCcEE---------EEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEee--cCCCCCCcEEEEEc
Confidence 6544432100 0123567899999996 689999999 79999999997654443 34678999999999
Q ss_pred CCCeEEEEeCCC-CEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeC-CCcEEEEE
Q psy8782 278 LDGTLYISDPES-HQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSA-DNILYFAD 355 (482)
Q Consensus 278 ~~g~lyVaD~~n-~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~-~G~lyvaD 355 (482)
.++.||++|..+ ++|++++ .+|....+.. ...+..|.|||+|+ ++.||++|
T Consensus 212 ~~g~ly~td~~~~~~I~r~~-------~dG~~~~~~~--------------------~~~~~~PnGlavd~~~~~lY~aD 264 (386)
T 3v65_B 212 MEGTIYWTDWGNTPRIEASS-------MDGSGRRIIA--------------------DTHLFWPNGLTIDYAGRRMYWVD 264 (386)
T ss_dssp TTTEEEEEECSSSCEEEEEE-------TTSCSCEEEE--------------------CSSCSCEEEEEEEGGGTEEEEEE
T ss_pred CCCeEEEeccCCCCEEEEEe-------CCCCCcEEEE--------------------ECCCCCeeeEEEeCCCCEEEEEE
Confidence 789999999998 9999999 4654332221 11277899999995 78899999
Q ss_pred CCC--EEEEcCCCcE-EEEEcCCCCCCCCCcCCCCceEEeccc-cceeEEeecCc
Q psy8782 356 GTN--IRMVDRDGIV-TTVIGNHMHKSHWKPIPCEGTLNIEEV-SETMRDIRHTT 406 (482)
Q Consensus 356 ~~n--Ir~i~~~G~i-~ti~G~~~~~~~~~~~~~dg~l~v~~~-~~~~~~l~~p~ 406 (482)
+.+ |++++.+|.. .+++..+...|.+..+ .++.||+++. ..+|.+++.++
T Consensus 265 ~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~ 318 (386)
T 3v65_B 265 AKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFT 318 (386)
T ss_dssp TTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTT
T ss_pred CCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCC
Confidence 977 9999998763 4455444444444444 3457777665 34666665443
No 30
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=99.81 E-value=1.9e-18 Score=190.99 Aligned_cols=202 Identities=22% Similarity=0.284 Sum_probs=152.8
Q ss_pred ccCCCceEEEEcC-CCcEEEEeC--CcEEEEcCCCe-----EEEEEeeCCCcccCCCccccccccccCCceEEEecCCCe
Q psy8782 117 QRLLAPVALATAP-DGSLFVGDF--NLIRRIMTDGT-----VRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSN 188 (482)
Q Consensus 117 ~~l~~P~glavd~-~G~lyvaD~--~~Irki~~~G~-----v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~ 188 (482)
..+..|.+|++|+ ++.||++|. ++|++++.+|. ..+++..+ +..|.||+++..+++
T Consensus 421 ~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~----------------l~~P~GLAvD~~~~~ 484 (791)
T 3m0c_C 421 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD----------------IQAPDGLAVDWIHSN 484 (791)
T ss_dssp CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSS----------------CSCCCEEEEETTTTE
T ss_pred cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecC----------------CCCcceeeeeecCCc
Confidence 4578899999998 688999998 79999998863 33444321 357999999999999
Q ss_pred EEEEcC-CCeEEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcCC-CCEEEEEC---CcEEEEcCCCeEEEEEeec
Q psy8782 189 IYLKNK-PRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPD-GSLFVGDF---NLIRRIMTDGTVRTVVRLN 263 (482)
Q Consensus 189 lyi~d~-~~~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~-G~lyv~D~---~~I~~i~~~G~v~~~~g~~ 263 (482)
||++|. .+.|..+.-+|.....- ....|..|.+||+|+. |.||++|+ ++|.+++.+|...+++.
T Consensus 485 LY~tD~~~~~I~v~~ldG~~~~~l---------~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv-- 553 (791)
T 3m0c_C 485 IYWTDSVLGTVSVADTKGVKRKTL---------FRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV-- 553 (791)
T ss_dssp EEEEETTTTEEEEEETTSSSEEEE---------EECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE--
T ss_pred EEEEecCCCeEEEEeCCCCeEEEE---------EeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEE--
Confidence 999996 56777766565542210 2346778999999985 89999997 58999999998666554
Q ss_pred cCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCc-EEEEecCCcccCCCCCCccCCCccccccccCCcce
Q psy8782 264 VTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYN-VEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKG 342 (482)
Q Consensus 264 ~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~-~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~g 342 (482)
...+.+|+|||+|+.++.||++|..+++|++++. +|. ..+++.. ..+|.+|.+
T Consensus 554 ~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~-------dG~~~~~v~~~-------------------~~~l~~P~g 607 (791)
T 3m0c_C 554 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV-------NGGNRKTILED-------------------EKRLAHPFS 607 (791)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET-------TSCSCEEEEEC-------------------TTTTSSEEE
T ss_pred eCCCCCceEEEEecCCCeEEEEeCCCCcEEEEec-------CCCceEEEecC-------------------CCccCCCCE
Confidence 3567899999999878999999999999999994 554 2222210 124789999
Q ss_pred EEEeCCCcEEEEECCC--EEEEcC-CCc-EEEEE
Q psy8782 343 VAVSADNILYFADGTN--IRMVDR-DGI-VTTVI 372 (482)
Q Consensus 343 iavd~~G~lyvaD~~n--Ir~i~~-~G~-i~ti~ 372 (482)
|+++ .+.||++|..+ |++++. +|. +.+++
T Consensus 608 lav~-~~~lYwtD~~~~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 608 LAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp EEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EEEe-CCEEEEEECCCCEEEEEeCCCCcceEEee
Confidence 9997 56999999987 888974 675 44443
No 31
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=99.81 E-value=6e-18 Score=168.08 Aligned_cols=180 Identities=18% Similarity=0.218 Sum_probs=134.1
Q ss_pred EEEEeCCcEEEEcCCCe-EEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcC-CCeEEEEcCCC----c
Q psy8782 133 LFVGDFNLIRRIMTDGT-VRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNK-PRIIKTTLGDG----H 206 (482)
Q Consensus 133 lyvaD~~~Irki~~~G~-v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~-~~~i~~~~g~G----~ 206 (482)
|+++..+.|++++.++. ++.++.. +..|.|++++..++.||++|. .+.|..+.-.+ .
T Consensus 4 ll~~~~~~I~~i~~~~~~~~~~~~~-----------------~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~ 66 (316)
T 1ijq_A 4 LFFTNRHEVRKMTLDRSEYTSLIPN-----------------LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS 66 (316)
T ss_dssp EEEECBSSEEEEETTSCCCEEEECS-----------------CSSEEEEEEETTTTEEEEEETTTTEEEEEEC-------
T ss_pred EEEECCCeEEEEECCCcceEehhcC-----------------CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCc
Confidence 78888899999998754 4444321 346899999999899999996 45666654433 1
Q ss_pred cccCCCcCCCCCCCceeecCCccEEEEcC-CCCEEEEEC--CcEEEEcCCCeEEEEEeeccCCCCceeeEEEeCCCCeEE
Q psy8782 207 QRPLDCKDCNGEAGPKQRLLAPVALATAP-DGSLFVGDF--NLIRRIMTDGTVRTVVRLNVTRVAYRYHIAYSPLDGTLY 283 (482)
Q Consensus 207 ~~~~~~~~~~g~~~~~~~l~~P~giavd~-~G~lyv~D~--~~I~~i~~~G~v~~~~g~~~~~~~~p~giavd~~~g~ly 283 (482)
.... .....+..|.+||+|+ .++||++|. ++|.+++++|+..+.+.. ..+..|.+|++||.++.||
T Consensus 67 ~~~~---------~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~--~~~~~P~~iavdp~~g~ly 135 (316)
T 1ijq_A 67 SYDT---------VISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR--ENGSKPRAIVVDPVHGFMY 135 (316)
T ss_dssp -CEE---------EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE--CTTCCEEEEEEETTTTEEE
T ss_pred ccEE---------EEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEE--CCCCCcceEEeCCCCCEEE
Confidence 1000 0123567899999996 679999998 799999999975544332 3567899999999789999
Q ss_pred EEeCCC-CEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeC-CCcEEEEECCC--E
Q psy8782 284 ISDPES-HQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSA-DNILYFADGTN--I 359 (482)
Q Consensus 284 VaD~~n-~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~-~G~lyvaD~~n--I 359 (482)
++|..+ ++|++++ .+|....+... ..+..|.|||+|+ ++.||++|..+ |
T Consensus 136 ~~d~~~~~~I~~~~-------~dG~~~~~~~~--------------------~~~~~P~gla~d~~~~~lY~~D~~~~~I 188 (316)
T 1ijq_A 136 WTDWGTPAKIKKGG-------LNGVDIYSLVT--------------------ENIQWPNGITLDLLSGRLYWVDSKLHSI 188 (316)
T ss_dssp EEECSSSCEEEEEE-------TTSCCEEEEEC--------------------SSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred EEccCCCCeEEEEc-------CCCCCeEEEEE--------------------CCCCCceEEEEeccCCEEEEEECCCCeE
Confidence 999986 8999999 56664443321 1377899999996 57899999976 9
Q ss_pred EEEcCCCc
Q psy8782 360 RMVDRDGI 367 (482)
Q Consensus 360 r~i~~~G~ 367 (482)
.+++.+|.
T Consensus 189 ~~~d~dg~ 196 (316)
T 1ijq_A 189 SSIDVNGG 196 (316)
T ss_dssp EEEETTSC
T ss_pred EEEecCCC
Confidence 99998875
No 32
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.80 E-value=8.9e-18 Score=166.58 Aligned_cols=252 Identities=12% Similarity=0.041 Sum_probs=161.1
Q ss_pred cccCCCceEEEEcCCCcEEEEeC--CcEEEEcCCC-eEEEEEeeCCCcc--cCCCcc-ccccccccCCceEEEecCCCeE
Q psy8782 116 KQRLLAPVALATAPDGSLFVGDF--NLIRRIMTDG-TVRTVVRLKNQKF--EKFPKI-LTSCFLSLSPSGILQKGDGSNI 189 (482)
Q Consensus 116 ~~~l~~P~glavd~~G~lyvaD~--~~Irki~~~G-~v~ti~g~g~~~~--~~~~~~-~~~~~~~~~P~gi~~~~~g~~l 189 (482)
..+|..|.++++|++|++|++|. ++|.++++++ .++.+.......- ..++.. .........|.|++++++.++|
T Consensus 15 ~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l 94 (322)
T 2fp8_A 15 EAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQL 94 (322)
T ss_dssp ECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEE
T ss_pred CCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcE
Confidence 45688999999999999444554 8999999875 5666553211000 000000 0011224569999999855699
Q ss_pred EEEcCCCeEEEEcCC-CccccCCCcCCCCCCCceeecCCccEEEEcC-CCCEEEEEC-------------------CcEE
Q psy8782 190 YLKNKPRIIKTTLGD-GHQRPLDCKDCNGEAGPKQRLLAPVALATAP-DGSLFVGDF-------------------NLIR 248 (482)
Q Consensus 190 yi~d~~~~i~~~~g~-G~~~~~~~~~~~g~~~~~~~l~~P~giavd~-~G~lyv~D~-------------------~~I~ 248 (482)
||+|..+.+..+... +....+.. ......+..|.+|++|+ +|+|||+|. ++|.
T Consensus 95 ~v~d~~~~i~~~d~~~g~~~~~~~------~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~ 168 (322)
T 2fp8_A 95 YIVDCYYHLSVVGSEGGHATQLAT------SVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLI 168 (322)
T ss_dssp EEEETTTEEEEECTTCEECEEEES------EETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEE
T ss_pred EEEECCCCEEEEeCCCCEEEEecc------cCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEE
Confidence 999876555555443 32211100 00124577899999999 999999996 3589
Q ss_pred EEcCC-CeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccC
Q psy8782 249 RIMTD-GTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCG 327 (482)
Q Consensus 249 ~i~~~-G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~g 327 (482)
+++++ +++..+.. .+..|++|++++++..|||+|+.+++|++++..+. ..+..+.++
T Consensus 169 ~~d~~~~~~~~~~~----~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~---~~~~~~~~~--------------- 226 (322)
T 2fp8_A 169 KYDPSTKETTLLLK----ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGP---KKGTAEVLV--------------- 226 (322)
T ss_dssp EEETTTTEEEEEEE----EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSST---TTTCEEEEE---------------
T ss_pred EEeCCCCEEEEecc----CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCC---cCCccceEE---------------
Confidence 99986 56555432 36789999999933469999999999999995321 012222222
Q ss_pred CCccccccccCCcceEEEeCCCcEEEEECC----------C--EEEEcCCCcEEEEEcCCCCCC-CC--CcCCCCceEEe
Q psy8782 328 DGAPARDAKLAYPKGVAVSADNILYFADGT----------N--IRMVDRDGIVTTVIGNHMHKS-HW--KPIPCEGTLNI 392 (482)
Q Consensus 328 dg~~a~~a~l~~P~giavd~~G~lyvaD~~----------n--Ir~i~~~G~i~ti~G~~~~~~-~~--~~~~~dg~l~v 392 (482)
.+..|.||++|++|+|||++.. + |.+++++|++...+....... .. .....++.||+
T Consensus 227 --------~~~gP~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v 298 (322)
T 2fp8_A 227 --------KIPNPGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYI 298 (322)
T ss_dssp --------ECSSEEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEEETTEEEE
T ss_pred --------eCCCCCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEEeCCEEEE
Confidence 0112999999999999999965 2 899999999877665442110 00 01113567777
Q ss_pred ccc-cceeEEee
Q psy8782 393 EEV-SETMRDIR 403 (482)
Q Consensus 393 ~~~-~~~~~~l~ 403 (482)
.+. ..++.++.
T Consensus 299 ~~~~~~~i~~~~ 310 (322)
T 2fp8_A 299 GTLFHGSVGILV 310 (322)
T ss_dssp ECSSCSEEEEEE
T ss_pred eecCCCceEEEe
Confidence 654 33455444
No 33
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=99.80 E-value=8.8e-18 Score=172.48 Aligned_cols=192 Identities=13% Similarity=0.155 Sum_probs=132.4
Q ss_pred ecCCccEEEEcC-CCCEEEEEC--CcEEEEcCCCe-----EEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEE
Q psy8782 224 RLLAPVALATAP-DGSLFVGDF--NLIRRIMTDGT-----VRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRV 295 (482)
Q Consensus 224 ~l~~P~giavd~-~G~lyv~D~--~~I~~i~~~G~-----v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~ 295 (482)
.+..|.+|++|+ ++.||++|. ++|++++++|. ..+++ ...+..|.|||+|+.+++||++|..+++|.++
T Consensus 110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~---~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~ 186 (400)
T 3p5b_L 110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI---SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA 186 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEE---CSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEE---eCCCCCcccEEEEecCCceEEEECCCCeEEEE
Confidence 356789999997 679999999 79999998873 33443 34577899999998789999999999999999
Q ss_pred ecCCccCCCCCcE-EEEecCCcccCCCCCCccCCCccccccccCCcceEEEeC-CCcEEEEECCC---EEEEcCCCcEEE
Q psy8782 296 KNAMDFSAPDYNV-EPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSA-DNILYFADGTN---IRMVDRDGIVTT 370 (482)
Q Consensus 296 ~~~~~~~~~~g~~-~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~-~G~lyvaD~~n---Ir~i~~~G~i~t 370 (482)
+ ++|.. .+++. ..|..|.+||+|+ .|.||++|.+. |++++.+|...+
T Consensus 187 ~-------~~g~~~~~l~~---------------------~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~ 238 (400)
T 3p5b_L 187 D-------TKGVKRKTLFR---------------------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY 238 (400)
T ss_dssp C-------TTTCSEEEEEE---------------------CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCE
T ss_pred e-------CCCCceEEEEe---------------------CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccE
Confidence 8 45553 33321 2377899999997 68999999753 999999987544
Q ss_pred EE-cCCCCCCCCCcCCC-CceEEecccc-ceeEEeecCcceEEecccCCCceEEEeeceeeeeeeeeeecccceeeeeeE
Q psy8782 371 VI-GNHMHKSHWKPIPC-EGTLNIEEVS-ETMRDIRHTTGWACYGTGDNDHMTLIHCYGVMQDVVTSVFNNSHFLDVHFS 447 (482)
Q Consensus 371 i~-G~~~~~~~~~~~~~-dg~l~v~~~~-~~~~~l~~p~giav~~~g~n~~~~~~~~~g~~~~~~~~~~n~~~~~~~~i~ 447 (482)
.+ ..+...|++.+++. .+.||+.+.. .+|.+++ .+|.....+. .....+..|.+++
T Consensus 239 ~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d--------------------~dG~~~~~~~-~~~~~l~~P~gl~ 297 (400)
T 3p5b_L 239 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSID--------------------VNGGNRKTIL-EDEKRLAHPFSLA 297 (400)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE--------------------TTSCCCEEEE-ECSSTTSSEEEEE
T ss_pred EEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEe--------------------CCCCccEEEE-eCCCCCCCCEEEE
Confidence 33 33334444555553 3466665543 2444443 3332221111 1123455677888
Q ss_pred EcCCCcEEEEeCCCCeeEEee
Q psy8782 448 HQDQDLFYFVKELPQKIRDDL 468 (482)
Q Consensus 448 ~~~~g~~yi~d~~n~rIrk~~ 468 (482)
+ .++.+|++|..+++|+++-
T Consensus 298 v-~~~~lywtd~~~~~V~~~~ 317 (400)
T 3p5b_L 298 V-FEDKVFWTDIINEAIFSAN 317 (400)
T ss_dssp E-ETTEEEEEESSSCSEEEEE
T ss_pred E-eCCEEEEecCCCCeEEEEE
Confidence 8 5679999999999999864
No 34
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=99.79 E-value=6.5e-18 Score=166.65 Aligned_cols=200 Identities=18% Similarity=0.187 Sum_probs=143.6
Q ss_pred CCceEEEEcCCCcEEEEeC--CcEEEEcCCCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcC--C
Q psy8782 120 LAPVALATAPDGSLFVGDF--NLIRRIMTDGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNK--P 195 (482)
Q Consensus 120 ~~P~glavd~~G~lyvaD~--~~Irki~~~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~--~ 195 (482)
..|.+++++++|+|||+|. ++|++++++|.+.+++..+ ..|.++++++++ ++|+++. +
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~-----------------~~p~gia~~~dG-~l~vad~~~~ 93 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVE-----------------GKVSGLAFTSNG-DLVATGWNAD 93 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECS-----------------SEEEEEEECTTS-CEEEEEECTT
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCceEEEEeCC-----------------CCceeEEEcCCC-cEEEEeccCC
Confidence 6899999999999999996 8999999999887766432 248999999887 4999984 2
Q ss_pred C--eEEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC--CcEEEEcCCC---eEEEEEe-----ec
Q psy8782 196 R--IIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF--NLIRRIMTDG---TVRTVVR-----LN 263 (482)
Q Consensus 196 ~--~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~--~~I~~i~~~G---~v~~~~g-----~~ 263 (482)
+ ++.....+|+..... .......|.++++.+++.+|++|. ++|+++++++ ++....+ ..
T Consensus 94 ~~~v~~~d~~~g~~~~~~---------~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~ 164 (306)
T 2p4o_A 94 SIPVVSLVKSDGTVETLL---------TLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNS 164 (306)
T ss_dssp SCEEEEEECTTSCEEEEE---------ECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSST
T ss_pred cceEEEEcCCCCeEEEEE---------eCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccc
Confidence 3 333344566543211 001234688999888889999996 7999999874 2322211 11
Q ss_pred cCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceE
Q psy8782 264 VTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGV 343 (482)
Q Consensus 264 ~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~gi 343 (482)
...+..|++| +++++.|||+|+.+++|++++... +|.+ +. ...-+.+..|.||
T Consensus 165 ~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~-----~g~~----~~----------------~~~~~~~~~P~gi 217 (306)
T 2p4o_A 165 ESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDS-----TDKP----GE----------------PEIFVEQTNIDDF 217 (306)
T ss_dssp TCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCT-----TSCB----CC----------------CEEEEESCCCSSE
T ss_pred cCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCC-----CCCC----Cc----------------cEEEeccCCCCCe
Confidence 2456789998 664669999999999999999521 1211 00 0111235689999
Q ss_pred EEeCCCcEEEEECCC--EEEEcCCCcEEEEEc
Q psy8782 344 AVSADNILYFADGTN--IRMVDRDGIVTTVIG 373 (482)
Q Consensus 344 avd~~G~lyvaD~~n--Ir~i~~~G~i~ti~G 373 (482)
++|++|+|||++..+ |++++++|++..+..
T Consensus 218 ~vd~dG~l~va~~~~~~V~~~~~~G~~~~~~~ 249 (306)
T 2p4o_A 218 AFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQ 249 (306)
T ss_dssp EEBTTCCEEEECBTTCCEEEECTTCCEEEEEC
T ss_pred EECCCCCEEEEeCCCCeEEEECCCCCEEEEee
Confidence 999999999999765 999999999876643
No 35
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.79 E-value=9.9e-18 Score=160.50 Aligned_cols=192 Identities=22% Similarity=0.370 Sum_probs=140.7
Q ss_pred cCCCceEEEEcCCCcEEEEeC-CcEEEEcCCCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcC-C
Q psy8782 118 RLLAPVALATAPDGSLFVGDF-NLIRRIMTDGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNK-P 195 (482)
Q Consensus 118 ~l~~P~glavd~~G~lyvaD~-~~Irki~~~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~-~ 195 (482)
.+..|.+|+++++|+|||++. ++|+++++++......... -...|.++++++++ ++|+++. .
T Consensus 65 ~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~~~~~~---------------~~~~p~~i~~~~~g-~l~v~~~~~ 128 (270)
T 1rwi_B 65 GLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFD---------------GLNYPEGLAVDTQG-AVYVADRGN 128 (270)
T ss_dssp SCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCC---------------SCSSEEEEEECTTC-CEEEEEGGG
T ss_pred CcCCcceeEECCCCCEEEEcCCCEEEEEeCCCceEeeeecC---------------CcCCCcceEECCCC-CEEEEECCC
Confidence 467899999999999999997 8999999987644332111 02458899999876 6999875 4
Q ss_pred CeEEEEcC-CCccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC--CcEEEEcCCCeEEEEEeeccCCCCceee
Q psy8782 196 RIIKTTLG-DGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF--NLIRRIMTDGTVRTVVRLNVTRVAYRYH 272 (482)
Q Consensus 196 ~~i~~~~g-~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~--~~I~~i~~~G~v~~~~g~~~~~~~~p~g 272 (482)
+.+..+.. +...... ....+..|.+|+++++|+|||++. ++|+++++++....... ...+..|.+
T Consensus 129 ~~i~~~~~~~~~~~~~----------~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~--~~~~~~p~~ 196 (270)
T 1rwi_B 129 NRVVKLAAGSKTQTVL----------PFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLP--FTDITAPWG 196 (270)
T ss_dssp TEEEEECTTCCSCEEC----------CCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECC--CSSCCSEEE
T ss_pred CEEEEEECCCceeEee----------ccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeec--ccCCCCceE
Confidence 55655532 2111110 123456899999999999999998 79999998886443321 234578999
Q ss_pred EEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEE
Q psy8782 273 IAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILY 352 (482)
Q Consensus 273 iavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~ly 352 (482)
|++++ +|.|||++..+++|++++. ++....... ...+..|.+|+++++|+||
T Consensus 197 i~~d~-~g~l~v~~~~~~~v~~~~~-------~~~~~~~~~--------------------~~~~~~p~~i~~~~~g~l~ 248 (270)
T 1rwi_B 197 IAVDE-AGTVYVTEHNTNQVVKLLA-------GSTTSTVLP--------------------FTGLNTPLAVAVDSDRTVY 248 (270)
T ss_dssp EEECT-TCCEEEEETTTSCEEEECT-------TCSCCEECC--------------------CCSCSCEEEEEECTTCCEE
T ss_pred EEECC-CCCEEEEECCCCcEEEEcC-------CCCcceeec--------------------cCCCCCceeEEECCCCCEE
Confidence 99999 8899999999999999984 433222110 1126789999999999999
Q ss_pred EEECCC--EEEEcCC
Q psy8782 353 FADGTN--IRMVDRD 365 (482)
Q Consensus 353 vaD~~n--Ir~i~~~ 365 (482)
|++..+ |++++.+
T Consensus 249 v~~~~~~~v~~~~~~ 263 (270)
T 1rwi_B 249 VADRGNDRVVKLTSL 263 (270)
T ss_dssp EEEGGGTEEEEECCC
T ss_pred EEECCCCEEEEEcCC
Confidence 999876 8888753
No 36
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=99.79 E-value=1.2e-17 Score=184.57 Aligned_cols=193 Identities=17% Similarity=0.182 Sum_probs=139.9
Q ss_pred EEEcCCCcEEEEeCCcEEEEcCCCe-EEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcC-CCeEEEEc
Q psy8782 125 LATAPDGSLFVGDFNLIRRIMTDGT-VRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNK-PRIIKTTL 202 (482)
Q Consensus 125 lavd~~G~lyvaD~~~Irki~~~G~-v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~-~~~i~~~~ 202 (482)
.++++...|+++..+.||+++.++. .+.++.. +..|.+++++...+.||++|. .+.|..+.
T Consensus 390 ~~~~~~p~Ll~an~~~Ir~i~l~~~~~~~l~~~-----------------~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~ 452 (791)
T 3m0c_C 390 KAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPN-----------------LRNVVALDTEVASNRIYWSDLSQRMICSTQ 452 (791)
T ss_dssp EETTSCCEEEEECBSSEEEECTTSCCCEEEECS-----------------CSSEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred eecccccccccccccceeEeeccCCcceeeecC-----------------CCceEEEeecccCCeeEEeeccceeEEEEe
Confidence 4445556788888899999988753 3333321 346889999998889999996 45565554
Q ss_pred CCCccccCCCcCCCCCCCceeecCCccEEEEcCCC-CEEEEEC--CcEEEEcCCCeEEEEEeeccCCCCceeeEEEeCCC
Q psy8782 203 GDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDG-SLFVGDF--NLIRRIMTDGTVRTVVRLNVTRVAYRYHIAYSPLD 279 (482)
Q Consensus 203 g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G-~lyv~D~--~~I~~i~~~G~v~~~~g~~~~~~~~p~giavd~~~ 279 (482)
-.|..... .........|..|.|||+|..+ +||++|. ++|++++.+|+..+++.. ..+..|.+|||+|..
T Consensus 453 l~g~~~~~-----~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~--~~l~~P~gIaVDp~~ 525 (791)
T 3m0c_C 453 LDRAHGVS-----SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR--ENGSKPRAIVVDPVH 525 (791)
T ss_dssp C-------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE--CTTCCEEEEEEETTT
T ss_pred ccCCCCCc-----ceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEe--CCCCCcceEEEecCC
Confidence 33321000 0000022367899999999754 9999999 799999999976655542 457789999999978
Q ss_pred CeEEEEeCCC-CEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEe-CCCcEEEEECC
Q psy8782 280 GTLYISDPES-HQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVS-ADNILYFADGT 357 (482)
Q Consensus 280 g~lyVaD~~n-~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd-~~G~lyvaD~~ 357 (482)
+.||++|.++ ++|.+++ .+|....++.. ..|..|.|||+| ..+.|||+|..
T Consensus 526 g~LYwtD~g~~~~I~~~~-------~dG~~~~~lv~--------------------~~l~~P~GLavD~~~~~LYwaD~~ 578 (791)
T 3m0c_C 526 GFMYWTDWGTPAKIKKGG-------LNGVDIYSLVT--------------------ENIQWPNGITLDLLSGRLYWVDSK 578 (791)
T ss_dssp TEEEEEECSSSCEEEEEE-------TTSCCEEEEEC--------------------SSCSCEEEEEEETTTTEEEEEETT
T ss_pred CCEEEecCCCCCeEEEEe-------cCCCceEEEEe--------------------CCCCCceEEEEecCCCeEEEEeCC
Confidence 9999999887 8999999 46664433321 237899999999 57899999997
Q ss_pred C--EEEEcCCCcE
Q psy8782 358 N--IRMVDRDGIV 368 (482)
Q Consensus 358 n--Ir~i~~~G~i 368 (482)
+ |++++.+|..
T Consensus 579 ~~~I~~~d~dG~~ 591 (791)
T 3m0c_C 579 LHSISSIDVNGGN 591 (791)
T ss_dssp TTEEEEEETTSCS
T ss_pred CCcEEEEecCCCc
Confidence 7 9999998864
No 37
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.76 E-value=4.4e-17 Score=157.04 Aligned_cols=216 Identities=17% Similarity=0.160 Sum_probs=145.0
Q ss_pred cEEEEeCCcEEEEcCCCeEE------EEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcC-CCeEEEEcCC
Q psy8782 132 SLFVGDFNLIRRIMTDGTVR------TVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNK-PRIIKTTLGD 204 (482)
Q Consensus 132 ~lyvaD~~~Irki~~~G~v~------ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~-~~~i~~~~g~ 204 (482)
-||+++.++|++++.+|... .+... -...|.+++++++++.||++|. .+.|..+.-.
T Consensus 3 ~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~----------------~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~ 66 (267)
T 1npe_A 3 HLLFAQTGKIERLPLERNTMKKTEAKAFLHI----------------PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLH 66 (267)
T ss_dssp EEEEEEEEEEEEEEESSSCBCGGGCEEEEEE----------------EEEEEEEEEEETTTTEEEEEETTTTEEEEEESS
T ss_pred EEEEEcCCeEEEEEecCcccccccceeeecC----------------CCCcEEEEEEecCCCEEEEEECCCCEEEEEecC
Confidence 38899989999999887532 11111 0235899999999999999996 4566666544
Q ss_pred CccccCCCcCCCCCCCceeecCCccEEEEcCC-CCEEEEEC--CcEEEEcCCCeEEEEEeeccCCCCceeeEEEeCCCCe
Q psy8782 205 GHQRPLDCKDCNGEAGPKQRLLAPVALATAPD-GSLFVGDF--NLIRRIMTDGTVRTVVRLNVTRVAYRYHIAYSPLDGT 281 (482)
Q Consensus 205 G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~-G~lyv~D~--~~I~~i~~~G~v~~~~g~~~~~~~~p~giavd~~~g~ 281 (482)
|..... .....+..|.+|++|++ +.||++|. ++|.+++.+|...+.+. ...+..|.+|+++|.++.
T Consensus 67 g~~~~~---------~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~--~~~~~~P~~i~vd~~~g~ 135 (267)
T 1npe_A 67 GGEPTT---------IIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLF--DTGLVNPRGIVTDPVRGN 135 (267)
T ss_dssp SCCCEE---------EECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE--CSSCSSEEEEEEETTTTE
T ss_pred CCCcEE---------EEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEE--ECCCCCccEEEEeeCCCE
Confidence 432110 01134578999999985 79999998 79999999986443332 234678999999997789
Q ss_pred EEEEeCC--CCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCC-CcEEEEECCC
Q psy8782 282 LYISDPE--SHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSAD-NILYFADGTN 358 (482)
Q Consensus 282 lyVaD~~--n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~-G~lyvaD~~n 358 (482)
||++|.. +++|++++ .+|....+.. ...+..|.||++|++ +.|||+|..+
T Consensus 136 lyv~~~~~~~~~I~~~~-------~dg~~~~~~~--------------------~~~~~~P~gia~d~~~~~lyv~d~~~ 188 (267)
T 1npe_A 136 LYWTDWNRDNPKIETSH-------MDGTNRRILA--------------------QDNLGLPNGLTFDAFSSQLCWVDAGT 188 (267)
T ss_dssp EEEEECCSSSCEEEEEE-------TTSCCCEEEE--------------------CTTCSCEEEEEEETTTTEEEEEETTT
T ss_pred EEEEECCCCCcEEEEEe-------cCCCCcEEEE--------------------ECCCCCCcEEEEcCCCCEEEEEECCC
Confidence 9999987 68999998 3554222221 012678999999996 6899999976
Q ss_pred --EEEEcCCCcE-EEEEcCCCCCCCCCcCCCCceEEecccc-ceeEEee
Q psy8782 359 --IRMVDRDGIV-TTVIGNHMHKSHWKPIPCEGTLNIEEVS-ETMRDIR 403 (482)
Q Consensus 359 --Ir~i~~~G~i-~ti~G~~~~~~~~~~~~~dg~l~v~~~~-~~~~~l~ 403 (482)
|++++++|.. .+++ .....|....++ ++.||+++.. .++.+++
T Consensus 189 ~~I~~~~~~g~~~~~~~-~~~~~P~gi~~d-~~~lyva~~~~~~v~~~d 235 (267)
T 1npe_A 189 HRAECLNPAQPGRRKVL-EGLQYPFAVTSY-GKNLYYTDWKTNSVIAMD 235 (267)
T ss_dssp TEEEEEETTEEEEEEEE-ECCCSEEEEEEE-TTEEEEEETTTTEEEEEE
T ss_pred CEEEEEecCCCceEEEe-cCCCCceEEEEe-CCEEEEEECCCCeEEEEe
Confidence 9999998753 3333 222222222222 3456665542 3444444
No 38
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=99.76 E-value=4.2e-17 Score=162.27 Aligned_cols=220 Identities=20% Similarity=0.185 Sum_probs=153.8
Q ss_pred CCcEEEEeCCcEEEEcCCCe---EEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcC-CCeEEEEcCCC
Q psy8782 130 DGSLFVGDFNLIRRIMTDGT---VRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNK-PRIIKTTLGDG 205 (482)
Q Consensus 130 ~G~lyvaD~~~Irki~~~G~---v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~-~~~i~~~~g~G 205 (482)
+--|+++..+.|++++.++. .+.++.. +..|.++.++..++.||++|. .+.|..+.-.|
T Consensus 4 ~p~ll~~~~~~I~~i~l~~~~~~~~~~~~~-----------------~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g 66 (318)
T 3sov_A 4 APLLLYANRRDLRLVDATNGKENATIVVGG-----------------LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNK 66 (318)
T ss_dssp CCEEEEECEEEEEEEETTCTTSCCEEEEEE-----------------EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTS
T ss_pred ccEEEEEccCeEEEEECCCCceEEEEEecC-----------------CCccEEEEEEeCCCEEEEEECCCCcEEEEEccC
Confidence 34588998899999998874 3333321 235778899998889999996 45666654443
Q ss_pred ccccCCCcCCCCCCCceeecCCccEEEEcC-CCCEEEEEC--CcEEEEcCCCeEEEEEeeccCCCCceeeEEEeCCCCeE
Q psy8782 206 HQRPLDCKDCNGEAGPKQRLLAPVALATAP-DGSLFVGDF--NLIRRIMTDGTVRTVVRLNVTRVAYRYHIAYSPLDGTL 282 (482)
Q Consensus 206 ~~~~~~~~~~~g~~~~~~~l~~P~giavd~-~G~lyv~D~--~~I~~i~~~G~v~~~~g~~~~~~~~p~giavd~~~g~l 282 (482)
.... .......+..|.|||+|+ .|+||++|. ++|.+++++|...+.+. ...+..|.+|+++|.+|.|
T Consensus 67 ~~~~--------~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~--~~~~~~P~giavdp~~g~l 136 (318)
T 3sov_A 67 TESV--------QNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLF--WQELDQPRAIALDPSSGFM 136 (318)
T ss_dssp SSCC--------CEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE--CSSCSSEEEEEEEGGGTEE
T ss_pred CCce--------EEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEE--eCCCCCccEEEEeCCCCEE
Confidence 3110 000235678999999996 789999999 79999999997655543 3567899999999878999
Q ss_pred EEEeCC-CCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeC-CCcEEEEECCC--
Q psy8782 283 YISDPE-SHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSA-DNILYFADGTN-- 358 (482)
Q Consensus 283 yVaD~~-n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~-~G~lyvaD~~n-- 358 (482)
|++|.. +++|++++ .+|....+.. ...+..|.|||+|+ ++.||++|+.+
T Consensus 137 y~td~~~~~~I~r~~-------~dG~~~~~~~--------------------~~~l~~Pnglavd~~~~~lY~aD~~~~~ 189 (318)
T 3sov_A 137 YWTDWGEVPKIERAG-------MDGSSRFIII--------------------NSEIYWPNGLTLDYEEQKLYWADAKLNF 189 (318)
T ss_dssp EEEECSSSCEEEEEE-------TTSCSCEEEE--------------------CSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred EEEecCCCCEEEEEE-------cCCCCeEEEE--------------------ECCCCCccEEEEeccCCEEEEEECCCCE
Confidence 999975 79999999 4665332221 11278899999997 68899999977
Q ss_pred EEEEcCCCcE-EEEEcCCCCCCCCCcCCCCceEEecccc-ceeEEeec
Q psy8782 359 IRMVDRDGIV-TTVIGNHMHKSHWKPIPCEGTLNIEEVS-ETMRDIRH 404 (482)
Q Consensus 359 Ir~i~~~G~i-~ti~G~~~~~~~~~~~~~dg~l~v~~~~-~~~~~l~~ 404 (482)
|++++.+|.. .+++......|.+..+. .+.+|+++.. .+|.+++.
T Consensus 190 I~~~d~dG~~~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~~~~~ 236 (318)
T 3sov_A 190 IHKSNLDGTNRQAVVKGSLPHPFALTLF-EDILYWTDWSTHSILACNK 236 (318)
T ss_dssp EEEEETTSCSCEEEECSCCSCEEEEEEE-TTEEEEEETTTTEEEEEET
T ss_pred EEEEcCCCCceEEEecCCCCCceEEEEe-CCEEEEEecCCCeEEEEEC
Confidence 9999998864 34442233333334443 3467766653 35665554
No 39
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=99.74 E-value=6.8e-18 Score=185.15 Aligned_cols=212 Identities=20% Similarity=0.246 Sum_probs=152.4
Q ss_pred ccCCCceEEEEcC-CCcEEEEeC--CcEEEEcCCCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEc
Q psy8782 117 QRLLAPVALATAP-DGSLFVGDF--NLIRRIMTDGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKN 193 (482)
Q Consensus 117 ~~l~~P~glavd~-~G~lyvaD~--~~Irki~~~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d 193 (482)
..+..|.+|++++ ++.||++|. ++|++++++|... +..... .....+..|.|++++..+++||++|
T Consensus 403 ~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~---~~~~~~--------~i~~~~~~P~glavD~~~g~LY~tD 471 (699)
T 1n7d_A 403 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG---VSSYDT--------VISRDIQAPDGLAVDWIHSNIYWTD 471 (699)
T ss_dssp CCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC----CCCCC--------BCCSCC--CCCEECCCSSSBCEECC
T ss_pred ccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCC---CcceEE--------EEeCCCCCcceEEEEeeCCcEEEEe
Confidence 3577899999997 578999998 8999999886210 000000 0001134699999998888999998
Q ss_pred C-CCeEEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcC-CCCEEEEEC---CcEEEEcCCCeEEEEEeeccCCCC
Q psy8782 194 K-PRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAP-DGSLFVGDF---NLIRRIMTDGTVRTVVRLNVTRVA 268 (482)
Q Consensus 194 ~-~~~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~-~G~lyv~D~---~~I~~i~~~G~v~~~~g~~~~~~~ 268 (482)
. .+.|..+...|...... ....+..|.+|++|| .|.||++|+ ++|.+++.+|...+++. ...+.
T Consensus 472 ~~~~~I~v~d~dg~~~~~l---------~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~--~~~l~ 540 (699)
T 1n7d_A 472 SVLGTVSVADTKGVKRKTL---------FREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV--TENIQ 540 (699)
T ss_dssp TTTSCEEEEBSSSCCEEEE---------CCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEES--CSSCS
T ss_pred ccCCeEEEEecCCCceEEE---------EeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEE--eCCCC
Confidence 6 45666666555432110 223567899999998 579999997 58999999997665543 24578
Q ss_pred ceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCc-EEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeC
Q psy8782 269 YRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYN-VEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSA 347 (482)
Q Consensus 269 ~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~-~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~ 347 (482)
+|+|||+++.++.||++|..+++|++++. +|. ..+++.. ...+.+|.||+++.
T Consensus 541 ~PnGlavd~~~~~LY~aD~~~~~I~~~d~-------dG~~~~~~~~~-------------------~~~~~~P~glavd~ 594 (699)
T 1n7d_A 541 WPNGITLDLLSGRLYWVDSKLHSISSIDV-------NGGNRKTILED-------------------EKRLAHPFSLAVFE 594 (699)
T ss_dssp SCCCEEECTTTCCEEEEETTTTEEEEECS-------SSSCCEEECCC-------------------SSSCSSCCCCEEET
T ss_pred CccEEEEeccCCEEEEEecCCCeEEEEcc-------CCCceEEEEec-------------------CCcCCCceEeEEEC
Confidence 99999999978899999999999999994 443 2333210 13478999999996
Q ss_pred CCcEEEEECCC--EEEEcC-CCcEEEEEcCCCC
Q psy8782 348 DNILYFADGTN--IRMVDR-DGIVTTVIGNHMH 377 (482)
Q Consensus 348 ~G~lyvaD~~n--Ir~i~~-~G~i~ti~G~~~~ 377 (482)
+ .||++|..+ |+++++ +|...+++..+..
T Consensus 595 ~-~lywtd~~~~~V~~~d~~~G~~~~~i~~~~~ 626 (699)
T 1n7d_A 595 D-KVFWTDIINEAIFSANRLTGSDVNLLAENLL 626 (699)
T ss_dssp T-EEEEECSTTTCEEEEETTTEEEEECCCTTCS
T ss_pred C-EEEEEeCCCCeEEEEEccCCCceEEeecCCC
Confidence 5 899999876 999986 6887776655443
No 40
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.73 E-value=1.7e-15 Score=147.63 Aligned_cols=230 Identities=18% Similarity=0.225 Sum_probs=160.1
Q ss_pred ccCCCceEEEEcCCCc-EEEEeC--CcEEEEcCCCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEc
Q psy8782 117 QRLLAPVALATAPDGS-LFVGDF--NLIRRIMTDGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKN 193 (482)
Q Consensus 117 ~~l~~P~glavd~~G~-lyvaD~--~~Irki~~~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d 193 (482)
..+..|.+++++++|+ ||+++. ++|+++++++.+..+... ...|.++++++++ ++|+++
T Consensus 25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~~~~~~~~-----------------~~~~~~l~~~~dg-~l~v~~ 86 (296)
T 3e5z_A 25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQLSPEMHP-----------------SHHQNGHCLNKQG-HLIACS 86 (296)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSCEEEEESS-----------------CSSEEEEEECTTC-CEEEEE
T ss_pred cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCCeEEEECC-----------------CCCcceeeECCCC-cEEEEe
Confidence 4577899999999998 999997 899999998764444321 1247888888877 578877
Q ss_pred C-CCeEEEEcC-CCccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC-------------------CcEEEEcC
Q psy8782 194 K-PRIIKTTLG-DGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF-------------------NLIRRIMT 252 (482)
Q Consensus 194 ~-~~~i~~~~g-~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~-------------------~~I~~i~~ 252 (482)
. .+.+..+.. +|+....... .....+..|.+++++++|+|||+|. +.|+++++
T Consensus 87 ~~~~~i~~~d~~~g~~~~~~~~------~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~ 160 (296)
T 3e5z_A 87 HGLRRLERQREPGGEWESIADS------FEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAP 160 (296)
T ss_dssp TTTTEEEEECSTTCCEEEEECE------ETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECT
T ss_pred cCCCeEEEEcCCCCcEEEEeec------cCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECC
Confidence 5 356666654 5554321100 0124567899999999999999874 38999999
Q ss_pred CCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcE---EEEecCCcccCCCCCCccCCC
Q psy8782 253 DGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNV---EPAVGSGERCLPGDEAHCGDG 329 (482)
Q Consensus 253 ~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~---~~vaG~g~~~~~g~~~~~gdg 329 (482)
+|++..+. ..+..|++|+++| ++.+++++..+++|++++.. .+|.+ ..+. .
T Consensus 161 ~g~~~~~~----~~~~~~~gi~~s~-dg~~lv~~~~~~~i~~~~~~-----~~g~~~~~~~~~-~--------------- 214 (296)
T 3e5z_A 161 DGTLSAPI----RDRVKPNGLAFLP-SGNLLVSDTGDNATHRYCLN-----ARGETEYQGVHF-T--------------- 214 (296)
T ss_dssp TSCEEEEE----CCCSSEEEEEECT-TSCEEEEETTTTEEEEEEEC-----SSSCEEEEEEEE-C---------------
T ss_pred CCCEEEee----cCCCCCccEEECC-CCCEEEEeCCCCeEEEEEEC-----CCCcCcCCCeEe-e---------------
Confidence 98877664 3467899999999 66655999999999999852 24544 1111 1
Q ss_pred ccccccccCCcceEEEeCCCcEEEEECCCEEEEcCCCcEEEEEcCCCCCCCCCcC-CCCc-eEEeccccceeEEee
Q psy8782 330 APARDAKLAYPKGVAVSADNILYFADGTNIRMVDRDGIVTTVIGNHMHKSHWKPI-PCEG-TLNIEEVSETMRDIR 403 (482)
Q Consensus 330 ~~a~~a~l~~P~giavd~~G~lyvaD~~nIr~i~~~G~i~ti~G~~~~~~~~~~~-~~dg-~l~v~~~~~~~~~l~ 403 (482)
.....|.+|++|++|+|||++.+.|++++++|.....+..+.. +....+ ..++ .||+.... .+.++.
T Consensus 215 -----~~~~~p~~i~~d~~G~l~v~~~~~v~~~~~~g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~ 283 (296)
T 3e5z_A 215 -----VEPGKTDGLRVDAGGLIWASAGDGVHVLTPDGDELGRVLTPQT-TSNLCFGGPEGRTLYMTVST-EFWSIE 283 (296)
T ss_dssp -----CSSSCCCSEEEBTTSCEEEEETTEEEEECTTSCEEEEEECSSC-CCEEEEESTTSCEEEEEETT-EEEEEE
T ss_pred -----CCCCCCCeEEECCCCCEEEEcCCeEEEECCCCCEEEEEECCCC-ceeEEEECCCCCEEEEEcCC-eEEEEE
Confidence 1135789999999999999994449999999987665544433 333444 3454 57775532 344443
No 41
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.71 E-value=1.2e-15 Score=151.09 Aligned_cols=195 Identities=13% Similarity=0.141 Sum_probs=138.1
Q ss_pred ccCCCceEEEEcC-CCcEEEEeC-CcEEEEcCC-CeEEEEEeeCCCcccCCCccccccccccCCceEEEec-CCCeEEEE
Q psy8782 117 QRLLAPVALATAP-DGSLFVGDF-NLIRRIMTD-GTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKG-DGSNIYLK 192 (482)
Q Consensus 117 ~~l~~P~glavd~-~G~lyvaD~-~~Irki~~~-G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~-~g~~lyi~ 192 (482)
..+..|.+|++++ +|+|||+|. +.|++++++ |.+++++..... ..+..|+++++++ +| ++|++
T Consensus 77 ~~~~~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~------------~~~~~p~~i~~d~~~G-~l~v~ 143 (322)
T 2fp8_A 77 PLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDG------------VPFKWLYAVTVDQRTG-IVYFT 143 (322)
T ss_dssp HHHCCEEEEEEETTTTEEEEEETTTEEEEECTTCEECEEEESEETT------------EECSCEEEEEECTTTC-CEEEE
T ss_pred ccCCCCceEEEcCCCCcEEEEECCCCEEEEeCCCCEEEEecccCCC------------CcccccceEEEecCCC-EEEEE
Confidence 3467899999997 899999998 789999987 445555432110 1134689999998 66 89998
Q ss_pred cCC------------------CeEEEEcC-CCccccCCCcCCCCCCCceeecCCccEEEEcCCCC-EEEEEC--CcEEEE
Q psy8782 193 NKP------------------RIIKTTLG-DGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGS-LFVGDF--NLIRRI 250 (482)
Q Consensus 193 d~~------------------~~i~~~~g-~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~-lyv~D~--~~I~~i 250 (482)
|.. +.+..+.. +++... ....+..|.+|+++++|. |||+|. ++|+++
T Consensus 144 d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~-----------~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~ 212 (322)
T 2fp8_A 144 DVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTL-----------LLKELHVPGGAEVSADSSFVLVAEFLSHQIVKY 212 (322)
T ss_dssp ESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEE-----------EEEEESCCCEEEECTTSSEEEEEEGGGTEEEEE
T ss_pred CCcccccccccceehcccCCCceEEEEeCCCCEEEE-----------eccCCccCcceEECCCCCEEEEEeCCCCeEEEE
Confidence 753 22333322 222211 234578999999999986 999998 799999
Q ss_pred cCCC----eEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCC----------CCEEEEEecCCccCCCCCcEEEEecCCc
Q psy8782 251 MTDG----TVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPE----------SHQILRVKNAMDFSAPDYNVEPAVGSGE 316 (482)
Q Consensus 251 ~~~G----~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~----------n~~I~~~~~~~~~~~~~g~~~~vaG~g~ 316 (482)
+.++ ....+.. . .. |.+|++|+ +|+|||++.. +++|.+++ ++|.+.......
T Consensus 213 ~~~~~~~~~~~~~~~--~--~g-P~gi~~d~-~G~l~va~~~~~~~~~~~~~~~~v~~~d-------~~G~~~~~~~~~- 278 (322)
T 2fp8_A 213 WLEGPKKGTAEVLVK--I--PN-PGNIKRNA-DGHFWVSSSEELDGNMHGRVDPKGIKFD-------EFGNILEVIPLP- 278 (322)
T ss_dssp ESSSTTTTCEEEEEE--C--SS-EEEEEECT-TSCEEEEEEEETTSSTTSCEEEEEEEEC-------TTSCEEEEEECC-
T ss_pred ECCCCcCCccceEEe--C--CC-CCCeEECC-CCCEEEEecCcccccccCCCccEEEEEC-------CCCCEEEEEECC-
Confidence 9774 4433332 1 12 99999999 8999999976 68899998 677765544321
Q ss_pred ccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEECCC--EEEEcCCC
Q psy8782 317 RCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADGTN--IRMVDRDG 366 (482)
Q Consensus 317 ~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~~n--Ir~i~~~G 366 (482)
+| ..+..|.+++++ +|.|||++..+ |.+++++.
T Consensus 279 -----------~g-----~~~~~~~~~~~~-~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 279 -----------PP-----FAGEHFEQIQEH-DGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp -----------TT-----TTTSCCCEEEEE-TTEEEEECSSCSEEEEEEC--
T ss_pred -----------CC-----CccccceEEEEe-CCEEEEeecCCCceEEEeccc
Confidence 12 127789999885 89999999765 88887653
No 42
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=99.71 E-value=3.7e-15 Score=150.40 Aligned_cols=157 Identities=20% Similarity=0.289 Sum_probs=108.5
Q ss_pred cCCCceEEEEcCCCcEEEEeC-CcEEEEcCCCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCCC
Q psy8782 118 RLLAPVALATAPDGSLFVGDF-NLIRRIMTDGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKPR 196 (482)
Q Consensus 118 ~l~~P~glavd~~G~lyvaD~-~~Irki~~~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~~ 196 (482)
.|..|++|+++++|+|||+|. ++|++++++|. +.+.....
T Consensus 27 ~l~~P~~ia~~pdG~l~V~e~~g~I~~~d~~G~-~~~~~~~v-------------------------------------- 67 (354)
T 3a9g_A 27 DLEVPWSIAPLGGGRYLVTERPGRLVLISPSGK-KLVASFDV-------------------------------------- 67 (354)
T ss_dssp SCSCEEEEEEEETTEEEEEETTTEEEEECSSCE-EEEEECCC--------------------------------------
T ss_pred CCCCCeEEEEcCCCeEEEEeCCCEEEEEeCCCc-eEeeccce--------------------------------------
Confidence 578999999999999999999 89999998887 55443210
Q ss_pred eEEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcCC----CCEEEEEC---------CcEEEEcCCCe------EE
Q psy8782 197 IIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPD----GSLFVGDF---------NLIRRIMTDGT------VR 257 (482)
Q Consensus 197 ~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~----G~lyv~D~---------~~I~~i~~~G~------v~ 257 (482)
....+..|.+|+++|+ |.|||++. ++|.|++.++. ..
T Consensus 68 ------------------------~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~ 123 (354)
T 3a9g_A 68 ------------------------ANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVK 123 (354)
T ss_dssp ------------------------CCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEE
T ss_pred ------------------------eecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccE
Confidence 0012346889999986 89999885 68999986653 22
Q ss_pred EEEe-eccCCCCceeeEEEeCCCCeEEEEeCC-------------CCEEEEEecCCccCCCCCcEEEEecCCcccCCCCC
Q psy8782 258 TVVR-LNVTRVAYRYHIAYSPLDGTLYISDPE-------------SHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDE 323 (482)
Q Consensus 258 ~~~g-~~~~~~~~p~giavd~~~g~lyVaD~~-------------n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~ 323 (482)
.++. ........|.+|+++| +|.|||++.. .++|+|++ ++|.+. .++
T Consensus 124 ~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~-------~dG~~p--~~n--------- 184 (354)
T 3a9g_A 124 TLIDGIPGAYIHNGGRIRFGP-DGMLYITTGDAADPRLAQDLSSLAGKILRVD-------EEGRPP--ADN--------- 184 (354)
T ss_dssp EEEEEEECCSSCCCCCEEECT-TSCEEEECCCTTCGGGGTCTTCCSSEEEEEC-------TTSCCC--TTS---------
T ss_pred EEEEcCCCCCCcCCceEEECC-CCcEEEEECCCCCCccccCCCCCCeEEEEEc-------CCCCCC--CCC---------
Confidence 2322 2233445689999999 8999999632 36899998 454310 000
Q ss_pred CccCCCccccccccCCcceEEEeC-CCcEEEEECCC
Q psy8782 324 AHCGDGAPARDAKLAYPKGVAVSA-DNILYFADGTN 358 (482)
Q Consensus 324 ~~~gdg~~a~~a~l~~P~giavd~-~G~lyvaD~~n 358 (482)
.+.. ..-...-|.+|.||++|+ +|.||++|.+.
T Consensus 185 pf~~--~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~ 218 (354)
T 3a9g_A 185 PFPN--SPIWSYGHRNPQGIDWHRASGVMVATEHGP 218 (354)
T ss_dssp SSTT--CCEEEECCSCCCEEEECTTTCCEEEEECCS
T ss_pred CCCC--CcEEEEccCCcceEEEeCCCCCEEEEecCC
Confidence 0000 001112278999999999 89999999875
No 43
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.70 E-value=2.2e-15 Score=148.09 Aligned_cols=222 Identities=19% Similarity=0.194 Sum_probs=154.6
Q ss_pred ccCCCceEEEEcCCCc-EEEEeC--CcEEEEcCCCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEc
Q psy8782 117 QRLLAPVALATAPDGS-LFVGDF--NLIRRIMTDGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKN 193 (482)
Q Consensus 117 ~~l~~P~glavd~~G~-lyvaD~--~~Irki~~~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d 193 (482)
..+..|.|++++++|+ ||++|. ++|.+++++|.+..+... ...|++++++++| ++|+++
T Consensus 42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~~~~~~~~-----------------~~~~~gl~~d~dG-~l~v~~ 103 (305)
T 3dr2_A 42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGTVDVLLDA-----------------TAFTNGNAVDAQQ-RLVHCE 103 (305)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSCEEEEEES-----------------CSCEEEEEECTTS-CEEEEE
T ss_pred cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCCEEEEeCC-----------------CCccceeeECCCC-CEEEEE
Confidence 3456789999999998 999998 899999999887665432 1347899999887 588886
Q ss_pred C-CCeEEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC-------------------CcEEEEcC-
Q psy8782 194 K-PRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF-------------------NLIRRIMT- 252 (482)
Q Consensus 194 ~-~~~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~-------------------~~I~~i~~- 252 (482)
. .+.+..+..+|+....... .....++.|.+++++++|+|||+|. +.|+++++
T Consensus 104 ~~~~~v~~~~~~g~~~~~~~~------~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~ 177 (305)
T 3dr2_A 104 HGRRAITRSDADGQAHLLVGR------YAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPD 177 (305)
T ss_dssp TTTTEEEEECTTSCEEEEECE------ETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSS
T ss_pred CCCCEEEEECCCCCEEEEEec------cCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCC
Confidence 5 3566666544554221100 0224578899999999999999873 46999998
Q ss_pred CCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCC-----CEEEEEecCCccCCCCC--cEEEEecCCcccCCCCCCc
Q psy8782 253 DGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPES-----HQILRVKNAMDFSAPDY--NVEPAVGSGERCLPGDEAH 325 (482)
Q Consensus 253 ~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n-----~~I~~~~~~~~~~~~~g--~~~~vaG~g~~~~~g~~~~ 325 (482)
+|++..+. .+..|++++++|++..|||+|+.. ++|++++... .+ ....++.
T Consensus 178 ~g~~~~~~-----~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~-----~~l~~~~~~~~------------ 235 (305)
T 3dr2_A 178 GSPLQRMA-----DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRD-----GALHDRRHFAS------------ 235 (305)
T ss_dssp SCCCEEEE-----EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEET-----TEEEEEEEEEC------------
T ss_pred CCcEEEEe-----cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecC-----CCccCCeEEEE------------
Confidence 57776654 356799999999444699999974 8999998521 11 0111110
Q ss_pred cCCCccccccccCCcceEEEeCCCcEEEEECCCEEEEcCCCcEEEEEcCCCCCCCCCcCCCCc-eEEecc
Q psy8782 326 CGDGAPARDAKLAYPKGVAVSADNILYFADGTNIRMVDRDGIVTTVIGNHMHKSHWKPIPCEG-TLNIEE 394 (482)
Q Consensus 326 ~gdg~~a~~a~l~~P~giavd~~G~lyvaD~~nIr~i~~~G~i~ti~G~~~~~~~~~~~~~dg-~l~v~~ 394 (482)
.....|.||++|++|+||++....|.+++++|.....+..+.. +....+..++ .||+..
T Consensus 236 ---------~~~~~pdgi~~d~~G~lwv~~~~gv~~~~~~g~~~~~~~~~~~-~~~~~f~~d~~~L~it~ 295 (305)
T 3dr2_A 236 ---------VPDGLPDGFCVDRGGWLWSSSGTGVCVFDSDGQLLGHIPTPGT-ASNCTFDQAQQRLFITG 295 (305)
T ss_dssp ---------CSSSCCCSEEECTTSCEEECCSSEEEEECTTSCEEEEEECSSC-CCEEEECTTSCEEEEEE
T ss_pred ---------CCCCCCCeEEECCCCCEEEecCCcEEEECCCCCEEEEEECCCc-eeEEEEeCCCCEEEEEc
Confidence 0124699999999999999996669999999987655544432 2223444454 577654
No 44
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.70 E-value=2e-15 Score=147.93 Aligned_cols=228 Identities=12% Similarity=0.086 Sum_probs=152.6
Q ss_pred ccCCCceEEEEcC-CCcEEEEeC--CcEEEEcCCCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEc
Q psy8782 117 QRLLAPVALATAP-DGSLFVGDF--NLIRRIMTDGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKN 193 (482)
Q Consensus 117 ~~l~~P~glavd~-~G~lyvaD~--~~Irki~~~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d 193 (482)
..+..|.|.+.++ ++.||++|. ++|.++++++.....+... ..|.+++++++++ +|++.
T Consensus 10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~-----------------~~~~~i~~~~dG~-l~v~~ 71 (297)
T 3g4e_A 10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVTMD-----------------APVSSVALRQSGG-YVATI 71 (297)
T ss_dssp CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECS-----------------SCEEEEEEBTTSS-EEEEE
T ss_pred cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEeCC-----------------CceEEEEECCCCC-EEEEE
Confidence 4566789999998 578999998 8999999875433333221 2467888888775 77776
Q ss_pred CCCeEEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC-------------CcEEEEcCCCeEEEEE
Q psy8782 194 KPRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF-------------NLIRRIMTDGTVRTVV 260 (482)
Q Consensus 194 ~~~~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~-------------~~I~~i~~~G~v~~~~ 260 (482)
..++...-..+++........ ....+..|.++++|++|+||+++. ..|++++++|++..+.
T Consensus 72 ~~~l~~~d~~~g~~~~~~~~~------~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~ 145 (297)
T 3g4e_A 72 GTKFCALNWKEQSAVVLATVD------NDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYF 145 (297)
T ss_dssp TTEEEEEETTTTEEEEEEECC------TTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEE
T ss_pred CCeEEEEECCCCcEEEEEecC------CCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEe
Confidence 544444334445432211000 112345789999999999999983 3799999999877664
Q ss_pred eeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEE---EEecCCcccCCCCCCccCCCcccccccc
Q psy8782 261 RLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVE---PAVGSGERCLPGDEAHCGDGAPARDAKL 337 (482)
Q Consensus 261 g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~---~vaG~g~~~~~g~~~~~gdg~~a~~a~l 337 (482)
. .+..|++|+++|+...||++|+.+++|++++... .+|.+. .++-. . ...
T Consensus 146 ~----~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~----~~G~~~~~~~~~~~------------~-------~~~ 198 (297)
T 3g4e_A 146 D----QVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDL----QTGQISNRRSVYKL------------E-------KEE 198 (297)
T ss_dssp E----EESBEEEEEECTTSCEEEEEEGGGTEEEEEEECT----TTCCEEEEEEEEEC------------C-------GGG
T ss_pred e----ccccccceEEcCCCCEEEEecCCCCcEEEEeccC----CCCcccCcEEEEEC------------C-------CCC
Confidence 3 3567999999995557999999999999998421 245432 12110 0 012
Q ss_pred CCcceEEEeCCCcEEEEECCC--EEEEcCC-CcEEEEEcCCCCCCCCCcCC-CCc-eEEeccc
Q psy8782 338 AYPKGVAVSADNILYFADGTN--IRMVDRD-GIVTTVIGNHMHKSHWKPIP-CEG-TLNIEEV 395 (482)
Q Consensus 338 ~~P~giavd~~G~lyvaD~~n--Ir~i~~~-G~i~ti~G~~~~~~~~~~~~-~dg-~l~v~~~ 395 (482)
..|.||++|++|+|||++... |.+++++ |++...+..+...+...++. +|+ .|||...
T Consensus 199 ~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 199 QIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp CEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred CCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence 469999999999999998755 9999996 98766664443322223333 343 5666443
No 45
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.70 E-value=4.7e-15 Score=144.80 Aligned_cols=234 Identities=15% Similarity=0.140 Sum_probs=157.9
Q ss_pred cccCCCceEEEEcCCCcEEEE-------eC--CcEEEEcC-CCeEEEEEeeCCCcccCCCccccccccccCCceEEEecC
Q psy8782 116 KQRLLAPVALATAPDGSLFVG-------DF--NLIRRIMT-DGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGD 185 (482)
Q Consensus 116 ~~~l~~P~glavd~~G~lyva-------D~--~~Irki~~-~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~ 185 (482)
...|..|.+++++++|.||++ +. ++|.++++ +|++..+...... .....|.+++++++
T Consensus 14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~------------~~~~~~~~i~~~~~ 81 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVN------------GYGGIPAGCQCDRD 81 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEET------------TEECCEEEEEECSS
T ss_pred hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccC------------CCCCCCceEEEecC
Confidence 346788999999999999999 65 78999995 6777665420000 01235889999988
Q ss_pred CCeEEEEcCCCeEEEEcCCCccccC-CCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC-----------------CcE
Q psy8782 186 GSNIYLKNKPRIIKTTLGDGHQRPL-DCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF-----------------NLI 247 (482)
Q Consensus 186 g~~lyi~d~~~~i~~~~g~G~~~~~-~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~-----------------~~I 247 (482)
++++|+++....+..+...|+.... ... .....+..|.+|++|++|+|||++. +.|
T Consensus 82 ~g~l~v~~~~~~l~~~d~~g~~~~~~~~~------~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l 155 (314)
T 1pjx_A 82 ANQLFVADMRLGLLVVQTDGTFEEIAKKD------SEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSI 155 (314)
T ss_dssp SSEEEEEETTTEEEEEETTSCEEECCSBC------TTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEE
T ss_pred CCcEEEEECCCCEEEEeCCCCEEEEEecc------CCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeE
Confidence 5689998865555555444554321 100 0112346799999999999999997 369
Q ss_pred EEEcCCCeEEEEEeeccCCCCceeeEEEe----CCCC-eEEEEeCCCCEEEEEecCCccCCCCCcEE---EEecCCcccC
Q psy8782 248 RRIMTDGTVRTVVRLNVTRVAYRYHIAYS----PLDG-TLYISDPESHQILRVKNAMDFSAPDYNVE---PAVGSGERCL 319 (482)
Q Consensus 248 ~~i~~~G~v~~~~g~~~~~~~~p~giavd----~~~g-~lyVaD~~n~~I~~~~~~~~~~~~~g~~~---~vaG~g~~~~ 319 (482)
++++++|++..+.. .+..|.+++++ + ++ .||+++..+++|++++.. .+|.+. .+...
T Consensus 156 ~~~~~~g~~~~~~~----~~~~~~~i~~~~~~d~-dg~~l~v~~~~~~~i~~~~~~-----~~g~~~~~~~~~~~----- 220 (314)
T 1pjx_A 156 YCFTTDGQMIQVDT----AFQFPNGIAVRHMNDG-RPYQLIVAETPTKKLWSYDIK-----GPAKIENKKVWGHI----- 220 (314)
T ss_dssp EEECTTSCEEEEEE----EESSEEEEEEEECTTS-CEEEEEEEETTTTEEEEEEEE-----ETTEEEEEEEEEEC-----
T ss_pred EEECCCCCEEEecc----CCCCcceEEEecccCC-CCCEEEEEECCCCeEEEEECC-----CCCccccceEEEEC-----
Confidence 99998888766643 34578999999 9 65 799999999999999842 123322 11110
Q ss_pred CCCCCccCCCccccccccCCcceEEEeCCCcEEEEECCC--EEEEcCC-CcEEEEEcCCCCCCCCCcCCCCce-EEeccc
Q psy8782 320 PGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADGTN--IRMVDRD-GIVTTVIGNHMHKSHWKPIPCEGT-LNIEEV 395 (482)
Q Consensus 320 ~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~~n--Ir~i~~~-G~i~ti~G~~~~~~~~~~~~~dg~-l~v~~~ 395 (482)
.+ ..+..|.+|++|++|+|||++..+ |++++++ |.+...+..+...+....++++|. ||+...
T Consensus 221 --------~~-----~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~ 287 (314)
T 1pjx_A 221 --------PG-----THEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEH 287 (314)
T ss_dssp --------CC-----CSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred --------CC-----CCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeC
Confidence 00 012568999999999999998543 9999987 775444443322223344456665 776543
No 46
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=99.69 E-value=1.1e-16 Score=175.43 Aligned_cols=191 Identities=17% Similarity=0.189 Sum_probs=133.8
Q ss_pred EcCCCcEEEEeCCcEEEEcCCCe-EEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcC-CCeEEEEcCC
Q psy8782 127 TAPDGSLFVGDFNLIRRIMTDGT-VRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNK-PRIIKTTLGD 204 (482)
Q Consensus 127 vd~~G~lyvaD~~~Irki~~~G~-v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~-~~~i~~~~g~ 204 (482)
+++...|+++..+.|++++.++. ++.++.. +..|.++++++.++.||++|. .+.|..+.-.
T Consensus 374 ~~~~~~ll~~~~~~I~~id~~~~~~~~~~~~-----------------~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~ 436 (699)
T 1n7d_A 374 VGSIAYLFFTNRHEVRKMTLDRSEYTSLIPN-----------------LRNVVALDTEVASNRIYWSDLSQRMICSTQLD 436 (699)
T ss_dssp CSSCCCBCCCCTTC-CEECTTSCCEECCSCC-----------------CTTCCCCEEETTTTEEEECCTTTTSBEEEESC
T ss_pred cccceeEEecCccceEEEeCCCCcceeeecc-----------------CcceEEEccccccCeEEEEecCCCeEEEEecC
Confidence 35566788888899999988754 3333211 346899999998999999986 3455544333
Q ss_pred CccccCCCcCCCCCCCceeecCCccEEEEcC-CCCEEEEEC--CcEEEEcCCCeEEEEEeeccCCCCceeeEEEeCCCCe
Q psy8782 205 GHQRPLDCKDCNGEAGPKQRLLAPVALATAP-DGSLFVGDF--NLIRRIMTDGTVRTVVRLNVTRVAYRYHIAYSPLDGT 281 (482)
Q Consensus 205 G~~~~~~~~~~~g~~~~~~~l~~P~giavd~-~G~lyv~D~--~~I~~i~~~G~v~~~~g~~~~~~~~p~giavd~~~g~ 281 (482)
+.... ..........+..|.+||+|. .++|||+|. ++|++++++|...+.+. ...+..|.+||++|..+.
T Consensus 437 g~~~~-----~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~--~~~~~~P~giavDp~~g~ 509 (699)
T 1n7d_A 437 RAHGV-----SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF--REQGSKPRAIVVDPVHGF 509 (699)
T ss_dssp CCCC------CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEEC--CCSSCCCCCEECCSSSSC
T ss_pred CCCCC-----cceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEE--eCCCCCcceEEEccCCCc
Confidence 21000 000001234577899999995 689999998 79999999997655443 345778999999997899
Q ss_pred EEEEeCCC-CEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCC-CcEEEEECCC-
Q psy8782 282 LYISDPES-HQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSAD-NILYFADGTN- 358 (482)
Q Consensus 282 lyVaD~~n-~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~-G~lyvaD~~n- 358 (482)
||++|..+ ++|++++ .+|....++. ...|..|.|||+|++ +.|||+|..+
T Consensus 510 ly~td~~~~~~I~~~~-------~dG~~~~~l~--------------------~~~l~~PnGlavd~~~~~LY~aD~~~~ 562 (699)
T 1n7d_A 510 MYWTDWGTPAKIKKGG-------LNGVDIYSLV--------------------TENIQWPNGITLDLLSGRLYWVDSKLH 562 (699)
T ss_dssp CEECCCSSSCCEEBCC-------SSSCCCCEES--------------------CSSCSSCCCEEECTTTCCEEEEETTTT
T ss_pred EEEcccCCCCeEEEEe-------CCCCCeeEEE--------------------eCCCCCccEEEEeccCCEEEEEecCCC
Confidence 99999876 8999998 3554322221 123789999999975 7899999976
Q ss_pred -EEEEcCCCcE
Q psy8782 359 -IRMVDRDGIV 368 (482)
Q Consensus 359 -Ir~i~~~G~i 368 (482)
|++++.+|..
T Consensus 563 ~I~~~d~dG~~ 573 (699)
T 1n7d_A 563 SISSIDVNGGN 573 (699)
T ss_dssp EEEEECSSSSC
T ss_pred eEEEEccCCCc
Confidence 9999988753
No 47
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=99.68 E-value=7.7e-15 Score=147.91 Aligned_cols=257 Identities=19% Similarity=0.211 Sum_probs=146.7
Q ss_pred ccCCCceEEEEcCCCcEEEEeC-CcEEEEcCCCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCC
Q psy8782 117 QRLLAPVALATAPDGSLFVGDF-NLIRRIMTDGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKP 195 (482)
Q Consensus 117 ~~l~~P~glavd~~G~lyvaD~-~~Irki~~~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~ 195 (482)
..|..|++|+++++|+|||+|. ++|++++ +|+...++....
T Consensus 28 ~~l~~P~~ia~~pdG~l~V~e~~g~I~~i~-~g~~~~~~~~~v------------------------------------- 69 (352)
T 2ism_A 28 GGLEVPWALAFLPDGGMLIAERPGRIRLFR-EGRLSTYAELSV------------------------------------- 69 (352)
T ss_dssp CCCSCEEEEEECTTSCEEEEETTTEEEEEE-TTEEEEEEECCC-------------------------------------
T ss_pred CCCCCceEEEEcCCCeEEEEeCCCeEEEEE-CCCccEeecceE-------------------------------------
Confidence 3588999999999999999999 8999998 787655543210
Q ss_pred CeEEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcCC----CCEEEEEC-------CcEEEEcCCCe----EEEEE
Q psy8782 196 RIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPD----GSLFVGDF-------NLIRRIMTDGT----VRTVV 260 (482)
Q Consensus 196 ~~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~----G~lyv~D~-------~~I~~i~~~G~----v~~~~ 260 (482)
....+..|.+|+++|+ +.|||++. ++|.+++.++. ...++
T Consensus 70 -------------------------~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~ 124 (352)
T 2ism_A 70 -------------------------YHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVL 124 (352)
T ss_dssp -------------------------CCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEE
T ss_pred -------------------------eecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEE
Confidence 0112357899999997 79999997 68999986642 22333
Q ss_pred e-ec--cCCCCceeeEEEeCCCCeEEEEeCC-------------CCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCC
Q psy8782 261 R-LN--VTRVAYRYHIAYSPLDGTLYISDPE-------------SHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEA 324 (482)
Q Consensus 261 g-~~--~~~~~~p~giavd~~~g~lyVaD~~-------------n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~ 324 (482)
. .. ......|.+|+++| +|.|||++.. .++|+|++ ++|.+- .++ .
T Consensus 125 ~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~-------~dG~~p--~~n---------p 185 (352)
T 2ism_A 125 DGIPARPHGLHSGGRIAFGP-DGMLYVTTGEVYERELAQDLASLGGKILRLT-------PEGEPA--PGN---------P 185 (352)
T ss_dssp EEECCCTTCCCCCCCEEECT-TSCEEEECCCTTCGGGGGCTTCSSSEEEEEC-------TTSSBC--TTC---------T
T ss_pred EeCCCCCCCCcCCceEEECC-CCCEEEEECCCCCCccccCCCCCceEEEEEc-------CCCCCC--CCC---------c
Confidence 2 22 23456789999999 8999999742 36899998 454310 010 0
Q ss_pred ccCCC---ccccccccCCcceEEEeC-CCcEEEEECCC--EEEEcCCCcEEEEEcCCCCCCCCCcCCCCceEEeccccce
Q psy8782 325 HCGDG---APARDAKLAYPKGVAVSA-DNILYFADGTN--IRMVDRDGIVTTVIGNHMHKSHWKPIPCEGTLNIEEVSET 398 (482)
Q Consensus 325 ~~gdg---~~a~~a~l~~P~giavd~-~G~lyvaD~~n--Ir~i~~~G~i~ti~G~~~~~~~~~~~~~dg~l~v~~~~~~ 398 (482)
+.++. ......-+.+|.||++|+ +|.||++|.+. ++. .+.-+|..+. .+.... | |. |.+.-...+....
T Consensus 186 f~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~-~~~dei~~i~-~G~nyG-w-p~-~~g~~~~~~~~~p 260 (352)
T 2ism_A 186 FLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQG-YGHDEVNLIV-PGGNYG-W-PR-VVGRGNDPRYRDP 260 (352)
T ss_dssp TTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC-------CCCEEEEEC-TTCBCC-T-TT-CCSCCCCTTSCCC
T ss_pred ccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCC-CCCeEEEEec-cCCcCC-C-Cc-ccCCCCCCCCcCC
Confidence 11110 011122367899999999 89999999875 332 1122343332 221100 0 00 0000000000000
Q ss_pred eEEe---ecCcceEEec------ccCCCceEEEeeceeeee---e-eeeeecccceeeeeeEEcCCCcEEEEeCCC
Q psy8782 399 MRDI---RHTTGWACYG------TGDNDHMTLIHCYGVMQD---V-VTSVFNNSHFLDVHFSHQDQDLFYFVKELP 461 (482)
Q Consensus 399 ~~~l---~~p~giav~~------~g~n~~~~~~~~~g~~~~---~-~~~~~n~~~~~~~~i~~~~~g~~yi~d~~n 461 (482)
+..+ ..|.|+++.. +-...+|..+...+.... . ..... .....++.++++++|.|||++...
T Consensus 261 ~~~~~~~~ap~G~~~~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~-~~~~rp~~v~~~pdG~lyv~~~~~ 335 (352)
T 2ism_A 261 LYFWPQGFPPGNLAFFRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL-SGFGRLREVQVGPDGALYVTTSNR 335 (352)
T ss_dssp SEECTTCCCEEEEEEETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE-ESSCCEEEEEECTTSCEEEEECST
T ss_pred eEecCCCCCCcceEEECCEEEEEECCCCEEEEEEECCCCcceeecchheec-ccCCCeeEEEECCCCcEEEEEeCC
Confidence 0001 1255555531 114456666654433110 0 11111 234567899999999999998753
No 48
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.68 E-value=1.3e-14 Score=145.33 Aligned_cols=217 Identities=14% Similarity=0.148 Sum_probs=132.9
Q ss_pred eecCCccEEEEcCCCCEEEEEC-------CcEEEEcC-CCeEEEEEeecc---CCCCceeeEEEeCCCCeEEEEeC---C
Q psy8782 223 QRLLAPVALATAPDGSLFVGDF-------NLIRRIMT-DGTVRTVVRLNV---TRVAYRYHIAYSPLDGTLYISDP---E 288 (482)
Q Consensus 223 ~~l~~P~giavd~~G~lyv~D~-------~~I~~i~~-~G~v~~~~g~~~---~~~~~p~giavd~~~g~lyVaD~---~ 288 (482)
..|..|.+|++|++|.|||+|. .+|.++++ +|++...+.... ....+|.+|++++.++.+||+|. .
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~ 143 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD 143 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence 4677999999999999999995 48999996 488766665421 22357899999986789999999 8
Q ss_pred CCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccc----ccc----ccCCcceEEEeCCC-cEEEEECCC-
Q psy8782 289 SHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPA----RDA----KLAYPKGVAVSADN-ILYFADGTN- 358 (482)
Q Consensus 289 n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a----~~a----~l~~P~giavd~~G-~lyvaD~~n- 358 (482)
.+.|++++. .+|....+......+.+....+.-+|... ... ....|.||+++++| .||+++...
T Consensus 144 ~~~i~v~d~------~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~ 217 (343)
T 2qe8_A 144 KAALIRVDL------QTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHST 217 (343)
T ss_dssp GCEEEEEET------TTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCS
T ss_pred CCeEEEEEC------CCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCC
Confidence 899999995 34665554421001000000011111000 000 12468999999999 599999765
Q ss_pred -EEEEcC----CCcEE--------EEEcCCCCCCCCCcCCCCceEEeccccc-eeEEeecCcceEEecccCCCceEEEee
Q psy8782 359 -IRMVDR----DGIVT--------TVIGNHMHKSHWKPIPCEGTLNIEEVSE-TMRDIRHTTGWACYGTGDNDHMTLIHC 424 (482)
Q Consensus 359 -Ir~i~~----~G~i~--------ti~G~~~~~~~~~~~~~dg~l~v~~~~~-~~~~l~~p~giav~~~g~n~~~~~~~~ 424 (482)
+.+++. ++.+. ...|... .+.+.+++.+|.||+++... +|..++ +
T Consensus 218 ~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g-~pdgia~d~~G~l~va~~~~~~V~~~d--------------------~ 276 (343)
T 2qe8_A 218 SMYRIKSADLSNLQLTDAELGSKIERYSEKP-ICDGISIDKDHNIYVGDLAHSAIGVIT--------------------S 276 (343)
T ss_dssp EEEEEEHHHHTCTTCCHHHHHTTCEEEEECC-SCSCEEECTTCCEEEEEGGGTEEEEEE--------------------T
T ss_pred eEEEEEHHHhcCCCCChhhhhcceEecccCC-CCceEEECCCCCEEEEccCCCeEEEEE--------------------C
Confidence 777753 22210 1112211 23445666677777766432 344333 3
Q ss_pred -ceeeeeeeeeeecccceeeeeeEEcCCCcEEEEeCCCCeeEEeec
Q psy8782 425 -YGVMQDVVTSVFNNSHFLDVHFSHQDQDLFYFVKELPQKIRDDLD 469 (482)
Q Consensus 425 -~g~~~~~~~~~~n~~~~~~~~i~~~~~g~~yi~d~~n~rIrk~~~ 469 (482)
.|.... +. ....+.+|.+++++++|.+||++...+|+..+..
T Consensus 277 ~~G~~~~-~~--~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~~ 319 (343)
T 2qe8_A 277 ADRAYKL-LV--TDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLNA 319 (343)
T ss_dssp TTTEEEE-EE--ECGGGSCEEEEEECTTSCEEEEECCGGGSGGGBT
T ss_pred CCCCEEE-EE--ECCceecCCeeEECCCCcEEEEeCcccccccccc
Confidence 222111 11 1123456788999999999999998888765443
No 49
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.62 E-value=1.9e-13 Score=136.76 Aligned_cols=242 Identities=12% Similarity=0.075 Sum_probs=154.6
Q ss_pred cCCCeEEecCCceEEEee--CCC--eEEEEeccCccCCCCCcCCCCCCcCcccCCCceEEEEcCCCcEEEEeC-------
Q psy8782 70 FHEGILQKGDGSNIYLKN--KPR--IIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF------- 138 (482)
Q Consensus 70 ~~~gil~~gdG~~~~~~~--~~~--~i~tv~G~G~~~~~~~~~~~G~~~~~~~l~~P~glavd~~G~lyvaD~------- 138 (482)
.+.++....+|+.+.... ..+ .|..+. +|...++.. .. ......|..|.+|++|++|+|||+|.
T Consensus 18 ~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~-~g~~~~~p~--~~--~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~ 92 (343)
T 2qe8_A 18 APGNITLTPDGRLFLSLHQFYQPEMQVAELT-QDGLIPFPP--QS--GNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSV 92 (343)
T ss_dssp CEEEEEECTTSCEEEEECGGGCCSCSEEEEE-TTEEEESCC--CC--SSCCCCCSCEEEEEECSSSEEEEEECHHHHTSC
T ss_pred CcceEEECCCCCEEEEeCCCCCCceEEEEEC-CCCeecCCC--cc--cCcccceeEeeEEEEcCCCcEEEEcCCCCcCCC
Confidence 677888777876544322 112 455554 444332221 11 11245789999999999999999995
Q ss_pred CcEEEEcCC-CeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcC----CCeEEEEc-CCCcccc-CC
Q psy8782 139 NLIRRIMTD-GTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNK----PRIIKTTL-GDGHQRP-LD 211 (482)
Q Consensus 139 ~~Irki~~~-G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~----~~~i~~~~-g~G~~~~-~~ 211 (482)
++|.+++++ |++...+....... .....|++++++++++.+|++|. ...+..+. .+|+... ..
T Consensus 93 ~~i~~~d~~tg~~~~~~~~~~~~~----------~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~ 162 (343)
T 2qe8_A 93 PKLVAWDTLNNQLSRVIYLPPPIT----------LSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQ 162 (343)
T ss_dssp CEEEEEETTTTEEEEEEECCTTTS----------CTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECT
T ss_pred CeEEEEECCCCeEEEEEECChhhc----------ccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEec
Confidence 589999974 88655443321100 01135789999988789999986 23444333 2333211 10
Q ss_pred Cc-CCC--CC-CC-ceee-------------cCCccEEEEcCCC-CEEEEEC--CcEEEEcC----CCeEE--------E
Q psy8782 212 CK-DCN--GE-AG-PKQR-------------LLAPVALATAPDG-SLFVGDF--NLIRRIMT----DGTVR--------T 258 (482)
Q Consensus 212 ~~-~~~--g~-~~-~~~~-------------l~~P~giavd~~G-~lyv~D~--~~I~~i~~----~G~v~--------~ 258 (482)
.. ... .. .. .... ...|.+|+++++| .||+++. ++|++++. ++.+. .
T Consensus 163 ~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 242 (343)
T 2qe8_A 163 GYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIE 242 (343)
T ss_dssp TCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCE
T ss_pred CCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceE
Confidence 00 000 00 00 0001 1468999999999 5999998 68999873 22210 1
Q ss_pred EEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCC-CCcEEEEecCCcccCCCCCCccCCCcccccccc
Q psy8782 259 VVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAP-DYNVEPAVGSGERCLPGDEAHCGDGAPARDAKL 337 (482)
Q Consensus 259 ~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~-~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l 337 (482)
..+ ....|.||++|+ +|+|||++..+++|.+++ + +|++.+++.. ..+
T Consensus 243 ~~g----~~g~pdgia~d~-~G~l~va~~~~~~V~~~d-------~~~G~~~~~~~~--------------------~~~ 290 (343)
T 2qe8_A 243 RYS----EKPICDGISIDK-DHNIYVGDLAHSAIGVIT-------SADRAYKLLVTD--------------------EKL 290 (343)
T ss_dssp EEE----ECCSCSCEEECT-TCCEEEEEGGGTEEEEEE-------TTTTEEEEEEEC--------------------GGG
T ss_pred ecc----cCCCCceEEECC-CCCEEEEccCCCeEEEEE-------CCCCCEEEEEEC--------------------Cce
Confidence 112 123799999999 899999999999999999 5 7877766531 137
Q ss_pred CCcceEEEeCCCcEEEEECCC
Q psy8782 338 AYPKGVAVSADNILYFADGTN 358 (482)
Q Consensus 338 ~~P~giavd~~G~lyvaD~~n 358 (482)
..|.+|+++++|.|||++...
T Consensus 291 ~~p~~va~~~~g~l~v~~~~~ 311 (343)
T 2qe8_A 291 SWTDSFNFGSDGYLYFDCNQL 311 (343)
T ss_dssp SCEEEEEECTTSCEEEEECCG
T ss_pred ecCCeeEECCCCcEEEEeCcc
Confidence 789999999999999999754
No 50
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=99.56 E-value=4.7e-13 Score=131.65 Aligned_cols=191 Identities=16% Similarity=0.159 Sum_probs=130.0
Q ss_pred CCccEEEEcCCCCEEEEEC--CcEEEEcCCCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCC--CEEEEEecCCcc
Q psy8782 226 LAPVALATAPDGSLFVGDF--NLIRRIMTDGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPES--HQILRVKNAMDF 301 (482)
Q Consensus 226 ~~P~giavd~~G~lyv~D~--~~I~~i~~~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n--~~I~~~~~~~~~ 301 (482)
..|.+++++++|+|||+|. ++|++++++|++...+... ..|.+|++++ +|+|||+|..+ .+|++++.
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~----~~p~gia~~~-dG~l~vad~~~~~~~v~~~d~---- 102 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVE----GKVSGLAFTS-NGDLVATGWNADSIPVVSLVK---- 102 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECS----SEEEEEEECT-TSCEEEEEECTTSCEEEEEEC----
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCceEEEEeCC----CCceeEEEcC-CCcEEEEeccCCcceEEEEcC----
Confidence 6899999999999999997 7999999999887776532 4799999999 88999999764 45888874
Q ss_pred CCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEECCC--EEEEcCCC---cEEEEEcCCC
Q psy8782 302 SAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADGTN--IRMVDRDG---IVTTVIGNHM 376 (482)
Q Consensus 302 ~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~~n--Ir~i~~~G---~i~ti~G~~~ 376 (482)
.+|.++.++... ....|.|+++.+++.+|++|..+ |.++++++ .+....+...
T Consensus 103 --~~g~~~~~~~~~--------------------~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~ 160 (306)
T 2p4o_A 103 --SDGTVETLLTLP--------------------DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLA 160 (306)
T ss_dssp --TTSCEEEEEECT--------------------TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGS
T ss_pred --CCCeEEEEEeCC--------------------CccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccc
Confidence 578877766421 13458899988888999999744 99999864 3332222110
Q ss_pred --------CCCCCCcCCCCc-eEEeccc-cceeEEeecCcceEEecccCCCceEEEeeceeeeeeeeeeecccceeeeee
Q psy8782 377 --------HKSHWKPIPCEG-TLNIEEV-SETMRDIRHTTGWACYGTGDNDHMTLIHCYGVMQDVVTSVFNNSHFLDVHF 446 (482)
Q Consensus 377 --------~~~~~~~~~~dg-~l~v~~~-~~~~~~l~~p~giav~~~g~n~~~~~~~~~g~~~~~~~~~~n~~~~~~~~i 446 (482)
..+++ +++|+ .||+.+. .+++.++.... ++.-...+.+ . .+..|.+|
T Consensus 161 ~~~~~~~~~~png--is~dg~~lyv~d~~~~~I~~~~~~~------~g~~~~~~~~----------~-----~~~~P~gi 217 (306)
T 2p4o_A 161 RSNSESVFPAANG--LKRFGNFLYVSNTEKMLLLRIPVDS------TDKPGEPEIF----------V-----EQTNIDDF 217 (306)
T ss_dssp CSSTTCCSCSEEE--EEEETTEEEEEETTTTEEEEEEBCT------TSCBCCCEEE----------E-----ESCCCSSE
T ss_pred cccccCCCCcCCC--cCcCCCEEEEEeCCCCEEEEEEeCC------CCCCCccEEE----------e-----ccCCCCCe
Confidence 11111 23444 5666554 33555554311 0000000110 0 11357789
Q ss_pred EEcCCCcEEEEeCCCCeeEEeecc
Q psy8782 447 SHQDQDLFYFVKELPQKIRDDLDE 470 (482)
Q Consensus 447 ~~~~~g~~yi~d~~n~rIrk~~~~ 470 (482)
+++.+|.+|+++..+++|+++-.+
T Consensus 218 ~vd~dG~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 218 AFDVEGNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp EEBTTCCEEEECBTTCCEEEECTT
T ss_pred EECCCCCEEEEeCCCCeEEEECCC
Confidence 999999999999999999997644
No 51
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.55 E-value=2.9e-12 Score=124.60 Aligned_cols=227 Identities=17% Similarity=0.212 Sum_probs=153.1
Q ss_pred cccCCCeEEecCCc-eEEEeeCCCeEEEEeccCccCCCCCcCCCCCCcCcccCCCceEEEEcCCCcEEEEeC--CcEEEE
Q psy8782 68 YNFHEGILQKGDGS-NIYLKNKPRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF--NLIRRI 144 (482)
Q Consensus 68 ~~~~~gil~~gdG~-~~~~~~~~~~i~tv~G~G~~~~~~~~~~~G~~~~~~~l~~P~glavd~~G~lyvaD~--~~Irki 144 (482)
+..++++++..+|+ .+++......|..+.-.+....+ ......|.+|+++++|.||+++. ++|.++
T Consensus 27 ~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~~~~~-----------~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~ 95 (296)
T 3e5z_A 27 FTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQLSPE-----------MHPSHHQNGHCLNKQGHLIACSHGLRRLERQ 95 (296)
T ss_dssp CSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSCEEEE-----------ESSCSSEEEEEECTTCCEEEEETTTTEEEEE
T ss_pred CccccCCeEeCCCCEEEEEeCCCCEEEEEECCCCeEEE-----------ECCCCCcceeeECCCCcEEEEecCCCeEEEE
Confidence 34456777777776 45555555566655433221110 11234699999999999999997 799999
Q ss_pred cC-CCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcC------------------CCeEEEEcCCC
Q psy8782 145 MT-DGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNK------------------PRIIKTTLGDG 205 (482)
Q Consensus 145 ~~-~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~------------------~~~i~~~~g~G 205 (482)
++ +|++..+...... .....|++++++++| ++|++|. .+.+..+...|
T Consensus 96 d~~~g~~~~~~~~~~~------------~~~~~~~~i~~d~~G-~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g 162 (296)
T 3e5z_A 96 REPGGEWESIADSFEG------------KKLNSPNDVCLAPDG-SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDG 162 (296)
T ss_dssp CSTTCCEEEEECEETT------------EECCCCCCEEECTTS-CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTS
T ss_pred cCCCCcEEEEeeccCC------------CCCCCCCCEEECCCC-CEEEECCccccccccccccccccCCCcEEEEECCCC
Confidence 98 7888776532110 113468889999877 6888753 22444444334
Q ss_pred ccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC--CcEEEEcC--CCeE---EEEEeeccCCCCceeeEEEeCC
Q psy8782 206 HQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF--NLIRRIMT--DGTV---RTVVRLNVTRVAYRYHIAYSPL 278 (482)
Q Consensus 206 ~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~--~~I~~i~~--~G~v---~~~~g~~~~~~~~p~giavd~~ 278 (482)
+... ....+..|.+++++++|.+++++. ++|++++. +|++ ..++ ......|.+|++++
T Consensus 163 ~~~~-----------~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~---~~~~~~p~~i~~d~- 227 (296)
T 3e5z_A 163 TLSA-----------PIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF---TVEPGKTDGLRVDA- 227 (296)
T ss_dssp CEEE-----------EECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE---CCSSSCCCSEEEBT-
T ss_pred CEEE-----------eecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe---eCCCCCCCeEEECC-
Confidence 3221 224567899999999998889998 78999885 5776 3343 22456799999999
Q ss_pred CCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEe-CCC-cEEEEEC
Q psy8782 279 DGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVS-ADN-ILYFADG 356 (482)
Q Consensus 279 ~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd-~~G-~lyvaD~ 356 (482)
+|+|||+. +++|++++ ++|........ . -. |..++++ +++ .|||+..
T Consensus 228 ~G~l~v~~--~~~v~~~~-------~~g~~~~~~~~-------------------~--~~-~~~~~f~~~d~~~L~v~t~ 276 (296)
T 3e5z_A 228 GGLIWASA--GDGVHVLT-------PDGDELGRVLT-------------------P--QT-TSNLCFGGPEGRTLYMTVS 276 (296)
T ss_dssp TSCEEEEE--TTEEEEEC-------TTSCEEEEEEC-------------------S--SC-CCEEEEESTTSCEEEEEET
T ss_pred CCCEEEEc--CCeEEEEC-------CCCCEEEEEEC-------------------C--CC-ceeEEEECCCCCEEEEEcC
Confidence 89999999 78999998 56664332211 0 12 7889995 565 5999988
Q ss_pred CCEEEEcC
Q psy8782 357 TNIRMVDR 364 (482)
Q Consensus 357 ~nIr~i~~ 364 (482)
..+.++++
T Consensus 277 ~~l~~~~~ 284 (296)
T 3e5z_A 277 TEFWSIET 284 (296)
T ss_dssp TEEEEEEC
T ss_pred CeEEEEEc
Confidence 77877775
No 52
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=99.54 E-value=2.9e-13 Score=136.38 Aligned_cols=262 Identities=15% Similarity=0.173 Sum_probs=147.9
Q ss_pred cCCCceEEEEcCCCc-EEEEeC-CcEEEEcCCCeEEEE-EeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcC
Q psy8782 118 RLLAPVALATAPDGS-LFVGDF-NLIRRIMTDGTVRTV-VRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNK 194 (482)
Q Consensus 118 ~l~~P~glavd~~G~-lyvaD~-~~Irki~~~G~v~ti-~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~ 194 (482)
.|..|++|+++++|+ |||++. .+|++++++|.+.+. .+....
T Consensus 16 ~l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v----------------------------------- 60 (353)
T 2g8s_A 16 KLDHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDV----------------------------------- 60 (353)
T ss_dssp EESSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCC-----------------------------------
T ss_pred CCCCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCccc-----------------------------------
Confidence 578999999999999 999999 899999888875432 111000
Q ss_pred CCeEEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcC----CCCEEEEEC---------CcEEEEcCCC---eE--
Q psy8782 195 PRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAP----DGSLFVGDF---------NLIRRIMTDG---TV-- 256 (482)
Q Consensus 195 ~~~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~----~G~lyv~D~---------~~I~~i~~~G---~v-- 256 (482)
.......|.+|+++| ++.|||++. ++|.|++.++ ++
T Consensus 61 --------------------------~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~ 114 (353)
T 2g8s_A 61 --------------------------WAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTD 114 (353)
T ss_dssp --------------------------CCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEE
T ss_pred --------------------------ccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCc
Confidence 001123577899998 588999975 3688876432 22
Q ss_pred -EEEEee-c--cCCCCceeeEEEeCCCCeEEEEeCC-------------CCEEEEEecCCccCCCCCcEEEEecCCcccC
Q psy8782 257 -RTVVRL-N--VTRVAYRYHIAYSPLDGTLYISDPE-------------SHQILRVKNAMDFSAPDYNVEPAVGSGERCL 319 (482)
Q Consensus 257 -~~~~g~-~--~~~~~~p~giavd~~~g~lyVaD~~-------------n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~ 319 (482)
..++.. . ......|.+|+++| +|.|||+... .++|+|++ ++|.+- .++
T Consensus 115 ~~~i~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~-------~dG~~p--~~n----- 179 (353)
T 2g8s_A 115 FRTVFRQMPKLSTGNHFGGRLVFDG-KGYLFIALGENNQRPTAQDLDKLQGKLVRLT-------DQGEIP--DDN----- 179 (353)
T ss_dssp EEEEEECSSCCBSSSCCCCCEEECS-SSEEEEEECCTTCGGGGGCTTSCTTEEEEEE-------TTSCCC--TTC-----
T ss_pred eEEEEEECCCCCCCcccCccEEECC-CCcEEEEECCCCCCCccCCCCCCCeEEEEEC-------CCCCCC--CCC-----
Confidence 223321 1 12344688999999 8999999633 36899999 454310 111
Q ss_pred CCCCCccCCC---ccccccccCCcceEEEeC-CCcEEEEECCC-----EEEEcCCCcEEEEEcCCCCC----CCCCcCC-
Q psy8782 320 PGDEAHCGDG---APARDAKLAYPKGVAVSA-DNILYFADGTN-----IRMVDRDGIVTTVIGNHMHK----SHWKPIP- 385 (482)
Q Consensus 320 ~g~~~~~gdg---~~a~~a~l~~P~giavd~-~G~lyvaD~~n-----Ir~i~~~G~i~ti~G~~~~~----~~~~~~~- 385 (482)
.+.++. ..-...-+.+|.||++|+ +|.||++|.+. |.++.+.+.. |-.... .....++
T Consensus 180 ----pf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~ny----Gwp~~~~~~~~~~~~~~~ 251 (353)
T 2g8s_A 180 ----PFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNY----GWPLATWGINYSGFKIPE 251 (353)
T ss_dssp ----TTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBC----CTTTBCSSBCTTSSCCTT
T ss_pred ----CCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcC----CCCCccCCCCCCCCccCc
Confidence 111111 011123378899999999 89999999863 4444332210 100000 0000000
Q ss_pred -----CCceEEeccccceeEEe---ecCcceEEec--------------ccCCCceEEEeeceeeeeeeeeeecccceee
Q psy8782 386 -----CEGTLNIEEVSETMRDI---RHTTGWACYG--------------TGDNDHMTLIHCYGVMQDVVTSVFNNSHFLD 443 (482)
Q Consensus 386 -----~dg~l~v~~~~~~~~~l---~~p~giav~~--------------~g~n~~~~~~~~~g~~~~~~~~~~n~~~~~~ 443 (482)
+.+. ...+..+ ..|.|+++.. +-...+|..+...+................+
T Consensus 252 ~~~~~~~~~------~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp 325 (353)
T 2g8s_A 252 AKGEIVAGT------EQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRI 325 (353)
T ss_dssp CCBSSCTTS------CCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCE
T ss_pred ccCCCCCCc------cCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCce
Confidence 0000 0000001 1255555542 1245566666554311110111112233468
Q ss_pred eeeEEcCCCcEEEE-eCCCCeeEEeec
Q psy8782 444 VHFSHQDQDLFYFV-KELPQKIRDDLD 469 (482)
Q Consensus 444 ~~i~~~~~g~~yi~-d~~n~rIrk~~~ 469 (482)
++++++++|.|||+ |..+.||.|+..
T Consensus 326 ~~v~~~pdG~lyv~td~~~g~I~ri~~ 352 (353)
T 2g8s_A 326 RDVRTGPDGYLYVLTDESSGELLKVSP 352 (353)
T ss_dssp EEEEECTTSCEEEEECSTTEEEEEEEC
T ss_pred eEEEECCCCcEEEEEeCCCCEEEEEeC
Confidence 89999999999997 667899998753
No 53
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.54 E-value=1.3e-12 Score=127.33 Aligned_cols=194 Identities=13% Similarity=0.130 Sum_probs=135.3
Q ss_pred CCceEEEEcCC-CcEEEEeC-CcEEEEcCCCeEEEE-EeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCC-
Q psy8782 120 LAPVALATAPD-GSLFVGDF-NLIRRIMTDGTVRTV-VRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKP- 195 (482)
Q Consensus 120 ~~P~glavd~~-G~lyvaD~-~~Irki~~~G~v~ti-~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~- 195 (482)
..|.+++++++ |+|||++. ++|.+++++|++..+ ..... + .....|.++++++++ ++|+++..
T Consensus 71 ~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~g~~~~~~~~~~~-~-----------~~~~~~~~i~~d~~g-~l~v~~~~~ 137 (314)
T 1pjx_A 71 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSE-G-----------RRMQGCNDCAFDYEG-NLWITAPAG 137 (314)
T ss_dssp CCEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTT-S-----------CBCBCCCEEEECTTS-CEEEEECBC
T ss_pred CCCceEEEecCCCcEEEEECCCCEEEEeCCCCEEEEEeccCC-C-----------ccccCCcCEEECCCC-CEEEEecCc
Confidence 57999999999 99999998 799999988887665 32110 0 012458899999876 78888753
Q ss_pred ---------------CeEEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEc----CCC-CEEEEEC--CcEEEEcC-
Q psy8782 196 ---------------RIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATA----PDG-SLFVGDF--NLIRRIMT- 252 (482)
Q Consensus 196 ---------------~~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd----~~G-~lyv~D~--~~I~~i~~- 252 (482)
..+..+...++... ....+..|.+++++ ++| .||+++. ++|++++.
T Consensus 138 ~~~~~~~~~~~~~~~~~l~~~~~~g~~~~-----------~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~ 206 (314)
T 1pjx_A 138 EVAPADYTRSMQEKFGSIYCFTTDGQMIQ-----------VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIK 206 (314)
T ss_dssp BCTTSCCCBTTSSSCEEEEEECTTSCEEE-----------EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEE
T ss_pred ccccccccccccCCCCeEEEECCCCCEEE-----------eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECC
Confidence 23444443333221 22446679999999 998 6999997 78999984
Q ss_pred -CCeEEE---EEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCC
Q psy8782 253 -DGTVRT---VVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGD 328 (482)
Q Consensus 253 -~G~v~~---~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gd 328 (482)
+|++.. +.......+..|.+|++++ +|+|||++..+++|++++.. +|.......
T Consensus 207 ~~g~~~~~~~~~~~~~~~~~~p~~i~~d~-~G~l~v~~~~~~~i~~~d~~------~g~~~~~~~--------------- 264 (314)
T 1pjx_A 207 GPAKIENKKVWGHIPGTHEGGADGMDFDE-DNNLLVANWGSSHIEVFGPD------GGQPKMRIR--------------- 264 (314)
T ss_dssp ETTEEEEEEEEEECCCCSSCEEEEEEEBT-TCCEEEEEETTTEEEEECTT------CBSCSEEEE---------------
T ss_pred CCCccccceEEEECCCCCCCCCCceEECC-CCCEEEEEcCCCEEEEEcCC------CCcEeEEEe---------------
Confidence 465432 2211111126799999999 89999999889999999841 144222111
Q ss_pred CccccccccCCcceEEEeCCCc-EEEEECC--CEEEEcCC
Q psy8782 329 GAPARDAKLAYPKGVAVSADNI-LYFADGT--NIRMVDRD 365 (482)
Q Consensus 329 g~~a~~a~l~~P~giavd~~G~-lyvaD~~--nIr~i~~~ 365 (482)
.....|.+++++++|+ |||++.. .|.+++++
T Consensus 265 ------~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~ 298 (314)
T 1pjx_A 265 ------CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp ------CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred ------CCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence 0125689999999998 9999987 38888754
No 54
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.54 E-value=1.4e-12 Score=128.70 Aligned_cols=208 Identities=17% Similarity=0.204 Sum_probs=139.0
Q ss_pred cCCCceEEEEcCCCcEEEEeC--CcEEEEcCC-CeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcC
Q psy8782 118 RLLAPVALATAPDGSLFVGDF--NLIRRIMTD-GTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNK 194 (482)
Q Consensus 118 ~l~~P~glavd~~G~lyvaD~--~~Irki~~~-G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~ 194 (482)
.+..|.+++++++|+||+++. +.|++++++ +++..+.... ...|.++++++++ ++|++..
T Consensus 43 ~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~----------------~~~~~~i~~~~dg-~l~v~~~ 105 (333)
T 2dg1_A 43 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSH----------------KANPAAIKIHKDG-RLFVCYL 105 (333)
T ss_dssp SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECS----------------SSSEEEEEECTTS-CEEEEEC
T ss_pred cCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCC----------------CCCcceEEECCCC-cEEEEeC
Confidence 345789999999999999987 789999986 5665544211 1347888888876 6777764
Q ss_pred C-----CeEEEEcCCCcc-ccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC--------CcEEEEcCCC-eEEEE
Q psy8782 195 P-----RIIKTTLGDGHQ-RPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF--------NLIRRIMTDG-TVRTV 259 (482)
Q Consensus 195 ~-----~~i~~~~g~G~~-~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~--------~~I~~i~~~G-~v~~~ 259 (482)
. +.+..+...+.. ..... .......|.+++++++|++|+++. ..|+++++++ ++..+
T Consensus 106 ~~~~~~~~i~~~d~~~~~~~~~~~--------~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~ 177 (333)
T 2dg1_A 106 GDFKSTGGIFAATENGDNLQDIIE--------DLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPI 177 (333)
T ss_dssp TTSSSCCEEEEECTTSCSCEEEEC--------SSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEE
T ss_pred CCCCCCceEEEEeCCCCEEEEEEc--------cCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEe
Confidence 3 355555433322 10000 001224789999999999999987 4799999875 55554
Q ss_pred EeeccCCCCceeeEEEeCCCC-eEEEEeCCCCEEEEEecCCccCCCCCc-EEEEecCCcccCCCCCCccCCCcccccccc
Q psy8782 260 VRLNVTRVAYRYHIAYSPLDG-TLYISDPESHQILRVKNAMDFSAPDYN-VEPAVGSGERCLPGDEAHCGDGAPARDAKL 337 (482)
Q Consensus 260 ~g~~~~~~~~p~giavd~~~g-~lyVaD~~n~~I~~~~~~~~~~~~~g~-~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l 337 (482)
.. .+..|.+++++| +| .||+++..+++|++++.. .+|. +..+..... .... ..
T Consensus 178 ~~----~~~~~~~i~~~~-dg~~l~v~~~~~~~i~~~d~~-----~~g~~~~~~~~~~~--------~~~~-------~~ 232 (333)
T 2dg1_A 178 IQ----NISVANGIALST-DEKVLWVTETTANRLHRIALE-----DDGVTIQPFGATIP--------YYFT-------GH 232 (333)
T ss_dssp EE----EESSEEEEEECT-TSSEEEEEEGGGTEEEEEEEC-----TTSSSEEEEEEEEE--------EECC-------SS
T ss_pred ec----CCCcccceEECC-CCCEEEEEeCCCCeEEEEEec-----CCCcCcccccceEE--------EecC-------CC
Confidence 32 245689999999 55 699999989999999852 1332 222110000 0000 02
Q ss_pred CCcceEEEeCCCcEEEEECC-C-EEEEcCCCcEEEEEcCC
Q psy8782 338 AYPKGVAVSADNILYFADGT-N-IRMVDRDGIVTTVIGNH 375 (482)
Q Consensus 338 ~~P~giavd~~G~lyvaD~~-n-Ir~i~~~G~i~ti~G~~ 375 (482)
..|.+|++|++|+|||++.. + |++++++|.....+..+
T Consensus 233 ~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g~~~~~~~~~ 272 (333)
T 2dg1_A 233 EGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYPIGQILIP 272 (333)
T ss_dssp SEEEEEEEBTTCCEEEEEETTTEEEEECTTSCEEEEEECT
T ss_pred CCCCceEECCCCCEEEEEcCCCEEEEECCCCCEEEEEEcC
Confidence 46899999999999999854 3 99999988865555433
No 55
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.52 E-value=2.1e-12 Score=128.29 Aligned_cols=201 Identities=14% Similarity=0.108 Sum_probs=139.9
Q ss_pred CCCceEEEEcCCCcEEEEe-C-CcEEEEcCC-CeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcC-
Q psy8782 119 LLAPVALATAPDGSLFVGD-F-NLIRRIMTD-GTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNK- 194 (482)
Q Consensus 119 l~~P~glavd~~G~lyvaD-~-~~Irki~~~-G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~- 194 (482)
+..|.+|+++++|.|||++ . +.|.++++. +++...+..+... .....|.++++ +++.+|+++.
T Consensus 83 ~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~-----------~~~~~p~~i~~--~~~~lyv~~~~ 149 (328)
T 3dsm_A 83 FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMD-----------MESGSTEQMVQ--YGKYVYVNCWS 149 (328)
T ss_dssp CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCC-----------TTTCBCCCEEE--ETTEEEEEECT
T ss_pred CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCcc-----------ccCCCcceEEE--ECCEEEEEcCC
Confidence 4679999999899999999 4 899999975 6766544333200 11235889988 5779999984
Q ss_pred -CCeEEEEc-CCCccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC------------CcEEEEcCC-CeEEEE
Q psy8782 195 -PRIIKTTL-GDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF------------NLIRRIMTD-GTVRTV 259 (482)
Q Consensus 195 -~~~i~~~~-g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~------------~~I~~i~~~-G~v~~~ 259 (482)
.+.+..+. .+++... ....-..|.+++++++|.+||++. +.|.++++. +++...
T Consensus 150 ~~~~v~viD~~t~~~~~-----------~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~ 218 (328)
T 3dsm_A 150 YQNRILKIDTETDKVVD-----------ELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQ 218 (328)
T ss_dssp TCCEEEEEETTTTEEEE-----------EEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEE
T ss_pred CCCEEEEEECCCCeEEE-----------EEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEE
Confidence 56666654 3444321 111124699999999999999987 269999975 677655
Q ss_pred EeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCC
Q psy8782 260 VRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAY 339 (482)
Q Consensus 260 ~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~ 339 (482)
+.... -..|.+|+++|+++.||+++. .|++++. .++++. ... .... ....
T Consensus 219 ~~~~~--g~~p~~la~~~d~~~lyv~~~---~v~~~d~------~t~~~~---~~~---------~~~~-------~~~~ 268 (328)
T 3dsm_A 219 FKFKL--GDWPSEVQLNGTRDTLYWINN---DIWRMPV------EADRVP---VRP---------FLEF-------RDTK 268 (328)
T ss_dssp EECCT--TCCCEEEEECTTSCEEEEESS---SEEEEET------TCSSCC---SSC---------SBCC-------CSSC
T ss_pred EecCC--CCCceeEEEecCCCEEEEEcc---EEEEEEC------CCCcee---eee---------eecC-------CCCc
Confidence 54321 137999999997779999986 8999985 233321 000 0000 1467
Q ss_pred cceEEEeC-CCcEEEEE----CCC--EEEEcCCCcEEEEEc
Q psy8782 340 PKGVAVSA-DNILYFAD----GTN--IRMVDRDGIVTTVIG 373 (482)
Q Consensus 340 P~giavd~-~G~lyvaD----~~n--Ir~i~~~G~i~ti~G 373 (482)
|.||++|+ +|+|||++ ..+ |.+++++|++...+.
T Consensus 269 p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g~~~~~i~ 309 (328)
T 3dsm_A 269 YYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGKLIDEFY 309 (328)
T ss_dssp EEEEEECTTTCCEEEEECTTSSSEEEEEEECTTCCEEEEEE
T ss_pred eEEEEEcCCCCeEEEEcccccccCCEEEEECCCCCEEEEEE
Confidence 99999998 78999999 544 999999998655543
No 56
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.49 E-value=1.1e-11 Score=121.05 Aligned_cols=186 Identities=9% Similarity=0.039 Sum_probs=128.9
Q ss_pred CCceEEEEcCCCcEEEEeCCcEEEEcCC-CeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcC----
Q psy8782 120 LAPVALATAPDGSLFVGDFNLIRRIMTD-GTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNK---- 194 (482)
Q Consensus 120 ~~P~glavd~~G~lyvaD~~~Irki~~~-G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~---- 194 (482)
..|.+++++++|+||++..++|.+++++ |+++.+....... ....|++++++++| ++|+++.
T Consensus 54 ~~~~~i~~~~dG~l~v~~~~~l~~~d~~~g~~~~~~~~~~~~------------~~~~~~di~~d~dG-~l~~~~~~~~~ 120 (297)
T 3g4e_A 54 APVSSVALRQSGGYVATIGTKFCALNWKEQSAVVLATVDNDK------------KNNRFNDGKVDPAG-RYFAGTMAEET 120 (297)
T ss_dssp SCEEEEEEBTTSSEEEEETTEEEEEETTTTEEEEEEECCTTC------------SSEEEEEEEECTTS-CEEEEEEECCS
T ss_pred CceEEEEECCCCCEEEEECCeEEEEECCCCcEEEEEecCCCC------------CCCCCCCEEECCCC-CEEEecCCccc
Confidence 3689999999999999998999999975 7777665432100 02347888888887 4888652
Q ss_pred --------CCeEEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcCCCC-EEEEEC--CcEEEEc---CCCeEE--E
Q psy8782 195 --------PRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGS-LFVGDF--NLIRRIM---TDGTVR--T 258 (482)
Q Consensus 195 --------~~~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~-lyv~D~--~~I~~i~---~~G~v~--~ 258 (482)
...+..+...|+... ....+..|.+|+++++|. ||++|. ++|++++ .+|.+. .
T Consensus 121 ~~~~~~~~~~~l~~~d~~g~~~~-----------~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~ 189 (297)
T 3g4e_A 121 APAVLERHQGALYSLFPDHHVKK-----------YFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRR 189 (297)
T ss_dssp BTTBCCTTCEEEEEECTTSCEEE-----------EEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEE
T ss_pred ccccccCCCcEEEEEECCCCEEE-----------EeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcE
Confidence 123444443333221 235577899999999995 999998 7899986 467653 2
Q ss_pred EEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccC
Q psy8782 259 VVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLA 338 (482)
Q Consensus 259 ~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~ 338 (482)
++..-......|.+|++|+ +|+|||++...++|++++. .+|++....-.+ -.
T Consensus 190 ~~~~~~~~~~~p~g~~~d~-~G~lwva~~~~~~v~~~d~------~tG~~~~~i~~p---------------------~~ 241 (297)
T 3g4e_A 190 SVYKLEKEEQIPDGMCIDA-EGKLWVACYNGGRVIRLDP------VTGKRLQTVKLP---------------------VD 241 (297)
T ss_dssp EEEECCGGGCEEEEEEEBT-TSCEEEEEETTTEEEEECT------TTCCEEEEEECS---------------------SS
T ss_pred EEEECCCCCCCCCeeEECC-CCCEEEEEcCCCEEEEEcC------CCceEEEEEECC---------------------CC
Confidence 2221122345799999999 8999999999999999993 237654333110 13
Q ss_pred CcceEEEe-CCC-cEEEEECC
Q psy8782 339 YPKGVAVS-ADN-ILYFADGT 357 (482)
Q Consensus 339 ~P~giavd-~~G-~lyvaD~~ 357 (482)
.|..+++. +++ .|||+...
T Consensus 242 ~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 242 KTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp BEEEEEEESGGGCEEEEEEBC
T ss_pred CceEEEEeCCCCCEEEEEcCC
Confidence 58899997 554 69999864
No 57
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.47 E-value=1.8e-11 Score=121.54 Aligned_cols=192 Identities=8% Similarity=0.007 Sum_probs=126.1
Q ss_pred CCccEEEEcCCCCEEEEE-C-CcEEEEcCC-CeEEEEEeecc--CCCCceeeEEEeCCCCeEEEEeCC-CCEEEEEecCC
Q psy8782 226 LAPVALATAPDGSLFVGD-F-NLIRRIMTD-GTVRTVVRLNV--TRVAYRYHIAYSPLDGTLYISDPE-SHQILRVKNAM 299 (482)
Q Consensus 226 ~~P~giavd~~G~lyv~D-~-~~I~~i~~~-G~v~~~~g~~~--~~~~~p~giavd~~~g~lyVaD~~-n~~I~~~~~~~ 299 (482)
..|.+|+++++|.|||++ . +.|.++++. +++...+..+. .+...|.+|+++ ++.|||++.+ .++|.+++.
T Consensus 84 ~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~--~~~lyv~~~~~~~~v~viD~-- 159 (328)
T 3dsm_A 84 TSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQY--GKYVYVNCWSYQNRILKIDT-- 159 (328)
T ss_dssp SSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEE--TTEEEEEECTTCCEEEEEET--
T ss_pred CCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEE--CCEEEEEcCCCCCEEEEEEC--
Confidence 368899998889999999 4 899999964 66665554332 344589999994 8999999984 899999995
Q ss_pred ccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEECC-----------C-EEEEcC-CC
Q psy8782 300 DFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADGT-----------N-IRMVDR-DG 366 (482)
Q Consensus 300 ~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~~-----------n-Ir~i~~-~G 366 (482)
.++.+....-. -..|.+|+++++|.+||+..+ + |.++|+ ++
T Consensus 160 ----~t~~~~~~i~~----------------------g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~ 213 (328)
T 3dsm_A 160 ----ETDKVVDELTI----------------------GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF 213 (328)
T ss_dssp ----TTTEEEEEEEC----------------------SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT
T ss_pred ----CCCeEEEEEEc----------------------CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC
Confidence 34443322210 135899999999999999875 3 999997 47
Q ss_pred cEEEEEcCC-CCCCCCCcCCCCc-eEEeccccceeEEeecCcceEEecccCCCceEEEeeceeeeeeeeeeecccceeee
Q psy8782 367 IVTTVIGNH-MHKSHWKPIPCEG-TLNIEEVSETMRDIRHTTGWACYGTGDNDHMTLIHCYGVMQDVVTSVFNNSHFLDV 444 (482)
Q Consensus 367 ~i~ti~G~~-~~~~~~~~~~~dg-~l~v~~~~~~~~~l~~p~giav~~~g~n~~~~~~~~~g~~~~~~~~~~n~~~~~~~ 444 (482)
++...+..+ +..+....+++|+ .||+... .+..++..++ ++.. .. ... .....|.
T Consensus 214 ~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~----------~~~~---~~-----~~~---~~~~~p~ 270 (328)
T 3dsm_A 214 TVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEAD----------RVPV---RP-----FLE---FRDTKYY 270 (328)
T ss_dssp EEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCS----------SCCS---SC-----SBC---CCSSCEE
T ss_pred eEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCC----------ceee---ee-----eec---CCCCceE
Confidence 766444332 2234456666655 6776553 3333332211 1100 00 000 0023567
Q ss_pred eeEEcC-CCcEEEEe----CCCCeeEEeecc
Q psy8782 445 HFSHQD-QDLFYFVK----ELPQKIRDDLDE 470 (482)
Q Consensus 445 ~i~~~~-~g~~yi~d----~~n~rIrk~~~~ 470 (482)
+|++++ +|.+|+++ ..+++|..+-.+
T Consensus 271 gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 271 GLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp EEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred EEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 899996 89999999 888888876443
No 58
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.47 E-value=2e-11 Score=119.65 Aligned_cols=227 Identities=15% Similarity=0.116 Sum_probs=148.1
Q ss_pred ccCCCeEEecCCc-eEEEeeCCCeEEEEeccCccCCCCCcCCCCCCcCcccCCCceEEEEcCCCcEEEEeC--CcEEEEc
Q psy8782 69 NFHEGILQKGDGS-NIYLKNKPRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF--NLIRRIM 145 (482)
Q Consensus 69 ~~~~gil~~gdG~-~~~~~~~~~~i~tv~G~G~~~~~~~~~~~G~~~~~~~l~~P~glavd~~G~lyvaD~--~~Irki~ 145 (482)
...+|.++..+|+ .+++......|..+.-+|....+ ...-..|.++++|++|+||+++. ++|.+++
T Consensus 45 ~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~~~~~-----------~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~ 113 (305)
T 3dr2_A 45 TWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGTVDVL-----------LDATAFTNGNAVDAQQRLVHCEHGRRAITRSD 113 (305)
T ss_dssp SSEEEEEEEGGGTEEEEEETTTTEEEEEETTSCEEEE-----------EESCSCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred cCccCCeEeCCCCEEEEEECCCCEEEEEeCCCCEEEE-----------eCCCCccceeeECCCCCEEEEECCCCEEEEEC
Confidence 3456778888887 44444445666665433322110 11224689999999999999997 6899999
Q ss_pred CCCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcC------------------CCeEEEEcC-CCc
Q psy8782 146 TDGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNK------------------PRIIKTTLG-DGH 206 (482)
Q Consensus 146 ~~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~------------------~~~i~~~~g-~G~ 206 (482)
++|+++.++..... ..+..|+.++++++| ++|++|. ...+..+.. +|+
T Consensus 114 ~~g~~~~~~~~~~~------------~~~~~~~~i~~d~dG-~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~ 180 (305)
T 3dr2_A 114 ADGQAHLLVGRYAG------------KRLNSPNDLIVARDG-AIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSP 180 (305)
T ss_dssp TTSCEEEEECEETT------------EECSCCCCEEECTTS-CEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCC
T ss_pred CCCCEEEEEeccCC------------CccCCCCCEEECCCC-CEEEeCcCCCccccccccccccccCCCeEEEEcCCCCc
Confidence 99998877643110 113568899999887 6898763 123333332 333
Q ss_pred cccCCCcCCCCCCCceeecCCccEEEEcCCCC-EEEEEC-------CcEEEEcCCCe-EEEEEeeccCCCCceeeEEEeC
Q psy8782 207 QRPLDCKDCNGEAGPKQRLLAPVALATAPDGS-LFVGDF-------NLIRRIMTDGT-VRTVVRLNVTRVAYRYHIAYSP 277 (482)
Q Consensus 207 ~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~-lyv~D~-------~~I~~i~~~G~-v~~~~g~~~~~~~~p~giavd~ 277 (482)
... .. .+..|.++++++||. |||+|. ++|++++.++. +...-.........|.+|++|+
T Consensus 181 ~~~-----------~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~ 248 (305)
T 3dr2_A 181 LQR-----------MA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDR 248 (305)
T ss_dssp CEE-----------EE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECT
T ss_pred EEE-----------Ee-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECC
Confidence 221 22 677899999999996 999998 37999875432 2111000112345799999999
Q ss_pred CCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCC-cEEEEEC
Q psy8782 278 LDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADN-ILYFADG 356 (482)
Q Consensus 278 ~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G-~lyvaD~ 356 (482)
+|+||++. .+.|++++ ++|........ . ..|..+++++++ .|||+..
T Consensus 249 -~G~lwv~~--~~gv~~~~-------~~g~~~~~~~~-------------------~---~~~~~~~f~~d~~~L~it~~ 296 (305)
T 3dr2_A 249 -GGWLWSSS--GTGVCVFD-------SDGQLLGHIPT-------------------P---GTASNCTFDQAQQRLFITGG 296 (305)
T ss_dssp -TSCEEECC--SSEEEEEC-------TTSCEEEEEEC-------------------S---SCCCEEEECTTSCEEEEEET
T ss_pred -CCCEEEec--CCcEEEEC-------CCCCEEEEEEC-------------------C---CceeEEEEeCCCCEEEEEcC
Confidence 89999998 45799998 56664333211 0 137889998776 6999988
Q ss_pred CCEEEEc
Q psy8782 357 TNIRMVD 363 (482)
Q Consensus 357 ~nIr~i~ 363 (482)
..+.+++
T Consensus 297 ~~l~~~~ 303 (305)
T 3dr2_A 297 PCLWMLP 303 (305)
T ss_dssp TEEEEEE
T ss_pred CeEEEEE
Confidence 7666654
No 59
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=99.45 E-value=2.6e-12 Score=129.31 Aligned_cols=122 Identities=25% Similarity=0.349 Sum_probs=90.7
Q ss_pred eecCCccEEEEcCCCCEEEEEC-CcEEEEcCCCeEEEEEeec--cCCCCceeeEEEeCC---CCeEEEEeCCC-----CE
Q psy8782 223 QRLLAPVALATAPDGSLFVGDF-NLIRRIMTDGTVRTVVRLN--VTRVAYRYHIAYSPL---DGTLYISDPES-----HQ 291 (482)
Q Consensus 223 ~~l~~P~giavd~~G~lyv~D~-~~I~~i~~~G~v~~~~g~~--~~~~~~p~giavd~~---~g~lyVaD~~n-----~~ 291 (482)
..|..|.+|+++++|.|||++. ++|++++ +|+...+.... ......|.+|+++|+ ++.|||+++.. ++
T Consensus 28 ~~l~~P~~ia~~pdG~l~V~e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 28 GGLEVPWALAFLPDGGMLIAERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CCCSCEEEEEECTTSCEEEEETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCCCCceEEEEcCCCeEEEEeCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 4578999999999999999999 8999999 88876665432 234568999999994 48999999865 89
Q ss_pred EEEEecCCccCCCCC---cEEEEe-cCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEEC-----------
Q psy8782 292 ILRVKNAMDFSAPDY---NVEPAV-GSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADG----------- 356 (482)
Q Consensus 292 I~~~~~~~~~~~~~g---~~~~va-G~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~----------- 356 (482)
|.+++.. .+ ..+++. +. +........|.+|+++++|.|||++.
T Consensus 107 v~r~~~~------~~~~~~~~~l~~~~----------------p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~ 164 (352)
T 2ism_A 107 VVRLRHL------GERGVLDRVVLDGI----------------PARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDL 164 (352)
T ss_dssp EEEEEEC------SSCEEEEEEEEEEE----------------CCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCT
T ss_pred EEEEEeC------CCCcCceEEEEEeC----------------CCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCC
Confidence 9999852 22 122222 11 10012356789999999999999974
Q ss_pred ----CCEEEEcCCCc
Q psy8782 357 ----TNIRMVDRDGI 367 (482)
Q Consensus 357 ----~nIr~i~~~G~ 367 (482)
+.|.+++++|.
T Consensus 165 ~~~~g~I~ri~~dG~ 179 (352)
T 2ism_A 165 ASLGGKILRLTPEGE 179 (352)
T ss_dssp TCSSSEEEEECTTSS
T ss_pred CCCceEEEEEcCCCC
Confidence 23888888884
No 60
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=99.45 E-value=5.2e-11 Score=119.02 Aligned_cols=160 Identities=24% Similarity=0.300 Sum_probs=106.6
Q ss_pred ccCCCceEEEEcCCCcEEEEeC--CcEEEEcCC-CeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEc
Q psy8782 117 QRLLAPVALATAPDGSLFVGDF--NLIRRIMTD-GTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKN 193 (482)
Q Consensus 117 ~~l~~P~glavd~~G~lyvaD~--~~Irki~~~-G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d 193 (482)
..|..|++|++.|+|.|||++. ++|++++++ |..+.+......
T Consensus 29 ~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v---------------------------------- 74 (347)
T 3das_A 29 TGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGV---------------------------------- 74 (347)
T ss_dssp CCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTC----------------------------------
T ss_pred cCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCce----------------------------------
Confidence 4588999999999999999997 799999875 665544322100
Q ss_pred CCCeEEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcCC----CCEEEEEC----CcEEEEcCCC---------eE
Q psy8782 194 KPRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPD----GSLFVGDF----NLIRRIMTDG---------TV 256 (482)
Q Consensus 194 ~~~~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~----G~lyv~D~----~~I~~i~~~G---------~v 256 (482)
.......|.||+++|+ |.|||+.+ ++|.|+..++ ..
T Consensus 75 ---------------------------~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~ 127 (347)
T 3das_A 75 ---------------------------SPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAP 127 (347)
T ss_dssp ---------------------------CCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCC
T ss_pred ---------------------------eecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCc
Confidence 1122346889999984 88999753 7899987554 22
Q ss_pred EEEE-eeccCCCCceeeEEEeCCCCeEEEEe-------------CCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCC
Q psy8782 257 RTVV-RLNVTRVAYRYHIAYSPLDGTLYISD-------------PESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGD 322 (482)
Q Consensus 257 ~~~~-g~~~~~~~~p~giavd~~~g~lyVaD-------------~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~ 322 (482)
.+++ +...........|+++| +|.|||+. ...++|+|++ ++|.+. .++ |
T Consensus 128 ~~i~~~~p~~~~H~g~~l~fgp-DG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~-------~dG~ip--~~n-----P-- 190 (347)
T 3das_A 128 DTVFRGIPKGVIHNGGRIAFGP-DKMLYAGTGESGDTGLSQDRKSLGGKILRMT-------PDGEPA--PGN-----P-- 190 (347)
T ss_dssp EEEEEEECCCSSCCCCCEEECT-TSCEEEECBCTTCGGGTTCTTCSTTCEEEEC-------TTSSBC--TTC-----S--
T ss_pred EEEEEcCCCCCCccCccccCCC-CCCEEEEECCCCCCccccCCCCCCCEEEEEe-------CCCCcc--CCC-----C--
Confidence 3333 22223334567799999 89999994 2357899998 454310 000 0
Q ss_pred CCccCCCccccccccCCcceEEEeCCCcEEEEECCC
Q psy8782 323 EAHCGDGAPARDAKLAYPKGVAVSADNILYFADGTN 358 (482)
Q Consensus 323 ~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~~n 358 (482)
+.+. .-...-+.+|.||++|++|.||++|.+.
T Consensus 191 --f~~~--~i~a~G~RNp~Gla~dp~G~L~~~d~g~ 222 (347)
T 3das_A 191 --FPGS--PVYSYGHRNVQGLAWDDKQRLFASEFGQ 222 (347)
T ss_dssp --STTC--CEEEBCCSBCCEEEECTTCCEEEEECCS
T ss_pred --CCCC--eEEeeCCCCcceEEECCCCCEEEEecCC
Confidence 0000 0111237899999999999999999864
No 61
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.44 E-value=1.6e-11 Score=121.85 Aligned_cols=204 Identities=15% Similarity=0.152 Sum_probs=133.8
Q ss_pred cCCCceEEEEcCC-CcEEEEeC--CcEEEEcCCC-eEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEc
Q psy8782 118 RLLAPVALATAPD-GSLFVGDF--NLIRRIMTDG-TVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKN 193 (482)
Q Consensus 118 ~l~~P~glavd~~-G~lyvaD~--~~Irki~~~G-~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d 193 (482)
.+..|.+++++++ +.||++|. ++|.++++++ .+..+ ... ..|.++++++++ ++|++.
T Consensus 47 ~~~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~-~~~-----------------~~v~~i~~~~dg-~l~v~~ 107 (326)
T 2ghs_A 47 PMLLGEGPTFDPASGTAWWFNILERELHELHLASGRKTVH-ALP-----------------FMGSALAKISDS-KQLIAS 107 (326)
T ss_dssp CCSBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEE-ECS-----------------SCEEEEEEEETT-EEEEEE
T ss_pred CCCCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEE-ECC-----------------CcceEEEEeCCC-eEEEEE
Confidence 4556889999996 78999997 8999999865 44332 211 135667777765 566665
Q ss_pred CCCeEEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC--------CcEEEEcCCCeEEEEEeeccC
Q psy8782 194 KPRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF--------NLIRRIMTDGTVRTVVRLNVT 265 (482)
Q Consensus 194 ~~~~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~--------~~I~~i~~~G~v~~~~g~~~~ 265 (482)
..++...-..+|+........ .......|.++++|++|++|+++. ..|++++ +|++..+..
T Consensus 108 ~~gl~~~d~~~g~~~~~~~~~------~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~g~~~~~~~---- 176 (326)
T 2ghs_A 108 DDGLFLRDTATGVLTLHAELE------SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KGKVTKLFA---- 176 (326)
T ss_dssp TTEEEEEETTTCCEEEEECSS------TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TTEEEEEEE----
T ss_pred CCCEEEEECCCCcEEEEeeCC------CCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-CCcEEEeeC----
Confidence 444333333344432110000 001234688999999999999985 4799999 888766542
Q ss_pred CCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCC-cE---EEEecCCcccCCCCCCccCCCccccccccCCcc
Q psy8782 266 RVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDY-NV---EPAVGSGERCLPGDEAHCGDGAPARDAKLAYPK 341 (482)
Q Consensus 266 ~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g-~~---~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~ 341 (482)
.+..|+++++++++..||+++..+++|++++... .+| .+ ..+... ......|.
T Consensus 177 ~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~----~~Gl~~~~~~~~~~~-------------------~~~~~~p~ 233 (326)
T 2ghs_A 177 DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDA----RTGLPTGKAEVFIDS-------------------TGIKGGMD 233 (326)
T ss_dssp EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCT----TTCCBSSCCEEEEEC-------------------TTSSSEEE
T ss_pred CCcccCCeEEcCCCCEEEEEECCCCEEEEEEccc----ccCCcccCceEEEEC-------------------CCCCCCCC
Confidence 2456899999994447999999999999998520 123 21 111110 00123589
Q ss_pred eEEEeCCCcEEEEECC--CEEEEcCCCcEEEEEcC
Q psy8782 342 GVAVSADNILYFADGT--NIRMVDRDGIVTTVIGN 374 (482)
Q Consensus 342 giavd~~G~lyvaD~~--nIr~i~~~G~i~ti~G~ 374 (482)
++++|++|+|||+... .|.+++++|.+...+..
T Consensus 234 gi~~d~~G~lwva~~~~~~v~~~d~~g~~~~~i~~ 268 (326)
T 2ghs_A 234 GSVCDAEGHIWNARWGEGAVDRYDTDGNHIARYEV 268 (326)
T ss_dssp EEEECTTSCEEEEEETTTEEEEECTTCCEEEEEEC
T ss_pred eeEECCCCCEEEEEeCCCEEEEECCCCCEEEEEEC
Confidence 9999999999999854 39999999886555443
No 62
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=99.42 E-value=4.8e-12 Score=127.53 Aligned_cols=150 Identities=18% Similarity=0.253 Sum_probs=103.8
Q ss_pred eecCCccEEEEcCCCCEEEEEC-CcEEEEcCCCeEEEEEeec--cCCCCceeeEEEeCC---CCeEEEEeCC---C----
Q psy8782 223 QRLLAPVALATAPDGSLFVGDF-NLIRRIMTDGTVRTVVRLN--VTRVAYRYHIAYSPL---DGTLYISDPE---S---- 289 (482)
Q Consensus 223 ~~l~~P~giavd~~G~lyv~D~-~~I~~i~~~G~v~~~~g~~--~~~~~~p~giavd~~---~g~lyVaD~~---n---- 289 (482)
..|..|.+|+++++|.|||++. ++|++++++|+ ..+.... ......|.+|+++|+ ++.|||++.. +
T Consensus 26 ~~l~~P~~ia~~pdG~l~V~e~~g~I~~~d~~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~ 104 (354)
T 3a9g_A 26 SDLEVPWSIAPLGGGRYLVTERPGRLVLISPSGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR 104 (354)
T ss_dssp CSCSCEEEEEEEETTEEEEEETTTEEEEECSSCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred CCCCCCeEEEEcCCCeEEEEeCCCEEEEEeCCCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence 3578999999999999999999 89999999998 5554432 233567999999995 5899999874 4
Q ss_pred CEEEEEecCCccCCCCCc---EEEEe-cCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEECC--------
Q psy8782 290 HQILRVKNAMDFSAPDYN---VEPAV-GSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADGT-------- 357 (482)
Q Consensus 290 ~~I~~~~~~~~~~~~~g~---~~~va-G~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~~-------- 357 (482)
++|.|++.... ++. .+++. +. + ......|.+|+++++|.|||++..
T Consensus 105 ~~v~r~~~~~~----~~~~~~~~~l~~~~----------------~--~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~ 162 (354)
T 3a9g_A 105 NRVIRGRLDGS----TFKLKEVKTLIDGI----------------P--GAYIHNGGRIRFGPDGMLYITTGDAADPRLAQ 162 (354)
T ss_dssp EEEEEEEECSS----SCCEEEEEEEEEEE----------------E--CCSSCCCCCEEECTTSCEEEECCCTTCGGGGT
T ss_pred eEEEEEEECCC----CcCcCccEEEEEcC----------------C--CCCCcCCceEEECCCCcEEEEECCCCCCcccc
Confidence 79999985321 111 22222 11 0 112557899999999999999642
Q ss_pred -------CEEEEcCCCcE--------EEEEcCCCCCCCCCcCCC-CceEEeccc
Q psy8782 358 -------NIRMVDRDGIV--------TTVIGNHMHKSHWKPIPC-EGTLNIEEV 395 (482)
Q Consensus 358 -------nIr~i~~~G~i--------~ti~G~~~~~~~~~~~~~-dg~l~v~~~ 395 (482)
.|.+++++|.+ ..+...+...+....+++ +|.||+.+.
T Consensus 163 d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~ 216 (354)
T 3a9g_A 163 DLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEH 216 (354)
T ss_dssp CTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEEC
T ss_pred CCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEec
Confidence 38899998863 122223334444556666 567777665
No 63
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.40 E-value=9.3e-11 Score=116.19 Aligned_cols=245 Identities=16% Similarity=0.124 Sum_probs=148.0
Q ss_pred CCCceEEEEcCCCcEEEEeC----CcEEEEcC-CCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEc
Q psy8782 119 LLAPVALATAPDGSLFVGDF----NLIRRIMT-DGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKN 193 (482)
Q Consensus 119 l~~P~glavd~~G~lyvaD~----~~Irki~~-~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d 193 (482)
...|.+|+++|+|.||+++. +.|+.++. +|....+..... ....|.++++++++..||+++
T Consensus 39 ~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~--------------~~~~p~~~a~spdg~~l~~~~ 104 (347)
T 3hfq_A 39 TQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVA--------------PGTPPAYVAVDEARQLVYSAN 104 (347)
T ss_dssp CSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEE--------------ESCCCSEEEEETTTTEEEEEE
T ss_pred cCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeec--------------CCCCCEEEEECCCCCEEEEEe
Confidence 45789999999999999875 57888775 355433321100 023589999999999999987
Q ss_pred -CCCeEEEEc--CCCccccCCCcCCCC-CCCceeecCCccEEEEcCCCCEEEEEC--CcEEEEcC--CCeEEEEEeeccC
Q psy8782 194 -KPRIIKTTL--GDGHQRPLDCKDCNG-EAGPKQRLLAPVALATAPDGSLFVGDF--NLIRRIMT--DGTVRTVVRLNVT 265 (482)
Q Consensus 194 -~~~~i~~~~--g~G~~~~~~~~~~~g-~~~~~~~l~~P~giavd~~G~lyv~D~--~~I~~i~~--~G~v~~~~g~~~~ 265 (482)
..+.+..+. .+|...........+ .+........|..++++|+|.||+++. +.|+.++. +|++.........
T Consensus 105 ~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~ 184 (347)
T 3hfq_A 105 YHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTME 184 (347)
T ss_dssp TTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECC
T ss_pred CCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcC
Confidence 456555543 333322110000000 000112234688999999999999998 67777763 5776554332222
Q ss_pred CCCceeeEEEeCCCC-eEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEE
Q psy8782 266 RVAYRYHIAYSPLDG-TLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVA 344 (482)
Q Consensus 266 ~~~~p~giavd~~~g-~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~gia 344 (482)
.-..|.+++++| +| .||+++...++|+.++... .+|..+.+.-.... + .+ ......|.+++
T Consensus 185 ~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~----~~g~~~~~~~~~~~--~-------~~----~~~~~~~~~i~ 246 (347)
T 3hfq_A 185 AGFGPRHLVFSP-DGQYAFLAGELSSQIASLKYDT----QTGAFTQLGIVKTI--P-------AD----YTAHNGAAAIR 246 (347)
T ss_dssp TTCCEEEEEECT-TSSEEEEEETTTTEEEEEEEET----TTTEEEEEEEEESS--C-------TT----CCSCCEEEEEE
T ss_pred CCCCCceEEECC-CCCEEEEEeCCCCEEEEEEecC----CCCceEEeeeeeec--C-------CC----CCCCCcceeEE
Confidence 334789999999 55 5999999999988887431 24554433211000 0 00 11135689999
Q ss_pred EeCCCc-EEEEECCC--EEEEc--CCCcEEEEEc--CCCCCCCCCcCCCCce-EEeccc
Q psy8782 345 VSADNI-LYFADGTN--IRMVD--RDGIVTTVIG--NHMHKSHWKPIPCEGT-LNIEEV 395 (482)
Q Consensus 345 vd~~G~-lyvaD~~n--Ir~i~--~~G~i~ti~G--~~~~~~~~~~~~~dg~-l~v~~~ 395 (482)
++++|. ||+++... |++++ ++|.+..+.. .....+....+++||. ||+...
T Consensus 247 ~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~ 305 (347)
T 3hfq_A 247 LSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQ 305 (347)
T ss_dssp ECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEET
T ss_pred ECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEc
Confidence 999997 88988643 77666 4465443321 2222233456677774 666543
No 64
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=99.40 E-value=1.2e-11 Score=124.23 Aligned_cols=199 Identities=16% Similarity=0.201 Sum_probs=129.2
Q ss_pred CCceEEEEcCCCcEEEEe-------------C-CcEEEEcCC---CeEEEEEeeCCCcccCCCccccccccccCCceEEE
Q psy8782 120 LAPVALATAPDGSLFVGD-------------F-NLIRRIMTD---GTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQ 182 (482)
Q Consensus 120 ~~P~glavd~~G~lyvaD-------------~-~~Irki~~~---G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~ 182 (482)
..|.+|+++++|.+|++. . .+|.+++++ +++..+.-.+. .| ......|.|+.+
T Consensus 50 ~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~-~~---------~~~~f~PhGi~~ 119 (355)
T 3sre_A 50 NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGN-TL---------DISSFNPHGIST 119 (355)
T ss_dssp SCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECS-SC---------CGGGCCEEEEEE
T ss_pred CCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCC-CC---------CcCceeeeeeEE
Confidence 579999999999999996 2 678888875 45554432221 01 011357999998
Q ss_pred ecC--CC-eEEEEcCC---CeEEE---EcCCCccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC---------
Q psy8782 183 KGD--GS-NIYLKNKP---RIIKT---TLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF--------- 244 (482)
Q Consensus 183 ~~~--g~-~lyi~d~~---~~i~~---~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~--------- 244 (482)
..+ +. .||+.+.. ..+.. ..+.+...... .. ....|+.|++++++++|.+||++.
T Consensus 120 ~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~--~~-----~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~ 192 (355)
T 3sre_A 120 FIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLK--TI-----RHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLK 192 (355)
T ss_dssp EECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEE--EE-----CCTTCSSEEEEEEEETTEEEEEESCSCSSHHHH
T ss_pred EECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEe--cc-----ccCCCCCCceEEEeCCCCEEecCCcEeCCcccc
Confidence 763 32 58888753 23332 22222221110 00 124588999999999999888864
Q ss_pred ----------CcEEEEcCCCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecC
Q psy8782 245 ----------NLIRRIMTDGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGS 314 (482)
Q Consensus 245 ----------~~I~~i~~~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~ 314 (482)
.+|+++++. ++..++ ..+..|+||+++|++..|||+|+..++|++++.. .+|.+...-
T Consensus 193 ~~e~~~~~~~g~vyr~d~~-~~~~~~----~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~-----~~g~l~~~~-- 260 (355)
T 3sre_A 193 SWEMHLGLAWSFVTYYSPN-DVRVVA----EGFDFANGINISPDGKYVYIAELLAHKIHVYEKH-----ANWTLTPLR-- 260 (355)
T ss_dssp HHHHHTTCCCEEEEEECTT-CCEEEE----EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC-----TTSCEEEEE--
T ss_pred cchhhccCCccEEEEEECC-eEEEee----cCCcccCcceECCCCCEEEEEeCCCCeEEEEEEC-----CCCcEecCE--
Confidence 368888884 555443 3477899999999556999999999999999853 245432210
Q ss_pred CcccCCCCCCccCCCccccccccCCcceEEEeC-CCcEEEEEC-CC--EEEEcCC
Q psy8782 315 GERCLPGDEAHCGDGAPARDAKLAYPKGVAVSA-DNILYFADG-TN--IRMVDRD 365 (482)
Q Consensus 315 g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~-~G~lyvaD~-~n--Ir~i~~~ 365 (482)
. + ..-..|.||++|+ +|+||+|.. +. |.+++|+
T Consensus 261 --~-------~---------~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 261 --V-------L---------SFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp --E-------E---------ECSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred --E-------E---------eCCCCCceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence 0 0 0024699999999 599999763 32 4444554
No 65
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.39 E-value=2.1e-10 Score=111.28 Aligned_cols=209 Identities=14% Similarity=0.176 Sum_probs=142.7
Q ss_pred CceEEEEcCCCcEEEEeCCcEEEEcCCCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEc-C-CCeE
Q psy8782 121 APVALATAPDGSLFVGDFNLIRRIMTDGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKN-K-PRII 198 (482)
Q Consensus 121 ~P~glavd~~G~lyvaD~~~Irki~~~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d-~-~~~i 198 (482)
.|..+++.|+|+||++..++|+.++++|++.--...+.. .........++| ++++++ . +..+
T Consensus 38 ~~~~~~~~pdG~ilvs~~~~V~~~d~~G~~~W~~~~~~~---------------~~~~~~~~~~dG-~~lv~~~~~~~~v 101 (276)
T 3no2_A 38 ECNSVAATKAGEILFSYSKGAKMITRDGRELWNIAAPAG---------------CEMQTARILPDG-NALVAWCGHPSTI 101 (276)
T ss_dssp CCCEEEECTTSCEEEECBSEEEEECTTSCEEEEEECCTT---------------CEEEEEEECTTS-CEEEEEESTTEEE
T ss_pred CCcCeEECCCCCEEEeCCCCEEEECCCCCEEEEEcCCCC---------------ccccccEECCCC-CEEEEecCCCCEE
Confidence 578899999999999666999999999986654433210 012233444555 333333 2 3445
Q ss_pred EEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC--CcEEEEcCCCeEEEEEeeccCCCCceeeEEEe
Q psy8782 199 KTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF--NLIRRIMTDGTVRTVVRLNVTRVAYRYHIAYS 276 (482)
Q Consensus 199 ~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~--~~I~~i~~~G~v~~~~g~~~~~~~~p~giavd 276 (482)
..+..+|+....- .... .....+..|.++++.++|+++|++. ++|+.++++|++.-.++.. ..|+++++.
T Consensus 102 ~~vd~~Gk~l~~~--~~~~--~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G~~~w~~~~~----~~~~~~~~~ 173 (276)
T 3no2_A 102 LEVNMKGEVLSKT--EFET--GIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNGQLLNSVKLS----GTPFSSAFL 173 (276)
T ss_dssp EEECTTSCEEEEE--EECC--SCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTTSCEEEEEECS----SCCCEEEEC
T ss_pred EEEeCCCCEEEEE--eccC--CCCcccccccCceECCCCCEEEEecCCCEEEEECCCCCEEEEEECC----CCccceeEc
Confidence 5555555532100 0000 0123345688899999999999998 7999999999987776643 468889998
Q ss_pred CCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEEC
Q psy8782 277 PLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADG 356 (482)
Q Consensus 277 ~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~ 356 (482)
+ +|+++|++..+++|+.++. .+|++.--.+... .. ..+|..|.++++.++|++||+++
T Consensus 174 ~-~g~~~v~~~~~~~v~~~d~------~tG~~~w~~~~~~----------~~-----~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 174 D-NGDCLVACGDAHCFVQLNL------ESNRIVRRVNAND----------IE-----GVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp T-TSCEEEECBTTSEEEEECT------TTCCEEEEEEGGG----------SB-----SCCCSEEEEEEECTTSCEEEEEE
T ss_pred C-CCCEEEEeCCCCeEEEEeC------cCCcEEEEecCCC----------CC-----CccccccccceEcCCCCEEEEec
Confidence 8 8999999999999999994 3387655554211 01 12588899999999999999994
Q ss_pred -C---------C--EEEEcCCCcEEEEEcCC
Q psy8782 357 -T---------N--IRMVDRDGIVTTVIGNH 375 (482)
Q Consensus 357 -~---------n--Ir~i~~~G~i~ti~G~~ 375 (482)
+ + +..++++|++.--+...
T Consensus 232 ~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~ 262 (276)
T 3no2_A 232 QGHDREAGKGKHPQLVEIDSEGKVVWQLNDK 262 (276)
T ss_dssp CTTCTTGGGSCCCSEEEECTTSBEEEEECCT
T ss_pred cCccccccccCCceEEEECCCCCEEEEecCc
Confidence 1 2 77889999986555443
No 66
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.37 E-value=2.1e-09 Score=105.79 Aligned_cols=269 Identities=11% Similarity=0.146 Sum_probs=164.9
Q ss_pred CCceEEEEcCCCc-EEEEeC--------CcEEEEcCC-CeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeE
Q psy8782 120 LAPVALATAPDGS-LFVGDF--------NLIRRIMTD-GTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNI 189 (482)
Q Consensus 120 ~~P~glavd~~G~-lyvaD~--------~~Irki~~~-G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~l 189 (482)
..|.+++++++|. ||+++. +.|++++.+ +++...+..+ ..|.++.++++++.+
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-----------------~~~~~~~~s~dg~~l 103 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-----------------LKPFGATINNTTQTL 103 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-----------------SCCCSEEEETTTTEE
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-----------------CCcceEEECCCCCEE
Confidence 4689999999975 899884 379999874 6655444321 247889999999889
Q ss_pred EEEcC-CCeEEEEc-CCCcccc-CCCcCCCCCCCceeecCCccEEEEcCCCC-EEEEEC---CcEEEEcC-CCeEEEEEe
Q psy8782 190 YLKNK-PRIIKTTL-GDGHQRP-LDCKDCNGEAGPKQRLLAPVALATAPDGS-LFVGDF---NLIRRIMT-DGTVRTVVR 261 (482)
Q Consensus 190 yi~d~-~~~i~~~~-g~G~~~~-~~~~~~~g~~~~~~~l~~P~giavd~~G~-lyv~D~---~~I~~i~~-~G~v~~~~g 261 (482)
|+++. .+.+..+. .+++... .... .+..........|.+++++++|. ||+++. ++|++++. ++++...+.
T Consensus 104 ~v~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~ 181 (353)
T 3vgz_A 104 WFGNTVNSAVTAIDAKTGEVKGRLVLD--DRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQ 181 (353)
T ss_dssp EEEETTTTEEEEEETTTCCEEEEEESC--CCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEEC
T ss_pred EEEecCCCEEEEEeCCCCeeEEEEecC--CCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEec
Confidence 99876 45666554 3444311 1000 00000011122488999999985 899983 67999996 466655543
Q ss_pred eccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcc
Q psy8782 262 LNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPK 341 (482)
Q Consensus 262 ~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~ 341 (482)
. .-..|.+++++|++..||+++. ++.|+.++. .++........+. . .....|.
T Consensus 182 ~---~~~~~~~~~~s~dg~~l~~~~~-~~~i~~~d~------~~~~~~~~~~~~~-----------~------~~~~~~~ 234 (353)
T 3vgz_A 182 N---TGKMSTGLALDSEGKRLYTTNA-DGELITIDT------ADNKILSRKKLLD-----------D------GKEHFFI 234 (353)
T ss_dssp C---CCTTCCCCEEETTTTEEEEECT-TSEEEEEET------TTTEEEEEEECCC-----------S------SSCCCEE
T ss_pred C---CCCccceEEECCCCCEEEEEcC-CCeEEEEEC------CCCeEEEEEEcCC-----------C------CCCcccc
Confidence 1 2235899999995567999887 688999985 3555433322110 1 1134688
Q ss_pred eEEEeCCCc-EEEEECCC--EEEEcC-CCcEEEEEcCCCCCCCCCcCCCCce-EEeccc-cceeEEeecCcceEEecccC
Q psy8782 342 GVAVSADNI-LYFADGTN--IRMVDR-DGIVTTVIGNHMHKSHWKPIPCEGT-LNIEEV-SETMRDIRHTTGWACYGTGD 415 (482)
Q Consensus 342 giavd~~G~-lyvaD~~n--Ir~i~~-~G~i~ti~G~~~~~~~~~~~~~dg~-l~v~~~-~~~~~~l~~p~giav~~~g~ 415 (482)
+++++++|. ||+++... |+++|. +|++...+..+. +....+++||. +|+... ..++..++..++-.
T Consensus 235 ~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~------ 306 (353)
T 3vgz_A 235 NISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKV------ 306 (353)
T ss_dssp EEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEE------
T ss_pred eEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeE------
Confidence 999999987 89998763 999986 577655544332 22345566764 666543 23444333222111
Q ss_pred CCceEEEeeceeeeeeeeeeecccceeeeeeEEcCCCc-EEEEeCC
Q psy8782 416 NDHMTLIHCYGVMQDVVTSVFNNSHFLDVHFSHQDQDL-FYFVKEL 460 (482)
Q Consensus 416 n~~~~~~~~~g~~~~~~~~~~n~~~~~~~~i~~~~~g~-~yi~d~~ 460 (482)
+..+. . ...+..++++++|. +|++...
T Consensus 307 ---~~~~~-----------~----~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 307 ---VKTFD-----------T----PTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp ---EEEEE-----------C----CSEEEEEEECTTSCEEEEEEEC
T ss_pred ---EEEEe-----------c----CCCCCeEEEcCCCCEEEEEEcc
Confidence 11110 0 11345788888887 8888654
No 67
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.34 E-value=8.9e-10 Score=106.84 Aligned_cols=192 Identities=10% Similarity=0.022 Sum_probs=128.5
Q ss_pred CccEEEEcCCCCEEEEECCcEEEEcCCCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCC-CCEEEEEecCCccCCCC
Q psy8782 227 APVALATAPDGSLFVGDFNLIRRIMTDGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPE-SHQILRVKNAMDFSAPD 305 (482)
Q Consensus 227 ~P~giavd~~G~lyv~D~~~I~~i~~~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~-n~~I~~~~~~~~~~~~~ 305 (482)
.|.++++.|+|+|+++..++|+.++++|++.-.+.... -.....+.+.+ +|.++|++.. +++|+.++ ++
T Consensus 38 ~~~~~~~~pdG~ilvs~~~~V~~~d~~G~~~W~~~~~~--~~~~~~~~~~~-dG~~lv~~~~~~~~v~~vd-------~~ 107 (276)
T 3no2_A 38 ECNSVAATKAGEILFSYSKGAKMITRDGRELWNIAAPA--GCEMQTARILP-DGNALVAWCGHPSTILEVN-------MK 107 (276)
T ss_dssp CCCEEEECTTSCEEEECBSEEEEECTTSCEEEEEECCT--TCEEEEEEECT-TSCEEEEEESTTEEEEEEC-------TT
T ss_pred CCcCeEECCCCCEEEeCCCCEEEECCCCCEEEEEcCCC--CccccccEECC-CCCEEEEecCCCCEEEEEe-------CC
Confidence 57789999999999966689999999999877665421 12456778888 9999999988 99999998 57
Q ss_pred CcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEECCC--EEEEcCCCcEEEEEcCCCCCCCCCc
Q psy8782 306 YNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADGTN--IRMVDRDGIVTTVIGNHMHKSHWKP 383 (482)
Q Consensus 306 g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~~n--Ir~i~~~G~i~ti~G~~~~~~~~~~ 383 (482)
|++..-.+... + ....+..|.+++++++|+++|++..+ |..+|++|++.--.+.+. .+...+
T Consensus 108 Gk~l~~~~~~~------------~---~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G~~~w~~~~~~-~~~~~~ 171 (276)
T 3no2_A 108 GEVLSKTEFET------------G---IERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNGQLLNSVKLSG-TPFSSA 171 (276)
T ss_dssp SCEEEEEEECC------------S---CSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTTSCEEEEEECSS-CCCEEE
T ss_pred CCEEEEEeccC------------C---CCcccccccCceECCCCCEEEEecCCCEEEEECCCCCEEEEEECCC-Ccccee
Confidence 77543332110 0 01234578899999999999999876 999999999876666542 233345
Q ss_pred CCCCceEEecccc-ceeEEeecCcceEEecccCCCceEEEeeceeeeeeeeeeecccceeeeeeEEcCCCcEEEEeCCC
Q psy8782 384 IPCEGTLNIEEVS-ETMRDIRHTTGWACYGTGDNDHMTLIHCYGVMQDVVTSVFNNSHFLDVHFSHQDQDLFYFVKELP 461 (482)
Q Consensus 384 ~~~dg~l~v~~~~-~~~~~l~~p~giav~~~g~n~~~~~~~~~g~~~~~~~~~~n~~~~~~~~i~~~~~g~~yi~d~~n 461 (482)
...+|.+++.... .++..++.-+|-.+- .+.... .....+.++.++...++|.+||+++..
T Consensus 172 ~~~~g~~~v~~~~~~~v~~~d~~tG~~~w---------~~~~~~--------~~~~~l~~~~~~~~~~~G~i~v~~~~g 233 (276)
T 3no2_A 172 FLDNGDCLVACGDAHCFVQLNLESNRIVR---------RVNAND--------IEGVQLFFVAQLFPLQNGGLYICNWQG 233 (276)
T ss_dssp ECTTSCEEEECBTTSEEEEECTTTCCEEE---------EEEGGG--------SBSCCCSEEEEEEECTTSCEEEEEECT
T ss_pred EcCCCCEEEEeCCCCeEEEEeCcCCcEEE---------EecCCC--------CCCccccccccceEcCCCCEEEEeccC
Confidence 5566766664432 244444422232221 111000 001135567788999999999999643
No 68
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=99.32 E-value=6e-10 Score=115.85 Aligned_cols=164 Identities=18% Similarity=0.274 Sum_probs=104.4
Q ss_pred ccCCCceEEEEcCCCcEEEEeC--CcEEEEcC-CCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEc
Q psy8782 117 QRLLAPVALATAPDGSLFVGDF--NLIRRIMT-DGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKN 193 (482)
Q Consensus 117 ~~l~~P~glavd~~G~lyvaD~--~~Irki~~-~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d 193 (482)
..|..|++|+++++|+|||++. .+|+++++ +|...++...... + ..|
T Consensus 24 ~~l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~-~-------------~~~---------------- 73 (454)
T 1cru_A 24 SNLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEI-V-------------NDA---------------- 73 (454)
T ss_dssp CCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTC-C-------------CCT----------------
T ss_pred CCCCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCcc-c-------------ccc----------------
Confidence 3588999999999999999998 47999976 4776665532110 0 000
Q ss_pred CCCeEEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcC----CCCEEEEEC--------------CcEEEEcCC--
Q psy8782 194 KPRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAP----DGSLFVGDF--------------NLIRRIMTD-- 253 (482)
Q Consensus 194 ~~~~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~----~G~lyv~D~--------------~~I~~i~~~-- 253 (482)
.....+.||+++| ++.|||+++ ++|.|+..+
T Consensus 74 -----------------------------~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~ 124 (454)
T 1cru_A 74 -----------------------------DGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKS 124 (454)
T ss_dssp -----------------------------TSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETT
T ss_pred -----------------------------CCCCceeEEEECCCcCcCCEEEEEEeccccCCCccccccccEEEEEEECCC
Confidence 0112467888888 688998884 378888643
Q ss_pred -CeE---EEEE-eeccCCCCceeeEEEeCCCCeEEEEeCC--------------------------------CCEEEEEe
Q psy8782 254 -GTV---RTVV-RLNVTRVAYRYHIAYSPLDGTLYISDPE--------------------------------SHQILRVK 296 (482)
Q Consensus 254 -G~v---~~~~-g~~~~~~~~p~giavd~~~g~lyVaD~~--------------------------------n~~I~~~~ 296 (482)
+++ ..++ +........+.+|+++| +|.|||+.-. .++|+|++
T Consensus 125 ~~~~~~~~~i~~~~p~~~~H~~~~l~f~p-DG~Lyv~~Gd~~~~~~~~~~~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~ 203 (454)
T 1cru_A 125 TDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIGDQGRNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLN 203 (454)
T ss_dssp TTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEECCTTTTSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEEC
T ss_pred CCCcCCcEEEEEcCCCCCCCCCCeEeECC-CCeEEEEECCCCCCCccccccccccccccccccccccCCCCCCeeEEEEe
Confidence 222 2333 22233445689999999 9999998431 36899998
Q ss_pred cCCccCCCCCcEEEEecCCcccCCCCCCccCC-CccccccccCCcceEEEeCCCcEEEEECCC
Q psy8782 297 NAMDFSAPDYNVEPAVGSGERCLPGDEAHCGD-GAPARDAKLAYPKGVAVSADNILYFADGTN 358 (482)
Q Consensus 297 ~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gd-g~~a~~a~l~~P~giavd~~G~lyvaD~~n 358 (482)
. +|.+- .++ -+.+. ...-...-+.+|.||++|++|.||++|.+.
T Consensus 204 ~-------dG~ip--~~N---------pf~~~~~~ei~a~G~RNp~gla~dp~G~L~~~d~g~ 248 (454)
T 1cru_A 204 L-------DGSIP--KDN---------PSFNGVVSHIYTLGHRNPQGLAFTPNGKLLQSEQGP 248 (454)
T ss_dssp T-------TSCCC--TTC---------CEETTEECSEEEBCCSEEEEEEECTTSCEEEEEECS
T ss_pred C-------CCCCC--CCC---------CCCCCCcceEEEECCCCcceEEECCCCCEEEEecCC
Confidence 4 44310 000 00000 000011226789999999999999999754
No 69
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.31 E-value=7.8e-10 Score=108.93 Aligned_cols=226 Identities=15% Similarity=0.229 Sum_probs=147.9
Q ss_pred CceEEEEcCCCc-EEEEeC--CcEEEEcC-CCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcC--
Q psy8782 121 APVALATAPDGS-LFVGDF--NLIRRIMT-DGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNK-- 194 (482)
Q Consensus 121 ~P~glavd~~G~-lyvaD~--~~Irki~~-~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~-- 194 (482)
.|.+++++++|. ||+++. +.|+.++. +|++......+..... .......|.++.++++++.+|+++.
T Consensus 90 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~s~dg~~l~~~~~~~ 162 (353)
T 3vgz_A 90 KPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRT-------EEVRPLQPRELVADDATNTVYISGIGK 162 (353)
T ss_dssp CCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCC-------SSCCCCEEEEEEEETTTTEEEEEEESS
T ss_pred CcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccc-------cccCCCCCceEEECCCCCEEEEEecCC
Confidence 588999999998 999988 79999987 4666554433211100 0001124788999999999999872
Q ss_pred CCeEEEEcC-CCccccCCCcCCCCCCCceeecCCccEEEEcCCCC-EEEEEC-CcEEEEcC-CCeEEEEEeeccC-CCCc
Q psy8782 195 PRIIKTTLG-DGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGS-LFVGDF-NLIRRIMT-DGTVRTVVRLNVT-RVAY 269 (482)
Q Consensus 195 ~~~i~~~~g-~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~-lyv~D~-~~I~~i~~-~G~v~~~~g~~~~-~~~~ 269 (482)
++.+..+.. +++.... ....-..|.+++++++|. ||+++. +.|+.++. ++++...+..+.. ....
T Consensus 163 ~~~i~~~d~~~~~~~~~----------~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 232 (353)
T 3vgz_A 163 ESVIWVVDGGNIKLKTA----------IQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHF 232 (353)
T ss_dssp SCEEEEEETTTTEEEEE----------ECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCC
T ss_pred CceEEEEcCCCCceEEE----------ecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcc
Confidence 555655543 3332210 000123488999999985 888888 78999984 5676665544222 3456
Q ss_pred eeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCC
Q psy8782 270 RYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADN 349 (482)
Q Consensus 270 p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G 349 (482)
|.+++++|+++.||+++...+.|+.++. .++....... +..|.+++++++|
T Consensus 233 ~~~~~~s~dg~~l~~~~~~~~~v~~~d~------~~~~~~~~~~-----------------------~~~~~~~~~s~dg 283 (353)
T 3vgz_A 233 FINISLDTARQRAFITDSKAAEVLVVDT------RNGNILAKVA-----------------------APESLAVLFNPAR 283 (353)
T ss_dssp EEEEEEETTTTEEEEEESSSSEEEEEET------TTCCEEEEEE-----------------------CSSCCCEEEETTT
T ss_pred cceEEECCCCCEEEEEeCCCCEEEEEEC------CCCcEEEEEE-----------------------cCCCceEEECCCC
Confidence 8899999955679999999999999995 3444332221 2245789999998
Q ss_pred c-EEEEECCC--EEEEcC-CCcEEEEEcCCCCCCCCCcCCCCce-EEec
Q psy8782 350 I-LYFADGTN--IRMVDR-DGIVTTVIGNHMHKSHWKPIPCEGT-LNIE 393 (482)
Q Consensus 350 ~-lyvaD~~n--Ir~i~~-~G~i~ti~G~~~~~~~~~~~~~dg~-l~v~ 393 (482)
. ||+++... |+++|. ++++...+..+. .+....+++||. ||+.
T Consensus 284 ~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~v~ 331 (353)
T 3vgz_A 284 NEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT-HPNSLALSADGKTLYVS 331 (353)
T ss_dssp TEEEEEETTTTEEEEEETTTTEEEEEEECCS-EEEEEEECTTSCEEEEE
T ss_pred CEEEEEECCCCeEEEEECCCCeEEEEEecCC-CCCeEEEcCCCCEEEEE
Confidence 7 99999643 999986 576655543332 223344556663 5553
No 70
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.31 E-value=5.1e-10 Score=110.15 Aligned_cols=189 Identities=15% Similarity=0.155 Sum_probs=125.7
Q ss_pred CCceEEEEcCCCcEEEEeC-C-----cEEEEcCCCe-EEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEE
Q psy8782 120 LAPVALATAPDGSLFVGDF-N-----LIRRIMTDGT-VRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLK 192 (482)
Q Consensus 120 ~~P~glavd~~G~lyvaD~-~-----~Irki~~~G~-v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~ 192 (482)
..|.+|+++++|+||+++. . .|.++++++. +..+..... ....|.++++++++ ++|++
T Consensus 87 ~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~--------------~~~~~~~i~~d~~g-~l~v~ 151 (333)
T 2dg1_A 87 ANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLS--------------TAYCIDDMVFDSKG-GFYFT 151 (333)
T ss_dssp SSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSS--------------SCCCEEEEEECTTS-CEEEE
T ss_pred CCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCc--------------cCCcccceEECCCC-CEEEE
Confidence 4699999999999999987 4 7999998754 443332110 01357788888876 68887
Q ss_pred cCC-------CeEEEEcCC-CccccCCCcCCCCCCCceeecCCccEEEEcCCCC-EEEEEC--CcEEEEcC--CCeEEEE
Q psy8782 193 NKP-------RIIKTTLGD-GHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGS-LFVGDF--NLIRRIMT--DGTVRTV 259 (482)
Q Consensus 193 d~~-------~~i~~~~g~-G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~-lyv~D~--~~I~~i~~--~G~v~~~ 259 (482)
+.. ..+..+... ++... ....+..|.+++++++|. ||+++. ++|++++. +|.....
T Consensus 152 ~~~~~~~~~~~~l~~~~~~~~~~~~-----------~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~ 220 (333)
T 2dg1_A 152 DFRGYSTNPLGGVYYVSPDFRTVTP-----------IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQP 220 (333)
T ss_dssp ECCCBTTBCCEEEEEECTTSCCEEE-----------EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEE
T ss_pred eccccccCCCceEEEEeCCCCEEEE-----------eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCccc
Confidence 642 334444322 22211 123456799999999996 999997 78999986 5543222
Q ss_pred Eee----ccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCcccccc
Q psy8782 260 VRL----NVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDA 335 (482)
Q Consensus 260 ~g~----~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a 335 (482)
++. .......|.+|++++ +|+|||++..+++|++++ +++........+. ...+
T Consensus 221 ~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~v~~~d-------~~g~~~~~~~~~~---------------~~~g 277 (333)
T 2dg1_A 221 FGATIPYYFTGHEGPDSCCIDS-DDNLYVAMYGQGRVLVFN-------KRGYPIGQILIPG---------------RDEG 277 (333)
T ss_dssp EEEEEEEECCSSSEEEEEEEBT-TCCEEEEEETTTEEEEEC-------TTSCEEEEEECTT---------------GGGT
T ss_pred ccceEEEecCCCCCCCceEECC-CCCEEEEEcCCCEEEEEC-------CCCCEEEEEEcCC---------------Cccc
Confidence 110 011225799999999 899999999889999998 4555433322110 0012
Q ss_pred ccCCcceEEEeCCC-cEEEEECC
Q psy8782 336 KLAYPKGVAVSADN-ILYFADGT 357 (482)
Q Consensus 336 ~l~~P~giavd~~G-~lyvaD~~ 357 (482)
.+..|.+++++++| .|||+...
T Consensus 278 ~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 278 HMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp CSCBCCEEEECTTSCEEEEEEEC
T ss_pred cccCcceEEECCCCCEEEEEeCc
Confidence 35679999999886 79998764
No 71
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=99.28 E-value=9.9e-10 Score=105.08 Aligned_cols=209 Identities=13% Similarity=0.087 Sum_probs=132.6
Q ss_pred CCceEEEEcCC-CcEEE-EeC-CcEEEEcCCCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcC-C
Q psy8782 120 LAPVALATAPD-GSLFV-GDF-NLIRRIMTDGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNK-P 195 (482)
Q Consensus 120 ~~P~glavd~~-G~lyv-aD~-~~Irki~~~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~-~ 195 (482)
..+.||+.+++ +.||+ .|. .+|.+++++|.+......+. ..++.||++..++ .++|++. .
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l~g---------------~~D~EGIa~~~~g-~~~vs~E~~ 90 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPLDF---------------VKDLETIEYIGDN-QFVISDERD 90 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEECSS---------------CSSEEEEEECSTT-EEEEEETTT
T ss_pred cCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEecCC---------------CCChHHeEEeCCC-EEEEEECCC
Confidence 46999999986 56887 455 79999999999876553311 2468899998766 5667653 3
Q ss_pred CeEEEE--cCCCccccCCCcCCCCCCCceeecCCccEEEEcCCC-CEEEEEC--C-cEEEEc--CCCeEEEEEee----c
Q psy8782 196 RIIKTT--LGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDG-SLFVGDF--N-LIRRIM--TDGTVRTVVRL----N 263 (482)
Q Consensus 196 ~~i~~~--~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G-~lyv~D~--~-~I~~i~--~~G~v~~~~g~----~ 263 (482)
+.+..+ ...+........... .. ....=....|||+|+++ .||++.- . .|+.++ +.+.-.++... .
T Consensus 91 ~~l~~~~v~~~~~i~~~~~~~~~-~~-~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~ 168 (255)
T 3qqz_A 91 YAIYVISLTPNSEVKILKKIKIP-LQ-ESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQR 168 (255)
T ss_dssp TEEEEEEECTTCCEEEEEEEECC-CS-SCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHH
T ss_pred CcEEEEEcCCCCeeeeeeeeccc-cc-cccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhcc
Confidence 444433 223321000000000 00 00001124899999976 7998876 2 677776 22222233321 1
Q ss_pred cCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceE
Q psy8782 264 VTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGV 343 (482)
Q Consensus 264 ~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~gi 343 (482)
...+..+.+|+++|..++|||....++++..++ .+|.+.-..--.. |. ......+.+|.||
T Consensus 169 ~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d-------~~g~~~~~~~L~~----------g~--~~l~~~~~qpEGi 229 (255)
T 3qqz_A 169 QFTLDDVSGAEFNQQKNTLLVLSHESRALQEVT-------LVGEVIGEMSLTK----------GS--RGLSHNIKQAEGV 229 (255)
T ss_dssp TCCSSCCCEEEEETTTTEEEEEETTTTEEEEEC-------TTCCEEEEEECST----------TG--GGCSSCCCSEEEE
T ss_pred ccccCCceeEEEcCCCCeEEEEECCCCeEEEEc-------CCCCEEEEEEcCC----------cc--CCcccccCCCCee
Confidence 234557899999999999999999999999999 5777444332110 11 1123457899999
Q ss_pred EEeCCCcEEEEECCC-EEEEcCC
Q psy8782 344 AVSADNILYFADGTN-IRMVDRD 365 (482)
Q Consensus 344 avd~~G~lyvaD~~n-Ir~i~~~ 365 (482)
|+|++|+|||+.-.| +.++.+.
T Consensus 230 a~d~~G~lyIvsE~n~~y~f~~~ 252 (255)
T 3qqz_A 230 AMDASGNIYIVSEPNRFYRFTPQ 252 (255)
T ss_dssp EECTTCCEEEEETTTEEEEEEC-
T ss_pred EECCCCCEEEEcCCceEEEEEec
Confidence 999999999997777 8888764
No 72
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.28 E-value=3.1e-09 Score=105.07 Aligned_cols=226 Identities=12% Similarity=0.063 Sum_probs=134.1
Q ss_pred ecCCccEEEEcCCCCEEEEEC----CcEEEEcCC-CeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecC
Q psy8782 224 RLLAPVALATAPDGSLFVGDF----NLIRRIMTD-GTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNA 298 (482)
Q Consensus 224 ~l~~P~giavd~~G~lyv~D~----~~I~~i~~~-G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~ 298 (482)
....|.+|+++|+|.||+++. +.|+.++.+ |+...+. ........|.+|+++|+...||+++...+.|..++..
T Consensus 38 ~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~-~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~ 116 (347)
T 3hfq_A 38 ATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLN-TVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIA 116 (347)
T ss_dssp ECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEE-EEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred ccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEee-eeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeC
Confidence 345789999999999999885 578888754 4433322 2122345799999999445699999888888888753
Q ss_pred CccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEECCC--EEEEc--CCCcEEEEEc-
Q psy8782 299 MDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADGTN--IRMVD--RDGIVTTVIG- 373 (482)
Q Consensus 299 ~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~~n--Ir~i~--~~G~i~ti~G- 373 (482)
.+|....+..... .+.+ +........|.+++++++|.+|+++... |++++ ++|.+..+..
T Consensus 117 -----~~g~~~~~~~~~~---------~~~~-p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~ 181 (347)
T 3hfq_A 117 -----ADGALTLTDTVQH---------SGHG-PRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVL 181 (347)
T ss_dssp -----TTSCEEEEEEEEC---------CCCC-SSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEE
T ss_pred -----CCCCeeecceeec---------CCCC-CCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeE
Confidence 3555554432110 0111 1111234578999999999999999865 77666 3577654321
Q ss_pred --CCCCCCCCCcCCCCce-EEeccc-cceeEEe--e-----------------------cCcceEEeccc--------CC
Q psy8782 374 --NHMHKSHWKPIPCEGT-LNIEEV-SETMRDI--R-----------------------HTTGWACYGTG--------DN 416 (482)
Q Consensus 374 --~~~~~~~~~~~~~dg~-l~v~~~-~~~~~~l--~-----------------------~p~giav~~~g--------~n 416 (482)
.....+....+++||. ||+... ..++..+ . .|.+++++++| .+
T Consensus 182 ~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~ 261 (347)
T 3hfq_A 182 TMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGY 261 (347)
T ss_dssp ECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETT
T ss_pred EcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCC
Confidence 1222233356678885 776432 2222221 1 13336666654 34
Q ss_pred CceEEEeec--eeeeeeeeeeecccceeeeeeEEcCCCc-EEEEeCCCCeeEEe
Q psy8782 417 DHMTLIHCY--GVMQDVVTSVFNNSHFLDVHFSHQDQDL-FYFVKELPQKIRDD 467 (482)
Q Consensus 417 ~~~~~~~~~--g~~~~~~~~~~n~~~~~~~~i~~~~~g~-~yi~d~~n~rIrk~ 467 (482)
+++.++... +.... ..........+..++++++|. ||+++..+++|+.+
T Consensus 262 ~~v~v~~~~~~g~~~~--~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~ 313 (347)
T 3hfq_A 262 NTLAVFAVTADGHLTL--IQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLY 313 (347)
T ss_dssp TEEEEEEECGGGCEEE--EEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CEEEEEEECCCCcEEE--eEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEE
Confidence 455555432 11111 111111112356789999986 89999888888765
No 73
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=99.26 E-value=5.3e-10 Score=110.07 Aligned_cols=211 Identities=13% Similarity=0.097 Sum_probs=130.0
Q ss_pred ccCCCceEEEEcC-CCcEEEEeC--CcEEEEcCC-CeEEEEEeeCCCccc--CCCccccccccccCCceEEE---ecCCC
Q psy8782 117 QRLLAPVALATAP-DGSLFVGDF--NLIRRIMTD-GTVRTVVRLKNQKFE--KFPKILTSCFLSLSPSGILQ---KGDGS 187 (482)
Q Consensus 117 ~~l~~P~glavd~-~G~lyvaD~--~~Irki~~~-G~v~ti~g~g~~~~~--~~~~~~~~~~~~~~P~gi~~---~~~g~ 187 (482)
+.-..|++++.|+ +|.+|+++. .+|.+++++ +.+..+. . .+.+ +.+ ...|.|+.+ +++ +
T Consensus 10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~-~--~~~s~~g~~--------~~~~sGl~~~~~D~~-g 77 (334)
T 2p9w_A 10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVV-I--DGASSNGDG--------EQQMSGLSLLTHDNS-K 77 (334)
T ss_dssp CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEEC-C--TTTCCSSCC--------SEEEEEEEESSSSSC-C
T ss_pred CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEe-c--CCccccCCC--------cceeeEEEEeccCCC-C
Confidence 3446899999987 789999997 899999998 4444431 1 1100 100 123579999 677 5
Q ss_pred eEEE-EcC-------------CCeEEEEc-C---CCccccC-CCcCCCCCCCcee-------ecCCccEEEEcCCCCEEE
Q psy8782 188 NIYL-KNK-------------PRIIKTTL-G---DGHQRPL-DCKDCNGEAGPKQ-------RLLAPVALATAPDGSLFV 241 (482)
Q Consensus 188 ~lyi-~d~-------------~~~i~~~~-g---~G~~~~~-~~~~~~g~~~~~~-------~l~~P~giavd~~G~lyv 241 (482)
.|++ ++. .+.+..+. . +++.... +.. ..... .+..|.+|++|++|++||
T Consensus 78 rL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~-----~~~~~~~~~~g~~~~~~nDvavD~~GnaYV 152 (334)
T 2p9w_A 78 RLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFE-----KVQDEFEKKAGKRPFGVVQSAQDRDGNSYV 152 (334)
T ss_dssp EEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESH-----HHHHHHHHHHSSCCEEEEEEEECTTSCEEE
T ss_pred cEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCc-----cccccccccccccccCCceeEECCCCCEEE
Confidence 7777 442 23333332 3 3433210 000 00001 233589999999999999
Q ss_pred EEC---CcEEEEcCCCeEEEEEeec---cCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCC
Q psy8782 242 GDF---NLIRRIMTDGTVRTVVRLN---VTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSG 315 (482)
Q Consensus 242 ~D~---~~I~~i~~~G~v~~~~g~~---~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g 315 (482)
+|. ..|.|++|+|+....+... ......++||+++|++..|++++. .+++.+|+... + +......
T Consensus 153 t~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~~----p---v~~~v~~- 223 (334)
T 2p9w_A 153 AFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVSK----P---YAWPEPV- 223 (334)
T ss_dssp EEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECSS----S---SCCCEEC-
T ss_pred eCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCCC----C---cceeecc-
Confidence 988 5799999999844444322 223345889999995557888888 99999999531 1 1000000
Q ss_pred cccCCCCCCccCCCccccccccCCcceE-EEeCCCcE-EEEECCC--EEEEcCCC
Q psy8782 316 ERCLPGDEAHCGDGAPARDAKLAYPKGV-AVSADNIL-YFADGTN--IRMVDRDG 366 (482)
Q Consensus 316 ~~~~~g~~~~~gdg~~a~~a~l~~P~gi-avd~~G~l-yvaD~~n--Ir~i~~~G 366 (482)
...|. ...|..|.+| ++..+|.+ +|++..+ +.+.+.||
T Consensus 224 --------~~~G~-----~~~~~~~dgilp~~~~G~vllV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 224 --------KINGD-----FGTLSGTEKIVTVPVGNESVLVGARAPYAISFRSWDN 265 (334)
T ss_dssp --------EESSC-----CCCCTTEEEEEEEEETTEEEEEEEETTEEEEEECSST
T ss_pred --------cccCC-----cccccCcccccccccCCEEEEEEcCCCCEEEEECCCC
Confidence 00011 1357889995 77778886 8999766 55666666
No 74
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.21 E-value=9.7e-09 Score=100.45 Aligned_cols=192 Identities=14% Similarity=0.125 Sum_probs=127.4
Q ss_pred CCceEEEEcCCCc-EEEEeC--CcEEEEcCC-CeE-EEEEeeCCCcccCCCccccccccccCCce-EEEecCCCeEEEEc
Q psy8782 120 LAPVALATAPDGS-LFVGDF--NLIRRIMTD-GTV-RTVVRLKNQKFEKFPKILTSCFLSLSPSG-ILQKGDGSNIYLKN 193 (482)
Q Consensus 120 ~~P~glavd~~G~-lyvaD~--~~Irki~~~-G~v-~ti~g~g~~~~~~~~~~~~~~~~~~~P~g-i~~~~~g~~lyi~d 193 (482)
..| +++++++|. ||+++. +.|++++.+ +++ ......+ ..|.. +++++++..+|+.+
T Consensus 41 ~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-----------------~~~~~~~~~s~dg~~l~~~~ 102 (331)
T 3u4y_A 41 DFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG-----------------QSSMADVDITPDDQFAVTVT 102 (331)
T ss_dssp CEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC-----------------SSCCCCEEECTTSSEEEECC
T ss_pred Ccc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccC-----------------CCCccceEECCCCCEEEEec
Confidence 346 999999997 899987 799999874 554 3333221 24666 88888888888554
Q ss_pred CC-C--eEEEEcC-CCccccCCCcCCCCCCCceeecCCccEEEEcCCCC-EEEEEC--Cc-EEEE--cCCCeEEEEEeec
Q psy8782 194 KP-R--IIKTTLG-DGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGS-LFVGDF--NL-IRRI--MTDGTVRTVVRLN 263 (482)
Q Consensus 194 ~~-~--~i~~~~g-~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~-lyv~D~--~~-I~~i--~~~G~v~~~~g~~ 263 (482)
.. + .+..+.- +++... ....-..|.+++++|+|. ||+++. +. |+.+ +++|.+.......
T Consensus 103 ~~~~~~~i~v~d~~~~~~~~-----------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~ 171 (331)
T 3u4y_A 103 GLNHPFNMQSYSFLKNKFIS-----------TIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEF 171 (331)
T ss_dssp CSSSSCEEEEEETTTTEEEE-----------EEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEE
T ss_pred CCCCcccEEEEECCCCCeEE-----------EEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCcc
Confidence 44 2 6666543 333211 111124689999999995 999987 56 5555 4666654332111
Q ss_pred cCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcE----EEEecCCcccCCCCCCccCCCccccccccCC
Q psy8782 264 VTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNV----EPAVGSGERCLPGDEAHCGDGAPARDAKLAY 339 (482)
Q Consensus 264 ~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~----~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~ 339 (482)
...-..|.+++++|++..||+++...++|+.++.. ++.. ..+.. -..
T Consensus 172 ~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~------~~~~~~~~~~~~~-----------------------~~~ 222 (331)
T 3u4y_A 172 ISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQ------NPENITLLNAVGT-----------------------NNL 222 (331)
T ss_dssp ECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECS------STTSCEEEEEEEC-----------------------SSC
T ss_pred ccCCCCccceEECCCCCEEEEEeCCCCeEEEEECC------CCcccceeeeccC-----------------------CCC
Confidence 12234699999999444699999999999999952 3332 22210 146
Q ss_pred cceEEEeCCCc-EEEEECCC--EEEEcC-CCcEE
Q psy8782 340 PKGVAVSADNI-LYFADGTN--IRMVDR-DGIVT 369 (482)
Q Consensus 340 P~giavd~~G~-lyvaD~~n--Ir~i~~-~G~i~ 369 (482)
|.+++++++|. ||++.... |.+++. +|++.
T Consensus 223 ~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~ 256 (331)
T 3u4y_A 223 PGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLS 256 (331)
T ss_dssp CCCEEECTTSSEEEEECSSEEEEEEEETTTTEEE
T ss_pred CceEEECCCCCEEEEEEcCCCEEEEEECCCCcee
Confidence 88999999998 88887654 889986 46663
No 75
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=99.17 E-value=1e-10 Score=117.75 Aligned_cols=125 Identities=13% Similarity=0.133 Sum_probs=89.2
Q ss_pred eecCCccEEEEcCCCC-EEEEEC-CcEEEEcCCCeEEEE-Eeec---cCCCCceeeEEEeCC---CCeEEEEeCC-----
Q psy8782 223 QRLLAPVALATAPDGS-LFVGDF-NLIRRIMTDGTVRTV-VRLN---VTRVAYRYHIAYSPL---DGTLYISDPE----- 288 (482)
Q Consensus 223 ~~l~~P~giavd~~G~-lyv~D~-~~I~~i~~~G~v~~~-~g~~---~~~~~~p~giavd~~---~g~lyVaD~~----- 288 (482)
..|..|.+|+++++|+ |||++. ++|++++++|...+. .+.. ......|.+|+++|+ ++.|||+++.
T Consensus 15 ~~l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g 94 (353)
T 2g8s_A 15 DKLDHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDG 94 (353)
T ss_dssp EEESSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSS
T ss_pred CCCCCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCC
Confidence 4688999999999999 999999 899999999976532 2211 122346899999995 6899999875
Q ss_pred --CCEEEEEecCCccCCCCCc---EEEEe-cCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEECC-----
Q psy8782 289 --SHQILRVKNAMDFSAPDYN---VEPAV-GSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADGT----- 357 (482)
Q Consensus 289 --n~~I~~~~~~~~~~~~~g~---~~~va-G~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~~----- 357 (482)
.++|.|++... .++. .+++. +. +........|.+|+++++|.|||+...
T Consensus 95 ~~~~~v~r~~~~~----~~~~~~~~~~i~~~~----------------p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~ 154 (353)
T 2g8s_A 95 KAGTAVGYGRLSD----DLSKVTDFRTVFRQM----------------PKLSTGNHFGGRLVFDGKGYLFIALGENNQRP 154 (353)
T ss_dssp CEEEEEEEEEECT----TSSBEEEEEEEEECS----------------SCCBSSSCCCCCEEECSSSEEEEEECCTTCGG
T ss_pred CceeEEEEEEECC----CCCCCCceEEEEEEC----------------CCCCCCcccCccEEECCCCcEEEEECCCCCCC
Confidence 56899988532 1122 22222 21 111123457899999999999999643
Q ss_pred ----------CEEEEcCCCc
Q psy8782 358 ----------NIRMVDRDGI 367 (482)
Q Consensus 358 ----------nIr~i~~~G~ 367 (482)
.|.+++++|.
T Consensus 155 ~~q~~~~~~g~I~ri~~dG~ 174 (353)
T 2g8s_A 155 TAQDLDKLQGKLVRLTDQGE 174 (353)
T ss_dssp GGGCTTSCTTEEEEEETTSC
T ss_pred ccCCCCCCCeEEEEECCCCC
Confidence 3889998886
No 76
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.12 E-value=9.2e-08 Score=95.06 Aligned_cols=238 Identities=17% Similarity=0.214 Sum_probs=139.8
Q ss_pred cCCCceEEEEcCCCc-EEEEeC-----CcEE--EEcCC-CeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCe
Q psy8782 118 RLLAPVALATAPDGS-LFVGDF-----NLIR--RIMTD-GTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSN 188 (482)
Q Consensus 118 ~l~~P~glavd~~G~-lyvaD~-----~~Ir--ki~~~-G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~ 188 (482)
....|..|+++|+|. ||+++. +.|+ .++++ |.++.+...... ...|..+.+ +++.
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~--------------~~~p~~~~~--dg~~ 111 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTM--------------GADPCYLTT--NGKN 111 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECS--------------SSCEEEEEE--CSSE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccC--------------CCCcEEEEE--CCCE
Confidence 356789999999998 888876 4664 55665 766554332111 134677777 7778
Q ss_pred EEEEcC-CCeEEEEc--CCCccccCCC-cCCCCCC--CceeecCCccEEEEcCCCC-EEEEEC--CcEEEEc--CCC---
Q psy8782 189 IYLKNK-PRIIKTTL--GDGHQRPLDC-KDCNGEA--GPKQRLLAPVALATAPDGS-LFVGDF--NLIRRIM--TDG--- 254 (482)
Q Consensus 189 lyi~d~-~~~i~~~~--g~G~~~~~~~-~~~~g~~--~~~~~l~~P~giavd~~G~-lyv~D~--~~I~~i~--~~G--- 254 (482)
+|+++. .+.+..+. ..+....... ....+.. ........|.+++++|+|. ||+++. +.|+.++ ..+
T Consensus 112 l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~ 191 (361)
T 3scy_A 112 IVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANAD 191 (361)
T ss_dssp EEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTT
T ss_pred EEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcc
Confidence 998874 45555543 2233211100 0000100 0112234578999999996 999997 5666664 434
Q ss_pred --e-EEEE---EeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCC
Q psy8782 255 --T-VRTV---VRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGD 328 (482)
Q Consensus 255 --~-v~~~---~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gd 328 (482)
+ +... ..........|.+++++|+...||+++...++|+.++. .+|.++.+.....
T Consensus 192 ~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~------~~g~~~~~~~~~~------------ 253 (361)
T 3scy_A 192 NKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRY------ADGMLDEIQTVAA------------ 253 (361)
T ss_dssp TCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEE------ETTEEEEEEEEES------------
T ss_pred cccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEe------cCCceEEeEEEec------------
Confidence 2 3221 11112234568999999944479999988999999985 2455443321100
Q ss_pred CccccccccCCcceEEEeCCCc-EEEEECC--C-EEEE--c-CCCcEEEEE--cCCCCCCCCCcCCCCce-EEecc
Q psy8782 329 GAPARDAKLAYPKGVAVSADNI-LYFADGT--N-IRMV--D-RDGIVTTVI--GNHMHKSHWKPIPCEGT-LNIEE 394 (482)
Q Consensus 329 g~~a~~a~l~~P~giavd~~G~-lyvaD~~--n-Ir~i--~-~~G~i~ti~--G~~~~~~~~~~~~~dg~-l~v~~ 394 (482)
....+..|.+|+++++|. ||+++.. + |+++ + .+|.+..+. .. ...+....+++||. |++..
T Consensus 254 ----~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~ 324 (361)
T 3scy_A 254 ----DTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVAC 324 (361)
T ss_dssp ----CSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEE
T ss_pred ----CCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEE
Confidence 011245688999999997 8899876 4 6664 4 357644332 22 22233455677874 66644
No 77
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.09 E-value=2.3e-08 Score=96.12 Aligned_cols=196 Identities=13% Similarity=0.091 Sum_probs=124.0
Q ss_pred CceEEEEcCCCcEEEEeC----CcEEEEcC-CCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcC-
Q psy8782 121 APVALATAPDGSLFVGDF----NLIRRIMT-DGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNK- 194 (482)
Q Consensus 121 ~P~glavd~~G~lyvaD~----~~Irki~~-~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~- 194 (482)
+|.||+++++|.||++.. +.|+++++ +|++......+.. ..+.|++++ ++.+|+++.
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~---------------~fgeGi~~~--g~~lyv~t~~ 84 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDS---------------YFGEGLTLL--NEKLYQVVWL 84 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTT---------------CCEEEEEEE--TTEEEEEETT
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCC---------------cceEEEEEe--CCEEEEEEec
Confidence 689999999999999974 79999997 4887765433211 123455555 568999874
Q ss_pred CCeEEEEc-CCCccccCCCcCCCCCCCceeecC--CccEEEEcCC-CCEEEEEC-CcEEEEcCCC-eEEEEEeec--cCC
Q psy8782 195 PRIIKTTL-GDGHQRPLDCKDCNGEAGPKQRLL--APVALATAPD-GSLFVGDF-NLIRRIMTDG-TVRTVVRLN--VTR 266 (482)
Q Consensus 195 ~~~i~~~~-g~G~~~~~~~~~~~g~~~~~~~l~--~P~giavd~~-G~lyv~D~-~~I~~i~~~G-~v~~~~g~~--~~~ 266 (482)
.+.+..+. .+++.. +.+. .|.|+.+.+| +.||+++. ++|+.+|+.. ++...+..+ ...
T Consensus 85 ~~~v~viD~~t~~v~--------------~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p 150 (266)
T 2iwa_A 85 KNIGFIYDRRTLSNI--------------KNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHR 150 (266)
T ss_dssp CSEEEEEETTTTEEE--------------EEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEE
T ss_pred CCEEEEEECCCCcEE--------------EEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcc
Confidence 44555443 344321 1111 2344444444 58999998 8999999765 555444332 233
Q ss_pred CCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEe
Q psy8782 267 VAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVS 346 (482)
Q Consensus 267 ~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd 346 (482)
+..|+++.+. +|.||++....+.|.+|+. .+|.+.-..-.+.. ..+...........|.|||++
T Consensus 151 ~~~~nele~~--dg~lyvn~~~~~~V~vID~------~tg~V~~~I~~~g~--------~~~~~~~~~~~~~v~nGIa~~ 214 (266)
T 2iwa_A 151 VIRLNELEYI--NGEVWANIWQTDCIARISA------KDGTLLGWILLPNL--------RKKLIDEGFRDIDVLNGIAWD 214 (266)
T ss_dssp CCCEEEEEEE--TTEEEEEETTSSEEEEEET------TTCCEEEEEECHHH--------HHHHHHTTCTTCCCEEEEEEE
T ss_pred cccceeEEEE--CCEEEEecCCCCeEEEEEC------CCCcEEEEEECCCc--------ccccccccccccCceEEEEEc
Confidence 4578999987 6899999999999999996 46665433321100 000000001224679999999
Q ss_pred CCC-cEEEEECCC--EEEEc
Q psy8782 347 ADN-ILYFADGTN--IRMVD 363 (482)
Q Consensus 347 ~~G-~lyvaD~~n--Ir~i~ 363 (482)
+++ .+||+.... +.+|+
T Consensus 215 ~~~~~lfVTgk~~~~v~~i~ 234 (266)
T 2iwa_A 215 QENKRIFVTGKLWPKLFEIK 234 (266)
T ss_dssp TTTTEEEEEETTCSEEEEEE
T ss_pred CCCCEEEEECCCCCeEEEEE
Confidence 986 599998754 65554
No 78
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=99.09 E-value=3e-09 Score=106.30 Aligned_cols=155 Identities=20% Similarity=0.184 Sum_probs=103.1
Q ss_pred eecCCccEEEEcCCCCEEEEEC--CcEEEEcCC-CeEEEEEeec---cCCCCceeeEEEeCC---CCeEEEEeC--CCCE
Q psy8782 223 QRLLAPVALATAPDGSLFVGDF--NLIRRIMTD-GTVRTVVRLN---VTRVAYRYHIAYSPL---DGTLYISDP--ESHQ 291 (482)
Q Consensus 223 ~~l~~P~giavd~~G~lyv~D~--~~I~~i~~~-G~v~~~~g~~---~~~~~~p~giavd~~---~g~lyVaD~--~n~~ 291 (482)
..|..|++|++.|+|.|||++. ++|++++++ |+...+.... ......|.|||++|+ ++.|||+.+ ..++
T Consensus 29 ~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~ 108 (347)
T 3das_A 29 TGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR 108 (347)
T ss_dssp CCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred cCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence 4588999999999999999998 799999875 6665554332 234567999999983 589999754 5689
Q ss_pred EEEEecCCccC--CCCCcEEEEe-cCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEEC------------
Q psy8782 292 ILRVKNAMDFS--APDYNVEPAV-GSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADG------------ 356 (482)
Q Consensus 292 I~~~~~~~~~~--~~~g~~~~va-G~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~------------ 356 (482)
|.|+.....-. ..-...+++. +.. . .....+..|+++++|.|||+-.
T Consensus 109 v~R~~~~~~~~~~~~~~~~~~i~~~~p----------------~--~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~ 170 (347)
T 3das_A 109 IVRMLYDEKKPSGEQLGAPDTVFRGIP----------------K--GVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRK 170 (347)
T ss_dssp EEEEEBCTTSCTTCCBCCCEEEEEEEC----------------C--CSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTT
T ss_pred EEEEEeCCCCcccccCCCcEEEEEcCC----------------C--CCCccCccccCCCCCCEEEEECCCCCCccccCCC
Confidence 99998642100 0001122222 211 0 1234577899999999999942
Q ss_pred ---CCEEEEcCCCcE--------EEEEcCCCCCCCCCcCCCCceEEeccc
Q psy8782 357 ---TNIRMVDRDGIV--------TTVIGNHMHKSHWKPIPCEGTLNIEEV 395 (482)
Q Consensus 357 ---~nIr~i~~~G~i--------~ti~G~~~~~~~~~~~~~dg~l~v~~~ 395 (482)
+.|.+++++|.+ ..+...+...+....++++|.||+.+.
T Consensus 171 ~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~L~~~d~ 220 (347)
T 3das_A 171 SLGGKILRMTPDGEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQRLFASEF 220 (347)
T ss_dssp CSTTCEEEECTTSSBCTTCSSTTCCEEEBCCSBCCEEEECTTCCEEEEEC
T ss_pred CCCCEEEEEeCCCCccCCCCCCCCeEEeeCCCCcceEEECCCCCEEEEec
Confidence 239999999873 123334444444556666777777664
No 79
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.07 E-value=4.3e-07 Score=88.59 Aligned_cols=267 Identities=11% Similarity=0.061 Sum_probs=156.3
Q ss_pred CCcEEEEeC--CcEEEEcCC-CeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcC-CCeEEEEcC-C
Q psy8782 130 DGSLFVGDF--NLIRRIMTD-GTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNK-PRIIKTTLG-D 204 (482)
Q Consensus 130 ~G~lyvaD~--~~Irki~~~-G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~-~~~i~~~~g-~ 204 (482)
.+.+|+++. +.|+.++.+ |++......+. ..| ++++++++..+|+++. .+.+..+.. +
T Consensus 9 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~----------------~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~ 71 (331)
T 3u4y_A 9 SNFGIVVEQHLRRISFFSTDTLEILNQITLGY----------------DFV-DTAITSDCSNVVVTSDFCQTLVQIETQL 71 (331)
T ss_dssp CCEEEEEEGGGTEEEEEETTTCCEEEEEECCC----------------CEE-EEEECSSSCEEEEEESTTCEEEEEECSS
T ss_pred CCEEEEEecCCCeEEEEeCcccceeeeEEccC----------------Ccc-eEEEcCCCCEEEEEeCCCCeEEEEECCC
Confidence 456899987 899999864 77655443221 235 8888888888998876 555655543 3
Q ss_pred Ccc-ccCCCcCCCCCCCceeecCCccE-EEEcCCCC-EEEEECC----cEEEEcC-CCeEEEEEeeccCCCCceeeEEEe
Q psy8782 205 GHQ-RPLDCKDCNGEAGPKQRLLAPVA-LATAPDGS-LFVGDFN----LIRRIMT-DGTVRTVVRLNVTRVAYRYHIAYS 276 (482)
Q Consensus 205 G~~-~~~~~~~~~g~~~~~~~l~~P~g-iavd~~G~-lyv~D~~----~I~~i~~-~G~v~~~~g~~~~~~~~p~giavd 276 (482)
++. .. ....-..|.. ++++|+|. ||+++.. .|+.++. .+++...+.. ...|.+++++
T Consensus 72 ~~~~~~-----------~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~----~~~~~~~~~s 136 (331)
T 3u4y_A 72 EPPKVV-----------AIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI----PYDAVGIAIS 136 (331)
T ss_dssp SSCEEE-----------EEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC----CTTEEEEEEC
T ss_pred CceeEE-----------ecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC----CCCccceEEC
Confidence 332 10 1223356888 99999997 5543334 8999986 4666555432 2468999999
Q ss_pred CCCCeEEEEeCCCCE-EEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCc-EEEE
Q psy8782 277 PLDGTLYISDPESHQ-ILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNI-LYFA 354 (482)
Q Consensus 277 ~~~g~lyVaD~~n~~-I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~-lyva 354 (482)
|++..||+++...++ |+.++.. .+|.+...... . . ..-..|.+++++++|. ||++
T Consensus 137 pdg~~l~~~~~~~~~~i~~~~~~-----~~g~~~~~~~~--~-------~---------~~~~~~~~~~~spdg~~l~v~ 193 (331)
T 3u4y_A 137 PNGNGLILIDRSSANTVRRFKID-----ADGVLFDTGQE--F-------I---------SGGTRPFNITFTPDGNFAFVA 193 (331)
T ss_dssp TTSSCEEEEEETTTTEEEEEEEC-----TTCCEEEEEEE--E-------E---------CSSSSEEEEEECTTSSEEEEE
T ss_pred CCCCEEEEEecCCCceEEEEEEC-----CCCcEeecCCc--c-------c---------cCCCCccceEECCCCCEEEEE
Confidence 944469999988777 7766642 34443222110 0 0 0123489999999997 9999
Q ss_pred ECCC--EEEEcC-CCc----EEEEEcCCCCCCCCCcCCCCce-EEeccc-cceeEEeecCcceEEecccCCCceEEEeec
Q psy8782 355 DGTN--IRMVDR-DGI----VTTVIGNHMHKSHWKPIPCEGT-LNIEEV-SETMRDIRHTTGWACYGTGDNDHMTLIHCY 425 (482)
Q Consensus 355 D~~n--Ir~i~~-~G~----i~ti~G~~~~~~~~~~~~~dg~-l~v~~~-~~~~~~l~~p~giav~~~g~n~~~~~~~~~ 425 (482)
+... |++++. ++. +.++.. + ..+....+++||. ||+... ...+..++..+ +++..+...
T Consensus 194 ~~~~~~v~v~d~~~~~~~~~~~~~~~-~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~----------~~~~~~~~~ 261 (331)
T 3u4y_A 194 NLIGNSIGILETQNPENITLLNAVGT-N-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLS----------GTLSFVKSF 261 (331)
T ss_dssp ETTTTEEEEEECSSTTSCEEEEEEEC-S-SCCCCEEECTTSSEEEEECSSEEEEEEEETTT----------TEEEEEEEE
T ss_pred eCCCCeEEEEECCCCcccceeeeccC-C-CCCceEEECCCCCEEEEEEcCCCEEEEEECCC----------Cceeeeccc
Confidence 8754 999986 455 444432 2 2233456778885 776543 33444333322 222221111
Q ss_pred eeeeeeeeeeecccceeeeeeEEcCCCc-EEEEeCCCCeeEEe
Q psy8782 426 GVMQDVVTSVFNNSHFLDVHFSHQDQDL-FYFVKELPQKIRDD 467 (482)
Q Consensus 426 g~~~~~~~~~~n~~~~~~~~i~~~~~g~-~yi~d~~n~rIrk~ 467 (482)
... ........+....++++++|. +|++....+.|+.+
T Consensus 262 ~~~----~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~ 300 (331)
T 3u4y_A 262 GHG----LLIDPRPLFGANQMALNKTETKLFISANISRELKVF 300 (331)
T ss_dssp ECC----CCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEE
T ss_pred ccc----cccCCCCcccccceEECCCCCEEEEecCCCCcEEEE
Confidence 000 000011111112467777775 67787777777654
No 80
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.05 E-value=1.6e-08 Score=100.00 Aligned_cols=183 Identities=15% Similarity=0.097 Sum_probs=122.3
Q ss_pred CceEEEEcCCCcEEEEeCCcEEEEcC-CCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcC-----
Q psy8782 121 APVALATAPDGSLFVGDFNLIRRIMT-DGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNK----- 194 (482)
Q Consensus 121 ~P~glavd~~G~lyvaD~~~Irki~~-~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~----- 194 (482)
.|.+++++++|++||+..+.|.++++ +|++..+..... . .....+++++++++| ++|+++.
T Consensus 91 ~v~~i~~~~dg~l~v~~~~gl~~~d~~~g~~~~~~~~~~-~-----------~~~~~~~~i~~d~~G-~l~v~~~~~~~~ 157 (326)
T 2ghs_A 91 MGSALAKISDSKQLIASDDGLFLRDTATGVLTLHAELES-D-----------LPGNRSNDGRMHPSG-ALWIGTMGRKAE 157 (326)
T ss_dssp CEEEEEEEETTEEEEEETTEEEEEETTTCCEEEEECSST-T-----------CTTEEEEEEEECTTS-CEEEEEEETTCC
T ss_pred cceEEEEeCCCeEEEEECCCEEEEECCCCcEEEEeeCCC-C-----------CCCCCCCCEEECCCC-CEEEEeCCCcCC
Confidence 58899999999999998888999987 577766543211 0 001246778888877 5777653
Q ss_pred --CCeEEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcCCCC-EEEEEC--CcEEEEcC---CC-eEE--EEEeec
Q psy8782 195 --PRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGS-LFVGDF--NLIRRIMT---DG-TVR--TVVRLN 263 (482)
Q Consensus 195 --~~~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~-lyv~D~--~~I~~i~~---~G-~v~--~~~g~~ 263 (482)
...+..+. +|+... ....+..|.+++++++|. ||+++. ++|++++. +| .+. ..+..-
T Consensus 158 ~~~~~l~~~~-~g~~~~-----------~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~ 225 (326)
T 2ghs_A 158 TGAGSIYHVA-KGKVTK-----------LFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDS 225 (326)
T ss_dssp TTCEEEEEEE-TTEEEE-----------EEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEEC
T ss_pred CCceEEEEEe-CCcEEE-----------eeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEEC
Confidence 13344444 444321 123456789999999994 999997 68999985 46 421 111111
Q ss_pred cCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceE
Q psy8782 264 VTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGV 343 (482)
Q Consensus 264 ~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~gi 343 (482)
......|.++++|+ +|+|||+...+++|.+++ ++|........ + ...|.++
T Consensus 226 ~~~~~~p~gi~~d~-~G~lwva~~~~~~v~~~d-------~~g~~~~~i~~----------------~-----~~~~~~~ 276 (326)
T 2ghs_A 226 TGIKGGMDGSVCDA-EGHIWNARWGEGAVDRYD-------TDGNHIARYEV----------------P-----GKQTTCP 276 (326)
T ss_dssp TTSSSEEEEEEECT-TSCEEEEEETTTEEEEEC-------TTCCEEEEEEC----------------S-----CSBEEEE
T ss_pred CCCCCCCCeeEECC-CCCEEEEEeCCCEEEEEC-------CCCCEEEEEEC----------------C-----CCCcEEE
Confidence 12335799999998 899999998889999998 45654322211 0 1358899
Q ss_pred EEe-CCC-cEEEEECC
Q psy8782 344 AVS-ADN-ILYFADGT 357 (482)
Q Consensus 344 avd-~~G-~lyvaD~~ 357 (482)
+++ +++ .|||+...
T Consensus 277 af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 277 AFIGPDASRLLVTSAR 292 (326)
T ss_dssp EEESTTSCEEEEEEBC
T ss_pred EEecCCCCEEEEEecC
Confidence 998 664 69998754
No 81
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=99.03 E-value=2.3e-08 Score=98.46 Aligned_cols=164 Identities=15% Similarity=0.090 Sum_probs=112.8
Q ss_pred cCCceEEEecCCCeEEEEc-CCCeEEEEcCC-CccccCCCcCCCCCCCceeecCCccEEEE---cCCCCEEE-EE-----
Q psy8782 175 LSPSGILQKGDGSNIYLKN-KPRIIKTTLGD-GHQRPLDCKDCNGEAGPKQRLLAPVALAT---APDGSLFV-GD----- 243 (482)
Q Consensus 175 ~~P~gi~~~~~g~~lyi~d-~~~~i~~~~g~-G~~~~~~~~~~~g~~~~~~~l~~P~giav---d~~G~lyv-~D----- 243 (482)
..|.++.++...+.+|+++ .++.|.++... +...... ..+..........|.||.+ |++|.|+| ++
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~---~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af 89 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVV---IDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSF 89 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEEC---CTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTT
T ss_pred cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEe---cCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccc
Confidence 4699999999999999999 46777777655 3221111 0110000112235689999 79999998 66
Q ss_pred ---------CCcEEEEcCC----CeEEEEEeecc---C-------CCCceeeEEEeCCCCeEEEEeCCC-CEEEEEecCC
Q psy8782 244 ---------FNLIRRIMTD----GTVRTVVRLNV---T-------RVAYRYHIAYSPLDGTLYISDPES-HQILRVKNAM 299 (482)
Q Consensus 244 ---------~~~I~~i~~~----G~v~~~~g~~~---~-------~~~~p~giavd~~~g~lyVaD~~n-~~I~~~~~~~ 299 (482)
.+.|.+++.+ |+....+.... . .+..+++|++|+ +|++||+|+.. ..|+|++
T Consensus 90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~~~~~I~rV~--- 165 (334)
T 2p9w_A 90 NFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFALGMPAIARVS--- 165 (334)
T ss_dssp CTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEESSCEEEEEC---
T ss_pred cccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC-CCCEEEeCCCCCCeEEEEe---
Confidence 2569999977 88777776421 1 344699999999 99999999999 9999999
Q ss_pred ccCCCCCc-EEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCc-EEEEECCC-EEEEcCC
Q psy8782 300 DFSAPDYN-VEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNI-LYFADGTN-IRMVDRD 365 (482)
Q Consensus 300 ~~~~~~g~-~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~-lyvaD~~n-Ir~i~~~ 365 (482)
++|+ +..+.-. . ........|.||+++++|+ |++++..+ +.++|..
T Consensus 166 ----pdG~~~~~~~~~-~---------------~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 166 ----ADGKTVSTFAWE-S---------------GNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp ----TTSCCEEEEEEC-C---------------CCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred ----CCCCEEeeeeec-C---------------CCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 6776 3322211 0 0112346789999999996 66777754 8888865
No 82
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.01 E-value=8.1e-07 Score=86.45 Aligned_cols=188 Identities=14% Similarity=0.138 Sum_probs=115.3
Q ss_pred CcEEEEeC--CcEEEEcC--CCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCC-CeEEEEcC--
Q psy8782 131 GSLFVGDF--NLIRRIMT--DGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKP-RIIKTTLG-- 203 (482)
Q Consensus 131 G~lyvaD~--~~Irki~~--~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~-~~i~~~~g-- 203 (482)
..||+++. +.|+.++. +|....+..... ...|.++.+++++..+|++... +.+..+.-
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~ 69 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHEGALTLTQVVDV---------------PGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP 69 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEEEEEEC---------------SSCCCCEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred EEEEEeCCCCCeEEEEEECCCCcEEEeeeEec---------------CCCCceEEECCCCCEEEEeecCCCeEEEEEecC
Confidence 45788865 77777755 365433221111 1357889999999889998765 66665321
Q ss_pred -CCccccCCCcCCCCCCCceeecCCccEEEEcCCCC-EEEEEC--CcEEEEcC-CCeEEEEEeeccCCCCceeeEEEeCC
Q psy8782 204 -DGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGS-LFVGDF--NLIRRIMT-DGTVRTVVRLNVTRVAYRYHIAYSPL 278 (482)
Q Consensus 204 -~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~-lyv~D~--~~I~~i~~-~G~v~~~~g~~~~~~~~p~giavd~~ 278 (482)
+|+..... ....-..|..++++++|. ||+++. +.|+.++. +|........ ......|.+++++|+
T Consensus 70 ~~~~~~~~~---------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~s~d 139 (343)
T 1ri6_A 70 DDGALTFAA---------ESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDV-VEGLDGCHSANISPD 139 (343)
T ss_dssp TTCCEEEEE---------EEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEE-ECCCTTBCCCEECTT
T ss_pred CCCceeecc---------ccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccc-ccCCCCceEEEECCC
Confidence 33321100 001112789999999997 888886 56887775 4443322222 122345899999995
Q ss_pred CCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCc-EEEEECC
Q psy8782 279 DGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNI-LYFADGT 357 (482)
Q Consensus 279 ~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~-lyvaD~~ 357 (482)
+..||+++...++|+.++.. .++.+..+...... . . .-..|.+++++++|. ||+++..
T Consensus 140 g~~l~~~~~~~~~v~~~d~~-----~~~~~~~~~~~~~~--------~-~-------~~~~~~~~~~~pdg~~l~~~~~~ 198 (343)
T 1ri6_A 140 NRTLWVPALKQDRICLFTVS-----DDGHLVAQDPAEVT--------T-V-------EGAGPRHMVFHPNEQYAYCVNEL 198 (343)
T ss_dssp SSEEEEEEGGGTEEEEEEEC-----TTSCEEEEEEEEEE--------C-S-------TTCCEEEEEECTTSSEEEEEETT
T ss_pred CCEEEEecCCCCEEEEEEec-----CCCceeeecccccc--------c-C-------CCCCcceEEECCCCCEEEEEeCC
Confidence 55799999888999998852 23554432200000 0 0 013588999999997 8888854
Q ss_pred C--EEEEcC
Q psy8782 358 N--IRMVDR 364 (482)
Q Consensus 358 n--Ir~i~~ 364 (482)
. |++++.
T Consensus 199 ~~~i~~~~~ 207 (343)
T 1ri6_A 199 NSSVDVWEL 207 (343)
T ss_dssp TTEEEEEES
T ss_pred CCEEEEEEe
Confidence 3 888875
No 83
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=98.99 E-value=2.5e-07 Score=90.12 Aligned_cols=234 Identities=16% Similarity=0.159 Sum_probs=137.8
Q ss_pred CCceEEEEcCCCc-EEEEeC--CcEEEEcC---CCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEc
Q psy8782 120 LAPVALATAPDGS-LFVGDF--NLIRRIMT---DGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKN 193 (482)
Q Consensus 120 ~~P~glavd~~G~-lyvaD~--~~Irki~~---~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d 193 (482)
..|.+++++|+|. ||+++. +.|+.++. +|....+..... ...|..+.+++++..+|++.
T Consensus 38 ~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~s~dg~~l~~~~ 102 (343)
T 1ri6_A 38 GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL---------------PGSLTHISTDHQGQFVFVGS 102 (343)
T ss_dssp SCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC---------------SSCCSEEEECTTSSEEEEEE
T ss_pred CCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccccc---------------CCCCcEEEEcCCCCEEEEEe
Confidence 3688899999998 888887 67777543 355443322111 12478899999998898886
Q ss_pred C-CCeEEEEcC-CCccccCCCcCCCCCCCceeecCCccEEEEcCCCC-EEEEEC--CcEEEEcC--CCeEEEEE--eecc
Q psy8782 194 K-PRIIKTTLG-DGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGS-LFVGDF--NLIRRIMT--DGTVRTVV--RLNV 264 (482)
Q Consensus 194 ~-~~~i~~~~g-~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~-lyv~D~--~~I~~i~~--~G~v~~~~--g~~~ 264 (482)
. .+.+..+.- +|...... ........|.+++++|+|. ||+++. +.|+.++. +|++.... ....
T Consensus 103 ~~~~~i~~~d~~~~~~~~~~--------~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~ 174 (343)
T 1ri6_A 103 YNAGNVSVTRLEDGLPVGVV--------DVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTT 174 (343)
T ss_dssp TTTTEEEEEEEETTEEEEEE--------EEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEEC
T ss_pred cCCCeEEEEECCCCcccccc--------ccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeeccccccc
Confidence 5 555554432 22211000 0111223588999999985 999984 78888763 37665433 1112
Q ss_pred CCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEE
Q psy8782 265 TRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVA 344 (482)
Q Consensus 265 ~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~gia 344 (482)
..-..|.+++++|++..||+++...++|..++... .++....+.-... .+ .+ ......|.+++
T Consensus 175 ~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~----~~g~~~~~~~~~~--~~-------~~----~~~~~~~~~i~ 237 (343)
T 1ri6_A 175 VEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKD----PHGNIECVQTLDM--MP-------EN----FSDTRWAADIH 237 (343)
T ss_dssp STTCCEEEEEECTTSSEEEEEETTTTEEEEEESSC----TTSCCEEEEEEEC--SC-------TT----CCSCCCEEEEE
T ss_pred CCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecC----CCCcEEEEeeccc--cC-------cc----ccccCCccceE
Confidence 22347899999994446999998899999998532 1343322111000 00 00 11135688999
Q ss_pred EeCCC-cEEEEECCC--EEEEcCC---CcEEEE--EcCCCCCCCCCcCCCCce-EEecc
Q psy8782 345 VSADN-ILYFADGTN--IRMVDRD---GIVTTV--IGNHMHKSHWKPIPCEGT-LNIEE 394 (482)
Q Consensus 345 vd~~G-~lyvaD~~n--Ir~i~~~---G~i~ti--~G~~~~~~~~~~~~~dg~-l~v~~ 394 (482)
++++| .||++.... |++++.+ +....+ +..+.. +....++++|. |++..
T Consensus 238 ~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~ 295 (343)
T 1ri6_A 238 ITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAG 295 (343)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEEC
T ss_pred ECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEec
Confidence 99998 488888643 7777653 333332 222222 33445566764 55544
No 84
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=98.99 E-value=2.5e-07 Score=92.53 Aligned_cols=241 Identities=9% Similarity=0.009 Sum_probs=130.4
Q ss_pred CCceEEEEcCCCc-EEEEeCCcEEEEcC--CCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCe--EEEEc-
Q psy8782 120 LAPVALATAPDGS-LFVGDFNLIRRIMT--DGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSN--IYLKN- 193 (482)
Q Consensus 120 ~~P~glavd~~G~-lyvaD~~~Irki~~--~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~--lyi~d- 193 (482)
..|..++++|+|. ||+++...|+.++. +|++..+......+ .+..+..+|.| .. +|+++
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g--------~~~~~~~spdg-------~~l~~~~~~~ 104 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGG--------HPRANDADTNT-------RAIFLLAAKQ 104 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCS--------SGGGGCTTSCC-------EEEEEEECSS
T ss_pred CCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCC--------CCccEEECCCC-------CEEEEEEecC
Confidence 4689999999998 88888766766653 67765443211000 12223445544 32 22222
Q ss_pred ------------CCCeEEEE--cCCCcccc-CCCcCCCCCCCceeecCCccEEEEcCCCC-EEEEEC--CcEEEEcC--C
Q psy8782 194 ------------KPRIIKTT--LGDGHQRP-LDCKDCNGEAGPKQRLLAPVALATAPDGS-LFVGDF--NLIRRIMT--D 253 (482)
Q Consensus 194 ------------~~~~i~~~--~g~G~~~~-~~~~~~~g~~~~~~~l~~P~giavd~~G~-lyv~D~--~~I~~i~~--~ 253 (482)
..+.+..+ ..+|+... .... .......|.+++++|||. ||++|. ++|+.++. +
T Consensus 105 ~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~-------~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~ 177 (365)
T 1jof_A 105 PPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNY-------EYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLAS 177 (365)
T ss_dssp TTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEE-------ECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred CcceeccceeecCCceEEEEccCCCCcCcceEeeE-------EeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCC
Confidence 22333322 11222110 0000 001234789999999995 889987 68888875 5
Q ss_pred CeEEEEEeeccC-CCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEE---EecCCcccCCCCCCccCCC
Q psy8782 254 GTVRTVVRLNVT-RVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEP---AVGSGERCLPGDEAHCGDG 329 (482)
Q Consensus 254 G~v~~~~g~~~~-~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~---vaG~g~~~~~g~~~~~gdg 329 (482)
|++..+...... ....|.+++++|+...||+++...++|..++... .+|.... ..... +. .+.+..
T Consensus 178 g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~----~~g~~~~~~~~~~~~----~~--~~~g~~ 247 (365)
T 1jof_A 178 GEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDP----ATHMPVYTHHSFPLI----PP--GIPDRD 247 (365)
T ss_dssp SCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT----TTCCEEEEEEEEESS----CT--TCCCBC
T ss_pred CCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeC----CCCcEEEccceEEcC----CC--CcCCcc
Confidence 776543222111 1356999999994448999998888887776321 2455432 11110 00 000000
Q ss_pred ccccccccCCcceEE-EeCCCc-EEEEEC--C-----CEEEEc--CCCcEEEE---EcCCCCCCCCCcCCC---Cc-eEE
Q psy8782 330 APARDAKLAYPKGVA-VSADNI-LYFADG--T-----NIRMVD--RDGIVTTV---IGNHMHKSHWKPIPC---EG-TLN 391 (482)
Q Consensus 330 ~~a~~a~l~~P~gia-vd~~G~-lyvaD~--~-----nIr~i~--~~G~i~ti---~G~~~~~~~~~~~~~---dg-~l~ 391 (482)
.+.+ ....|.+++ ++++|. ||+++. . .|++++ ++|.+..+ .......+...++++ || .|+
T Consensus 248 ~~~~--~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~ 325 (365)
T 1jof_A 248 PETG--KGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMA 325 (365)
T ss_dssp TTTS--SBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEE
T ss_pred cccc--cccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEE
Confidence 0000 123689999 999995 888864 2 466664 47887653 222222334455555 56 466
Q ss_pred ecc
Q psy8782 392 IEE 394 (482)
Q Consensus 392 v~~ 394 (482)
+..
T Consensus 326 v~~ 328 (365)
T 1jof_A 326 ITD 328 (365)
T ss_dssp EEC
T ss_pred EEE
Confidence 544
No 85
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=98.92 E-value=9.6e-09 Score=106.75 Aligned_cols=151 Identities=19% Similarity=0.235 Sum_probs=104.4
Q ss_pred eecCCccEEEEcCCCCEEEEEC--CcEEEEcC-CCeEEEEEeecc-----CCCCceeeEEEeCC---CCeEEEEeCC---
Q psy8782 223 QRLLAPVALATAPDGSLFVGDF--NLIRRIMT-DGTVRTVVRLNV-----TRVAYRYHIAYSPL---DGTLYISDPE--- 288 (482)
Q Consensus 223 ~~l~~P~giavd~~G~lyv~D~--~~I~~i~~-~G~v~~~~g~~~-----~~~~~p~giavd~~---~g~lyVaD~~--- 288 (482)
..|..|++|+++++|.|||++. .+|+++++ +|+..++..... .....+.|||++|+ ++.|||+++.
T Consensus 24 ~~l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~ 103 (454)
T 1cru_A 24 SNLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNP 103 (454)
T ss_dssp CCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECT
T ss_pred CCCCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEecccc
Confidence 4578999999999999999999 37999986 577766655321 12345779999996 7899999964
Q ss_pred ---------CCEEEEEecCCccCCCCC---cEEEEe-cCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEE
Q psy8782 289 ---------SHQILRVKNAMDFSAPDY---NVEPAV-GSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFAD 355 (482)
Q Consensus 289 ---------n~~I~~~~~~~~~~~~~g---~~~~va-G~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD 355 (482)
.++|.|++... .++ ..+++. +.. ......+.+|+++++|.|||+-
T Consensus 104 ~~~~~~~~~~~~v~r~~~~~----~~~~~~~~~~i~~~~p------------------~~~~H~~~~l~f~pDG~Lyv~~ 161 (454)
T 1cru_A 104 KSTDKELPNQTIIRRYTYNK----STDTLEKPVDLLAGLP------------------SSKDHQSGRLVIGPDQKIYYTI 161 (454)
T ss_dssp TC--CCSCEEEEEEEEEEET----TTTEEEEEEEEEEEEC------------------CCSSCCEEEEEECTTSCEEEEE
T ss_pred CCCccccccccEEEEEEECC----CCCCcCCcEEEEEcCC------------------CCCCCCCCeEeECCCCeEEEEE
Confidence 46899998532 111 123333 110 0124578999999999999984
Q ss_pred C----------------------------------CCEEEEcCCCcE-----------EEEEcCCCCCCCCCcCCCCceE
Q psy8782 356 G----------------------------------TNIRMVDRDGIV-----------TTVIGNHMHKSHWKPIPCEGTL 390 (482)
Q Consensus 356 ~----------------------------------~nIr~i~~~G~i-----------~ti~G~~~~~~~~~~~~~dg~l 390 (482)
. +.|.+++++|.| ..+...+...+...+++.+|.|
T Consensus 162 Gd~~~~~~~~~~~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~RNp~gla~dp~G~L 241 (454)
T 1cru_A 162 GDQGRNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTPNGKL 241 (454)
T ss_dssp CCTTTTSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECTTSCE
T ss_pred CCCCCCCccccccccccccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECCCCcceEEECCCCCE
Confidence 3 128889998873 2344444444545666677888
Q ss_pred Eeccc
Q psy8782 391 NIEEV 395 (482)
Q Consensus 391 ~v~~~ 395 (482)
|+.+.
T Consensus 242 ~~~d~ 246 (454)
T 1cru_A 242 LQSEQ 246 (454)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 88664
No 86
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=98.91 E-value=2.1e-07 Score=93.18 Aligned_cols=137 Identities=14% Similarity=0.174 Sum_probs=97.5
Q ss_pred CCccEEEEcC--CC--CEEEEECC------cEEEEcCCCeEEEEEee-ccCCCCceeeEEEeCCCCeEEEEeC-------
Q psy8782 226 LAPVALATAP--DG--SLFVGDFN------LIRRIMTDGTVRTVVRL-NVTRVAYRYHIAYSPLDGTLYISDP------- 287 (482)
Q Consensus 226 ~~P~giavd~--~G--~lyv~D~~------~I~~i~~~G~v~~~~g~-~~~~~~~p~giavd~~~g~lyVaD~------- 287 (482)
..|.||.+.+ +| .|||++.. .|+++++++...+.+.. ....+..|+++++++ +|.+||++.
T Consensus 112 f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~ 190 (355)
T 3sre_A 112 FNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPY 190 (355)
T ss_dssp CCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCSSHH
T ss_pred eeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC-CCCEEecCCcEeCCcc
Confidence 3899999965 45 69999883 38888888776665543 345688999999999 999999865
Q ss_pred ----------CCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCC-cEEEEEC
Q psy8782 288 ----------ESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADN-ILYFADG 356 (482)
Q Consensus 288 ----------~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G-~lyvaD~ 356 (482)
..++|++++ + +.++.++ ..|..|+|||+++|| .|||+|+
T Consensus 191 ~~~~e~~~~~~~g~vyr~d-------~-~~~~~~~----------------------~~l~~pNGia~spDg~~lYvadt 240 (355)
T 3sre_A 191 LKSWEMHLGLAWSFVTYYS-------P-NDVRVVA----------------------EGFDFANGINISPDGKYVYIAEL 240 (355)
T ss_dssp HHHHHHHTTCCCEEEEEEC-------T-TCCEEEE----------------------EEESSEEEEEECTTSSEEEEEEG
T ss_pred cccchhhccCCccEEEEEE-------C-CeEEEee----------------------cCCcccCcceECCCCCEEEEEeC
Confidence 246788887 3 3444443 227889999999998 6999998
Q ss_pred CC--EEEEc--CCCcEEE--EEcCCCCCCCCCcCCC-CceEEecc
Q psy8782 357 TN--IRMVD--RDGIVTT--VIGNHMHKSHWKPIPC-EGTLNIEE 394 (482)
Q Consensus 357 ~n--Ir~i~--~~G~i~t--i~G~~~~~~~~~~~~~-dg~l~v~~ 394 (482)
.. |++++ .+|.++. ++..+ ..+.+..++. +|.++++.
T Consensus 241 ~~~~I~~~~~~~~g~l~~~~~~~~~-g~PDGi~vD~e~G~lwva~ 284 (355)
T 3sre_A 241 LAHKIHVYEKHANWTLTPLRVLSFD-TLVDNISVDPVTGDLWVGC 284 (355)
T ss_dssp GGTEEEEEEECTTSCEEEEEEEECS-SEEEEEEECTTTCCEEEEE
T ss_pred CCCeEEEEEECCCCcEecCEEEeCC-CCCceEEEeCCCCcEEEEe
Confidence 65 88776 4676532 23221 2233466778 58898854
No 87
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.86 E-value=4e-07 Score=86.90 Aligned_cols=201 Identities=14% Similarity=0.156 Sum_probs=122.0
Q ss_pred ccCCceEEEecCCCeEEE-EcCCCeEEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC--CcEEEE
Q psy8782 174 SLSPSGILQKGDGSNIYL-KNKPRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF--NLIRRI 250 (482)
Q Consensus 174 ~~~P~gi~~~~~g~~lyi-~d~~~~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~--~~I~~i 250 (482)
..+++|++++++++.||+ .|.+..|..+.-+|.....- ....+..|.||+++++|.++|++. +++..+
T Consensus 26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i---------~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~ 96 (255)
T 3qqz_A 26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTI---------PLDFVKDLETIEYIGDNQFVISDERDYAIYVI 96 (255)
T ss_dssp CSCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEE---------ECSSCSSEEEEEECSTTEEEEEETTTTEEEEE
T ss_pred ccCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEE---------ecCCCCChHHeEEeCCCEEEEEECCCCcEEEE
Confidence 356899999999989997 56777777776666542100 012235799999999999999986 677766
Q ss_pred --cCCCeEE--EEEeecc---CCCCceeeEEEeCCCCeEEEEeCCCC-EEEEEecCCccCCCCCcEEEEecCCcccCCCC
Q psy8782 251 --MTDGTVR--TVVRLNV---TRVAYRYHIAYSPLDGTLYISDPESH-QILRVKNAMDFSAPDYNVEPAVGSGERCLPGD 322 (482)
Q Consensus 251 --~~~G~v~--~~~g~~~---~~~~~p~giavd~~~g~lyVaD~~n~-~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~ 322 (482)
+.++.+. ....... ..-....|||++|..+.||++..... +|+.++... ....++.+- ...
T Consensus 97 ~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~----~~~~l~i~~-~~~------ 165 (255)
T 3qqz_A 97 SLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLL----SSNELHISK-DKA------ 165 (255)
T ss_dssp EECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTT----CSSCCEEEE-CHH------
T ss_pred EcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccc----cCCceeeec-chh------
Confidence 4566532 3332211 01112389999996679999876554 788887210 011122211 000
Q ss_pred CCccCCCccccccccCCcceEEEeCC-CcEEEEECCC--EEEEcCCCcEEEEEcCCCC---------CCCCCcCCCCceE
Q psy8782 323 EAHCGDGAPARDAKLAYPKGVAVSAD-NILYFADGTN--IRMVDRDGIVTTVIGNHMH---------KSHWKPIPCEGTL 390 (482)
Q Consensus 323 ~~~~gdg~~a~~a~l~~P~giavd~~-G~lyvaD~~n--Ir~i~~~G~i~ti~G~~~~---------~~~~~~~~~dg~l 390 (482)
......+..|.+|++|+. |.+||....+ +-.+|.+|.+.-..-.... .+.+.+++.+|+|
T Consensus 166 --------~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~l 237 (255)
T 3qqz_A 166 --------LQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNI 237 (255)
T ss_dssp --------HHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCE
T ss_pred --------hccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCE
Confidence 000123567899999984 7899876655 8899999997655533311 2224455566666
Q ss_pred EeccccceeEEe
Q psy8782 391 NIEEVSETMRDI 402 (482)
Q Consensus 391 ~v~~~~~~~~~l 402 (482)
||..-.+...++
T Consensus 238 yIvsE~n~~y~f 249 (255)
T 3qqz_A 238 YIVSEPNRFYRF 249 (255)
T ss_dssp EEEETTTEEEEE
T ss_pred EEEcCCceEEEE
Confidence 665444444444
No 88
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=98.86 E-value=2.1e-07 Score=96.78 Aligned_cols=33 Identities=27% Similarity=0.476 Sum_probs=28.6
Q ss_pred ccCCCceEEEEcCCCc--EEEEeC-CcEEEEcCCCe
Q psy8782 117 QRLLAPVALATAPDGS--LFVGDF-NLIRRIMTDGT 149 (482)
Q Consensus 117 ~~l~~P~glavd~~G~--lyvaD~-~~Irki~~~G~ 149 (482)
..|..|++|++.|+|. |||++. .+|++++++|.
T Consensus 11 ~gL~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~ 46 (463)
T 2wg3_C 11 SGLRQPVGALHSGDGSQRLFILEKEGYVKILTPEGE 46 (463)
T ss_dssp EEESSEEEEECCSSSSCCEEEEETTTEEEEECTTSC
T ss_pred cCCCCceEEEECCCCCeEEEEEeCCceEEEEeCCCC
Confidence 3588999999999996 999998 88999987764
No 89
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.84 E-value=4.4e-07 Score=88.45 Aligned_cols=217 Identities=18% Similarity=0.208 Sum_probs=129.5
Q ss_pred eEEEEcCCCcEEEEeCCcEEEEcCCCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCCCeEEEEc
Q psy8782 123 VALATAPDGSLFVGDFNLIRRIMTDGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKPRIIKTTL 202 (482)
Q Consensus 123 ~glavd~~G~lyvaD~~~Irki~~~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~~~i~~~~ 202 (482)
..++++++|.|||+..+ |.+++++|+........ . .. .....+. ++.+|+....+.+..+.
T Consensus 63 ~~~~~~~~g~l~v~t~~-l~~~d~~g~~~~~~~~~-------~------~~---~~~~~~~--~~~l~v~t~~~~l~~~d 123 (330)
T 3hxj_A 63 CRPSIGKDGTIYFGSDK-VYAINPDGTEKWRFDTK-------K------AI---VSDFTIF--EDILYVTSMDGHLYAIN 123 (330)
T ss_dssp ECCEETTTTEECCSSCE-EEEECCCGGGGGGSCC---------------------CCEEEE--TTEEEEECTTSEEEEEC
T ss_pred cceEEecCCcEEEecCc-EEEECCCCcEEEEEECC-------C------Cc---ccCceEE--CCEEEEEecCCEEEEEc
Confidence 56788899999998778 88898776532100000 0 00 0112222 45777776555555554
Q ss_pred CCCccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC-CcEEEEcCCCeEEEEEeeccCCCCceeeEEEeCCCCe
Q psy8782 203 GDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF-NLIRRIMTDGTVRTVVRLNVTRVAYRYHIAYSPLDGT 281 (482)
Q Consensus 203 g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~-~~I~~i~~~G~v~~~~g~~~~~~~~p~giavd~~~g~ 281 (482)
..|+..... ...-.....++++++|.||++.. +.|.+++++|+......... .....+++++ ++.
T Consensus 124 ~~g~~~~~~----------~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~g~~~~~~~~~~---~~~~~~~~d~-~g~ 189 (330)
T 3hxj_A 124 TDGTEKWRF----------KTKKAIYATPIVSEDGTIYVGSNDNYLYAINPDGTEKWRFKTND---AITSAASIGK-DGT 189 (330)
T ss_dssp TTSCEEEEE----------ECSSCCCSCCEECTTSCEEEECTTSEEEEECTTSCEEEEEECSS---CCCSCCEECT-TCC
T ss_pred CCCCEEEEE----------cCCCceeeeeEEcCCCEEEEEcCCCEEEEECCCCCEeEEEecCC---CceeeeEEcC-CCE
Confidence 434331100 00001234567888999999998 89999999887765544321 2345577887 899
Q ss_pred EEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEECCC-EE
Q psy8782 282 LYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADGTN-IR 360 (482)
Q Consensus 282 lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~~n-Ir 360 (482)
||++. +.|++++ ++|......-. . -.....+++|++|.||++...+ +.
T Consensus 190 l~v~t---~~l~~~d-------~~g~~~~~~~~--------------~-------~~~~~~~~~~~~g~l~v~t~~~gl~ 238 (330)
T 3hxj_A 190 IYFGS---DKVYAIN-------PDGTEKWNFYA--------------G-------YWTVTRPAISEDGTIYVTSLDGHLY 238 (330)
T ss_dssp EEEES---SSEEEEC-------TTSCEEEEECC--------------S-------SCCCSCCEECTTSCEEEEETTTEEE
T ss_pred EEEEe---CEEEEEC-------CCCcEEEEEcc--------------C-------CcceeceEECCCCeEEEEcCCCeEE
Confidence 99998 7899998 35553322210 0 1346678999999999998755 88
Q ss_pred EEcCCCcEEEEEcCCCCCCCCCcCCCCceEEeccccceeEEee
Q psy8782 361 MVDRDGIVTTVIGNHMHKSHWKPIPCEGTLNIEEVSETMRDIR 403 (482)
Q Consensus 361 ~i~~~G~i~ti~G~~~~~~~~~~~~~dg~l~v~~~~~~~~~l~ 403 (482)
+++++|.................++.+|.|++......+..++
T Consensus 239 ~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d 281 (330)
T 3hxj_A 239 AINPDGTEKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAIN 281 (330)
T ss_dssp EECTTSCEEEEEECSSCCCSCCEECTTSCEEEECTTCEEEEEC
T ss_pred EECCCCCEeEEeeCCCCccccceEcCCCeEEEecCCCCEEEEC
Confidence 9999887654443332211222334567787765433344343
No 90
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.82 E-value=9.4e-07 Score=84.21 Aligned_cols=186 Identities=13% Similarity=0.123 Sum_probs=119.1
Q ss_pred ceEEEEcCCCcEEEEeC----CcEEEEcCC-CeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcC-C
Q psy8782 122 PVALATAPDGSLFVGDF----NLIRRIMTD-GTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNK-P 195 (482)
Q Consensus 122 P~glavd~~G~lyvaD~----~~Irki~~~-G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~-~ 195 (482)
-.||.++ ++.||++.. .+|+++++. |++..-....... ...|+++ +++.||+.+- +
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~---------------FgeGit~--~g~~ly~ltw~~ 106 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRY---------------FGEGISD--WKDKIVGLTWKN 106 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTC---------------CEEEEEE--ETTEEEEEESSS
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCcc---------------ceeEEEE--eCCEEEEEEeeC
Confidence 3899998 789999986 389999974 8877544332111 1234554 4668998863 3
Q ss_pred CeEEEEc-CCCccccCCCcCCCCCCCceeecC---CccEEEEcCCCCEEEEEC-CcEEEEcCC-CeEEEEEeec--cCCC
Q psy8782 196 RIIKTTL-GDGHQRPLDCKDCNGEAGPKQRLL---APVALATAPDGSLFVGDF-NLIRRIMTD-GTVRTVVRLN--VTRV 267 (482)
Q Consensus 196 ~~i~~~~-g~G~~~~~~~~~~~g~~~~~~~l~---~P~giavd~~G~lyv~D~-~~I~~i~~~-G~v~~~~g~~--~~~~ 267 (482)
+.+..+. .+.+.. +++. .++|++.|. +.||++|. ++|+++||. .++...+... ...+
T Consensus 107 ~~v~v~D~~t~~~~--------------~ti~~~~eG~glt~dg-~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~ 171 (262)
T 3nol_A 107 GLGFVWNIRNLRQV--------------RSFNYDGEGWGLTHND-QYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEEL 171 (262)
T ss_dssp SEEEEEETTTCCEE--------------EEEECSSCCCCEEECS-SCEEECCSSSEEEEECTTTCSEEEEEECEETTEEC
T ss_pred CEEEEEECccCcEE--------------EEEECCCCceEEecCC-CEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccc
Confidence 4444433 333321 1111 456777664 68999997 899999986 5665554332 2334
Q ss_pred CceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeC
Q psy8782 268 AYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSA 347 (482)
Q Consensus 268 ~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~ 347 (482)
..++.+... +|.||++....+.|.+||. .+|.+.-..-... +.+ .... ......-|+|||+|+
T Consensus 172 ~~lNELe~~--~G~lyan~w~~~~I~vIDp------~tG~V~~~Id~~~-L~~----~~~~----~~~~~~vlNGIA~dp 234 (262)
T 3nol_A 172 PELNELEWV--DGEIFANVWQTNKIVRIDP------ETGKVTGIIDLNG-ILA----EAGP----LPSPIDVLNGIAWDK 234 (262)
T ss_dssp CCEEEEEEE--TTEEEEEETTSSEEEEECT------TTCBEEEEEECTT-GGG----GSCS----CCSSCCCEEEEEEET
T ss_pred cccceeEEE--CCEEEEEEccCCeEEEEEC------CCCcEEEEEECCc-Ccc----cccc----ccCcCCceEEEEEcC
Confidence 567777775 7899999999999999996 5787665553221 000 0000 112356799999998
Q ss_pred C-CcEEEEECC
Q psy8782 348 D-NILYFADGT 357 (482)
Q Consensus 348 ~-G~lyvaD~~ 357 (482)
+ +.|||+.-.
T Consensus 235 ~~~~lfVTGK~ 245 (262)
T 3nol_A 235 EHHRLFVTGKL 245 (262)
T ss_dssp TTTEEEEEETT
T ss_pred CCCEEEEECCC
Confidence 6 468888753
No 91
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=98.81 E-value=7.2e-06 Score=81.76 Aligned_cols=226 Identities=23% Similarity=0.311 Sum_probs=146.0
Q ss_pred CceEEEEcCCCc-EEEEeC--CcEEEEcC-CCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcC-C
Q psy8782 121 APVALATAPDGS-LFVGDF--NLIRRIMT-DGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNK-P 195 (482)
Q Consensus 121 ~P~glavd~~G~-lyvaD~--~~Irki~~-~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~-~ 195 (482)
.|.++++.++|. ||++.. +.|+.++. +|++......+ ..+.++.+.+++..++++.. .
T Consensus 33 ~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~-----------------~~v~~~~~spdg~~l~~~~~~~ 95 (391)
T 1l0q_A 33 NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG-----------------SSPQGVAVSPDGKQVYVTNMAS 95 (391)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS-----------------SSEEEEEECTTSSEEEEEETTT
T ss_pred CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECC-----------------CCccceEECCCCCEEEEEECCC
Confidence 478999999997 678875 88999986 57765544321 13678888888888888764 3
Q ss_pred CeEEEEcC-CCccccCCCcCCCCCCCceeecCCccEEEEcCCCC-EEEEEC--CcEEEEcC-CCeEEEEEeeccCCCCce
Q psy8782 196 RIIKTTLG-DGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGS-LFVGDF--NLIRRIMT-DGTVRTVVRLNVTRVAYR 270 (482)
Q Consensus 196 ~~i~~~~g-~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~-lyv~D~--~~I~~i~~-~G~v~~~~g~~~~~~~~p 270 (482)
+.+..+.- +++... ....-..|.++++.++|. ||++.. +.|+.++. +++....+.. -..|
T Consensus 96 ~~v~v~d~~~~~~~~-----------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~----~~~~ 160 (391)
T 1l0q_A 96 STLSVIDTTSNTVAG-----------TVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV----GRSP 160 (391)
T ss_dssp TEEEEEETTTTEEEE-----------EEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC----CSSE
T ss_pred CEEEEEECCCCeEEE-----------EEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEec----CCCc
Confidence 66666543 333211 111123578999999996 778877 78999985 5666655533 2357
Q ss_pred eeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCc
Q psy8782 271 YHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNI 350 (482)
Q Consensus 271 ~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~ 350 (482)
..++++|++..||++....+.|+.++. .++........ -..|.+++++++|.
T Consensus 161 ~~~~~~~dg~~l~~~~~~~~~v~~~d~------~~~~~~~~~~~----------------------~~~~~~~~~~~~g~ 212 (391)
T 1l0q_A 161 KGIAVTPDGTKVYVANFDSMSISVIDT------VTNSVIDTVKV----------------------EAAPSGIAVNPEGT 212 (391)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEET------TTTEEEEEEEC----------------------SSEEEEEEECTTSS
T ss_pred ceEEECCCCCEEEEEeCCCCEEEEEEC------CCCeEEEEEec----------------------CCCccceEECCCCC
Confidence 899999955578999999999999995 33433322210 12478899999885
Q ss_pred -EEEEEC---CC-EEEEcC-CCcEEEEEcCCCCCCCCCcCCCCc-eEEecc-ccceeEEeecCcc
Q psy8782 351 -LYFADG---TN-IRMVDR-DGIVTTVIGNHMHKSHWKPIPCEG-TLNIEE-VSETMRDIRHTTG 407 (482)
Q Consensus 351 -lyvaD~---~n-Ir~i~~-~G~i~ti~G~~~~~~~~~~~~~dg-~l~v~~-~~~~~~~l~~p~g 407 (482)
||++.. .+ |+++|. ++.....+..+. .+....++++| .|++.. ...+++.++..++
T Consensus 213 ~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~ 276 (391)
T 1l0q_A 213 KAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATN 276 (391)
T ss_dssp EEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred EEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCC
Confidence 777763 33 999986 455444443322 12234556777 465553 3445555555444
No 92
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=98.78 E-value=4.2e-06 Score=82.94 Aligned_cols=219 Identities=15% Similarity=0.104 Sum_probs=127.8
Q ss_pred CCceEEEEcCCCcEEEEeC--CcEEEEcC--CCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcC-
Q psy8782 120 LAPVALATAPDGSLFVGDF--NLIRRIMT--DGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNK- 194 (482)
Q Consensus 120 ~~P~glavd~~G~lyvaD~--~~Irki~~--~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~- 194 (482)
..|..+++ ....||+++. +.|+.++. +|.+..+...-. +.+. ++.........|.++++++++..+|+++.
T Consensus 100 ~~p~~~~~-dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~--~~g~-~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 175 (361)
T 3scy_A 100 ADPCYLTT-NGKNIVTANYSGGSITVFPIGQDGALLPASDVIE--FKGS-GPDKERQTMPHLHCVRITPDGKYLLADDLG 175 (361)
T ss_dssp SCEEEEEE-CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEE--CCCC-CSCTTTCSSCCEEEEEECTTSSEEEEEETT
T ss_pred CCcEEEEE-CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEE--ccCC-CCCccccCCCcceEEEECCCCCEEEEEeCC
Confidence 47899999 3345899986 66776653 454332211000 0000 00000111234678999999988999875
Q ss_pred CCeEEEEc--C-CC----c-cccC-CCcCCCCCCCceeecCCccEEEEcCCCC-EEEEEC--CcEEEEcC-CCeEEEEEe
Q psy8782 195 PRIIKTTL--G-DG----H-QRPL-DCKDCNGEAGPKQRLLAPVALATAPDGS-LFVGDF--NLIRRIMT-DGTVRTVVR 261 (482)
Q Consensus 195 ~~~i~~~~--g-~G----~-~~~~-~~~~~~g~~~~~~~l~~P~giavd~~G~-lyv~D~--~~I~~i~~-~G~v~~~~g 261 (482)
...+..+. . .+ + .... .. .......-..|.+++++|+|. ||+++. +.|+.++. +|++..+..
T Consensus 176 ~~~v~v~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~ 250 (361)
T 3scy_A 176 TDQIHKFNINPNANADNKEKFLTKGTP-----EAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQT 250 (361)
T ss_dssp TTEEEEEEECTTCCTTTCCCCEEEEEE-----EEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEE
T ss_pred CCEEEEEEEcCCCCcccccceeecccc-----cceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEE
Confidence 45555442 1 22 1 1000 00 000011124688999999996 899995 78888874 565543322
Q ss_pred --eccCCCCceeeEEEeCCCCeEEEEeCC-CCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccC
Q psy8782 262 --LNVTRVAYRYHIAYSPLDGTLYISDPE-SHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLA 338 (482)
Q Consensus 262 --~~~~~~~~p~giavd~~~g~lyVaD~~-n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~ 338 (482)
........|.+|+++|++..||+++.. .++|..++... .+|..+.+.-. .. -.
T Consensus 251 ~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~----~~g~~~~~~~~-----------~~---------g~ 306 (361)
T 3scy_A 251 VAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDE----TNGTLTKVGYQ-----------LT---------GI 306 (361)
T ss_dssp EESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECT----TTCCEEEEEEE-----------EC---------SS
T ss_pred EecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcC----CCCcEEEeeEe-----------cC---------CC
Confidence 223345678999999944579999998 78888876421 24554443310 00 13
Q ss_pred CcceEEEeCCCc-EEEEECCC--EEE--EcC-CCcEEEE
Q psy8782 339 YPKGVAVSADNI-LYFADGTN--IRM--VDR-DGIVTTV 371 (482)
Q Consensus 339 ~P~giavd~~G~-lyvaD~~n--Ir~--i~~-~G~i~ti 371 (482)
.|.+++++++|. ||+++... |++ +|+ +|.+..+
T Consensus 307 ~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~ 345 (361)
T 3scy_A 307 HPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDI 345 (361)
T ss_dssp CCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEEC
T ss_pred CCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeec
Confidence 689999999997 89998543 555 664 5666543
No 93
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=98.73 E-value=3.3e-05 Score=76.85 Aligned_cols=181 Identities=21% Similarity=0.314 Sum_probs=116.6
Q ss_pred cEEEEeC--CcEEEEcCC-CeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEc-CCCeEEEEcC-CCc
Q psy8782 132 SLFVGDF--NLIRRIMTD-GTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKN-KPRIIKTTLG-DGH 206 (482)
Q Consensus 132 ~lyvaD~--~~Irki~~~-G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d-~~~~i~~~~g-~G~ 206 (482)
.+|++.. +.|+.++.+ ++........ ..|..+.+.+++..+|++. .++.+..+.. +++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~-----------------~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~ 65 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVG-----------------SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN 65 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECS-----------------SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecC-----------------CCcceEEECCCCCEEEEECCCCCeEEEEECCCCe
Confidence 3566665 677777653 5554433221 2357788888888887765 4566666543 343
Q ss_pred cccCCCcCCCCCCCceeecCCccEEEEcCCCC-EEEEEC--CcEEEEcCC-CeEEEEEeeccCCCCceeeEEEeCCCCeE
Q psy8782 207 QRPLDCKDCNGEAGPKQRLLAPVALATAPDGS-LFVGDF--NLIRRIMTD-GTVRTVVRLNVTRVAYRYHIAYSPLDGTL 282 (482)
Q Consensus 207 ~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~-lyv~D~--~~I~~i~~~-G~v~~~~g~~~~~~~~p~giavd~~~g~l 282 (482)
... ....-..|.++++.|+|. ||++.. +.|+.++.. ++....+.. -..+.+++++|++..|
T Consensus 66 ~~~-----------~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~----~~~~~~~~~s~dg~~l 130 (391)
T 1l0q_A 66 VIA-----------TVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT----GKSPLGLALSPDGKKL 130 (391)
T ss_dssp EEE-----------EEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC----SSSEEEEEECTTSSEE
T ss_pred EEE-----------EEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC----CCCcceEEECCCCCEE
Confidence 321 001112688999999986 778886 789999865 566555432 2358999999944568
Q ss_pred EEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCc-EEEEECCC--E
Q psy8782 283 YISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNI-LYFADGTN--I 359 (482)
Q Consensus 283 yVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~-lyvaD~~n--I 359 (482)
|++....+.|+.++. .++........ -..|..++++++|. ||++.... |
T Consensus 131 ~~~~~~~~~v~~~d~------~~~~~~~~~~~----------------------~~~~~~~~~~~dg~~l~~~~~~~~~v 182 (391)
T 1l0q_A 131 YVTNNGDKTVSVINT------VTKAVINTVSV----------------------GRSPKGIAVTPDGTKVYVANFDSMSI 182 (391)
T ss_dssp EEEETTTTEEEEEET------TTTEEEEEEEC----------------------CSSEEEEEECTTSSEEEEEETTTTEE
T ss_pred EEEeCCCCEEEEEEC------CCCcEEEEEec----------------------CCCcceEEECCCCCEEEEEeCCCCEE
Confidence 899999999999995 34443322210 12468899999985 67886654 9
Q ss_pred EEEcC-CCcEEEEE
Q psy8782 360 RMVDR-DGIVTTVI 372 (482)
Q Consensus 360 r~i~~-~G~i~ti~ 372 (482)
+++|. .+.....+
T Consensus 183 ~~~d~~~~~~~~~~ 196 (391)
T 1l0q_A 183 SVIDTVTNSVIDTV 196 (391)
T ss_dssp EEEETTTTEEEEEE
T ss_pred EEEECCCCeEEEEE
Confidence 99986 45554444
No 94
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.72 E-value=6.6e-06 Score=79.99 Aligned_cols=205 Identities=19% Similarity=0.229 Sum_probs=125.3
Q ss_pred CCcEEEEeC-CcEEEEcCCCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCCCeEEEEcCCCccc
Q psy8782 130 DGSLFVGDF-NLIRRIMTDGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKPRIIKTTLGDGHQR 208 (482)
Q Consensus 130 ~G~lyvaD~-~~Irki~~~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~~~i~~~~g~G~~~ 208 (482)
+|.||++.. +.|.+++++|+..-....... ....++.+.++ ++|+....+.+..+...|+..
T Consensus 107 ~~~l~v~t~~~~l~~~d~~g~~~~~~~~~~~----------------~~~~~~~~~~g-~l~vgt~~~~l~~~d~~g~~~ 169 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTDGTEKWRFKTKKA----------------IYATPIVSEDG-TIYVGSNDNYLYAINPDGTEK 169 (330)
T ss_dssp TTEEEEECTTSEEEEECTTSCEEEEEECSSC----------------CCSCCEECTTS-CEEEECTTSEEEEECTTSCEE
T ss_pred CCEEEEEecCCEEEEEcCCCCEEEEEcCCCc----------------eeeeeEEcCCC-EEEEEcCCCEEEEECCCCCEe
Confidence 899999986 789999988775433322110 01222333333 566665545454444334321
Q ss_pred cCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEECCcEEEEcCCCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCC
Q psy8782 209 PLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDFNLIRRIMTDGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPE 288 (482)
Q Consensus 209 ~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~~~I~~i~~~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~ 288 (482)
.. ....-.....+++|++|.||++. +.|.+++++|+....... .......+++++ +|.||++..
T Consensus 170 ~~----------~~~~~~~~~~~~~d~~g~l~v~t-~~l~~~d~~g~~~~~~~~---~~~~~~~~~~~~-~g~l~v~t~- 233 (330)
T 3hxj_A 170 WR----------FKTNDAITSAASIGKDGTIYFGS-DKVYAINPDGTEKWNFYA---GYWTVTRPAISE-DGTIYVTSL- 233 (330)
T ss_dssp EE----------EECSSCCCSCCEECTTCCEEEES-SSEEEECTTSCEEEEECC---SSCCCSCCEECT-TSCEEEEET-
T ss_pred EE----------EecCCCceeeeEEcCCCEEEEEe-CEEEEECCCCcEEEEEcc---CCcceeceEECC-CCeEEEEcC-
Confidence 10 00001134567889999999999 999999998876544332 123466788988 889999976
Q ss_pred CCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEECCC-EEEEcCCCc
Q psy8782 289 SHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADGTN-IRMVDRDGI 367 (482)
Q Consensus 289 n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~~n-Ir~i~~~G~ 367 (482)
++.|++++ ++|......... . ..+..++++++|.|||+.... +.+++++|.
T Consensus 234 ~~gl~~~~-------~~g~~~~~~~~~------------~---------~~~~~~~~~~~g~l~v~t~~ggl~~~d~~g~ 285 (330)
T 3hxj_A 234 DGHLYAIN-------PDGTEKWRFKTG------------K---------RIESSPVIGNTDTIYFGSYDGHLYAINPDGT 285 (330)
T ss_dssp TTEEEEEC-------TTSCEEEEEECS------------S---------CCCSCCEECTTSCEEEECTTCEEEEECTTSC
T ss_pred CCeEEEEC-------CCCCEeEEeeCC------------C---------CccccceEcCCCeEEEecCCCCEEEECCCCc
Confidence 56788887 455533222110 0 123357788899999998874 999999998
Q ss_pred EEEEEcCCCCCCCCCcCCCCceEEeccc
Q psy8782 368 VTTVIGNHMHKSHWKPIPCEGTLNIEEV 395 (482)
Q Consensus 368 i~ti~G~~~~~~~~~~~~~dg~l~v~~~ 395 (482)
+......+.........+.+|.||+...
T Consensus 286 ~~~~~~~~~~~~~~~~~d~~g~l~~gt~ 313 (330)
T 3hxj_A 286 EKWNFETGSWIIATPVIDENGTIYFGTR 313 (330)
T ss_dssp EEEEEECSSCCCSCCEECTTCCEEEECT
T ss_pred EEEEEEcCCccccceEEcCCCEEEEEcC
Confidence 7655544322222223346778887553
No 95
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=98.69 E-value=1.6e-05 Score=84.32 Aligned_cols=225 Identities=10% Similarity=0.085 Sum_probs=135.3
Q ss_pred ceEEEEcCCCc-EEEEeC-CcEEEEcC---CCeEEEEEeeCCCcccCCCccccccccccCCceEEEec----CCCeEEEE
Q psy8782 122 PVALATAPDGS-LFVGDF-NLIRRIMT---DGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKG----DGSNIYLK 192 (482)
Q Consensus 122 P~glavd~~G~-lyvaD~-~~Irki~~---~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~----~g~~lyi~ 192 (482)
|++++++|+|. ||+++. +.|+.++. ++++...+..+ ..|.++++++ ++..+|++
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g-----------------~~p~~va~sp~~~~dg~~l~v~ 243 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG-----------------IEARSVESSKFKGYEDRYTIAG 243 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC-----------------SEEEEEEECCSTTCTTTEEEEE
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecC-----------------CCcceEEeCCCcCCCCCEEEEE
Confidence 89999999986 888888 89999987 45544323221 2488999999 99999998
Q ss_pred cC-CCeEEEEc-CCCcccc-CCCcCCCCCCCceeecCCccEEEEcCCC-CEEEEEC--CcEEEEcCC-CeEE--EEEeec
Q psy8782 193 NK-PRIIKTTL-GDGHQRP-LDCKDCNGEAGPKQRLLAPVALATAPDG-SLFVGDF--NLIRRIMTD-GTVR--TVVRLN 263 (482)
Q Consensus 193 d~-~~~i~~~~-g~G~~~~-~~~~~~~g~~~~~~~l~~P~giavd~~G-~lyv~D~--~~I~~i~~~-G~v~--~~~g~~ 263 (482)
+. ++.+.++. .+++... ............-..-..|.+|++.+++ .+|++.. +.|..++.. ++.. +.+.
T Consensus 244 ~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-- 321 (543)
T 1nir_A 244 AYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-- 321 (543)
T ss_dssp EEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE--
T ss_pred EccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec--
Confidence 74 56666553 2333211 0000000000000011257789999876 5666665 789998853 2211 1222
Q ss_pred cCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCc-ce
Q psy8782 264 VTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYP-KG 342 (482)
Q Consensus 264 ~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P-~g 342 (482)
. -.+|.+++++|++..||++....+.|..++. .+|++....-.+. .-+| .+
T Consensus 322 ~--~~~~~~~~~spdg~~l~va~~~~~~v~v~D~------~tg~l~~~i~~g~--------------------~ph~g~g 373 (543)
T 1nir_A 322 A--APFLHDGGWDSSHRYFMTAANNSNKVAVIDS------KDRRLSALVDVGK--------------------TPHPGRG 373 (543)
T ss_dssp C--CSSCCCEEECTTSCEEEEEEGGGTEEEEEET------TTTEEEEEEECSS--------------------SBCCTTC
T ss_pred c--CcCccCceECCCCCEEEEEecCCCeEEEEEC------CCCeEEEeeccCC--------------------CCCCCCC
Confidence 1 2468999999944468999988899999996 4565433221111 0111 23
Q ss_pred EE-EeCC-CcEEEEEC-C-C-EEEEcCC--------Cc-EEEEEcCCCCCCCCCcCCCCc-eEEecc
Q psy8782 343 VA-VSAD-NILYFADG-T-N-IRMVDRD--------GI-VTTVIGNHMHKSHWKPIPCEG-TLNIEE 394 (482)
Q Consensus 343 ia-vd~~-G~lyvaD~-~-n-Ir~i~~~--------G~-i~ti~G~~~~~~~~~~~~~dg-~l~v~~ 394 (482)
+. ++++ |.+|++.. + + |++++.+ ++ +.++-+.+. .+.+..+.+|| .||++.
T Consensus 374 ~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~-~~~~v~~~pdg~~l~v~~ 439 (543)
T 1nir_A 374 ANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGG-GSLFIKTHPKSSHLYVDT 439 (543)
T ss_dssp EEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS-CCCCEECCTTCCEEEECC
T ss_pred cccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCC-CceEEEcCCCCCcEEEec
Confidence 33 3566 78999874 2 3 8888753 34 566655432 23356667887 677654
No 96
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=98.69 E-value=8.2e-06 Score=78.98 Aligned_cols=198 Identities=15% Similarity=0.090 Sum_probs=119.5
Q ss_pred CceEEEEcCCCc-EEEEeC--CcEEEEcC-CCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEc---
Q psy8782 121 APVALATAPDGS-LFVGDF--NLIRRIMT-DGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKN--- 193 (482)
Q Consensus 121 ~P~glavd~~G~-lyvaD~--~~Irki~~-~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d--- 193 (482)
.|.+++++++|. ||+++. +.|++++. ++++...+..+..+ .....|.++.++++++.+|+++
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~s~dg~~l~~~~~~~ 103 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE-----------ERVKSLFGAALSPDGKTLAIYESPV 103 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT-----------EEEECTTCEEECTTSSEEEEEEEEE
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcc-----------cccccccceEECCCCCEEEEEeccc
Confidence 488999999995 888887 78999986 46655433321100 0012478888999998899885
Q ss_pred ---------CCCeEEEEcC-CCccccCCCcCCCCCCCceeecCCccEEEEcCCCC-EEEEECCcEEEEcC-CCeEEEEEe
Q psy8782 194 ---------KPRIIKTTLG-DGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGS-LFVGDFNLIRRIMT-DGTVRTVVR 261 (482)
Q Consensus 194 ---------~~~~i~~~~g-~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~-lyv~D~~~I~~i~~-~G~v~~~~g 261 (482)
.++.+..+.. +++... ....-..|.+++++|+|. ||++ .+.|+.++. ++++...+.
T Consensus 104 ~~~~~~~~~~~~~i~v~d~~~~~~~~-----------~~~~~~~~~~~~~s~dg~~l~~~-~~~i~~~d~~~~~~~~~~~ 171 (337)
T 1pby_B 104 RLELTHFEVQPTRVALYDAETLSRRK-----------AFEAPRQITMLAWARDGSKLYGL-GRDLHVMDPEAGTLVEDKP 171 (337)
T ss_dssp EECSSCEEECCCEEEEEETTTTEEEE-----------EEECCSSCCCEEECTTSSCEEEE-SSSEEEEETTTTEEEEEEC
T ss_pred ccccccccccCceEEEEECCCCcEEE-----------EEeCCCCcceeEECCCCCEEEEe-CCeEEEEECCCCcEeeeee
Confidence 3455555543 232211 001113578899999886 7777 467777774 344443332
Q ss_pred ecc---------------------------------------------------------------CCCCceeeEEEeCC
Q psy8782 262 LNV---------------------------------------------------------------TRVAYRYHIAYSPL 278 (482)
Q Consensus 262 ~~~---------------------------------------------------------------~~~~~p~giavd~~ 278 (482)
... .....|.+++++|+
T Consensus 172 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~d 251 (337)
T 1pby_B 172 IQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPA 251 (337)
T ss_dssp STTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTT
T ss_pred ccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCC
Confidence 110 00124566888884
Q ss_pred CCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCc-EEEEECC
Q psy8782 279 DGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNI-LYFADGT 357 (482)
Q Consensus 279 ~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~-lyvaD~~ 357 (482)
+..||++ +++|+.++. .++........ -..|.+++++++|. ||++...
T Consensus 252 g~~l~~~---~~~v~~~d~------~~~~~~~~~~~----------------------~~~~~~~~~s~dg~~l~~~~~~ 300 (337)
T 1pby_B 252 KTRAFGA---YNVLESFDL------EKNASIKRVPL----------------------PHSYYSVNVSTDGSTVWLGGAL 300 (337)
T ss_dssp SSEEEEE---ESEEEEEET------TTTEEEEEEEC----------------------SSCCCEEEECTTSCEEEEESBS
T ss_pred CCEEEEe---CCeEEEEEC------CCCcCcceecC----------------------CCceeeEEECCCCCEEEEEcCC
Confidence 4577777 478888874 23433222110 13588999999986 7777544
Q ss_pred C-EEEEcC-CCcEEEEE
Q psy8782 358 N-IRMVDR-DGIVTTVI 372 (482)
Q Consensus 358 n-Ir~i~~-~G~i~ti~ 372 (482)
+ |++++. ++++...+
T Consensus 301 ~~i~v~d~~~~~~~~~~ 317 (337)
T 1pby_B 301 GDLAAYDAETLEKKGQV 317 (337)
T ss_dssp SEEEEEETTTCCEEEEE
T ss_pred CcEEEEECcCCcEEEEE
Confidence 4 888885 56544333
No 97
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=98.68 E-value=8.1e-06 Score=86.58 Aligned_cols=191 Identities=9% Similarity=0.045 Sum_probs=131.8
Q ss_pred EEcCCCcEEEEeC--CcEEEEcCC-CeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCCCeEEEEc
Q psy8782 126 ATAPDGSLFVGDF--NLIRRIMTD-GTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKPRIIKTTL 202 (482)
Q Consensus 126 avd~~G~lyvaD~--~~Irki~~~-G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~~~i~~~~ 202 (482)
+++++|.+||+.. +.|+.++.+ |++...+..+ ..|.++++++++..+|+++..+.+..+.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g-----------------~~~~~v~~spdg~~l~v~~~d~~V~v~D 206 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTG-----------------YAVHISRMSASGRYLLVIGRDARIDMID 206 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECS-----------------TTEEEEEECTTSCEEEEEETTSEEEEEE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecC-----------------cccceEEECCCCCEEEEECCCCeEEEEE
Confidence 3678899999987 889999864 6665444322 1267889999999999998878888775
Q ss_pred C---CCccccCCCcCCCCCCCceeecCCccEEEEcC----CC-CEEEEEC--CcEEEEc-CCCeEEEEEeeccC------
Q psy8782 203 G---DGHQRPLDCKDCNGEAGPKQRLLAPVALATAP----DG-SLFVGDF--NLIRRIM-TDGTVRTVVRLNVT------ 265 (482)
Q Consensus 203 g---~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~----~G-~lyv~D~--~~I~~i~-~~G~v~~~~g~~~~------ 265 (482)
- +++... ....-..|.+++++| +| .||++.. +.|..++ .++++...+.....
T Consensus 207 ~~~~t~~~~~-----------~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~ 275 (543)
T 1nir_A 207 LWAKEPTKVA-----------EIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQT 275 (543)
T ss_dssp TTSSSCEEEE-----------EEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCC
T ss_pred CcCCCCcEEE-----------EEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccc
Confidence 4 333211 011123599999999 88 5888885 8899998 45666655533110
Q ss_pred --CCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCc-EE--EEecCCcccCCCCCCccCCCccccccccCCc
Q psy8782 266 --RVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYN-VE--PAVGSGERCLPGDEAHCGDGAPARDAKLAYP 340 (482)
Q Consensus 266 --~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~-~~--~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P 340 (482)
.-..+..|++++.++.+|++....++|+.++.. ++. +. .+. .-..|
T Consensus 276 ~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~------~~~~l~~~~i~-----------------------~~~~~ 326 (543)
T 1nir_A 276 YHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYK------DIDNLTVTSIG-----------------------AAPFL 326 (543)
T ss_dssp EESCCCEEEEEECSSSSEEEEEETTTTEEEEEECT------TSSSCEEEEEE-----------------------CCSSC
T ss_pred cccCCceEEEEECCCCCEEEEEECCCCeEEEEEec------CCCcceeEEec-----------------------cCcCc
Confidence 112577899999677999999999999999952 211 11 111 01358
Q ss_pred ceEEEeCCCc-EEEEECC-C-EEEEcC-CCcEEEEEc
Q psy8782 341 KGVAVSADNI-LYFADGT-N-IRMVDR-DGIVTTVIG 373 (482)
Q Consensus 341 ~giavd~~G~-lyvaD~~-n-Ir~i~~-~G~i~ti~G 373 (482)
++++++++|. +|++... + |+++|. +|++...+-
T Consensus 327 ~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~ 363 (543)
T 1nir_A 327 HDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVD 363 (543)
T ss_dssp CCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred cCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeec
Confidence 8999999998 7777653 3 999996 677655443
No 98
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=98.67 E-value=1e-05 Score=80.68 Aligned_cols=161 Identities=15% Similarity=0.070 Sum_probs=98.4
Q ss_pred CCceEEEecCCCeEEEEcCCCeEEEEc-C-CCccccCCCcCCCCCCCceeecCCccEEEEcCCCC---EEEEE-------
Q psy8782 176 SPSGILQKGDGSNIYLKNKPRIIKTTL-G-DGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGS---LFVGD------- 243 (482)
Q Consensus 176 ~P~gi~~~~~g~~lyi~d~~~~i~~~~-g-~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~---lyv~D------- 243 (482)
.|..+++++++..||+++.. .+..+. . +|+..... ....-..|..++++|+|. ||+++
T Consensus 41 ~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~---------~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~ 110 (365)
T 1jof_A 41 PISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEA---------SHPIGGHPRANDADTNTRAIFLLAAKQPPYAVY 110 (365)
T ss_dssp CCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEE---------EEECCSSGGGGCTTSCCEEEEEEECSSTTCCEE
T ss_pred CCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEee---------EeecCCCCccEEECCCCCEEEEEEecCCcceec
Confidence 58899999999889988766 555443 1 44432100 000012478899999997 34453
Q ss_pred ------C-CcEEE--EcCCCeEEEEEeec-cCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEec
Q psy8782 244 ------F-NLIRR--IMTDGTVRTVVRLN-VTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVG 313 (482)
Q Consensus 244 ------~-~~I~~--i~~~G~v~~~~g~~-~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG 313 (482)
. +.++. ++.+|++...+... ......|.+++++|+...||+++.+.++|+.++.. ++|....+.-
T Consensus 111 ~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~-----~~g~~~~~~~ 185 (365)
T 1jof_A 111 ANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKL-----ASGEVELVGS 185 (365)
T ss_dssp EEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC-----TTSCEEEEEE
T ss_pred cceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEEC-----CCCCEEEeee
Confidence 3 44444 45578765433221 12345799999999444799999988999999852 1455543321
Q ss_pred CCcccCCCCCCccCCCccccccccCCcceEEEeCCC-cEEEEECC-C-EEEE--cC-CCcE
Q psy8782 314 SGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADN-ILYFADGT-N-IRMV--DR-DGIV 368 (482)
Q Consensus 314 ~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G-~lyvaD~~-n-Ir~i--~~-~G~i 368 (482)
. ... ..-..|.+++++++| .||+++.. + |+++ ++ +|.+
T Consensus 186 ~-----------~~~------~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~ 229 (365)
T 1jof_A 186 V-----------DAP------DPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMP 229 (365)
T ss_dssp E-----------ECS------STTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred E-----------ecC------CCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcE
Confidence 0 000 002359999999999 58898763 3 6665 43 5764
No 99
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.66 E-value=1.2e-05 Score=75.93 Aligned_cols=188 Identities=14% Similarity=0.128 Sum_probs=119.3
Q ss_pred CceEEEEcCCCcEEEEeC----CcEEEEcC-CCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcC-
Q psy8782 121 APVALATAPDGSLFVGDF----NLIRRIMT-DGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNK- 194 (482)
Q Consensus 121 ~P~glavd~~G~lyvaD~----~~Irki~~-~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~- 194 (482)
+-.||++++ +.||++.. ..|+++++ +|++..-....... ...|++. .++.||+.+-
T Consensus 22 ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~---------------fgeGi~~--~~~~ly~ltw~ 83 (243)
T 3mbr_X 22 FTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPY---------------FGAGIVA--WRDRLIQLTWR 83 (243)
T ss_dssp CEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTC---------------CEEEEEE--ETTEEEEEESS
T ss_pred ccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCc---------------ceeEEEE--eCCEEEEEEee
Confidence 457999986 89999977 48999997 58877655432211 1234444 4578888763
Q ss_pred CCeEEEEc-CCCccccCCCcCCCCCCCceeec---CCccEEEEcCCCCEEEEEC-CcEEEEcCC-CeEEEEEeec--cCC
Q psy8782 195 PRIIKTTL-GDGHQRPLDCKDCNGEAGPKQRL---LAPVALATAPDGSLFVGDF-NLIRRIMTD-GTVRTVVRLN--VTR 266 (482)
Q Consensus 195 ~~~i~~~~-g~G~~~~~~~~~~~g~~~~~~~l---~~P~giavd~~G~lyv~D~-~~I~~i~~~-G~v~~~~g~~--~~~ 266 (482)
++.+..+. .+.+.. +++ ..++|++.|. +.||++|. ++|+.+||. .++...+... ...
T Consensus 84 ~~~v~v~D~~tl~~~--------------~ti~~~~~Gwglt~dg-~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~ 148 (243)
T 3mbr_X 84 NHEGFVYDLATLTPR--------------ARFRYPGEGWALTSDD-SHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRP 148 (243)
T ss_dssp SSEEEEEETTTTEEE--------------EEEECSSCCCEEEECS-SCEEEECSSSEEEEECTTTCCEEEEEECEETTEE
T ss_pred CCEEEEEECCcCcEE--------------EEEeCCCCceEEeeCC-CEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcc
Confidence 34444433 333321 111 2467887663 68999999 899999975 4555544332 223
Q ss_pred CCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEe
Q psy8782 267 VAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVS 346 (482)
Q Consensus 267 ~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd 346 (482)
+..++.|... +|.||+.....+.|.+||+ .+|.+.-..-.+. +.+.. .. .......-|+|||.|
T Consensus 149 ~~~lNeLe~~--~G~lyanvw~s~~I~vIDp------~tG~V~~~idl~~-l~~~~----~~---~~~~~~~vlNGIA~d 212 (243)
T 3mbr_X 149 LDNLNELEWV--NGELLANVWLTSRIARIDP------ASGKVVAWIDLQA-LVPDA----DA---LTDSTNDVLNGIAFD 212 (243)
T ss_dssp CCCEEEEEEE--TTEEEEEETTTTEEEEECT------TTCBEEEEEECGG-GSTTT----TS---CCCTTSSCEEEEEEE
T ss_pred cccceeeEEe--CCEEEEEECCCCeEEEEEC------CCCCEEEEEECCc-Ccccc----cc---ccCCcCCceEEEEEc
Confidence 4556777765 7899999999999999996 5787665543221 11100 00 001234679999999
Q ss_pred CC-CcEEEEECC
Q psy8782 347 AD-NILYFADGT 357 (482)
Q Consensus 347 ~~-G~lyvaD~~ 357 (482)
++ +.|||+.-.
T Consensus 213 ~~~~~lfVTGK~ 224 (243)
T 3mbr_X 213 AEHDRLFVTGKR 224 (243)
T ss_dssp TTTTEEEEEETT
T ss_pred CCCCEEEEECCC
Confidence 86 568888753
No 100
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=98.63 E-value=1.8e-05 Score=79.97 Aligned_cols=194 Identities=15% Similarity=0.181 Sum_probs=129.2
Q ss_pred CCceEEEEcCCCcEEEEeC--CcEEEEcCC-CeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEc-CC
Q psy8782 120 LAPVALATAPDGSLFVGDF--NLIRRIMTD-GTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKN-KP 195 (482)
Q Consensus 120 ~~P~glavd~~G~lyvaD~--~~Irki~~~-G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d-~~ 195 (482)
....++++.++|.+|++.. +.|+.++.+ ++........ ...|..+.+++++..+|++. .+
T Consensus 170 ~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~l~~~~~~~ 233 (433)
T 3bws_A 170 GFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLT----------------GKWSKILLYDPIRDLVYCSNWIS 233 (433)
T ss_dssp CEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECS----------------SSSEEEEEEETTTTEEEEEETTT
T ss_pred CceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCC----------------CCCeeEEEEcCCCCEEEEEecCC
Confidence 3567789999999999987 789998864 4444332211 12467888999998898887 46
Q ss_pred CeEEEEc-CCCccccCCCcCCCCCCCceeecCCccEEEEcCCC-CEEEEEC---------CcEEEEcC-CCeEEEEEeec
Q psy8782 196 RIIKTTL-GDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDG-SLFVGDF---------NLIRRIMT-DGTVRTVVRLN 263 (482)
Q Consensus 196 ~~i~~~~-g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G-~lyv~D~---------~~I~~i~~-~G~v~~~~g~~ 263 (482)
+.+..+. .+++.... ...-..|.+++++|+| .||++.. +.|+.++. ++++......
T Consensus 234 ~~i~~~d~~~~~~~~~-----------~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~- 301 (433)
T 3bws_A 234 EDISVIDRKTKLEIRK-----------TDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGP- 301 (433)
T ss_dssp TEEEEEETTTTEEEEE-----------CCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEE-
T ss_pred CcEEEEECCCCcEEEE-----------ecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccC-
Confidence 6666664 33432110 0011248899999998 5677763 37888885 5666555432
Q ss_pred cCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceE
Q psy8782 264 VTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGV 343 (482)
Q Consensus 264 ~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~gi 343 (482)
...|.+++++|++..||++....++|+.++. .++....... ....|.++
T Consensus 302 ---~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~------~~~~~~~~~~----------------------~~~~~~~~ 350 (433)
T 3bws_A 302 ---PGNKRHIVSGNTENKIYVSDMCCSKIEVYDL------KEKKVQKSIP----------------------VFDKPNTI 350 (433)
T ss_dssp ---EECEEEEEECSSTTEEEEEETTTTEEEEEET------TTTEEEEEEE----------------------CSSSEEEE
T ss_pred ---CCCcceEEECCCCCEEEEEecCCCEEEEEEC------CCCcEEEEec----------------------CCCCCCeE
Confidence 1268899999944489999999999999995 2344332221 02347899
Q ss_pred EEeCCCc-EEEEECC----------------CEEEEcC-CCcEEEEE
Q psy8782 344 AVSADNI-LYFADGT----------------NIRMVDR-DGIVTTVI 372 (482)
Q Consensus 344 avd~~G~-lyvaD~~----------------nIr~i~~-~G~i~ti~ 372 (482)
+++++|. ||++... .|++++. ++++...+
T Consensus 351 ~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~ 397 (433)
T 3bws_A 351 ALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFW 397 (433)
T ss_dssp EECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEE
T ss_pred EEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEe
Confidence 9999986 8888764 4788875 56554443
No 101
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=98.61 E-value=2.5e-05 Score=75.99 Aligned_cols=121 Identities=20% Similarity=0.163 Sum_probs=75.1
Q ss_pred CceEEEEcCCCc-EEEEeC--CcEEEEcCC-CeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCC-
Q psy8782 121 APVALATAPDGS-LFVGDF--NLIRRIMTD-GTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKP- 195 (482)
Q Consensus 121 ~P~glavd~~G~-lyvaD~--~~Irki~~~-G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~- 195 (482)
.|.+++++++|. +|++.. +.|++++.+ +++...+...... ......|.++.+++++..+|++...
T Consensus 44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~----------~~~~~~~~~~~~spdg~~l~~~~~~~ 113 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVP----------GEVGRSMYSFAISPDGKEVYATVNPT 113 (349)
T ss_dssp SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCST----------TEEEECSSCEEECTTSSEEEEEEEEE
T ss_pred CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccc----------ccccccccceEECCCCCEEEEEcccc
Confidence 488999999997 888876 789999874 6665443321100 0001347889999999899988632
Q ss_pred -----------CeEEEEc-CCCccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEECCcEEEEcC-CCeEEEEE
Q psy8782 196 -----------RIIKTTL-GDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDFNLIRRIMT-DGTVRTVV 260 (482)
Q Consensus 196 -----------~~i~~~~-g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~~~I~~i~~-~G~v~~~~ 260 (482)
+.+..+. .+++..... .....-..+.+++++++|.||+++ +.|++++. +|++...+
T Consensus 114 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~--------~~~~~~~~~~~~~~s~dg~l~~~~-~~i~~~d~~~~~~~~~~ 182 (349)
T 1jmx_B 114 QRLNDHYVVKPPRLEVFSTADGLEAKPV--------RTFPMPRQVYLMRAADDGSLYVAG-PDIYKMDVKTGKYTVAL 182 (349)
T ss_dssp EECSSCEEECCCEEEEEEGGGGGGBCCS--------EEEECCSSCCCEEECTTSCEEEES-SSEEEECTTTCCEEEEE
T ss_pred cccccccccCCCeEEEEECCCcccccee--------eeccCCCcccceeECCCCcEEEcc-CcEEEEeCCCCceeccc
Confidence 4555543 333221100 000111247788899999988864 45888885 56665544
No 102
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.58 E-value=8.3e-06 Score=77.72 Aligned_cols=185 Identities=14% Similarity=0.131 Sum_probs=116.6
Q ss_pred ceEEEEcCCCcEEEEeC--CcEEEEcC-CCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcC-CCe
Q psy8782 122 PVALATAPDGSLFVGDF--NLIRRIMT-DGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNK-PRI 197 (482)
Q Consensus 122 P~glavd~~G~lyvaD~--~~Irki~~-~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~-~~~ 197 (482)
-.||.++ ++.||++.. ++|+++++ +|++..-. .....| ..|+++ +++.||+.+- ++.
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~F---------------geGit~--~g~~Ly~ltw~~~~ 117 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIF---------------AEGLAS--DGERLYQLTWTEGL 117 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCC---------------EEEEEE--CSSCEEEEESSSCE
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcc---------------eeEEEE--eCCEEEEEEccCCE
Confidence 3789988 589999998 68999987 47655433 322111 234444 4568888763 344
Q ss_pred EEEE-cCCCccccCCCcCCCCCCCceeec---CCccEEEEcCCCCEEEEEC-CcEEEEcCC-CeEEEEEee--ccCCCCc
Q psy8782 198 IKTT-LGDGHQRPLDCKDCNGEAGPKQRL---LAPVALATAPDGSLFVGDF-NLIRRIMTD-GTVRTVVRL--NVTRVAY 269 (482)
Q Consensus 198 i~~~-~g~G~~~~~~~~~~~g~~~~~~~l---~~P~giavd~~G~lyv~D~-~~I~~i~~~-G~v~~~~g~--~~~~~~~ 269 (482)
+..+ ..+.+.. +++ ..++|++.|. +.||++|. ++|+.+||. .++...+.. ....+..
T Consensus 118 v~V~D~~Tl~~~--------------~ti~~~~eGwGLt~Dg-~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~ 182 (268)
T 3nok_A 118 LFTWSGMPPQRE--------------RTTRYSGEGWGLCYWN-GKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVEL 182 (268)
T ss_dssp EEEEETTTTEEE--------------EEEECSSCCCCEEEET-TEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCC
T ss_pred EEEEECCcCcEE--------------EEEeCCCceeEEecCC-CEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCccccc
Confidence 4433 3344431 111 2356777664 58999997 899999975 466554433 2334556
Q ss_pred eeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCC-
Q psy8782 270 RYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSAD- 348 (482)
Q Consensus 270 p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~- 348 (482)
++.|... +|.||++....+.|.+||. .+|.+.-..-... +.+ .... .......-|+|||.|++
T Consensus 183 lNeLe~~--dG~lyanvw~s~~I~vIDp------~TG~V~~~Idl~~-L~~----~~~~---~~~~~~~vlNGIA~dp~~ 246 (268)
T 3nok_A 183 INELECA--NGVIYANIWHSSDVLEIDP------ATGTVVGVIDASA-LTR----AVAG---QVTNPEAVLNGIAVEPGS 246 (268)
T ss_dssp EEEEEEE--TTEEEEEETTCSEEEEECT------TTCBEEEEEECHH-HHH----HHTT---TCCCTTCCEEEEEECTTT
T ss_pred ccccEEe--CCEEEEEECCCCeEEEEeC------CCCcEEEEEECCC-Ccc----cccc---cccCcCCceEEEEEcCCC
Confidence 7788876 7899999999999999996 5777655543211 000 0000 01122457999999986
Q ss_pred CcEEEEEC
Q psy8782 349 NILYFADG 356 (482)
Q Consensus 349 G~lyvaD~ 356 (482)
+.|||+.-
T Consensus 247 ~rlfVTGK 254 (268)
T 3nok_A 247 GRIFMTGK 254 (268)
T ss_dssp CCEEEEET
T ss_pred CEEEEeCC
Confidence 56999875
No 103
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=98.57 E-value=3.6e-05 Score=77.74 Aligned_cols=282 Identities=10% Similarity=0.001 Sum_probs=153.2
Q ss_pred CceEEEEcCCCcEEEEeC--CcEEEEcCC-CeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEc-CCC
Q psy8782 121 APVALATAPDGSLFVGDF--NLIRRIMTD-GTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKN-KPR 196 (482)
Q Consensus 121 ~P~glavd~~G~lyvaD~--~~Irki~~~-G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d-~~~ 196 (482)
.|.++++++++.+|++.. +.|+.++.+ |+......... +.+. ......+.+.+++ .++++. .++
T Consensus 124 ~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~--~~~~---------~~~v~~~~~~~~~-~~~~s~~~d~ 191 (433)
T 3bws_A 124 QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEK--YKKK---------LGFVETISIPEHN-ELWVSQMQAN 191 (433)
T ss_dssp CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHH--HHTT---------CCEEEEEEEGGGT-EEEEEEGGGT
T ss_pred CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCccc--cccc---------CCceeEEEEcCCC-EEEEEECCCC
Confidence 477899999888999886 679999875 66554332110 0000 0012345554444 445443 345
Q ss_pred eEEEEcC-CCccccCCCcCCCCCCCceeecCCccEEEEcCCCC-EEEEEC--CcEEEEcC-CCeEEEEEeeccCCCCcee
Q psy8782 197 IIKTTLG-DGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGS-LFVGDF--NLIRRIMT-DGTVRTVVRLNVTRVAYRY 271 (482)
Q Consensus 197 ~i~~~~g-~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~-lyv~D~--~~I~~i~~-~G~v~~~~g~~~~~~~~p~ 271 (482)
.+..+.- +++.... ....-..|..++++++|. ||++.. +.|+.++. +++....+.. ...|.
T Consensus 192 ~v~~~d~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~----~~~~~ 257 (433)
T 3bws_A 192 AVHVFDLKTLAYKAT----------VDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK----IGLPR 257 (433)
T ss_dssp EEEEEETTTCCEEEE----------EECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC----CSEEE
T ss_pred EEEEEECCCceEEEE----------EcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC----CCCce
Confidence 5555432 2221100 111224688999999885 668885 78999995 5665544322 23589
Q ss_pred eEEEeCCCCeEEEEeC-------CCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEE
Q psy8782 272 HIAYSPLDGTLYISDP-------ESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVA 344 (482)
Q Consensus 272 giavd~~~g~lyVaD~-------~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~gia 344 (482)
+++++|++..|+++.. .++.|+.++. .++........ -..|.+++
T Consensus 258 ~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~------~~~~~~~~~~~----------------------~~~~~~~~ 309 (433)
T 3bws_A 258 GLLLSKDGKELYIAQFSASNQESGGGRLGIYSM------DKEKLIDTIGP----------------------PGNKRHIV 309 (433)
T ss_dssp EEEECTTSSEEEEEEEESCTTCSCCEEEEEEET------TTTEEEEEEEE----------------------EECEEEEE
T ss_pred EEEEcCCCCEEEEEECCCCccccCCCeEEEEEC------CCCcEEeeccC----------------------CCCcceEE
Confidence 9999995558888875 4568888985 23443322210 12578899
Q ss_pred EeCCC-cEEEEECCC--EEEEcCC-CcEEEEEcCCCCCCCCCcCCCCce-EEeccccc-eeEEeecCcceEEecccCCCc
Q psy8782 345 VSADN-ILYFADGTN--IRMVDRD-GIVTTVIGNHMHKSHWKPIPCEGT-LNIEEVSE-TMRDIRHTTGWACYGTGDNDH 418 (482)
Q Consensus 345 vd~~G-~lyvaD~~n--Ir~i~~~-G~i~ti~G~~~~~~~~~~~~~dg~-l~v~~~~~-~~~~l~~p~giav~~~g~n~~ 418 (482)
++++| .||++.... |++++.+ +++...+... .......++++|. |++..... .+ ..-.+...+.++.
T Consensus 310 ~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~~------~~~~~~~g~~dg~ 382 (433)
T 3bws_A 310 SGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVF-DKPNTIALSPDGKYLYVSCRGPNHP------TEGYLKKGLVLGK 382 (433)
T ss_dssp ECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEECCCCCT------TTCTTSCCSSCCE
T ss_pred ECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCC-CCCCeEEEcCCCCEEEEEecCCCcc------ccccccccccceE
Confidence 99998 488886654 8888864 6555444322 1122344556663 44433211 00 0000000012334
Q ss_pred eEEEeeceeeeeeeeeeecccceeeeeeEEcCCCc-EEEEeCCCCeeEEe
Q psy8782 419 MTLIHCYGVMQDVVTSVFNNSHFLDVHFSHQDQDL-FYFVKELPQKIRDD 467 (482)
Q Consensus 419 ~~~~~~~g~~~~~~~~~~n~~~~~~~~i~~~~~g~-~yi~d~~n~rIrk~ 467 (482)
+.+++........... . ...+..++++++|. +|++....+.|+..
T Consensus 383 v~~~d~~~~~~~~~~~---~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~ 428 (433)
T 3bws_A 383 VYVIDTTTDTVKEFWE---A-GNQPTGLDVSPDNRYLVISDFLDHQIRVY 428 (433)
T ss_dssp EEEEETTTTEEEEEEE---C-SSSEEEEEECTTSCEEEEEETTTTEEEEE
T ss_pred EEEEECCCCcEEEEec---C-CCCCceEEEcCCCCEEEEEECCCCeEEEE
Confidence 5544432111000011 0 11245678888875 55677777888754
No 104
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.56 E-value=2.1e-05 Score=75.41 Aligned_cols=152 Identities=14% Similarity=0.113 Sum_probs=106.6
Q ss_pred CCceEEEEcCCCcEEEEeC--CcEEEEcCC-CeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCCC
Q psy8782 120 LAPVALATAPDGSLFVGDF--NLIRRIMTD-GTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKPR 196 (482)
Q Consensus 120 ~~P~glavd~~G~lyvaD~--~~Irki~~~-G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~~ 196 (482)
..+.|++++ .+.||++.. +++.++|++ +++..-+..+ .|.|..+..+++.+|+++..+
T Consensus 66 ~fgeGi~~~-g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g------------------~~~g~glt~Dg~~l~vs~gs~ 126 (266)
T 2iwa_A 66 YFGEGLTLL-NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ------------------MKDGWGLATDGKILYGSDGTS 126 (266)
T ss_dssp CCEEEEEEE-TTEEEEEETTCSEEEEEETTTTEEEEEEECC------------------SSSCCEEEECSSSEEEECSSS
T ss_pred cceEEEEEe-CCEEEEEEecCCEEEEEECCCCcEEEEEECC------------------CCCeEEEEECCCEEEEECCCC
Confidence 356788888 458999997 899999974 6655433221 145555666788899998777
Q ss_pred eEEEEcCCC-ccc-cCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC--CcEEEEcC-CCeEEEEEeecc-------
Q psy8782 197 IIKTTLGDG-HQR-PLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF--NLIRRIMT-DGTVRTVVRLNV------- 264 (482)
Q Consensus 197 ~i~~~~g~G-~~~-~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~--~~I~~i~~-~G~v~~~~g~~~------- 264 (482)
.+..+.... +.. .... . .....+..|+.|.+. +|.||++.+ +.|.+||+ +|++...+..+.
T Consensus 127 ~l~viD~~t~~v~~~I~V-g-----~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~ 199 (266)
T 2iwa_A 127 ILYEIDPHTFKLIKKHNV-K-----YNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLID 199 (266)
T ss_dssp EEEEECTTTCCEEEEEEC-E-----ETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHH
T ss_pred eEEEEECCCCcEEEEEEE-C-----CCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCccccccc
Confidence 777765432 211 0000 0 011344568898887 799999997 89999996 788877775421
Q ss_pred ---CCCCceeeEEEeCCCCeEEEEeCCCCEEEEEec
Q psy8782 265 ---TRVAYRYHIAYSPLDGTLYISDPESHQILRVKN 297 (482)
Q Consensus 265 ---~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~ 297 (482)
.....|+|||++|..+.|||+.....+++.++.
T Consensus 200 ~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l 235 (266)
T 2iwa_A 200 EGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKL 235 (266)
T ss_dssp TTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred ccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEE
Confidence 123578999999966799999999999999985
No 105
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.55 E-value=6.9e-05 Score=79.82 Aligned_cols=214 Identities=8% Similarity=0.039 Sum_probs=128.7
Q ss_pred EcCCCcEEEEeC--CcEEEEcCC-CeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCCCeEEEEcC
Q psy8782 127 TAPDGSLFVGDF--NLIRRIMTD-GTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKPRIIKTTLG 203 (482)
Q Consensus 127 vd~~G~lyvaD~--~~Irki~~~-G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~~~i~~~~g 203 (482)
.|+.+.+||+.. +.|..||.+ +++...+..+ ..|.++++++++..+|+++..+.+..+.-
T Consensus 163 ~d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-----------------~~p~~v~~SpDGr~lyv~~~dg~V~viD~ 225 (567)
T 1qks_A 163 WDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-----------------YAVHISRLSASGRYLFVIGRDGKVNMIDL 225 (567)
T ss_dssp CCGGGEEEEEETTTTEEEEEETTTCCEEEEEECS-----------------SCEEEEEECTTSCEEEEEETTSEEEEEET
T ss_pred cCCCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-----------------CCccceEECCCCCEEEEEcCCCeEEEEEC
Confidence 455667899987 899999875 6666444332 24789999999999999987777777754
Q ss_pred ---CCccccCCCcCCCCCCCceeecCCccEEEEc----CCC-CEEEEEC--CcEEEEcC-CCeEEEEEeecc--------
Q psy8782 204 ---DGHQRPLDCKDCNGEAGPKQRLLAPVALATA----PDG-SLFVGDF--NLIRRIMT-DGTVRTVVRLNV-------- 264 (482)
Q Consensus 204 ---~G~~~~~~~~~~~g~~~~~~~l~~P~giavd----~~G-~lyv~D~--~~I~~i~~-~G~v~~~~g~~~-------- 264 (482)
+++... ....-..|.+|+++ ||| .+||++. +.|..+|. +.++...+....
T Consensus 226 ~~~t~~~v~-----------~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~ 294 (567)
T 1qks_A 226 WMKEPTTVA-----------EIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEY 294 (567)
T ss_dssp TSSSCCEEE-----------EEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCE
T ss_pred CCCCCcEeE-----------EEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccc
Confidence 333210 00111359999999 688 6899887 77777773 334333322110
Q ss_pred --------------------------------------------CCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCc
Q psy8782 265 --------------------------------------------TRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMD 300 (482)
Q Consensus 265 --------------------------------------------~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~ 300 (482)
..-.+|.++.++|+...+|+++...++|..++.
T Consensus 295 ~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~--- 371 (567)
T 1qks_A 295 HPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDT--- 371 (567)
T ss_dssp ESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEET---
T ss_pred cCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEEC---
Confidence 001245667777744467777777788888875
Q ss_pred cCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCc-ceEE-EeCC-CcEEEEEC-C--CEEEEcCCC--------
Q psy8782 301 FSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYP-KGVA-VSAD-NILYFADG-T--NIRMVDRDG-------- 366 (482)
Q Consensus 301 ~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P-~gia-vd~~-G~lyvaD~-~--nIr~i~~~G-------- 366 (482)
.++++....-.+ + +.-+| .|+. ++++ |.+|++.. + .|.+|+.+-
T Consensus 372 ---~t~kl~~~i~vg-----------g--------~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~ 429 (567)
T 1qks_A 372 ---KEGKLVAIEDTG-----------G--------QTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAW 429 (567)
T ss_dssp ---TTTEEEEEEECS-----------S--------SSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBT
T ss_pred ---CCCcEEEEEecc-----------C--------cCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccC
Confidence 344432222110 0 11223 3554 4676 67887652 3 388997642
Q ss_pred -cEEEEEcCCCCCCCCCcCCCCc-eEEecc
Q psy8782 367 -IVTTVIGNHMHKSHWKPIPCEG-TLNIEE 394 (482)
Q Consensus 367 -~i~ti~G~~~~~~~~~~~~~dg-~l~v~~ 394 (482)
.+.++-+.+ ..+.+....+++ .||++.
T Consensus 430 kvv~~i~~~g-~g~~~i~~~p~~~~l~v~~ 458 (567)
T 1qks_A 430 KILDSFPALG-GGSLFIKTHPNSQYLYVDA 458 (567)
T ss_dssp SEEEEEECSC-SCCCCEECCTTCSEEEEEC
T ss_pred EEEEEEecCC-CCCEEEEeCCCCCeEEEec
Confidence 356665443 223344556777 688755
No 106
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=98.55 E-value=1e-05 Score=78.76 Aligned_cols=151 Identities=16% Similarity=0.166 Sum_probs=90.3
Q ss_pred ceEEEEcCCCcEEEEeC--CcEEEEcCC-CeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcC-CCe
Q psy8782 122 PVALATAPDGSLFVGDF--NLIRRIMTD-GTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNK-PRI 197 (482)
Q Consensus 122 P~glavd~~G~lyvaD~--~~Irki~~~-G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~-~~~ 197 (482)
+.|+++.+++.+|++.. +.|+.++.+ +++...+..+. ...|.++++++++..+|++.. .+.
T Consensus 2 ~~g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~---------------~~~~~~~~~s~dg~~~~v~~~~~~~ 66 (349)
T 1jmx_B 2 DTGPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPD---------------KFGPGTAMMAPDNRTAYVLNNHYGD 66 (349)
T ss_dssp --CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSS---------------CCSSCEEEECTTSSEEEEEETTTTE
T ss_pred CccccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCC---------------CCCCceeEECCCCCEEEEEeCCCCc
Confidence 45677788899999886 899999864 66654433221 114778888888888888764 455
Q ss_pred EEEEc-CCCcccc-CCCcCCCCCCCceeecCCccEEEEcCCC-CEEEEE-------------CCcEEEEcCC-CeEEEEE
Q psy8782 198 IKTTL-GDGHQRP-LDCKDCNGEAGPKQRLLAPVALATAPDG-SLFVGD-------------FNLIRRIMTD-GTVRTVV 260 (482)
Q Consensus 198 i~~~~-g~G~~~~-~~~~~~~g~~~~~~~l~~P~giavd~~G-~lyv~D-------------~~~I~~i~~~-G~v~~~~ 260 (482)
+..+. .+++... ... ... ....-..|.+++++|+| .||++. .+.|+.++.. +++....
T Consensus 67 i~~~d~~t~~~~~~~~~---~~~--~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 141 (349)
T 1jmx_B 67 IYGIDLDTCKNTFHANL---SSV--PGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV 141 (349)
T ss_dssp EEEEETTTTEEEEEEES---CCS--TTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS
T ss_pred EEEEeCCCCcEEEEEEc---ccc--cccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccccee
Confidence 55553 3343321 000 000 00012348999999999 577777 3678888754 2221111
Q ss_pred eeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEec
Q psy8782 261 RLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKN 297 (482)
Q Consensus 261 g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~ 297 (482)
.. ......+.+++++| +|.||+++ +.|+.++.
T Consensus 142 ~~-~~~~~~~~~~~~s~-dg~l~~~~---~~i~~~d~ 173 (349)
T 1jmx_B 142 RT-FPMPRQVYLMRAAD-DGSLYVAG---PDIYKMDV 173 (349)
T ss_dssp EE-EECCSSCCCEEECT-TSCEEEES---SSEEEECT
T ss_pred ee-ccCCCcccceeECC-CCcEEEcc---CcEEEEeC
Confidence 00 01122578899999 66799864 34888885
No 107
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=98.52 E-value=2.1e-05 Score=78.66 Aligned_cols=70 Identities=17% Similarity=0.154 Sum_probs=45.9
Q ss_pred CceEEEEcCCCc-EEEEeC-----------CcEEEEcCC-CeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCC
Q psy8782 121 APVALATAPDGS-LFVGDF-----------NLIRRIMTD-GTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGS 187 (482)
Q Consensus 121 ~P~glavd~~G~-lyvaD~-----------~~Irki~~~-G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~ 187 (482)
.| +++++|||. ||+++. +.|..++.. +++...+..+...+. ....|.++++++++.
T Consensus 52 ~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~----------~g~~p~~i~~spdg~ 120 (361)
T 2oiz_A 52 NG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQ----------GLNYDGLFRQTTDGK 120 (361)
T ss_dssp EE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCC----------BCCCGGGEEECTTSS
T ss_pred CC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccc----------cCCCcceEEECCCCC
Confidence 47 999999986 899872 458899864 454433322211110 013589999999999
Q ss_pred eEEEEcC--CCeEEEE
Q psy8782 188 NIYLKNK--PRIIKTT 201 (482)
Q Consensus 188 ~lyi~d~--~~~i~~~ 201 (482)
.||+++. .+.+..+
T Consensus 121 ~l~v~n~~~~~~v~v~ 136 (361)
T 2oiz_A 121 FIVLQNASPATSIGIV 136 (361)
T ss_dssp EEEEEEESSSEEEEEE
T ss_pred EEEEECCCCCCeEEEE
Confidence 9999874 3445544
No 108
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=98.42 E-value=0.00083 Score=70.36 Aligned_cols=189 Identities=17% Similarity=0.226 Sum_probs=117.7
Q ss_pred CceEEEEcCCCcEEEEeC--CcEEEEcCCCe-EEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCCCe
Q psy8782 121 APVALATAPDGSLFVGDF--NLIRRIMTDGT-VRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKPRI 197 (482)
Q Consensus 121 ~P~glavd~~G~lyvaD~--~~Irki~~~G~-v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~~~ 197 (482)
...++++.|+|..+++-. +.|+..+.++. +.++.+. ......+++.+++..+.....++.
T Consensus 305 ~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~-----------------~~~v~~~~~s~~g~~l~~~~~dg~ 367 (577)
T 2ymu_A 305 SVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGH-----------------SSSVWGVAFSPDGQTIASASDDKT 367 (577)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCC-----------------SSCEEEEEECTTSSEEEEEETTSE
T ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCC-----------------CCCEEEEEECCCCCEEEEEeCCCE
Confidence 457788899888666544 67877776654 3332211 012356677777777776666777
Q ss_pred EEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEE-C-CcEEEEcCCCeEEEEEeeccCCCCceeeEEE
Q psy8782 198 IKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGD-F-NLIRRIMTDGTVRTVVRLNVTRVAYRYHIAY 275 (482)
Q Consensus 198 i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D-~-~~I~~i~~~G~v~~~~g~~~~~~~~p~giav 275 (482)
+....-++..... ....-.....+++.|+|..+++- . +.|+.++.+++....+.. .-.....+++
T Consensus 368 v~~~~~~~~~~~~----------~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~---~~~~v~~~~~ 434 (577)
T 2ymu_A 368 VKLWNRNGQLLQT----------LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG---HSSSVWGVAF 434 (577)
T ss_dssp EEEEETTCCEEEE----------EECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEEEC---CSSCEEEEEE
T ss_pred EEEEcCCCCEEEE----------ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEecC---CCCCeEEEEE
Confidence 7766544432110 11112346789999999755544 4 678889988876655432 1234578999
Q ss_pred eCCCCeEEEEeCCCCEEEEEecCCccCCCCCc-EEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEE
Q psy8782 276 SPLDGTLYISDPESHQILRVKNAMDFSAPDYN-VEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFA 354 (482)
Q Consensus 276 d~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~-~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyva 354 (482)
+| ++.+.++-...+.|+.++. ++. +..+.+. -.....++++++|.+.++
T Consensus 435 s~-d~~~l~~~~~d~~v~~w~~-------~~~~~~~~~~~----------------------~~~v~~~~~spd~~~las 484 (577)
T 2ymu_A 435 SP-DDQTIASASDDKTVKLWNR-------NGQLLQTLTGH----------------------SSSVRGVAFSPDGQTIAS 484 (577)
T ss_dssp CT-TSSEEEEEETTSEEEEEET-------TSCEEEEEECC----------------------SSCEEEEEECTTSCEEEE
T ss_pred CC-CCCEEEEEcCCCEEEEEEC-------CCCEEEEEcCC----------------------CCCEEEEEEcCCCCEEEE
Confidence 99 6666666666788888883 443 3333221 123567999999987765
Q ss_pred ECC-C-EEEEcCCCcEE
Q psy8782 355 DGT-N-IRMVDRDGIVT 369 (482)
Q Consensus 355 D~~-n-Ir~i~~~G~i~ 369 (482)
-.. . |+..+.+|...
T Consensus 485 ~~~d~~i~iw~~~~~~~ 501 (577)
T 2ymu_A 485 ASDDKTVKLWNRNGQLL 501 (577)
T ss_dssp EETTSEEEEEETTSCEE
T ss_pred EeCCCEEEEEcCCCCEE
Confidence 443 3 88888888743
No 109
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=98.40 E-value=0.00053 Score=71.86 Aligned_cols=192 Identities=16% Similarity=0.213 Sum_probs=119.4
Q ss_pred CCceEEEEcCCCcEEEEe-C-CcEEEEcCCCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCCCe
Q psy8782 120 LAPVALATAPDGSLFVGD-F-NLIRRIMTDGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKPRI 197 (482)
Q Consensus 120 ~~P~glavd~~G~lyvaD-~-~~Irki~~~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~~~ 197 (482)
.....+++.++|.++++- . +.|+..+.+++......... .....+++.+++..+.....++.
T Consensus 181 ~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~----------------~~v~~~~~s~dg~~l~~~~~d~~ 244 (577)
T 2ymu_A 181 SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS----------------SSVRGVAFSPDGQTIASASDDKT 244 (577)
T ss_dssp SCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCS----------------SCEEEEEECTTSSCEEEEETTSC
T ss_pred cceeeeeecCCCCEEEEEcCCCEEEEEeCCCcEEEEEecCC----------------CCEEEEEECCCCCEEEEEeCCCE
Confidence 345678888888865544 3 67887888776554332110 12356677777777777777777
Q ss_pred EEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC--CcEEEEcCCCeEEEEEeeccCCCCceeeEEE
Q psy8782 198 IKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF--NLIRRIMTDGTVRTVVRLNVTRVAYRYHIAY 275 (482)
Q Consensus 198 i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~--~~I~~i~~~G~v~~~~g~~~~~~~~p~giav 275 (482)
+.....+++.... ....-.....+++.|+|..+++-. +.|+.++.+++....+. ........+++
T Consensus 245 i~~w~~~~~~~~~----------~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~---~h~~~v~~~~~ 311 (577)
T 2ymu_A 245 VKLWNRNGQLLQT----------LTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLT---GHSSSVWGVAF 311 (577)
T ss_dssp EEEECTTSCEEEE----------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEEC---CCSSCEEEEEE
T ss_pred EEEEeCCCCEEEE----------EecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEe---cCCCCeEEEEE
Confidence 7776554443210 111223457899999997766554 78999998888766553 22335678999
Q ss_pred eCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEE
Q psy8782 276 SPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFAD 355 (482)
Q Consensus 276 d~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD 355 (482)
+| ++.+.++-...+.|+.++.. ...+..+.+. -.....+++.++|...++-
T Consensus 312 ~~-~~~~l~t~~~d~~i~~w~~~------~~~~~~~~~~----------------------~~~v~~~~~s~~g~~l~~~ 362 (577)
T 2ymu_A 312 SP-DGQTIASASDDKTVKLWNRN------GQHLQTLTGH----------------------SSSVWGVAFSPDGQTIASA 362 (577)
T ss_dssp CT-TSSEEEEEETTSCEEEEETT------SCEEEEECCC----------------------SSCEEEEEECTTSSEEEEE
T ss_pred CC-CCCEEEEEeCCCeEEEEeCC------CCeeEEEeCC----------------------CCCEEEEEECCCCCEEEEE
Confidence 99 77777766667888888741 2223333221 1235678888888765543
Q ss_pred C-CC-EEEEcCCCcEE
Q psy8782 356 G-TN-IRMVDRDGIVT 369 (482)
Q Consensus 356 ~-~n-Ir~i~~~G~i~ 369 (482)
. .. |+..+.++...
T Consensus 363 ~~dg~v~~~~~~~~~~ 378 (577)
T 2ymu_A 363 SDDKTVKLWNRNGQLL 378 (577)
T ss_dssp ETTSEEEEEETTCCEE
T ss_pred eCCCEEEEEcCCCCEE
Confidence 3 33 88888777643
No 110
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.40 E-value=0.00017 Score=73.91 Aligned_cols=70 Identities=16% Similarity=0.122 Sum_probs=49.3
Q ss_pred CccEEEEcCCC-CEEEEEC-----------CcEEEEcC-CCeEEEEEeec-cCC---CCceeeEEEeCCCCeEEEEeCC-
Q psy8782 227 APVALATAPDG-SLFVGDF-----------NLIRRIMT-DGTVRTVVRLN-VTR---VAYRYHIAYSPLDGTLYISDPE- 288 (482)
Q Consensus 227 ~P~giavd~~G-~lyv~D~-----------~~I~~i~~-~G~v~~~~g~~-~~~---~~~p~giavd~~~g~lyVaD~~- 288 (482)
.| +|+++||| .|||++. +.|.+||+ ++++...+..+ ... ...|.+++++|+...|||++..
T Consensus 120 ~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~ 198 (426)
T 3c75_H 120 LP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSP 198 (426)
T ss_dssp SC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSS
T ss_pred CC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCC
Confidence 46 77777776 5777763 46888885 45665544332 111 2579999999966699999875
Q ss_pred CCEEEEEec
Q psy8782 289 SHQILRVKN 297 (482)
Q Consensus 289 n~~I~~~~~ 297 (482)
.+.|..||.
T Consensus 199 ~~~VsVID~ 207 (426)
T 3c75_H 199 APAVGVVDL 207 (426)
T ss_dssp SCEEEEEET
T ss_pred CCeEEEEEC
Confidence 789999996
No 111
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.35 E-value=0.00012 Score=73.81 Aligned_cols=137 Identities=16% Similarity=0.138 Sum_probs=80.6
Q ss_pred cCCC-cEEEEeC------CcEEEEcCC-CeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcC-----
Q psy8782 128 APDG-SLFVGDF------NLIRRIMTD-GTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNK----- 194 (482)
Q Consensus 128 d~~G-~lyvaD~------~~Irki~~~-G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~----- 194 (482)
.|+| .+||+|. ++|.+||.+ +++...+..| ..|. +++++++..+|+++.
T Consensus 41 ~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG-----------------~~P~-va~spDG~~lyVan~~~~r~ 102 (386)
T 3sjl_D 41 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG-----------------FLPN-PVVADDGSFIAHASTVFSRI 102 (386)
T ss_dssp CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC-----------------SSCE-EEECTTSSCEEEEEEEEEET
T ss_pred CCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECC-----------------CCCc-EEECCCCCEEEEEccccccc
Confidence 4565 5999996 489999874 7766544443 2474 999999999999873
Q ss_pred -----CCeEEEEcC-CCcccc-CCCcCCCCCCCceeecCCccEEEEcCCC-CEEEEEC---CcEEEEcC-CCeEEEEEee
Q psy8782 195 -----PRIIKTTLG-DGHQRP-LDCKDCNGEAGPKQRLLAPVALATAPDG-SLFVGDF---NLIRRIMT-DGTVRTVVRL 262 (482)
Q Consensus 195 -----~~~i~~~~g-~G~~~~-~~~~~~~g~~~~~~~l~~P~giavd~~G-~lyv~D~---~~I~~i~~-~G~v~~~~g~ 262 (482)
...+..+.. +++... .... .+ .....-..|.+++++||| .|||+.. +.|..||. ++++...+..
T Consensus 103 ~~G~~~~~VsviD~~t~~v~~~I~v~--~g--~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v 178 (386)
T 3sjl_D 103 ARGERTDYVEVFDPVTLLPTADIELP--DA--PRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV 178 (386)
T ss_dssp TEEEEEEEEEEECTTTCCEEEEEEET--TC--CCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC
T ss_pred ccCCCCCEEEEEECCCCeEEEEEECC--Cc--cccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEEC
Confidence 234554432 222210 0000 00 000112379999999999 5999985 68999984 5677665543
Q ss_pred ccCCCCceee----EEEeCCCCeEEEEeC
Q psy8782 263 NVTRVAYRYH----IAYSPLDGTLYISDP 287 (482)
Q Consensus 263 ~~~~~~~p~g----iavd~~~g~lyVaD~ 287 (482)
......+|.+ +++.+ +|.+.+.+.
T Consensus 179 ~g~~~~~P~g~~~~~~~~~-DG~~~~v~~ 206 (386)
T 3sjl_D 179 PDCYHIFPTAPDTFFMHCR-DGSLAKVAF 206 (386)
T ss_dssp CSEEEEEEEETTEEEEEET-TSCEEEEEC
T ss_pred CCcceeecCCCceeEEECC-CCCEEEEEC
Confidence 2111223444 35566 454444444
No 112
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=98.33 E-value=3.9e-05 Score=75.08 Aligned_cols=172 Identities=15% Similarity=0.194 Sum_probs=102.8
Q ss_pred cCCCcEEEEeC---CcEEEEcCCCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCC---------
Q psy8782 128 APDGSLFVGDF---NLIRRIMTDGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKP--------- 195 (482)
Q Consensus 128 d~~G~lyvaD~---~~Irki~~~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~--------- 195 (482)
..++.||++.. ++|.|++.+|.-.+.+.... + -.+.++++.||.++..
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~~~------------------~--~~i~~~g~~Iyy~~~~~~~~~~~~~ 82 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNIDGSNIHKLSNDT------------------A--MYINADKNYVYYVRNNNQKITSQTF 82 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETTSCSCEEEEEEE------------------E--EEEEECSSEEEEEEECC------CC
T ss_pred EeCCEEEEEeCCCCceEEEEcCCCCCCEEccCCc------------------e--eeEEEcCCEEEEEECCCCcccccce
Confidence 35778999974 89999999985333222110 1 1224556677766432
Q ss_pred -----CeEEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcCC-CCEEEEE---C--CcEEEEcCCCeEEEEEeecc
Q psy8782 196 -----RIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPD-GSLFVGD---F--NLIRRIMTDGTVRTVVRLNV 264 (482)
Q Consensus 196 -----~~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~-G~lyv~D---~--~~I~~i~~~G~v~~~~g~~~ 264 (482)
..|..+.-.|.. ...|..-.+.++.++ +.||++| . ..|++++.+|.-.+.+-...
T Consensus 83 ~~~n~~~Iy~i~~dg~~--------------~~~l~~~~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~ 148 (302)
T 3s25_A 83 FSYDRNSLCRIKRNGHG--------------STVLDPDPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHY 148 (302)
T ss_dssp SSCCSEEEEEEETTSCC--------------CEEEECSCEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSC
T ss_pred eccCCCeEEEEeCCCCc--------------ceEeecCCccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCC
Confidence 233333333321 122333233344443 5899998 3 58999999986544443221
Q ss_pred CCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCc-EEEEecCCcccCCCCCCccCCCccccccccCCcceE
Q psy8782 265 TRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYN-VEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGV 343 (482)
Q Consensus 265 ~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~-~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~gi 343 (482)
. +++++.++.||+++.+..+|+++++ +|. .+.+.. .+..+
T Consensus 149 ~-------~~~~~~g~~iy~t~~g~~~Iy~~~l-------~g~~~~~l~~-------------------------~~~~~ 189 (302)
T 3s25_A 149 L-------FTCNTSDRYFYYNNPKNGQLYRYDT-------ASQSEALFYD-------------------------CNCYK 189 (302)
T ss_dssp C-------CCSEEETTEEEEECTTTCCEEEEET-------TTTEEEEEEC-------------------------SCEEE
T ss_pred c-------eEeeEECCEEEEEeCCCceEEEEEC-------CCCCEEEEeC-------------------------CCccc
Confidence 1 3456667899999998899999994 444 333321 11123
Q ss_pred EEeC-CCcEEEEECCC---EEEEcCCCcEEEEE
Q psy8782 344 AVSA-DNILYFADGTN---IRMVDRDGIVTTVI 372 (482)
Q Consensus 344 avd~-~G~lyvaD~~n---Ir~i~~~G~i~ti~ 372 (482)
++.| .+.||+++... |.+++.+|.-.+++
T Consensus 190 ~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~L 222 (302)
T 3s25_A 190 PVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVL 222 (302)
T ss_dssp EEEEETTEEEEEEGGGTTEEEEECSSSCCCEEC
T ss_pred eeeecCCEEEEEEcCCCcEEEEEECCCCCeEEE
Confidence 3554 57899999753 99999988755554
No 113
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=98.33 E-value=0.00052 Score=66.07 Aligned_cols=109 Identities=15% Similarity=0.146 Sum_probs=70.3
Q ss_pred CCceEEEecCCCeEEEEcC-CCeEEEEc-CCCcccc-CCCcCCCCCCCceeecCCccEEEEcCCC-CEEEEE--------
Q psy8782 176 SPSGILQKGDGSNIYLKNK-PRIIKTTL-GDGHQRP-LDCKDCNGEAGPKQRLLAPVALATAPDG-SLFVGD-------- 243 (482)
Q Consensus 176 ~P~gi~~~~~g~~lyi~d~-~~~i~~~~-g~G~~~~-~~~~~~~g~~~~~~~l~~P~giavd~~G-~lyv~D-------- 243 (482)
.|.++.+++++..+|++.. .+.+..+. .+++... ... .. ....-..|.+++++++| .||+++
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~---~~---~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~ 108 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDL---ST---PEERVKSLFGAALSPDGKTLAIYESPVRLELT 108 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEEC---CB---TTEEEECTTCEEECTTSSEEEEEEEEEEECSS
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEc---CC---cccccccccceEECCCCCEEEEEecccccccc
Confidence 3788888888888888765 45555553 3343211 000 00 00011268899999999 688985
Q ss_pred -----CCcEEEEcCC-CeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEec
Q psy8782 244 -----FNLIRRIMTD-GTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKN 297 (482)
Q Consensus 244 -----~~~I~~i~~~-G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~ 297 (482)
.+.|++++.+ ++....+.. ...|.+++++|++..||++ ++.|+.++.
T Consensus 109 ~~~~~~~~i~v~d~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~~~---~~~i~~~d~ 161 (337)
T 1pby_B 109 HFEVQPTRVALYDAETLSRRKAFEA----PRQITMLAWARDGSKLYGL---GRDLHVMDP 161 (337)
T ss_dssp CEEECCCEEEEEETTTTEEEEEEEC----CSSCCCEEECTTSSCEEEE---SSSEEEEET
T ss_pred cccccCceEEEEECCCCcEEEEEeC----CCCcceeEECCCCCEEEEe---CCeEEEEEC
Confidence 3789999864 555544432 2358899999944469998 467888885
No 114
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.32 E-value=0.00035 Score=70.27 Aligned_cols=71 Identities=8% Similarity=0.020 Sum_probs=46.6
Q ss_pred CceEEEEcCCCc-EEEEeC-----------CcEEEEcCC-CeEEEEEeeC-CCcccCCCccccccccccCCceEEEecCC
Q psy8782 121 APVALATAPDGS-LFVGDF-----------NLIRRIMTD-GTVRTVVRLK-NQKFEKFPKILTSCFLSLSPSGILQKGDG 186 (482)
Q Consensus 121 ~P~glavd~~G~-lyvaD~-----------~~Irki~~~-G~v~ti~g~g-~~~~~~~~~~~~~~~~~~~P~gi~~~~~g 186 (482)
.| ++++.|||. |||++. +.|.+++.. +++...+..+ ...+ .....|.+++++++|
T Consensus 68 ~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~----------~~g~~p~~~~~spDG 136 (373)
T 2mad_H 68 LP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRF----------DVGPYSWMNANTPNN 136 (373)
T ss_pred CC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCcccc----------ccCCCccceEECCCC
Confidence 57 999999986 999973 568888874 4444322222 1110 001358899999999
Q ss_pred CeEEEEcC--CCeEEEEc
Q psy8782 187 SNIYLKNK--PRIIKTTL 202 (482)
Q Consensus 187 ~~lyi~d~--~~~i~~~~ 202 (482)
..||+++. ...+..+.
T Consensus 137 ~~l~v~n~~~~~~v~viD 154 (373)
T 2mad_H 137 ADLLFFQFAAGPAVGLVV 154 (373)
T ss_pred CEEEEEecCCCCeEEEEE
Confidence 99999874 35566555
No 115
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.30 E-value=0.00024 Score=66.84 Aligned_cols=150 Identities=15% Similarity=0.136 Sum_probs=100.9
Q ss_pred CceEEEEcCCCcEEEEeC--CcEEEEcC-CCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCCCe
Q psy8782 121 APVALATAPDGSLFVGDF--NLIRRIMT-DGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKPRI 197 (482)
Q Consensus 121 ~P~glavd~~G~lyvaD~--~~Irki~~-~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~~~ 197 (482)
.+.|++++ .+.||+++. +++.++|+ +.++..-+..+ ..+.|+. .+++.||++|....
T Consensus 66 fgeGi~~~-~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~-----------------~~Gwglt--~dg~~L~vSdgs~~ 125 (243)
T 3mbr_X 66 FGAGIVAW-RDRLIQLTWRNHEGFVYDLATLTPRARFRYP-----------------GEGWALT--SDDSHLYMSDGTAV 125 (243)
T ss_dssp CEEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEEEECS-----------------SCCCEEE--ECSSCEEEECSSSE
T ss_pred ceeEEEEe-CCEEEEEEeeCCEEEEEECCcCcEEEEEeCC-----------------CCceEEe--eCCCEEEEECCCCe
Confidence 34677777 478999996 89999997 46655433221 1234444 55778999998777
Q ss_pred EEEEcCC-Cccc-cCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC--CcEEEEcC-CCeEEEEEeecc--------
Q psy8782 198 IKTTLGD-GHQR-PLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF--NLIRRIMT-DGTVRTVVRLNV-------- 264 (482)
Q Consensus 198 i~~~~g~-G~~~-~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~--~~I~~i~~-~G~v~~~~g~~~-------- 264 (482)
+..+... .+.. ..... . ....+..+..|... +|.||+..+ +.|.+||| +|++...+....
T Consensus 126 l~~iDp~t~~~~~~I~V~-~-----~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~ 198 (243)
T 3mbr_X 126 IRKLDPDTLQQVGSIKVT-A-----GGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADAL 198 (243)
T ss_dssp EEEECTTTCCEEEEEECE-E-----TTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSC
T ss_pred EEEEeCCCCeEEEEEEEc-c-----CCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccc
Confidence 7766532 2211 00000 0 11233455566655 699999997 89999996 789988887541
Q ss_pred --CCCCceeeEEEeCCCCeEEEEeCCCCEEEEEec
Q psy8782 265 --TRVAYRYHIAYSPLDGTLYISDPESHQILRVKN 297 (482)
Q Consensus 265 --~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~ 297 (482)
....-|+|||++|..+.|||+...=.+++.+..
T Consensus 199 ~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~~v~~ 233 (243)
T 3mbr_X 199 TDSTNDVLNGIAFDAEHDRLFVTGKRWPMLYEIRL 233 (243)
T ss_dssp CCTTSSCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred cCCcCCceEEEEEcCCCCEEEEECCCCCcEEEEEE
Confidence 133578999999978899999987788888764
No 116
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.29 E-value=0.00014 Score=74.52 Aligned_cols=203 Identities=17% Similarity=0.119 Sum_probs=113.2
Q ss_pred CceEEEEcCCCc-EEEEeC-----------CcEEEEcCC-CeEEEEEeeC-CCcccCCCccccccccccCCceEEEecCC
Q psy8782 121 APVALATAPDGS-LFVGDF-----------NLIRRIMTD-GTVRTVVRLK-NQKFEKFPKILTSCFLSLSPSGILQKGDG 186 (482)
Q Consensus 121 ~P~glavd~~G~-lyvaD~-----------~~Irki~~~-G~v~ti~g~g-~~~~~~~~~~~~~~~~~~~P~gi~~~~~g 186 (482)
.| +|+++|||. |||++. +.|..||.. +++..-+..+ ...+ .....|.++++++|+
T Consensus 120 ~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~----------~~g~~P~~~~~spDG 188 (426)
T 3c75_H 120 LP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRF----------LVGTYQWMNALTPDN 188 (426)
T ss_dssp SC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCC----------CBSCCGGGSEECTTS
T ss_pred CC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcccc----------ccCCCcceEEEcCCC
Confidence 58 999999986 999983 569999874 6655433222 1110 001358999999999
Q ss_pred CeEEEEcC--CCeEEEEc-CCCccc-cCCCcCCCCCCCceeecCCccE----EEEcCCCCEEEEEC--------------
Q psy8782 187 SNIYLKNK--PRIIKTTL-GDGHQR-PLDCKDCNGEAGPKQRLLAPVA----LATAPDGSLFVGDF-------------- 244 (482)
Q Consensus 187 ~~lyi~d~--~~~i~~~~-g~G~~~-~~~~~~~~g~~~~~~~l~~P~g----iavd~~G~lyv~D~-------------- 244 (482)
..+|+++. .+.+..+. .+++.. .....+| ....|.+ +++.++|.+.+.+.
T Consensus 189 k~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~--------~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~ 260 (426)
T 3c75_H 189 KNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC--------YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFH 260 (426)
T ss_dssp SEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--------EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCS
T ss_pred CEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc--------eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeec
Confidence 99999874 34454443 233221 0000000 0111222 44444444444333
Q ss_pred -------------------------CcEEEEcCCCeEEEEEeecc-------CCCCceee---EEEeCCCCeEEEEeC--
Q psy8782 245 -------------------------NLIRRIMTDGTVRTVVRLNV-------TRVAYRYH---IAYSPLDGTLYISDP-- 287 (482)
Q Consensus 245 -------------------------~~I~~i~~~G~v~~~~g~~~-------~~~~~p~g---iavd~~~g~lyVaD~-- 287 (482)
++|..++..+...++..... ..-..|.+ ++++++.+.|||++.
T Consensus 261 v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~ 340 (426)
T 3c75_H 261 TEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQR 340 (426)
T ss_dssp CTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEEC
T ss_pred cCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEeccc
Confidence 33334433221111111000 00113555 899996679999974
Q ss_pred -------CCCEEEEEecCCccCCCCCc-EEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCc--EEEEEC-
Q psy8782 288 -------ESHQILRVKNAMDFSAPDYN-VEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNI--LYFADG- 356 (482)
Q Consensus 288 -------~n~~I~~~~~~~~~~~~~g~-~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~--lyvaD~- 356 (482)
..+.|..||.. +.+ +..+.. | ..|.+|+++++|. +|++..
T Consensus 341 ~~gthk~~s~~VsVID~~------T~kvv~~I~v---------------g--------~~P~gia~spDg~~~lyv~n~~ 391 (426)
T 3c75_H 341 DEWKHKAASRFVVVLNAE------TGERINKIEL---------------G--------HEIDSINVSQDAEPLLYALSAG 391 (426)
T ss_dssp CTTCTTSCEEEEEEEETT------TCCEEEEEEE---------------E--------EEECEEEECCSSSCEEEEEETT
T ss_pred ccccccCCCCEEEEEECC------CCeEEEEEEC---------------C--------CCcCeEEEccCCCEEEEEEcCC
Confidence 23579999952 333 223221 0 1499999999986 888885
Q ss_pred CC-EEEEcC-CCcEEEE
Q psy8782 357 TN-IRMVDR-DGIVTTV 371 (482)
Q Consensus 357 ~n-Ir~i~~-~G~i~ti 371 (482)
.+ |.+||. ++++..-
T Consensus 392 s~~VsVID~~t~kvv~t 408 (426)
T 3c75_H 392 TQTLHIYDAATGEELRS 408 (426)
T ss_dssp TTEEEEEETTTCCEEEE
T ss_pred CCeEEEEECCCCCEEEE
Confidence 34 999996 5665533
No 117
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.22 E-value=9.9e-05 Score=70.20 Aligned_cols=149 Identities=12% Similarity=0.105 Sum_probs=98.3
Q ss_pred CceEEEEcCCCcEEEEeC--CcEEEEcCC-CeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCCCe
Q psy8782 121 APVALATAPDGSLFVGDF--NLIRRIMTD-GTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKPRI 197 (482)
Q Consensus 121 ~P~glavd~~G~lyvaD~--~~Irki~~~-G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~~~ 197 (482)
...||+++ .+.||++.. +++.++|++ +++..-+..+ +.|..+..+++.||++|....
T Consensus 88 FgeGit~~-g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~-------------------~eG~glt~dg~~L~~SdGs~~ 147 (262)
T 3nol_A 88 FGEGISDW-KDKIVGLTWKNGLGFVWNIRNLRQVRSFNYD-------------------GEGWGLTHNDQYLIMSDGTPV 147 (262)
T ss_dssp CEEEEEEE-TTEEEEEESSSSEEEEEETTTCCEEEEEECS-------------------SCCCCEEECSSCEEECCSSSE
T ss_pred ceeEEEEe-CCEEEEEEeeCCEEEEEECccCcEEEEEECC-------------------CCceEEecCCCEEEEECCCCe
Confidence 34667887 458999996 899999974 6655433221 222333345677888886666
Q ss_pred EEEEcCC-Cccc-cCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC--CcEEEEcC-CCeEEEEEeecc--------
Q psy8782 198 IKTTLGD-GHQR-PLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF--NLIRRIMT-DGTVRTVVRLNV-------- 264 (482)
Q Consensus 198 i~~~~g~-G~~~-~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~--~~I~~i~~-~G~v~~~~g~~~-------- 264 (482)
+..+... .+.. ..... . ....+..++.|... +|.||+..+ +.|.+||| +|++...+....
T Consensus 148 i~~iDp~T~~v~~~I~V~-~-----~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~ 220 (262)
T 3nol_A 148 LRFLDPESLTPVRTITVT-A-----HGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPL 220 (262)
T ss_dssp EEEECTTTCSEEEEEECE-E-----TTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSC
T ss_pred EEEEcCCCCeEEEEEEec-c-----CCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccc
Confidence 6655432 2221 00000 0 11234556667765 799999998 89999996 789988886531
Q ss_pred -CCCCceeeEEEeCCCCeEEEEeCCCCEEEEEe
Q psy8782 265 -TRVAYRYHIAYSPLDGTLYISDPESHQILRVK 296 (482)
Q Consensus 265 -~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~ 296 (482)
....-|+|||++|..+.|||+...=.+++.+.
T Consensus 221 ~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~ev~ 253 (262)
T 3nol_A 221 PSPIDVLNGIAWDKEHHRLFVTGKLWPKVFEIT 253 (262)
T ss_dssp CSSCCCEEEEEEETTTTEEEEEETTCSEEEEEE
T ss_pred cCcCCceEEEEEcCCCCEEEEECCCCCceEEEE
Confidence 12357899999997889999998777887776
No 118
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=98.19 E-value=0.00017 Score=74.66 Aligned_cols=257 Identities=16% Similarity=0.148 Sum_probs=131.2
Q ss_pred cccCCCeEEecCCc-eEEEeeCCCeEEEEeccCccC--CCC-Cc--CCCCCCcCcccCCCceEEEEcCC----CcEEEEe
Q psy8782 68 YNFHEGILQKGDGS-NIYLKNKPRIIKTTLGDGHQR--PLD-CK--DCNGEAGPKQRLLAPVALATAPD----GSLFVGD 137 (482)
Q Consensus 68 ~~~~~gil~~gdG~-~~~~~~~~~~i~tv~G~G~~~--~~~-~~--~~~G~~~~~~~l~~P~glavd~~----G~lyvaD 137 (482)
|+.|.+|....||+ ++++.+..+.|..+..+|... .+. -. ...|.. ......+.+||++|+ +.|||+-
T Consensus 13 L~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~--~~~e~Gllgia~~P~f~~n~~lYv~y 90 (463)
T 2wg3_C 13 LRQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIK--GGDERGLLSLAFHPNYKKNGKLYVSY 90 (463)
T ss_dssp ESSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCS--SSCCCSEEEEEECTTHHHHCEEEEEE
T ss_pred CCCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCcc--ccCCCcceeeEeCCCCcCCCEEEEEE
Confidence 45566777777886 677777888888886544321 110 00 001100 012356789999996 8999985
Q ss_pred C--------------CcEEEEcCC-C--------eEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcC
Q psy8782 138 F--------------NLIRRIMTD-G--------TVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNK 194 (482)
Q Consensus 138 ~--------------~~Irki~~~-G--------~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~ 194 (482)
+ ++|.|+..+ + ..+.++...... -......|++.+|| .|||+-.
T Consensus 91 t~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~------------~~H~g~~l~fgpDG-~LYv~~G 157 (463)
T 2wg3_C 91 TTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELH------------RKHLGGQLLFGPDG-FLYIILG 157 (463)
T ss_dssp EECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESS------------SSSCEEEEEECTTS-CEEEEEC
T ss_pred eCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCC------------CcccCCcEeECCCC-cEEEEeC
Confidence 4 267666432 1 122333211000 01123456666666 7787521
Q ss_pred ------------------CCeEEEEcCCCc------cccCCCcCCCCCC----CceeecCCccEEEEcCC-----C--CE
Q psy8782 195 ------------------PRIIKTTLGDGH------QRPLDCKDCNGEA----GPKQRLLAPVALATAPD-----G--SL 239 (482)
Q Consensus 195 ------------------~~~i~~~~g~G~------~~~~~~~~~~g~~----~~~~~l~~P~giavd~~-----G--~l 239 (482)
.+.|..+..+|. ..|.+.+..+... .-...+..|.+|++|+. | .+
T Consensus 158 d~~~~~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~tg~~~G~l~~ 237 (463)
T 2wg3_C 158 DGMITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHPTDININLTI 237 (463)
T ss_dssp CTTCCHHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESSCSSTTCSEEE
T ss_pred CCCCCCCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCCCCCcccceEE
Confidence 134555555553 1222211111111 13456889999999996 5 46
Q ss_pred EEEEC-C------cEEEEcCCCeE---EEEEeeccCCCCceeeEEEeC------CCCeEEEEeCCCCEEEEEecCCccCC
Q psy8782 240 FVGDF-N------LIRRIMTDGTV---RTVVRLNVTRVAYRYHIAYSP------LDGTLYISDPESHQILRVKNAMDFSA 303 (482)
Q Consensus 240 yv~D~-~------~I~~i~~~G~v---~~~~g~~~~~~~~p~giavd~------~~g~lyVaD~~n~~I~~~~~~~~~~~ 303 (482)
|++|. . .|..+.+-+.. ..++......-..|.|+++-. ..|.++++|.. ++|+++......
T Consensus 238 ~~~D~~G~~~~~~ei~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~~-g~i~~~~~~~~~-- 314 (463)
T 2wg3_C 238 LCSDSNGKNRSSARILQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFGDRN-GNFLTLQQSPVT-- 314 (463)
T ss_dssp EEECC------CEEEEEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEEEETT-SCEEEEEC------
T ss_pred EecccCCCCCCCCeEeeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEEecCC-CcEEEEEeCCCC--
Confidence 77885 1 23333221110 001110011113678888843 23569999986 789988753110
Q ss_pred CCCcEEEE-ecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEEC
Q psy8782 304 PDYNVEPA-VGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADG 356 (482)
Q Consensus 304 ~~g~~~~v-aG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~ 356 (482)
.....+.+ .|.... +. ......|.+++++++|.|||+|.
T Consensus 315 ~~~~~~~~~~g~~~~--------~~------~~~~~r~~~v~~~pdG~Lyv~~~ 354 (463)
T 2wg3_C 315 KQWQEKPLCLGTSGS--------CR------GYFSGHILGFGEDELGEVYILSS 354 (463)
T ss_dssp -CCEEEEECEEETTS--------SC------SCCCSEEEEEEECTTCCEEEEEE
T ss_pred ceeeEEEeecCCccc--------cc------ccccCcceEEEECCCCCEEEEec
Confidence 01112222 121110 00 11245799999999999999996
No 119
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.18 E-value=0.00014 Score=69.36 Aligned_cols=148 Identities=15% Similarity=0.105 Sum_probs=100.0
Q ss_pred ceEEEEcCCCcEEEEeC--CcEEEEcCC-CeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCCCeE
Q psy8782 122 PVALATAPDGSLFVGDF--NLIRRIMTD-GTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKPRII 198 (482)
Q Consensus 122 P~glavd~~G~lyvaD~--~~Irki~~~-G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~~~i 198 (482)
..||+++. +.||++.. +++.++|++ +++..-+... ..+.|++ .+++.||++|....+
T Consensus 98 geGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~-----------------~eGwGLt--~Dg~~L~vSdGs~~l 157 (268)
T 3nok_A 98 AEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERTTRYS-----------------GEGWGLC--YWNGKLVRSDGGTML 157 (268)
T ss_dssp EEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEEEECS-----------------SCCCCEE--EETTEEEEECSSSEE
T ss_pred eeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEEEeCC-----------------CceeEEe--cCCCEEEEECCCCEE
Confidence 36688874 58999996 899999974 6655433221 1234454 456789999877777
Q ss_pred EEEcC-CCccc-cCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC--CcEEEEcC-CCeEEEEEeecc---------
Q psy8782 199 KTTLG-DGHQR-PLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF--NLIRRIMT-DGTVRTVVRLNV--------- 264 (482)
Q Consensus 199 ~~~~g-~G~~~-~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~--~~I~~i~~-~G~v~~~~g~~~--------- 264 (482)
..+.. +.+.. ..... .....+..+..|... +|.||+..+ +.|.+||+ +|++...+....
T Consensus 158 ~~iDp~T~~v~~~I~V~------~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~ 230 (268)
T 3nok_A 158 TFHEPDGFALVGAVQVK------LRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQV 230 (268)
T ss_dssp EEECTTTCCEEEEEECE------ETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTC
T ss_pred EEEcCCCCeEEEEEEeC------CCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccc
Confidence 76653 22221 00000 011344566677766 799999998 89999996 789988886531
Q ss_pred -CCCCceeeEEEeCCCCeEEEEeCCCCEEEEEe
Q psy8782 265 -TRVAYRYHIAYSPLDGTLYISDPESHQILRVK 296 (482)
Q Consensus 265 -~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~ 296 (482)
....-|+|||++|..+.|||+...=.+++.+.
T Consensus 231 ~~~~~vlNGIA~dp~~~rlfVTGK~Wp~~~ev~ 263 (268)
T 3nok_A 231 TNPEAVLNGIAVEPGSGRIFMTGKLWPRLFEVR 263 (268)
T ss_dssp CCTTCCEEEEEECTTTCCEEEEETTCSEEEEEE
T ss_pred cCcCCceEEEEEcCCCCEEEEeCCCCCceEEEE
Confidence 12347899999997889999998777777775
No 120
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.12 E-value=0.0013 Score=72.33 Aligned_cols=209 Identities=11% Similarity=0.115 Sum_probs=122.7
Q ss_pred CceEEEEcCCCcEEEEeC-CcEEEEcCC-CeEEEEEeeCCCcccCCCccccccccc-cCCceEEEecCCCeEEEEc-CCC
Q psy8782 121 APVALATAPDGSLFVGDF-NLIRRIMTD-GTVRTVVRLKNQKFEKFPKILTSCFLS-LSPSGILQKGDGSNIYLKN-KPR 196 (482)
Q Consensus 121 ~P~glavd~~G~lyvaD~-~~Irki~~~-G~v~ti~g~g~~~~~~~~~~~~~~~~~-~~P~gi~~~~~g~~lyi~d-~~~ 196 (482)
....|+.|++|+|||+-. +.|.++++. +.+..+....... .+..+. .....++.+.++ +||+.. ..+
T Consensus 314 ~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~--------~~~~l~~~~v~~i~~d~~g-~lWigt~~~G 384 (781)
T 3v9f_A 314 SARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQM--------NESSLSNKVVSSVCDDGQG-KLWIGTDGGG 384 (781)
T ss_dssp CEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CC--------CSSCCSSSCEEEEEECTTS-CEEEEEBSSC
T ss_pred eEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCcccc--------ccCCCCCcceEEEEEcCCC-CEEEEeCCCc
Confidence 467899999999999985 889999875 3444432110000 000000 112345555443 677765 344
Q ss_pred eEEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC-CcEEEEcCC-CeEEEEEeeccCCCCceeeEE
Q psy8782 197 IIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF-NLIRRIMTD-GTVRTVVRLNVTRVAYRYHIA 274 (482)
Q Consensus 197 ~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~-~~I~~i~~~-G~v~~~~g~~~~~~~~p~gia 274 (482)
....-..++....+... ....-.....|+.|++|.|||+.. +.+.++++. +++..+. ...........|+
T Consensus 385 l~~~~~~~~~~~~~~~~-------~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~-~~~~~~~~v~~i~ 456 (781)
T 3v9f_A 385 INVFENGKRVAIYNKEN-------RELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIE-LEKNELLDVRVFY 456 (781)
T ss_dssp EEEEETTEEEEECC------------CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECC-STTTCCCCEEEEE
T ss_pred EEEEECCCCeEEEccCC-------CCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEec-cCCCCCCeEEEEE
Confidence 44443333333221100 000113457899999999999987 789999976 5554432 1111223567888
Q ss_pred EeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEE
Q psy8782 275 YSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFA 354 (482)
Q Consensus 275 vd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyva 354 (482)
.++ +|.|||+.. +-+.+++. .++.++.+.... +. ......+..|+.|++|.|||+
T Consensus 457 ~d~-~g~lwigt~--~Gl~~~~~------~~~~~~~~~~~~------------~~----~~~~~~i~~i~~d~~g~lWig 511 (781)
T 3v9f_A 457 EDK-NKKIWIGTH--AGVFVIDL------ASKKVIHHYDTS------------NS----QLLENFVRSIAQDSEGRFWIG 511 (781)
T ss_dssp ECT-TSEEEEEET--TEEEEEES------SSSSCCEEECTT------------TS----SCSCSCEEEEEECTTCCEEEE
T ss_pred ECC-CCCEEEEEC--CceEEEeC------CCCeEEecccCc------------cc----ccccceeEEEEEcCCCCEEEE
Confidence 888 899999976 57999984 233433332110 00 011256788999999999999
Q ss_pred ECC-CEEEEcCCC-cEEEE
Q psy8782 355 DGT-NIRMVDRDG-IVTTV 371 (482)
Q Consensus 355 D~~-nIr~i~~~G-~i~ti 371 (482)
-.+ .+.++++++ .+..+
T Consensus 512 t~~~Gl~~~~~~~~~~~~~ 530 (781)
T 3v9f_A 512 TFGGGVGIYTPDMQLVRKF 530 (781)
T ss_dssp ESSSCEEEECTTCCEEEEE
T ss_pred EcCCCEEEEeCCCCeEEEc
Confidence 874 488899864 45444
No 121
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.08 E-value=0.00062 Score=75.04 Aligned_cols=205 Identities=12% Similarity=0.126 Sum_probs=124.2
Q ss_pred CceEEEEcCCCcEEEEeC-CcEEEEcCC-CeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCCCeE
Q psy8782 121 APVALATAPDGSLFVGDF-NLIRRIMTD-GTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKPRII 198 (482)
Q Consensus 121 ~P~glavd~~G~lyvaD~-~~Irki~~~-G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~~~i 198 (482)
...+|+.|++|+|||+-. +.|.++++. ++++.+...+.. ......++.+.++ +||++...+..
T Consensus 408 ~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~--------------~~~v~~i~~d~~g-~lwigt~~Gl~ 472 (781)
T 3v9f_A 408 SVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNE--------------LLDVRVFYEDKNK-KIWIGTHAGVF 472 (781)
T ss_dssp BEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTC--------------CCCEEEEEECTTS-EEEEEETTEEE
T ss_pred ceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCC--------------CCeEEEEEECCCC-CEEEEECCceE
Confidence 456888999999999987 789999875 666543211000 0112344444443 67777655444
Q ss_pred EEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC-CcEEEEcCCCeEEEEEeecc-CCCCceeeEEEe
Q psy8782 199 KTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF-NLIRRIMTDGTVRTVVRLNV-TRVAYRYHIAYS 276 (482)
Q Consensus 199 ~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~-~~I~~i~~~G~v~~~~g~~~-~~~~~p~giavd 276 (482)
..-..+++........ + .......+..|+.|++|+|||+.. +.+.++++++...+.+.... -.-.....|+.|
T Consensus 473 ~~~~~~~~~~~~~~~~-~----~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d 547 (781)
T 3v9f_A 473 VIDLASKKVIHHYDTS-N----SQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRS 547 (781)
T ss_dssp EEESSSSSCCEEECTT-T----SSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEEC
T ss_pred EEeCCCCeEEecccCc-c----cccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEEC
Confidence 4433444332111000 0 001124577899999999999998 78999998765444433211 112345788888
Q ss_pred CCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEEC
Q psy8782 277 PLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADG 356 (482)
Q Consensus 277 ~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~ 356 (482)
+ +|.||++.. ++-|.+++. .++.+..+.- .+|.+ -+...+|+.|++|+||++-.
T Consensus 548 ~-~g~lWi~T~-~Glv~~~d~------~~~~~~~~~~-------------~~gl~-----~~~i~~i~~d~~g~lW~~t~ 601 (781)
T 3v9f_A 548 S-KGQMWLATG-EGLVCFPSA------RNFDYQVFQR-------------KEGLP-----NTHIRAISEDKNGNIWASTN 601 (781)
T ss_dssp T-TSCEEEEET-TEEEEESCT------TTCCCEEECG-------------GGTCS-----CCCCCEEEECSSSCEEEECS
T ss_pred C-CCCEEEEEC-CCceEEECC------CCCcEEEccc-------------cCCCC-----CceEEEEEECCCCCEEEEcC
Confidence 8 899999986 454488874 2334433310 12211 12346899999999999976
Q ss_pred CCEEEEcCCC-cEEEE
Q psy8782 357 TNIRMVDRDG-IVTTV 371 (482)
Q Consensus 357 ~nIr~i~~~G-~i~ti 371 (482)
..|.+++++. .+..+
T Consensus 602 ~Gl~~~~~~~~~~~~~ 617 (781)
T 3v9f_A 602 TGISCYITSKKCFYTY 617 (781)
T ss_dssp SCEEEEETTTTEEEEE
T ss_pred CceEEEECCCCceEEe
Confidence 6699999864 44443
No 122
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=98.06 E-value=0.0015 Score=65.61 Aligned_cols=209 Identities=8% Similarity=0.069 Sum_probs=122.4
Q ss_pred cccCCCceEEEEcCCCcEEEEeCC-----------------cEEEEcC-CC--eEEEEEeeCCCcccCCCcccccccccc
Q psy8782 116 KQRLLAPVALATAPDGSLFVGDFN-----------------LIRRIMT-DG--TVRTVVRLKNQKFEKFPKILTSCFLSL 175 (482)
Q Consensus 116 ~~~l~~P~glavd~~G~lyvaD~~-----------------~Irki~~-~G--~v~ti~g~g~~~~~~~~~~~~~~~~~~ 175 (482)
...|.+..++.+|+.|.|||.|+. +|..+|. ++ ++.........- ..+ ..
T Consensus 83 ~~~lvsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~-------~~~---~S 152 (381)
T 3q6k_A 83 GKELTSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRL-------VEK---PT 152 (381)
T ss_dssp SCSSSCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGG-------CCC---GG
T ss_pred ccceEEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHh-------ccc---CC
Confidence 457999999999999999999982 2445554 23 444322221100 000 01
Q ss_pred CCceEEEe-c------CCCeEEEEcC--CCeEEEEcCCCccccCCCc--CCCCCC-----Cceee-cCCccEEEEcCC--
Q psy8782 176 SPSGILQK-G------DGSNIYLKNK--PRIIKTTLGDGHQRPLDCK--DCNGEA-----GPKQR-LLAPVALATAPD-- 236 (482)
Q Consensus 176 ~P~gi~~~-~------~g~~lyi~d~--~~~i~~~~g~G~~~~~~~~--~~~g~~-----~~~~~-l~~P~giavd~~-- 236 (482)
.-+.+.++ . ++..+||+|. .++|..-..+|+.....-. ..+... ...-+ ...-.|||++|+
T Consensus 153 ~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~ 232 (381)
T 3q6k_A 153 YFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDS 232 (381)
T ss_dssp GEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCT
T ss_pred ccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcC
Confidence 12566777 2 1456888885 3455544454443111000 001000 01111 236779999986
Q ss_pred ---CCEEEEEC--CcEEEEc----CCCe---EEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCC-ccCC
Q psy8782 237 ---GSLFVGDF--NLIRRIM----TDGT---VRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAM-DFSA 303 (482)
Q Consensus 237 ---G~lyv~D~--~~I~~i~----~~G~---v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~-~~~~ 303 (482)
..||+.-- .+++++. .+.. -.+.+|... ......++++|+.+|.||+++...+.|.+++... .+.
T Consensus 233 ~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg-~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~- 310 (381)
T 3q6k_A 233 EGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRG-KYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLR- 310 (381)
T ss_dssp TSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECC-TTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBC-
T ss_pred CCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecC-CCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccc-
Confidence 37999987 5788885 2221 223334321 1133457888744899999999999999999421 110
Q ss_pred CCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEECC
Q psy8782 304 PDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADGT 357 (482)
Q Consensus 304 ~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~~ 357 (482)
.++..+++- +.+|.+|.+|+++.+|.|||....
T Consensus 311 -~~n~~~l~~--------------------d~~l~~pd~~~i~~~g~Lwv~sn~ 343 (381)
T 3q6k_A 311 -MKNTDVVYT--------------------SSRFVFGTDISVDSKGGLWFMSNG 343 (381)
T ss_dssp -GGGEEEEEE--------------------CTTCCSEEEEEECTTSCEEEEECS
T ss_pred -cCceEEEEE--------------------CCCccccCeEEECCCCeEEEEECc
Confidence 135566652 125899999999999999998753
No 123
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.05 E-value=0.0041 Score=68.57 Aligned_cols=210 Identities=10% Similarity=0.117 Sum_probs=123.5
Q ss_pred CceEEEEcCCCcEEEEeC-CcEEEEcCC-CeEEEEEeeCCCcccCCCcccccc-cc-ccCCceEEEecCCCeEEEEcC-C
Q psy8782 121 APVALATAPDGSLFVGDF-NLIRRIMTD-GTVRTVVRLKNQKFEKFPKILTSC-FL-SLSPSGILQKGDGSNIYLKNK-P 195 (482)
Q Consensus 121 ~P~glavd~~G~lyvaD~-~~Irki~~~-G~v~ti~g~g~~~~~~~~~~~~~~-~~-~~~P~gi~~~~~g~~lyi~d~-~ 195 (482)
...+|+.|++|+|||+-. +.|.++++. +.+..+...... +. .+ ...-..++.+.++..||+... .
T Consensus 358 ~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~----------~~~~l~~~~v~~i~~d~~g~~lWigt~~~ 427 (795)
T 4a2l_A 358 VVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDE----------SARGIGSNNIKAVYVDEKKSLVYIGTHAG 427 (795)
T ss_dssp SEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC----------------CCSCSCEEEEEEETTTTEEEEEETTT
T ss_pred eeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCC----------cccCCCCccEEEEEEcCCCCEEEEEeCcC
Confidence 457899999999999987 689999875 556554311000 00 00 011245555655532787654 3
Q ss_pred CeEEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEECCcEEEEcCCC-eEEEEEeec-cCC--CCcee
Q psy8782 196 RIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDFNLIRRIMTDG-TVRTVVRLN-VTR--VAYRY 271 (482)
Q Consensus 196 ~~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~~~I~~i~~~G-~v~~~~g~~-~~~--~~~p~ 271 (482)
+....-..+++...+... . ..-.-.....|+.|++|+|||+..+.+.+++++. ++..+.... ... -....
T Consensus 428 Gl~~~d~~~~~~~~~~~~--~----~~l~~~~v~~i~~d~~g~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 501 (795)
T 4a2l_A 428 GLSILHRNSGQVENFNQR--N----SQLVNENVYAILPDGEGNLWLGTLSALVRFNPEQRSFTTIEKEKDGTPVVSKQIT 501 (795)
T ss_dssp EEEEEETTTCCEEEECTT--T----SCCSCSCEEEEEECSSSCEEEEESSCEEEEETTTTEEEECCBCTTCCBCCCCCEE
T ss_pred ceeEEeCCCCcEEEeecC--C----CCcCCCeeEEEEECCCCCEEEEecCceeEEeCCCCeEEEccccccccccCCceEE
Confidence 333333334443221100 0 0011135678999999999999988899999764 444332110 011 13567
Q ss_pred eEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcE
Q psy8782 272 HIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNIL 351 (482)
Q Consensus 272 giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~l 351 (482)
.|+.++ +|.|||+.. +-+.+++. ..+.+ .+.... ..++ ..-.....|+.|++|.|
T Consensus 502 ~i~~d~-~g~lWigt~--~Gl~~~~~------~~~~~-~~~~~~----------~~~~-----l~~~~i~~i~~d~~g~l 556 (795)
T 4a2l_A 502 TLFRDS-HKRLWIGGE--EGLSVFKQ------EGLDI-QKASIL----------PVSN-----VTKLFTNCIYEASNGII 556 (795)
T ss_dssp EEEECT-TCCEEEEES--SCEEEEEE------ETTEE-EECCCS----------CSCG-----GGGSCEEEEEECTTSCE
T ss_pred EEEECC-CCCEEEEeC--CceEEEeC------CCCeE-EEecCC----------CCCC-----CCCCeeEEEEECCCCCE
Confidence 888998 999999986 56888874 23333 221100 0011 11235678999999999
Q ss_pred EEEECCCEEEEcCC-CcEEEE
Q psy8782 352 YFADGTNIRMVDRD-GIVTTV 371 (482)
Q Consensus 352 yvaD~~nIr~i~~~-G~i~ti 371 (482)
||+-.+.+.++++. +.+..+
T Consensus 557 WigT~~Gl~~~d~~~~~~~~~ 577 (795)
T 4a2l_A 557 WVGTREGFYCFNEKDKQIKRY 577 (795)
T ss_dssp EEEESSCEEEEETTTTEEEEE
T ss_pred EEEeCCCceeECCCCCcEEEe
Confidence 99987779999875 455544
No 124
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.04 E-value=0.00037 Score=70.03 Aligned_cols=100 Identities=7% Similarity=-0.170 Sum_probs=63.5
Q ss_pred CcEEEEeC--C----cEEEEcCC-CeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcC---------
Q psy8782 131 GSLFVGDF--N----LIRRIMTD-GTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNK--------- 194 (482)
Q Consensus 131 G~lyvaD~--~----~Irki~~~-G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~--------- 194 (482)
..+||++. + +|..||++ +++..-+..| ..| ++++++++..+|+++.
T Consensus 32 ~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG-----------------~~P-~i~~spDg~~lyVan~~~~r~~~G~ 93 (368)
T 1mda_H 32 RRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGA-----------------FLS-LAVAGHSGSDFALASTSFARSAKGK 93 (368)
T ss_dssp TEEEEEECTTTCSSEEEEEEETTTTEEEEEEEEC-----------------TTC-EEEECTTSSCEEEEEEEETTTTSSS
T ss_pred CeEEEECCccCCccceEEEEECCCCeEEEEEeCC-----------------CCC-ceEECCCCCEEEEEcccccccccCC
Confidence 56999987 5 78899875 6665444332 358 9999999999999972
Q ss_pred -CCeEEEEc-CCCcccc-CCCcCCCCCCCceeecCCccEEEEcCCC-CEEEEEC---CcEEE--EcC
Q psy8782 195 -PRIIKTTL-GDGHQRP-LDCKDCNGEAGPKQRLLAPVALATAPDG-SLFVGDF---NLIRR--IMT 252 (482)
Q Consensus 195 -~~~i~~~~-g~G~~~~-~~~~~~~g~~~~~~~l~~P~giavd~~G-~lyv~D~---~~I~~--i~~ 252 (482)
.+.+..+. .+++... ... .+ .........|.+++++||| .|||++. +.|.. +|+
T Consensus 94 ~~~~VsviD~~T~~vv~~I~v---~~-~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~ 156 (368)
T 1mda_H 94 RTDYVEVFDPVTFLPIADIEL---PD-APRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGA 156 (368)
T ss_dssp EEEEEEEECTTTCCEEEEEEE---TT-SCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTT
T ss_pred CCCEEEEEECCCCCEEEEEEC---CC-ccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEch
Confidence 34455553 3333211 000 00 0000012579999999998 8999975 56777 665
No 125
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.01 E-value=0.0016 Score=64.40 Aligned_cols=160 Identities=14% Similarity=0.161 Sum_probs=92.4
Q ss_pred eecCCccEEEE--cCC-CC--EEEEEC-CcEEE--Ec--CCCeE----EEEEeeccCCCCceeeEEEeCCCCeEEEEeCC
Q psy8782 223 QRLLAPVALAT--APD-GS--LFVGDF-NLIRR--IM--TDGTV----RTVVRLNVTRVAYRYHIAYSPLDGTLYISDPE 288 (482)
Q Consensus 223 ~~l~~P~giav--d~~-G~--lyv~D~-~~I~~--i~--~~G~v----~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~ 288 (482)
..+..|.|||. ++. |. +||.+. .++.. +. .+|++ ++.+.. ...|.++++|+..+.|||++..
T Consensus 125 t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l----gsq~EgcvvDd~~g~Lyv~eEd 200 (355)
T 3amr_A 125 TAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM----NSQTEGMAADDEYGRLYIAEED 200 (355)
T ss_dssp CCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC----SSCEEEEEEETTTTEEEEEETT
T ss_pred CCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC----CCCcceEEEcCCCCeEEEeccc
Confidence 44689999999 774 53 788887 55544 32 34433 333333 2469999999888999999998
Q ss_pred CCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccC-CcceEEEeCC----CcEEEEECCC--EEE
Q psy8782 289 SHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLA-YPKGVAVSAD----NILYFADGTN--IRM 361 (482)
Q Consensus 289 n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~-~P~giavd~~----G~lyvaD~~n--Ir~ 361 (482)
.+ |++++..... ...+.+...++. + .|. .|.||++.+. |.|++++.++ .-+
T Consensus 201 ~G-Iw~~da~p~~-~~~~~~v~~~~~--------------g------~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~V 258 (355)
T 3amr_A 201 EA-IWKFSAEPDG-GSNGTVIDRADG--------------R------HLTRDIEGLTIYYAADGKGYLMASSQGNSSYAI 258 (355)
T ss_dssp TE-EEEEECSTTS-CSCCEEEEEBSS--------------S------SBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEE
T ss_pred ce-EEEEeCCcCC-CCCceEEEEecC--------------C------ccccCcceEEEEecCCCCEEEEEEcCCCCEEEE
Confidence 55 9999953210 011222222211 1 132 6899999633 5699999766 666
Q ss_pred EcCCC--cEEEEE--cCCCCCCCCCcCCCCceEEeccccceeEEe--ecCcceEEecccCC
Q psy8782 362 VDRDG--IVTTVI--GNHMHKSHWKPIPCEGTLNIEEVSETMRDI--RHTTGWACYGTGDN 416 (482)
Q Consensus 362 i~~~G--~i~ti~--G~~~~~~~~~~~~~dg~l~v~~~~~~~~~l--~~p~giav~~~g~n 416 (482)
++..+ .+..-+ |.+.. --....+||. .+.... + .+|.|+.+..+|.|
T Consensus 259 ydr~~~~~~vg~f~Ig~~~~--idgv~eTDG~-~v~~~~-----lG~~fP~Gl~V~qDg~n 311 (355)
T 3amr_A 259 YDRQGKNKYVADFRITDGPE--TDGTSDTDGI-DVLGFG-----LGPEYPFGIFVAQDGEN 311 (355)
T ss_dssp EESSTTCCEEEEEEECCCSS--SCCCCSCCCE-EEECSC-----CSTTCTTCEEEEEESSC
T ss_pred EECCCCCcEEEEEEecCCCC--ceeeeccCcc-eEEccc-----cCCCCCCcEEEEecCCc
Confidence 66642 322222 22211 0112345662 122211 3 26999999887755
No 126
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.00 E-value=0.00063 Score=68.60 Aligned_cols=203 Identities=14% Similarity=0.120 Sum_probs=114.4
Q ss_pred CCceEEEEcCCCc-EEEEeC---CcEEEEcC-CCeEEEEEeeCCCcccCCCccccccccccCCce----EEEecCCCeEE
Q psy8782 120 LAPVALATAPDGS-LFVGDF---NLIRRIMT-DGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSG----ILQKGDGSNIY 190 (482)
Q Consensus 120 ~~P~glavd~~G~-lyvaD~---~~Irki~~-~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~g----i~~~~~g~~ly 190 (482)
..|.++++++||. |||+.. +.|..||. ++++...+...... ...|.| +...+||..+|
T Consensus 137 ~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~-------------~~~P~g~~~~~~~~~DG~~~~ 203 (386)
T 3sjl_D 137 TYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCY-------------HIFPTAPDTFFMHCRDGSLAK 203 (386)
T ss_dssp CCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEE-------------EEEEEETTEEEEEETTSCEEE
T ss_pred CCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcc-------------eeecCCCceeEEECCCCCEEE
Confidence 4799999999997 899974 78999987 46665433321100 112444 35667777777
Q ss_pred EEcCC-CeEEEEcCCCccccCCCcCCCCCCCceeecCCccEEEE-cCCCC-EEEEECCcEEEEcCCCeEEEEEeecc---
Q psy8782 191 LKNKP-RIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALAT-APDGS-LFVGDFNLIRRIMTDGTVRTVVRLNV--- 264 (482)
Q Consensus 191 i~d~~-~~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giav-d~~G~-lyv~D~~~I~~i~~~G~v~~~~g~~~--- 264 (482)
+.-.. +.+.... + . .++ ......+..| ++ .++|. +|+++.++|+.++..+...++.....
T Consensus 204 v~~~~~g~v~~~~-~-~--~~~-------~~~~~~~~~~---~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~ 269 (386)
T 3sjl_D 204 VAFGTEGTPEITH-T-E--VFH-------PEDEFLINHP---AYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALT 269 (386)
T ss_dssp EECCSSSCCEEEE-C-C--CCS-------CTTSCBCSCC---EEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSC
T ss_pred EECCCCCeEEEee-c-c--eec-------cccccccccc---eeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccc
Confidence 76432 3321111 1 0 110 0011122222 33 35675 45555577888876543222211100
Q ss_pred C----CCCcee---eEEEeCCCCeEEEEeC---------CCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCC
Q psy8782 265 T----RVAYRY---HIAYSPLDGTLYISDP---------ESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGD 328 (482)
Q Consensus 265 ~----~~~~p~---giavd~~~g~lyVaD~---------~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gd 328 (482)
. .--.|. .+++++..+.|||+.. ..++|..+|. .++++....-. |
T Consensus 270 ~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~------~t~kv~~~i~v------------g- 330 (386)
T 3sjl_D 270 EAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDA------KTGERLAKFEM------------G- 330 (386)
T ss_dssp HHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEET------TTCCEEEEEEE------------E-
T ss_pred cccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEEC------CCCeEEEEEEC------------C-
Confidence 0 001233 3888997889999864 2378999996 34443222110 0
Q ss_pred CccccccccCCcceEEEeCCCc--EEEEECC-C-EEEEcC-CCcEEEEEcCCCC
Q psy8782 329 GAPARDAKLAYPKGVAVSADNI--LYFADGT-N-IRMVDR-DGIVTTVIGNHMH 377 (482)
Q Consensus 329 g~~a~~a~l~~P~giavd~~G~--lyvaD~~-n-Ir~i~~-~G~i~ti~G~~~~ 377 (482)
..|.+|+++++|. ||++... + |.++|. ++++..-+..+..
T Consensus 331 ---------~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~ 375 (386)
T 3sjl_D 331 ---------HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGH 375 (386)
T ss_dssp ---------EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCS
T ss_pred ---------CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCC
Confidence 2488999999985 8888864 3 999986 6776655544443
No 127
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=97.96 E-value=0.0063 Score=60.99 Aligned_cols=69 Identities=14% Similarity=0.107 Sum_probs=51.1
Q ss_pred CccEEEEcCCC-CEEEEEC-----------CcEEEEcCC-CeEEEEEeec-cCC---CCceeeEEEeCCCCeEEEEeCC-
Q psy8782 227 APVALATAPDG-SLFVGDF-----------NLIRRIMTD-GTVRTVVRLN-VTR---VAYRYHIAYSPLDGTLYISDPE- 288 (482)
Q Consensus 227 ~P~giavd~~G-~lyv~D~-----------~~I~~i~~~-G~v~~~~g~~-~~~---~~~p~giavd~~~g~lyVaD~~- 288 (482)
.| +|+++||| .|||++. +.|.++++. +++...+..+ ... ...|.+++++|+...|||+...
T Consensus 68 ~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~ 146 (373)
T 2mad_H 68 LP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAA 146 (373)
T ss_pred CC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCC
Confidence 58 99999998 6999973 568899864 5554443322 111 2579999999966799999865
Q ss_pred CCEEEEEe
Q psy8782 289 SHQILRVK 296 (482)
Q Consensus 289 n~~I~~~~ 296 (482)
.+.|..++
T Consensus 147 ~~~v~viD 154 (373)
T 2mad_H 147 GPAVGLVV 154 (373)
T ss_pred CCeEEEEE
Confidence 68899998
No 128
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=97.93 E-value=6.3e-05 Score=78.84 Aligned_cols=130 Identities=18% Similarity=0.240 Sum_probs=81.4
Q ss_pred cCCCCceeeEEEeCCCCeEEEEeCCC---------------------CEEEEEecCCc-cCCCCCcEEEE--ecCCcccC
Q psy8782 264 VTRVAYRYHIAYSPLDGTLYISDPES---------------------HQILRVKNAMD-FSAPDYNVEPA--VGSGERCL 319 (482)
Q Consensus 264 ~~~~~~p~giavd~~~g~lyVaD~~n---------------------~~I~~~~~~~~-~~~~~g~~~~v--aG~g~~~~ 319 (482)
...+..|.+|+++|.++.||++-++| ++|+++..... ......+++++ +|.....
T Consensus 380 AT~mdRpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~- 458 (592)
T 4a9v_A 380 ATRMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVH- 458 (592)
T ss_dssp CCCEECEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTS-
T ss_pred CccccCccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCccc-
Confidence 35677899999999899999997653 67999975321 00011224433 3432210
Q ss_pred CCCCCccCCCccccccccCCcceEEEeCCCcEEE-EECC-------------CEEEEcC-CCcEEEEEcCC-CCCCCCCc
Q psy8782 320 PGDEAHCGDGAPARDAKLAYPKGVAVSADNILYF-ADGT-------------NIRMVDR-DGIVTTVIGNH-MHKSHWKP 383 (482)
Q Consensus 320 ~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyv-aD~~-------------nIr~i~~-~G~i~ti~G~~-~~~~~~~~ 383 (482)
....+.+.+.......|+.|.+|+||++|+||| +|.. .+.++++ .|.+..++-.. ...+++..
T Consensus 459 -~~~~~~g~~~~~~~~~fnsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGia 537 (592)
T 4a9v_A 459 -AGTPKGGSSNITPQNMFNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGIS 537 (592)
T ss_dssp -TTSGGGCCTTCCTTTCCCCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEE
T ss_pred -ccccccCccCccccCccCCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCE
Confidence 000011212223345799999999999999999 7863 2777887 68888887432 23345667
Q ss_pred CCCCc-eEEeccc
Q psy8782 384 IPCEG-TLNIEEV 395 (482)
Q Consensus 384 ~~~dg-~l~v~~~ 395 (482)
+++|+ .|||.-+
T Consensus 538 fSPD~ktLfV~vQ 550 (592)
T 4a9v_A 538 FSPDQKTLFVGIQ 550 (592)
T ss_dssp ECTTSSEEEEEEE
T ss_pred ECCCCCEEEEEEe
Confidence 77777 6777543
No 129
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.92 E-value=0.0006 Score=72.08 Aligned_cols=190 Identities=14% Similarity=0.090 Sum_probs=112.3
Q ss_pred CCc-EEEEeC--CcEEEEcCC-CeEEEEEeeCCCcccCCCccccccccccCCceEEE-e-cCCCeEEEEcCC--------
Q psy8782 130 DGS-LFVGDF--NLIRRIMTD-GTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQ-K-GDGSNIYLKNKP-------- 195 (482)
Q Consensus 130 ~G~-lyvaD~--~~Irki~~~-G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~-~-~~g~~lyi~d~~-------- 195 (482)
||. |||+|. +||.+|+.+ .++..++..... .+|.|+++ . ++++.+|++...
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g---------------~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg 164 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNA---------------KGIHGLRPQKWPRSNYVFCNGEDETPLVNDG 164 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSC---------------CSEEEEEECCSSBCSEEEEEECSCEESSCSS
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCC---------------CCCcceeeeecCCCcEEEEecccccccCCCC
Confidence 554 999998 799999986 565555543221 25889887 4 789999998421
Q ss_pred ----------CeEEEEcCCCccccCCCcCCCCCCCceeec-CCccEEEEcCCC-CEEEEECCc----------------E
Q psy8782 196 ----------RIIKTTLGDGHQRPLDCKDCNGEAGPKQRL-LAPVALATAPDG-SLFVGDFNL----------------I 247 (482)
Q Consensus 196 ----------~~i~~~~g~G~~~~~~~~~~~g~~~~~~~l-~~P~giavd~~G-~lyv~D~~~----------------I 247 (482)
+.++.+........ ..-.. ..|.+++++++| .+|++..+. |
T Consensus 165 ~~l~~~~~~~~~vtvID~~t~~v~-----------~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v 233 (595)
T 1fwx_A 165 TNMEDVANYVNVFTAVDADKWEVA-----------WQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHI 233 (595)
T ss_dssp SSTTCGGGEEEEEEEEETTTTEEE-----------EEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEE
T ss_pred cccccccccCceEEEEECCCCeEE-----------EEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceE
Confidence 23444433211110 01111 269999999988 678887532 3
Q ss_pred EEEc--------CCCeE-----EEEEeecc--C--------CCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCC
Q psy8782 248 RRIM--------TDGTV-----RTVVRLNV--T--------RVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAP 304 (482)
Q Consensus 248 ~~i~--------~~G~v-----~~~~g~~~--~--------~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~ 304 (482)
..++ ++|+. +.++.... . ....|.|+.++|++..+||++...++|..++........
T Consensus 234 ~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~ 313 (595)
T 1fwx_A 234 VVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVF 313 (595)
T ss_dssp EEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHH
T ss_pred EEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECccccccc
Confidence 3333 23321 11221111 0 124799999999556899999999999999953210000
Q ss_pred CCcE---EEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEECCC--EEEEcC
Q psy8782 305 DYNV---EPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADGTN--IRMVDR 364 (482)
Q Consensus 305 ~g~~---~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~~n--Ir~i~~ 364 (482)
+|.+ ..+.... .-| ..|.+++|+++|++|++-.-. |.+++-
T Consensus 314 ~~~l~~~~~v~~~v---------~vG----------~gP~h~aF~~dG~aY~t~~ldsqV~kwdi 359 (595)
T 1fwx_A 314 YENADPRSAVVAEP---------ELG----------LGPLHTAFDGRGNAYTSLFLDSQVVKWNI 359 (595)
T ss_dssp HSCCCGGGGEEECC---------BCC----------SCEEEEEECTTSEEEEEETTTTEEEEEEH
T ss_pred ccccCcccceEEEc---------CCC----------CCcceEEECCCCeEEEEEecCCcEEEEEh
Confidence 0100 0011110 011 359999999999999987644 777763
No 130
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=97.88 E-value=0.00016 Score=75.78 Aligned_cols=63 Identities=21% Similarity=0.232 Sum_probs=51.5
Q ss_pred eeecCCccEEEEcCCCCEEE-EEC-------------CcEEEEcC-CCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEe
Q psy8782 222 KQRLLAPVALATAPDGSLFV-GDF-------------NLIRRIMT-DGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISD 286 (482)
Q Consensus 222 ~~~l~~P~giavd~~G~lyv-~D~-------------~~I~~i~~-~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD 286 (482)
...|+.|.+|++|++|+||| +|. +.++++++ +|++..++. ......|+|++++|+...|||+-
T Consensus 472 ~~~fnsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~--~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 472 QNMFNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMV--GPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp TTCCCCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEE--CCTTCEEEEEEECTTSSEEEEEE
T ss_pred cCccCCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEe--CCCCccccCCEECCCCCEEEEEE
Confidence 35799999999999999999 775 27899998 688888763 22346799999999667899985
No 131
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.87 E-value=0.00066 Score=66.25 Aligned_cols=172 Identities=12% Similarity=0.108 Sum_probs=101.7
Q ss_pred EEEEcCC-CcEEEEe---C--CcEEEEcCCCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcC-CC
Q psy8782 124 ALATAPD-GSLFVGD---F--NLIRRIMTDGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNK-PR 196 (482)
Q Consensus 124 glavd~~-G~lyvaD---~--~~Irki~~~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~-~~ 196 (482)
+.++.++ +.||++| . ..|.|++.+|.-.+.+-... . ..++.+++.||.++. ..
T Consensus 108 ~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~-------------------~-~~~~~~g~~iy~t~~g~~ 167 (302)
T 3s25_A 108 CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHY-------------------L-FTCNTSDRYFYYNNPKNG 167 (302)
T ss_dssp EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSC-------------------C-CCSEEETTEEEEECTTTC
T ss_pred ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCC-------------------c-eEeeEECCEEEEEeCCCc
Confidence 3344544 4699998 3 68999999875433221110 0 223556777887765 33
Q ss_pred eEEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcC-CCCEEEEEC---CcEEEEcCCCeEEEEEeeccCCCCceee
Q psy8782 197 IIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAP-DGSLFVGDF---NLIRRIMTDGTVRTVVRLNVTRVAYRYH 272 (482)
Q Consensus 197 ~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~-~G~lyv~D~---~~I~~i~~~G~v~~~~g~~~~~~~~p~g 272 (482)
.|..+.-+|... ..-+..+..+++.| .+.||+++. .+|.|++.+|.-.+++.. ..+ |+
T Consensus 168 ~Iy~~~l~g~~~-------------~~l~~~~~~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~--~~~--~~- 229 (302)
T 3s25_A 168 QLYRYDTASQSE-------------ALFYDCNCYKPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTE--ANI--EH- 229 (302)
T ss_dssp CEEEEETTTTEE-------------EEEECSCEEEEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECSC--SCE--EE-
T ss_pred eEEEEECCCCCE-------------EEEeCCCccceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEeC--CCc--ce-
Confidence 444443232211 01112233344555 468999998 379999999976555422 111 33
Q ss_pred EEEeCCCCeEEEE-eCCCCEEEEEecCCccCCCCCcE-EEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCc
Q psy8782 273 IAYSPLDGTLYIS-DPESHQILRVKNAMDFSAPDYNV-EPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNI 350 (482)
Q Consensus 273 iavd~~~g~lyVa-D~~n~~I~~~~~~~~~~~~~g~~-~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~ 350 (482)
++|.++.||.+ +.....|.+++. +|.. +.+.- + ....|++. .+.
T Consensus 230 --~~~~g~~Iy~~~~~~~~~i~~~~~-------DG~~r~~l~~-------------~-----------~~~~i~i~-~d~ 275 (302)
T 3s25_A 230 --YNVYGSLIFYQRGGDNPALCVVKN-------DGTGFKELAK-------------G-----------EFCNINVT-SQY 275 (302)
T ss_dssp --EEEETTEEEEEECSSSCEEEEEET-------TSCCCEEEEE-------------S-----------CEEEEEEC-SSE
T ss_pred --EEECCCEEEEEECCCCcEEEEEEC-------CCCccEEeeC-------------C-----------ccceEEEe-CCE
Confidence 66657799997 666789999994 6642 22221 0 12256663 678
Q ss_pred EEEEECCC--EEEEcCCCc
Q psy8782 351 LYFADGTN--IRMVDRDGI 367 (482)
Q Consensus 351 lyvaD~~n--Ir~i~~~G~ 367 (482)
||++|... |.++..+|.
T Consensus 276 Iy~td~~~~~i~~~~~dGs 294 (302)
T 3s25_A 276 VYFTDFVSNKEYCTSTQNP 294 (302)
T ss_dssp EEEEETTTCCEEEEESSSC
T ss_pred EEEEECCCCeEEEEECCCC
Confidence 99999654 888877764
No 132
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=97.85 E-value=0.00082 Score=66.97 Aligned_cols=61 Identities=8% Similarity=-0.030 Sum_probs=46.5
Q ss_pred EEEEcCC-CCEEEEEC------------CcEEEEcC-CCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEE
Q psy8782 230 ALATAPD-GSLFVGDF------------NLIRRIMT-DGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRV 295 (482)
Q Consensus 230 giavd~~-G~lyv~D~------------~~I~~i~~-~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~ 295 (482)
.++++++ +.+||+.. +.|..+|. ++++...+..+ . |.+|+++|++..||++.. +.|..+
T Consensus 258 ~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~----~-p~~ia~spdg~~l~v~n~--~~v~v~ 330 (361)
T 2oiz_A 258 LVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGR----D-ALSMTIDQQRNLMLTLDG--GNVNVY 330 (361)
T ss_dssp CEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECT----T-CCEEEEETTTTEEEEECS--SCEEEE
T ss_pred EEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecC----C-eeEEEECCCCCEEEEeCC--CeEEEE
Confidence 3899998 58999853 47999985 56666555332 1 999999996668999885 899999
Q ss_pred ec
Q psy8782 296 KN 297 (482)
Q Consensus 296 ~~ 297 (482)
+.
T Consensus 331 D~ 332 (361)
T 2oiz_A 331 DI 332 (361)
T ss_dssp EC
T ss_pred EC
Confidence 85
No 133
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.80 E-value=0.0038 Score=68.81 Aligned_cols=205 Identities=13% Similarity=0.210 Sum_probs=124.2
Q ss_pred CceEEEEcCCCc-EEEEeC-CcEEEEcCC-CeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCCCe
Q psy8782 121 APVALATAPDGS-LFVGDF-NLIRRIMTD-GTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKPRI 197 (482)
Q Consensus 121 ~P~glavd~~G~-lyvaD~-~~Irki~~~-G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~~~ 197 (482)
...+|+.|++|+ |||+-. +.|.+++++ +++..+... .... . ......++.+.++ +||++...+.
T Consensus 407 ~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~-~~~l------~-----~~~v~~i~~d~~g-~lwigt~~Gl 473 (795)
T 4a2l_A 407 NIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQR-NSQL------V-----NENVYAILPDGEG-NLWLGTLSAL 473 (795)
T ss_dssp CEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTT-TSCC------S-----CSCEEEEEECSSS-CEEEEESSCE
T ss_pred cEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecC-CCCc------C-----CCeeEEEEECCCC-CEEEEecCce
Confidence 456889999999 999987 889999875 666654311 0000 0 0112344545443 6777665555
Q ss_pred EEEEcCCCccccCCCcCCCCCCCceeec--CCccEEEEcCCCCEEEEECCcEEEEcCCCeEEEEEee-ccCC--CCceee
Q psy8782 198 IKTTLGDGHQRPLDCKDCNGEAGPKQRL--LAPVALATAPDGSLFVGDFNLIRRIMTDGTVRTVVRL-NVTR--VAYRYH 272 (482)
Q Consensus 198 i~~~~g~G~~~~~~~~~~~g~~~~~~~l--~~P~giavd~~G~lyv~D~~~I~~i~~~G~v~~~~g~-~~~~--~~~p~g 272 (482)
...-..+++....... . ....+ .....|+.|++|.|||+..+.+.+++++.....+... .... -.....
T Consensus 474 ~~~~~~~~~~~~~~~~--~----~~~~~~~~~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~ 547 (795)
T 4a2l_A 474 VRFNPEQRSFTTIEKE--K----DGTPVVSKQITTLFRDSHKRLWIGGEEGLSVFKQEGLDIQKASILPVSNVTKLFTNC 547 (795)
T ss_dssp EEEETTTTEEEECCBC--T----TCCBCCCCCEEEEEECTTCCEEEEESSCEEEEEEETTEEEECCCSCSCGGGGSCEEE
T ss_pred eEEeCCCCeEEEcccc--c----cccccCCceEEEEEECCCCCEEEEeCCceEEEeCCCCeEEEecCCCCCCCCCCeeEE
Confidence 4444444443322100 0 00111 3467899999999999998889999875432232210 1111 234578
Q ss_pred EEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEE
Q psy8782 273 IAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILY 352 (482)
Q Consensus 273 iavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~ly 352 (482)
|+.|+ +|.|||+... -+.+++. .++.++.+.- .+|.+ -+...+|+.|++|+||
T Consensus 548 i~~d~-~g~lWigT~~--Gl~~~d~------~~~~~~~~~~-------------~~gl~-----~~~i~~i~~d~~g~lW 600 (795)
T 4a2l_A 548 IYEAS-NGIIWVGTRE--GFYCFNE------KDKQIKRYNT-------------TNGLP-----NNVVYGILEDSFGRLW 600 (795)
T ss_dssp EEECT-TSCEEEEESS--CEEEEET------TTTEEEEECG-------------GGTCS-----CSCEEEEEECTTSCEE
T ss_pred EEECC-CCCEEEEeCC--CceeECC------CCCcEEEeCC-------------CCCCc-----hhheEEEEECCCCCEE
Confidence 88888 8999998764 6888984 2344443310 12211 1235689999999999
Q ss_pred EEECCCEEEEcCC-CcEEEE
Q psy8782 353 FADGTNIRMVDRD-GIVTTV 371 (482)
Q Consensus 353 vaD~~nIr~i~~~-G~i~ti 371 (482)
++-...|.+++++ +.+..+
T Consensus 601 i~t~~Gl~~~~~~~~~~~~~ 620 (795)
T 4a2l_A 601 LSTNRGISCFNPETEKFRNF 620 (795)
T ss_dssp EEETTEEEEEETTTTEEEEE
T ss_pred EEcCCceEEEcCCCCcEEEc
Confidence 9987669999985 445544
No 134
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=97.78 E-value=0.026 Score=54.68 Aligned_cols=188 Identities=13% Similarity=0.132 Sum_probs=109.3
Q ss_pred ceEEEEcCCCcEEEEeC--CcEEEEcC-CCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCCCeE
Q psy8782 122 PVALATAPDGSLFVGDF--NLIRRIMT-DGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKPRII 198 (482)
Q Consensus 122 P~glavd~~G~lyvaD~--~~Irki~~-~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~~~i 198 (482)
-..+++.+++.+.++-. ..|+..+. +|+......... .....+.+.+++..+......+.+
T Consensus 83 v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~----------------~~~~~~~~spdg~~l~~g~~dg~v 146 (321)
T 3ow8_A 83 VVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGP----------------VDAWTLAFSPDSQYLATGTHVGKV 146 (321)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCT----------------TCCCCEEECTTSSEEEEECTTSEE
T ss_pred EEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCC----------------ccEEEEEECCCCCEEEEEcCCCcE
Confidence 45677778887666554 67777775 455443332211 112345666666666666556666
Q ss_pred EEEcCC-CccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC--CcEEEEcC-CCeEEEEEeeccCCCCceeeEE
Q psy8782 199 KTTLGD-GHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF--NLIRRIMT-DGTVRTVVRLNVTRVAYRYHIA 274 (482)
Q Consensus 199 ~~~~g~-G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~--~~I~~i~~-~G~v~~~~g~~~~~~~~p~gia 274 (482)
..+.-. +..... ....-.....+++.|+|.++++-. +.|+.++. +++....+.. .-.....++
T Consensus 147 ~i~~~~~~~~~~~----------~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~---h~~~v~~l~ 213 (321)
T 3ow8_A 147 NIFGVESGKKEYS----------LDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEG---HAMPIRSLT 213 (321)
T ss_dssp EEEETTTCSEEEE----------EECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC---CSSCCCEEE
T ss_pred EEEEcCCCceeEE----------ecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcc---cCCceeEEE
Confidence 555321 211100 001112356889999998666554 78999884 5666554422 122357899
Q ss_pred EeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEE-EEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEE
Q psy8782 275 YSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVE-PAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYF 353 (482)
Q Consensus 275 vd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~-~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyv 353 (482)
++| ++.++++-...+.|+.++. ..+... .+.|. -.....+++.++|.+++
T Consensus 214 ~sp-d~~~l~s~s~dg~i~iwd~------~~~~~~~~~~~h----------------------~~~v~~~~~sp~~~~l~ 264 (321)
T 3ow8_A 214 FSP-DSQLLVTASDDGYIKIYDV------QHANLAGTLSGH----------------------ASWVLNVAFCPDDTHFV 264 (321)
T ss_dssp ECT-TSCEEEEECTTSCEEEEET------TTCCEEEEECCC----------------------SSCEEEEEECTTSSEEE
T ss_pred EcC-CCCEEEEEcCCCeEEEEEC------CCcceeEEEcCC----------------------CCceEEEEECCCCCEEE
Confidence 999 7777777777888998885 233322 22210 12356789999988666
Q ss_pred EEC-CC-EEEEcC-CCc
Q psy8782 354 ADG-TN-IRMVDR-DGI 367 (482)
Q Consensus 354 aD~-~n-Ir~i~~-~G~ 367 (482)
+-+ .. |++.+. ++.
T Consensus 265 s~s~D~~v~iwd~~~~~ 281 (321)
T 3ow8_A 265 SSSSDKSVKVWDVGTRT 281 (321)
T ss_dssp EEETTSCEEEEETTTTE
T ss_pred EEeCCCcEEEEeCCCCE
Confidence 544 33 888875 344
No 135
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=97.78 E-value=0.0023 Score=65.53 Aligned_cols=198 Identities=13% Similarity=0.042 Sum_probs=109.2
Q ss_pred CCCceEEEEcCCCcEEEEeC--------CcEEEEcCC-CeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeE
Q psy8782 119 LLAPVALATAPDGSLFVGDF--------NLIRRIMTD-GTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNI 189 (482)
Q Consensus 119 l~~P~glavd~~G~lyvaD~--------~~Irki~~~-G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~l 189 (482)
+..|+.+.+.|+| |||+.. +.|..+|.. +++..-+..+... ..-+.++.+.++++.+
T Consensus 137 ~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~-------------~~~~Yd~~~~p~~~~m 202 (462)
T 2ece_A 137 YSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGD-------------QYLAYDFWWNLPNEVL 202 (462)
T ss_dssp EEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTT-------------CCCCCCEEEETTTTEE
T ss_pred CCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCC-------------ccccceEEECCCCCEE
Confidence 4579999999999 999765 479999975 7766544322100 0012345556666555
Q ss_pred EEEc-------------------CCCeEEEEcC-CCccccCCCcCCCCCCCceeec----CCccEEEE--cCCC-CEEEE
Q psy8782 190 YLKN-------------------KPRIIKTTLG-DGHQRPLDCKDCNGEAGPKQRL----LAPVALAT--APDG-SLFVG 242 (482)
Q Consensus 190 yi~d-------------------~~~~i~~~~g-~G~~~~~~~~~~~g~~~~~~~l----~~P~giav--d~~G-~lyv~ 242 (482)
|+++ ....+.++.- +++.. ..-.+ ..|..|.+ +|+| .+||+
T Consensus 203 vsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~------------~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~ 270 (462)
T 2ece_A 203 VSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRI------------HSLTLGEENRMALELRPLHDPTKLMGFIN 270 (462)
T ss_dssp EECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEE------------EEEESCTTEEEEEEEEECSSTTCCEEEEE
T ss_pred EEccCcCccccccccchhhhhhccCCEEEEEECCCCcEe------------eEEecCCCCCccceeEeeECCCCCEEEEE
Confidence 5553 1233333321 22111 01111 24777766 8888 57776
Q ss_pred EC-------CcEEEEcC-CCeEEE--EEeeccC----C-----------CCceeeEEEeCCCCeEEEEeCCCCEEEEEec
Q psy8782 243 DF-------NLIRRIMT-DGTVRT--VVRLNVT----R-----------VAYRYHIAYSPLDGTLYISDPESHQILRVKN 297 (482)
Q Consensus 243 D~-------~~I~~i~~-~G~v~~--~~g~~~~----~-----------~~~p~giavd~~~g~lyVaD~~n~~I~~~~~ 297 (482)
.. +.|..+.. +|+... ++..... . ...|.+|.+++++..|||++.+.+.|..++.
T Consensus 271 ~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV 350 (462)
T 2ece_A 271 MVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDI 350 (462)
T ss_dssp EEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEEC
T ss_pred EeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEe
Confidence 53 45655442 243221 1111110 0 2568999999966799999999999999985
Q ss_pred CCccCCCCCcEEEEe--cCC-cccCCCCCCccCCCccccccccCCcceEEEeCCCc-EEEEE
Q psy8782 298 AMDFSAPDYNVEPAV--GSG-ERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNI-LYFAD 355 (482)
Q Consensus 298 ~~~~~~~~g~~~~va--G~g-~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~-lyvaD 355 (482)
.. .++.+.+. -.| ..+.+. .. +| ...-..|++++++++|. |||+.
T Consensus 351 ~d-----~~~~~lv~~I~tGG~~~~~~---~~-~G----~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 351 SN-----PFKPVLTGKVKLGGIFHRAD---HP-AG----HKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp SS-----TTSCEEEEEEECBTTTTCBC---CT-TS----CCCCSCCCCEEECTTSSEEEEEC
T ss_pred cC-----CCCcEEEEEEEeCCeecccc---cc-cc----ccCCCCCCEEEEcCCCCEEEEEc
Confidence 31 22222221 111 000000 00 11 00124699999999985 99998
No 136
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=97.76 E-value=0.0091 Score=63.38 Aligned_cols=159 Identities=9% Similarity=0.003 Sum_probs=96.1
Q ss_pred CceEEEEcCCCc-EEEEeC-CcEEEEcC---CCeEEEEEeeCCCcccCCCccccccccccCCceEEEe----cCCCeEEE
Q psy8782 121 APVALATAPDGS-LFVGDF-NLIRRIMT---DGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQK----GDGSNIYL 191 (482)
Q Consensus 121 ~P~glavd~~G~-lyvaD~-~~Irki~~---~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~----~~g~~lyi 191 (482)
.|++++++|||. ||++.. +.|.+|+. ++++..-+..+ ..|.+++++ ++|..+|+
T Consensus 198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-----------------~~P~~ia~s~~~~pDGk~l~v 260 (567)
T 1qks_A 198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-----------------SEARSIETSKMEGWEDKYAIA 260 (567)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-----------------SEEEEEEECCSTTCTTTEEEE
T ss_pred CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-----------------CCCceeEEccccCCCCCEEEE
Confidence 588999999997 799887 79999987 45544322221 248899998 58888998
Q ss_pred EcC-CCeEEEEc-CCCccc---cCCCcCCC-----------------------------CCC----------Ccee---e
Q psy8782 192 KNK-PRIIKTTL-GDGHQR---PLDCKDCN-----------------------------GEA----------GPKQ---R 224 (482)
Q Consensus 192 ~d~-~~~i~~~~-g~G~~~---~~~~~~~~-----------------------------g~~----------~~~~---~ 224 (482)
++. .+.+.++. .+.+.. +......+ +.. .... .
T Consensus 261 ~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~ 340 (567)
T 1qks_A 261 GAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISA 340 (567)
T ss_dssp EEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEEC
T ss_pred EEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeec
Confidence 763 23333321 111110 00000000 000 0000 1
Q ss_pred cCCccEEEEcCCCC-EEEEEC--CcEEEEc-CCCeEEEEEeeccCCCCce-eeEE-EeCCCCeEEEEe-CCCCEEEEEec
Q psy8782 225 LLAPVALATAPDGS-LFVGDF--NLIRRIM-TDGTVRTVVRLNVTRVAYR-YHIA-YSPLDGTLYISD-PESHQILRVKN 297 (482)
Q Consensus 225 l~~P~giavd~~G~-lyv~D~--~~I~~i~-~~G~v~~~~g~~~~~~~~p-~gia-vd~~~g~lyVaD-~~n~~I~~~~~ 297 (482)
=..|.++.++++|. +|+++. +.|..+| .++++...+..+ ....+| .|+. ++|..+.+|++- .+.+.|..|+.
T Consensus 341 ~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vg-g~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~ 419 (567)
T 1qks_A 341 ERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTG-GQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGT 419 (567)
T ss_dssp CSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECS-SSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEEC
T ss_pred cccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEecc-CcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecC
Confidence 12577899999995 677776 8999998 457776665431 233344 3655 577457888865 46688999985
No 137
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=97.76 E-value=0.036 Score=54.58 Aligned_cols=202 Identities=12% Similarity=0.060 Sum_probs=107.4
Q ss_pred CceEEEEcCCCcEEEEe-C-CcEEEEcCCCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCCCeE
Q psy8782 121 APVALATAPDGSLFVGD-F-NLIRRIMTDGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKPRII 198 (482)
Q Consensus 121 ~P~glavd~~G~lyvaD-~-~~Irki~~~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~~~i 198 (482)
....+++.++|.++++- . +.|+.++.++.......... .....+.+.+++..++.+..++.+
T Consensus 110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~----------------~~v~~~~~~~~~~~l~~~~~d~~i 173 (425)
T 1r5m_A 110 QVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHR----------------APIVSVKWNKDGTHIISMDVENVT 173 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCC----------------SCEEEEEECTTSSEEEEEETTCCE
T ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeeccCCC----------------ccEEEEEECCCCCEEEEEecCCeE
Confidence 57889999999865554 4 67888887776554432111 112455666666666666655555
Q ss_pred EEEcC-CCcccc-CCCcCCCCC----CCceeecCCccEEEEcCCCCEEEEEC-CcEEEEcCC-CeEEEEEeeccCCCCce
Q psy8782 199 KTTLG-DGHQRP-LDCKDCNGE----AGPKQRLLAPVALATAPDGSLFVGDF-NLIRRIMTD-GTVRTVVRLNVTRVAYR 270 (482)
Q Consensus 199 ~~~~g-~G~~~~-~~~~~~~g~----~~~~~~l~~P~giavd~~G~lyv~D~-~~I~~i~~~-G~v~~~~g~~~~~~~~p 270 (482)
..+.- ++.... ......... ......-.....+++.+++.++++.. +.|+.++.. ++....+. ......
T Consensus 174 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~---~~~~~i 250 (425)
T 1r5m_A 174 ILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLI---GHHGPI 250 (425)
T ss_dssp EEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEEC---CCSSCE
T ss_pred EEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeec---cCCCce
Confidence 54432 222110 000000000 00000001155677777777666666 788888744 33332221 122345
Q ss_pred eeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCc-EEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCC
Q psy8782 271 YHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYN-VEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADN 349 (482)
Q Consensus 271 ~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~-~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G 349 (482)
..++++| ++.++++-...+.|+.++.. ++. +..+.+ .-.....+++.+++
T Consensus 251 ~~~~~~~-~~~~l~~~~~d~~i~i~d~~------~~~~~~~~~~----------------------~~~~i~~~~~~~~~ 301 (425)
T 1r5m_A 251 SVLEFND-TNKLLLSASDDGTLRIWHGG------NGNSQNCFYG----------------------HSQSIVSASWVGDD 301 (425)
T ss_dssp EEEEEET-TTTEEEEEETTSCEEEECSS------SBSCSEEECC----------------------CSSCEEEEEEETTT
T ss_pred EEEEECC-CCCEEEEEcCCCEEEEEECC------CCccceEecC----------------------CCccEEEEEECCCC
Confidence 7899999 66666665667888888742 222 111111 11235678899888
Q ss_pred cEEEEECCC-EEEEcC-CCcEEE
Q psy8782 350 ILYFADGTN-IRMVDR-DGIVTT 370 (482)
Q Consensus 350 ~lyvaD~~n-Ir~i~~-~G~i~t 370 (482)
.|+.+.... |++.+. ++....
T Consensus 302 ~l~~~~~d~~i~i~d~~~~~~~~ 324 (425)
T 1r5m_A 302 KVISCSMDGSVRLWSLKQNTLLA 324 (425)
T ss_dssp EEEEEETTSEEEEEETTTTEEEE
T ss_pred EEEEEeCCCcEEEEECCCCcEeE
Confidence 444455444 888875 455433
No 138
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=97.67 E-value=0.041 Score=52.30 Aligned_cols=196 Identities=10% Similarity=-0.057 Sum_probs=108.8
Q ss_pred CceEEEEcCCCcEEEEeC-CcEEEEcCC-Ce----EEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcC
Q psy8782 121 APVALATAPDGSLFVGDF-NLIRRIMTD-GT----VRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNK 194 (482)
Q Consensus 121 ~P~glavd~~G~lyvaD~-~~Irki~~~-G~----v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~ 194 (482)
....+++.++|.++++-. +.|+.++.+ +. +.++...+. ......+.+.+++..++....
T Consensus 53 ~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~l~~~~~ 117 (337)
T 1gxr_A 53 VVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNR---------------DNYIRSCKLLPDGCTLIVGGE 117 (337)
T ss_dssp CCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCT---------------TSBEEEEEECTTSSEEEEEES
T ss_pred ceEEEEEecCCcEEEEcCCCeEEEEECCCCCceeeeecccccCC---------------CCcEEEEEEcCCCCEEEEEcC
Confidence 456788889988776665 667766643 11 111110000 011245666677666666666
Q ss_pred CCeEEEEcCC-CccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEE-EC-CcEEEEcC-CCeEEEEEeeccCCCCce
Q psy8782 195 PRIIKTTLGD-GHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVG-DF-NLIRRIMT-DGTVRTVVRLNVTRVAYR 270 (482)
Q Consensus 195 ~~~i~~~~g~-G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~-D~-~~I~~i~~-~G~v~~~~g~~~~~~~~p 270 (482)
++.+..+.-. ++..... .....-.....+++.+++.++++ .. +.|+.++. +++....+. ..-...
T Consensus 118 d~~i~~~d~~~~~~~~~~--------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~---~~~~~i 186 (337)
T 1gxr_A 118 ASTLSIWDLAAPTPRIKA--------ELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ---GHTDGA 186 (337)
T ss_dssp SSEEEEEECCCC--EEEE--------EEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC---CCSSCE
T ss_pred CCcEEEEECCCCCcceee--------ecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeee---cccCce
Confidence 6666655322 2110000 00111223568899998865554 44 78999985 455554442 223457
Q ss_pred eeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCc
Q psy8782 271 YHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNI 350 (482)
Q Consensus 271 ~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~ 350 (482)
..++++| ++.++++-...+.|+.++. .++........ -..+..+++.+++.
T Consensus 187 ~~~~~~~-~~~~l~~~~~dg~i~~~d~------~~~~~~~~~~~----------------------~~~v~~~~~s~~~~ 237 (337)
T 1gxr_A 187 SCIDISN-DGTKLWTGGLDNTVRSWDL------REGRQLQQHDF----------------------TSQIFSLGYCPTGE 237 (337)
T ss_dssp EEEEECT-TSSEEEEEETTSEEEEEET------TTTEEEEEEEC----------------------SSCEEEEEECTTSS
T ss_pred EEEEECC-CCCEEEEEecCCcEEEEEC------CCCceEeeecC----------------------CCceEEEEECCCCC
Confidence 8899999 6666666556788999985 23332222110 12356788988887
Q ss_pred EEEEE-CCC-EEEEcCC-CcEEEE
Q psy8782 351 LYFAD-GTN-IRMVDRD-GIVTTV 371 (482)
Q Consensus 351 lyvaD-~~n-Ir~i~~~-G~i~ti 371 (482)
++++- ..+ |+.++.. +....+
T Consensus 238 ~l~~~~~~~~i~~~~~~~~~~~~~ 261 (337)
T 1gxr_A 238 WLAVGMESSNVEVLHVNKPDKYQL 261 (337)
T ss_dssp EEEEEETTSCEEEEETTSSCEEEE
T ss_pred EEEEEcCCCcEEEEECCCCCeEEE
Confidence 55544 333 8888753 444433
No 139
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=97.50 E-value=0.079 Score=53.04 Aligned_cols=250 Identities=10% Similarity=0.073 Sum_probs=137.5
Q ss_pred cCCceEEEecCCCeEEEEcC------CCeEEEEc-C--------CCcc-ccCCCcCCCCCCCceeecCCccEEEEcCCCC
Q psy8782 175 LSPSGILQKGDGSNIYLKNK------PRIIKTTL-G--------DGHQ-RPLDCKDCNGEAGPKQRLLAPVALATAPDGS 238 (482)
Q Consensus 175 ~~P~gi~~~~~g~~lyi~d~------~~~i~~~~-g--------~G~~-~~~~~~~~~g~~~~~~~l~~P~giavd~~G~ 238 (482)
.-|.|+.+++..+++|++-. .-.+..+. . ++.. .++.. + .....|.+..++.+|+.|.
T Consensus 26 ~~P~gv~vd~~~gRiFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~p~ll~PYP~-----w-~~~~~lvsV~~v~iD~~~r 99 (381)
T 3q6k_A 26 MISTAFAYDAEGEKLFLAVPRKLPRVPYTLAEVDTKNSLGVKGKHSPLLNKFSG-----H-KTGKELTSIYQPVIDDCRR 99 (381)
T ss_dssp CCCCEEEEETTTTEEEEECCTTSTTCSCSEEEEEHHHHTTCTTCSSCCBEECTT-----C-SSSCSSSCEEEEEECTTCE
T ss_pred cceeeeeeecCCCcEEEEeCCCCCCCCcEEEEEeCCCCcccccCCcccccCCCC-----C-ccccceEEeeEEEEcCCCc
Confidence 35889999644568999742 22233332 1 2233 33321 1 1235688999999999999
Q ss_pred EEEEECC-----------------cEEEEc-CCC--eEEEEEeeccC---CCCceeeEEEe---CC----CCeEEEEeCC
Q psy8782 239 LFVGDFN-----------------LIRRIM-TDG--TVRTVVRLNVT---RVAYRYHIAYS---PL----DGTLYISDPE 288 (482)
Q Consensus 239 lyv~D~~-----------------~I~~i~-~~G--~v~~~~g~~~~---~~~~p~giavd---~~----~g~lyVaD~~ 288 (482)
|||.|.+ +|..|| .++ ++......... .-.+-..|+|| +. ++.+||+|..
T Consensus 100 LWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~ 179 (381)
T 3q6k_A 100 LWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFL 179 (381)
T ss_dssp EEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETT
T ss_pred EEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCC
Confidence 9999983 245666 344 66666554321 12356789999 21 4689999999
Q ss_pred CCEEEEEecCCccCCCCCcEEEEecCCcccCCCC-CCccCCCccccccccCCcceEEEeCC-----CcEEEEECCC--EE
Q psy8782 289 SHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGD-EAHCGDGAPARDAKLAYPKGVAVSAD-----NILYFADGTN--IR 360 (482)
Q Consensus 289 n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~-~~~~gdg~~a~~a~l~~P~giavd~~-----G~lyvaD~~n--Ir 360 (482)
...|..++. .+|..-.+...... |-. ..+.-+|..- .....-.|||++++ ..||+.-... ..
T Consensus 180 ~~gLIVydl------~~~~swRv~~~~~~--pd~~~~~~i~G~~~--~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly 249 (381)
T 3q6k_A 180 RGALFIYDH------KKQDSWNVTHPTFK--AERPTKFDYGGKEY--EFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVY 249 (381)
T ss_dssp TTEEEEEET------TTTEEEEEECGGGS--CCSCEEEEETTEEE--EECCCEEEEEECCCCTTSCCEEEEEESSCSEEE
T ss_pred CCcEEEEEC------CCCcEEEEccCCCc--cccCcceEECCEEe--EeccCceEEEecCCcCCCCeEEEEEECCCCcEE
Confidence 999999997 34553344321110 100 0001112100 01135678999986 4699988655 55
Q ss_pred EEc------C--CCcEEEEEcCCCCCCC--CCcCC-CCceEEeccccc-eeEEeecCcceEEecccCCCceEEEeeceee
Q psy8782 361 MVD------R--DGIVTTVIGNHMHKSH--WKPIP-CEGTLNIEEVSE-TMRDIRHTTGWACYGTGDNDHMTLIHCYGVM 428 (482)
Q Consensus 361 ~i~------~--~G~i~ti~G~~~~~~~--~~~~~-~dg~l~v~~~~~-~~~~l~~p~giav~~~g~n~~~~~~~~~g~~ 428 (482)
.+. + ...+.. .|....... ...++ .+|.||+.+... .|...+ |.+-.+. ...+.++
T Consensus 250 ~V~T~~L~~~~~~~~v~~-~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~-~~~~~~~----~~n~~~l------ 317 (381)
T 3q6k_A 250 SVNTKELKQKGGKLNPEL-LGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWN-TQKMPLR----MKNTDVV------ 317 (381)
T ss_dssp EEEHHHHSSTTCCCCCEE-EEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEE-TTSCSBC----GGGEEEE------
T ss_pred EEEHHHhhCcchhhceEE-eeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEe-CCCCccc----cCceEEE------
Confidence 553 1 233443 343321111 23443 678888877643 333332 2110000 0111211
Q ss_pred eeeeeeeecccceeeeeeEEcCCCcEEEEe
Q psy8782 429 QDVVTSVFNNSHFLDVHFSHQDQDLFYFVK 458 (482)
Q Consensus 429 ~~~~~~~~n~~~~~~~~i~~~~~g~~yi~d 458 (482)
.-+..+-++.+++++.+|.||+..
T Consensus 318 ------~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 318 ------YTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp ------EECTTCCSEEEEEECTTSCEEEEE
T ss_pred ------EECCCccccCeEEECCCCeEEEEE
Confidence 112356678889999999999865
No 140
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=97.42 E-value=0.057 Score=51.30 Aligned_cols=182 Identities=13% Similarity=0.085 Sum_probs=106.5
Q ss_pred CceEEEEcCCCcEEE-EeC-CcEEEEcCC-CeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCCCe
Q psy8782 121 APVALATAPDGSLFV-GDF-NLIRRIMTD-GTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKPRI 197 (482)
Q Consensus 121 ~P~glavd~~G~lyv-aD~-~~Irki~~~-G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~~~ 197 (482)
....+++.+++.+++ +.. +.|+.++.. ++......... .....+.+.+++..++....++.
T Consensus 143 ~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~----------------~~i~~~~~~~~~~~l~~~~~dg~ 206 (337)
T 1gxr_A 143 ACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT----------------DGASCIDISNDGTKLWTGGLDNT 206 (337)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS----------------SCEEEEEECTTSSEEEEEETTSE
T ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeeccc----------------CceEEEEECCCCCEEEEEecCCc
Confidence 457888999887554 444 788888754 55443332110 12355666677766766666666
Q ss_pred EEEEcC-CCccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC--CcEEEEcCCC-eEEEEEeeccCCCCceeeE
Q psy8782 198 IKTTLG-DGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF--NLIRRIMTDG-TVRTVVRLNVTRVAYRYHI 273 (482)
Q Consensus 198 i~~~~g-~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~--~~I~~i~~~G-~v~~~~g~~~~~~~~p~gi 273 (482)
+..+.- +++... ....-..+..+++.|+|.++++-. +.|+.++... +...+ .........+
T Consensus 207 i~~~d~~~~~~~~-----------~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~----~~~~~~v~~~ 271 (337)
T 1gxr_A 207 VRSWDLREGRQLQ-----------QHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL----HLHESCVLSL 271 (337)
T ss_dssp EEEEETTTTEEEE-----------EEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEE----CCCSSCEEEE
T ss_pred EEEEECCCCceEe-----------eecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEE----cCCccceeEE
Confidence 666542 222210 001112457889999987655544 7888888554 43332 2223457889
Q ss_pred EEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEE
Q psy8782 274 AYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYF 353 (482)
Q Consensus 274 avd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyv 353 (482)
+++| ++.++++-...+.|+.++. .++........ -..+..+++.+++.+++
T Consensus 272 ~~~~-~~~~l~~~~~dg~i~~~~~------~~~~~~~~~~~----------------------~~~v~~~~~s~~~~~l~ 322 (337)
T 1gxr_A 272 KFAY-CGKWFVSTGKDNLLNAWRT------PYGASIFQSKE----------------------SSSVLSCDISVDDKYIV 322 (337)
T ss_dssp EECT-TSSEEEEEETTSEEEEEET------TTCCEEEEEEC----------------------SSCEEEEEECTTSCEEE
T ss_pred EECC-CCCEEEEecCCCcEEEEEC------CCCeEEEEecC----------------------CCcEEEEEECCCCCEEE
Confidence 9999 7776666667889999985 34443322110 12456789998887555
Q ss_pred E-ECCC-EEEE
Q psy8782 354 A-DGTN-IRMV 362 (482)
Q Consensus 354 a-D~~n-Ir~i 362 (482)
+ ...+ |++.
T Consensus 323 ~~~~dg~i~iw 333 (337)
T 1gxr_A 323 TGSGDKKATVY 333 (337)
T ss_dssp EEETTSCEEEE
T ss_pred EecCCCeEEEE
Confidence 4 4333 5544
No 141
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=97.42 E-value=0.0091 Score=55.08 Aligned_cols=64 Identities=19% Similarity=0.198 Sum_probs=45.1
Q ss_pred cEEEEcCCCCEEEEECCcEEEEcC--CCeE-----EEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEec
Q psy8782 229 VALATAPDGSLFVGDFNLIRRIMT--DGTV-----RTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKN 297 (482)
Q Consensus 229 ~giavd~~G~lyv~D~~~I~~i~~--~G~v-----~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~ 297 (482)
..+.+|++|.||++...+|+|+++ ++.- .+.+|. .....-.-|+++| +|.||.+. .++++|-..
T Consensus 91 ~a~~fD~~G~LYav~dG~iyr~~pP~~~~~~Wl~~a~~vg~--~gw~~~~~lff~p-~G~Lyav~--dg~lyr~~~ 161 (236)
T 1tl2_A 91 QFLFFDPNGYLYAVSKDKLYKASPPQSDTDNWIARATEVGS--GGWSGFKFLFFHP-NGYLYAVH--GQQFYKALP 161 (236)
T ss_dssp SEEEECTTSCEEEEETTEEEEESCCCSTTCCHHHHSEEEEC--SSGGGEEEEEECT-TSCEEEEE--TTEEEEECC
T ss_pred eEEEECCCCCEEEeCCCEEEEeCCCcCCCCceeccccEecc--CCCCceEEEEECC-CceEEEEe--CCcEEecCC
Confidence 368899999999995589999986 3321 123332 1222336799999 99999999 667877654
No 142
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=97.41 E-value=0.00054 Score=63.23 Aligned_cols=154 Identities=14% Similarity=0.098 Sum_probs=88.6
Q ss_pred cCCccEEEEcCCCCEEEEECCcEEEEcC-C-------CeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEe
Q psy8782 225 LLAPVALATAPDGSLFVGDFNLIRRIMT-D-------GTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVK 296 (482)
Q Consensus 225 l~~P~giavd~~G~lyv~D~~~I~~i~~-~-------G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~ 296 (482)
+.....|+++|+|.||......++++++ + +. .+.+|.. ....=..+.+|+ +|.||++ .+++|+|++
T Consensus 40 w~~~~~laf~P~G~LYaV~~G~Ly~~~~~t~~~~~W~~s-~t~IG~~--Gw~~F~a~~fD~-~G~LYav--~dG~iyr~~ 113 (236)
T 1tl2_A 40 WSNFKFLFLSPGGELYGVLNDKIYKGTPPTHDNDNWMGR-AKKIGNG--GWNQFQFLFFDP-NGYLYAV--SKDKLYKAS 113 (236)
T ss_dssp CTTCSEEEECTTSCEEEEETTEEEEESCCCSTTCCHHHH-CEEEECS--CGGGCSEEEECT-TSCEEEE--ETTEEEEES
T ss_pred cccceeEEECCCccEEEEeCCeEEEECCCCCCccccccc-ccEeccc--ccccceEEEECC-CCCEEEe--CCCEEEEeC
Confidence 5567799999999999996689999997 4 33 4555542 111234689999 9999999 349999998
Q ss_pred cCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEECCCEEEE-cCCCc------EE
Q psy8782 297 NAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADGTNIRMV-DRDGI------VT 369 (482)
Q Consensus 297 ~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~~nIr~i-~~~G~------i~ 369 (482)
... ++.- ..++.+.. -|++ -...-.-|+++++|.||-+..+++.+- .|.+. -.
T Consensus 114 pP~-----~~~~-~Wl~~a~~--------vg~~------gw~~~~~lff~p~G~Lyav~dg~lyr~~~P~~~~~~wl~~~ 173 (236)
T 1tl2_A 114 PPQ-----SDTD-NWIARATE--------VGSG------GWSGFKFLFFHPNGYLYAVHGQQFYKALPPVSNQDNWLARA 173 (236)
T ss_dssp CCC-----STTC-CHHHHSEE--------EECS------SGGGEEEEEECTTSCEEEEETTEEEEECCCSSTTCCHHHHC
T ss_pred CCc-----CCCC-ceeccccE--------eccC------CCCceEEEEECCCceEEEEeCCcEEecCCCCCCCccccccc
Confidence 521 1111 11111110 0111 012237899999999998884445443 34222 23
Q ss_pred EEEcCCCCCC-CCCcCCCCceEEeccccceeEEeecC
Q psy8782 370 TVIGNHMHKS-HWKPIPCEGTLNIEEVSETMRDIRHT 405 (482)
Q Consensus 370 ti~G~~~~~~-~~~~~~~dg~l~v~~~~~~~~~l~~p 405 (482)
+.+|...... ....++.+|.|+..+ .-++.+..-|
T Consensus 174 ~~~g~~g~~~yr~l~f~~~G~l~~v~-~g~~Y~~~~p 209 (236)
T 1tl2_A 174 TKIGQGGWDTFKFLFFSSVGTLFGVQ-GGKFYEDYPP 209 (236)
T ss_dssp EEEESSSGGGEEEEEECTTSCEEEEE-TTEEEEESCC
T ss_pred ceeccCCcceEEEEEECCCCcEEEEe-CCeEEecCCc
Confidence 4444332211 112245566666544 3345544444
No 143
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=97.30 E-value=0.27 Score=52.68 Aligned_cols=35 Identities=9% Similarity=-0.072 Sum_probs=25.7
Q ss_pred CCceEEEEcCCCcEEEEeCCcEEEEcCC-CeEEEEE
Q psy8782 120 LAPVALATAPDGSLFVGDFNLIRRIMTD-GTVRTVV 154 (482)
Q Consensus 120 ~~P~glavd~~G~lyvaD~~~Irki~~~-G~v~ti~ 154 (482)
..+..+++.||+.|.++....|+.++.+ |+...+.
T Consensus 82 ~~v~~~~~spd~~~~~~~~~~i~~~d~~~~~~~~l~ 117 (706)
T 2z3z_A 82 FPSFRTLDAGRGLVVLFTQGGLVGFDMLARKVTYLF 117 (706)
T ss_dssp CCCEEEEETTTTEEEEEETTEEEEEETTTTEEEEEE
T ss_pred cCceeEEECCCCeEEEEECCEEEEEECCCCceEEcc
Confidence 4688999999976777655888888865 5555544
No 144
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=97.29 E-value=0.088 Score=50.86 Aligned_cols=183 Identities=15% Similarity=0.153 Sum_probs=106.1
Q ss_pred ceEEEEcCCCcEEEEeC--CcEEEEcCC-CeEE-EEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCCCe
Q psy8782 122 PVALATAPDGSLFVGDF--NLIRRIMTD-GTVR-TVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKPRI 197 (482)
Q Consensus 122 P~glavd~~G~lyvaD~--~~Irki~~~-G~v~-ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~~~ 197 (482)
...+++.|+|..+++-. +.|+.++.+ +... ++...+ .....+.+.+++..+.....++.
T Consensus 125 ~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~-----------------~~v~~~~~spdg~~lasg~~dg~ 187 (321)
T 3ow8_A 125 AWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRG-----------------KFILSIAYSPDGKYLASGAIDGI 187 (321)
T ss_dssp CCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSS-----------------SCEEEEEECTTSSEEEEEETTSC
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCC-----------------ceEEEEEECCCCCEEEEEcCCCe
Confidence 34688889998777665 677777643 3332 222111 01245566666666666666666
Q ss_pred EEEEc-CCCccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC--CcEEEEcC-CCeEEEEEeeccCCCCceeeE
Q psy8782 198 IKTTL-GDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF--NLIRRIMT-DGTVRTVVRLNVTRVAYRYHI 273 (482)
Q Consensus 198 i~~~~-g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~--~~I~~i~~-~G~v~~~~g~~~~~~~~p~gi 273 (482)
+..+. .+++.... ....-.....+++.|+|.++++-. +.|+.++. .++....+. ........+
T Consensus 188 i~iwd~~~~~~~~~----------~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~h~~~v~~~ 254 (321)
T 3ow8_A 188 INIFDIATGKLLHT----------LEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS---GHASWVLNV 254 (321)
T ss_dssp EEEEETTTTEEEEE----------ECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEEC---CCSSCEEEE
T ss_pred EEEEECCCCcEEEE----------EcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEc---CCCCceEEE
Confidence 65553 22322100 001112346899999998777766 68888884 455444332 223346789
Q ss_pred EEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcE-EEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEE
Q psy8782 274 AYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNV-EPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILY 352 (482)
Q Consensus 274 avd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~-~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~ly 352 (482)
+++| ++.+.++-...+.|+.++. .++.. ..+.+. -....++++.++|..+
T Consensus 255 ~~sp-~~~~l~s~s~D~~v~iwd~------~~~~~~~~~~~h----------------------~~~v~~v~~s~~g~~l 305 (321)
T 3ow8_A 255 AFCP-DDTHFVSSSSDKSVKVWDV------GTRTCVHTFFDH----------------------QDQVWGVKYNGNGSKI 305 (321)
T ss_dssp EECT-TSSEEEEEETTSCEEEEET------TTTEEEEEECCC----------------------SSCEEEEEECTTSSEE
T ss_pred EECC-CCCEEEEEeCCCcEEEEeC------CCCEEEEEEcCC----------------------CCcEEEEEECCCCCEE
Confidence 9999 7777777677788988885 23332 222211 1235689999988766
Q ss_pred EEECC-C-EEEEc
Q psy8782 353 FADGT-N-IRMVD 363 (482)
Q Consensus 353 vaD~~-n-Ir~i~ 363 (482)
++-+. . |++.|
T Consensus 306 ~s~~~d~~i~vwd 318 (321)
T 3ow8_A 306 VSVGDDQEIHIYD 318 (321)
T ss_dssp EEEETTCCEEEEE
T ss_pred EEEeCCCeEEEEe
Confidence 65432 2 66655
No 145
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.27 E-value=0.0043 Score=61.39 Aligned_cols=69 Identities=16% Similarity=0.135 Sum_probs=52.1
Q ss_pred CccEEEEcC-CCCEEEEEC-CcEEEEc--CC----CeEEEEEeeccCCCC-ceeeEEEeCCC---CeEEEEeCCCCEEEE
Q psy8782 227 APVALATAP-DGSLFVGDF-NLIRRIM--TD----GTVRTVVRLNVTRVA-YRYHIAYSPLD---GTLYISDPESHQILR 294 (482)
Q Consensus 227 ~P~giavd~-~G~lyv~D~-~~I~~i~--~~----G~v~~~~g~~~~~~~-~p~giavd~~~---g~lyVaD~~n~~I~~ 294 (482)
.|.++++|+ .|.|||++. ..|++++ |+ ++++..++ ...+. .+.||++.+.. +.|++++.+++....
T Consensus 181 q~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~--~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~V 258 (355)
T 3amr_A 181 QTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD--GRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAI 258 (355)
T ss_dssp CEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBS--SSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEE
T ss_pred CcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEec--CCccccCcceEEEEecCCCCEEEEEEcCCCCEEEE
Confidence 688999997 689999999 6799999 44 34443332 23343 79999996422 479999999999999
Q ss_pred Eec
Q psy8782 295 VKN 297 (482)
Q Consensus 295 ~~~ 297 (482)
++.
T Consensus 259 ydr 261 (355)
T 3amr_A 259 YDR 261 (355)
T ss_dssp EES
T ss_pred EEC
Confidence 985
No 146
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=97.27 E-value=0.012 Score=58.86 Aligned_cols=67 Identities=4% Similarity=-0.034 Sum_probs=48.1
Q ss_pred CccE---EEEcCCC-CEEEEEC----------CcEEEEcC-CCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeC-CCC
Q psy8782 227 APVA---LATAPDG-SLFVGDF----------NLIRRIMT-DGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDP-ESH 290 (482)
Q Consensus 227 ~P~g---iavd~~G-~lyv~D~----------~~I~~i~~-~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~-~n~ 290 (482)
.|.+ ++++++| .+||+.. +.+..||. .+++...+..+. .|.+|++++++..+|++.. ..+
T Consensus 262 ~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~----~p~gi~~s~Dg~~l~va~~~~~~ 337 (368)
T 1mda_H 262 RSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH----DSDAIIAAQDGASDNYANSAGTE 337 (368)
T ss_dssp EECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE----EECEEEECCSSSCEEEEEETTTT
T ss_pred ccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC----CcceEEECCCCCEEEEEccCCCC
Confidence 3555 8899986 7999753 25668884 455554443222 6999999994346999988 699
Q ss_pred EEEEEec
Q psy8782 291 QILRVKN 297 (482)
Q Consensus 291 ~I~~~~~ 297 (482)
.|..||.
T Consensus 338 ~VsVID~ 344 (368)
T 1mda_H 338 VLDIYDA 344 (368)
T ss_dssp EEEEEES
T ss_pred eEEEEEC
Confidence 9999996
No 147
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=97.19 E-value=0.076 Score=54.27 Aligned_cols=153 Identities=14% Similarity=0.018 Sum_probs=89.0
Q ss_pred ccEEEEcCCCCEEEEE---------------------CCcEEEEcCC-CeEEEEEeeccCCCCceeeEEE--eCCCCeEE
Q psy8782 228 PVALATAPDGSLFVGD---------------------FNLIRRIMTD-GTVRTVVRLNVTRVAYRYHIAY--SPLDGTLY 283 (482)
Q Consensus 228 P~giavd~~G~lyv~D---------------------~~~I~~i~~~-G~v~~~~g~~~~~~~~p~giav--d~~~g~ly 283 (482)
+.++.+.|+++++++. .++|..++.+ +++...+..+. .-..|.+|.+ +|+...+|
T Consensus 190 ~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~-~g~~P~~i~f~~~Pdg~~aY 268 (462)
T 2ece_A 190 AYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGE-ENRMALELRPLHDPTKLMGF 268 (462)
T ss_dssp CCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCT-TEEEEEEEEECSSTTCCEEE
T ss_pred cceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCC-CCCccceeEeeECCCCCEEE
Confidence 4567778888655444 3789999854 55555444321 1236888877 99666899
Q ss_pred EEeC-----CCCEEEEEecCCccCCCCCcEEEEe--cCCcccCCCCCCccCCCcccc----ccccCCcceEEEeCCCc-E
Q psy8782 284 ISDP-----ESHQILRVKNAMDFSAPDYNVEPAV--GSGERCLPGDEAHCGDGAPAR----DAKLAYPKGVAVSADNI-L 351 (482)
Q Consensus 284 VaD~-----~n~~I~~~~~~~~~~~~~g~~~~va--G~g~~~~~g~~~~~gdg~~a~----~a~l~~P~giavd~~G~-l 351 (482)
|+.. .++.|..+... +|.++... -..... ..+ -.+.. .+.-..|.+|++++||. |
T Consensus 269 V~~e~~~~~Lss~V~v~~~d------~g~~~~~~vIdi~~~~------v~~-~lp~~~~~f~~~~~~pa~I~lS~DGrfL 335 (462)
T 2ece_A 269 INMVVSLKDLSSSIWLWFYE------DGKWNAEKVIEIPAEP------LEG-NLPEILKPFKAVPPLVTDIDISLDDKFL 335 (462)
T ss_dssp EEEEEETTTCCEEEEEEEEE------TTEEEEEEEEEECCEE------CCS-SCCGGGGGGTEECCCCCCEEECTTSCEE
T ss_pred EEEeeeccCCCceEEEEEec------CCceeEEEEEeCCCcc------ccc-cccccccccccCCCceeEEEECCCCCEE
Confidence 9988 88888877642 24322211 011100 000 00000 00125699999999985 9
Q ss_pred EEEECCC--EEEEcCC----CcEEEEEcCCCC--------------CCCCCcCCCCc-eEEecc
Q psy8782 352 YFADGTN--IRMVDRD----GIVTTVIGNHMH--------------KSHWKPIPCEG-TLNIEE 394 (482)
Q Consensus 352 yvaD~~n--Ir~i~~~----G~i~ti~G~~~~--------------~~~~~~~~~dg-~l~v~~ 394 (482)
||+..+. |++++-+ .++...+..++. .|....+++|| .||++.
T Consensus 336 YVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 336 YLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp EEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 9999977 8888742 344444434422 24556667777 566644
No 148
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=97.08 E-value=0.19 Score=48.43 Aligned_cols=150 Identities=10% Similarity=-0.036 Sum_probs=83.9
Q ss_pred ceEEEEcCCCcEEEEeC--CcEEEEcCC-Ce---EEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCC
Q psy8782 122 PVALATAPDGSLFVGDF--NLIRRIMTD-GT---VRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKP 195 (482)
Q Consensus 122 P~glavd~~G~lyvaD~--~~Irki~~~-G~---v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~ 195 (482)
...+++.++|+++++-. +.|+.++.+ ++ +.++.+.. .....+.+.+++..++....+
T Consensus 11 i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~-----------------~~v~~~~~~~~~~~l~~~~~d 73 (372)
T 1k8k_C 11 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHN-----------------GQVTGVDWAPDSNRIVTCGTD 73 (372)
T ss_dssp CCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCS-----------------SCEEEEEEETTTTEEEEEETT
T ss_pred eEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCC-----------------CcccEEEEeCCCCEEEEEcCC
Confidence 46788999998766654 778877754 43 22332210 123567777777777777666
Q ss_pred CeEEEEc-CCCccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEE-C-CcEEEEcCCC-e-EEEEEeeccCCCCce
Q psy8782 196 RIIKTTL-GDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGD-F-NLIRRIMTDG-T-VRTVVRLNVTRVAYR 270 (482)
Q Consensus 196 ~~i~~~~-g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D-~-~~I~~i~~~G-~-v~~~~g~~~~~~~~p 270 (482)
+.+..+. .+++..... . ....-.....+++.+++.++++- . +.|+.++.+. . ...............
T Consensus 74 g~i~vwd~~~~~~~~~~--~------~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i 145 (372)
T 1k8k_C 74 RNAYVWTLKGRTWKPTL--V------ILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTV 145 (372)
T ss_dssp SCEEEEEEETTEEEEEE--E------CCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCE
T ss_pred CeEEEEECCCCeeeeeE--E------eecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCe
Confidence 6555543 222211000 0 00112246789999988655544 4 6777765322 1 111111111223457
Q ss_pred eeEEEeCCCCeEEEEeCCCCEEEEEec
Q psy8782 271 YHIAYSPLDGTLYISDPESHQILRVKN 297 (482)
Q Consensus 271 ~giavd~~~g~lyVaD~~n~~I~~~~~ 297 (482)
..++++| ++.++++-...+.|+.++.
T Consensus 146 ~~~~~~~-~~~~l~~~~~dg~i~~~d~ 171 (372)
T 1k8k_C 146 LSLDWHP-NSVLLAAGSCDFKCRIFSA 171 (372)
T ss_dssp EEEEECT-TSSEEEEEETTSCEEEEEC
T ss_pred eEEEEcC-CCCEEEEEcCCCCEEEEEc
Confidence 8899999 7766666666788888874
No 149
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=97.02 E-value=0.15 Score=47.03 Aligned_cols=145 Identities=20% Similarity=0.184 Sum_probs=78.2
Q ss_pred CceEEEEcCCCcEEEEeC-CcEEEEcCCC--eEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcC---
Q psy8782 121 APVALATAPDGSLFVGDF-NLIRRIMTDG--TVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNK--- 194 (482)
Q Consensus 121 ~P~glavd~~G~lyvaD~-~~Irki~~~G--~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~--- 194 (482)
.+..+++.|+|..+++.. ..|+.++.++ +...+..... ......+.+.+++..+++...
T Consensus 43 ~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~---------------~~~~~~~~~spdg~~l~~~~~~~~ 107 (297)
T 2ojh_A 43 LFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFA---------------TICNNDHGISPDGALYAISDKVEF 107 (297)
T ss_dssp CCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTC---------------CCBCSCCEECTTSSEEEEEECTTT
T ss_pred ceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccc---------------cccccceEECCCCCEEEEEEeCCC
Confidence 356788999998555544 7888887644 3333221100 011345666677766666541
Q ss_pred -CCeEEEEc-CCCccccCCCcCCCCCCCceeecCCccEEEEcCCCC-EEEEEC--C--cEEEEcCC-CeEEEEEeeccCC
Q psy8782 195 -PRIIKTTL-GDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGS-LFVGDF--N--LIRRIMTD-GTVRTVVRLNVTR 266 (482)
Q Consensus 195 -~~~i~~~~-g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~-lyv~D~--~--~I~~i~~~-G~v~~~~g~~~~~ 266 (482)
...+..+. .++..... .....+..+++.|+|. |+++.. . +|+.++.+ +....+. ..
T Consensus 108 ~~~~l~~~~~~~~~~~~~------------~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~----~~ 171 (297)
T 2ojh_A 108 GKSAIYLLPSTGGTPRLM------------TKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLT----HG 171 (297)
T ss_dssp SSCEEEEEETTCCCCEEC------------CSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECC----CS
T ss_pred CcceEEEEECCCCceEEe------------ecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcc----cC
Confidence 22333332 22221111 1111356778999986 444443 3 56666655 4443332 22
Q ss_pred CCceeeEEEeCCCCeEEEEe--CCCCEEEEEe
Q psy8782 267 VAYRYHIAYSPLDGTLYISD--PESHQILRVK 296 (482)
Q Consensus 267 ~~~p~giavd~~~g~lyVaD--~~n~~I~~~~ 296 (482)
...+..++++|++..|+++. ....+|+.++
T Consensus 172 ~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~ 203 (297)
T 2ojh_A 172 EGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVR 203 (297)
T ss_dssp SSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred CCccccceECCCCCEEEEEecCCCCccEEEEC
Confidence 34568899999444577664 3456777776
No 150
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=96.98 E-value=0.094 Score=51.73 Aligned_cols=190 Identities=12% Similarity=0.098 Sum_probs=105.5
Q ss_pred CceEEEEcCCCcEE-EEeC---CcEEEEcCC-CeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCC
Q psy8782 121 APVALATAPDGSLF-VGDF---NLIRRIMTD-GTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKP 195 (482)
Q Consensus 121 ~P~glavd~~G~ly-vaD~---~~Irki~~~-G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~ 195 (482)
.+..+++.|||.+. ++-. +.||.++.. ++........ ..-..+.+.+++..+..+..+
T Consensus 135 ~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~-----------------~~V~~v~fspdg~~l~s~s~~ 197 (365)
T 4h5i_A 135 YTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETR-----------------GEVKDLHFSTDGKVVAYITGS 197 (365)
T ss_dssp CEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECS-----------------SCCCEEEECTTSSEEEEECSS
T ss_pred CEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCC-----------------CceEEEEEccCCceEEeccce
Confidence 46789999999854 5543 678888764 5544433221 113556667776555555444
Q ss_pred CeEEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC--C----cEEEEcC-CCeEEEEEe-eccCCC
Q psy8782 196 RIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF--N----LIRRIMT-DGTVRTVVR-LNVTRV 267 (482)
Q Consensus 196 ~~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~--~----~I~~i~~-~G~v~~~~g-~~~~~~ 267 (482)
..+.....++....... ....-.....+++.|+|..+++-. + .++.++. .+....... .-....
T Consensus 198 ~~~~~~~~~~~~~~~~~--------~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 269 (365)
T 4h5i_A 198 SLEVISTVTGSCIARKT--------DFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRF 269 (365)
T ss_dssp CEEEEETTTCCEEEEEC--------CCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSC
T ss_pred eEEEEEeccCcceeeee--------cCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCC
Confidence 44444444443211000 000001245788889997776644 2 3555553 232211111 111223
Q ss_pred CceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEE-EEecCCcccCCCCCCccCCCccccccccCCcceEEEe
Q psy8782 268 AYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVE-PAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVS 346 (482)
Q Consensus 268 ~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~-~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd 346 (482)
.....++++| +|.+.++-...+.|+.++. .++... .+.. +.-.....|+|.
T Consensus 270 ~~V~~~~~Sp-dg~~lasgs~D~~V~iwd~------~~~~~~~~~~~---------------------gH~~~V~~v~fS 321 (365)
T 4h5i_A 270 KGITSMDVDM-KGELAVLASNDNSIALVKL------KDLSMSKIFKQ---------------------AHSFAITEVTIS 321 (365)
T ss_dssp SCEEEEEECT-TSCEEEEEETTSCEEEEET------TTTEEEEEETT---------------------SSSSCEEEEEEC
T ss_pred CCeEeEEECC-CCCceEEEcCCCEEEEEEC------CCCcEEEEecC---------------------cccCCEEEEEEC
Confidence 3457899999 8877777667788999985 344432 2210 011245789999
Q ss_pred CCCcEEEEECC-C-EEEEc
Q psy8782 347 ADNILYFADGT-N-IRMVD 363 (482)
Q Consensus 347 ~~G~lyvaD~~-n-Ir~i~ 363 (482)
|+|.+.++-+. + ||+.+
T Consensus 322 pdg~~laS~S~D~tvrvw~ 340 (365)
T 4h5i_A 322 PDSTYVASVSAANTIHIIK 340 (365)
T ss_dssp TTSCEEEEEETTSEEEEEE
T ss_pred CCCCEEEEEeCCCeEEEEE
Confidence 99998776543 3 88776
No 151
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=96.92 E-value=0.074 Score=56.18 Aligned_cols=184 Identities=13% Similarity=0.120 Sum_probs=107.7
Q ss_pred CC-CEEEEEC--CcEEEEcCCC-eEEEEEeeccCCCCceeeEEE-e-CCCCeEEEEe-----------------CCCCEE
Q psy8782 236 DG-SLFVGDF--NLIRRIMTDG-TVRTVVRLNVTRVAYRYHIAY-S-PLDGTLYISD-----------------PESHQI 292 (482)
Q Consensus 236 ~G-~lyv~D~--~~I~~i~~~G-~v~~~~g~~~~~~~~p~giav-d-~~~g~lyVaD-----------------~~n~~I 292 (482)
|| .|||+|. ++|.+|+.+- ++..++... ....|.|+++ + |..+.+|++. ...+.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip--~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIP--NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECS--SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCC--CCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence 55 7999998 6899999664 666655432 2246999998 4 7677999995 333466
Q ss_pred EEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCc-EEEEECCC-------------
Q psy8782 293 LRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNI-LYFADGTN------------- 358 (482)
Q Consensus 293 ~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~-lyvaD~~n------------- 358 (482)
-.++.. +..+..-+-. + .+|.+++++++|. +|++..+.
T Consensus 178 tvID~~------t~~v~~qI~V-------------g---------g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~ 229 (595)
T 1fwx_A 178 TAVDAD------KWEVAWQVLV-------------S---------GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAE 229 (595)
T ss_dssp EEEETT------TTEEEEEEEE-------------S---------SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCS
T ss_pred EEEECC------CCeEEEEEEe-------------C---------CCccceEECCCCCEEEEEecCcccCcchhhccccc
Confidence 666631 1111111000 0 2589999999875 77776542
Q ss_pred ---EEEEc--------CCCcEEEEEcCCCCCCCCCcCCCCceEEeccccc----e-eEEe---ecCcceEEeccc-----
Q psy8782 359 ---IRMVD--------RDGIVTTVIGNHMHKSHWKPIPCEGTLNIEEVSE----T-MRDI---RHTTGWACYGTG----- 414 (482)
Q Consensus 359 ---Ir~i~--------~~G~i~ti~G~~~~~~~~~~~~~dg~l~v~~~~~----~-~~~l---~~p~giav~~~g----- 414 (482)
|.+++ ++|+...+ ++ +.+-+... . ++.+ ..|+|+.++++|
T Consensus 230 ~d~v~V~~~~~~~~~v~~Gk~~~i---------------~~-V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V 293 (595)
T 1fwx_A 230 MDHIVVFNIAEIEKAIAAGDYQEL---------------NG-VKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCV 293 (595)
T ss_dssp EEEEEEEEHHHHHHHHHHTCSEEE---------------TT-EEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEE
T ss_pred cceEEEeeccceeEeccCCCeeEE---------------Cc-EEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEE
Confidence 44443 23332222 11 11211111 1 2222 248889888876
Q ss_pred ---CCCceEEEeeceee---------ee-eeeeeecccceeeeeeEEcCCCcEEEEeCCCCeeEEe
Q psy8782 415 ---DNDHMTLIHCYGVM---------QD-VVTSVFNNSHFLDVHFSHQDQDLFYFVKELPQKIRDD 467 (482)
Q Consensus 415 ---~n~~~~~~~~~g~~---------~~-~~~~~~n~~~~~~~~i~~~~~g~~yi~d~~n~rIrk~ 467 (482)
...++.+++..... .+ .+... .....|.+++++++|.+|++-+..+.|-|+
T Consensus 294 ~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v--~vG~gP~h~aF~~dG~aY~t~~ldsqV~kw 357 (595)
T 1fwx_A 294 AGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP--ELGLGPLHTAFDGRGNAYTSLFLDSQVVKW 357 (595)
T ss_dssp ECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC--BCCSCEEEEEECTTSEEEEEETTTTEEEEE
T ss_pred eCCCCCeEEEEECcccccccccccCcccceEEEc--CCCCCcceEEECCCCeEEEEEecCCcEEEE
Confidence 55567776654321 00 01111 111357899999999999999999988774
No 152
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=96.89 E-value=0.13 Score=55.46 Aligned_cols=122 Identities=10% Similarity=0.106 Sum_probs=67.1
Q ss_pred cCCccEEEEcCCCC-EEEEEC-C---------------------------------cEEEEcCC--CeEEEEEeeccCCC
Q psy8782 225 LLAPVALATAPDGS-LFVGDF-N---------------------------------LIRRIMTD--GTVRTVVRLNVTRV 267 (482)
Q Consensus 225 l~~P~giavd~~G~-lyv~D~-~---------------------------------~I~~i~~~--G~v~~~~g~~~~~~ 267 (482)
+..+.++++.|||. |+++.. . .|+.++.+ ++...+. .....-
T Consensus 208 ~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~-~~~~~~ 286 (741)
T 2ecf_A 208 MDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWID-LGKEQD 286 (741)
T ss_dssp SCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEEC-CCSCSS
T ss_pred cccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEec-CCCCcc
Confidence 33467899999995 666643 1 56667654 3333221 111122
Q ss_pred CceeeEEEeCCCCeEEEEeC----CCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceE
Q psy8782 268 AYRYHIAYSPLDGTLYISDP----ESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGV 343 (482)
Q Consensus 268 ~~p~giavd~~~g~lyVaD~----~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~gi 343 (482)
.....+++ |++..|+++.. ....|+.++. .+|....+..... + ..+.....+
T Consensus 287 ~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~------~~g~~~~~~~~~~-----------~------~~~~~~~~~ 342 (741)
T 2ecf_A 287 IYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTL------ASNQQRVLAHETS-----------P------TWVPLHNSL 342 (741)
T ss_dssp EEEEEEEE-EETTEEEEEEEETTSSEEEEEEEET------TTCCEEEEEEEEC-----------S------SCCCCCSCC
T ss_pred eEEEEEEe-CCCCEEEEEEecccCCeEEEEEEEC------CCCceEEEEEcCC-----------C------CcCCcCCce
Confidence 34567889 84446766542 3467888885 3555544432100 0 001123467
Q ss_pred EEeCCCcEEEEECCC----EEEEcCCCcEEEE
Q psy8782 344 AVSADNILYFADGTN----IRMVDRDGIVTTV 371 (482)
Q Consensus 344 avd~~G~lyvaD~~n----Ir~i~~~G~i~ti 371 (482)
++.++|.++++.... |..++.+|.+.++
T Consensus 343 ~~spdg~~~~~~~~~g~~~l~~~~~~~~~~~l 374 (741)
T 2ecf_A 343 RFLDDGSILWSSERTGFQHLYRIDSKGKAAAL 374 (741)
T ss_dssp EECTTSCEEEEECTTSSCEEEEECSSSCEEES
T ss_pred EECCCCeEEEEecCCCccEEEEEcCCCCeeee
Confidence 888999866654322 7778876664433
No 153
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=96.88 E-value=0.011 Score=62.71 Aligned_cols=127 Identities=19% Similarity=0.242 Sum_probs=73.1
Q ss_pred cCCCCceeeEEEeCCCCeEEEEeCCC---------------------CEEEEEecCCccCC-CCCcEE--EEecCCcccC
Q psy8782 264 VTRVAYRYHIAYSPLDGTLYISDPES---------------------HQILRVKNAMDFSA-PDYNVE--PAVGSGERCL 319 (482)
Q Consensus 264 ~~~~~~p~giavd~~~g~lyVaD~~n---------------------~~I~~~~~~~~~~~-~~g~~~--~vaG~g~~~~ 319 (482)
+..|..|.+++++|.++.+|++-+.+ ++|+++.....-.. ....++ +++|.....
T Consensus 380 AT~f~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~- 458 (592)
T 3zwu_A 380 ATRMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVH- 458 (592)
T ss_dssp CCCEECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTS-
T ss_pred eEEEeccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCcccc-
Confidence 45688999999999899999997753 57999975322110 011223 333432210
Q ss_pred CCCCCccCCCccccccccCCcceEEEeCCCcEEEEECC-------------C-EEEEcC-CCcEEEEEcCCCC-CCCCCc
Q psy8782 320 PGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADGT-------------N-IRMVDR-DGIVTTVIGNHMH-KSHWKP 383 (482)
Q Consensus 320 ~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~~-------------n-Ir~i~~-~G~i~ti~G~~~~-~~~~~~ 383 (482)
......+.........|..|.+|+||+.|+|||++-+ | +...++ .|++..++-.... ...+..
T Consensus 459 -~~~~~~~~~~~~~~~~f~~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~ 537 (592)
T 3zwu_A 459 -AGTPKGGSSNITPQNMFNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGIS 537 (592)
T ss_dssp -TTSGGGCCTTCCTTTCCCCEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEE
T ss_pred -cccccccccccCCCCCccCCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCee
Confidence 0000111111223456999999999999999998532 2 556665 5888777643221 112334
Q ss_pred CCCCc-eEEe
Q psy8782 384 IPCEG-TLNI 392 (482)
Q Consensus 384 ~~~dg-~l~v 392 (482)
+++|+ .||+
T Consensus 538 fspDg~tlfv 547 (592)
T 3zwu_A 538 FSPDQKTLFV 547 (592)
T ss_dssp ECTTSSEEEE
T ss_pred ECCCCCEEEE
Confidence 45565 5655
No 154
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=96.85 E-value=0.4 Score=46.88 Aligned_cols=199 Identities=13% Similarity=0.064 Sum_probs=104.0
Q ss_pred CCceEEEEcCCCc-EEEE-eC-CcEEEEcC-----CCe------EEEEEeeCCCcccCCCccccccccccCCceEEEecC
Q psy8782 120 LAPVALATAPDGS-LFVG-DF-NLIRRIMT-----DGT------VRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGD 185 (482)
Q Consensus 120 ~~P~glavd~~G~-lyva-D~-~~Irki~~-----~G~------v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~ 185 (482)
....++++.|+|. ++++ .. +.|+.++. ++. ..........+..... .-......+.+.++
T Consensus 46 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~s~~ 119 (425)
T 1r5m_A 46 DNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSG------KTTNQVTCLAWSHD 119 (425)
T ss_dssp SCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------------CBCEEEEEECTT
T ss_pred CceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccccccccccc------CCCCceEEEEEcCC
Confidence 4567899999998 5544 44 66766654 344 1221111100000000 00012356667777
Q ss_pred CCeEEEEcCCCeEEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcCCCCE-EEEEC-CcEEEEcC-CCeEEEEEee
Q psy8782 186 GSNIYLKNKPRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSL-FVGDF-NLIRRIMT-DGTVRTVVRL 262 (482)
Q Consensus 186 g~~lyi~d~~~~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~l-yv~D~-~~I~~i~~-~G~v~~~~g~ 262 (482)
+..++....++.+..+..++..... ....-.....+++.|++.. +.+.. +.|+.++. +++....+..
T Consensus 120 ~~~l~~~~~dg~i~i~~~~~~~~~~----------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 189 (425)
T 1r5m_A 120 GNSIVTGVENGELRLWNKTGALLNV----------LNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFEL 189 (425)
T ss_dssp SSEEEEEETTSCEEEEETTSCEEEE----------ECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECC
T ss_pred CCEEEEEeCCCeEEEEeCCCCeeee----------ccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeec
Confidence 7777777777777766544432110 0111234578999998864 44454 78888885 5665554432
Q ss_pred ccCC------------CCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCc-EEEEecCCcccCCCCCCccCCC
Q psy8782 263 NVTR------------VAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYN-VEPAVGSGERCLPGDEAHCGDG 329 (482)
Q Consensus 263 ~~~~------------~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~-~~~vaG~g~~~~~g~~~~~gdg 329 (482)
.... ......+++++ ++.+++ -...+.|+.++.. .+. +..+.+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~g~i~~~d~~------~~~~~~~~~~---------------- 245 (425)
T 1r5m_A 190 KETGGSSINAENHSGDGSLGVDVEWVD-DDKFVI-PGPKGAIFVYQIT------EKTPTGKLIG---------------- 245 (425)
T ss_dssp C---------------CCCBSCCEEEE-TTEEEE-ECGGGCEEEEETT------CSSCSEEECC----------------
T ss_pred cccCccceeeccccCCcceeeEEEEcC-CCEEEE-EcCCCeEEEEEcC------CCceeeeecc----------------
Confidence 1111 01156788887 665444 4556788888852 221 111111
Q ss_pred ccccccccCCcceEEEeCCCcEEEEEC-CC-EEEEcC
Q psy8782 330 APARDAKLAYPKGVAVSADNILYFADG-TN-IRMVDR 364 (482)
Q Consensus 330 ~~a~~a~l~~P~giavd~~G~lyvaD~-~n-Ir~i~~ 364 (482)
.-.....+++.+++.++++-. .. |++.+.
T Consensus 246 ------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~ 276 (425)
T 1r5m_A 246 ------HHGPISVLEFNDTNKLLLSASDDGTLRIWHG 276 (425)
T ss_dssp ------CSSCEEEEEEETTTTEEEEEETTSCEEEECS
T ss_pred ------CCCceEEEEECCCCCEEEEEcCCCEEEEEEC
Confidence 112346789999887555443 33 888874
No 155
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=96.85 E-value=0.4 Score=46.80 Aligned_cols=192 Identities=16% Similarity=0.037 Sum_probs=102.8
Q ss_pred CceEEEEcCCCcEEEEeC--CcEEEEcCCC--------eEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEE
Q psy8782 121 APVALATAPDGSLFVGDF--NLIRRIMTDG--------TVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIY 190 (482)
Q Consensus 121 ~P~glavd~~G~lyvaD~--~~Irki~~~G--------~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~ly 190 (482)
....+++.|+|.++++-. +.|+.++... ....+.+. ...-..+.+.+++..++
T Consensus 108 ~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h-----------------~~~v~~~~~~~~~~~l~ 170 (354)
T 2pbi_B 108 WVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMH-----------------TNYLSACSFTNSDMQIL 170 (354)
T ss_dssp CCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEEC-----------------SSCEEEEEECSSSSEEE
T ss_pred CEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeecc-----------------CCcEEEEEEeCCCCEEE
Confidence 456789999998877765 5555553210 01111110 00113455555555566
Q ss_pred EEcCCCeEEEEc-CCCccccCCCcCCCCCCCceeecCCccEEEEcC--CCCEEEEEC--CcEEEEcC-CCeEEEEEeecc
Q psy8782 191 LKNKPRIIKTTL-GDGHQRPLDCKDCNGEAGPKQRLLAPVALATAP--DGSLFVGDF--NLIRRIMT-DGTVRTVVRLNV 264 (482)
Q Consensus 191 i~d~~~~i~~~~-g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~--~G~lyv~D~--~~I~~i~~-~G~v~~~~g~~~ 264 (482)
.+..++.++... .+++.... ....-.....+++.+ +|+++++-. +.|+.++. +++....+.
T Consensus 171 t~s~D~~v~lwd~~~~~~~~~----------~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~--- 237 (354)
T 2pbi_B 171 TASGDGTCALWDVESGQLLQS----------FHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFE--- 237 (354)
T ss_dssp EEETTSEEEEEETTTCCEEEE----------EECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEEC---
T ss_pred EEeCCCcEEEEeCCCCeEEEE----------EcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEec---
Confidence 555566555543 22221100 000111234566655 566555544 78888884 566554442
Q ss_pred CCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEE
Q psy8782 265 TRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVA 344 (482)
Q Consensus 265 ~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~gia 344 (482)
..-.....++++| ++.++++-...+.|+.++.. .+....+... . ........++
T Consensus 238 ~h~~~v~~v~~~p-~~~~l~s~s~D~~v~lwd~~------~~~~~~~~~~-------------~------~~~~~~~~~~ 291 (354)
T 2pbi_B 238 THESDVNSVRYYP-SGDAFASGSDDATCRLYDLR------ADREVAIYSK-------------E------SIIFGASSVD 291 (354)
T ss_dssp CCSSCEEEEEECT-TSSEEEEEETTSCEEEEETT------TTEEEEEECC-------------T------TCCSCEEEEE
T ss_pred CCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEECC------CCcEEEEEcC-------------C------CcccceeEEE
Confidence 2223467899999 77777777778889988852 2222111110 0 0122356789
Q ss_pred EeCCCcEEEEEC-CC-EEEEcC-CCcE
Q psy8782 345 VSADNILYFADG-TN-IRMVDR-DGIV 368 (482)
Q Consensus 345 vd~~G~lyvaD~-~n-Ir~i~~-~G~i 368 (482)
+.++|.+.++-. .+ |++.|. +|..
T Consensus 292 ~s~~g~~l~~g~~d~~i~vwd~~~~~~ 318 (354)
T 2pbi_B 292 FSLSGRLLFAGYNDYTINVWDVLKGSR 318 (354)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCSE
T ss_pred EeCCCCEEEEEECCCcEEEEECCCCce
Confidence 999998766544 33 888885 5553
No 156
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=96.81 E-value=0.41 Score=47.97 Aligned_cols=129 Identities=19% Similarity=0.157 Sum_probs=72.8
Q ss_pred CccEEEEcCCCC-EEEEEC----CcEEEEcCC-CeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeC--CCCEEEEEecC
Q psy8782 227 APVALATAPDGS-LFVGDF----NLIRRIMTD-GTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDP--ESHQILRVKNA 298 (482)
Q Consensus 227 ~P~giavd~~G~-lyv~D~----~~I~~i~~~-G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~--~n~~I~~~~~~ 298 (482)
....+++.|||. |+++.. ..|+.++.. ++..++.+ .......++++|++..|+++.. +..+|+.++.
T Consensus 224 ~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~----~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~- 298 (415)
T 2hqs_A 224 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTD----GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNI- 298 (415)
T ss_dssp CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCC----CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET-
T ss_pred cccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcC----CCCcccceEECCCCCEEEEEECCCCCcEEEEEEC-
Confidence 356889999997 554543 458988864 55544322 1234577899994445666543 3348888885
Q ss_pred CccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCc-EEEEECC----CEEEEcC-CCcEEEEE
Q psy8782 299 MDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNI-LYFADGT----NIRMVDR-DGIVTTVI 372 (482)
Q Consensus 299 ~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~-lyvaD~~----nIr~i~~-~G~i~ti~ 372 (482)
..+....+.. .+ .....++++++|. |+++... .|++++. .|.+..+.
T Consensus 299 -----~~~~~~~l~~--------------~~--------~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~ 351 (415)
T 2hqs_A 299 -----NGGAPQRITW--------------EG--------SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLS 351 (415)
T ss_dssp -----TSSCCEECCC--------------SS--------SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECC
T ss_pred -----CCCCEEEEec--------------CC--------CcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEec
Confidence 2333222211 01 1245688999986 5555432 3888886 45665543
Q ss_pred cCCCCCCCCCcCCCCce
Q psy8782 373 GNHMHKSHWKPIPCEGT 389 (482)
Q Consensus 373 G~~~~~~~~~~~~~dg~ 389 (482)
... ......+++||.
T Consensus 352 ~~~--~~~~~~~spdg~ 366 (415)
T 2hqs_A 352 STF--LDETPSLAPNGT 366 (415)
T ss_dssp CSS--SCEEEEECTTSS
T ss_pred CCC--CcCCeEEcCCCC
Confidence 322 111234456664
No 157
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=96.78 E-value=0.42 Score=46.12 Aligned_cols=188 Identities=9% Similarity=-0.011 Sum_probs=107.0
Q ss_pred CceEEEEcCCCcEEEEeC--CcEEEEcC-CCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCCCe
Q psy8782 121 APVALATAPDGSLFVGDF--NLIRRIMT-DGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKPRI 197 (482)
Q Consensus 121 ~P~glavd~~G~lyvaD~--~~Irki~~-~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~~~ 197 (482)
...++++.++|.++++-. +.|+..+. +++......... .....+.+.+++..+.....++.
T Consensus 57 ~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~----------------~~v~~~~~s~~~~~l~s~~~d~~ 120 (340)
T 1got_B 57 KIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRS----------------SWVMTCAYAPSGNYVACGGLDNI 120 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSS----------------SCEEEEEECTTSSEEEEEETTCE
T ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCC----------------ccEEEEEECCCCCEEEEEeCCCe
Confidence 456788888888766554 67777764 344332221110 01234556666665665555666
Q ss_pred EEEEcCC-Cc--cccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC-CcEEEEcC-CCeEEEEEeeccCCCCceee
Q psy8782 198 IKTTLGD-GH--QRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF-NLIRRIMT-DGTVRTVVRLNVTRVAYRYH 272 (482)
Q Consensus 198 i~~~~g~-G~--~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~-~~I~~i~~-~G~v~~~~g~~~~~~~~p~g 272 (482)
+..+.-. +. ..... . ....-.....+++.+++.|+.+.. +.|+.++. +++....+. ..-.....
T Consensus 121 v~iw~~~~~~~~~~~~~--~------~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~---~h~~~v~~ 189 (340)
T 1got_B 121 CSIYNLKTREGNVRVSR--E------LAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFT---GHTGDVMS 189 (340)
T ss_dssp EEEEETTTCSBSCEEEE--E------EECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEEC---CCSSCEEE
T ss_pred EEEEECccCCCcceeEE--E------ecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEc---CCCCceEE
Confidence 6655321 10 00000 0 001112234566667777766666 78888884 566554442 12234678
Q ss_pred EEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcE-EEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcE
Q psy8782 273 IAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNV-EPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNIL 351 (482)
Q Consensus 273 iavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~-~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~l 351 (482)
++++| ++.++++-...+.|+.++. .++.. .++.+. -.....+++.|+|.+
T Consensus 190 ~~~~~-~~~~l~sg~~d~~v~~wd~------~~~~~~~~~~~h----------------------~~~v~~v~~~p~~~~ 240 (340)
T 1got_B 190 LSLAP-DTRLFVSGACDASAKLWDV------REGMCRQTFTGH----------------------ESDINAICFFPNGNA 240 (340)
T ss_dssp EEECT-TSSEEEEEETTSCEEEEET------TTCSEEEEECCC----------------------SSCEEEEEECTTSSE
T ss_pred EEECC-CCCEEEEEeCCCcEEEEEC------CCCeeEEEEcCC----------------------cCCEEEEEEcCCCCE
Confidence 99999 8888888777889999985 23332 222210 123568999999987
Q ss_pred EEEECCC--EEEEcC
Q psy8782 352 YFADGTN--IRMVDR 364 (482)
Q Consensus 352 yvaD~~n--Ir~i~~ 364 (482)
+++-+.. ||..|.
T Consensus 241 l~s~s~d~~v~iwd~ 255 (340)
T 1got_B 241 FATGSDDATCRLFDL 255 (340)
T ss_dssp EEEEETTSCEEEEET
T ss_pred EEEEcCCCcEEEEEC
Confidence 7665433 888885
No 158
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=96.76 E-value=0.37 Score=46.52 Aligned_cols=148 Identities=10% Similarity=-0.059 Sum_probs=84.6
Q ss_pred ceEEEEcCCCcEEEEeC-CcEEEEcC-CCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCCCeEE
Q psy8782 122 PVALATAPDGSLFVGDF-NLIRRIMT-DGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKPRIIK 199 (482)
Q Consensus 122 P~glavd~~G~lyvaD~-~~Irki~~-~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~~~i~ 199 (482)
...+++.+++.|+.+.. +.|+..+. ++.......... .....+.+.+++..+.....++.++
T Consensus 146 v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~----------------~~v~~~~~~~~~~~l~sg~~d~~v~ 209 (340)
T 1got_B 146 LSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHT----------------GDVMSLSLAPDTRLFVSGACDASAK 209 (340)
T ss_dssp EEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCS----------------SCEEEEEECTTSSEEEEEETTSCEE
T ss_pred EEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCC----------------CceEEEEECCCCCEEEEEeCCCcEE
Confidence 34566666777666666 67777775 355433221100 0123455555554444445555555
Q ss_pred EEcC-CCccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC--CcEEEEcCC-CeEEEEEeeccCCCCceeeEEE
Q psy8782 200 TTLG-DGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF--NLIRRIMTD-GTVRTVVRLNVTRVAYRYHIAY 275 (482)
Q Consensus 200 ~~~g-~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~--~~I~~i~~~-G~v~~~~g~~~~~~~~p~giav 275 (482)
...- ++..... ....-.....+++.|+|.++++-. +.|+.++.. ++....... .........+++
T Consensus 210 ~wd~~~~~~~~~----------~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~-~~~~~~v~~~~~ 278 (340)
T 1got_B 210 LWDVREGMCRQT----------FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH-DNIICGITSVSF 278 (340)
T ss_dssp EEETTTCSEEEE----------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-TTCCSCEEEEEE
T ss_pred EEECCCCeeEEE----------EcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEcc-CCcccceEEEEE
Confidence 5432 2221100 001112456899999998777666 789999854 444433321 122234578999
Q ss_pred eCCCCeEEEEeCCCCEEEEEec
Q psy8782 276 SPLDGTLYISDPESHQILRVKN 297 (482)
Q Consensus 276 d~~~g~lyVaD~~n~~I~~~~~ 297 (482)
+| ++.+.++-...+.|+.++.
T Consensus 279 s~-~g~~l~~g~~d~~i~vwd~ 299 (340)
T 1got_B 279 SK-SGRLLLAGYDDFNCNVWDA 299 (340)
T ss_dssp CT-TSSEEEEEETTSEEEEEET
T ss_pred CC-CCCEEEEECCCCeEEEEEc
Confidence 99 8888888778899999985
No 159
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=96.72 E-value=0.86 Score=48.80 Aligned_cols=193 Identities=14% Similarity=0.096 Sum_probs=111.1
Q ss_pred CceEEEEcCCCcEEEEeC--CcEEEEcCC-CeEEE-EEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCCC
Q psy8782 121 APVALATAPDGSLFVGDF--NLIRRIMTD-GTVRT-VVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKPR 196 (482)
Q Consensus 121 ~P~glavd~~G~lyvaD~--~~Irki~~~-G~v~t-i~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~~ 196 (482)
....+++.++|.+.++-. +.|+..+.. +.... +.+.. ..-..+.+.+++..+..+..++
T Consensus 432 ~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~-----------------~~v~~~~~s~~~~~l~s~s~D~ 494 (694)
T 3dm0_A 432 FVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHT-----------------KDVLSVAFSLDNRQIVSASRDR 494 (694)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCS-----------------SCEEEEEECTTSSCEEEEETTS
T ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCC-----------------CCEEEEEEeCCCCEEEEEeCCC
Confidence 456789999998776654 788888753 54433 32211 0124566667776666666666
Q ss_pred eEEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcCCC--CEEEE-EC-CcEEEEcCC-CeEEEEEeeccCCCCcee
Q psy8782 197 IIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDG--SLFVG-DF-NLIRRIMTD-GTVRTVVRLNVTRVAYRY 271 (482)
Q Consensus 197 ~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G--~lyv~-D~-~~I~~i~~~-G~v~~~~g~~~~~~~~p~ 271 (482)
.|+...-.+......... ....-.....+++.+++ .++++ .. +.|+.++.. ++....+. ..-....
T Consensus 495 ~i~iwd~~~~~~~~~~~~------~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~---~h~~~v~ 565 (694)
T 3dm0_A 495 TIKLWNTLGECKYTISEG------GEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLA---GHTGYVS 565 (694)
T ss_dssp CEEEECTTSCEEEEECSS------TTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEEC---CCSSCEE
T ss_pred EEEEEECCCCcceeeccC------CCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEc---CCCCCEE
Confidence 666664332211000000 00111234578888876 34444 33 788888853 45444432 2223467
Q ss_pred eEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcE
Q psy8782 272 HIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNIL 351 (482)
Q Consensus 272 giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~l 351 (482)
.++++| ++.+.++-...+.|+.++. .++...... .. -.....+++.+++.+
T Consensus 566 ~v~~sp-dg~~l~sg~~Dg~i~iwd~------~~~~~~~~~-------------~~---------~~~v~~~~~sp~~~~ 616 (694)
T 3dm0_A 566 TVAVSP-DGSLCASGGKDGVVLLWDL------AEGKKLYSL-------------EA---------NSVIHALCFSPNRYW 616 (694)
T ss_dssp EEEECT-TSSEEEEEETTSBCEEEET------TTTEEEECC-------------BC---------SSCEEEEEECSSSSE
T ss_pred EEEEeC-CCCEEEEEeCCCeEEEEEC------CCCceEEEe-------------cC---------CCcEEEEEEcCCCcE
Confidence 899999 8888888777888998885 233321110 00 013567899999887
Q ss_pred EEEECCC-EEEEcC-CCcE
Q psy8782 352 YFADGTN-IRMVDR-DGIV 368 (482)
Q Consensus 352 yvaD~~n-Ir~i~~-~G~i 368 (482)
.++...+ |++.|. .+.+
T Consensus 617 l~~~~~~~i~iwd~~~~~~ 635 (694)
T 3dm0_A 617 LCAATEHGIKIWDLESKSI 635 (694)
T ss_dssp EEEEETTEEEEEETTTTEE
T ss_pred EEEEcCCCEEEEECCCCCC
Confidence 7665555 888885 3443
No 160
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=96.69 E-value=0.29 Score=49.14 Aligned_cols=187 Identities=14% Similarity=0.153 Sum_probs=102.1
Q ss_pred CceEEEEcCCCc-EEEEeC----CcEEEEcC-CCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEE-c
Q psy8782 121 APVALATAPDGS-LFVGDF----NLIRRIMT-DGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLK-N 193 (482)
Q Consensus 121 ~P~glavd~~G~-lyvaD~----~~Irki~~-~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~-d 193 (482)
....+++.|+|. |+++.. ..|+.++. +|+...+.+.. .....+.+.+++..|+++ .
T Consensus 180 ~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~-----------------~~~~~~~~spdg~~la~~~~ 242 (415)
T 2hqs_A 180 PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP-----------------RHNGAPAFSPDGSKLAFALS 242 (415)
T ss_dssp CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCS-----------------SCEEEEEECTTSSEEEEEEC
T ss_pred cceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCC-----------------CcccCEEEcCCCCEEEEEEe
Confidence 467789999997 444443 37888886 46665544321 012345556666555533 2
Q ss_pred C--CCeEEEEc-CCCccccCCCcCCCCCCCceeecCCccEEEEcCCCC-EEEEEC----CcEEEEcCCC-eEEEEEeecc
Q psy8782 194 K--PRIIKTTL-GDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGS-LFVGDF----NLIRRIMTDG-TVRTVVRLNV 264 (482)
Q Consensus 194 ~--~~~i~~~~-g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~-lyv~D~----~~I~~i~~~G-~v~~~~g~~~ 264 (482)
. ...+..+. .+++..... ..-.....+++.|||. |+++.. .+|++++.++ +...+.
T Consensus 243 ~~g~~~i~~~d~~~~~~~~l~-----------~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~---- 307 (415)
T 2hqs_A 243 KTGSLNLYVMDLASGQIRQVT-----------DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRIT---- 307 (415)
T ss_dssp TTSSCEEEEEETTTCCEEECC-----------CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECC----
T ss_pred cCCCceEEEEECCCCCEEeCc-----------CCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEe----
Confidence 1 22333332 223221110 0112345788999996 555543 2788888654 433321
Q ss_pred CCCCceeeEEEeCCCCeEEEEeCC--CCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcce
Q psy8782 265 TRVAYRYHIAYSPLDGTLYISDPE--SHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKG 342 (482)
Q Consensus 265 ~~~~~p~giavd~~~g~lyVaD~~--n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~g 342 (482)
........++++|++..|+++... ...|+.++. .++....+... .....
T Consensus 308 ~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~------~~~~~~~l~~~-----------------------~~~~~ 358 (415)
T 2hqs_A 308 WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDL------ATGGVQVLSST-----------------------FLDET 358 (415)
T ss_dssp CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEET------TTCCEEECCCS-----------------------SSCEE
T ss_pred cCCCcccCeEECCCCCEEEEEECcCCceEEEEEEC------CCCCEEEecCC-----------------------CCcCC
Confidence 112345678999944467776543 468888885 24444332210 13567
Q ss_pred EEEeCCCc-EEEEEC-C---CEEEEcCCCcE
Q psy8782 343 VAVSADNI-LYFADG-T---NIRMVDRDGIV 368 (482)
Q Consensus 343 iavd~~G~-lyvaD~-~---nIr~i~~~G~i 368 (482)
+++.++|. |+++.. . .|+.++.+|..
T Consensus 359 ~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~ 389 (415)
T 2hqs_A 359 PSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF 389 (415)
T ss_dssp EEECTTSSEEEEEEEETTEEEEEEEETTSCC
T ss_pred eEEcCCCCEEEEEEcCCCccEEEEEECCCCc
Confidence 88989887 444322 2 27778776653
No 161
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=96.68 E-value=0.6 Score=49.46 Aligned_cols=118 Identities=15% Similarity=0.129 Sum_probs=69.8
Q ss_pred CccEEEEcCCCC-EEEEEC-----------CcEEEEcCCC-------eEEEEEeeccCCCCceeeEEEeCCCCeEEEEeC
Q psy8782 227 APVALATAPDGS-LFVGDF-----------NLIRRIMTDG-------TVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDP 287 (482)
Q Consensus 227 ~P~giavd~~G~-lyv~D~-----------~~I~~i~~~G-------~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~ 287 (482)
.+..+++.|||. |+++.. ..|++++.++ ....+.. ........++++|++..|+++..
T Consensus 131 ~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~SpDG~~la~~~~ 207 (662)
T 3azo_A 131 RWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSD---DAHRFVTGPRLSPDGRQAVWLAW 207 (662)
T ss_dssp EEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSC---SCSSEECCCEECTTSSEEEEEEE
T ss_pred cccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEe---cCCCcccCceECCCCCEEEEEEC
Confidence 356789999995 544432 3788888765 3333320 11234567899994446766543
Q ss_pred C-------CCEEEEEecCCccCCCCC---cEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEEC-
Q psy8782 288 E-------SHQILRVKNAMDFSAPDY---NVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADG- 356 (482)
Q Consensus 288 ~-------n~~I~~~~~~~~~~~~~g---~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~- 356 (482)
. ...|+.++.. .+| ....+.... -..+..+++.++|.||++..
T Consensus 208 ~~~~~~~~~~~i~~~d~~-----~~g~~~~~~~l~~~~---------------------~~~~~~~~~spdg~l~~~~~~ 261 (662)
T 3azo_A 208 DHPRMPWEGTELKTARVT-----EDGRFADTRTLLGGP---------------------EEAIAQAEWAPDGSLIVATDR 261 (662)
T ss_dssp CTTCCTTTCEEEEEEEEC-----TTSCEEEEEEEEEET---------------------TBCEEEEEECTTSCEEEEECT
T ss_pred CCCCCCCCCcEEEEEEEC-----CCCcccccEEeCCCC---------------------CceEcceEECCCCeEEEEECC
Confidence 2 2578888852 134 344443210 12356788999998776643
Q ss_pred C---CEEEEcC-CCcEEEEEc
Q psy8782 357 T---NIRMVDR-DGIVTTVIG 373 (482)
Q Consensus 357 ~---nIr~i~~-~G~i~ti~G 373 (482)
. +|.+++. +|....+..
T Consensus 262 ~~~~~l~~~~~~~~~~~~l~~ 282 (662)
T 3azo_A 262 TGWWNLHRVDPATGAATQLCR 282 (662)
T ss_dssp TSSCEEEEECTTTCCEEESSC
T ss_pred CCCeEEEEEECCCCceeeccc
Confidence 2 3888886 677666543
No 162
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.67 E-value=0.97 Score=48.89 Aligned_cols=148 Identities=7% Similarity=-0.013 Sum_probs=89.0
Q ss_pred CceEEEEcCCCcEEEE-eC-CcEEEEcC-CCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCCCe
Q psy8782 121 APVALATAPDGSLFVG-DF-NLIRRIMT-DGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKPRI 197 (482)
Q Consensus 121 ~P~glavd~~G~lyva-D~-~~Irki~~-~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~~~ 197 (482)
...++++.|+|.+.++ .. +.|+.++. +|.......... .....+.+.+++..+.+...++.
T Consensus 15 ~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~----------------~~v~~~~~s~~~~~l~~~~~dg~ 78 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTE----------------TPVRAGKFIARKNWIIVGSDDFR 78 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCS----------------SCEEEEEEEGGGTEEEEEETTSE
T ss_pred ceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCC----------------CcEEEEEEeCCCCEEEEEeCCCe
Confidence 4678899999885544 44 67887774 465443332110 11356777777777777776776
Q ss_pred EEEEc-CCCccccCCCcCCCCCCCceeecCCccEEEEcCCCCE-EEEEC-CcEEEEcCC-C-eEEEEEeeccCCCCceee
Q psy8782 198 IKTTL-GDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSL-FVGDF-NLIRRIMTD-G-TVRTVVRLNVTRVAYRYH 272 (482)
Q Consensus 198 i~~~~-g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~l-yv~D~-~~I~~i~~~-G-~v~~~~g~~~~~~~~p~g 272 (482)
+.++. .++..... ....-.....+++.|+|.. +++.. +.|+.++.+ + .....+.. .-.....
T Consensus 79 i~vw~~~~~~~~~~----------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~---~~~~v~~ 145 (814)
T 3mkq_A 79 IRVFNYNTGEKVVD----------FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG---HEHFVMC 145 (814)
T ss_dssp EEEEETTTCCEEEE----------EECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEEC---CSSCEEE
T ss_pred EEEEECCCCcEEEE----------EecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcC---CCCcEEE
Confidence 66654 23332110 1112234678999999964 44444 678888743 2 44444322 2234678
Q ss_pred EEEeCCCCeEEEEeCCCCEEEEEec
Q psy8782 273 IAYSPLDGTLYISDPESHQILRVKN 297 (482)
Q Consensus 273 iavd~~~g~lyVaD~~n~~I~~~~~ 297 (482)
++++|.++.++++-...+.|+.++.
T Consensus 146 ~~~~p~~~~~l~~~~~dg~v~vwd~ 170 (814)
T 3mkq_A 146 VAFNPKDPSTFASGCLDRTVKVWSL 170 (814)
T ss_dssp EEEETTEEEEEEEEETTSEEEEEET
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 9999856667777777788998885
No 163
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=96.67 E-value=0.21 Score=46.05 Aligned_cols=113 Identities=18% Similarity=0.198 Sum_probs=62.2
Q ss_pred CccEEEEcCCCC-EEEEEC-----CcEEEEcCCCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCC--EEEEEecC
Q psy8782 227 APVALATAPDGS-LFVGDF-----NLIRRIMTDGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESH--QILRVKNA 298 (482)
Q Consensus 227 ~P~giavd~~G~-lyv~D~-----~~I~~i~~~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~--~I~~~~~~ 298 (482)
.+..+++.|+|. |+++.. .+|+.++.++.....+. .......++++|++..|+++....+ +|+.++.
T Consensus 86 ~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~- 160 (297)
T 2ojh_A 86 CNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMT----KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDI- 160 (297)
T ss_dssp BCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECC----SSSSEEEEEECTTSSEEEEEEEETTEEEEEEEET-
T ss_pred cccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEee----cCCCccceEECCCCCEEEEEECCCCceEEEEEEC-
Confidence 346788999986 444441 57888876543322221 1223677899994446775554444 5666653
Q ss_pred CccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCc-EEEEEC-C-C--EEEEcCC-CcEEEE
Q psy8782 299 MDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNI-LYFADG-T-N--IRMVDRD-GIVTTV 371 (482)
Q Consensus 299 ~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~-lyvaD~-~-n--Ir~i~~~-G~i~ti 371 (482)
..+....+.. .-..+..++++++|. |+++.. . . |..++.+ +.+..+
T Consensus 161 -----~~~~~~~~~~----------------------~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~ 212 (297)
T 2ojh_A 161 -----DSGVETRLTH----------------------GEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERI 212 (297)
T ss_dssp -----TTCCEEECCC----------------------SSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEEC
T ss_pred -----CCCcceEccc----------------------CCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEE
Confidence 2233332211 012457789999987 555542 2 2 6666643 445444
No 164
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=96.66 E-value=0.31 Score=47.55 Aligned_cols=193 Identities=9% Similarity=-0.016 Sum_probs=107.9
Q ss_pred CceEEEEcCCC-cEEEEeC--CcEEEEcCC-CeEEEEEee-CCCcccCCCccccccccccCCceEEEec-CCCeEEEEcC
Q psy8782 121 APVALATAPDG-SLFVGDF--NLIRRIMTD-GTVRTVVRL-KNQKFEKFPKILTSCFLSLSPSGILQKG-DGSNIYLKNK 194 (482)
Q Consensus 121 ~P~glavd~~G-~lyvaD~--~~Irki~~~-G~v~ti~g~-g~~~~~~~~~~~~~~~~~~~P~gi~~~~-~g~~lyi~d~ 194 (482)
....+++.++| .++++-. +.|+.++.+ +........ +.. ..-..+.+.+ ++..++.+..
T Consensus 75 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~---------------~~v~~~~~~~~~~~~l~s~~~ 139 (383)
T 3ei3_B 75 RVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPG---------------DAITGMKFNQFNTNQLFVSSI 139 (383)
T ss_dssp CEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTT---------------CBEEEEEEETTEEEEEEEEET
T ss_pred CEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcC---------------CceeEEEeCCCCCCEEEEEeC
Confidence 45678888888 5555443 678877764 333333211 100 0124555555 3344555555
Q ss_pred CCeEEEEcCCCcccc-CCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC--CcEEEEcCCCeEEEEEeeccCCCCcee
Q psy8782 195 PRIIKTTLGDGHQRP-LDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF--NLIRRIMTDGTVRTVVRLNVTRVAYRY 271 (482)
Q Consensus 195 ~~~i~~~~g~G~~~~-~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~--~~I~~i~~~G~v~~~~g~~~~~~~~p~ 271 (482)
++.+....-.+.... .. . ....-.....+++.+++.++++-. +.|+.++.+++....+.. ......
T Consensus 140 d~~i~iwd~~~~~~~~~~--~------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---h~~~v~ 208 (383)
T 3ei3_B 140 RGATTLRDFSGSVIQVFA--K------TDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKL---HKAKVT 208 (383)
T ss_dssp TTEEEEEETTSCEEEEEE--C------CCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEEC---SSSCEE
T ss_pred CCEEEEEECCCCceEEEe--c------cCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEecc---CCCcEE
Confidence 666665543322110 00 0 000112356899999987666555 789999988765554432 234568
Q ss_pred eEEEeCCCCe-EEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeC-CC
Q psy8782 272 HIAYSPLDGT-LYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSA-DN 349 (482)
Q Consensus 272 giavd~~~g~-lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~-~G 349 (482)
.++++| ++. ++++-...+.|+.++..... ..+......+ .-.....+++++ +|
T Consensus 209 ~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~----------------------~~~~v~~~~~s~~~~ 263 (383)
T 3ei3_B 209 HAEFNP-RCDWLMATSSVDATVKLWDLRNIK--DKNSYIAEMP----------------------HEKPVNAAYFNPTDS 263 (383)
T ss_dssp EEEECS-SCTTEEEEEETTSEEEEEEGGGCC--STTCEEEEEE----------------------CSSCEEEEEECTTTS
T ss_pred EEEECC-CCCCEEEEEeCCCEEEEEeCCCCC--cccceEEEec----------------------CCCceEEEEEcCCCC
Confidence 899999 665 77777778899998853200 0122222221 112457899999 88
Q ss_pred cEEEEEC-CC-EEEEcC
Q psy8782 350 ILYFADG-TN-IRMVDR 364 (482)
Q Consensus 350 ~lyvaD~-~n-Ir~i~~ 364 (482)
.++++-. .+ |+..+.
T Consensus 264 ~~l~~~~~d~~i~iwd~ 280 (383)
T 3ei3_B 264 TKLLTTDQRNEIRVYSS 280 (383)
T ss_dssp CEEEEEESSSEEEEEET
T ss_pred CEEEEEcCCCcEEEEEC
Confidence 7655443 33 888874
No 165
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=96.66 E-value=0.21 Score=48.81 Aligned_cols=196 Identities=12% Similarity=0.057 Sum_probs=109.8
Q ss_pred ceEEEEcCCCcEEEEeC-CcEEEEcCC-CeE-E--EEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCCC
Q psy8782 122 PVALATAPDGSLFVGDF-NLIRRIMTD-GTV-R--TVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKPR 196 (482)
Q Consensus 122 P~glavd~~G~lyvaD~-~~Irki~~~-G~v-~--ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~~ 196 (482)
-..|++.+++.|..+.. +.|+..+.+ ++. . .....+-. ..-..+.+.+++..|.....++
T Consensus 85 v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~---------------~~V~~v~~spdg~~l~sgs~d~ 149 (344)
T 4gqb_B 85 VADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHD---------------DIVSTVSVLSSGTQAVSGSKDI 149 (344)
T ss_dssp EEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCS---------------SCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCC---------------CCEEEEEECCCCCEEEEEeCCC
Confidence 56789999988887777 777777643 331 1 11111110 0124566677776666666666
Q ss_pred eEEEEc-CCCccccCCCcCCCCCCCceeecCCccEEEEcCCC-CEEEEEC--CcEEEEcC-CCeEEEEEeeccCCCCcee
Q psy8782 197 IIKTTL-GDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDG-SLFVGDF--NLIRRIMT-DGTVRTVVRLNVTRVAYRY 271 (482)
Q Consensus 197 ~i~~~~-g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G-~lyv~D~--~~I~~i~~-~G~v~~~~g~~~~~~~~p~ 271 (482)
.|+... .+++.... ....-.....+++.+++ .++++-. +.|+.++. .++....+.. ...-..+.
T Consensus 150 ~i~iwd~~~~~~~~~----------~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-~~~~~~~~ 218 (344)
T 4gqb_B 150 CIKVWDLAQQVVLSS----------YRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC-SAPGYLPT 218 (344)
T ss_dssp CEEEEETTTTEEEEE----------ECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-----CCCEE
T ss_pred eEEEEECCCCcEEEE----------EcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeec-ceeeccce
Confidence 666553 23332110 00111234678888877 5666544 78888874 4554433321 11122467
Q ss_pred eEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCc-EEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCc
Q psy8782 272 HIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYN-VEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNI 350 (482)
Q Consensus 272 giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~-~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~ 350 (482)
.++++|.++.++++-..++.|+.++.. ++. +..+.|. -..-..|++.++|.
T Consensus 219 ~~~~~p~~~~~l~sg~~dg~v~~wd~~------~~~~~~~~~~h----------------------~~~v~~v~fsp~g~ 270 (344)
T 4gqb_B 219 SLAWHPQQSEVFVFGDENGTVSLVDTK------STSCVLSSAVH----------------------SQCVTGLVFSPHSV 270 (344)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEESC------C--CCEEEECC----------------------SSCEEEEEECSSSS
T ss_pred eeeecCCCCcceEEeccCCcEEEEECC------CCcEEEEEcCC----------------------CCCEEEEEEccCCC
Confidence 899998677888887778899999852 222 2222221 12346789988874
Q ss_pred -EEE-EECCC-EEEEcC-CCcEEEE
Q psy8782 351 -LYF-ADGTN-IRMVDR-DGIVTTV 371 (482)
Q Consensus 351 -lyv-aD~~n-Ir~i~~-~G~i~ti 371 (482)
+++ +...+ ||+.|. .+++..+
T Consensus 271 ~~lasgs~D~~i~vwd~~~~~~~~~ 295 (344)
T 4gqb_B 271 PFLASLSEDCSLAVLDSSLSELFRS 295 (344)
T ss_dssp CCEEEEETTSCEEEECTTCCEEEEE
T ss_pred eEEEEEeCCCeEEEEECCCCcEEEE
Confidence 443 33333 888885 4555444
No 166
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.59 E-value=1.1 Score=48.43 Aligned_cols=192 Identities=11% Similarity=0.004 Sum_probs=102.3
Q ss_pred ceEEEEcCCCcEEE-EeC-CcEEEEcC-CCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCCCeE
Q psy8782 122 PVALATAPDGSLFV-GDF-NLIRRIMT-DGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKPRII 198 (482)
Q Consensus 122 P~glavd~~G~lyv-aD~-~~Irki~~-~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~~~i 198 (482)
...+++.|+|.+++ +.. +.|+.++. +|.......... .....+.+.+++..+.....++.+
T Consensus 58 v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~----------------~~v~~~~~s~~~~~l~~~~~dg~i 121 (814)
T 3mkq_A 58 VRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHP----------------DYIRSIAVHPTKPYVLSGSDDLTV 121 (814)
T ss_dssp EEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCS----------------SCEEEEEECSSSSEEEEEETTSEE
T ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCC----------------CCEEEEEEeCCCCEEEEEcCCCEE
Confidence 56788889887544 444 67777774 454433221100 113456666666666666666666
Q ss_pred EEEcCC-C-ccccCCCcCCCCCCCceeecCCccEEEEcC-CCCEEEEEC--CcEEEEcCC-CeEEEEEeeccCCCCceee
Q psy8782 199 KTTLGD-G-HQRPLDCKDCNGEAGPKQRLLAPVALATAP-DGSLFVGDF--NLIRRIMTD-GTVRTVVRLNVTRVAYRYH 272 (482)
Q Consensus 199 ~~~~g~-G-~~~~~~~~~~~g~~~~~~~l~~P~giavd~-~G~lyv~D~--~~I~~i~~~-G~v~~~~g~~~~~~~~p~g 272 (482)
..+.-. + ..... ....-.....+++.| ++.++++-. +.|+.++.. +........ ........
T Consensus 122 ~vw~~~~~~~~~~~----------~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~--~~~~~v~~ 189 (814)
T 3mkq_A 122 KLWNWENNWALEQT----------FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT--GQERGVNY 189 (814)
T ss_dssp EEEEGGGTSEEEEE----------EECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEEC--CCTTCCCE
T ss_pred EEEECCCCceEEEE----------EcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEec--CCCCCEEE
Confidence 655321 1 10000 001112356788888 675555444 678888743 332222211 11134567
Q ss_pred EEEeCC-CCeEEEEeCCCCEEEEEecCCccCCCCCcE-EEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCc
Q psy8782 273 IAYSPL-DGTLYISDPESHQILRVKNAMDFSAPDYNV-EPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNI 350 (482)
Q Consensus 273 iavd~~-~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~-~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~ 350 (482)
++++|. ++.++++-...+.|+.++. .++.. ..+.+. ......+++.++|.
T Consensus 190 ~~~~~~~~~~~l~~~~~dg~i~~~d~------~~~~~~~~~~~~----------------------~~~v~~~~~~~~~~ 241 (814)
T 3mkq_A 190 VDYYPLPDKPYMITASDDLTIKIWDY------QTKSCVATLEGH----------------------MSNVSFAVFHPTLP 241 (814)
T ss_dssp EEECCSTTCCEEEEECTTSEEEEEET------TTTEEEEEEECC----------------------SSCEEEEEECSSSS
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEEC------CCCcEEEEEcCC----------------------CCCEEEEEEcCCCC
Confidence 788762 4556666666788998885 23332 222210 12356788888887
Q ss_pred EEEEEC-CC-EEEEcC-CCcEE
Q psy8782 351 LYFADG-TN-IRMVDR-DGIVT 369 (482)
Q Consensus 351 lyvaD~-~n-Ir~i~~-~G~i~ 369 (482)
++++-+ .. |+..+. .+...
T Consensus 242 ~l~~~~~dg~v~vwd~~~~~~~ 263 (814)
T 3mkq_A 242 IIISGSEDGTLKIWNSSTYKVE 263 (814)
T ss_dssp EEEEEETTSCEEEEETTTCSEE
T ss_pred EEEEEeCCCeEEEEECCCCcEE
Confidence 555443 23 887775 34443
No 167
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=96.54 E-value=0.61 Score=44.81 Aligned_cols=190 Identities=9% Similarity=-0.009 Sum_probs=106.9
Q ss_pred CceEEEEcCCCcEEEEe-C-CcEEEEcC-CCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCCCe
Q psy8782 121 APVALATAPDGSLFVGD-F-NLIRRIMT-DGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKPRI 197 (482)
Q Consensus 121 ~P~glavd~~G~lyvaD-~-~~Irki~~-~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~~~ 197 (482)
....+++.++|.++++- . +.|+.++. +++.......... ......+.+.+++..++++..++.
T Consensus 54 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~--------------~~~v~~~~~~~~~~~l~~~~~d~~ 119 (372)
T 1k8k_C 54 QVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRI--------------NRAARCVRWAPNEKKFAVGSGSRV 119 (372)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCC--------------SSCEEEEEECTTSSEEEEEETTSS
T ss_pred cccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecC--------------CCceeEEEECCCCCEEEEEeCCCE
Confidence 45788899988866554 3 67777764 3443322211000 012356666777766776666655
Q ss_pred EEEEcC-CCcc--ccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC--CcEEEEcC-------------------C
Q psy8782 198 IKTTLG-DGHQ--RPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF--NLIRRIMT-------------------D 253 (482)
Q Consensus 198 i~~~~g-~G~~--~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~--~~I~~i~~-------------------~ 253 (482)
+..+.- .+.. .... . ....-.....+++.+++.++++-. +.|+.++. .
T Consensus 120 v~i~d~~~~~~~~~~~~--~------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~ 191 (372)
T 1k8k_C 120 ISICYFEQENDWWVCKH--I------KKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPF 191 (372)
T ss_dssp EEEEEEETTTTEEEEEE--E------CTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCT
T ss_pred EEEEEecCCCcceeeee--e------ecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccch
Confidence 554321 1110 0000 0 001123467899999987666554 78888873 3
Q ss_pred CeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcE-EEEecCCcccCCCCCCccCCCccc
Q psy8782 254 GTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNV-EPAVGSGERCLPGDEAHCGDGAPA 332 (482)
Q Consensus 254 G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~-~~vaG~g~~~~~g~~~~~gdg~~a 332 (482)
++....+. ..-.....++++| ++.++++-...+.|+.++.. ++.. ..+.+.
T Consensus 192 ~~~~~~~~---~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~------~~~~~~~~~~~------------------ 243 (372)
T 1k8k_C 192 GELMFESS---SSCGWVHGVCFSA-NGSRVAWVSHDSTVCLADAD------KKMAVATLASE------------------ 243 (372)
T ss_dssp TCEEEECC---CCSSCEEEEEECS-SSSEEEEEETTTEEEEEEGG------GTTEEEEEECS------------------
T ss_pred hhheEecC---CCCCeEEEEEECC-CCCEEEEEeCCCEEEEEECC------CCceeEEEccC------------------
Confidence 55444332 2233567899999 66666665567889999852 3332 222210
Q ss_pred cccccCCcceEEEeCCCcEEEEECCC-EEEEcC
Q psy8782 333 RDAKLAYPKGVAVSADNILYFADGTN-IRMVDR 364 (482)
Q Consensus 333 ~~a~l~~P~giavd~~G~lyvaD~~n-Ir~i~~ 364 (482)
-.....++++++|.++++-..+ |+..+.
T Consensus 244 ----~~~v~~~~~~~~~~~l~~~~d~~i~i~~~ 272 (372)
T 1k8k_C 244 ----TLPLLAVTFITESSLVAAGHDCFPVLFTY 272 (372)
T ss_dssp ----SCCEEEEEEEETTEEEEEETTSSCEEEEE
T ss_pred ----CCCeEEEEEecCCCEEEEEeCCeEEEEEc
Confidence 1235789999999877776555 776663
No 168
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=96.52 E-value=1.1 Score=47.82 Aligned_cols=151 Identities=15% Similarity=0.135 Sum_probs=87.5
Q ss_pred ceEEEecCCCeEEEEcCCCeEEEEc-CCCccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC--CcEEEEcCCC
Q psy8782 178 SGILQKGDGSNIYLKNKPRIIKTTL-GDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF--NLIRRIMTDG 254 (482)
Q Consensus 178 ~gi~~~~~g~~lyi~d~~~~i~~~~-g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~--~~I~~i~~~G 254 (482)
..+.+.+++..+.....++.|++.. .++..... ....-.....+++.++|..+++-. +.|+.++..+
T Consensus 434 ~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~----------~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~ 503 (694)
T 3dm0_A 434 EDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRR----------FVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLG 503 (694)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE----------EECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEECCCCcceeE----------EeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCC
Confidence 4556666666666666666666653 22322100 011122356889999987666555 7899998766
Q ss_pred eEEEEEee-ccCCCCceeeEEEeCCCC--eEEEEeCCCCEEEEEecCCccCCCCCcEE-EEecCCcccCCCCCCccCCCc
Q psy8782 255 TVRTVVRL-NVTRVAYRYHIAYSPLDG--TLYISDPESHQILRVKNAMDFSAPDYNVE-PAVGSGERCLPGDEAHCGDGA 330 (482)
Q Consensus 255 ~v~~~~g~-~~~~~~~p~giavd~~~g--~lyVaD~~n~~I~~~~~~~~~~~~~g~~~-~vaG~g~~~~~g~~~~~gdg~ 330 (482)
.....+.. ..........++++| ++ .+.++-...+.|+.++. .++... .+.+.
T Consensus 504 ~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~s~d~~v~vwd~------~~~~~~~~~~~h---------------- 560 (694)
T 3dm0_A 504 ECKYTISEGGEGHRDWVSCVRFSP-NTLQPTIVSASWDKTVKVWNL------SNCKLRSTLAGH---------------- 560 (694)
T ss_dssp CEEEEECSSTTSCSSCEEEEEECS-CSSSCEEEEEETTSCEEEEET------TTCCEEEEECCC----------------
T ss_pred CcceeeccCCCCCCCcEEEEEEeC-CCCcceEEEEeCCCeEEEEEC------CCCcEEEEEcCC----------------
Confidence 54333221 112223457889988 43 46666667788888885 233322 22211
Q ss_pred cccccccCCcceEEEeCCCcEEEEECC-C-EEEEcC-CCc
Q psy8782 331 PARDAKLAYPKGVAVSADNILYFADGT-N-IRMVDR-DGI 367 (482)
Q Consensus 331 ~a~~a~l~~P~giavd~~G~lyvaD~~-n-Ir~i~~-~G~ 367 (482)
-.....++++++|.++++-+. . ||..|. +|.
T Consensus 561 ------~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~ 594 (694)
T 3dm0_A 561 ------TGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK 594 (694)
T ss_dssp ------SSCEEEEEECTTSSEEEEEETTSBCEEEETTTTE
T ss_pred ------CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Confidence 123567899999987776543 3 888875 454
No 169
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=96.51 E-value=0.22 Score=49.18 Aligned_cols=201 Identities=9% Similarity=0.032 Sum_probs=112.2
Q ss_pred CCceEEEEcCCC-cEEEE-eC-CcEEEEcCC-CeEEEEEe-eCCCcccCCCccccccccccCCceEEEecCCCeEEEEcC
Q psy8782 120 LAPVALATAPDG-SLFVG-DF-NLIRRIMTD-GTVRTVVR-LKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNK 194 (482)
Q Consensus 120 ~~P~glavd~~G-~lyva-D~-~~Irki~~~-G~v~ti~g-~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~ 194 (482)
.....|++.|+| +++++ .. +.|+.++.. ++....+. .+. ......+.+.+++..++....
T Consensus 132 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~l~~~~~ 196 (402)
T 2aq5_A 132 KRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVH---------------PDTIYSVDWSRDGALICTSCR 196 (402)
T ss_dssp SCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTC---------------CSCEEEEEECTTSSCEEEEET
T ss_pred CeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCC---------------CCceEEEEECCCCCEEEEEec
Confidence 457789999997 55554 44 778888753 55443331 100 011245666666666666666
Q ss_pred CCeEEEEcC-CCccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEE---C--CcEEEEcCCC-eE-EEEEeeccCC
Q psy8782 195 PRIIKTTLG-DGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGD---F--NLIRRIMTDG-TV-RTVVRLNVTR 266 (482)
Q Consensus 195 ~~~i~~~~g-~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D---~--~~I~~i~~~G-~v-~~~~g~~~~~ 266 (482)
++.+..+.- +++....-. ....-..+..+++.++|.++++- . +.|+.++... .. ..... ...
T Consensus 197 d~~i~iwd~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~--~~~ 266 (402)
T 2aq5_A 197 DKRVRVIEPRKGTVVAEKD--------RPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQE--LDT 266 (402)
T ss_dssp TSEEEEEETTTTEEEEEEE--------CSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEE--CCC
T ss_pred CCcEEEEeCCCCceeeeec--------cCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEe--ccC
Confidence 666665542 222210000 00000135788899999877775 2 6788887543 21 12211 112
Q ss_pred CCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCc--EEEEecCCcccCCCCCCccCCCccccccccCCcceEE
Q psy8782 267 VAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYN--VEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVA 344 (482)
Q Consensus 267 ~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~--~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~gia 344 (482)
......++++|++..|+++....+.|+.++.. ++. +..+.+.. . -....+++
T Consensus 267 ~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~------~~~~~~~~l~~~~-----------~---------~~~v~~~~ 320 (402)
T 2aq5_A 267 SSGVLLPFFDPDTNIVYLCGKGDSSIRYFEIT------SEAPFLHYLSMFS-----------S---------KESQRGMG 320 (402)
T ss_dssp CSSCEEEEEETTTTEEEEEETTCSCEEEEEEC------SSTTCEEEEEEEC-----------C---------SSCCSEEE
T ss_pred CCceeEEEEcCCCCEEEEEEcCCCeEEEEEec------CCCcceEeecccc-----------c---------CCcccceE
Confidence 23467899999556788888778888888852 333 44433210 0 12467899
Q ss_pred EeCCCcEEEEECCCEEEEcC-CCcEEEE
Q psy8782 345 VSADNILYFADGTNIRMVDR-DGIVTTV 371 (482)
Q Consensus 345 vd~~G~lyvaD~~nIr~i~~-~G~i~ti 371 (482)
+.+++.+.++....+|..+. ++.+..+
T Consensus 321 ~sp~~~~~~s~~~~~~~~~l~~~~~~~i 348 (402)
T 2aq5_A 321 YMPKRGLEVNKCEIARFYKLHERKCEPI 348 (402)
T ss_dssp ECCGGGSCGGGTEEEEEEEEETTEEEEE
T ss_pred EecccccceecceeEEEEEcCCCcEEEE
Confidence 99988876654444665542 4544433
No 170
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=96.51 E-value=0.24 Score=48.72 Aligned_cols=157 Identities=13% Similarity=0.071 Sum_probs=84.0
Q ss_pred CceEEEecCCCeEEEEc--CCCeEEEEcC-CCccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC-CcEEEEc-
Q psy8782 177 PSGILQKGDGSNIYLKN--KPRIIKTTLG-DGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF-NLIRRIM- 251 (482)
Q Consensus 177 P~gi~~~~~g~~lyi~d--~~~~i~~~~g-~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~-~~I~~i~- 251 (482)
...+++.+||..+.++. .++.|+++.- +++... ....-....+|++.|||.++++-. +.+++++
T Consensus 136 ~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~-----------~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~ 204 (365)
T 4h5i_A 136 TKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKF-----------EIETRGEVKDLHFSTDGKVVAYITGSSLEVIST 204 (365)
T ss_dssp EEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEE-----------EEECSSCCCEEEECTTSSEEEEECSSCEEEEET
T ss_pred EEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEE-----------EeCCCCceEEEEEccCCceEEeccceeEEEEEe
Confidence 34677788887777764 3566666542 333211 001112356899999999887776 6777775
Q ss_pred CCCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeC-CCC---EEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccC
Q psy8782 252 TDGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDP-ESH---QILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCG 327 (482)
Q Consensus 252 ~~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~-~n~---~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~g 327 (482)
.+|......-. ...-.....++++| ++.++++-. .+. .++.++. ..+........
T Consensus 205 ~~~~~~~~~~~-~~~~~~v~~v~fsp-dg~~l~~~s~d~~~~~~i~~~~~------~~~~~~~~~~~------------- 263 (365)
T 4h5i_A 205 VTGSCIARKTD-FDKNWSLSKINFIA-DDTVLIAASLKKGKGIVLTKISI------KSGNTSVLRSK------------- 263 (365)
T ss_dssp TTCCEEEEECC-CCTTEEEEEEEEEE-TTEEEEEEEESSSCCEEEEEEEE------ETTEEEEEEEE-------------
T ss_pred ccCcceeeeec-CCCCCCEEEEEEcC-CCCEEEEEecCCcceeEEeeccc------ccceecceeee-------------
Confidence 45554332111 11112356789999 665555432 221 4555553 12222111100
Q ss_pred CCccccccccCCcceEEEeCCCcEEEEE-CCC-EEEEcC-CCcEE
Q psy8782 328 DGAPARDAKLAYPKGVAVSADNILYFAD-GTN-IRMVDR-DGIVT 369 (482)
Q Consensus 328 dg~~a~~a~l~~P~giavd~~G~lyvaD-~~n-Ir~i~~-~G~i~ 369 (482)
...........|++.|+|.++++- ..+ ||+.|. +|...
T Consensus 264 ----~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~ 304 (365)
T 4h5i_A 264 ----QVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMS 304 (365)
T ss_dssp ----EEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEE
T ss_pred ----eecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEE
Confidence 000112234678999999876654 333 999985 56643
No 171
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=96.49 E-value=0.79 Score=45.62 Aligned_cols=148 Identities=14% Similarity=-0.004 Sum_probs=86.7
Q ss_pred CCceEEEEcCCCcEEEEeC--CcEEEEcCC-CeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCCC
Q psy8782 120 LAPVALATAPDGSLFVGDF--NLIRRIMTD-GTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKPR 196 (482)
Q Consensus 120 ~~P~glavd~~G~lyvaD~--~~Irki~~~-G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~~ 196 (482)
.....+++.|++.++++-. +.|+.++.+ |.....+.... ..-..+.+.+++..+..+..++
T Consensus 109 ~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~----------------~~V~~v~~~~~~~~l~sgs~D~ 172 (410)
T 1vyh_C 109 SPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHT----------------DSVQDISFDHSGKLLASCSADM 172 (410)
T ss_dssp SCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCS----------------SCEEEEEECTTSSEEEEEETTS
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccC----------------CcEEEEEEcCCCCEEEEEeCCC
Confidence 3567889999998777655 788888753 44332221100 0124566666665555555555
Q ss_pred eEEEEcCC-CccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC--CcEEEEcC-CCeEEEEEeeccCCCCceee
Q psy8782 197 IIKTTLGD-GHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF--NLIRRIMT-DGTVRTVVRLNVTRVAYRYH 272 (482)
Q Consensus 197 ~i~~~~g~-G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~--~~I~~i~~-~G~v~~~~g~~~~~~~~p~g 272 (482)
.|+.+.-. +..... ....-.....+++.|+|..+++-. +.|+.++. .|.....+.. .-.....
T Consensus 173 ~i~iwd~~~~~~~~~----------~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~---h~~~v~~ 239 (410)
T 1vyh_C 173 TIKLWDFQGFECIRT----------MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTG---HREWVRM 239 (410)
T ss_dssp CCCEEETTSSCEEEC----------CCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEEC---CSSCEEE
T ss_pred eEEEEeCCCCceeEE----------EcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeC---CCccEEE
Confidence 55554322 111100 011112356789999997666555 67888884 5654443321 2234567
Q ss_pred EEEeCCCCeEEEEeCCCCEEEEEec
Q psy8782 273 IAYSPLDGTLYISDPESHQILRVKN 297 (482)
Q Consensus 273 iavd~~~g~lyVaD~~n~~I~~~~~ 297 (482)
+++++ ++.++++-...+.|+.++.
T Consensus 240 ~~~~~-~g~~l~s~s~D~~v~vwd~ 263 (410)
T 1vyh_C 240 VRPNQ-DGTLIASCSNDQTVRVWVV 263 (410)
T ss_dssp EEECT-TSSEEEEEETTSCEEEEET
T ss_pred EEECC-CCCEEEEEcCCCeEEEEEC
Confidence 88888 7877777777788888885
No 172
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=96.33 E-value=0.53 Score=50.63 Aligned_cols=155 Identities=12% Similarity=-0.021 Sum_probs=80.3
Q ss_pred CCceEEEEcCCCc-EEEEeC--C-----cEEEEcCC-CeEEEEEeeCCCc-----ccCCCcccc-cccc--ccCCceEEE
Q psy8782 120 LAPVALATAPDGS-LFVGDF--N-----LIRRIMTD-GTVRTVVRLKNQK-----FEKFPKILT-SCFL--SLSPSGILQ 182 (482)
Q Consensus 120 ~~P~glavd~~G~-lyvaD~--~-----~Irki~~~-G~v~ti~g~g~~~-----~~~~~~~~~-~~~~--~~~P~gi~~ 182 (482)
..+..+++.|||. |+++.. . .|+.++.+ |+...+....... .+....... ...+ ......+.+
T Consensus 37 ~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 116 (741)
T 2ecf_A 37 PTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQW 116 (741)
T ss_dssp CCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEE
T ss_pred CCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEE
Confidence 3688999999998 555543 3 68888864 6655544221100 000000000 0000 011345677
Q ss_pred ecCCCeEEEEcCCCeEEEEc-CCC---ccccCCCcCCCCCCCceeecCCccEEEEcCCCC-EEEEECCcEEEEcCCC-eE
Q psy8782 183 KGDGSNIYLKNKPRIIKTTL-GDG---HQRPLDCKDCNGEAGPKQRLLAPVALATAPDGS-LFVGDFNLIRRIMTDG-TV 256 (482)
Q Consensus 183 ~~~g~~lyi~d~~~~i~~~~-g~G---~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~-lyv~D~~~I~~i~~~G-~v 256 (482)
++|+..|+++.. +.+..+. .++ ..... ...-..+..+++.|||. |.++..+.|+.++.++ +.
T Consensus 117 SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l-----------~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~ 184 (741)
T 2ecf_A 117 SPDAQRLLFPLG-GELYLYDLKQEGKAAVRQL-----------THGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQ 184 (741)
T ss_dssp CTTSSEEEEEET-TEEEEEESSSCSTTSCCBC-----------CCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEE
T ss_pred CCCCCEEEEEeC-CcEEEEECCCCCcceEEEc-----------ccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCE
Confidence 777777766654 4444443 233 21111 01112467889999997 5555557899998654 44
Q ss_pred EEEEeeccC-------------CCCceeeEEEeCCCCeEEEEe
Q psy8782 257 RTVVRLNVT-------------RVAYRYHIAYSPLDGTLYISD 286 (482)
Q Consensus 257 ~~~~g~~~~-------------~~~~p~giavd~~~g~lyVaD 286 (482)
..+...+.. .+..+..++++|++..|+++.
T Consensus 185 ~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~ 227 (741)
T 2ecf_A 185 MQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYAR 227 (741)
T ss_dssp EECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEE
T ss_pred EEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEE
Confidence 433211111 011257899999445677764
No 173
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.32 E-value=2.2 Score=48.82 Aligned_cols=200 Identities=13% Similarity=0.005 Sum_probs=105.3
Q ss_pred CCceEEEEcCCCcEEEEeC--CcEEEEcC-CCeEE-EEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCC
Q psy8782 120 LAPVALATAPDGSLFVGDF--NLIRRIMT-DGTVR-TVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKP 195 (482)
Q Consensus 120 ~~P~glavd~~G~lyvaD~--~~Irki~~-~G~v~-ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~ 195 (482)
....++++.++|.+.++-. +.|+.++. ++... ++-+.. .....+.+.+++..+..+..+
T Consensus 616 ~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~-----------------~~v~~~~~s~~~~~l~s~~~d 678 (1249)
T 3sfz_A 616 DAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHE-----------------DEVLCCAFSSDDSYIATCSAD 678 (1249)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCS-----------------SCEEEEEECTTSSEEEEEETT
T ss_pred ccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCC-----------------CCEEEEEEecCCCEEEEEeCC
Confidence 4567889999998766543 77888775 35433 322110 112456666666666666666
Q ss_pred CeEEEEcC-CCccccCCCcCCCCCCCceeecCCccEEEEcCC--CCEEEEEC--CcEEEEcC-CCeEEEEEeeccCCCCc
Q psy8782 196 RIIKTTLG-DGHQRPLDCKDCNGEAGPKQRLLAPVALATAPD--GSLFVGDF--NLIRRIMT-DGTVRTVVRLNVTRVAY 269 (482)
Q Consensus 196 ~~i~~~~g-~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~--G~lyv~D~--~~I~~i~~-~G~v~~~~g~~~~~~~~ 269 (482)
+.+..+.- +++.... ....-.....+++.++ +.++++-. +.|+.++. +++....+. .....
T Consensus 679 ~~v~vwd~~~~~~~~~----------~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~---~h~~~ 745 (1249)
T 3sfz_A 679 KKVKIWDSATGKLVHT----------YDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMF---GHTNS 745 (1249)
T ss_dssp SEEEEEETTTCCEEEE----------EECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEEC---CCSSC
T ss_pred CeEEEEECCCCceEEE----------EcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheec---CCCCC
Confidence 65655532 2322100 0011123456777774 44555444 67888874 455444332 22335
Q ss_pred eeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCC
Q psy8782 270 RYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADN 349 (482)
Q Consensus 270 p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G 349 (482)
...++++| ++.+.++-...+.|+.++.. ++......-.... ......+ ....-.....+++.++|
T Consensus 746 v~~~~~sp-~~~~l~s~s~dg~v~vwd~~------~~~~~~~~~~~~~-------~~~~~~~-~~~~~~~v~~~~~s~dg 810 (1249)
T 3sfz_A 746 VNHCRFSP-DDELLASCSADGTLRLWDVR------SANERKSINVKRF-------FLSSEDP-PEDVEVIVKCCSWSADG 810 (1249)
T ss_dssp EEEEEECS-STTEEEEEESSSEEEEEEGG------GTEEEEEEECCCC-------C---------CCCCCBCCCCBCTTS
T ss_pred EEEEEEec-CCCEEEEEECCCeEEEEeCC------CCcccceeccccc-------ccccCCc-cccccceEEEEEECCCC
Confidence 67899999 77777776777889988852 3332211111000 0000000 01112245667888888
Q ss_pred cEEEEECCC-EEEEcC
Q psy8782 350 ILYFADGTN-IRMVDR 364 (482)
Q Consensus 350 ~lyvaD~~n-Ir~i~~ 364 (482)
...++-..+ ++.++.
T Consensus 811 ~~l~~~~~~~v~~~d~ 826 (1249)
T 3sfz_A 811 DKIIVAAKNKVLLFDI 826 (1249)
T ss_dssp SEEEEEETTEEEEEET
T ss_pred CEEEEEcCCcEEEEEe
Confidence 766655544 777764
No 174
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=96.32 E-value=0.78 Score=43.70 Aligned_cols=156 Identities=11% Similarity=0.017 Sum_probs=85.0
Q ss_pred CceEEEEcCCCcEEEEe-C-CcEEEEcC-CCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCC--
Q psy8782 121 APVALATAPDGSLFVGD-F-NLIRRIMT-DGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKP-- 195 (482)
Q Consensus 121 ~P~glavd~~G~lyvaD-~-~~Irki~~-~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~-- 195 (482)
....+++.++|+++++- . +.|+.++. +++........ .....+.+.+++..++....+
T Consensus 76 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----------------~~v~~~~~~~~~~~l~~~~~~~~ 138 (369)
T 3zwl_B 76 TIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSP-----------------VPVKRVEFSPCGNYFLAILDNVM 138 (369)
T ss_dssp CEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECS-----------------SCEEEEEECTTSSEEEEEECCBT
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecC-----------------CCeEEEEEccCCCEEEEecCCcc
Confidence 45778899988866554 3 67888875 35544433211 123556666666666665444
Q ss_pred ---CeEEEEcCCCccccCCCcCCCCCCC--ce--eecCCccEEEEcCCCCEEEE-EC-CcEEEEcCC--CeEEEEEeecc
Q psy8782 196 ---RIIKTTLGDGHQRPLDCKDCNGEAG--PK--QRLLAPVALATAPDGSLFVG-DF-NLIRRIMTD--GTVRTVVRLNV 264 (482)
Q Consensus 196 ---~~i~~~~g~G~~~~~~~~~~~g~~~--~~--~~l~~P~giavd~~G~lyv~-D~-~~I~~i~~~--G~v~~~~g~~~ 264 (482)
+.+..+.-................. .. ........+++.++|.++++ .. +.|+.++.. +.....+..
T Consensus 139 ~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-- 216 (369)
T 3zwl_B 139 KNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDL-- 216 (369)
T ss_dssp TBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEEC--
T ss_pred CCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEec--
Confidence 5544432110000000000000000 00 01125678889998865554 44 788888855 455544432
Q ss_pred CCCCceeeEEEeCCCCeEEEEeCCCCEEEEEec
Q psy8782 265 TRVAYRYHIAYSPLDGTLYISDPESHQILRVKN 297 (482)
Q Consensus 265 ~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~ 297 (482)
.-.....++++| ++.++++-...+.|+.++.
T Consensus 217 -~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~ 247 (369)
T 3zwl_B 217 -HEKSISDMQFSP-DLTYFITSSRDTNSFLVDV 247 (369)
T ss_dssp -CSSCEEEEEECT-TSSEEEEEETTSEEEEEET
T ss_pred -CCCceeEEEECC-CCCEEEEecCCceEEEEEC
Confidence 223467899999 6766666666788999985
No 175
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=96.32 E-value=0.38 Score=46.60 Aligned_cols=190 Identities=13% Similarity=0.027 Sum_probs=100.0
Q ss_pred ceEEEEcCCCcEEEEeC--CcEEEEcCC-CeEE--EEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCCC
Q psy8782 122 PVALATAPDGSLFVGDF--NLIRRIMTD-GTVR--TVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKPR 196 (482)
Q Consensus 122 P~glavd~~G~lyvaD~--~~Irki~~~-G~v~--ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~~ 196 (482)
...|++.|+|.++++-. +.|+..+.+ +... .....+-. ..-..+.+.+++..|..+..++
T Consensus 19 v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~---------------~~v~~~~~sp~g~~l~s~s~D~ 83 (345)
T 3fm0_A 19 CWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQ---------------RTVRKVAWSPCGNYLASASFDA 83 (345)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCS---------------SCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccC---------------CcEEEEEECCCCCEEEEEECCC
Confidence 46789999998776554 677777654 3321 11111100 0124566666666666665555
Q ss_pred eEEEEcC-CCccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC--CcEEEEcCC-C-eE--EEEEeeccCCCCc
Q psy8782 197 IIKTTLG-DGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF--NLIRRIMTD-G-TV--RTVVRLNVTRVAY 269 (482)
Q Consensus 197 ~i~~~~g-~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~--~~I~~i~~~-G-~v--~~~~g~~~~~~~~ 269 (482)
.+....- .+...... . ....-.....+++.|+|+++++-. +.|+.++.+ + .. ...+ ......
T Consensus 84 ~v~iw~~~~~~~~~~~--~------~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~---~~h~~~ 152 (345)
T 3fm0_A 84 TTCIWKKNQDDFECVT--T------LEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVL---NSHTQD 152 (345)
T ss_dssp CEEEEEECCC-EEEEE--E------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEE---CCCCSC
T ss_pred cEEEEEccCCCeEEEE--E------ccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEe---cCcCCC
Confidence 5554421 11110000 0 001112456899999998777665 677777643 2 22 2222 122234
Q ss_pred eeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCC
Q psy8782 270 RYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADN 349 (482)
Q Consensus 270 p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G 349 (482)
...++++| ++.++++-...+.|+.++. ..+....+.- ..+ .-.....|+++++|
T Consensus 153 v~~~~~~p-~~~~l~s~s~d~~i~~w~~------~~~~~~~~~~-----------~~~--------h~~~v~~l~~sp~g 206 (345)
T 3fm0_A 153 VKHVVWHP-SQELLASASYDDTVKLYRE------EEDDWVCCAT-----------LEG--------HESTVWSLAFDPSG 206 (345)
T ss_dssp EEEEEECS-SSSCEEEEETTSCEEEEEE------ETTEEEEEEE-----------ECC--------CSSCEEEEEECTTS
T ss_pred eEEEEECC-CCCEEEEEeCCCcEEEEEe------cCCCEEEEEE-----------ecC--------CCCceEEEEECCCC
Confidence 57889999 6766666666677777763 1232221110 000 11235789999999
Q ss_pred cEEEEEC-CC-EEEEc
Q psy8782 350 ILYFADG-TN-IRMVD 363 (482)
Q Consensus 350 ~lyvaD~-~n-Ir~i~ 363 (482)
.++++-+ .. ||+.+
T Consensus 207 ~~l~s~s~D~~v~iW~ 222 (345)
T 3fm0_A 207 QRLASCSDDRTVRIWR 222 (345)
T ss_dssp SEEEEEETTSCEEEEE
T ss_pred CEEEEEeCCCeEEEec
Confidence 8666543 33 66654
No 176
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=96.27 E-value=0.83 Score=43.52 Aligned_cols=105 Identities=10% Similarity=0.025 Sum_probs=59.9
Q ss_pred ceEEEecCCCeEEEEcCCCeEEEEc-CCCccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC--CcEEEEcC-C
Q psy8782 178 SGILQKGDGSNIYLKNKPRIIKTTL-GDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF--NLIRRIMT-D 253 (482)
Q Consensus 178 ~gi~~~~~g~~lyi~d~~~~i~~~~-g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~--~~I~~i~~-~ 253 (482)
..+.+.+++..++.+..++.+.++. .+++.... ....-.....+++.+++.++++-. +.|+.++. +
T Consensus 36 ~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~----------~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 105 (369)
T 3zwl_B 36 TQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGT----------LDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSN 105 (369)
T ss_dssp EEEEECTTSCEEEEEESSSCEEEEETTTCCEEEE----------ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT
T ss_pred EEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhh----------hhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 3445555555555555555555543 22221100 001112356889999887665554 67888884 5
Q ss_pred CeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCC-----CEEEEEec
Q psy8782 254 GTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPES-----HQILRVKN 297 (482)
Q Consensus 254 G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n-----~~I~~~~~ 297 (482)
++....+. .......++++| ++..+++-..+ +.|+.++.
T Consensus 106 ~~~~~~~~----~~~~v~~~~~~~-~~~~l~~~~~~~~~~~g~i~~~d~ 149 (369)
T 3zwl_B 106 GQCVATWK----SPVPVKRVEFSP-CGNYFLAILDNVMKNPGSINIYEI 149 (369)
T ss_dssp CCEEEEEE----CSSCEEEEEECT-TSSEEEEEECCBTTBCCEEEEEEE
T ss_pred CcEEEEee----cCCCeEEEEEcc-CCCEEEEecCCccCCCCEEEEEEe
Confidence 66655543 223578899999 66555554444 77877774
No 177
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=96.25 E-value=0.98 Score=44.14 Aligned_cols=219 Identities=11% Similarity=-0.000 Sum_probs=114.4
Q ss_pred CceEEEEcCCCcEEEE-eC-CcEEEEcCCC------eEEEEEeeCCCcccCCCccccccccccCCceEEEecC-CCeEEE
Q psy8782 121 APVALATAPDGSLFVG-DF-NLIRRIMTDG------TVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGD-GSNIYL 191 (482)
Q Consensus 121 ~P~glavd~~G~lyva-D~-~~Irki~~~G------~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~-g~~lyi 191 (482)
....+++.++|.++++ .. +.|+.++.+. .+.++.+. ......+.+.++ +..++.
T Consensus 69 ~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h-----------------~~~v~~~~~~~~~~~~l~s 131 (416)
T 2pm9_A 69 KFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNH-----------------SSSVKTVKFNAKQDNVLAS 131 (416)
T ss_dssp CEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCS-----------------SSCCCEEEECSSSTTBEEE
T ss_pred ceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCC-----------------ccceEEEEEcCCCCCEEEE
Confidence 4678899999885554 44 6788776543 22222211 012356677776 445555
Q ss_pred EcCCCeEEEEcCCCcc------ccCCCcCCCCCCCceeecCCccEEEEcCC-CCEEEEEC--CcEEEEcC-CCeEEEEEe
Q psy8782 192 KNKPRIIKTTLGDGHQ------RPLDCKDCNGEAGPKQRLLAPVALATAPD-GSLFVGDF--NLIRRIMT-DGTVRTVVR 261 (482)
Q Consensus 192 ~d~~~~i~~~~g~G~~------~~~~~~~~~g~~~~~~~l~~P~giavd~~-G~lyv~D~--~~I~~i~~-~G~v~~~~g 261 (482)
...++.+..+.-.... ..... ......-.....+++.++ +.++++-. +.|+.++. .++....+.
T Consensus 132 ~~~dg~v~iwd~~~~~~~~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 205 (416)
T 2pm9_A 132 GGNNGEIFIWDMNKCTESPSNYTPLTP------GQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLS 205 (416)
T ss_dssp ECSSSCEEBCBTTTTSSCTTTCCCBCC------CCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEEC
T ss_pred EcCCCeEEEEECCCCcccccccccccc------ccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEe
Confidence 5556666554322111 00000 001112234678999998 67777655 78999985 455544443
Q ss_pred eccCC---CCceeeEEEeCCCCeEEEEeCCCC---EEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCcccccc
Q psy8782 262 LNVTR---VAYRYHIAYSPLDGTLYISDPESH---QILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDA 335 (482)
Q Consensus 262 ~~~~~---~~~p~giavd~~~g~lyVaD~~n~---~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a 335 (482)
..... -.....++++|.+..++++-...+ .|+.++.. ++. .... ... ..
T Consensus 206 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~------~~~------~~~~------~~~-------~~ 260 (416)
T 2pm9_A 206 YTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLR------NAN------TPLQ------TLN-------QG 260 (416)
T ss_dssp CCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETT------STT------SCSB------CCC-------SC
T ss_pred ccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCC------CCC------CCcE------Eee-------cC
Confidence 21100 345788999994445666655555 88888742 110 0000 000 01
Q ss_pred ccCCcceEEEeC-CCcEEEEEC-CC-EEEEcC-CCc-EEEEEcCCCCCCCCCcCCCCc
Q psy8782 336 KLAYPKGVAVSA-DNILYFADG-TN-IRMVDR-DGI-VTTVIGNHMHKSHWKPIPCEG 388 (482)
Q Consensus 336 ~l~~P~giavd~-~G~lyvaD~-~n-Ir~i~~-~G~-i~ti~G~~~~~~~~~~~~~dg 388 (482)
.-.....+++.+ ++.++++-. .+ |+..+. ++. +.++.+.... -....+.+++
T Consensus 261 ~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~-v~~~~~s~~~ 317 (416)
T 2pm9_A 261 HQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNW-CFKTKFAPEA 317 (416)
T ss_dssp CSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSC-CCCEEECTTC
T ss_pred ccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCc-eEEEEECCCC
Confidence 123467889988 776555443 34 888884 454 3444332221 1223445555
No 178
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=96.22 E-value=1 Score=43.98 Aligned_cols=126 Identities=11% Similarity=0.138 Sum_probs=75.4
Q ss_pred CCCEEEEEC-CcEEEEcC-CCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEec
Q psy8782 236 DGSLFVGDF-NLIRRIMT-DGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVG 313 (482)
Q Consensus 236 ~G~lyv~D~-~~I~~i~~-~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG 313 (482)
++.||++.. +.++.+++ +|++.-... ...+..++++ ++.||++.. .+.|+.++. .+|......-
T Consensus 239 ~~~v~~~~~~g~l~~~d~~tG~~~w~~~-----~~~~~~~~~~--~~~l~~~~~-~g~l~~~d~------~tG~~~w~~~ 304 (376)
T 3q7m_A 239 NGVVFALAYNGNLTALDLRSGQIMWKRE-----LGSVNDFIVD--GNRIYLVDQ-NDRVMALTI------DGGVTLWTQS 304 (376)
T ss_dssp TTEEEEECTTSCEEEEETTTCCEEEEEC-----CCCEEEEEEE--TTEEEEEET-TCCEEEEET------TTCCEEEEEC
T ss_pred CCEEEEEecCcEEEEEECCCCcEEeecc-----CCCCCCceEE--CCEEEEEcC-CCeEEEEEC------CCCcEEEeec
Confidence 588999887 78999986 687654322 2334566665 789999985 567999985 4566443221
Q ss_pred CCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEECCC-EEEEcC-CCcEEEEEcCCCCCCCCCcCCCCceEE
Q psy8782 314 SGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADGTN-IRMVDR-DGIVTTVIGNHMHKSHWKPIPCEGTLN 391 (482)
Q Consensus 314 ~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~~n-Ir~i~~-~G~i~ti~G~~~~~~~~~~~~~dg~l~ 391 (482)
.. . ...+.. .++. ++.||+.+... +..+|+ +|++..............++..++.||
T Consensus 305 ~~------------~-----~~~~~~---~~~~-~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~~~~l~ 363 (376)
T 3q7m_A 305 DL------------L-----HRLLTS---PVLY-NGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAADGKLL 363 (376)
T ss_dssp TT------------T-----TSCCCC---CEEE-TTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEEETTEEE
T ss_pred cc------------C-----CCcccC---CEEE-CCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEEECCEEE
Confidence 00 0 001222 2333 68899998765 999984 788754443321111123444567777
Q ss_pred ecccc
Q psy8782 392 IEEVS 396 (482)
Q Consensus 392 v~~~~ 396 (482)
+....
T Consensus 364 v~~~~ 368 (376)
T 3q7m_A 364 IQAKD 368 (376)
T ss_dssp EEBTT
T ss_pred EEeCC
Confidence 75543
No 179
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=96.22 E-value=0.9 Score=43.37 Aligned_cols=146 Identities=12% Similarity=0.116 Sum_probs=83.9
Q ss_pred ceEEEecCCCeEEEEcCCCeEEEEc-CCCccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC--CcEEEEcCCC
Q psy8782 178 SGILQKGDGSNIYLKNKPRIIKTTL-GDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF--NLIRRIMTDG 254 (482)
Q Consensus 178 ~gi~~~~~g~~lyi~d~~~~i~~~~-g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~--~~I~~i~~~G 254 (482)
..+.+.+++..+..+..++.++... .+++.... ....-.....+++.+++.++++-. +.|+.++..+
T Consensus 69 ~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~----------~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~ 138 (319)
T 3frx_A 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQR----------FVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG 138 (319)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE----------EECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEE----------EccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 3456666666666666666666654 23332100 011122456789999998777665 7899999877
Q ss_pred eEEEEEeeccCCCCceeeEEEeCC-----CCeEEEEeCCCCEEEEEecCCccCCCCCcEEE-EecCCcccCCCCCCccCC
Q psy8782 255 TVRTVVRLNVTRVAYRYHIAYSPL-----DGTLYISDPESHQILRVKNAMDFSAPDYNVEP-AVGSGERCLPGDEAHCGD 328 (482)
Q Consensus 255 ~v~~~~g~~~~~~~~p~giavd~~-----~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~-vaG~g~~~~~g~~~~~gd 328 (482)
.....+. ........+++.|. ++.++++-...+.|+.++. ..+.... +.|.
T Consensus 139 ~~~~~~~---~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~------~~~~~~~~~~~h-------------- 195 (319)
T 3frx_A 139 QCLATLL---GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL------NQFQIEADFIGH-------------- 195 (319)
T ss_dssp CEEEEEC---CCSSCEEEEEECCC------CCEEEEEETTSCEEEEET------TTTEEEEEECCC--------------
T ss_pred CeEEEEe---ccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEEC------CcchhheeecCC--------------
Confidence 6544332 12233456777662 2346666666788888885 2333221 1110
Q ss_pred CccccccccCCcceEEEeCCCcEEEEEC-CC-EEEEcC
Q psy8782 329 GAPARDAKLAYPKGVAVSADNILYFADG-TN-IRMVDR 364 (482)
Q Consensus 329 g~~a~~a~l~~P~giavd~~G~lyvaD~-~n-Ir~i~~ 364 (482)
-.....+++.++|.++++-+ .. ||..|.
T Consensus 196 --------~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~ 225 (319)
T 3frx_A 196 --------NSNINTLTASPDGTLIASAGKDGEIMLWNL 225 (319)
T ss_dssp --------CSCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred --------CCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 12346789999998666544 33 888875
No 180
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=96.18 E-value=1.1 Score=44.13 Aligned_cols=208 Identities=13% Similarity=0.089 Sum_probs=109.9
Q ss_pred ceEEEEcCCCcEEEEeC-CcEEEEcC-CCeEEEEEeeCCCcccCCCc-cccccc--cccCCceEEEecCCCeEEEEcCCC
Q psy8782 122 PVALATAPDGSLFVGDF-NLIRRIMT-DGTVRTVVRLKNQKFEKFPK-ILTSCF--LSLSPSGILQKGDGSNIYLKNKPR 196 (482)
Q Consensus 122 P~glavd~~G~lyvaD~-~~Irki~~-~G~v~ti~g~g~~~~~~~~~-~~~~~~--~~~~P~gi~~~~~g~~lyi~d~~~ 196 (482)
...+++.|+|.++++-. ..++.++. +|.....+....... .+.. ...... -...-..+.+.+++..+..+..++
T Consensus 67 V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~ 145 (393)
T 1erj_A 67 VCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAAN-KDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDR 145 (393)
T ss_dssp CCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEECCCCCEEEEEcCCcEEEEEecCCCEEEEecCccccc-cccccccccccCCCceeEEEEEECCCCCEEEEEcCCC
Confidence 45788999999777655 66766653 455443321110000 0000 000000 000123566777776666666666
Q ss_pred eEEEEcC-CCccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC--CcEEEEcC-CCeEEEEEeeccCCCCceee
Q psy8782 197 IIKTTLG-DGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF--NLIRRIMT-DGTVRTVVRLNVTRVAYRYH 272 (482)
Q Consensus 197 ~i~~~~g-~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~--~~I~~i~~-~G~v~~~~g~~~~~~~~p~g 272 (482)
.|..+.- +++.... ....-.....+++.|+|..+++-. +.|+.++. +++....+.. -.....
T Consensus 146 ~i~iwd~~~~~~~~~----------~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~----~~~v~~ 211 (393)
T 1erj_A 146 LIRIWDIENRKIVMI----------LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI----EDGVTT 211 (393)
T ss_dssp CEEEEETTTTEEEEE----------ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC----SSCEEE
T ss_pred eEEEEECCCCcEEEE----------EccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEc----CCCcEE
Confidence 6666542 2221100 011112356889999997666655 68888884 5655444332 124567
Q ss_pred EEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEE
Q psy8782 273 IAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILY 352 (482)
Q Consensus 273 iavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~ly 352 (482)
++++|.++.++++-...+.|+.++. .++........... ... ..-.....++++++|.++
T Consensus 212 ~~~~~~~~~~l~~~s~d~~v~iwd~------~~~~~~~~~~~~~~--------~~~------~h~~~v~~v~~~~~g~~l 271 (393)
T 1erj_A 212 VAVSPGDGKYIAAGSLDRAVRVWDS------ETGFLVERLDSENE--------SGT------GHKDSVYSVVFTRDGQSV 271 (393)
T ss_dssp EEECSTTCCEEEEEETTSCEEEEET------TTCCEEEEEC--------------C------CCSSCEEEEEECTTSSEE
T ss_pred EEEECCCCCEEEEEcCCCcEEEEEC------CCCcEEEeeccccc--------CCC------CCCCCEEEEEECCCCCEE
Confidence 8898867777777777888988885 23432222110000 000 112345679999998866
Q ss_pred EEEC-CC-EEEEcC
Q psy8782 353 FADG-TN-IRMVDR 364 (482)
Q Consensus 353 vaD~-~n-Ir~i~~ 364 (482)
++-+ .+ |+..+.
T Consensus 272 ~s~s~d~~v~~wd~ 285 (393)
T 1erj_A 272 VSGSLDRSVKLWNL 285 (393)
T ss_dssp EEEETTSEEEEEEC
T ss_pred EEEeCCCEEEEEEC
Confidence 5544 33 777764
No 181
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=96.18 E-value=0.82 Score=42.54 Aligned_cols=110 Identities=15% Similarity=0.138 Sum_probs=65.7
Q ss_pred ccEEEEcC-CCCEEEEEC--CcEEEEcCCCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCC
Q psy8782 228 PVALATAP-DGSLFVGDF--NLIRRIMTDGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAP 304 (482)
Q Consensus 228 P~giavd~-~G~lyv~D~--~~I~~i~~~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~ 304 (482)
...+++.+ +++++++-. +.|+.++....+..+. .........++++| ++. +++-...+.|+.++. .
T Consensus 145 v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~---~~~~~~i~~~~~~~-~~~-~~~~~~dg~i~i~d~------~ 213 (313)
T 3odt_A 145 VWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFS---GIHNDVVRHLAVVD-DGH-FISCSNDGLIKLVDM------H 213 (313)
T ss_dssp EEEEEEEETTTTEEEEEETTSCEEEEETTEEEEEEC---SSCSSCEEEEEEEE-TTE-EEEEETTSEEEEEET------T
T ss_pred eeEEEEccCCCCEEEEEECCCCEEEEecCceEEEEe---ccCcccEEEEEEcC-CCe-EEEccCCCeEEEEEC------C
Confidence 44566655 565444443 6788887433333322 11234567899998 777 555556788999985 2
Q ss_pred CCcEE-EEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEECCC-EEEEcC-CCcEEE
Q psy8782 305 DYNVE-PAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADGTN-IRMVDR-DGIVTT 370 (482)
Q Consensus 305 ~g~~~-~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~~n-Ir~i~~-~G~i~t 370 (482)
++... .+.+. -.....+++.++|.|+.+...+ |+..+. ++....
T Consensus 214 ~~~~~~~~~~~----------------------~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~ 260 (313)
T 3odt_A 214 TGDVLRTYEGH----------------------ESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQ 260 (313)
T ss_dssp TCCEEEEEECC----------------------SSCEEEEEECTTSCEEEEETTSEEEEECTTTCCEEE
T ss_pred chhhhhhhhcC----------------------CceEEEEEEecCCCEEEEecCCEEEEEECCCCceeE
Confidence 34322 22210 1235689999999877777666 888884 555433
No 182
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=96.17 E-value=0.94 Score=44.54 Aligned_cols=201 Identities=12% Similarity=0.026 Sum_probs=106.5
Q ss_pred CceEEEEcC-CCcEEEEeC--CcEEEEcCC-Ce--------EEEEEeeCCCcccCCCccccccccccCCceEEEecCCC-
Q psy8782 121 APVALATAP-DGSLFVGDF--NLIRRIMTD-GT--------VRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGS- 187 (482)
Q Consensus 121 ~P~glavd~-~G~lyvaD~--~~Irki~~~-G~--------v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~- 187 (482)
...++++.+ +++++++-. +.|+.++.+ +. +.++.+.. .....+.+.+++.
T Consensus 83 ~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~-----------------~~v~~~~~~p~~~~ 145 (402)
T 2aq5_A 83 PVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHT-----------------KRVGIVAWHPTAQN 145 (402)
T ss_dssp CEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCS-----------------SCEEEEEECSSBTT
T ss_pred CEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCC-----------------CeEEEEEECcCCCC
Confidence 467899999 787666544 667777643 21 22222110 1124555566653
Q ss_pred eEEEEcCCCeEEEEc-CCCccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEE-EC-CcEEEEcC-CCeEEEEEeec
Q psy8782 188 NIYLKNKPRIIKTTL-GDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVG-DF-NLIRRIMT-DGTVRTVVRLN 263 (482)
Q Consensus 188 ~lyi~d~~~~i~~~~-g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~-D~-~~I~~i~~-~G~v~~~~g~~ 263 (482)
.++.+..++.+..+. .+++....-. ....-.....+++.++|.++++ .. +.|+.++. +++....+...
T Consensus 146 ~l~s~~~dg~i~iwd~~~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 217 (402)
T 2aq5_A 146 VLLSAGCDNVILVWDVGTGAAVLTLG--------PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRP 217 (402)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEEC--------TTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECS
T ss_pred EEEEEcCCCEEEEEECCCCCccEEEe--------cCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccC
Confidence 334444455555443 2222110000 0011124578999999865554 44 78999985 46655544211
Q ss_pred cCCCCceeeEEEeCCCCeEEEEe---CCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCc
Q psy8782 264 VTRVAYRYHIAYSPLDGTLYISD---PESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYP 340 (482)
Q Consensus 264 ~~~~~~p~giavd~~~g~lyVaD---~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P 340 (482)
..-..+..++++| ++.++++- ...+.|+.++.... ...+....- + .-...
T Consensus 218 -~~~~~~~~~~~~~-~~~~l~~g~~~~~d~~i~iwd~~~~----~~~~~~~~~--------------~-------~~~~v 270 (402)
T 2aq5_A 218 -HEGTRPVHAVFVS-EGKILTTGFSRMSERQVALWDTKHL----EEPLSLQEL--------------D-------TSSGV 270 (402)
T ss_dssp -SCSSSCCEEEECS-TTEEEEEEECTTCCEEEEEEETTBC----SSCSEEEEC--------------C-------CCSSC
T ss_pred -CCCCcceEEEEcC-CCcEEEEeccCCCCceEEEEcCccc----cCCceEEec--------------c-------CCCce
Confidence 1112367899999 78777766 67788999985210 000111100 0 01235
Q ss_pred ceEEEeCCCcEE-EEEC-CC-EEEEcC-CCc--EEEEEc
Q psy8782 341 KGVAVSADNILY-FADG-TN-IRMVDR-DGI--VTTVIG 373 (482)
Q Consensus 341 ~giavd~~G~ly-vaD~-~n-Ir~i~~-~G~--i~ti~G 373 (482)
..++++++|..+ ++.. .+ |+..+. ++. +..+.+
T Consensus 271 ~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~ 309 (402)
T 2aq5_A 271 LLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSM 309 (402)
T ss_dssp EEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEE
T ss_pred eEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecc
Confidence 678999998754 5654 33 888774 344 555543
No 183
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=96.12 E-value=1.1 Score=43.63 Aligned_cols=218 Identities=15% Similarity=0.206 Sum_probs=109.4
Q ss_pred CCCcEEEEeC-CcEEEEcC-CCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCCCeEEEE-cCCC
Q psy8782 129 PDGSLFVGDF-NLIRRIMT-DGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKPRIIKTT-LGDG 205 (482)
Q Consensus 129 ~~G~lyvaD~-~~Irki~~-~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~~~i~~~-~g~G 205 (482)
.+|.||++.. +.|..++. +|++.-....... ....| ++. ++.+|+....+.+..+ +.+|
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~-------------~~~~p---~~~--~~~v~v~~~~g~l~~~d~~tG 163 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGE-------------ALSRP---VVS--DGLVLIHTSNGQLQALNEADG 163 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSC-------------CCSCC---EEE--TTEEEEECTTSEEEEEETTTC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCc-------------eEcCC---EEE--CCEEEEEcCCCeEEEEECCCC
Confidence 4788999987 78999996 5876532222110 01112 111 3356665544433333 2345
Q ss_pred ccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC-CcEEEEcC-CCeEEEEEeeccC-------CCC-ceeeEEE
Q psy8782 206 HQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF-NLIRRIMT-DGTVRTVVRLNVT-------RVA-YRYHIAY 275 (482)
Q Consensus 206 ~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~-~~I~~i~~-~G~v~~~~g~~~~-------~~~-~p~giav 275 (482)
+..-.. .... ....+......+++ +|.||+... +.|..+++ +|++.-....... .+. .....++
T Consensus 164 ~~~W~~--~~~~---~~~~~~~~~~~~~~-~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~ 237 (376)
T 3q7m_A 164 AVKWTV--NLDM---PSLSLRGESAPTTA-FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV 237 (376)
T ss_dssp CEEEEE--ECCC--------CCCCCCEEE-TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE
T ss_pred cEEEEE--eCCC---CceeecCCCCcEEE-CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE
Confidence 432100 0000 00000011122333 578888766 67889985 6876544332110 000 0011233
Q ss_pred eCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEE
Q psy8782 276 SPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFAD 355 (482)
Q Consensus 276 d~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD 355 (482)
. ++.||++.. ++.++.++. .+|+.....- +..+.+++++ ++.||+++
T Consensus 238 ~--~~~v~~~~~-~g~l~~~d~------~tG~~~w~~~-----------------------~~~~~~~~~~-~~~l~~~~ 284 (376)
T 3q7m_A 238 V--NGVVFALAY-NGNLTALDL------RSGQIMWKRE-----------------------LGSVNDFIVD-GNRIYLVD 284 (376)
T ss_dssp E--TTEEEEECT-TSCEEEEET------TTCCEEEEEC-----------------------CCCEEEEEEE-TTEEEEEE
T ss_pred E--CCEEEEEec-CcEEEEEEC------CCCcEEeecc-----------------------CCCCCCceEE-CCEEEEEc
Confidence 3 688998864 578888885 3555432211 1223456665 78999998
Q ss_pred CCC-EEEEcC-CCcEEEEEcCCCCCCCCCcCCCCceEEeccccceeEEee
Q psy8782 356 GTN-IRMVDR-DGIVTTVIGNHMHKSHWKPIPCEGTLNIEEVSETMRDIR 403 (482)
Q Consensus 356 ~~n-Ir~i~~-~G~i~ti~G~~~~~~~~~~~~~dg~l~v~~~~~~~~~l~ 403 (482)
... +..+|+ +|++.-............++..++.||+......+..++
T Consensus 285 ~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d 334 (376)
T 3q7m_A 285 QNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWIN 334 (376)
T ss_dssp TTCCEEEEETTTCCEEEEECTTTTSCCCCCEEETTEEEEECTTSEEEEEE
T ss_pred CCCeEEEEECCCCcEEEeecccCCCcccCCEEECCEEEEEeCCCeEEEEE
Confidence 765 999996 788654433111111123333566777765443444444
No 184
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=96.12 E-value=0.64 Score=45.37 Aligned_cols=198 Identities=13% Similarity=0.049 Sum_probs=101.6
Q ss_pred CceEEEEcCCCcEEEEe-C-CcEEEEcCC-CeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEE-EcCCC
Q psy8782 121 APVALATAPDGSLFVGD-F-NLIRRIMTD-GTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYL-KNKPR 196 (482)
Q Consensus 121 ~P~glavd~~G~lyvaD-~-~~Irki~~~-G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi-~d~~~ 196 (482)
....|++.|+|.++++- . +.|+.++.. ++......... .....+++.++++.+++ ...++
T Consensus 141 ~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~----------------~~v~~v~~s~~~~~~~~s~~~dg 204 (357)
T 4g56_B 141 IVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHS----------------SEVNCVAACPGKDTIFLSCGEDG 204 (357)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCS----------------SCEEEEEECTTCSSCEEEEETTS
T ss_pred CEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCC----------------CCEEEEEEccCCCceeeeeccCC
Confidence 45789999999876654 3 788888764 55444332110 11244555555544443 33455
Q ss_pred eEEEEc-CCCccccCCCcCCCCCCCceeecCCccEEEEcCCC-CEEEE-EC-CcEEEEcC-CCeEEEEEeeccCCCCcee
Q psy8782 197 IIKTTL-GDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDG-SLFVG-DF-NLIRRIMT-DGTVRTVVRLNVTRVAYRY 271 (482)
Q Consensus 197 ~i~~~~-g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G-~lyv~-D~-~~I~~i~~-~G~v~~~~g~~~~~~~~p~ 271 (482)
.+.+.. .+++..... .....-..+..+++.|++ .++++ .. +.|+.++. +++....+. ..-..-.
T Consensus 205 ~v~~wd~~~~~~~~~~--------~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~---~~~~~v~ 273 (357)
T 4g56_B 205 RILLWDTRKPKPATRI--------DFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSA---VHSQNIT 273 (357)
T ss_dssp CEEECCTTSSSCBCBC--------CCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEEC---CCSSCEE
T ss_pred ceEEEECCCCceeeee--------eeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEe---ccceeEE
Confidence 555542 222211100 000111246788898864 55554 44 68888874 444333321 1223457
Q ss_pred eEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeC-CCc
Q psy8782 272 HIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSA-DNI 350 (482)
Q Consensus 272 giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~-~G~ 350 (482)
.|+++|.++.+.++-...+.|+.++. ..+.+....+. -....+|++.| ++.
T Consensus 274 ~l~~sp~~~~~lasgs~D~~i~iwd~------~~~~~~~~~~H----------------------~~~V~~vafsP~d~~ 325 (357)
T 4g56_B 274 GLAYSYHSSPFLASISEDCTVAVLDA------DFSEVFRDLSH----------------------RDFVTGVAWSPLDHS 325 (357)
T ss_dssp EEEECSSSSCCEEEEETTSCEEEECT------TSCEEEEECCC----------------------SSCEEEEEECSSSTT
T ss_pred EEEEcCCCCCEEEEEeCCCEEEEEEC------CCCcEeEECCC----------------------CCCEEEEEEeCCCCC
Confidence 89999844466666566788988885 34443332221 12346799987 677
Q ss_pred EEEEEC-CC-EEEEc--CCCcEEEEEc
Q psy8782 351 LYFADG-TN-IRMVD--RDGIVTTVIG 373 (482)
Q Consensus 351 lyvaD~-~n-Ir~i~--~~G~i~ti~G 373 (482)
++++-+ .. |++.+ ..|+...++.
T Consensus 326 ~l~s~s~Dg~v~iW~~~~~~~~~~~i~ 352 (357)
T 4g56_B 326 KFTTVGWDHKVLHHHLPSEGRTENLIA 352 (357)
T ss_dssp EEEEEETTSCEEEEECC----------
T ss_pred EEEEEcCCCeEEEEECCCCCccccccC
Confidence 666543 33 66554 4565555443
No 185
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=96.10 E-value=0.09 Score=55.71 Aligned_cols=62 Identities=19% Similarity=0.206 Sum_probs=46.3
Q ss_pred eeecCCccEEEEcCCCCEEEEEC--------------CcEEEEcC-CCeEEEEEeeccCCCCceeeEEEeCCCCeEEEE
Q psy8782 222 KQRLLAPVALATAPDGSLFVGDF--------------NLIRRIMT-DGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYIS 285 (482)
Q Consensus 222 ~~~l~~P~giavd~~G~lyv~D~--------------~~I~~i~~-~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVa 285 (482)
...|..|..|++++.|+|||+.- +.+...++ .|++.+++... .-....|++++|+...|||+
T Consensus 472 ~~~f~~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P--~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 472 QNMFNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGP--IGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp TTCCCCEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECC--TTCEEEEEEECTTSSEEEEE
T ss_pred CCCccCCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCC--CCccCcCeeECCCCCEEEEE
Confidence 35688999999999999999864 24666665 48888776532 22467899999955688886
No 186
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=96.08 E-value=0.15 Score=50.00 Aligned_cols=198 Identities=10% Similarity=0.008 Sum_probs=105.0
Q ss_pred CceEEEEcCCCcEEEEeC-CcEEEEcCC-CeEEE---EEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCC
Q psy8782 121 APVALATAPDGSLFVGDF-NLIRRIMTD-GTVRT---VVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKP 195 (482)
Q Consensus 121 ~P~glavd~~G~lyvaD~-~~Irki~~~-G~v~t---i~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~ 195 (482)
.-..|++.|++.++++.. +.|+..+.. ++... ....+- ...-..+.+.+++..+.....+
T Consensus 96 ~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h---------------~~~V~~v~~spdg~~l~sgs~d 160 (357)
T 4g56_B 96 GVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEH---------------DDIVKTLSVFSDGTQAVSGGKD 160 (357)
T ss_dssp CEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCC---------------SSCEEEEEECSSSSEEEEEETT
T ss_pred CEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCC---------------CCCEEEEEECCCCCEEEEEeCC
Confidence 356789999999888876 677766542 32111 110000 0112456677777666666666
Q ss_pred CeEEEEcC-CCccccCCCcCCCCCCCceeecCCccEEEEcCCC-CEEEEEC--CcEEEEcC-CCeEEEEEeeccCCCCce
Q psy8782 196 RIIKTTLG-DGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDG-SLFVGDF--NLIRRIMT-DGTVRTVVRLNVTRVAYR 270 (482)
Q Consensus 196 ~~i~~~~g-~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G-~lyv~D~--~~I~~i~~-~G~v~~~~g~~~~~~~~p 270 (482)
+.|+...- +++.... ....-.....|++.+++ .++++-. +.|+.++. .++....... ...-..+
T Consensus 161 g~v~iwd~~~~~~~~~----------~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~-~~~~~~v 229 (357)
T 4g56_B 161 FSVKVWDLSQKAVLKS----------YNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDF-CASDTIP 229 (357)
T ss_dssp SCEEEEETTTTEEEEE----------ECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCC-TTCCSCE
T ss_pred CeEEEEECCCCcEEEE----------EcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeee-ccccccc
Confidence 66665532 2322110 01112245678888876 3554443 67888874 3433222111 1122346
Q ss_pred eeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCc-EEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCC
Q psy8782 271 YHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYN-VEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADN 349 (482)
Q Consensus 271 ~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~-~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G 349 (482)
..++++|.++.++++-...+.|+.++.. ++. +.++.+. -.....|++.+++
T Consensus 230 ~~v~~sp~~~~~la~g~~d~~i~~wd~~------~~~~~~~~~~~----------------------~~~v~~l~~sp~~ 281 (357)
T 4g56_B 230 TSVTWHPEKDDTFACGDETGNVSLVNIK------NPDSAQTSAVH----------------------SQNITGLAYSYHS 281 (357)
T ss_dssp EEEEECTTSTTEEEEEESSSCEEEEESS------CGGGCEEECCC----------------------SSCEEEEEECSSS
T ss_pred cchhhhhcccceEEEeecccceeEEECC------CCcEeEEEecc----------------------ceeEEEEEEcCCC
Confidence 7899999667777776667888888852 222 2222110 1224678888877
Q ss_pred c-EEE-EECCC-EEEEcC-CCcEEEEE
Q psy8782 350 I-LYF-ADGTN-IRMVDR-DGIVTTVI 372 (482)
Q Consensus 350 ~-lyv-aD~~n-Ir~i~~-~G~i~ti~ 372 (482)
. +.+ +.... ||+.|. .|++....
T Consensus 282 ~~~lasgs~D~~i~iwd~~~~~~~~~~ 308 (357)
T 4g56_B 282 SPFLASISEDCTVAVLDADFSEVFRDL 308 (357)
T ss_dssp SCCEEEEETTSCEEEECTTSCEEEEEC
T ss_pred CCEEEEEeCCCEEEEEECCCCcEeEEC
Confidence 4 333 33333 888885 45555444
No 187
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=96.06 E-value=1.2 Score=43.30 Aligned_cols=126 Identities=11% Similarity=0.051 Sum_probs=70.9
Q ss_pred CCccEEEEcCCCCEEEEEC--CcEEEEcC-CCeEEEEEeeccCC---CCceeeEEEeCCCCeEEEEeCCC---CEEEEEe
Q psy8782 226 LAPVALATAPDGSLFVGDF--NLIRRIMT-DGTVRTVVRLNVTR---VAYRYHIAYSPLDGTLYISDPES---HQILRVK 296 (482)
Q Consensus 226 ~~P~giavd~~G~lyv~D~--~~I~~i~~-~G~v~~~~g~~~~~---~~~p~giavd~~~g~lyVaD~~n---~~I~~~~ 296 (482)
.....+++.+++ ++++-. +.|+.++. +++....+...... -.....++++| ++.++++-... +.|+.++
T Consensus 187 ~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~-~~~~l~~~~~d~~~g~i~i~d 264 (397)
T 1sq9_A 187 QFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP-QGSLLAIAHDSNSFGCITLYE 264 (397)
T ss_dssp CCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS-STTEEEEEEEETTEEEEEEEE
T ss_pred CCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECC-CCCEEEEEecCCCCceEEEEE
Confidence 346789999999 666555 68888885 46655544320001 34568899999 66655555555 7899998
Q ss_pred cCCccCCCCCc-EEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEEC-CC-EEEEcC-CCcE
Q psy8782 297 NAMDFSAPDYN-VEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADG-TN-IRMVDR-DGIV 368 (482)
Q Consensus 297 ~~~~~~~~~g~-~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~-~n-Ir~i~~-~G~i 368 (482)
. .++. +..+.+.... .. .. ....+.-.....+++.+++.++++-. .+ |++.+. ++..
T Consensus 265 ~------~~~~~~~~~~~~~~~---~~-~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 325 (397)
T 1sq9_A 265 T------EFGERIGSLSVPTHS---SQ-AS-----LGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKER 325 (397)
T ss_dssp T------TTCCEEEEECBC-----------------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE
T ss_pred C------CCCcccceeccCccc---cc-cc-----ccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCce
Confidence 5 2343 2233221000 00 00 00000123456899999887666544 33 888875 4543
No 188
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.04 E-value=0.3 Score=53.20 Aligned_cols=112 Identities=10% Similarity=0.113 Sum_probs=71.6
Q ss_pred ccEEEEcCCCCEEEEEC-CcEEEEcCCC-------eEE--EEEeeccCCC--CceeeEEEeCCCCeEEEEeCCCCEEEEE
Q psy8782 228 PVALATAPDGSLFVGDF-NLIRRIMTDG-------TVR--TVVRLNVTRV--AYRYHIAYSPLDGTLYISDPESHQILRV 295 (482)
Q Consensus 228 P~giavd~~G~lyv~D~-~~I~~i~~~G-------~v~--~~~g~~~~~~--~~p~giavd~~~g~lyVaD~~n~~I~~~ 295 (482)
...|+.|++|.|||+.. +.+.+++++. .+. ..... ...+ .....|..|+ +|.|||+....+-+.++
T Consensus 421 v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~i~~i~~d~-~g~lWi~~~t~~Gl~~~ 498 (758)
T 3ott_A 421 TYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSV-HNGLSGMFINQIIPDN-EGNVWVLLYNNKGIDKI 498 (758)
T ss_dssp EEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECG-GGTCSCSCEEEEEECT-TSCEEEEETTCSSEEEE
T ss_pred EEEEEEcCCCCEEEEECCCceEEEccccccccCCcceeccccccc-ccccccceeeeEEEcC-CCCEEEEccCCCCcEEE
Confidence 45788899999999987 6788887542 222 11111 1112 2467788888 89999933324568899
Q ss_pred ecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEECCCEEEEcCC
Q psy8782 296 KNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADGTNIRMVDRD 365 (482)
Q Consensus 296 ~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~~nIr~i~~~ 365 (482)
+. .++.++.+.- ++.. .-..+..|..|++|+|||+-...+.++++.
T Consensus 499 d~------~~~~~~~~~~--------------~~~~----~~~~~~~i~~d~~g~lWigt~~Gl~~~~~~ 544 (758)
T 3ott_A 499 NP------RTREVTKLFA--------------DELT----GEKSPNYLLCDEDGLLWVGFHGGVMRINPK 544 (758)
T ss_dssp ET------TTTEEEEECT--------------TTSC----GGGCEEEEEECTTSCEEEEETTEEEEECC-
T ss_pred eC------CCCceEEecC--------------CCcC----CCcccceEEECCCCCEEEEecCceEEEecC
Confidence 84 3455554421 1100 023577899999999999986558888874
No 189
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=96.03 E-value=1.5 Score=45.29 Aligned_cols=197 Identities=9% Similarity=-0.045 Sum_probs=109.3
Q ss_pred CCCceEEEEcCCCcEEEEe-CCcEEEEcCC-C----e-EEEEEeeCCCcccCCCccccccccccC-CceEEEec--CCCe
Q psy8782 119 LLAPVALATAPDGSLFVGD-FNLIRRIMTD-G----T-VRTVVRLKNQKFEKFPKILTSCFLSLS-PSGILQKG--DGSN 188 (482)
Q Consensus 119 l~~P~glavd~~G~lyvaD-~~~Irki~~~-G----~-v~ti~g~g~~~~~~~~~~~~~~~~~~~-P~gi~~~~--~g~~ 188 (482)
-..+..++++|+|.++++- .+.|+.++.+ + . +.++.+.. .. ...+.+.+ ++..
T Consensus 18 ~~~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~-----------------~~~v~~~~~sp~~~~~~ 80 (615)
T 1pgu_A 18 RNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHG-----------------SSVVTTVKFSPIKGSQY 80 (615)
T ss_dssp TTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTT-----------------TSCEEEEEECSSTTCCE
T ss_pred cCceeEEEECCCCCEEEEecCCeEEEEECCCCCCccccceEEecCC-----------------CceEEEEEECcCCCCCE
Confidence 3457789999999855544 4777777653 4 2 33332211 11 25567777 7766
Q ss_pred EEEEcCCCeEEEEcC-CC--------ccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC-C-----cEEEEcCC
Q psy8782 189 IYLKNKPRIIKTTLG-DG--------HQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF-N-----LIRRIMTD 253 (482)
Q Consensus 189 lyi~d~~~~i~~~~g-~G--------~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~-~-----~I~~i~~~ 253 (482)
+..+..++.+..+.- ++ ..... ....-.....+++.|+|...++-. . .|+.++ .
T Consensus 81 l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~----------~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d-~ 149 (615)
T 1pgu_A 81 LCSGDESGKVIVWGWTFDKESNSVEVNVKSE----------FQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD-S 149 (615)
T ss_dssp EEEEETTSEEEEEEEEEEGGGTEEEEEEEEE----------EECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT-T
T ss_pred EEEecCCCEEEEEeCCCCcccccccccccch----------hhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE-C
Confidence 777766666665533 22 11000 001112457899999997655543 2 566666 3
Q ss_pred CeEEEEEeeccCCCCceeeEEEeCCCCe-EEEEeCCCCEEEEEecCCccCCCCCcEEE-EecCCcccCCCCCCccCCCcc
Q psy8782 254 GTVRTVVRLNVTRVAYRYHIAYSPLDGT-LYISDPESHQILRVKNAMDFSAPDYNVEP-AVGSGERCLPGDEAHCGDGAP 331 (482)
Q Consensus 254 G~v~~~~g~~~~~~~~p~giavd~~~g~-lyVaD~~n~~I~~~~~~~~~~~~~g~~~~-vaG~g~~~~~g~~~~~gdg~~ 331 (482)
++....+ .........++++| ++. ++++-...+.|+.++. ..+.... +.+. .+.
T Consensus 150 ~~~~~~~---~~~~~~v~~~~~~~-~~~~~l~~~~~d~~v~vwd~------~~~~~~~~~~~~-----------~~~--- 205 (615)
T 1pgu_A 150 GNSLGEV---SGHSQRINACHLKQ-SRPMRSMTVGDDGSVVFYQG------PPFKFSASDRTH-----------HKQ--- 205 (615)
T ss_dssp CCEEEEC---CSCSSCEEEEEECS-SSSCEEEEEETTTEEEEEET------TTBEEEEEECSS-----------SCT---
T ss_pred CCcceee---ecCCccEEEEEECC-CCCcEEEEEeCCCcEEEEeC------CCcceeeeeccc-----------CCC---
Confidence 4333322 22234567899999 554 6777777889999985 3333222 2110 000
Q ss_pred ccccccCCcceEEEeCC-CcEEEE-ECCC-EEEEcC-CCcEEEEE
Q psy8782 332 ARDAKLAYPKGVAVSAD-NILYFA-DGTN-IRMVDR-DGIVTTVI 372 (482)
Q Consensus 332 a~~a~l~~P~giavd~~-G~lyva-D~~n-Ir~i~~-~G~i~ti~ 372 (482)
-.....+++.++ +.++++ .... |++.+. ++.....+
T Consensus 206 -----~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 245 (615)
T 1pgu_A 206 -----GSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYI 245 (615)
T ss_dssp -----TCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEEC
T ss_pred -----CceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEe
Confidence 013467888888 775554 4333 887773 55544443
No 190
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=96.03 E-value=1.1 Score=47.78 Aligned_cols=66 Identities=15% Similarity=0.162 Sum_probs=41.3
Q ss_pred cEEEEcC--CCCEEEEEC----CcEEEEcCCCeEEEEEeeccCCCCceee-EEEeCCCCeEEEEeCCCC----EEEEEec
Q psy8782 229 VALATAP--DGSLFVGDF----NLIRRIMTDGTVRTVVRLNVTRVAYRYH-IAYSPLDGTLYISDPESH----QILRVKN 297 (482)
Q Consensus 229 ~giavd~--~G~lyv~D~----~~I~~i~~~G~v~~~~g~~~~~~~~p~g-iavd~~~g~lyVaD~~n~----~I~~~~~ 297 (482)
..+++.| +|.++++.. .+|+.++.+|.....+..+ . ..... ++++|++..||++....+ +|++++.
T Consensus 313 ~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~--~-~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~ 389 (706)
T 2z3z_A 313 HPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKG--E-WEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDI 389 (706)
T ss_dssp SCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCS--S-SCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEET
T ss_pred CCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCC--C-eEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEc
Confidence 5678888 886554433 4678888676654443211 1 11233 789995557888876554 8898884
No 191
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=95.96 E-value=1.1 Score=42.15 Aligned_cols=191 Identities=15% Similarity=0.124 Sum_probs=108.1
Q ss_pred CceEEEEcCCCcEEEEe-C-CcEEEEcC-CCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCCCe
Q psy8782 121 APVALATAPDGSLFVGD-F-NLIRRIMT-DGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKPRI 197 (482)
Q Consensus 121 ~P~glavd~~G~lyvaD-~-~~Irki~~-~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~~~ 197 (482)
....+++.|+|.++++- . +.|+..+. +++......... ..-..+.+.+++..++....++.
T Consensus 25 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~----------------~~v~~~~~~~~~~~l~s~~~d~~ 88 (312)
T 4ery_A 25 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK----------------LGISDVAWSSDSNLLVSASDDKT 88 (312)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCS----------------SCEEEEEECTTSSEEEEEETTSE
T ss_pred cEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCC----------------CceEEEEEcCCCCEEEEECCCCE
Confidence 45678899998866554 3 67777765 455444332110 11245666666666666666666
Q ss_pred EEEEcC-CCccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC--CcEEEEcC-CCeEEEEEeeccCCCCceeeE
Q psy8782 198 IKTTLG-DGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF--NLIRRIMT-DGTVRTVVRLNVTRVAYRYHI 273 (482)
Q Consensus 198 i~~~~g-~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~--~~I~~i~~-~G~v~~~~g~~~~~~~~p~gi 273 (482)
+....- +++.... ....-.....+++.|++.++++-. +.|+.++. +++....+.. .-.....+
T Consensus 89 i~vwd~~~~~~~~~----------~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~~v~~~ 155 (312)
T 4ery_A 89 LKIWDVSSGKCLKT----------LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA---HSDPVSAV 155 (312)
T ss_dssp EEEEETTTCCEEEE----------EECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECC---CSSCEEEE
T ss_pred EEEEECCCCcEEEE----------EcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecC---CCCcEEEE
Confidence 665532 2221100 001112345788899887766655 78888884 4555444321 12235678
Q ss_pred EEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcE-EEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEE
Q psy8782 274 AYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNV-EPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILY 352 (482)
Q Consensus 274 avd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~-~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~ly 352 (482)
+++| ++.++++-...+.|+.++. .++.. ..+.. .. -.....+++++++..+
T Consensus 156 ~~~~-~~~~l~~~~~d~~i~~wd~------~~~~~~~~~~~-------------~~--------~~~~~~~~~~~~~~~l 207 (312)
T 4ery_A 156 HFNR-DGSLIVSSSYDGLCRIWDT------ASGQCLKTLID-------------DD--------NPPVSFVKFSPNGKYI 207 (312)
T ss_dssp EECT-TSSEEEEEETTSCEEEEET------TTCCEEEEECC-------------SS--------CCCEEEEEECTTSSEE
T ss_pred EEcC-CCCEEEEEeCCCcEEEEEC------CCCceeeEEec-------------cC--------CCceEEEEECCCCCEE
Confidence 9998 7766666666788888885 23332 22211 00 0123458899988765
Q ss_pred EEE-CCC-EEEEcC-CCcE
Q psy8782 353 FAD-GTN-IRMVDR-DGIV 368 (482)
Q Consensus 353 vaD-~~n-Ir~i~~-~G~i 368 (482)
++- ..+ |+..+. ++..
T Consensus 208 ~~~~~d~~i~iwd~~~~~~ 226 (312)
T 4ery_A 208 LAATLDNTLKLWDYSKGKC 226 (312)
T ss_dssp EEEETTTEEEEEETTTTEE
T ss_pred EEEcCCCeEEEEECCCCcE
Confidence 554 334 888875 4543
No 192
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=95.90 E-value=1.6 Score=43.41 Aligned_cols=186 Identities=14% Similarity=0.087 Sum_probs=102.9
Q ss_pred CceEEEEcCCCcEEEEeC--CcEEEEcCC-CeEE-EEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCCC
Q psy8782 121 APVALATAPDGSLFVGDF--NLIRRIMTD-GTVR-TVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKPR 196 (482)
Q Consensus 121 ~P~glavd~~G~lyvaD~--~~Irki~~~-G~v~-ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~~ 196 (482)
....|++.++|.++++-. +.|+.++.. +... ++.+.. ..-..+.+.++++.++.+..++
T Consensus 152 ~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~-----------------~~V~~v~~~p~~~~l~s~s~D~ 214 (410)
T 1vyh_C 152 SVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHD-----------------HNVSSVSIMPNGDHIVSASRDK 214 (410)
T ss_dssp CEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCS-----------------SCEEEEEECSSSSEEEEEETTS
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCC-----------------CCEEEEEEeCCCCEEEEEeCCC
Confidence 457889999998776654 667777654 3322 221110 0124455666665566556666
Q ss_pred eEEEEcC-CCccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC--CcEEEEcC-CCeEEEEEeeccCCCCceee
Q psy8782 197 IIKTTLG-DGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF--NLIRRIMT-DGTVRTVVRLNVTRVAYRYH 272 (482)
Q Consensus 197 ~i~~~~g-~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~--~~I~~i~~-~G~v~~~~g~~~~~~~~p~g 272 (482)
.+....- ++..... ....-.....+++.++|.++++-. +.|+.++. .+.....+. ........
T Consensus 215 ~i~~wd~~~~~~~~~----------~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~---~h~~~v~~ 281 (410)
T 1vyh_C 215 TIKMWEVQTGYCVKT----------FTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR---EHRHVVEC 281 (410)
T ss_dssp EEEEEETTTCCEEEE----------EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC---CCSSCEEE
T ss_pred eEEEEECCCCcEEEE----------EeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEec---CCCceEEE
Confidence 6655532 2221100 001112345678889998777665 68888874 444433331 11223456
Q ss_pred EEEeCC-------------------CCeEEEEeCCCCEEEEEecCCccCCCCCc-EEEEecCCcccCCCCCCccCCCccc
Q psy8782 273 IAYSPL-------------------DGTLYISDPESHQILRVKNAMDFSAPDYN-VEPAVGSGERCLPGDEAHCGDGAPA 332 (482)
Q Consensus 273 iavd~~-------------------~g~lyVaD~~n~~I~~~~~~~~~~~~~g~-~~~vaG~g~~~~~g~~~~~gdg~~a 332 (482)
++++|. .+.+.++-...+.|+.++. .++. +..+.|.
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~------~~~~~~~~~~~h------------------ 337 (410)
T 1vyh_C 282 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV------STGMCLMTLVGH------------------ 337 (410)
T ss_dssp EEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEET------TTTEEEEEEECC------------------
T ss_pred EEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEEC------CCCceEEEEECC------------------
Confidence 677662 1556777777788888885 2343 2222221
Q ss_pred cccccCCcceEEEeCCCcEEEEEC-CC-EEEEcC
Q psy8782 333 RDAKLAYPKGVAVSADNILYFADG-TN-IRMVDR 364 (482)
Q Consensus 333 ~~a~l~~P~giavd~~G~lyvaD~-~n-Ir~i~~ 364 (482)
-....+++++++|.++++-+ .. ||+.|.
T Consensus 338 ----~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~ 367 (410)
T 1vyh_C 338 ----DNWVRGVLFHSGGKFILSCADDKTLRVWDY 367 (410)
T ss_dssp ----SSCEEEEEECSSSSCEEEEETTTEEEEECC
T ss_pred ----CCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 12356889999887655544 33 888875
No 193
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=95.77 E-value=1.8 Score=43.16 Aligned_cols=152 Identities=10% Similarity=0.038 Sum_probs=85.0
Q ss_pred CceEEEEcC-CCcEEEEeC--CcEEEEcCCCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCCCe
Q psy8782 121 APVALATAP-DGSLFVGDF--NLIRRIMTDGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKPRI 197 (482)
Q Consensus 121 ~P~glavd~-~G~lyvaD~--~~Irki~~~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~~~ 197 (482)
.-.+|++.| +++++++-. +.|+..+.++............ ...-..+.+.+++..+.....++.
T Consensus 166 ~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~l~~g~~dg~ 232 (435)
T 4e54_B 166 SITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTI-------------NIWFCSLDVSASSRMVVTGDNVGN 232 (435)
T ss_dssp CCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSC-------------SCCCCCEEEETTTTEEEEECSSSB
T ss_pred CEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCC-------------CccEEEEEECCCCCEEEEEeCCCc
Confidence 346889987 677766655 7888888776544333221100 011245667777777777777777
Q ss_pred EEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcCCCC-EEEEE-C-CcEEEEcCC-CeEE-EEEeeccCCCCceee
Q psy8782 198 IKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGS-LFVGD-F-NLIRRIMTD-GTVR-TVVRLNVTRVAYRYH 272 (482)
Q Consensus 198 i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~-lyv~D-~-~~I~~i~~~-G~v~-~~~g~~~~~~~~p~g 272 (482)
|..+.-.+..... ....-..-..|++.|++. ++++- . +.|+.++.. ++.. .+... ...-..-..
T Consensus 233 i~~wd~~~~~~~~----------~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~-~~h~~~v~~ 301 (435)
T 4e54_B 233 VILLNMDGKELWN----------LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYS-LPHRHPVNA 301 (435)
T ss_dssp EEEEESSSCBCCC----------SBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBC-CBCSSCEEE
T ss_pred EeeeccCcceeEE----------EecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEe-eeccccccc
Confidence 7776544432210 111122356789998875 55443 3 667777632 2110 00000 011123467
Q ss_pred EEEeCCCCeEEEEeCCCCEEEEEec
Q psy8782 273 IAYSPLDGTLYISDPESHQILRVKN 297 (482)
Q Consensus 273 iavd~~~g~lyVaD~~n~~I~~~~~ 297 (482)
++++| ++.+.++-...+.|+.++.
T Consensus 302 ~~~sp-dg~~l~s~~~D~~i~iwd~ 325 (435)
T 4e54_B 302 ACFSP-DGARLLTTDQKSEIRVYSA 325 (435)
T ss_dssp CCBCT-TSSEEEEEESSSCEEEEES
T ss_pred eeECC-CCCeeEEEcCCCEEEEEEC
Confidence 88898 7766666666788888885
No 194
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=95.66 E-value=1.9 Score=42.48 Aligned_cols=148 Identities=13% Similarity=0.123 Sum_probs=88.6
Q ss_pred ceEEEEcCCCcEEEEeC--CcEEEEcCC-CeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCCCeE
Q psy8782 122 PVALATAPDGSLFVGDF--NLIRRIMTD-GTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKPRII 198 (482)
Q Consensus 122 P~glavd~~G~lyvaD~--~~Irki~~~-G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~~~i 198 (482)
...+++.++|.++++-. +.|+.++.+ ++......... ..-..+.+.+++..++.+..++.+
T Consensus 126 v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~----------------~~v~~~~~~p~~~~l~s~s~d~~v 189 (393)
T 1erj_A 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHE----------------QDIYSLDYFPSGDKLVSGSGDRTV 189 (393)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS----------------SCEEEEEECTTSSEEEEEETTSEE
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCC----------------CCEEEEEEcCCCCEEEEecCCCcE
Confidence 56899999998766544 788888764 55444332110 112456666777666666666666
Q ss_pred EEEcC-CCccccCCCcCCCCCCCceeecCCccEEEEcC-CCCEEEEEC--CcEEEEcC-CCeEEEEEeec----cCCCCc
Q psy8782 199 KTTLG-DGHQRPLDCKDCNGEAGPKQRLLAPVALATAP-DGSLFVGDF--NLIRRIMT-DGTVRTVVRLN----VTRVAY 269 (482)
Q Consensus 199 ~~~~g-~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~-~G~lyv~D~--~~I~~i~~-~G~v~~~~g~~----~~~~~~ 269 (482)
+...- ++.... ....-.....+++.| +|.++++-. +.|+.++. .++....+... ...-..
T Consensus 190 ~iwd~~~~~~~~-----------~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~ 258 (393)
T 1erj_A 190 RIWDLRTGQCSL-----------TLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDS 258 (393)
T ss_dssp EEEETTTTEEEE-----------EEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSC
T ss_pred EEEECCCCeeEE-----------EEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCC
Confidence 66532 222210 001112356788888 787666655 78888884 45554443211 112234
Q ss_pred eeeEEEeCCCCeEEEEeCCCCEEEEEec
Q psy8782 270 RYHIAYSPLDGTLYISDPESHQILRVKN 297 (482)
Q Consensus 270 p~giavd~~~g~lyVaD~~n~~I~~~~~ 297 (482)
...++++| ++.+.++-...+.|+.++.
T Consensus 259 v~~v~~~~-~g~~l~s~s~d~~v~~wd~ 285 (393)
T 1erj_A 259 VYSVVFTR-DGQSVVSGSLDRSVKLWNL 285 (393)
T ss_dssp EEEEEECT-TSSEEEEEETTSEEEEEEC
T ss_pred EEEEEECC-CCCEEEEEeCCCEEEEEEC
Confidence 67899999 7777777777888988885
No 195
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=95.60 E-value=1.6 Score=41.24 Aligned_cols=148 Identities=7% Similarity=-0.016 Sum_probs=88.6
Q ss_pred CceEEEEcCCCcEEEEeC--CcEEEEcCC-CeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCCCe
Q psy8782 121 APVALATAPDGSLFVGDF--NLIRRIMTD-GTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKPRI 197 (482)
Q Consensus 121 ~P~glavd~~G~lyvaD~--~~Irki~~~-G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~~~ 197 (482)
...+|++.|+|.+.++-. +.|+..+.+ +.....+.... ..-..+.+.++++.+..+..++.
T Consensus 15 ~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~----------------~~v~~~~~~~~~~~l~s~s~d~~ 78 (304)
T 2ynn_A 15 RVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTE----------------TPVRAGKFIARKNWIIVGSDDFR 78 (304)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCS----------------SCEEEEEEEGGGTEEEEEETTSE
T ss_pred ceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccC----------------CcEEEEEEeCCCCEEEEECCCCE
Confidence 457889999998666544 778887754 44333221110 01134556666666666666666
Q ss_pred EEEEcC-CCccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC--CcEEEEcCC-C-eEEEEEeeccCCCCceee
Q psy8782 198 IKTTLG-DGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF--NLIRRIMTD-G-TVRTVVRLNVTRVAYRYH 272 (482)
Q Consensus 198 i~~~~g-~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~--~~I~~i~~~-G-~v~~~~g~~~~~~~~p~g 272 (482)
|+...- +++.... ....-.....|++.|++.++++-. +.|+.++.. + .+...+. ..-.....
T Consensus 79 i~vwd~~~~~~~~~----------~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~---~h~~~v~~ 145 (304)
T 2ynn_A 79 IRVFNYNTGEKVVD----------FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE---GHEHFVMC 145 (304)
T ss_dssp EEEEETTTCCEEEE----------EECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEEC---CCCSCEEE
T ss_pred EEEEECCCCcEEEE----------EeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhc---ccCCcEEE
Confidence 666542 2322100 011122356899999998776655 788888743 3 3333332 12234578
Q ss_pred EEEeCCCCeEEEEeCCCCEEEEEec
Q psy8782 273 IAYSPLDGTLYISDPESHQILRVKN 297 (482)
Q Consensus 273 iavd~~~g~lyVaD~~n~~I~~~~~ 297 (482)
++++|.++.++++-...+.|+.++.
T Consensus 146 v~~~p~~~~~l~sgs~D~~v~iwd~ 170 (304)
T 2ynn_A 146 VAFNPKDPSTFASGCLDRTVKVWSL 170 (304)
T ss_dssp EEECTTCTTEEEEEETTSEEEEEET
T ss_pred EEECCCCCCEEEEEeCCCeEEEEEC
Confidence 9999866777777777889999985
No 196
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=95.60 E-value=1.7 Score=42.11 Aligned_cols=116 Identities=9% Similarity=-0.042 Sum_probs=71.2
Q ss_pred CccEEEEcCCC-CEEEEEC--CcEEEEcCC-CeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccC
Q psy8782 227 APVALATAPDG-SLFVGDF--NLIRRIMTD-GTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFS 302 (482)
Q Consensus 227 ~P~giavd~~G-~lyv~D~--~~I~~i~~~-G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~ 302 (482)
....+++.++| .++++-. +.|+.++.+ ++....+.. ...-.....++++|.++.++++-...+.|+.++.
T Consensus 75 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~----- 148 (383)
T 3ei3_B 75 RVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQG-MGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDF----- 148 (383)
T ss_dssp CEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECC-CSTTCBEEEEEEETTEEEEEEEEETTTEEEEEET-----
T ss_pred CEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeec-CCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEEC-----
Confidence 45678899988 6555554 788888854 444443321 1223356789999855566666667788998885
Q ss_pred CCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEEC-CC-EEEEcCCCcE
Q psy8782 303 APDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADG-TN-IRMVDRDGIV 368 (482)
Q Consensus 303 ~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~-~n-Ir~i~~~G~i 368 (482)
....+..+.+... .-.....+++.+++.++++-. .. |+..+.++..
T Consensus 149 -~~~~~~~~~~~~~-------------------~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 196 (383)
T 3ei3_B 149 -SGSVIQVFAKTDS-------------------WDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHE 196 (383)
T ss_dssp -TSCEEEEEECCCC-------------------SSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCE
T ss_pred -CCCceEEEeccCC-------------------CCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCE
Confidence 2233444332100 012356889999888665544 33 8888876653
No 197
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=95.54 E-value=1.8 Score=41.55 Aligned_cols=188 Identities=12% Similarity=0.056 Sum_probs=104.4
Q ss_pred CceEEEEcCCCcEEEEeC--CcEEEEcC-CCeEE-EEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCCC
Q psy8782 121 APVALATAPDGSLFVGDF--NLIRRIMT-DGTVR-TVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKPR 196 (482)
Q Consensus 121 ~P~glavd~~G~lyvaD~--~~Irki~~-~G~v~-ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~~ 196 (482)
....+++.+++.+.++-. +.|+..+. +++.. ++.+.. ..-..+.+.+++..+..+..++
T Consensus 78 ~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~-----------------~~v~~v~~sp~~~~l~s~~~d~ 140 (343)
T 2xzm_R 78 FVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQ-----------------SEVYSVAFSPDNRQILSAGAER 140 (343)
T ss_dssp CEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCC-----------------SCEEEEEECSSTTEEEEEETTS
T ss_pred ceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCC-----------------CcEEEEEECCCCCEEEEEcCCC
Confidence 356788999998766554 77887775 35433 333211 1124566777776676666666
Q ss_pred eEEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcCCC----------CEEEEE-C-CcEEEEcCCCeEEEEEeecc
Q psy8782 197 IIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDG----------SLFVGD-F-NLIRRIMTDGTVRTVVRLNV 264 (482)
Q Consensus 197 ~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G----------~lyv~D-~-~~I~~i~~~G~v~~~~g~~~ 264 (482)
.++...-.+....... . ....-.....+++.|++ .++++- . +.|+.++.++.....+..
T Consensus 141 ~i~~wd~~~~~~~~~~-~------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-- 211 (343)
T 2xzm_R 141 EIKLWNILGECKFSSA-E------KENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKA-- 211 (343)
T ss_dssp CEEEEESSSCEEEECC-T------TTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEEC--
T ss_pred EEEEEeccCCceeeee-c------ccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcC--
Confidence 6666543322110000 0 00011123455666654 344433 3 788888877765544322
Q ss_pred CCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCc-EEEEecCCcccCCCCCCccCCCccccccccCCcceE
Q psy8782 265 TRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYN-VEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGV 343 (482)
Q Consensus 265 ~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~-~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~gi 343 (482)
.-.....++++| ++.+.++-...+.|+.++... .+. ...+. .+ .....+
T Consensus 212 -h~~~v~~~~~s~-~g~~l~sgs~dg~v~iwd~~~-----~~~~~~~~~---------------~~--------~~v~~v 261 (343)
T 2xzm_R 212 -HESNVNHLSISP-NGKYIATGGKDKKLLIWDILN-----LTYPQREFD---------------AG--------STINQI 261 (343)
T ss_dssp -CSSCEEEEEECT-TSSEEEEEETTCEEEEEESSC-----CSSCSEEEE---------------CS--------SCEEEE
T ss_pred -ccccceEEEECC-CCCEEEEEcCCCeEEEEECCC-----Ccccceeec---------------CC--------CcEEEE
Confidence 223467899999 787777777788898888421 111 01100 00 125678
Q ss_pred EEeCCCcEEEEECCC-EEEEcC
Q psy8782 344 AVSADNILYFADGTN-IRMVDR 364 (482)
Q Consensus 344 avd~~G~lyvaD~~n-Ir~i~~ 364 (482)
++++++.+..+.... |+..+.
T Consensus 262 ~~sp~~~~la~~~d~~v~iw~~ 283 (343)
T 2xzm_R 262 AFNPKLQWVAVGTDQGVKIFNL 283 (343)
T ss_dssp EECSSSCEEEEEESSCEEEEES
T ss_pred EECCCCCEEEEECCCCEEEEEe
Confidence 999998866554443 777764
No 198
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=95.52 E-value=1.7 Score=41.27 Aligned_cols=185 Identities=14% Similarity=0.055 Sum_probs=101.3
Q ss_pred ceEEEEcCCCcEEEEeC--CcEEEEcC-CCeEEE-EEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCCCe
Q psy8782 122 PVALATAPDGSLFVGDF--NLIRRIMT-DGTVRT-VVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKPRI 197 (482)
Q Consensus 122 P~glavd~~G~lyvaD~--~~Irki~~-~G~v~t-i~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~~~ 197 (482)
...+++.++|.+.++-. +.|+..+. +|+... +.+.. ..-..+.+.+++..+.....++.
T Consensus 68 v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~-----------------~~v~~~~~~~~~~~l~s~s~D~~ 130 (319)
T 3frx_A 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHK-----------------SDVMSVDIDKKASMIISGSRDKT 130 (319)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCS-----------------SCEEEEEECTTSCEEEEEETTSC
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCC-----------------CcEEEEEEcCCCCEEEEEeCCCe
Confidence 45688889988766554 77888875 465433 33221 01234555566655555555666
Q ss_pred EEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcC------CCCEEEEEC--CcEEEEcCC-CeEEEEEeeccCCCC
Q psy8782 198 IKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAP------DGSLFVGDF--NLIRRIMTD-GTVRTVVRLNVTRVA 268 (482)
Q Consensus 198 i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~------~G~lyv~D~--~~I~~i~~~-G~v~~~~g~~~~~~~ 268 (482)
++...-.+..... ....-.....+++.| ++.++++-. +.|+.++.. ++....+. ..-.
T Consensus 131 i~vwd~~~~~~~~----------~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~---~h~~ 197 (319)
T 3frx_A 131 IKVWTIKGQCLAT----------LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFI---GHNS 197 (319)
T ss_dssp EEEEETTSCEEEE----------ECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEEC---CCCS
T ss_pred EEEEECCCCeEEE----------EeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeec---CCCC
Confidence 6655433322100 000111223455544 333444433 678888754 44433321 1223
Q ss_pred ceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEE-EEecCCcccCCCCCCccCCCccccccccCCcceEEEeC
Q psy8782 269 YRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVE-PAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSA 347 (482)
Q Consensus 269 ~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~-~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~ 347 (482)
....++++| ++.+.++-...+.|+.++. ..+... .+.+ -.....+++.+
T Consensus 198 ~v~~~~~sp-~g~~l~s~~~dg~i~iwd~------~~~~~~~~~~~-----------------------~~~v~~~~~sp 247 (319)
T 3frx_A 198 NINTLTASP-DGTLIASAGKDGEIMLWNL------AAKKAMYTLSA-----------------------QDEVFSLAFSP 247 (319)
T ss_dssp CEEEEEECT-TSSEEEEEETTCEEEEEET------TTTEEEEEEEC-----------------------CSCEEEEEECS
T ss_pred cEEEEEEcC-CCCEEEEEeCCCeEEEEEC------CCCcEEEEecC-----------------------CCcEEEEEEcC
Confidence 467899999 8877777777889999985 233322 2211 01356799999
Q ss_pred CCcEEEEECCC-EEEEcCCC
Q psy8782 348 DNILYFADGTN-IRMVDRDG 366 (482)
Q Consensus 348 ~G~lyvaD~~n-Ir~i~~~G 366 (482)
+|.++++-..+ |++++.+.
T Consensus 248 ~~~~la~~~~~~i~v~~~~~ 267 (319)
T 3frx_A 248 NRYWLAAATATGIKVFSLDP 267 (319)
T ss_dssp SSSEEEEEETTEEEEEEETT
T ss_pred CCCEEEEEcCCCcEEEEeCc
Confidence 99866654444 77776543
No 199
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=95.48 E-value=2.2 Score=42.48 Aligned_cols=109 Identities=12% Similarity=0.032 Sum_probs=66.7
Q ss_pred CccEEEEcC-CCCEEEEEC--CcEEEEcCC-C---eEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCC
Q psy8782 227 APVALATAP-DGSLFVGDF--NLIRRIMTD-G---TVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAM 299 (482)
Q Consensus 227 ~P~giavd~-~G~lyv~D~--~~I~~i~~~-G---~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~ 299 (482)
....+++.| ++.++++.. +.|+.++.. + +....+. ..-..+..|+++|....++++-...+.|+.++...
T Consensus 233 ~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~---~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~ 309 (430)
T 2xyi_A 233 VVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD---AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 309 (430)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEE---CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred CEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEee---cCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCC
Confidence 467899998 667877765 788888854 2 2222221 12245789999994446888877789999998521
Q ss_pred ccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCC-cEEEEEC-CC-EEEEcC
Q psy8782 300 DFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADN-ILYFADG-TN-IRMVDR 364 (482)
Q Consensus 300 ~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G-~lyvaD~-~n-Ir~i~~ 364 (482)
....+..+.+ .-.....|++.+++ .++++-+ .+ |++.+.
T Consensus 310 ----~~~~~~~~~~----------------------h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~ 351 (430)
T 2xyi_A 310 ----LKLKLHSFES----------------------HKDEIFQVQWSPHNETILASSGTDRRLHVWDL 351 (430)
T ss_dssp ----TTSCSEEEEC----------------------CSSCEEEEEECSSCTTEEEEEETTSCCEEEEG
T ss_pred ----CCCCeEEeec----------------------CCCCEEEEEECCCCCCEEEEEeCCCcEEEEeC
Confidence 0111222221 01235678999988 4565543 33 777764
No 200
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.44 E-value=1.3 Score=48.18 Aligned_cols=198 Identities=12% Similarity=0.162 Sum_probs=109.5
Q ss_pred CceEEEEcCCCcEEEEeCCcEEEEcCC-CeEEEEEeeCCCcccCCCccccccccc-cCCceEEEecCCCeEEEEcCCCeE
Q psy8782 121 APVALATAPDGSLFVGDFNLIRRIMTD-GTVRTVVRLKNQKFEKFPKILTSCFLS-LSPSGILQKGDGSNIYLKNKPRII 198 (482)
Q Consensus 121 ~P~glavd~~G~lyvaD~~~Irki~~~-G~v~ti~g~g~~~~~~~~~~~~~~~~~-~~P~gi~~~~~g~~lyi~d~~~~i 198 (482)
....|+.|++|.|||+-.+.|.++++. +.+..+. ..... .+. .....++.+.+++.|||....+..
T Consensus 147 ~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~~~~-~~~~~-----------~~~~~~i~~i~~d~~~~~lWigt~~Gl~ 214 (758)
T 3ott_A 147 TIYSIIRTKDNQIYVGTYNGLCRYIPSNGKFEGIP-LPVHS-----------SQSNLFVNSLLEDTTRQCVWIGTEGYLF 214 (758)
T ss_dssp CEEEEEECTTCCEEEEETTEEEEEETTTTEEEEEC-CCCCT-----------TCSSCCEEEEEEETTTTEEEEEEEEEEE
T ss_pred eEEEEEEcCCCCEEEEeCCCHhhCccCCCceEEec-CCCcc-----------ccccceeEEEEEECCCCEEEEEECCCCe
Confidence 457889999999999987888899875 4554332 11000 000 012345566666678886533333
Q ss_pred EEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEECCcEEEEcCCC-eEEEEEeec--cCCC--CceeeE
Q psy8782 199 KTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDFNLIRRIMTDG-TVRTVVRLN--VTRV--AYRYHI 273 (482)
Q Consensus 199 ~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~~~I~~i~~~G-~v~~~~g~~--~~~~--~~p~gi 273 (482)
..-..+++..... .-.-.....|+.|++|.|||+..+-+.+++++. ++..+.... ...+ +.-..|
T Consensus 215 ~~~~~~~~~~~~~----------~l~~~~i~~i~~d~~g~lWigT~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i 284 (758)
T 3ott_A 215 QYFPSTGQIKQTE----------AFHNNSIKSLALDGNGDLLAGTDNGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNI 284 (758)
T ss_dssp EEETTTTEEEEEE----------EEEEEEEEEEEECTTCCEEEEETTEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEE
T ss_pred EEcCCCCeEEecc----------CCCCCeEEEEEEcCCCCEEEEeCCceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEE
Confidence 3333333321110 000112467889999999999887888998764 343332111 1112 235678
Q ss_pred EEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEE
Q psy8782 274 AYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYF 353 (482)
Q Consensus 274 avd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyv 353 (482)
..|. +|.|||+-.. + +.++.. +.....+.-... .+ ...-+....|+.|++|+|||
T Consensus 285 ~~D~-~g~lWiGT~~-G-l~~~~~-------~~~~~~~~~~~~-----------~~----~~~~~~v~~i~~D~~g~lWi 339 (758)
T 3ott_A 285 FADQ-EHNIWLGTDY-G-ISLSRY-------NSALQFIPISQI-----------TG----TGDGNQFYSLFRDSKGFYWF 339 (758)
T ss_dssp EECT-TCCEEEEESS-S-EEEECC-------CC-CEEEEHHHH-----------SC----SCCCCBEEEEEECTTCCEEE
T ss_pred EEcC-CCCEEEEeCC-c-cccccc-------CCceeEEecccC-----------CC----CCCCceEEEEEEcCCCCEEE
Confidence 8887 8999998753 4 444431 222222210000 00 00012346788999999999
Q ss_pred EECCCEEEEcCC
Q psy8782 354 ADGTNIRMVDRD 365 (482)
Q Consensus 354 aD~~nIr~i~~~ 365 (482)
.....+.++++.
T Consensus 340 Gt~~Gl~~~~~~ 351 (758)
T 3ott_A 340 GGANGLIRFTDP 351 (758)
T ss_dssp EETTEEEEESCT
T ss_pred eeCCcceeeccc
Confidence 975447777643
No 201
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=95.38 E-value=1.8 Score=40.58 Aligned_cols=109 Identities=14% Similarity=0.133 Sum_probs=67.0
Q ss_pred CccEEEEcCCCCEEEEEC--CcEEEEcC-CCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCC
Q psy8782 227 APVALATAPDGSLFVGDF--NLIRRIMT-DGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSA 303 (482)
Q Consensus 227 ~P~giavd~~G~lyv~D~--~~I~~i~~-~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~ 303 (482)
....+++.|+|+++++-. +.|+.++. +++....+.. .-.....++++| ++.++++-...+.|+.++.
T Consensus 67 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~---~~~~v~~~~~~~-~~~~l~s~~~d~~i~iwd~------ 136 (312)
T 4ery_A 67 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG---HSNYVFCCNFNP-QSNLIVSGSFDESVRIWDV------ 136 (312)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC---CSSCEEEEEECS-SSSEEEEEETTSCEEEEET------
T ss_pred ceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcC---CCCCEEEEEEcC-CCCEEEEEeCCCcEEEEEC------
Confidence 356789999998776655 67888874 4554444322 223456789999 7777777667788998885
Q ss_pred CCCcEE-EEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEE-CCC-EEEEcC-CCc
Q psy8782 304 PDYNVE-PAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFAD-GTN-IRMVDR-DGI 367 (482)
Q Consensus 304 ~~g~~~-~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD-~~n-Ir~i~~-~G~ 367 (482)
.++... .+.+. -.....+++++++.++++- ... |+..|. .+.
T Consensus 137 ~~~~~~~~~~~~----------------------~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~ 182 (312)
T 4ery_A 137 KTGKCLKTLPAH----------------------SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 182 (312)
T ss_dssp TTCCEEEEECCC----------------------SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred CCCEEEEEecCC----------------------CCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Confidence 233322 22110 1124568888888765544 333 888875 344
No 202
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=95.32 E-value=1.9 Score=40.52 Aligned_cols=149 Identities=15% Similarity=0.106 Sum_probs=76.8
Q ss_pred ceEEEecCCCeEEEEcCCCeEEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEE-C-CcEEEEcCCCe
Q psy8782 178 SGILQKGDGSNIYLKNKPRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGD-F-NLIRRIMTDGT 255 (482)
Q Consensus 178 ~gi~~~~~g~~lyi~d~~~~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D-~-~~I~~i~~~G~ 255 (482)
..+.+.+++..++....++.+............. ..........+...+++.++++- . +.++.++..+.
T Consensus 90 ~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~ 160 (340)
T 4aow_A 90 SDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRR---------FVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGV 160 (340)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE---------EECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC
T ss_pred EEEEECCCCCEEEEEcccccceEEeecccceeee---------ecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCC
Confidence 4566677776666666666666554332211000 11112234455666666554443 3 67777776554
Q ss_pred EEEEEeeccCCCCceeeEEEeCCC-CeEEEEeCCCCEEEEEecCCccCCCCCcEEE-EecCCcccCCCCCCccCCCcccc
Q psy8782 256 VRTVVRLNVTRVAYRYHIAYSPLD-GTLYISDPESHQILRVKNAMDFSAPDYNVEP-AVGSGERCLPGDEAHCGDGAPAR 333 (482)
Q Consensus 256 v~~~~g~~~~~~~~p~giavd~~~-g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~-vaG~g~~~~~g~~~~~gdg~~a~ 333 (482)
....... .........+++.+.. ..++++-...+.|+.++. .++.... +.+.
T Consensus 161 ~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~------~~~~~~~~~~~h------------------- 214 (340)
T 4aow_A 161 CKYTVQD-ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL------ANCKLKTNHIGH------------------- 214 (340)
T ss_dssp EEEEECS-SSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEET------TTTEEEEEECCC-------------------
T ss_pred ceEEEEe-ccccCcccceEEccCCCCcEEEEEcCCCEEEEEEC------CCCceeeEecCC-------------------
Confidence 3332211 1222334567776633 345566656677877774 2333222 2110
Q ss_pred ccccCCcceEEEeCCCcEEEEEC-CC-EEEEcC
Q psy8782 334 DAKLAYPKGVAVSADNILYFADG-TN-IRMVDR 364 (482)
Q Consensus 334 ~a~l~~P~giavd~~G~lyvaD~-~n-Ir~i~~ 364 (482)
-.....|+++++|.++++-+ .. |+..|.
T Consensus 215 ---~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~ 244 (340)
T 4aow_A 215 ---TGYLNTVTVSPDGSLCASGGKDGQAMLWDL 244 (340)
T ss_dssp ---SSCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred ---CCcEEEEEECCCCCEEEEEeCCCeEEEEEe
Confidence 11246788988888666543 33 777774
No 203
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=95.29 E-value=0.52 Score=45.66 Aligned_cols=188 Identities=9% Similarity=0.017 Sum_probs=97.3
Q ss_pred CceEEEEcCCCcEEEEe-C-CcEEEEcCC-Ce----EEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEc
Q psy8782 121 APVALATAPDGSLFVGD-F-NLIRRIMTD-GT----VRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKN 193 (482)
Q Consensus 121 ~P~glavd~~G~lyvaD-~-~~Irki~~~-G~----v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d 193 (482)
....+++.++|+++++- . +.|+.++.+ +. ..++.+. ......+.+.+++..++...
T Consensus 57 ~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~-----------------~~~v~~~~~~~~~~~l~~~~ 119 (377)
T 3dwl_C 57 IVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRL-----------------NRAATFVRWSPNEDKFAVGS 119 (377)
T ss_dssp CEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCC-----------------SSCEEEEECCTTSSCCEEEE
T ss_pred eEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeccc-----------------CCceEEEEECCCCCEEEEEe
Confidence 45788999998755544 3 677776653 22 1111111 01124455556665666655
Q ss_pred CCCeEEEEcCC-CccccCCCcCCCCCCCcee-ecCCccEEEEcCCCCEEEEEC--CcEEEEcCC----------------
Q psy8782 194 KPRIIKTTLGD-GHQRPLDCKDCNGEAGPKQ-RLLAPVALATAPDGSLFVGDF--NLIRRIMTD---------------- 253 (482)
Q Consensus 194 ~~~~i~~~~g~-G~~~~~~~~~~~g~~~~~~-~l~~P~giavd~~G~lyv~D~--~~I~~i~~~---------------- 253 (482)
.++.+....-. +...... ..... .-.....+++.|++.++++-. +.|+.++..
T Consensus 120 ~d~~i~iwd~~~~~~~~~~-------~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 192 (377)
T 3dwl_C 120 GARVISVCYFEQENDWWVS-------KHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSR 192 (377)
T ss_dssp SSSCEEECCC-----CCCC-------EEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSC
T ss_pred cCCeEEEEEECCcccceee-------eEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccc
Confidence 55555543221 1100000 00001 122457899999997666554 678887742
Q ss_pred ---CeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcE-----EEEecCCcccCCCCCCc
Q psy8782 254 ---GTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNV-----EPAVGSGERCLPGDEAH 325 (482)
Q Consensus 254 ---G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~-----~~vaG~g~~~~~g~~~~ 325 (482)
++....+ ..-.....++++| ++.++++-...+.|+.++.. ++.. ..+.
T Consensus 193 ~~~~~~~~~~----~~~~~v~~~~~sp-~~~~l~~~~~d~~i~iwd~~------~~~~~~~~~~~~~------------- 248 (377)
T 3dwl_C 193 LPFNTVCAEY----PSGGWVHAVGFSP-SGNALAYAGHDSSVTIAYPS------APEQPPRALITVK------------- 248 (377)
T ss_dssp CCEEEEEECC----CCSSSEEEEEECT-TSSCEEEEETTTEEC-CEEC------STTSCEEECCCEE-------------
T ss_pred cchhhhhhcc----cCCceEEEEEECC-CCCEEEEEeCCCcEEEEECC------CCCCcceeeEeec-------------
Confidence 2222221 2223467899999 67655555567788877742 2211 1111
Q ss_pred cCCCccccccccCCcceEEEeCCCcEEEEECCC-EEEEcCC
Q psy8782 326 CGDGAPARDAKLAYPKGVAVSADNILYFADGTN-IRMVDRD 365 (482)
Q Consensus 326 ~gdg~~a~~a~l~~P~giavd~~G~lyvaD~~n-Ir~i~~~ 365 (482)
..-.....+++.++|.++++-... +.+++.+
T Consensus 249 ---------~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~ 280 (377)
T 3dwl_C 249 ---------LSQLPLRSLLWANESAIVAAGYNYSPILLQGN 280 (377)
T ss_dssp ---------CSSSCEEEEEEEETTEEEEEESSSSEEEECCC
T ss_pred ---------CCCCceEEEEEcCCCCEEEEEcCCcEEEEEeC
Confidence 111235689999999887776655 6676653
No 204
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=95.27 E-value=2.5 Score=41.51 Aligned_cols=107 Identities=13% Similarity=0.047 Sum_probs=67.8
Q ss_pred CccEEEEcCCCCEEEEEC--CcEEEEcCC-CeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeC--CCCEEEEEecCCcc
Q psy8782 227 APVALATAPDGSLFVGDF--NLIRRIMTD-GTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDP--ESHQILRVKNAMDF 301 (482)
Q Consensus 227 ~P~giavd~~G~lyv~D~--~~I~~i~~~-G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~--~n~~I~~~~~~~~~ 301 (482)
....+++.+++.++++-. +.|+.++.. ++....+. ..-.....++++|.+..++++-. ..+.|+.++.
T Consensus 219 ~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~---~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~---- 291 (401)
T 4aez_A 219 EVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKT---NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNA---- 291 (401)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEEC---CCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEET----
T ss_pred CeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEec---CCcceEEEEEECCCCCCEEEEecCCCCCEEEEEEC----
Confidence 457899999987666554 789988854 44444332 12234678999995667888754 6889999985
Q ss_pred CCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEEC----CCEEEEcC
Q psy8782 302 SAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADG----TNIRMVDR 364 (482)
Q Consensus 302 ~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~----~nIr~i~~ 364 (482)
.++........ -.....+++.+++..+++-. +.|++.+.
T Consensus 292 --~~~~~~~~~~~----------------------~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~ 334 (401)
T 4aez_A 292 --ATGARVNTVDA----------------------GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSY 334 (401)
T ss_dssp --TTCCEEEEEEC----------------------SSCEEEEEECSSSSEEEEEECTTTCEEEEEEE
T ss_pred --CCCCEEEEEeC----------------------CCcEEEEEECCCCCeEEEEeecCCCcEEEEec
Confidence 34443222210 01356889999888666522 22777764
No 205
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=95.13 E-value=0.52 Score=49.20 Aligned_cols=104 Identities=13% Similarity=0.121 Sum_probs=59.4
Q ss_pred EEEcCCC--CEEEEEC-CcEEEEcC-CCeEEEEEeeccCCCCceeeEEEeCCCC-eEEEEe--CCC-CEEEEEecCCccC
Q psy8782 231 LATAPDG--SLFVGDF-NLIRRIMT-DGTVRTVVRLNVTRVAYRYHIAYSPLDG-TLYISD--PES-HQILRVKNAMDFS 302 (482)
Q Consensus 231 iavd~~G--~lyv~D~-~~I~~i~~-~G~v~~~~g~~~~~~~~p~giavd~~~g-~lyVaD--~~n-~~I~~~~~~~~~~ 302 (482)
+++.++| .+|++.. +.+..++. .|+..++..... ..++++| +| .|+.+. ..+ ..|++++.
T Consensus 115 ~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~------~~~~~sp-DG~~la~~~~~~~~~~~i~~~d~----- 182 (582)
T 3o4h_A 115 LSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG------FGFVSDI-RGDLIAGLGFFGGGRVSLFTSNL----- 182 (582)
T ss_dssp EEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS------CEEEEEE-ETTEEEEEEEEETTEEEEEEEET-----
T ss_pred eeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC------ceEEECC-CCCEEEEEEEcCCCCeEEEEEcC-----
Confidence 3444444 5666666 55556664 456555543211 6789999 55 455332 222 66888885
Q ss_pred CCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCc-EEEEECCC---EEEEcCC-CcEE
Q psy8782 303 APDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNI-LYFADGTN---IRMVDRD-GIVT 369 (482)
Q Consensus 303 ~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~-lyvaD~~n---Ir~i~~~-G~i~ 369 (482)
.+|....+.+. . .....+++.|||. |+.++... |+++|.+ |...
T Consensus 183 -~~g~~~~l~~~-------------~---------~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 183 -SSGGLRVFDSG-------------E---------GSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE 231 (582)
T ss_dssp -TTCCCEEECCS-------------S---------CEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE
T ss_pred -CCCCceEeecC-------------C---------CccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE
Confidence 34555544321 0 1126788999987 55455443 8888865 5555
No 206
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=95.11 E-value=6.1 Score=45.07 Aligned_cols=67 Identities=15% Similarity=0.176 Sum_probs=46.5
Q ss_pred CccEEEEcCCCCEEEEEC--CcEEEEcCC-CeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEec
Q psy8782 227 APVALATAPDGSLFVGDF--NLIRRIMTD-GTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKN 297 (482)
Q Consensus 227 ~P~giavd~~G~lyv~D~--~~I~~i~~~-G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~ 297 (482)
....+++.|+|.+.++-. +.|+.++.+ +.....+. ........++++| ++...++-...+.|+.++.
T Consensus 842 ~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~---~h~~~v~~v~~sp-dg~~l~s~s~dg~v~vw~~ 911 (1249)
T 3sfz_A 842 TIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCR---GHLSWVHGVMFSP-DGSSFLTASDDQTIRVWET 911 (1249)
T ss_dssp CCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEEC---CCSSCEEEEEECT-TSSEEEEEETTSCEEEEEH
T ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecC---CCccceEEEEECC-CCCEEEEEeCCCeEEEEEc
Confidence 456789999998777766 688888854 44443332 2334578899999 7766666666778887774
No 207
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=94.98 E-value=2.7 Score=43.35 Aligned_cols=149 Identities=9% Similarity=-0.008 Sum_probs=80.2
Q ss_pred ceEEEEcC--CCcEEEE-eC-CcEEEEcCC-C--------eEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCe
Q psy8782 122 PVALATAP--DGSLFVG-DF-NLIRRIMTD-G--------TVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSN 188 (482)
Q Consensus 122 P~glavd~--~G~lyva-D~-~~Irki~~~-G--------~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~ 188 (482)
...+++.| +|.++++ .. +.|+.++.+ + .......... .....+.+.+++..
T Consensus 67 v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~----------------~~v~~~~~s~~~~~ 130 (615)
T 1pgu_A 67 VTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLA----------------GPISDISWDFEGRR 130 (615)
T ss_dssp EEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCS----------------SCEEEEEECTTSSE
T ss_pred EEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhccc----------------ccEEEEEEeCCCCE
Confidence 68899999 9986554 44 677776652 3 2222111100 11245666666665
Q ss_pred EEEEcCC----CeEEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcCCCC-EEE-EEC-CcEEEEcC-CCeEEEEE
Q psy8782 189 IYLKNKP----RIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGS-LFV-GDF-NLIRRIMT-DGTVRTVV 260 (482)
Q Consensus 189 lyi~d~~----~~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~-lyv-~D~-~~I~~i~~-~G~v~~~~ 260 (482)
+...... ..+..+. .+..... ....-.....+++.|++. +++ +.. +.|+.++. .++....+
T Consensus 131 l~~~~~~~~~~~~v~~~d-~~~~~~~----------~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~ 199 (615)
T 1pgu_A 131 LCVVGEGRDNFGVFISWD-SGNSLGE----------VSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASD 199 (615)
T ss_dssp EEEEECCSSCSEEEEETT-TCCEEEE----------CCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEE
T ss_pred EEEeccCCCCccEEEEEE-CCCccee----------eecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeee
Confidence 5554432 2333322 2211100 011122456889999885 444 444 78888884 45554444
Q ss_pred eeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEec
Q psy8782 261 RLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKN 297 (482)
Q Consensus 261 g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~ 297 (482)
......-.....++++|.++.++++-...+.|+.++.
T Consensus 200 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~ 236 (615)
T 1pgu_A 200 RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDG 236 (615)
T ss_dssp CSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEET
T ss_pred cccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEEC
Confidence 2211111146789999932776666666788998885
No 208
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=94.87 E-value=2.4 Score=39.22 Aligned_cols=189 Identities=15% Similarity=0.113 Sum_probs=98.8
Q ss_pred ceEEEEcCCCcEEE-EeC-CcEEEEcCC-CeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCCCeE
Q psy8782 122 PVALATAPDGSLFV-GDF-NLIRRIMTD-GTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKPRII 198 (482)
Q Consensus 122 P~glavd~~G~lyv-aD~-~~Irki~~~-G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~~~i 198 (482)
...|++ +++.+++ +.. +.|+.++.+ +.......... .....+.+.+++..++....++.+
T Consensus 21 v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~----------------~~v~~~~~~~~~~~l~~~~~dg~i 83 (313)
T 3odt_A 21 VRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQ----------------GFLNSVCYDSEKELLLFGGKDTMI 83 (313)
T ss_dssp EEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECS----------------SCEEEEEEETTTTEEEEEETTSCE
T ss_pred cEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCC----------------ccEEEEEECCCCCEEEEecCCCeE
Confidence 456666 6665444 444 667766643 44433332211 123567778888777777777666
Q ss_pred EEEcCCCcc--ccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC-CcEEEEcCCCeEEEEEeeccCCCCceeeEEE
Q psy8782 199 KTTLGDGHQ--RPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF-NLIRRIMTDGTVRTVVRLNVTRVAYRYHIAY 275 (482)
Q Consensus 199 ~~~~g~G~~--~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~-~~I~~i~~~G~v~~~~g~~~~~~~~p~giav 275 (482)
..+.-.... .... .....-.....+++++ ..|+.+.. +.|+.++ .++....+.. .......+++
T Consensus 84 ~~~~~~~~~~~~~~~--------~~~~~~~~i~~~~~~~-~~l~~~~~d~~i~~~d-~~~~~~~~~~---~~~~v~~~~~ 150 (313)
T 3odt_A 84 NGVPLFATSGEDPLY--------TLIGHQGNVCSLSFQD-GVVISGSWDKTAKVWK-EGSLVYNLQA---HNASVWDAKV 150 (313)
T ss_dssp EEEETTCCTTSCC-C--------EECCCSSCEEEEEEET-TEEEEEETTSEEEEEE-TTEEEEEEEC---CSSCEEEEEE
T ss_pred EEEEeeecCCCCccc--------chhhcccCEEEEEecC-CEEEEEeCCCCEEEEc-CCcEEEeccc---CCCceeEEEE
Confidence 654321110 0000 0011112335566632 34444444 6788887 4544443322 2234566777
Q ss_pred eCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEE
Q psy8782 276 SPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFAD 355 (482)
Q Consensus 276 d~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD 355 (482)
.+.++.++++-...+.|+.++. ......+.+. .-.....+++.+++.++.+.
T Consensus 151 ~~~~~~~l~~~~~d~~i~i~d~-------~~~~~~~~~~---------------------~~~~i~~~~~~~~~~~~~~~ 202 (313)
T 3odt_A 151 VSFSENKFLTASADKTIKLWQN-------DKVIKTFSGI---------------------HNDVVRHLAVVDDGHFISCS 202 (313)
T ss_dssp EETTTTEEEEEETTSCEEEEET-------TEEEEEECSS---------------------CSSCEEEEEEEETTEEEEEE
T ss_pred ccCCCCEEEEEECCCCEEEEec-------CceEEEEecc---------------------CcccEEEEEEcCCCeEEEcc
Confidence 7645655666566778888872 2222222210 11235678888888866666
Q ss_pred CCC-EEEEcC-CCcE
Q psy8782 356 GTN-IRMVDR-DGIV 368 (482)
Q Consensus 356 ~~n-Ir~i~~-~G~i 368 (482)
... |+..+. ++..
T Consensus 203 ~dg~i~i~d~~~~~~ 217 (313)
T 3odt_A 203 NDGLIKLVDMHTGDV 217 (313)
T ss_dssp TTSEEEEEETTTCCE
T ss_pred CCCeEEEEECCchhh
Confidence 655 888875 3543
No 209
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=94.82 E-value=4.7 Score=42.29 Aligned_cols=119 Identities=13% Similarity=0.006 Sum_probs=62.8
Q ss_pred CCceEEEEcCCCc-EEEE-eC-CcEEEEcC-CCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCC
Q psy8782 120 LAPVALATAPDGS-LFVG-DF-NLIRRIMT-DGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKP 195 (482)
Q Consensus 120 ~~P~glavd~~G~-lyva-D~-~~Irki~~-~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~ 195 (482)
.....+++.|++. ++++ .. +.|+..+. .++....+..-. ..-..+.+.+++..+..+..+
T Consensus 148 ~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~----------------~~V~~v~fspdg~~las~s~D 211 (611)
T 1nr0_A 148 RAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHT----------------KFVHSVRYNPDGSLFASTGGD 211 (611)
T ss_dssp SCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCS----------------SCEEEEEECTTSSEEEEEETT
T ss_pred CCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeecccc----------------CceEEEEECCCCCEEEEEECC
Confidence 3567899999886 3443 33 77777764 344333221100 112456666666655555666
Q ss_pred CeEEEEc-CCCccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC--CcEEEEcC-CCeEE
Q psy8782 196 RIIKTTL-GDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF--NLIRRIMT-DGTVR 257 (482)
Q Consensus 196 ~~i~~~~-g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~--~~I~~i~~-~G~v~ 257 (482)
+.++... .+|+....-. .........-....++++.|+|.++++-. +.|+.++. +++..
T Consensus 212 ~~i~lwd~~~g~~~~~~~---~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~ 274 (611)
T 1nr0_A 212 GTIVLYNGVDGTKTGVFE---DDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVE 274 (611)
T ss_dssp SCEEEEETTTCCEEEECB---CTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred CcEEEEECCCCcEeeeec---cccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCcee
Confidence 6666654 2332211000 00000001223467899999998776655 67888874 35543
No 210
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=94.69 E-value=1.5 Score=42.40 Aligned_cols=69 Identities=22% Similarity=0.165 Sum_probs=37.7
Q ss_pred ccEEEEcC-CCC-E-EEEEC------CcEEEEcCCCeEEEEEeeccCCCCceeeEEEeCCCCeE-EEEeCCCC---EEEE
Q psy8782 228 PVALATAP-DGS-L-FVGDF------NLIRRIMTDGTVRTVVRLNVTRVAYRYHIAYSPLDGTL-YISDPESH---QILR 294 (482)
Q Consensus 228 P~giavd~-~G~-l-yv~D~------~~I~~i~~~G~v~~~~g~~~~~~~~p~giavd~~~g~l-yVaD~~n~---~I~~ 294 (482)
...+++.| ||. | |+.+. .+|+.++.++.....+.... .......++++|++..| |+++.... .|+.
T Consensus 190 ~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 268 (388)
T 3pe7_A 190 LGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHA-EGESCTHEFWVPDGSALVYVSYLKGSPDRFIYS 268 (388)
T ss_dssp EEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCC-TTEEEEEEEECTTSSCEEEEEEETTCCCEEEEE
T ss_pred ccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCC-CCcccccceECCCCCEEEEEecCCCCCcceEEE
Confidence 45678888 774 4 33332 37888887664332221111 00123457899944446 55654332 4999
Q ss_pred Eec
Q psy8782 295 VKN 297 (482)
Q Consensus 295 ~~~ 297 (482)
++.
T Consensus 269 ~d~ 271 (388)
T 3pe7_A 269 ADP 271 (388)
T ss_dssp ECT
T ss_pred Eec
Confidence 985
No 211
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=94.67 E-value=2.8 Score=40.76 Aligned_cols=156 Identities=10% Similarity=-0.002 Sum_probs=87.5
Q ss_pred CCceEEEEcCC-CcEEEEeC--CcEEEEcCC-CeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEE-EcC
Q psy8782 120 LAPVALATAPD-GSLFVGDF--NLIRRIMTD-GTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYL-KNK 194 (482)
Q Consensus 120 ~~P~glavd~~-G~lyvaD~--~~Irki~~~-G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi-~d~ 194 (482)
.....+++.++ +.++++-. +.|+.++.. ++........... .+ .......+.+.+++..+++ ...
T Consensus 166 ~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-~~---------~~~~v~~~~~~~~~~~~l~~~~~ 235 (416)
T 2pm9_A 166 DEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPN-SG---------IKQQLSVVEWHPKNSTRVATATG 235 (416)
T ss_dssp CCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCS-SC---------CCCCEEEEEECSSCTTEEEEEEC
T ss_pred CCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccc-cc---------cCCceEEEEECCCCCCEEEEEEC
Confidence 35678999998 67766654 778888764 5444333211000 00 0012356666666644333 333
Q ss_pred CC---eEEEEcC-CCccccCCCcCCCCCCCce-eecCCccEEEEcC-CCCEEEEEC--CcEEEEcC-CCeEEEEEeeccC
Q psy8782 195 PR---IIKTTLG-DGHQRPLDCKDCNGEAGPK-QRLLAPVALATAP-DGSLFVGDF--NLIRRIMT-DGTVRTVVRLNVT 265 (482)
Q Consensus 195 ~~---~i~~~~g-~G~~~~~~~~~~~g~~~~~-~~l~~P~giavd~-~G~lyv~D~--~~I~~i~~-~G~v~~~~g~~~~ 265 (482)
++ .+..+.- ++...... .. ..-.....+++.| ++.++++-. +.|+.++. +++....+..
T Consensus 236 d~~~~~i~~~d~~~~~~~~~~---------~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~--- 303 (416)
T 2pm9_A 236 SDNDPSILIWDLRNANTPLQT---------LNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPA--- 303 (416)
T ss_dssp CSSSCCCCEEETTSTTSCSBC---------CCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEEC---
T ss_pred CCCCceEEEEeCCCCCCCcEE---------eecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecC---
Confidence 33 4444432 11110000 11 1223467899998 776555554 78998884 4555444432
Q ss_pred CCCceeeEEEeCCCC-eEEEEeCCCCEEEEEecC
Q psy8782 266 RVAYRYHIAYSPLDG-TLYISDPESHQILRVKNA 298 (482)
Q Consensus 266 ~~~~p~giavd~~~g-~lyVaD~~n~~I~~~~~~ 298 (482)
.-.....++++| ++ .++++-...++|+.++..
T Consensus 304 ~~~~v~~~~~s~-~~~~~l~s~~~d~~i~iw~~~ 336 (416)
T 2pm9_A 304 RGNWCFKTKFAP-EAPDLFACASFDNKIEVQTLQ 336 (416)
T ss_dssp SSSCCCCEEECT-TCTTEEEECCSSSEEEEEESC
T ss_pred CCCceEEEEECC-CCCCEEEEEecCCcEEEEEcc
Confidence 223457899999 65 788888888999988864
No 212
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=94.60 E-value=2.4 Score=39.98 Aligned_cols=204 Identities=8% Similarity=-0.030 Sum_probs=106.8
Q ss_pred CceEEEEcCCCc--EEEEeC-CcEEEEcC-C-CeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCC
Q psy8782 121 APVALATAPDGS--LFVGDF-NLIRRIMT-D-GTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKP 195 (482)
Q Consensus 121 ~P~glavd~~G~--lyvaD~-~~Irki~~-~-G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~ 195 (482)
....+++.++|. |+.+.. +.|+.++. + +...++.+... ......+.+.+ ++.++.+..+
T Consensus 58 ~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~---------------~~~v~~l~~~~-~~~l~s~~~d 121 (342)
T 1yfq_A 58 PLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEA---------------NLGICRICKYG-DDKLIAASWD 121 (342)
T ss_dssp CEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCC---------------CSCEEEEEEET-TTEEEEEETT
T ss_pred ceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEeccccCC---------------CCceEEEEeCC-CCEEEEEcCC
Confidence 467889999888 555555 78888876 4 44433322000 01125666777 6566666667
Q ss_pred CeEEEEcCC----------CccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC-CcEEEEcCCC--e-EEEEEe
Q psy8782 196 RIIKTTLGD----------GHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF-NLIRRIMTDG--T-VRTVVR 261 (482)
Q Consensus 196 ~~i~~~~g~----------G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~-~~I~~i~~~G--~-v~~~~g 261 (482)
+.+..+.-. ++... ....-..+..+++.+++ |+++.. +.|+.++... . ......
T Consensus 122 ~~i~iwd~~~~~~~~~~~~~~~~~-----------~~~~~~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~ 189 (342)
T 1yfq_A 122 GLIEVIDPRNYGDGVIAVKNLNSN-----------NTKVKNKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDDNGTIEE 189 (342)
T ss_dssp SEEEEECHHHHTTBCEEEEESCSS-----------SSSSCCCEEEEEECSSE-EEEEESTTEEEEEESSCCTTCCCEEEE
T ss_pred CeEEEEcccccccccccccCCeee-----------EEeeCCceEEEEecCCc-EEEEeCCCeEEEEECCccccccceeee
Confidence 777766321 11100 00111346788898887 777777 6888888554 2 111111
Q ss_pred eccCCCCceeeEEEeC-CCCeEEEEeCCCCEEEEEecCCccCCC-CCcEEEEecCCcccCCCCCCccCCCccccccccCC
Q psy8782 262 LNVTRVAYRYHIAYSP-LDGTLYISDPESHQILRVKNAMDFSAP-DYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAY 339 (482)
Q Consensus 262 ~~~~~~~~p~giavd~-~~g~lyVaD~~n~~I~~~~~~~~~~~~-~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~ 339 (482)
...-.....++++| ....|++ -...+.|+.++........ ......+.+.... . .+ ......
T Consensus 190 --~~~~~~i~~i~~~~~~~~~l~~-~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~-------~--~~----~~~~~~ 253 (342)
T 1yfq_A 190 --SGLKYQIRDVALLPKEQEGYAC-SSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLN-------L--KD----TNLAYP 253 (342)
T ss_dssp --CSCSSCEEEEEECSGGGCEEEE-EETTSEEEEEECCTTCCSTTCTTCEEEECCCCC-------T--TC----CSSCCC
T ss_pred --cCCCCceeEEEECCCCCCEEEE-EecCCcEEEEEEcCCCcccccccceeeeccccc-------c--cc----ccccee
Confidence 12223567889987 5444444 4456777776642100000 0122222221100 0 00 011235
Q ss_pred cceEEEeCCCcEEE-EECCC-EEEEcCC-CcE
Q psy8782 340 PKGVAVSADNILYF-ADGTN-IRMVDRD-GIV 368 (482)
Q Consensus 340 P~giavd~~G~lyv-aD~~n-Ir~i~~~-G~i 368 (482)
...+++++++.+++ +.... |++.+.. +..
T Consensus 254 i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 285 (342)
T 1yfq_A 254 VNSIEFSPRHKFLYTAGSDGIISCWNLQTRKK 285 (342)
T ss_dssp EEEEEECTTTCCEEEEETTSCEEEEETTTTEE
T ss_pred EEEEEEcCCCCEEEEecCCceEEEEcCccHhH
Confidence 67899999887444 44443 8888753 543
No 213
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=94.50 E-value=3.5 Score=39.45 Aligned_cols=148 Identities=9% Similarity=0.039 Sum_probs=79.9
Q ss_pred ceEEEecCCCeEEEEcCCCeEEEEcC-CCccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC--CcEEEEcCCC
Q psy8782 178 SGILQKGDGSNIYLKNKPRIIKTTLG-DGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF--NLIRRIMTDG 254 (482)
Q Consensus 178 ~gi~~~~~g~~lyi~d~~~~i~~~~g-~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~--~~I~~i~~~G 254 (482)
..+.+.+++..+..+..++.++...- +++.... ....-.....+++.|+|..+++-. +.|+.++..+
T Consensus 80 ~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~----------~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~ 149 (343)
T 2xzm_R 80 SDLALSQENCFAISSSWDKTLRLWDLRTGTTYKR----------FVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG 149 (343)
T ss_dssp EEEEECSSTTEEEEEETTSEEEEEETTSSCEEEE----------EECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS
T ss_pred EEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEE----------EcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC
Confidence 34555566655555555666665532 2221100 011112456899999997666544 7898888766
Q ss_pred eEEEEEeeccCCCCceeeEEEeCCC---------CeEEEEeCCCCEEEEEecCCccCCCCCcE-EEEecCCcccCCCCCC
Q psy8782 255 TVRTVVRLNVTRVAYRYHIAYSPLD---------GTLYISDPESHQILRVKNAMDFSAPDYNV-EPAVGSGERCLPGDEA 324 (482)
Q Consensus 255 ~v~~~~g~~~~~~~~p~giavd~~~---------g~lyVaD~~n~~I~~~~~~~~~~~~~g~~-~~vaG~g~~~~~g~~~ 324 (482)
..................++++|.. +.++++-...+.|+.++. ++.. ..+.+.
T Consensus 150 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-------~~~~~~~~~~h---------- 212 (343)
T 2xzm_R 150 ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-------NFQIRYTFKAH---------- 212 (343)
T ss_dssp CEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-------TTEEEEEEECC----------
T ss_pred CceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-------CCceeEEEcCc----------
Confidence 5433221111222335667777732 145666666788888872 3322 222110
Q ss_pred ccCCCccccccccCCcceEEEeCCCcEEEEEC-CC-EEEEcC
Q psy8782 325 HCGDGAPARDAKLAYPKGVAVSADNILYFADG-TN-IRMVDR 364 (482)
Q Consensus 325 ~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~-~n-Ir~i~~ 364 (482)
-.....++++++|.++++-+ .. |+..|.
T Consensus 213 ------------~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~ 242 (343)
T 2xzm_R 213 ------------ESNVNHLSISPNGKYIATGGKDKKLLIWDI 242 (343)
T ss_dssp ------------SSCEEEEEECTTSSEEEEEETTCEEEEEES
T ss_pred ------------cccceEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 12356789999988666544 33 777764
No 214
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=94.49 E-value=5.7 Score=41.79 Aligned_cols=110 Identities=10% Similarity=0.074 Sum_probs=67.5
Q ss_pred ceEEEecCCCeEEEEcCCCeEEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcCCCC-EEEEEC-CcEEEEcCCCe
Q psy8782 178 SGILQKGDGSNIYLKNKPRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGS-LFVGDF-NLIRRIMTDGT 255 (482)
Q Consensus 178 ~gi~~~~~g~~lyi~d~~~~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~-lyv~D~-~~I~~i~~~G~ 255 (482)
..++++++|..|-++..++.+..+...+.....+ ...... =..-..+++.|||. |+++.. +.|+.++..+.
T Consensus 89 ~~vawSPdG~~LAs~s~dg~V~iwd~~~~l~~l~-----~~~~~~--~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~ 161 (588)
T 2j04_A 89 RVCKPSPIDDWMAVLSNNGNVSVFKDNKMLTNLD-----SKGNLS--SRTYHCFEWNPIESSIVVGNEDGELQFFSIRKN 161 (588)
T ss_dssp EEEEECSSSSCEEEEETTSCEEEEETTEEEEECC-----CSSCST--TTCEEEEEECSSSSCEEEEETTSEEEEEECCCC
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEeCCceeeecc-----CCCccc--cccEEEEEEcCCCCEEEEEcCCCEEEEEECCCC
Confidence 5778888888888888888777776443211110 000000 01245899999995 555555 78999986554
Q ss_pred --------EEEEEee-ccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEec
Q psy8782 256 --------VRTVVRL-NVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKN 297 (482)
Q Consensus 256 --------v~~~~g~-~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~ 297 (482)
....+.. ..+...+-..++++| +| +++-...+.|+.++.
T Consensus 162 ~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP-dg--Laass~D~tVrlWd~ 209 (588)
T 2j04_A 162 SENTPEFYFESSIRLSDAGSKDWVTHIVWYE-DV--LVAALSNNSVFSMTV 209 (588)
T ss_dssp TTTCCCCEEEEEEECSCTTCCCCEEEEEEET-TE--EEEEETTCCEEEECC
T ss_pred ccccccceeeeeeecccccccccEEEEEEcC-Cc--EEEEeCCCeEEEEEC
Confidence 1222221 122345788999999 77 556566788888884
No 215
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=94.46 E-value=3.7 Score=39.60 Aligned_cols=70 Identities=13% Similarity=0.103 Sum_probs=47.2
Q ss_pred CccEEEEcCCCCEEEEEC-----CcEEEEcC-CCeEEEEEeecc----------CCCCceeeEEEeCCCCeEEEEeCCCC
Q psy8782 227 APVALATAPDGSLFVGDF-----NLIRRIMT-DGTVRTVVRLNV----------TRVAYRYHIAYSPLDGTLYISDPESH 290 (482)
Q Consensus 227 ~P~giavd~~G~lyv~D~-----~~I~~i~~-~G~v~~~~g~~~----------~~~~~p~giavd~~~g~lyVaD~~n~ 290 (482)
....+++.+++.++++-. +.|+.++. +++....+.... ..-.....++++| ++.++++-...+
T Consensus 235 ~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg 313 (397)
T 1sq9_A 235 SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDG 313 (397)
T ss_dssp CEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTS
T ss_pred ccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECC-CCCEEEEEeCCC
Confidence 467899999997666554 37888884 565554442200 0233567899999 776666666788
Q ss_pred EEEEEec
Q psy8782 291 QILRVKN 297 (482)
Q Consensus 291 ~I~~~~~ 297 (482)
.|+.++.
T Consensus 314 ~i~iwd~ 320 (397)
T 1sq9_A 314 KLRFWDV 320 (397)
T ss_dssp EEEEEET
T ss_pred eEEEEEc
Confidence 9999985
No 216
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=94.39 E-value=5.9 Score=41.54 Aligned_cols=196 Identities=13% Similarity=0.088 Sum_probs=109.7
Q ss_pred CceEEEEcCCCcEEEEeC--CcEEEEcCC-C--eEE-EEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcC
Q psy8782 121 APVALATAPDGSLFVGDF--NLIRRIMTD-G--TVR-TVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNK 194 (482)
Q Consensus 121 ~P~glavd~~G~lyvaD~--~~Irki~~~-G--~v~-ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~ 194 (482)
.-..+++.|+|.+.++-. +.||..+.. + ... ++.+.. ..-..+.+++++..+..+..
T Consensus 61 ~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~-----------------~~v~~v~fs~dg~~l~~~~~ 123 (611)
T 1nr0_A 61 QTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFS-----------------GPVKDISWDSESKRIAAVGE 123 (611)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSS-----------------SCEEEEEECTTSCEEEEEEC
T ss_pred ceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccC-----------------CceEEEEECCCCCEEEEEEC
Confidence 356789999998766544 678877752 2 222 222110 01245667777766655432
Q ss_pred C----CeEEEEcCCCccccCCCcCCCCCCCceeecCCccEEEEcCCCC-EEEEEC--CcEEEEc-CCCeEEEEEeeccCC
Q psy8782 195 P----RIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGS-LFVGDF--NLIRRIM-TDGTVRTVVRLNVTR 266 (482)
Q Consensus 195 ~----~~i~~~~g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~-lyv~D~--~~I~~i~-~~G~v~~~~g~~~~~ 266 (482)
. ..+.... .|.... .....-.....+++.|++. ++++-. +.|+.++ +.++....+. ..
T Consensus 124 ~~~~~~~v~~wd-~~~~~~----------~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~---~H 189 (611)
T 1nr0_A 124 GRERFGHVFLFD-TGTSNG----------NLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG---EH 189 (611)
T ss_dssp CSSCSEEEEETT-TCCBCB----------CCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEEC---CC
T ss_pred CCCceeEEEEee-CCCCcc----------eecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeec---cc
Confidence 2 1333322 222110 0112223467899999885 344433 7888887 4455544432 22
Q ss_pred CCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEe
Q psy8782 267 VAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVS 346 (482)
Q Consensus 267 ~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd 346 (482)
-.....++++| ++.++++-...+.|+.++. .++........... ...+.-....++++.
T Consensus 190 ~~~V~~v~fsp-dg~~las~s~D~~i~lwd~------~~g~~~~~~~~~~~--------------~~~~h~~~V~~v~~s 248 (611)
T 1nr0_A 190 TKFVHSVRYNP-DGSLFASTGGDGTIVLYNG------VDGTKTGVFEDDSL--------------KNVAHSGSVFGLTWS 248 (611)
T ss_dssp SSCEEEEEECT-TSSEEEEEETTSCEEEEET------TTCCEEEECBCTTS--------------SSCSSSSCEEEEEEC
T ss_pred cCceEEEEECC-CCCEEEEEECCCcEEEEEC------CCCcEeeeeccccc--------------cccccCCCEEEEEEC
Confidence 23567899999 8888888777888999985 34443322210000 000112346789999
Q ss_pred CCCcEEEEEC-CC-EEEEcC-CCcE
Q psy8782 347 ADNILYFADG-TN-IRMVDR-DGIV 368 (482)
Q Consensus 347 ~~G~lyvaD~-~n-Ir~i~~-~G~i 368 (482)
++|.++++-+ .+ ||..|. ++..
T Consensus 249 pdg~~l~s~s~D~~v~lWd~~~~~~ 273 (611)
T 1nr0_A 249 PDGTKIASASADKTIKIWNVATLKV 273 (611)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEE
T ss_pred CCCCEEEEEeCCCeEEEEeCCCCce
Confidence 9998666544 34 888885 4554
No 217
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=94.30 E-value=4.8 Score=40.17 Aligned_cols=69 Identities=13% Similarity=0.002 Sum_probs=44.6
Q ss_pred CccEEEEcCCCCEE-EEEC--CcEEEEcC---CCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEec
Q psy8782 227 APVALATAPDGSLF-VGDF--NLIRRIMT---DGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKN 297 (482)
Q Consensus 227 ~P~giavd~~G~ly-v~D~--~~I~~i~~---~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~ 297 (482)
....+++.|+|..+ ++-. +.|+.++. .++....+.. ......+..++++|++..|++++. .+.|+.++.
T Consensus 104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~-~g~v~~~~~ 178 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKR-FCFSKRPNAISIAEDDTTVIIADK-FGDVYSIDI 178 (450)
T ss_dssp CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEE-EECSSCEEEEEECTTSSEEEEEET-TSEEEEEET
T ss_pred ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeec-ccCCCCceEEEEcCCCCEEEEEeC-CCcEEEEec
Confidence 56789999999764 5554 67777763 4554444321 112245789999994445665554 788888874
No 218
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=94.29 E-value=4.3 Score=39.58 Aligned_cols=202 Identities=11% Similarity=0.048 Sum_probs=104.1
Q ss_pred ceEEEEcCCCcEEEEeC--CcEEEEcC-CCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCCCeE
Q psy8782 122 PVALATAPDGSLFVGDF--NLIRRIMT-DGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKPRII 198 (482)
Q Consensus 122 P~glavd~~G~lyvaD~--~~Irki~~-~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~~~i 198 (482)
-..+++.|+|.++++-. +.|+..+. +++....+.... ..-..+++.+++..+.....++.+
T Consensus 69 V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~----------------~~v~~~~~s~~g~~las~~~d~~v 132 (380)
T 3iz6_a 69 VYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHC----------------PWVMECAFAPNGQSVACGGLDSAC 132 (380)
T ss_dssp EEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCC----------------TTCCCCEECTTSSEEEECCSSSCC
T ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCC----------------CCEEEEEECCCCCEEEEeeCCCcE
Confidence 46788888887655544 67888775 354433222110 012345566666555555555555
Q ss_pred EEEcCCCccccCCCcCCCCCCCc----eeecCCccEEEEcCC-CC-EEEEEC-CcEEEEcC-CCeEEEEEeec--cCCCC
Q psy8782 199 KTTLGDGHQRPLDCKDCNGEAGP----KQRLLAPVALATAPD-GS-LFVGDF-NLIRRIMT-DGTVRTVVRLN--VTRVA 268 (482)
Q Consensus 199 ~~~~g~G~~~~~~~~~~~g~~~~----~~~l~~P~giavd~~-G~-lyv~D~-~~I~~i~~-~G~v~~~~g~~--~~~~~ 268 (482)
..+.-...... .+.... ...-.....+++.|+ +. |+.+.. +.|+.++. .|+....++.. .....
T Consensus 133 ~iw~~~~~~~~------~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~ 206 (380)
T 3iz6_a 133 SIFNLSSQADR------DGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTA 206 (380)
T ss_dssp EEEECCCCSSC------CCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCS
T ss_pred EEEECCCCccc------cCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCcc
Confidence 44421110000 000000 001111223444443 23 443333 67888873 45555554321 11223
Q ss_pred ceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCC
Q psy8782 269 YRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSAD 348 (482)
Q Consensus 269 ~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~ 348 (482)
....+++.+.++.++++-...+.|+.++... ....+.++.|. -.....+++.|+
T Consensus 207 ~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~----~~~~~~~~~~h----------------------~~~v~~v~~~p~ 260 (380)
T 3iz6_a 207 DVLSLSINSLNANMFISGSCDTTVRLWDLRI----TSRAVRTYHGH----------------------EGDINSVKFFPD 260 (380)
T ss_dssp CEEEEEECSSSCCEEEEEETTSCEEEEETTT----TCCCCEEECCC----------------------SSCCCEEEECTT
T ss_pred CeEEEEeecCCCCEEEEEECCCeEEEEECCC----CCcceEEECCc----------------------CCCeEEEEEecC
Confidence 3567788776788888888888999998521 01112222221 123568999999
Q ss_pred CcEEEEECCC--EEEEcC-CCcEEEE
Q psy8782 349 NILYFADGTN--IRMVDR-DGIVTTV 371 (482)
Q Consensus 349 G~lyvaD~~n--Ir~i~~-~G~i~ti 371 (482)
|..+++-+.. ||..|. .|.....
T Consensus 261 ~~~l~s~s~D~~i~lwd~~~~~~~~~ 286 (380)
T 3iz6_a 261 GQRFGTGSDDGTCRLFDMRTGHQLQV 286 (380)
T ss_dssp SSEEEEECSSSCEEEEETTTTEEEEE
T ss_pred CCeEEEEcCCCeEEEEECCCCcEEEE
Confidence 9887776644 898885 4554333
No 219
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=94.21 E-value=4.4 Score=39.45 Aligned_cols=115 Identities=12% Similarity=0.079 Sum_probs=74.0
Q ss_pred CccEEEEcCCCCEEEEEC--CcEEEEcC-CCeEEEEEeeccC----CCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCC
Q psy8782 227 APVALATAPDGSLFVGDF--NLIRRIMT-DGTVRTVVRLNVT----RVAYRYHIAYSPLDGTLYISDPESHQILRVKNAM 299 (482)
Q Consensus 227 ~P~giavd~~G~lyv~D~--~~I~~i~~-~G~v~~~~g~~~~----~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~ 299 (482)
....+++.|+|..+++-. +.|+.++. .|+....+..... .......++++| +|.+.++-..++.|+.++.
T Consensus 251 ~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~vwd~-- 327 (380)
T 3iz6_a 251 DINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSI-SGRLLFAGYSNGDCYVWDT-- 327 (380)
T ss_dssp CCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECS-SSSEEEEECTTSCEEEEET--
T ss_pred CeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECC-CCCEEEEEECCCCEEEEEC--
Confidence 356899999998888777 78999984 5665555432211 122356899999 8888888888899999985
Q ss_pred ccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEECCC--EEEEcCC
Q psy8782 300 DFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADGTN--IRMVDRD 365 (482)
Q Consensus 300 ~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~~n--Ir~i~~~ 365 (482)
..+......+... .+.-.....+++.++|.++++-+.. |++.+..
T Consensus 328 ----~~~~~~~~~~~~~-----------------~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 328 ----LLAEMVLNLGTLQ-----------------NSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp ----TTCCEEEEECCSC-----------------SSCCCCCCEEEECSSSSEEEEECTTSCEEEEECC
T ss_pred ----CCCceEEEEeccc-----------------CCCCCceEEEEECCCCCEEEEeeCCCCEEEEecC
Confidence 2344332222100 0111235689999999887776533 6666543
No 220
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=94.15 E-value=4.6 Score=42.52 Aligned_cols=69 Identities=20% Similarity=0.173 Sum_probs=43.3
Q ss_pred CccEEEEcCCCCEEEEEC--C--cEEEEcC-CCeEEEEEeeccCCCCc------eeeEEEeCCCCeEEEEeC-CCCEEEE
Q psy8782 227 APVALATAPDGSLFVGDF--N--LIRRIMT-DGTVRTVVRLNVTRVAY------RYHIAYSPLDGTLYISDP-ESHQILR 294 (482)
Q Consensus 227 ~P~giavd~~G~lyv~D~--~--~I~~i~~-~G~v~~~~g~~~~~~~~------p~giavd~~~g~lyVaD~-~n~~I~~ 294 (482)
.+..+++.|||.||++.. + +|++++. +|+...+... ...... ...+++++ ++.++++-. +..+|++
T Consensus 243 ~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~-~~~~~~p~w~~~~~~~~~~~-~~~~~~~~~~~~~~l~~ 320 (662)
T 3azo_A 243 AIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRR-EEEFAGPLWTPGMRWFAPLA-NGLIAVVHGKGAAVLGI 320 (662)
T ss_dssp CEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCC-SSBSSCCCCSTTCCSEEECT-TSCEEEEEBSSSCEEEE
T ss_pred eEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccc-cccccCccccccCceEeEeC-CCEEEEEEEcCccEEEE
Confidence 466788999998877665 3 7999987 5665544321 111111 34688887 666665533 5567777
Q ss_pred Eec
Q psy8782 295 VKN 297 (482)
Q Consensus 295 ~~~ 297 (482)
++.
T Consensus 321 ~d~ 323 (662)
T 3azo_A 321 LDP 323 (662)
T ss_dssp EET
T ss_pred EEC
Confidence 774
No 221
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=94.03 E-value=0.91 Score=47.32 Aligned_cols=67 Identities=12% Similarity=0.069 Sum_probs=40.8
Q ss_pred ccEEEEcCCCC-EEEEEC-C--cEEEEcCCC-eEEEEEeeccCCCC-----ceeeEEEeCCCCeEEEEeCCCCEEEEEe
Q psy8782 228 PVALATAPDGS-LFVGDF-N--LIRRIMTDG-TVRTVVRLNVTRVA-----YRYHIAYSPLDGTLYISDPESHQILRVK 296 (482)
Q Consensus 228 P~giavd~~G~-lyv~D~-~--~I~~i~~~G-~v~~~~g~~~~~~~-----~p~giavd~~~g~lyVaD~~n~~I~~~~ 296 (482)
...+++.|||. |+.++. + .|++++.++ +.. +......... .+...+++| +|.+|++-...++++.+.
T Consensus 197 ~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~g~~~l~~ 273 (582)
T 3o4h_A 197 FSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLP-DGRLAVVARREGRSAVFI 273 (582)
T ss_dssp EEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECT-TSCEEEEEEETTEEEEEE
T ss_pred cccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcC-CCcEEEEEEcCCcEEEEE
Confidence 36789999996 554444 4 799999765 444 3321111111 122333999 678888877777777776
No 222
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=94.00 E-value=5.1 Score=39.35 Aligned_cols=121 Identities=7% Similarity=0.020 Sum_probs=70.4
Q ss_pred CccEEEEcCCCCEEEEEC-CcEEEEcCC--CeEEEEEeecc----CCCCceeeEEEeCCCC-eEEEEeCCCCEEEEEecC
Q psy8782 227 APVALATAPDGSLFVGDF-NLIRRIMTD--GTVRTVVRLNV----TRVAYRYHIAYSPLDG-TLYISDPESHQILRVKNA 298 (482)
Q Consensus 227 ~P~giavd~~G~lyv~D~-~~I~~i~~~--G~v~~~~g~~~----~~~~~p~giavd~~~g-~lyVaD~~n~~I~~~~~~ 298 (482)
....+++.++|.++++-. +.|+.++.. ++...++.... ..-.....++++| ++ .++++-...+.|+.++..
T Consensus 179 ~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~s~~~dg~i~iwd~~ 257 (447)
T 3dw8_B 179 HINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP-NSCNTFVYSSSKGTIRLCDMR 257 (447)
T ss_dssp CCCEEEECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS-SCTTEEEEEETTSCEEEEETT
T ss_pred ceEEEEEcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC-CCCcEEEEEeCCCeEEEEECc
Confidence 356899999998777666 788888866 34444332211 1123467899999 65 777777778889888852
Q ss_pred CccCCCCCc-----EEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEE-ECCCEEEEcC
Q psy8782 299 MDFSAPDYN-----VEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFA-DGTNIRMVDR 364 (482)
Q Consensus 299 ~~~~~~~g~-----~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyva-D~~nIr~i~~ 364 (482)
.+. +..+.+.... ...............++++++|.++++ ..+.|++.+.
T Consensus 258 ------~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~ 313 (447)
T 3dw8_B 258 ------ASALCDRHSKLFEEPEDP----------SNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDL 313 (447)
T ss_dssp ------TCSSSCTTCEEECCC---------------CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEET
T ss_pred ------CCccccceeeEeccCCCc----------cccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeC
Confidence 222 2332221000 000000011124678999999986654 4433888875
No 223
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=93.89 E-value=5.7 Score=39.56 Aligned_cols=153 Identities=11% Similarity=-0.001 Sum_probs=89.2
Q ss_pred CCceEEEEcCCCcEE-EEeC--CcEEEEcC---CCeE-EEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEE
Q psy8782 120 LAPVALATAPDGSLF-VGDF--NLIRRIMT---DGTV-RTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLK 192 (482)
Q Consensus 120 ~~P~glavd~~G~ly-vaD~--~~Irki~~---~G~v-~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~ 192 (482)
....++++.|+|..+ ++-. +.|+.++. ++.. .++..... ...+..+.+.+++..|+++
T Consensus 103 ~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~---------------~~~v~~~~~sp~~~~l~~~ 167 (450)
T 2vdu_B 103 SYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCF---------------SKRPNAISIAEDDTTVIIA 167 (450)
T ss_dssp CCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEEC---------------SSCEEEEEECTTSSEEEEE
T ss_pred CceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccC---------------CCCceEEEEcCCCCEEEEE
Confidence 357899999999864 5443 66666653 3443 33322110 1235678888888888888
Q ss_pred cCCCeEEEEcC-CCccccCCCcCCCCCCCceeecCCccEEEEcCC---CCEEE-EEC-CcEEEEcC-CCeEEEEEeeccC
Q psy8782 193 NKPRIIKTTLG-DGHQRPLDCKDCNGEAGPKQRLLAPVALATAPD---GSLFV-GDF-NLIRRIMT-DGTVRTVVRLNVT 265 (482)
Q Consensus 193 d~~~~i~~~~g-~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~---G~lyv-~D~-~~I~~i~~-~G~v~~~~g~~~~ 265 (482)
+..+.+..+.- ++...... .............|++.|+ +.+++ ++. +.|+.++. .++....+- ..
T Consensus 168 ~~~g~v~~~~~~~~~~~~~~------~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~--~~ 239 (450)
T 2vdu_B 168 DKFGDVYSIDINSIPEEKFT------QEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWL--FG 239 (450)
T ss_dssp ETTSEEEEEETTSCCCSSCC------CCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEEC--CC
T ss_pred eCCCcEEEEecCCccccccc------ceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeee--cC
Confidence 77777766542 22211000 0001223345678999998 75544 444 68888874 454433221 12
Q ss_pred CCCceeeEEEeCCCCeEEEEeCCCCEEEEEec
Q psy8782 266 RVAYRYHIAYSPLDGTLYISDPESHQILRVKN 297 (482)
Q Consensus 266 ~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~ 297 (482)
.......++++ ++.++++-...+.|+.++.
T Consensus 240 h~~~v~~~~~s--d~~~l~s~~~d~~v~vwd~ 269 (450)
T 2vdu_B 240 HKHFVSSICCG--KDYLLLSAGGDDKIFAWDW 269 (450)
T ss_dssp CSSCEEEEEEC--STTEEEEEESSSEEEEEET
T ss_pred CCCceEEEEEC--CCCEEEEEeCCCeEEEEEC
Confidence 22456788998 5555555567789999986
No 224
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=93.66 E-value=5.8 Score=38.91 Aligned_cols=177 Identities=5% Similarity=-0.035 Sum_probs=90.8
Q ss_pred CceEEEEcCCCcEEEEeC-CcEEEEcCC--CeEEEEEeeCCCcccCCCccccccccccCCceEEEecCC-CeEEEEcCCC
Q psy8782 121 APVALATAPDGSLFVGDF-NLIRRIMTD--GTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDG-SNIYLKNKPR 196 (482)
Q Consensus 121 ~P~glavd~~G~lyvaD~-~~Irki~~~--G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g-~~lyi~d~~~ 196 (482)
....+++.++|.++++-. +.|+.++.+ +....+.......+.+. ......+.+.+++ ..+..+..++
T Consensus 179 ~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~---------~~~v~~~~~~p~~~~~l~s~~~dg 249 (447)
T 3dw8_B 179 HINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEEL---------TEVITAAEFHPNSCNTFVYSSSKG 249 (447)
T ss_dssp CCCEEEECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGC---------CCCEEEEEECSSCTTEEEEEETTS
T ss_pred ceEEEEEcCCCCEEEEeCCCeEEEEECCCCCceeeeeeccccccccc---------CcceEEEEECCCCCcEEEEEeCCC
Confidence 467899999998776655 788888765 33333321111011000 1113456666666 4555555566
Q ss_pred eEEEEcC-CCccccCCCcCCCCCC--C----ceeecCCccEEEEcCCCCEEEEEC-CcEEEEcCC--CeEEEEEeeccC-
Q psy8782 197 IIKTTLG-DGHQRPLDCKDCNGEA--G----PKQRLLAPVALATAPDGSLFVGDF-NLIRRIMTD--GTVRTVVRLNVT- 265 (482)
Q Consensus 197 ~i~~~~g-~G~~~~~~~~~~~g~~--~----~~~~l~~P~giavd~~G~lyv~D~-~~I~~i~~~--G~v~~~~g~~~~- 265 (482)
.|..+.- ++...........+.. . ..........+++.|+|.++++-. +.|+.++.. ++....+.....
T Consensus 250 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~ 329 (447)
T 3dw8_B 250 TIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYL 329 (447)
T ss_dssp CEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEESCGGG
T ss_pred eEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceeeccccc
Confidence 5655532 2221000000000000 0 000011456899999997766544 788888753 443332221110
Q ss_pred -----------CCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEec
Q psy8782 266 -----------RVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVG 313 (482)
Q Consensus 266 -----------~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG 313 (482)
.......++++| ++...++-...+.|+.++. .++....+.+
T Consensus 330 ~~~l~~~~~~~~i~~~~~~~~s~-~~~~l~s~s~dg~v~iwd~------~~~~~~~~~~ 381 (447)
T 3dw8_B 330 RSKLCSLYENDCIFDKFECCWNG-SDSVVMTGSYNNFFRMFDR------NTKRDITLEA 381 (447)
T ss_dssp TTTHHHHHHTSGGGCCCCEEECT-TSSEEEEECSTTEEEEEET------TTCCEEEEEC
T ss_pred cccccccccccccccceEEEECC-CCCEEEEeccCCEEEEEEc------CCCcceeeee
Confidence 000123489999 7766677778899999986 3455544443
No 225
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=93.62 E-value=5.5 Score=38.48 Aligned_cols=110 Identities=14% Similarity=0.083 Sum_probs=65.4
Q ss_pred ceEEEecCCCeEEEEcCCCeEEEEc-CCCccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC--CcEEEEcC-C
Q psy8782 178 SGILQKGDGSNIYLKNKPRIIKTTL-GDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF--NLIRRIMT-D 253 (482)
Q Consensus 178 ~gi~~~~~g~~lyi~d~~~~i~~~~-g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~--~~I~~i~~-~ 253 (482)
..+++.+++ .+..+..++.|++.. .+++....... .....-..-..|++.|+|.++++-. +.|+.++. +
T Consensus 86 ~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~------~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~ 158 (344)
T 4gqb_B 86 ADLTWVGER-GILVASDSGAVELWELDENETLIVSKF------CKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ 158 (344)
T ss_dssp EEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEE------EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred EEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeec------cccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence 455666653 566666666666653 22221100000 0001112356899999998777655 78999984 5
Q ss_pred CeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEec
Q psy8782 254 GTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKN 297 (482)
Q Consensus 254 G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~ 297 (482)
++....+.. .-.....+++++.+..++++-...+.|+.++.
T Consensus 159 ~~~~~~~~~---h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~ 199 (344)
T 4gqb_B 159 QVVLSSYRA---HAAQVTCVAASPHKDSVFLSCSEDNRILLWDT 199 (344)
T ss_dssp TEEEEEECC---CSSCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred CcEEEEEcC---cCCceEEEEecCCCCCceeeeccccccccccc
Confidence 666554422 22345788999855578888777888998885
No 226
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=93.60 E-value=5.5 Score=38.42 Aligned_cols=190 Identities=8% Similarity=-0.066 Sum_probs=104.6
Q ss_pred CceEEEEcCCCcEEEEeC--CcEEEEcC-CCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCCCe
Q psy8782 121 APVALATAPDGSLFVGDF--NLIRRIMT-DGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKPRI 197 (482)
Q Consensus 121 ~P~glavd~~G~lyvaD~--~~Irki~~-~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~~~ 197 (482)
....+++.|+|.++++-. +.|+..+. .++......... .....+.+.+++..+.....++.
T Consensus 66 ~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~----------------~~v~~~~~sp~g~~lasg~~d~~ 129 (354)
T 2pbi_B 66 KVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPC----------------TWVMACAYAPSGCAIACGGLDNK 129 (354)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSS----------------SCCCEEEECTTSSEEEEESTTSE
T ss_pred eEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCC----------------CCEEEEEECCCCCEEEEeeCCCC
Confidence 346788888888666554 67777764 344332221110 11345666677766666666666
Q ss_pred EEEEcCCCccccCCCcCCCCCCC----ceeecCCccEEEEcCCCCEEEEEC--CcEEEEcC-CCeEEEEEeeccCCCCce
Q psy8782 198 IKTTLGDGHQRPLDCKDCNGEAG----PKQRLLAPVALATAPDGSLFVGDF--NLIRRIMT-DGTVRTVVRLNVTRVAYR 270 (482)
Q Consensus 198 i~~~~g~G~~~~~~~~~~~g~~~----~~~~l~~P~giavd~~G~lyv~D~--~~I~~i~~-~G~v~~~~g~~~~~~~~p 270 (482)
+....-..... ..... ....-.....+++.+++..+++-. +.|+.++. +++....+... -...
T Consensus 130 i~v~~~~~~~~-------~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h---~~~v 199 (354)
T 2pbi_B 130 CSVYPLTFDKN-------ENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGH---GADV 199 (354)
T ss_dssp EEEEECCCCTT-------CCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECC---SSCE
T ss_pred EEEEEEecccc-------ccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCC---CCCe
Confidence 66553211000 00000 111222346788888886555444 78888884 56655444221 1234
Q ss_pred eeEEEeCC-CCeEEEEeCCCCEEEEEecCCccCCCCCcE-EEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCC
Q psy8782 271 YHIAYSPL-DGTLYISDPESHQILRVKNAMDFSAPDYNV-EPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSAD 348 (482)
Q Consensus 271 ~giavd~~-~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~-~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~ 348 (482)
..+++.|. ++.++++-...+.|+.++. .++.. ..+.+. -.....+++.|+
T Consensus 200 ~~~~~~~~~~g~~l~sgs~Dg~v~~wd~------~~~~~~~~~~~h----------------------~~~v~~v~~~p~ 251 (354)
T 2pbi_B 200 LCLDLAPSETGNTFVSGGCDKKAMVWDM------RSGQCVQAFETH----------------------ESDVNSVRYYPS 251 (354)
T ss_dssp EEEEECCCSSCCEEEEEETTSCEEEEET------TTCCEEEEECCC----------------------SSCEEEEEECTT
T ss_pred EEEEEEeCCCCCEEEEEeCCCeEEEEEC------CCCcEEEEecCC----------------------CCCeEEEEEeCC
Confidence 56777663 3567777677788999985 23432 222110 123467899999
Q ss_pred CcEEEEECC-C-EEEEcC
Q psy8782 349 NILYFADGT-N-IRMVDR 364 (482)
Q Consensus 349 G~lyvaD~~-n-Ir~i~~ 364 (482)
|.++++-+. . ||..|.
T Consensus 252 ~~~l~s~s~D~~v~lwd~ 269 (354)
T 2pbi_B 252 GDAFASGSDDATCRLYDL 269 (354)
T ss_dssp SSEEEEEETTSCEEEEET
T ss_pred CCEEEEEeCCCeEEEEEC
Confidence 887665443 3 888885
No 227
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=93.46 E-value=4.2 Score=43.26 Aligned_cols=68 Identities=7% Similarity=-0.039 Sum_probs=38.9
Q ss_pred cEEEEcCCCCEEEEEC------CcEEEEcC-CCeEEEEEeeccCCCC--ceeeEEEeCCCCeEEEE-eCCCC------EE
Q psy8782 229 VALATAPDGSLFVGDF------NLIRRIMT-DGTVRTVVRLNVTRVA--YRYHIAYSPLDGTLYIS-DPESH------QI 292 (482)
Q Consensus 229 ~giavd~~G~lyv~D~------~~I~~i~~-~G~v~~~~g~~~~~~~--~p~giavd~~~g~lyVa-D~~n~------~I 292 (482)
..+++.|||.+++.-. ..|+.++. +|+...+......... .+..++++|++..|+++ ....+ +|
T Consensus 258 ~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l 337 (723)
T 1xfd_A 258 TMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHI 337 (723)
T ss_dssp EEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEE
T ss_pred EEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEE
Confidence 4588999997664432 35778875 4666555432111111 12478999944456664 33333 67
Q ss_pred EEEe
Q psy8782 293 LRVK 296 (482)
Q Consensus 293 ~~~~ 296 (482)
+.++
T Consensus 338 ~~~d 341 (723)
T 1xfd_A 338 TVSS 341 (723)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 7776
No 228
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=93.21 E-value=1.4 Score=43.92 Aligned_cols=114 Identities=14% Similarity=0.077 Sum_probs=68.4
Q ss_pred ccEEEEcC-CCCEE-EEEC-CcEEEEcCC-CeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCC
Q psy8782 228 PVALATAP-DGSLF-VGDF-NLIRRIMTD-GTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSA 303 (482)
Q Consensus 228 P~giavd~-~G~ly-v~D~-~~I~~i~~~-G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~ 303 (482)
-..|+++| ++++. .+.. +.|+.++.+ +....+... ...-..-..|+++|.++.++++-...+.|+.++.
T Consensus 122 V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~-~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~------ 194 (435)
T 4e54_B 122 ATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKG-IGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDF------ 194 (435)
T ss_dssp EEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECC-CSSSCCCCEEEECSSCTTEEEEECSSSCEEEEET------
T ss_pred EEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEc-cCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeec------
Confidence 46789988 45544 4444 789888854 332222211 1112235789999867777888777888999984
Q ss_pred CCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEECCC--EEEEcCCCc
Q psy8782 304 PDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADGTN--IRMVDRDGI 367 (482)
Q Consensus 304 ~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~~n--Ir~i~~~G~ 367 (482)
..+....+.... . .-.....+++++++.++++-... |+..+.++.
T Consensus 195 ~~~~~~~~~~~~-------------~------~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~ 241 (435)
T 4e54_B 195 KGNILRVFASSD-------------T------INIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK 241 (435)
T ss_dssp TSCEEEEEECCS-------------S------CSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC
T ss_pred cCCceeEEeccC-------------C------CCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc
Confidence 223344443211 0 01223568899998877765433 888876653
No 229
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=93.07 E-value=6.9 Score=38.03 Aligned_cols=150 Identities=14% Similarity=0.061 Sum_probs=86.5
Q ss_pred CceEEEecCCCeEEEEcCCCeEEEEcCC-CccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC--CcEEEEcCC
Q psy8782 177 PSGILQKGDGSNIYLKNKPRIIKTTLGD-GHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF--NLIRRIMTD 253 (482)
Q Consensus 177 P~gi~~~~~g~~lyi~d~~~~i~~~~g~-G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~--~~I~~i~~~ 253 (482)
...+.+++++..++....++.+..+.-. +..... .... ......++.++|.++++-. +.|+.++..
T Consensus 59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~----------~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 127 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKM----------LKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSN 127 (420)
T ss_dssp CTTCEEEEEETTEEEEEETTEEEEEECCSEETTTT----------SCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTT
T ss_pred ccceeeeecCCeEEEEEcCCcEEEEEecccceeeE----------EecC-CceEEEEEecCCCEEEEEECCCCEEEEeCC
Confidence 4567788888888887777777666432 221110 0000 1122335567887665544 688888855
Q ss_pred -CeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCc-EEEEecCCcccCCCCCCccCCCcc
Q psy8782 254 -GTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYN-VEPAVGSGERCLPGDEAHCGDGAP 331 (482)
Q Consensus 254 -G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~-~~~vaG~g~~~~~g~~~~~gdg~~ 331 (482)
++....+ .........++++| ++.+.++-...+.|+.++.. ++. +..+.+
T Consensus 128 ~~~~~~~~---~~h~~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~------~~~~~~~~~~------------------ 179 (420)
T 3vl1_A 128 FNLQREID---QAHVSEITKLKFFP-SGEALISSSQDMQLKIWSVK------DGSNPRTLIG------------------ 179 (420)
T ss_dssp SCEEEEET---TSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETT------TCCCCEEEEC------------------
T ss_pred Ccceeeec---ccccCccEEEEECC-CCCEEEEEeCCCeEEEEeCC------CCcCceEEcC------------------
Confidence 4443332 22334567899999 67666666677889999852 222 222221
Q ss_pred ccccccCCcceEEEeCCCcEEEE-ECCC-EEEEcC-CCcEE
Q psy8782 332 ARDAKLAYPKGVAVSADNILYFA-DGTN-IRMVDR-DGIVT 369 (482)
Q Consensus 332 a~~a~l~~P~giavd~~G~lyva-D~~n-Ir~i~~-~G~i~ 369 (482)
.-.....+++.+++.++++ .... |+..|. .+...
T Consensus 180 ----h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 216 (420)
T 3vl1_A 180 ----HRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTI 216 (420)
T ss_dssp ----CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEE
T ss_pred ----CCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCcee
Confidence 1123567889988875554 4444 888874 45443
No 230
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=92.99 E-value=2.1 Score=45.57 Aligned_cols=145 Identities=14% Similarity=0.024 Sum_probs=73.1
Q ss_pred CceEEEEcCCCcEEEEeC-CcEEEEcCC-CeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCC---
Q psy8782 121 APVALATAPDGSLFVGDF-NLIRRIMTD-GTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKP--- 195 (482)
Q Consensus 121 ~P~glavd~~G~lyvaD~-~~Irki~~~-G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~--- 195 (482)
.|..+++.|||.+.+++. +.|+.++.+ |+...+....... ......+.+++||..|..+...
T Consensus 18 ~~~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~~~~~~~~~~-------------~~~v~~~~~SpDg~~l~~~~~~~~~ 84 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIE-------------SLRAIRYEISPDREYALFSYNVEPI 84 (723)
T ss_dssp CCCCCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTT-------------TTTCSEEEECTTSSEEEEEESCCCC
T ss_pred cccccEEcCCCcEEEEeCCCCEEEEECCCCcEEEEecccccc-------------ccccceEEECCCCCEEEEEecCccc
Confidence 366777888888554443 677777764 5544444221100 0124566777777666554321
Q ss_pred ------CeEEEEc-CCCccccCCCcCCCCCCCceeecCCccEEEEcCCC-CEEEEECCcEEEEcCC-CeEEEEEeeccCC
Q psy8782 196 ------RIIKTTL-GDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDG-SLFVGDFNLIRRIMTD-GTVRTVVRLNVTR 266 (482)
Q Consensus 196 ------~~i~~~~-g~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G-~lyv~D~~~I~~i~~~-G~v~~~~g~~~~~ 266 (482)
..+.++. .+|+...... ....-..+..+++.||| .|.++..+.|+.++.+ |+...+...+...
T Consensus 85 ~~~~~~~~i~~~d~~~~~~~~l~~--------~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~~~~~~~~ 156 (723)
T 1xfd_A 85 YQHSYTGYYVLSKIPHGDPQSLDP--------PEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEG 156 (723)
T ss_dssp SSSCCCSEEEEEESSSCCCEECCC--------TTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTT
T ss_pred eeecceeeEEEEECCCCceEeccC--------CccccccccccEECCCCCEEEEEECCeEEEEECCCCceEEEecCCCCC
Confidence 2333332 2232211100 00000124567788888 4555555788888855 4444433221111
Q ss_pred ---------------CCceeeEEEeCCCCeEEEEe
Q psy8782 267 ---------------VAYRYHIAYSPLDGTLYISD 286 (482)
Q Consensus 267 ---------------~~~p~giavd~~~g~lyVaD 286 (482)
+....+++++|++..|+++.
T Consensus 157 ~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~ 191 (723)
T 1xfd_A 157 VIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAA 191 (723)
T ss_dssp TEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred ceECcccceeEEEEeccCcceEEECCCCCEEEEEE
Confidence 22346899999444566654
No 231
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=92.93 E-value=6.7 Score=37.52 Aligned_cols=111 Identities=20% Similarity=0.076 Sum_probs=62.6
Q ss_pred ccEEEEcCCCCEEEEEC--CcEEEEcCCC-eEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCC
Q psy8782 228 PVALATAPDGSLFVGDF--NLIRRIMTDG-TVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAP 304 (482)
Q Consensus 228 P~giavd~~G~lyv~D~--~~I~~i~~~G-~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~ 304 (482)
...|++.|+|.+.++-. +.|+.++.++ ......-........-..++++| ++.+.++-...+.|+.++. .
T Consensus 19 v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~s~D~~v~iw~~------~ 91 (345)
T 3fm0_A 19 CWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSP-CGNYLASASFDATTCIWKK------N 91 (345)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECT-TSSEEEEEETTSCEEEEEE------C
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECC-CCCEEEEEECCCcEEEEEc------c
Confidence 45799999998776655 6788887543 32211111112223457899999 7766666555666666653 1
Q ss_pred CCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEEC-CC-EEEEcC
Q psy8782 305 DYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADG-TN-IRMVDR 364 (482)
Q Consensus 305 ~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~-~n-Ir~i~~ 364 (482)
.+..+.+.- ..+ .-.....+++.++|+++++-+ .. |++.+.
T Consensus 92 ~~~~~~~~~-----------~~~--------h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~ 134 (345)
T 3fm0_A 92 QDDFECVTT-----------LEG--------HENEVKSVAWAPSGNLLATCSRDKSVWVWEV 134 (345)
T ss_dssp CC-EEEEEE-----------ECC--------CSSCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred CCCeEEEEE-----------ccC--------CCCCceEEEEeCCCCEEEEEECCCeEEEEEC
Confidence 222221110 000 012356789999998766544 33 777663
No 232
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=92.56 E-value=6.6 Score=37.02 Aligned_cols=158 Identities=11% Similarity=-0.051 Sum_probs=79.4
Q ss_pred CceEEEEcC-CCcEEEEeC--CcEEEEcCC-CeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCCC
Q psy8782 121 APVALATAP-DGSLFVGDF--NLIRRIMTD-GTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKPR 196 (482)
Q Consensus 121 ~P~glavd~-~G~lyvaD~--~~Irki~~~-G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~~ 196 (482)
....+++.| +++++++-. +.|+.++.. ++.......-. + -......+.+.+++..++.+..++
T Consensus 117 ~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~------------~~~~v~~~~~~~~~~~l~~~~~dg 183 (366)
T 3k26_A 117 AINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVE-G------------HRDEVLSADYDLLGEKIMSCGMDH 183 (366)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTT-S------------CSSCEEEEEECTTSSEEEEEETTS
T ss_pred cEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccc-c------------ccCceeEEEECCCCCEEEEecCCC
Confidence 467788888 777655543 788888754 55444332100 0 011235666777776677666666
Q ss_pred eEEEEcCC-Ccccc-------CCCcCCC-------CCCC----ceeecCCccEEEEcCCCCEEEEEC--CcEEEEcCCC-
Q psy8782 197 IIKTTLGD-GHQRP-------LDCKDCN-------GEAG----PKQRLLAPVALATAPDGSLFVGDF--NLIRRIMTDG- 254 (482)
Q Consensus 197 ~i~~~~g~-G~~~~-------~~~~~~~-------g~~~----~~~~l~~P~giavd~~G~lyv~D~--~~I~~i~~~G- 254 (482)
.+..+.-. ++... +...... .... ....-.....++++ ++++++-. +.|+.++...
T Consensus 184 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~ 261 (366)
T 3k26_A 184 SLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKM 261 (366)
T ss_dssp CEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESST
T ss_pred CEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCc
Confidence 66655322 21100 0000000 0000 00011233456666 44555544 6777776322
Q ss_pred --------------eEEEEEeeccCCCCceeeEEEeCCC--CeEEEEeCCCCEEEEEec
Q psy8782 255 --------------TVRTVVRLNVTRVAYRYHIAYSPLD--GTLYISDPESHQILRVKN 297 (482)
Q Consensus 255 --------------~v~~~~g~~~~~~~~p~giavd~~~--g~lyVaD~~n~~I~~~~~ 297 (482)
.....+. ..-.....++++| + +.+.++-...+.|+.++.
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~s~-~~~~~~l~~~~~dg~i~vwd~ 316 (366)
T 3k26_A 262 EDDIDKIKPSESNVTILGRFD---YSQCDIWYMRFSM-DFWQKMLALGNQVGKLYVWDL 316 (366)
T ss_dssp TCCGGGCCTTCCCEEEEEEEE---CSSCCSSCCCCEE-CTTSSEEEEECTTSCEEEEEC
T ss_pred cccccccccCCcchheecccc---ccCCcEEEEEEcC-CCCCcEEEEEecCCcEEEEEC
Confidence 1111111 1122355678888 5 777776677788888885
No 233
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=92.49 E-value=8.3 Score=37.46 Aligned_cols=233 Identities=11% Similarity=-0.007 Sum_probs=120.8
Q ss_pred ccCCCeEEecCCceEEEeeCCCeEEEEeccCccCCCCCcCCCCCCcCcccCCCceEEEEcCCCcEEEEe-C-CcEEEEcC
Q psy8782 69 NFHEGILQKGDGSNIYLKNKPRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGD-F-NLIRRIMT 146 (482)
Q Consensus 69 ~~~~gil~~gdG~~~~~~~~~~~i~tv~G~G~~~~~~~~~~~G~~~~~~~l~~P~glavd~~G~lyvaD-~-~~Irki~~ 146 (482)
+....+.+..+|+.+..-...+.|....-...... .+ . ... ......++.++|+++++- . +.|+.++.
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~-~~--~------~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 126 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGS-KM--L------KRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDS 126 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETT-TT--S------CSC-CEEEEEEECSSSCEEEEEETTSCEEEECT
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEeccccee-eE--E------ecC-CceEEEEEecCCCEEEEEECCCCEEEEeC
Confidence 44456666666666655555555554432111100 00 0 000 122233556788765544 3 67888876
Q ss_pred C-CeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCCCeEEEEcC-CCccccCCCcCCCCCCCceee
Q psy8782 147 D-GTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKPRIIKTTLG-DGHQRPLDCKDCNGEAGPKQR 224 (482)
Q Consensus 147 ~-G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~~~i~~~~g-~G~~~~~~~~~~~g~~~~~~~ 224 (482)
+ +......... ......+.+.+++..++.+..++.+..+.- +++.... ....
T Consensus 127 ~~~~~~~~~~~h----------------~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~----------~~~h 180 (420)
T 3vl1_A 127 NFNLQREIDQAH----------------VSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRT----------LIGH 180 (420)
T ss_dssp TSCEEEEETTSS----------------SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEE----------EECC
T ss_pred CCcceeeecccc----------------cCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceE----------EcCC
Confidence 4 4443322110 011355667777766666666666666542 2221100 1112
Q ss_pred cCCccEEEEcCCCCEEEEEC--CcEEEEcC-CCeEEEEEeeccCCC---------------------CceeeEEEeCCCC
Q psy8782 225 LLAPVALATAPDGSLFVGDF--NLIRRIMT-DGTVRTVVRLNVTRV---------------------AYRYHIAYSPLDG 280 (482)
Q Consensus 225 l~~P~giavd~~G~lyv~D~--~~I~~i~~-~G~v~~~~g~~~~~~---------------------~~p~giavd~~~g 280 (482)
-.....+++.|+|.++++-. +.|+.++. +++....+....... .....++++| ++
T Consensus 181 ~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~ 259 (420)
T 3vl1_A 181 RATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT-YG 259 (420)
T ss_dssp SSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC-TT
T ss_pred CCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC-CC
Confidence 23456889999987655544 67888884 466555543211111 2223455677 77
Q ss_pred eEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCc-EEE-EECCC
Q psy8782 281 TLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNI-LYF-ADGTN 358 (482)
Q Consensus 281 ~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~-lyv-aD~~n 358 (482)
.+.++-...+.|+.++. .++......-. ..-.....+++++++. +++ +....
T Consensus 260 ~~l~~~~~dg~i~i~d~------~~~~~~~~~~~--------------------~~~~~v~~~~~~~~~~~~l~~g~~dg 313 (420)
T 3vl1_A 260 KYVIAGHVSGVITVHNV------FSKEQTIQLPS--------------------KFTCSCNSLTVDGNNANYIYAGYENG 313 (420)
T ss_dssp EEEEEEETTSCEEEEET------TTCCEEEEECC--------------------TTSSCEEEEEECSSCTTEEEEEETTS
T ss_pred CEEEEEcCCCeEEEEEC------CCCceeEEccc--------------------ccCCCceeEEEeCCCCCEEEEEeCCC
Confidence 66676666788888885 23332221100 0012456899999887 444 44434
Q ss_pred -EEEEcC
Q psy8782 359 -IRMVDR 364 (482)
Q Consensus 359 -Ir~i~~ 364 (482)
|++.+.
T Consensus 314 ~i~vwd~ 320 (420)
T 3vl1_A 314 MLAQWDL 320 (420)
T ss_dssp EEEEEET
T ss_pred eEEEEEc
Confidence 888875
No 234
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=91.61 E-value=9 Score=36.02 Aligned_cols=70 Identities=16% Similarity=0.036 Sum_probs=47.9
Q ss_pred CccEEEEcC-CCCEEEEEC--CcEEEEcC-CCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEec
Q psy8782 227 APVALATAP-DGSLFVGDF--NLIRRIMT-DGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKN 297 (482)
Q Consensus 227 ~P~giavd~-~G~lyv~D~--~~I~~i~~-~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~ 297 (482)
....+++.| ++.++++-. +.|+.++. +++....+......-.....++++| ++.+.++-...+.|+.++.
T Consensus 117 ~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~ 190 (366)
T 3k26_A 117 AINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL-LGEKIMSCGMDHSLKLWRI 190 (366)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECT-TSSEEEEEETTSCEEEEES
T ss_pred cEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECC-CCCEEEEecCCCCEEEEEC
Confidence 457889998 787666554 78999984 4666555432122334578899999 6666666666788888885
No 235
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=91.35 E-value=15 Score=41.13 Aligned_cols=129 Identities=12% Similarity=-0.058 Sum_probs=73.1
Q ss_pred CccEEEEc-CCCC-EEEEECCcEEEEcCC-CeEEEEEeeccCCCC-ceeeEEEeCCCCeEEEEeCCCCEEE-EEecCCcc
Q psy8782 227 APVALATA-PDGS-LFVGDFNLIRRIMTD-GTVRTVVRLNVTRVA-YRYHIAYSPLDGTLYISDPESHQIL-RVKNAMDF 301 (482)
Q Consensus 227 ~P~giavd-~~G~-lyv~D~~~I~~i~~~-G~v~~~~g~~~~~~~-~p~giavd~~~g~lyVaD~~n~~I~-~~~~~~~~ 301 (482)
.+..+++. |||. |.++....|+.++.+ +....+. .... ....++++ ++..|+++.. ..+++ .++.
T Consensus 297 ~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~~~~----~~~~~~~~~~~~s-dg~~l~~~s~-~~~l~~~~d~---- 366 (1045)
T 1k32_A 297 SKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVP----EPLRIRYVRRGGD-TKVAFIHGTR-EGDFLGIYDY---- 366 (1045)
T ss_dssp GGGEEEEEECGGGCEEEEETTEEEEECTTSSBEEECS----CCSCEEEEEECSS-SEEEEEEEET-TEEEEEEEET----
T ss_pred ccceeeecCCCCCEEEEEEcCEEEEEcCCCCceEEcc----CCCcceEEeeeEc-CCCeEEEEEC-CCceEEEEEC----
Confidence 46789999 9985 666666788888754 4443321 1112 34566666 3445555443 56777 7774
Q ss_pred CCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCc-EEEEECCC-EEEEcC-CCcEEEEEcCCCCC
Q psy8782 302 SAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNI-LYFADGTN-IRMVDR-DGIVTTVIGNHMHK 378 (482)
Q Consensus 302 ~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~-lyvaD~~n-Ir~i~~-~G~i~ti~G~~~~~ 378 (482)
..+....+.+ .-..+..++++++|. |+++...+ |++++. +|.+..+...+...
T Consensus 367 --~~~~~~~l~~----------------------~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~ 422 (1045)
T 1k32_A 367 --RTGKAEKFEE----------------------NLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAM 422 (1045)
T ss_dssp --TTCCEEECCC----------------------CCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSC
T ss_pred --CCCCceEecC----------------------CccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCC
Confidence 2233332221 012457889999987 44555544 888886 67777666222211
Q ss_pred CCCCcCCCCce
Q psy8782 379 SHWKPIPCEGT 389 (482)
Q Consensus 379 ~~~~~~~~dg~ 389 (482)
.....+++||.
T Consensus 423 v~~~~~SpDG~ 433 (1045)
T 1k32_A 423 ITDFTISDNSR 433 (1045)
T ss_dssp CCCEEECTTSC
T ss_pred ccceEECCCCC
Confidence 12344566774
No 236
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=91.14 E-value=0.96 Score=43.73 Aligned_cols=66 Identities=9% Similarity=-0.023 Sum_probs=38.7
Q ss_pred CccEEEEcCCCCEEEEEC--CcEEEEcCCC-e----EEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEec
Q psy8782 227 APVALATAPDGSLFVGDF--NLIRRIMTDG-T----VRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKN 297 (482)
Q Consensus 227 ~P~giavd~~G~lyv~D~--~~I~~i~~~G-~----v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~ 297 (482)
....+++.|+|.++++-. +.|+.++... . ...+ ...-.....++++| ++.++++-...+.|+.++.
T Consensus 57 ~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~----~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~ 129 (377)
T 3dwl_C 57 IVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVL----LRLNRAATFVRWSP-NEDKFAVGSGARVISVCYF 129 (377)
T ss_dssp CEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEEC----CCCSSCEEEEECCT-TSSCCEEEESSSCEEECCC
T ss_pred eEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEe----cccCCceEEEEECC-CCCEEEEEecCCeEEEEEE
Confidence 456889999986555544 6788887543 2 2221 11223467899999 6655555555677877774
No 237
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=91.08 E-value=10 Score=35.76 Aligned_cols=112 Identities=10% Similarity=0.039 Sum_probs=58.1
Q ss_pred ceEEEecC--CCeEEEEcCCCeEEEEcCCCc-cccCCCcCCCCCCCceeecCCccEEEEcC-------------CCCEEE
Q psy8782 178 SGILQKGD--GSNIYLKNKPRIIKTTLGDGH-QRPLDCKDCNGEAGPKQRLLAPVALATAP-------------DGSLFV 241 (482)
Q Consensus 178 ~gi~~~~~--g~~lyi~d~~~~i~~~~g~G~-~~~~~~~~~~g~~~~~~~l~~P~giavd~-------------~G~lyv 241 (482)
..+.+.++ +..++....++.+..+.-... ..... .....-.....+++.| ++.+++
T Consensus 105 ~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~--------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~ 176 (379)
T 3jrp_A 105 NSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI--------IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFV 176 (379)
T ss_dssp EEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEE--------EEECCTTCEEEEEECCCC----------CTTCEEE
T ss_pred EEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeE--------EecCCCCceEEEEEcCccccccccccCCCCCCEEE
Confidence 45556665 555666666666665532211 00000 0011112345677777 576655
Q ss_pred EEC--CcEEEEcCC-C-eEEEEEeeccCCCCceeeEEEeCCC--CeEEEEeCCCCEEEEEec
Q psy8782 242 GDF--NLIRRIMTD-G-TVRTVVRLNVTRVAYRYHIAYSPLD--GTLYISDPESHQILRVKN 297 (482)
Q Consensus 242 ~D~--~~I~~i~~~-G-~v~~~~g~~~~~~~~p~giavd~~~--g~lyVaD~~n~~I~~~~~ 297 (482)
+-. +.|+.++.. + ........-...-.....++++|.. +.++++-...+.|+.++.
T Consensus 177 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~ 238 (379)
T 3jrp_A 177 TGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ 238 (379)
T ss_dssp EEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred EEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeC
Confidence 554 678777632 2 2211111112223456789999932 777777666778888875
No 238
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=91.08 E-value=9.9 Score=35.48 Aligned_cols=192 Identities=11% Similarity=0.000 Sum_probs=101.1
Q ss_pred eEEEEcCCCcEEEEeC--CcEEEEcCC-CeEE-EEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCCCeE
Q psy8782 123 VALATAPDGSLFVGDF--NLIRRIMTD-GTVR-TVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKPRII 198 (482)
Q Consensus 123 ~glavd~~G~lyvaD~--~~Irki~~~-G~v~-ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~~~i 198 (482)
..+++.++++++++-. +.|+..+.+ |+.. ++.+.. ..-..+.+.+++..+..+..++.+
T Consensus 59 ~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~-----------------~~v~~~~~~~~~~~l~sgs~D~~v 121 (304)
T 2ynn_A 59 RAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHP-----------------DYIRSIAVHPTKPYVLSGSDDLTV 121 (304)
T ss_dssp EEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCS-----------------SCEEEEEECSSSSEEEEEETTSCE
T ss_pred EEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCC-----------------CcEEEEEEcCCCCEEEEECCCCeE
Confidence 5677788888665544 678888753 5433 332211 012455666666555555556666
Q ss_pred EEEcC-CCccccCCCcCCCCCCCceeecCCccEEEEcC-CCCEEEEEC--CcEEEEcCC-Ce-EEEEEeeccCCCCceee
Q psy8782 199 KTTLG-DGHQRPLDCKDCNGEAGPKQRLLAPVALATAP-DGSLFVGDF--NLIRRIMTD-GT-VRTVVRLNVTRVAYRYH 272 (482)
Q Consensus 199 ~~~~g-~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~-~G~lyv~D~--~~I~~i~~~-G~-v~~~~g~~~~~~~~p~g 272 (482)
+...- ++..... . ....-.....+++.| ++.++++-. +.|+.++.. +. ..++.. ........
T Consensus 122 ~lWd~~~~~~~~~---~------~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~---~~~~~v~~ 189 (304)
T 2ynn_A 122 KLWNWENNWALEQ---T------FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT---GQERGVNY 189 (304)
T ss_dssp EEEEGGGTTEEEE---E------ECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEEC---CCTTCEEE
T ss_pred EEEECCCCcchhh---h------hcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceecc---CCcCcEEE
Confidence 65532 1111000 0 001112346788888 566665544 678888743 22 122211 11122345
Q ss_pred EEEeCC-CCeEEEEeCCCCEEEEEecCCccCCCCCc-EEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCc
Q psy8782 273 IAYSPL-DGTLYISDPESHQILRVKNAMDFSAPDYN-VEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNI 350 (482)
Q Consensus 273 iavd~~-~g~lyVaD~~n~~I~~~~~~~~~~~~~g~-~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~ 350 (482)
+++.|. ++.+.++-...+.|+.++. .++. +.++.|. ......+++.+++.
T Consensus 190 ~~~~~~~~~~~l~s~s~D~~i~iWd~------~~~~~~~~~~~h----------------------~~~v~~~~~~p~~~ 241 (304)
T 2ynn_A 190 VDYYPLPDKPYMITASDDLTIKIWDY------QTKSCVATLEGH----------------------MSNVSFAVFHPTLP 241 (304)
T ss_dssp EEECCSTTCCEEEEEETTSEEEEEET------TTTEEEEEEECC----------------------SSCEEEEEECSSSS
T ss_pred EEEEEcCCCCEEEEEcCCCeEEEEeC------CCCccceeeCCC----------------------CCCEEEEEECCCCC
Confidence 666552 4566677677888999985 2333 2222221 12345688889888
Q ss_pred EEEEECC-C-EEEEcC-CCcEEEE
Q psy8782 351 LYFADGT-N-IRMVDR-DGIVTTV 371 (482)
Q Consensus 351 lyvaD~~-n-Ir~i~~-~G~i~ti 371 (482)
++++-+. . ||..|. ++++...
T Consensus 242 ~l~s~s~Dg~i~iWd~~~~~~~~~ 265 (304)
T 2ynn_A 242 IIISGSEDGTLKIWNSSTYKVEKT 265 (304)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEE
T ss_pred EEEEEcCCCeEEEEECCCCceeee
Confidence 6665443 3 888875 4554433
No 239
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=90.79 E-value=23 Score=39.20 Aligned_cols=209 Identities=10% Similarity=-0.003 Sum_probs=108.1
Q ss_pred CceEEEEcCCCcEEEEeC--CcEEEEcCCCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCCCeE
Q psy8782 121 APVALATAPDGSLFVGDF--NLIRRIMTDGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKPRII 198 (482)
Q Consensus 121 ~P~glavd~~G~lyvaD~--~~Irki~~~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~~~i 198 (482)
....|+++|+|.+.++-. +.|+.++..+......-... ..-..+.+.+ +..|..+..++.+
T Consensus 19 ~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~----------------~~V~~l~fsp-g~~L~S~s~D~~v 81 (902)
T 2oaj_A 19 KPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDR----------------SAIKEMRFVK-GIYLVVINAKDTV 81 (902)
T ss_dssp CEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSC----------------CCEEEEEEET-TTEEEEEETTCEE
T ss_pred CcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCC----------------CCEEEEEEcC-CCEEEEEECcCeE
Confidence 467899999998766544 68888876543222111000 0114555666 4445555556666
Q ss_pred EEEcC-CCccccCCCcCCCCCCCceeecCCccEEEEcCCCCEE-EEEC-CcEEEEcCCC-eEEEEEe--------eccCC
Q psy8782 199 KTTLG-DGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLF-VGDF-NLIRRIMTDG-TVRTVVR--------LNVTR 266 (482)
Q Consensus 199 ~~~~g-~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~ly-v~D~-~~I~~i~~~G-~v~~~~g--------~~~~~ 266 (482)
++..- +++... ....-.....++++|+|... ++.. +.|+.++.+. +.....- .....
T Consensus 82 ~lWd~~~~~~~~-----------~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h 150 (902)
T 2oaj_A 82 YVLSLYSQKVLT-----------TVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAAR 150 (902)
T ss_dssp EEEETTTCSEEE-----------EEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSC
T ss_pred EEEECCCCcEEE-----------EEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccC
Confidence 65532 222110 00000134678889988654 4444 7899998654 4322111 00112
Q ss_pred CCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCc-EEEEecCCcccCCCCCCccCCCc-cccccccCCcceEE
Q psy8782 267 VAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYN-VEPAVGSGERCLPGDEAHCGDGA-PARDAKLAYPKGVA 344 (482)
Q Consensus 267 ~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~-~~~vaG~g~~~~~g~~~~~gdg~-~a~~a~l~~P~gia 344 (482)
......|+++|.++.+.++-...+.| .++. ..+. +..+.+......++ ++.. ......-.....++
T Consensus 151 ~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~------~~~~~~~~~~~~~~~g~~~-----~~~~~~~~~~h~~~V~~v~ 218 (902)
T 2oaj_A 151 LSPIVSIQWNPRDIGTVLISYEYVTL-TYSL------VENEIKQSFIYELPPFAPG-----GDFSEKTNEKRTPKVIQSL 218 (902)
T ss_dssp CCCCCEEEEETTEEEEEEEECSSCEE-EEET------TTTEEEEEECCCBCTTCCC-----STTCCCTTSCBCCCEEEEE
T ss_pred CCCeEEEEEccCCCCEEEEEeCCCcE-EEEC------CCCceEEEEecccCCcCCC-----cccccccccccCCCeEEEE
Confidence 23457899999545566666667788 8885 2333 23332220000000 0000 00011113467899
Q ss_pred EeCCCcEEEEECC-C-EEEEcC-CCcEE
Q psy8782 345 VSADNILYFADGT-N-IRMVDR-DGIVT 369 (482)
Q Consensus 345 vd~~G~lyvaD~~-n-Ir~i~~-~G~i~ 369 (482)
+.++|.++++-+. + |+..|. +|+..
T Consensus 219 fspdg~~lasgs~Dg~i~lWd~~~g~~~ 246 (902)
T 2oaj_A 219 YHPNSLHIITIHEDNSLVFWDANSGHMI 246 (902)
T ss_dssp ECTTSSEEEEEETTCCEEEEETTTCCEE
T ss_pred EcCCCCEEEEEECCCeEEEEECCCCcEE
Confidence 9999987665443 3 888885 56643
No 240
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=90.79 E-value=10 Score=35.24 Aligned_cols=106 Identities=17% Similarity=0.173 Sum_probs=60.8
Q ss_pred cEEEEcCC--CCEEEEEC--CcEEEEcC-CCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCC
Q psy8782 229 VALATAPD--GSLFVGDF--NLIRRIMT-DGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSA 303 (482)
Q Consensus 229 ~giavd~~--G~lyv~D~--~~I~~i~~-~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~ 303 (482)
..+++.++ ..++++-. ..|+.++. +++....+. ..-.....|+++| ++.++++-...+.|+.++..
T Consensus 175 ~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~---~h~~~v~~~~~s~-~~~~l~s~s~Dg~i~iwd~~----- 245 (340)
T 4aow_A 175 SCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI---GHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLN----- 245 (340)
T ss_dssp EEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEEC---CCSSCEEEEEECT-TSSEEEEEETTCEEEEEETT-----
T ss_pred cceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEec---CCCCcEEEEEECC-CCCEEEEEeCCCeEEEEEec-----
Confidence 34555543 34444433 57777774 445444432 1223457899999 77777776677889988852
Q ss_pred CCCcE-EEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEECCC-EEEEcCCCc
Q psy8782 304 PDYNV-EPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADGTN-IRMVDRDGI 367 (482)
Q Consensus 304 ~~g~~-~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~~n-Ir~i~~~G~ 367 (482)
++.. ..+.+ -.....+++.+++.+..+-..+ |++.+..+.
T Consensus 246 -~~~~~~~~~~-----------------------~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~ 287 (340)
T 4aow_A 246 -EGKHLYTLDG-----------------------GDIINALCFSPNRYWLCAATGPSIKIWDLEGK 287 (340)
T ss_dssp -TTEEEEEEEC-----------------------SSCEEEEEECSSSSEEEEEETTEEEEEETTTT
T ss_pred -cCceeeeecC-----------------------CceEEeeecCCCCceeeccCCCEEEEEECCCC
Confidence 2322 22111 0124567777777776655544 888776543
No 241
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=90.12 E-value=15 Score=36.14 Aligned_cols=114 Identities=11% Similarity=0.064 Sum_probs=68.0
Q ss_pred CccEEEEcCCCC-EEEEEC--CcEEEEcCCC-----eEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecC
Q psy8782 227 APVALATAPDGS-LFVGDF--NLIRRIMTDG-----TVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNA 298 (482)
Q Consensus 227 ~P~giavd~~G~-lyv~D~--~~I~~i~~~G-----~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~ 298 (482)
.+.+|++.+++. ++++-. +.|+.++... ............-.....++++|.++.++++....+.|+.++..
T Consensus 183 ~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~ 262 (430)
T 2xyi_A 183 EGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTR 262 (430)
T ss_dssp CCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETT
T ss_pred CeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECC
Confidence 467899999886 666555 7888887543 11110000012233577899999677888888889999999853
Q ss_pred CccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCc-EEEE-ECCC-EEEEcC
Q psy8782 299 MDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNI-LYFA-DGTN-IRMVDR 364 (482)
Q Consensus 299 ~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~-lyva-D~~n-Ir~i~~ 364 (482)
.... ...+..+. +.-..+..|++.+++. ++++ ...+ |++.+.
T Consensus 263 ~~~~--~~~~~~~~----------------------~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~ 307 (430)
T 2xyi_A 263 NNNT--SKPSHTVD----------------------AHTAEVNCLSFNPYSEFILATGSADKTVALWDL 307 (430)
T ss_dssp CSCS--SSCSEEEE----------------------CCSSCEEEEEECSSCTTEEEEEETTSEEEEEET
T ss_pred CCCC--CcceeEee----------------------cCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeC
Confidence 1000 00111111 1113467899999885 5654 4434 888875
No 242
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=90.07 E-value=6.9 Score=44.06 Aligned_cols=100 Identities=17% Similarity=0.079 Sum_probs=59.8
Q ss_pred CccEEEEcCCCC-EEEEEC-CcEEEEcC-CCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCC---------CCEEEE
Q psy8782 227 APVALATAPDGS-LFVGDF-NLIRRIMT-DGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPE---------SHQILR 294 (482)
Q Consensus 227 ~P~giavd~~G~-lyv~D~-~~I~~i~~-~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~---------n~~I~~ 294 (482)
.+..+++.|||. |+++.. +.|+.++. +|++..+... .......++++|++..|.++... ...|+.
T Consensus 380 ~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~---~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l 456 (1045)
T 1k32_A 380 NVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS---REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHV 456 (1045)
T ss_dssp SEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC---SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEE
T ss_pred ceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccC---CCCCccceEECCCCCeEEEEecCccccccCCCCCeEEE
Confidence 467899999996 445555 68999985 5666666522 12233678999933345554332 357888
Q ss_pred EecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCc-EEEEECC
Q psy8782 295 VKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNI-LYFADGT 357 (482)
Q Consensus 295 ~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~-lyvaD~~ 357 (482)
++. ..+....+.+. ...+..++++++|. ||++...
T Consensus 457 ~d~------~~g~~~~l~~~----------------------~~~~~~~~~spdG~~l~~~s~~ 492 (1045)
T 1k32_A 457 YDM------EGRKIFAATTE----------------------NSHDYAPAFDADSKNLYYLSYR 492 (1045)
T ss_dssp EET------TTTEEEECSCS----------------------SSBEEEEEECTTSCEEEEEESC
T ss_pred EEC------CCCcEEEeeCC----------------------CcccCCceEcCCCCEEEEEecc
Confidence 884 23443322211 12345688999986 6665543
No 243
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=89.99 E-value=12 Score=34.82 Aligned_cols=156 Identities=8% Similarity=-0.086 Sum_probs=80.6
Q ss_pred ceEEEecCCCeEEEEcCCCeEEEEcC-CCc--cccCCCcCCCCCCCceeecCCccEEEEcCCCC--EEEEEC-CcEEEEc
Q psy8782 178 SGILQKGDGSNIYLKNKPRIIKTTLG-DGH--QRPLDCKDCNGEAGPKQRLLAPVALATAPDGS--LFVGDF-NLIRRIM 251 (482)
Q Consensus 178 ~gi~~~~~g~~lyi~d~~~~i~~~~g-~G~--~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~--lyv~D~-~~I~~i~ 251 (482)
..+.+.+++..++.+..++.+..+.- ++. .... .....-.....+++.+++. |+.+.. +.|+.++
T Consensus 15 ~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~---------~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 15 SDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLL---------QSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD 85 (342)
T ss_dssp EEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEE---------EEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred EEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccce---------eeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEE
Confidence 44556666666666666665555431 111 0000 0111223457889999888 555555 7899998
Q ss_pred C-CC-eEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCC
Q psy8782 252 T-DG-TVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDG 329 (482)
Q Consensus 252 ~-~G-~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg 329 (482)
. +. +...+.+. ..-.....++++| +.++++-...+.|+.++... .++......+..... ..
T Consensus 86 ~~~~~~~~~~~~~--~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~----~~~~~~~~~~~~~~~------~~--- 148 (342)
T 1yfq_A 86 LIGSPSFQALTNN--EANLGICRICKYG--DDKLIAASWDGLIEVIDPRN----YGDGVIAVKNLNSNN------TK--- 148 (342)
T ss_dssp SSSSSSEEECBSC--CCCSCEEEEEEET--TTEEEEEETTSEEEEECHHH----HTTBCEEEEESCSSS------SS---
T ss_pred eccCCceEecccc--CCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccc----cccccccccCCeeeE------Ee---
Confidence 6 54 44332210 0223457899998 44445555578888887421 000000000110000 00
Q ss_pred ccccccccCCcceEEEeCCCcEEEEECCC-EEEEcCCC
Q psy8782 330 APARDAKLAYPKGVAVSADNILYFADGTN-IRMVDRDG 366 (482)
Q Consensus 330 ~~a~~a~l~~P~giavd~~G~lyvaD~~n-Ir~i~~~G 366 (482)
.-..+..+++.+++ |+++.... |+..+...
T Consensus 149 ------~~~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~ 179 (342)
T 1yfq_A 149 ------VKNKIFTMDTNSSR-LIVGMNNSQVQWFRLPL 179 (342)
T ss_dssp ------SCCCEEEEEECSSE-EEEEESTTEEEEEESSC
T ss_pred ------eCCceEEEEecCCc-EEEEeCCCeEEEEECCc
Confidence 11346678888777 77766654 88877543
No 244
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=89.38 E-value=26 Score=37.68 Aligned_cols=112 Identities=10% Similarity=0.048 Sum_probs=57.2
Q ss_pred ceEEEecC--CCeEEEEcCCCeEEEEcCCCc-cccCCCcCCCCCCCceeecCCccEEEEcC-------------CCCEEE
Q psy8782 178 SGILQKGD--GSNIYLKNKPRIIKTTLGDGH-QRPLDCKDCNGEAGPKQRLLAPVALATAP-------------DGSLFV 241 (482)
Q Consensus 178 ~gi~~~~~--g~~lyi~d~~~~i~~~~g~G~-~~~~~~~~~~g~~~~~~~l~~P~giavd~-------------~G~lyv 241 (482)
..+.+.++ +..++....++.+..+.-... ..... .....-.....+++.| ++.+++
T Consensus 103 ~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~--------~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~ 174 (753)
T 3jro_A 103 NSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI--------IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFV 174 (753)
T ss_dssp EEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCE--------EEECCSSCEEEEEECCCC---------CGGGCCEE
T ss_pred EEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCccee--------EeecCCCceEEEEecCcccccccccccCCCCCEEE
Confidence 45555665 555666666666665532211 00000 0011112345666766 454444
Q ss_pred E-EC-CcEEEEcCC-C-eEEEEEeeccCCCCceeeEEEeCCC--CeEEEEeCCCCEEEEEec
Q psy8782 242 G-DF-NLIRRIMTD-G-TVRTVVRLNVTRVAYRYHIAYSPLD--GTLYISDPESHQILRVKN 297 (482)
Q Consensus 242 ~-D~-~~I~~i~~~-G-~v~~~~g~~~~~~~~p~giavd~~~--g~lyVaD~~n~~I~~~~~ 297 (482)
+ .. +.|+.++.. + ........-...-.....++++|.. +.+.++-...+.|+.++.
T Consensus 175 sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~ 236 (753)
T 3jro_A 175 TGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ 236 (753)
T ss_dssp EEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEE
T ss_pred EEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecC
Confidence 4 44 678877632 2 1111111112223456789999932 777777777788888874
No 245
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=89.35 E-value=26 Score=37.66 Aligned_cols=67 Identities=12% Similarity=0.144 Sum_probs=39.8
Q ss_pred cEEEEcCC--CCEEEEEC--CcEEEEcCC-CeEEEEEeeccCCCCceeeEEEeCCC--CeEEEEeCCCCEEEEEec
Q psy8782 229 VALATAPD--GSLFVGDF--NLIRRIMTD-GTVRTVVRLNVTRVAYRYHIAYSPLD--GTLYISDPESHQILRVKN 297 (482)
Q Consensus 229 ~giavd~~--G~lyv~D~--~~I~~i~~~-G~v~~~~g~~~~~~~~p~giavd~~~--g~lyVaD~~n~~I~~~~~ 297 (482)
..+++.++ ++++++-. +.|+.++.+ ++...+... .........++++| + +.++++-...+.|+.++.
T Consensus 57 ~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~-~~h~~~V~~v~~sp-~~~~~~l~sgs~dg~I~vwdl 130 (753)
T 3jro_A 57 WRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVH-AVHSASVNSVQWAP-HEYGPLLLVASSDGKVSVVEF 130 (753)
T ss_dssp EEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECC-GGGCSEEEEEETTSEEEEEEC
T ss_pred EEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccc-cCCCCCeEEEEECC-CCCCCEEEEEeCCCcEEEEEe
Confidence 45666555 65554444 667777643 332222211 22234567899998 5 767777677888988885
No 246
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=88.59 E-value=17 Score=34.45 Aligned_cols=66 Identities=6% Similarity=0.001 Sum_probs=42.7
Q ss_pred ccEEEEcCCCCEEEEEC--CcEEEEcC-CCeEE-EEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEec
Q psy8782 228 PVALATAPDGSLFVGDF--NLIRRIMT-DGTVR-TVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKN 297 (482)
Q Consensus 228 P~giavd~~G~lyv~D~--~~I~~i~~-~G~v~-~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~ 297 (482)
...+++.|+|.++++-. +.|+.++. +++.. ..+.. ..-.....|+++| ++.+.++-..+ .|+.++.
T Consensus 173 i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~--~h~~~v~~l~fs~-~g~~l~s~~~~-~v~iwd~ 242 (343)
T 3lrv_A 173 YSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPV--DEEAKIKEVKFAD-NGYWMVVECDQ-TVVCFDL 242 (343)
T ss_dssp CCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCC--CTTSCEEEEEECT-TSSEEEEEESS-BEEEEET
T ss_pred eEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEec--cCCCCEEEEEEeC-CCCEEEEEeCC-eEEEEEc
Confidence 56899999998888754 78998884 44432 22211 1224567899999 66544443333 8888885
No 247
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=88.50 E-value=17 Score=34.41 Aligned_cols=108 Identities=9% Similarity=-0.086 Sum_probs=67.8
Q ss_pred CccEEEEcC--CCCEEEEEC--CcEEEEcC-CCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCcc
Q psy8782 227 APVALATAP--DGSLFVGDF--NLIRRIMT-DGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDF 301 (482)
Q Consensus 227 ~P~giavd~--~G~lyv~D~--~~I~~i~~-~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~ 301 (482)
....+++.| ++.++++-. +.|+.++. .++....... ........++++| ++.++++-...+.|+.++..
T Consensus 127 ~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~--~~~~~i~~~~~~p-dg~~lasg~~dg~i~iwd~~--- 200 (343)
T 3lrv_A 127 EIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSA--KSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLS--- 200 (343)
T ss_dssp CEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECC--CSSCCCCEEEECT-TSCEEEEECTTSCEEEEESS---
T ss_pred CEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEec--CCCCceEEEEECC-CCCEEEEEcCCCEEEEEECC---
Confidence 356788899 888777554 78888884 4555443311 1122357899999 88888877778899999852
Q ss_pred CCCCCcE--EEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEECC-CEEEEcC
Q psy8782 302 SAPDYNV--EPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADGT-NIRMVDR 364 (482)
Q Consensus 302 ~~~~g~~--~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~~-nIr~i~~ 364 (482)
++.. ..+.+ ..-.....|++.++|...++-+. .|+..|.
T Consensus 201 ---~~~~~~~~~~~---------------------~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~ 242 (343)
T 3lrv_A 201 ---SPDQASSRFPV---------------------DEEAKIKEVKFADNGYWMVVECDQTVVCFDL 242 (343)
T ss_dssp ---CTTSCCEECCC---------------------CTTSCEEEEEECTTSSEEEEEESSBEEEEET
T ss_pred ---CCCCCccEEec---------------------cCCCCEEEEEEeCCCCEEEEEeCCeEEEEEc
Confidence 2221 11111 00124568999999986665444 4888874
No 248
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=88.43 E-value=17 Score=34.27 Aligned_cols=68 Identities=12% Similarity=0.180 Sum_probs=38.3
Q ss_pred cEEEEcCC--CCEEEEE-C-CcEEEEcC-CCeEEEEEeeccCCCCceeeEEEeCCC-CeEEEEeCCCCEEEEEec
Q psy8782 229 VALATAPD--GSLFVGD-F-NLIRRIMT-DGTVRTVVRLNVTRVAYRYHIAYSPLD-GTLYISDPESHQILRVKN 297 (482)
Q Consensus 229 ~giavd~~--G~lyv~D-~-~~I~~i~~-~G~v~~~~g~~~~~~~~p~giavd~~~-g~lyVaD~~n~~I~~~~~ 297 (482)
..|++.++ +.++++- . +.|+.++. +++...+... .........++++|.+ +.++++-...+.|+.++.
T Consensus 59 ~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~ 132 (379)
T 3jrp_A 59 WRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEF 132 (379)
T ss_dssp EEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEC
T ss_pred EEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeee-cCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEec
Confidence 35555544 5444443 3 56777764 3432222211 1223456789999831 666666667788888885
No 249
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=86.80 E-value=21 Score=33.64 Aligned_cols=149 Identities=11% Similarity=0.079 Sum_probs=77.9
Q ss_pred ceEEEEcCCCcEEEEeC--CcEEEEcCCC--------eEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEE
Q psy8782 122 PVALATAPDGSLFVGDF--NLIRRIMTDG--------TVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYL 191 (482)
Q Consensus 122 P~glavd~~G~lyvaD~--~~Irki~~~G--------~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi 191 (482)
...|++.|+|.++++-. +.|+..+.+. ........- ...-..+.+.+++..|..
T Consensus 61 v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h----------------~~~V~~v~~sp~g~~las 124 (330)
T 2hes_X 61 IRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGH----------------ENEVKGVAWSNDGYYLAT 124 (330)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC--------------------CEEEEEECTTSCEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCC----------------CCcEEEEEECCCCCEEEE
Confidence 46788999998766554 6777766531 111111000 011245666666666666
Q ss_pred EcCCCeEEEEcCC--Ccc-ccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC--CcEEEEcC-CC--eEEEEEeec
Q psy8782 192 KNKPRIIKTTLGD--GHQ-RPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF--NLIRRIMT-DG--TVRTVVRLN 263 (482)
Q Consensus 192 ~d~~~~i~~~~g~--G~~-~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~--~~I~~i~~-~G--~v~~~~g~~ 263 (482)
+..++.+....-. +.. .... .....-.....+++.|++.++++-. +.|+.++. .+ +....+
T Consensus 125 ~s~D~~v~iwd~~~~~~~~~~~~--------~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~--- 193 (330)
T 2hes_X 125 CSRDKSVWIWETDESGEEYECIS--------VLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVL--- 193 (330)
T ss_dssp EETTSCEEEEECCTTCCCCEEEE--------EECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEE---
T ss_pred EeCCCEEEEEeccCCCCCeEEEE--------EeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEc---
Confidence 6666666655321 110 0000 0001112356889999998777665 67888764 33 222222
Q ss_pred cCCCCceeeEEEeCCC-CeEEEEeCCCCEEEEEec
Q psy8782 264 VTRVAYRYHIAYSPLD-GTLYISDPESHQILRVKN 297 (482)
Q Consensus 264 ~~~~~~p~giavd~~~-g~lyVaD~~n~~I~~~~~ 297 (482)
...-.....++++|.. +.+.++-...+.|+.++.
T Consensus 194 ~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~ 228 (330)
T 2hes_X 194 NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKY 228 (330)
T ss_dssp CCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEE
T ss_pred cCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEe
Confidence 1222345778998832 455555555667766663
No 250
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=86.77 E-value=32 Score=36.11 Aligned_cols=112 Identities=9% Similarity=0.007 Sum_probs=67.6
Q ss_pred CccEEEEcCCCC-EEEEEC-CcEEEEcCCCeEEEEEeeccCC--CCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccC
Q psy8782 227 APVALATAPDGS-LFVGDF-NLIRRIMTDGTVRTVVRLNVTR--VAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFS 302 (482)
Q Consensus 227 ~P~giavd~~G~-lyv~D~-~~I~~i~~~G~v~~~~g~~~~~--~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~ 302 (482)
....++..|+|. |-++.. +.|+.++.++.+.+ +. .... -..-..++++| +|.+..+-...+.|+.++..
T Consensus 87 ~V~~vawSPdG~~LAs~s~dg~V~iwd~~~~l~~-l~-~~~~~~~~sv~svafSP-DG~~LAsgs~DGtVkIWd~~---- 159 (588)
T 2j04_A 87 YPRVCKPSPIDDWMAVLSNNGNVSVFKDNKMLTN-LD-SKGNLSSRTYHCFEWNP-IESSIVVGNEDGELQFFSIR---- 159 (588)
T ss_dssp CEEEEEECSSSSCEEEEETTSCEEEEETTEEEEE-CC-CSSCSTTTCEEEEEECS-SSSCEEEEETTSEEEEEECC----
T ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEeCCceeee-cc-CCCccccccEEEEEEcC-CCCEEEEEcCCCEEEEEECC----
Confidence 467899999997 444555 67888886663322 22 1110 11356899999 66555555557889888852
Q ss_pred CCCCc--------EEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEECCC-EEEEcCCC
Q psy8782 303 APDYN--------VEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADGTN-IRMVDRDG 366 (482)
Q Consensus 303 ~~~g~--------~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~~n-Ir~i~~~G 366 (482)
++. +.++-+.. . .....-..+++.|+| |..+..++ ||..+.++
T Consensus 160 --~~~l~~~~~i~l~ti~~~~----------~--------gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~ 211 (588)
T 2j04_A 160 --KNSENTPEFYFESSIRLSD----------A--------GSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSA 211 (588)
T ss_dssp --CCTTTCCCCEEEEEEECSC----------T--------TCCCCEEEEEEETTE-EEEEETTCCEEEECCCS
T ss_pred --CCccccccceeeeeeeccc----------c--------cccccEEEEEEcCCc-EEEEeCCCeEEEEECCC
Confidence 232 23332110 0 012456789999999 66666666 88888654
No 251
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=86.66 E-value=22 Score=37.61 Aligned_cols=138 Identities=17% Similarity=0.054 Sum_probs=71.6
Q ss_pred eEEEEcCCCcEEEEeC-CcEEEEcCC-CeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcC------
Q psy8782 123 VALATAPDGSLFVGDF-NLIRRIMTD-GTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNK------ 194 (482)
Q Consensus 123 ~glavd~~G~lyvaD~-~~Irki~~~-G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~------ 194 (482)
..+++.|+|.++.+.. +.|+.++.+ |+...+....... ......+.+++||..|.++..
T Consensus 19 ~~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~-------------~~~~~~~~~SpDg~~la~~~~~~~~~~ 85 (719)
T 1z68_A 19 FFPNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMK-------------SVNASNYGLSPDRQFVYLESDYSKLWR 85 (719)
T ss_dssp CCCEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHH-------------TTTCSEEEECTTSSEEEEEEEEEECSS
T ss_pred CccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEcccccc-------------ccceeeEEECCCCCeEEEEecCceeEE
Confidence 3667778887655555 678888764 5555444221000 012345667777776655432
Q ss_pred ---CCeEEEEc-CCCccccCCCcCCCCCCCceeec-CCccEEEEcCCCC-EEEEECCcEEEEcCC-CeEEEEEeeccCC-
Q psy8782 195 ---PRIIKTTL-GDGHQRPLDCKDCNGEAGPKQRL-LAPVALATAPDGS-LFVGDFNLIRRIMTD-GTVRTVVRLNVTR- 266 (482)
Q Consensus 195 ---~~~i~~~~-g~G~~~~~~~~~~~g~~~~~~~l-~~P~giavd~~G~-lyv~D~~~I~~i~~~-G~v~~~~g~~~~~- 266 (482)
.+.+.++. .+|+.... ..+ .....+++.|||. |.++..+.|+.++.+ |+...+...+...
T Consensus 86 ~s~~~~i~~~d~~~g~~~~~------------~~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~ 153 (719)
T 1z68_A 86 YSYTATYYIYDLSNGEFVRG------------NELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENK 153 (719)
T ss_dssp SCEEEEEEEEETTTTEECCS------------SCCCSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTT
T ss_pred eecceEEEEEECCCCccccc------------eecCcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCC
Confidence 23444442 33333100 111 2356688899984 555555788888754 4443322111110
Q ss_pred --------------CCceeeEEEeCCCCeEEEE
Q psy8782 267 --------------VAYRYHIAYSPLDGTLYIS 285 (482)
Q Consensus 267 --------------~~~p~giavd~~~g~lyVa 285 (482)
+.....++++|++..|+++
T Consensus 154 v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~ 186 (719)
T 1z68_A 154 IFNGIPDWVYEEEMLATKYALWWSPNGKFLAYA 186 (719)
T ss_dssp EEESSCCHHHHHHTTCSSCCEEECTTSSEEEEE
T ss_pred eEcccccceeeeecccCcccEEECCCCCEEEEE
Confidence 1223579999944456654
No 252
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=86.45 E-value=25 Score=34.22 Aligned_cols=63 Identities=11% Similarity=-0.056 Sum_probs=40.5
Q ss_pred EcCCCCEEEEEC--CcEEEEcC-CCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEec
Q psy8782 233 TAPDGSLFVGDF--NLIRRIMT-DGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKN 297 (482)
Q Consensus 233 vd~~G~lyv~D~--~~I~~i~~-~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~ 297 (482)
..+++.++++-. +.|+.++. +++....+.. ...-.....++++| ++.+.++-...+.|+.++.
T Consensus 178 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~ 243 (437)
T 3gre_A 178 VNEEKSLLVALTNLSRVIIFDIRTLERLQIIEN-SPRHGAVSSICIDE-ECCVLILGTTRGIIDIWDI 243 (437)
T ss_dssp ECSSCEEEEEEETTSEEEEEETTTCCEEEEEEC-CGGGCCEEEEEECT-TSCEEEEEETTSCEEEEET
T ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEcc-CCCCCceEEEEECC-CCCEEEEEcCCCeEEEEEc
Confidence 446675555544 78888884 4555444432 11223578899999 6776666666788988885
No 253
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=84.76 E-value=26 Score=32.81 Aligned_cols=61 Identities=13% Similarity=0.012 Sum_probs=34.7
Q ss_pred CccEEEEcCCCCEEEEE-C----------CcEEEEcCCCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeC-C------
Q psy8782 227 APVALATAPDGSLFVGD-F----------NLIRRIMTDGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDP-E------ 288 (482)
Q Consensus 227 ~P~giavd~~G~lyv~D-~----------~~I~~i~~~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~-~------ 288 (482)
....+++.|+| |+++. . ..|+.++ .|++..+... .. .. .++|++..|+++.. .
T Consensus 172 ~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~~--~~---~~--~~spdg~~l~~~~~~~~~~~~~ 242 (347)
T 2gop_A 172 RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE-DGKEEKMFEK--VS---FY--AVDSDGERILLYGKPEKKYMSE 242 (347)
T ss_dssp TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE-TTEEEEEEEE--ES---EE--EEEECSSCEEEEECCSSSCCCS
T ss_pred CcccccCCCCe-EEEEEecccccccccccccEEEeC-CCceEEeccC--cc---ee--eECCCCCEEEEEEccccCCccc
Confidence 45677888999 66544 2 2578888 7777665432 11 11 22773445655432 2
Q ss_pred CCEEEEEe
Q psy8782 289 SHQILRVK 296 (482)
Q Consensus 289 n~~I~~~~ 296 (482)
..+|+.++
T Consensus 243 ~~~l~~~d 250 (347)
T 2gop_A 243 HNKLYIYD 250 (347)
T ss_dssp SCEEEEEC
T ss_pred cceEEEEC
Confidence 35677765
No 254
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=84.33 E-value=31 Score=33.36 Aligned_cols=153 Identities=12% Similarity=0.004 Sum_probs=79.1
Q ss_pred ceEEEecCCCeEEEEcCCCeEEEEcC-CCccccCCCcCCCCCCCceeecCCccEEEEcCCCCEEEEEC-CcEEEEcCC--
Q psy8782 178 SGILQKGDGSNIYLKNKPRIIKTTLG-DGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF-NLIRRIMTD-- 253 (482)
Q Consensus 178 ~gi~~~~~g~~lyi~d~~~~i~~~~g-~G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~lyv~D~-~~I~~i~~~-- 253 (482)
..+.+.+++..+++...++.+..+.- +++.... ....-.....++.++ ..|+.+.. +.|+.++..
T Consensus 138 ~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~----------~~~~~~~v~~~~~~~-~~l~~~~~dg~i~i~d~~~~ 206 (401)
T 4aez_A 138 ASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRT----------MAGHQARVGCLSWNR-HVLSSGSRSGAIHHHDVRIA 206 (401)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE----------ECCCSSCEEEEEEET-TEEEEEETTSEEEEEETTSS
T ss_pred EEEEECCCCCEEEEECCCCeEEEEECcCCeEEEE----------ecCCCCceEEEEECC-CEEEEEcCCCCEEEEecccC
Confidence 45566666666666665555555532 2221100 000111234566643 23444444 677777754
Q ss_pred CeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCcccc
Q psy8782 254 GTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPAR 333 (482)
Q Consensus 254 G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~ 333 (482)
+.....+. ..-.....++++| ++.++++-...+.|+.++. .++......-
T Consensus 207 ~~~~~~~~---~~~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~------~~~~~~~~~~-------------------- 256 (401)
T 4aez_A 207 NHQIGTLQ---GHSSEVCGLAWRS-DGLQLASGGNDNVVQIWDA------RSSIPKFTKT-------------------- 256 (401)
T ss_dssp SCEEEEEE---CCSSCEEEEEECT-TSSEEEEEETTSCEEEEET------TCSSEEEEEC--------------------
T ss_pred cceeeEEc---CCCCCeeEEEEcC-CCCEEEEEeCCCeEEEccC------CCCCccEEec--------------------
Confidence 33333322 1223567899999 7776666666788998885 2333222110
Q ss_pred ccccCCcceEEEeCCC-cEEEEEC---CC-EEEEcC-CCcEEEEE
Q psy8782 334 DAKLAYPKGVAVSADN-ILYFADG---TN-IRMVDR-DGIVTTVI 372 (482)
Q Consensus 334 ~a~l~~P~giavd~~G-~lyvaD~---~n-Ir~i~~-~G~i~ti~ 372 (482)
..-.....+++.+++ .++++-. .. |+..+. ++.....+
T Consensus 257 -~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~ 300 (401)
T 4aez_A 257 -NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTV 300 (401)
T ss_dssp -CCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEE
T ss_pred -CCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEE
Confidence 001235678888865 5666543 22 888874 45543333
No 255
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=84.28 E-value=27 Score=32.54 Aligned_cols=148 Identities=9% Similarity=0.005 Sum_probs=74.6
Q ss_pred EcCCCcEEEEeC--CcEEEEcCC-CeEEEEEeeCCCcccCCCccccccccccCCceEEEec---CCCeEEEEcCCCeEEE
Q psy8782 127 TAPDGSLFVGDF--NLIRRIMTD-GTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKG---DGSNIYLKNKPRIIKT 200 (482)
Q Consensus 127 vd~~G~lyvaD~--~~Irki~~~-G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~---~g~~lyi~d~~~~i~~ 200 (482)
+.+++.++++-. +.|+.++.. +......... .....+.+.+ +++.+++...++.+..
T Consensus 176 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-----------------~~v~~~~~~~~~~~~~~l~~~~~dg~i~i 238 (357)
T 3i2n_A 176 YNQEERVVCAGYDNGDIKLFDLRNMALRWETNIK-----------------NGVCSLEFDRKDISMNKLVATSLEGKFHV 238 (357)
T ss_dssp CC-CCCEEEEEETTSEEEEEETTTTEEEEEEECS-----------------SCEEEEEESCSSSSCCEEEEEESTTEEEE
T ss_pred cCCCCCEEEEEccCCeEEEEECccCceeeecCCC-----------------CceEEEEcCCCCCCCCEEEEECCCCeEEE
Confidence 557787665544 678888764 4443332211 1234556666 6666666666666655
Q ss_pred EcCC-CccccCCCcCCCCCCCceeecCCccEEEEcCCCC-EEEEEC--CcEEEEcCC-----------C-------eEEE
Q psy8782 201 TLGD-GHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGS-LFVGDF--NLIRRIMTD-----------G-------TVRT 258 (482)
Q Consensus 201 ~~g~-G~~~~~~~~~~~g~~~~~~~l~~P~giavd~~G~-lyv~D~--~~I~~i~~~-----------G-------~v~~ 258 (482)
+.-. +.....- ... .....-.....+++.|+|. ++++-. +.|+.++.. | +...
T Consensus 239 ~d~~~~~~~~~~--~~~---~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~ 313 (357)
T 3i2n_A 239 FDMRTQHPTKGF--ASV---SEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSL 313 (357)
T ss_dssp EEEEEEETTTEE--EEE---EEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEE
T ss_pred EeCcCCCcccce--eee---ccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccce
Confidence 4321 1110000 000 0001223456788888886 444433 567766632 1 1111
Q ss_pred EEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEec
Q psy8782 259 VVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKN 297 (482)
Q Consensus 259 ~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~ 297 (482)
+... ...-.....++++|.+..|.++-...+.|+.++.
T Consensus 314 ~~~~-~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~ 351 (357)
T 3i2n_A 314 LQNV-TLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIV 351 (357)
T ss_dssp EEEE-ECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEE
T ss_pred eecc-ccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEEC
Confidence 1111 1122346789999933455556667788888874
No 256
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=83.10 E-value=47 Score=34.52 Aligned_cols=47 Identities=15% Similarity=0.213 Sum_probs=26.8
Q ss_pred eCCCcEEEEECCC-EEEEcC-CCcEEEEEcCCCCCCCCCcCC--CCceEEec
Q psy8782 346 SADNILYFADGTN-IRMVDR-DGIVTTVIGNHMHKSHWKPIP--CEGTLNIE 393 (482)
Q Consensus 346 d~~G~lyvaD~~n-Ir~i~~-~G~i~ti~G~~~~~~~~~~~~--~dg~l~v~ 393 (482)
..++.||+..... ++.+|. +|++.--.-.+... ...|+. .+|.+|+.
T Consensus 473 t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~-~~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 473 TKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGG-IGSPMTYSFKGKQYIG 523 (571)
T ss_dssp ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC-CSCCEEEEETTEEEEE
T ss_pred ECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCc-EeeeEEEEECCEEEEE
Confidence 3467788876544 888884 78865444333211 123333 56766663
No 257
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=81.61 E-value=34 Score=31.82 Aligned_cols=65 Identities=9% Similarity=0.031 Sum_probs=42.4
Q ss_pred ccEEEEcCCCCEEEEE-C-CcEEEEcC-CCeEEEEEeeccCCCCceeeEEE--eCCCCeEEEEeCCCCEEEEEec
Q psy8782 228 PVALATAPDGSLFVGD-F-NLIRRIMT-DGTVRTVVRLNVTRVAYRYHIAY--SPLDGTLYISDPESHQILRVKN 297 (482)
Q Consensus 228 P~giavd~~G~lyv~D-~-~~I~~i~~-~G~v~~~~g~~~~~~~~p~giav--d~~~g~lyVaD~~n~~I~~~~~ 297 (482)
...+++.+++.++++- . +.|+.++. +++.....+. -.....+++ ++ ++.++++-...+.|+.++.
T Consensus 89 v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~----~~~v~~~~~~~~~-~~~~l~~~~~dg~i~vwd~ 158 (368)
T 3mmy_A 89 VLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQH----DAPVKTIHWIKAP-NYSCVMTGSWDKTLKFWDT 158 (368)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC----SSCEEEEEEEECS-SCEEEEEEETTSEEEEECS
T ss_pred EEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccc----cCceEEEEEEeCC-CCCEEEEccCCCcEEEEEC
Confidence 4567788887655444 3 67888874 4555554331 234577888 77 7776666666788888885
No 258
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=81.20 E-value=35 Score=31.72 Aligned_cols=34 Identities=9% Similarity=0.050 Sum_probs=22.6
Q ss_pred CceEEEEcCCCcEEEE-eC-CcEEEEcCC-CeEEEEE
Q psy8782 121 APVALATAPDGSLFVG-DF-NLIRRIMTD-GTVRTVV 154 (482)
Q Consensus 121 ~P~glavd~~G~lyva-D~-~~Irki~~~-G~v~ti~ 154 (482)
....+++.++|.++++ .. +.|+.++.+ +....+.
T Consensus 88 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 124 (368)
T 3mmy_A 88 PVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIA 124 (368)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred CEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeec
Confidence 4678899999875554 44 678888764 5554443
No 259
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=80.82 E-value=36 Score=31.60 Aligned_cols=65 Identities=6% Similarity=-0.020 Sum_probs=34.8
Q ss_pred EEcCCCCEEEEEC--CcEEEEcCC-Ce-EEEEEeeccC-CCCceeeEE----EeCCCCeEEEEeCCCCEEEEEec
Q psy8782 232 ATAPDGSLFVGDF--NLIRRIMTD-GT-VRTVVRLNVT-RVAYRYHIA----YSPLDGTLYISDPESHQILRVKN 297 (482)
Q Consensus 232 avd~~G~lyv~D~--~~I~~i~~~-G~-v~~~~g~~~~-~~~~p~gia----vd~~~g~lyVaD~~n~~I~~~~~ 297 (482)
++.+++.++++-. +.|+.++.. +. ....+..... .-.....++ +++ ++.++++-...+.|+.++.
T Consensus 124 ~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~ 197 (357)
T 3i2n_A 124 GIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQ-EERVVCAGYDNGDIKLFDL 197 (357)
T ss_dssp GCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC--CCCEEEEEETTSEEEEEET
T ss_pred ccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCC-CCCEEEEEccCCeEEEEEC
Confidence 4467776555544 678888744 22 2222221111 111334555 566 6766666667789999985
No 260
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=80.54 E-value=40 Score=31.94 Aligned_cols=70 Identities=6% Similarity=0.081 Sum_probs=41.6
Q ss_pred CccEEEEcCCCC-EE-EEEC-CcEEEEcCCC-e-EEEEEeec------------cCCCCceeeEEEeCCCCeEEEEeCCC
Q psy8782 227 APVALATAPDGS-LF-VGDF-NLIRRIMTDG-T-VRTVVRLN------------VTRVAYRYHIAYSPLDGTLYISDPES 289 (482)
Q Consensus 227 ~P~giavd~~G~-ly-v~D~-~~I~~i~~~G-~-v~~~~g~~------------~~~~~~p~giavd~~~g~lyVaD~~n 289 (482)
....+++.|++. ++ .+.. +.|+.++... . ....+... ...-.....++++| ++.+.++-...
T Consensus 188 ~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d 266 (408)
T 4a11_B 188 EILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS-DGLHLLTVGTD 266 (408)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT-TSSEEEEEETT
T ss_pred cEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC-CCCEEEEecCC
Confidence 356788999886 44 4444 6788887432 1 11111000 11123467899999 67655655567
Q ss_pred CEEEEEec
Q psy8782 290 HQILRVKN 297 (482)
Q Consensus 290 ~~I~~~~~ 297 (482)
+.|+.++.
T Consensus 267 g~i~vwd~ 274 (408)
T 4a11_B 267 NRMRLWNS 274 (408)
T ss_dssp SCEEEEET
T ss_pred CeEEEEEC
Confidence 78888885
No 261
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=80.47 E-value=35 Score=31.22 Aligned_cols=118 Identities=13% Similarity=0.057 Sum_probs=58.2
Q ss_pred ceEEEecC--CCeEEEEcCCCeEEEEc-CCCcccc-CCCcC--CCCCCCceeecCCccEEEEcCC---CCEEEEEC--Cc
Q psy8782 178 SGILQKGD--GSNIYLKNKPRIIKTTL-GDGHQRP-LDCKD--CNGEAGPKQRLLAPVALATAPD---GSLFVGDF--NL 246 (482)
Q Consensus 178 ~gi~~~~~--g~~lyi~d~~~~i~~~~-g~G~~~~-~~~~~--~~g~~~~~~~l~~P~giavd~~---G~lyv~D~--~~ 246 (482)
..+.+.++ +..+..+..++.+..+. .++.... ..... ..-.............+++.|+ +.++++-. +.
T Consensus 114 ~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 193 (351)
T 3f3f_A 114 YSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQA 193 (351)
T ss_dssp EEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEE
T ss_pred eEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCc
Confidence 45666666 55566666666666554 2222110 00000 0000001122334567888875 65554444 33
Q ss_pred EEEE-cCCCeEEEEEeeccCCCCceeeEEEeCCCC----eEEEEeCCCCEEEEEec
Q psy8782 247 IRRI-MTDGTVRTVVRLNVTRVAYRYHIAYSPLDG----TLYISDPESHQILRVKN 297 (482)
Q Consensus 247 I~~i-~~~G~v~~~~g~~~~~~~~p~giavd~~~g----~lyVaD~~n~~I~~~~~ 297 (482)
+... ..+++...+... ...-.....++++| ++ .++++-...+.|+.++.
T Consensus 194 ~~~~~~~~~~~~~~~~~-~~h~~~i~~~~~~p-~~~~~~~~l~s~~~dg~i~iwd~ 247 (351)
T 3f3f_A 194 IIYQRGKDGKLHVAAKL-PGHKSLIRSISWAP-SIGRWYQLIATGCKDGRIRIFKI 247 (351)
T ss_dssp EEEEECTTSCEEEEEEC-CCCCSCEEEEEECC-CSSCSSEEEEEEETTSCEEEEEE
T ss_pred EEEEccCCCceeeeeec-CCCCcceeEEEECC-CCCCcceEEEEEcCCCeEEEEeC
Confidence 3333 345554333221 12233467899999 65 67777666777887775
No 262
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=80.37 E-value=46 Score=32.60 Aligned_cols=61 Identities=13% Similarity=0.113 Sum_probs=38.8
Q ss_pred EcCCCCEEEE-EC-CcEEEEcC-CCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEec
Q psy8782 233 TAPDGSLFVG-DF-NLIRRIMT-DGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKN 297 (482)
Q Consensus 233 vd~~G~lyv~-D~-~~I~~i~~-~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~ 297 (482)
+.+++.++++ .. +.|+.++. +++....+. ........++++| ++...++-...+.|+.++.
T Consensus 276 ~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~---~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~ 339 (464)
T 3v7d_B 276 VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILS---GHTDRIYSTIYDH-ERKRCISASMDTTIRIWDL 339 (464)
T ss_dssp EEEETTEEEEEETTSCEEEEETTTTEEEEEEC---CCSSCEEEEEEET-TTTEEEEEETTSCEEEEET
T ss_pred EcCCCCEEEEEeCCCeEEEEECCCCcEEEEec---CCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEEC
Confidence 3455554444 44 78888884 455544432 2234567899999 6666666666788999985
No 263
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=80.36 E-value=41 Score=31.95 Aligned_cols=31 Identities=19% Similarity=0.083 Sum_probs=20.7
Q ss_pred EEEEcCCC-CEEEEEC-CcEEEEcCC-CeEEEEE
Q psy8782 230 ALATAPDG-SLFVGDF-NLIRRIMTD-GTVRTVV 260 (482)
Q Consensus 230 giavd~~G-~lyv~D~-~~I~~i~~~-G~v~~~~ 260 (482)
++++.||| .|+++.. ..|++++.+ |+...+.
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~ 118 (388)
T 3pe7_A 85 GGFLSPDDDALFYVKDGRNLMRVDLATLEENVVY 118 (388)
T ss_dssp SCEECTTSSEEEEEETTTEEEEEETTTCCEEEEE
T ss_pred ceEEcCCCCEEEEEeCCCeEEEEECCCCcceeee
Confidence 45788888 4777766 578888865 4444443
No 264
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=78.97 E-value=69 Score=33.95 Aligned_cols=49 Identities=10% Similarity=0.123 Sum_probs=27.4
Q ss_pred EeCCCcEEEEECCC-EEEEcC-CCcEEEEEcCCCCCCCCCcC--CCCceEEecc
Q psy8782 345 VSADNILYFADGTN-IRMVDR-DGIVTTVIGNHMHKSHWKPI--PCEGTLNIEE 394 (482)
Q Consensus 345 vd~~G~lyvaD~~n-Ir~i~~-~G~i~ti~G~~~~~~~~~~~--~~dg~l~v~~ 394 (482)
....|.||+.+... ++.+|. +|++.--.-.+.. ....|+ ..+|.+|+..
T Consensus 466 ~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~-~~~~p~~~~~~G~~yva~ 518 (668)
T 1kv9_A 466 STAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSG-IVAAPMTFELAGRQYVAI 518 (668)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC-CCSCCEEEEETTEEEEEE
T ss_pred EeCCCEEEEECCcccchhhhhhcChhheEecCCCC-cccCceEEEECCEEEEEE
Confidence 33567788886655 888885 6876543333211 111233 3567777654
No 265
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=78.07 E-value=42 Score=30.84 Aligned_cols=67 Identities=10% Similarity=0.136 Sum_probs=36.2
Q ss_pred EEEEcC--CCCEEEEEC--CcEEEEcCC-CeEEEEEeeccCCCCceeeEEEeCCC-CeEEEEeCCCCEEEEEec
Q psy8782 230 ALATAP--DGSLFVGDF--NLIRRIMTD-GTVRTVVRLNVTRVAYRYHIAYSPLD-GTLYISDPESHQILRVKN 297 (482)
Q Consensus 230 giavd~--~G~lyv~D~--~~I~~i~~~-G~v~~~~g~~~~~~~~p~giavd~~~-g~lyVaD~~n~~I~~~~~ 297 (482)
.+++.+ +|.++++-. +.|+.++.. ++...+... ...-.....++++|.. +.+.++-...+.|+.++.
T Consensus 58 ~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~-~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~ 130 (297)
T 2pm7_B 58 RVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVH-AVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEF 130 (297)
T ss_dssp EEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEB
T ss_pred EEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEe-ecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEe
Confidence 455543 365555444 567777643 321111100 1112235678898832 666666666788888875
No 266
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=77.51 E-value=54 Score=31.77 Aligned_cols=136 Identities=11% Similarity=0.038 Sum_probs=71.6
Q ss_pred CccEEEEcCCCCEEEEEC--CcEEEEcC-CCeEEEEEeeccCCCCceeeEEEeCC---CCeEEEEeCCCCEEEEEecCCc
Q psy8782 227 APVALATAPDGSLFVGDF--NLIRRIMT-DGTVRTVVRLNVTRVAYRYHIAYSPL---DGTLYISDPESHQILRVKNAMD 300 (482)
Q Consensus 227 ~P~giavd~~G~lyv~D~--~~I~~i~~-~G~v~~~~g~~~~~~~~p~giavd~~---~g~lyVaD~~n~~I~~~~~~~~ 300 (482)
....++++|++.++++-. +.|+.++. .++....+... .-.....+++.|. ++.+.++-...+.|+.++.
T Consensus 216 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~--- 290 (437)
T 3gre_A 216 AVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFG--DHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNF--- 290 (437)
T ss_dssp CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCT--TCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEET---
T ss_pred ceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecC--CCCceEEEEeccccCCCccEEEEEcCCCcEEEEEc---
Confidence 567899999987666544 67888884 46555443211 1112456655441 5667777777888988885
Q ss_pred cCCCCCc-EEEEecCCcccCCCCCCccCCCcccccc------ccCCcceEEEeCCCcEEEEECCC--EEEEcC-CCc-EE
Q psy8782 301 FSAPDYN-VEPAVGSGERCLPGDEAHCGDGAPARDA------KLAYPKGVAVSADNILYFADGTN--IRMVDR-DGI-VT 369 (482)
Q Consensus 301 ~~~~~g~-~~~vaG~g~~~~~g~~~~~gdg~~a~~a------~l~~P~giavd~~G~lyvaD~~n--Ir~i~~-~G~-i~ 369 (482)
.++. +..+.+...... ...+..++...... .-.....++++ ++.++++-+.. |++.+. ++. +.
T Consensus 291 ---~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~ 364 (437)
T 3gre_A 291 ---VKGHCQYAFINSDEQPS--MEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSK 364 (437)
T ss_dssp ---TTTEEEEEEESSSSCCC--GGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCE
T ss_pred ---CCCcEEEEEEcCCCCCc--cceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccce
Confidence 3344 333433211100 00011111000111 11225668998 66666665533 888874 444 44
Q ss_pred EEEc
Q psy8782 370 TVIG 373 (482)
Q Consensus 370 ti~G 373 (482)
++.+
T Consensus 365 ~~~~ 368 (437)
T 3gre_A 365 AVIS 368 (437)
T ss_dssp EEEC
T ss_pred EEec
Confidence 5544
No 267
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=77.38 E-value=15 Score=36.66 Aligned_cols=117 Identities=8% Similarity=-0.091 Sum_probs=68.3
Q ss_pred CccEEEEcCCCCEEE----EEC--CcEEEEcCCC---------eEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCE
Q psy8782 227 APVALATAPDGSLFV----GDF--NLIRRIMTDG---------TVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQ 291 (482)
Q Consensus 227 ~P~giavd~~G~lyv----~D~--~~I~~i~~~G---------~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~ 291 (482)
.+..+++.++|.+.+ +-. +.|+.++... +...........-.....|+++|.++.++++-...+.
T Consensus 94 ~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~ 173 (434)
T 2oit_A 94 PIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGS 173 (434)
T ss_dssp CEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSC
T ss_pred cccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCe
Confidence 367899999997665 333 5777776321 1101111101112346789999955788887777888
Q ss_pred EEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEE-EEECCC-EEEEcCCCcEE
Q psy8782 292 ILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILY-FADGTN-IRMVDRDGIVT 369 (482)
Q Consensus 292 I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~ly-vaD~~n-Ir~i~~~G~i~ 369 (482)
|+.++. .++.. ...-. + .-..+..++++++|..+ ++...+ |+.++..+...
T Consensus 174 v~iwD~------~~~~~-~~~~~------------~--------~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~ 226 (434)
T 2oit_A 174 IAVLQV------TETVK-VCATL------------P--------STVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEK 226 (434)
T ss_dssp EEEEEE------SSSEE-EEEEE------------C--------GGGCEEEEEECTTSSCEEEEETTSCEEEECTTCCEE
T ss_pred EEEEEc------CCCcc-eeecc------------C--------CCCceeEEEEcCCCCEEEEEcCCCcEEEEccCCccc
Confidence 888885 23321 11100 0 01246789999988644 444444 99998876544
Q ss_pred E
Q psy8782 370 T 370 (482)
Q Consensus 370 t 370 (482)
.
T Consensus 227 ~ 227 (434)
T 2oit_A 227 K 227 (434)
T ss_dssp E
T ss_pred c
Confidence 3
No 268
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=76.34 E-value=84 Score=33.36 Aligned_cols=45 Identities=11% Similarity=0.093 Sum_probs=24.9
Q ss_pred CCCcEEEEECCC-EEEEcC-CCcEEEEEcCCCCCCCCCcCC--CCceEEe
Q psy8782 347 ADNILYFADGTN-IRMVDR-DGIVTTVIGNHMHKSHWKPIP--CEGTLNI 392 (482)
Q Consensus 347 ~~G~lyvaD~~n-Ir~i~~-~G~i~ti~G~~~~~~~~~~~~--~dg~l~v 392 (482)
.++.+|+....+ ++.+|. +|++.--+-.+.. ....|+. .+|..|+
T Consensus 487 ~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~-~~~~p~~y~~~G~~~v 535 (677)
T 1kb0_A 487 AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTG-VVAAPSTYMVDGRQYV 535 (677)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSC-CCSCCEEEEETTEEEE
T ss_pred CCCEEEEECCCCcEEEEECCCCceeeeeeCCCC-cccCCEEEEeCCEEEE
Confidence 456677775544 888885 6876544332221 1123443 5676665
No 269
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=75.99 E-value=47 Score=30.95 Aligned_cols=56 Identities=11% Similarity=0.078 Sum_probs=34.5
Q ss_pred CCccEEEEcCCCC-EEEEEC------CcEEEEcCC-CeEEEEEeeccCCCCceeeEEEeCCCCeEEEEe
Q psy8782 226 LAPVALATAPDGS-LFVGDF------NLIRRIMTD-GTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISD 286 (482)
Q Consensus 226 ~~P~giavd~~G~-lyv~D~------~~I~~i~~~-G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD 286 (482)
.....+++.|||. |+++.. ..|+.++.+ |+...+.... . ...++++|++..|+++.
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~----~-~~~~~wspdg~~l~~~~ 122 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK----N-IRSLEWNEDSRKLLIVG 122 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES----E-EEEEEECTTSSEEEEEE
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC----C-ccceeECCCCCEEEEEE
Confidence 3456788899984 554432 248888755 4555544321 1 67789999445677764
No 270
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=75.58 E-value=61 Score=31.41 Aligned_cols=123 Identities=18% Similarity=0.152 Sum_probs=66.2
Q ss_pred ccEEEEcC---CCCEEEEEC-CcEEEEcCCCeEEEEEeec---c-------------CCCCceeeEEEeCC-CCeEEEEe
Q psy8782 228 PVALATAP---DGSLFVGDF-NLIRRIMTDGTVRTVVRLN---V-------------TRVAYRYHIAYSPL-DGTLYISD 286 (482)
Q Consensus 228 P~giavd~---~G~lyv~D~-~~I~~i~~~G~v~~~~g~~---~-------------~~~~~p~giavd~~-~g~lyVaD 286 (482)
-..|++++ .+.||+... ..|+|.+..|+--+.+... . .....-..|+++|. .+.||++.
T Consensus 117 i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~ 196 (394)
T 3b7f_A 117 VFWLTPGHASEPGTWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGM 196 (394)
T ss_dssp EEEEEECCTTSTTCEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEE
T ss_pred eeEEEeCCCCCCCEEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEE
Confidence 44688886 589999754 7888887766543322110 0 00112347888873 46899986
Q ss_pred CCCCEEEEEecCCccCCCCC-cEEEEecCCcccCCCCCCccCCCcccccccc-CCcceEEEeCC--CcEEEEECCCEEEE
Q psy8782 287 PESHQILRVKNAMDFSAPDY-NVEPAVGSGERCLPGDEAHCGDGAPARDAKL-AYPKGVAVSAD--NILYFADGTNIRMV 362 (482)
Q Consensus 287 ~~n~~I~~~~~~~~~~~~~g-~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l-~~P~giavd~~--G~lyvaD~~nIr~i 362 (482)
.. +.|++.+ ..| +.+.+.-.... ...+.....+ .....|++++. +.||++....|.+.
T Consensus 197 ~~-ggl~~s~-------DgG~tW~~~~~~~~~----------~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s 258 (394)
T 3b7f_A 197 SS-GGVFEST-------DAGTDWKPLNRGCAA----------NFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRM 258 (394)
T ss_dssp ET-BEEEEES-------STTSSCEECCTTCCC----------TTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEE
T ss_pred CC-CCEEEEC-------CCCCCceECCCCccc----------cccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEe
Confidence 43 3576665 122 23332210000 0000000001 24678999986 78999876667766
Q ss_pred cCCCcE
Q psy8782 363 DRDGIV 368 (482)
Q Consensus 363 ~~~G~i 368 (482)
+..|.-
T Consensus 259 ~D~G~t 264 (394)
T 3b7f_A 259 DRREGV 264 (394)
T ss_dssp ETTTTE
T ss_pred CCCCCc
Confidence 655553
No 271
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=73.74 E-value=95 Score=32.76 Aligned_cols=65 Identities=6% Similarity=-0.041 Sum_probs=37.7
Q ss_pred ccEEEEcCCCC-EEEEE------CCcEEEEcCC-------C--eEEEEEeeccCCCCceeeEEEeCCCCeEEEEeC---C
Q psy8782 228 PVALATAPDGS-LFVGD------FNLIRRIMTD-------G--TVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDP---E 288 (482)
Q Consensus 228 P~giavd~~G~-lyv~D------~~~I~~i~~~-------G--~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~---~ 288 (482)
..++++.|||. |+++- .+.|+.++.+ | .+..+...... ..-.++++++.||+... .
T Consensus 235 ~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~s~dg~~l~~~s~~~~~ 309 (710)
T 2xdw_A 235 MGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEG-----EYDYVTNEGTVFTFKTNRHSP 309 (710)
T ss_dssp EEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSS-----CEEEEEEETTEEEEEECTTCT
T ss_pred EEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCc-----EEEEEeccCCEEEEEECCCCC
Confidence 34788999985 44432 2468888754 3 34554432111 11246664667887644 2
Q ss_pred CCEEEEEec
Q psy8782 289 SHQILRVKN 297 (482)
Q Consensus 289 n~~I~~~~~ 297 (482)
+.+|++++.
T Consensus 310 ~~~l~~~d~ 318 (710)
T 2xdw_A 310 NYRLINIDF 318 (710)
T ss_dssp TCEEEEEET
T ss_pred CCEEEEEeC
Confidence 568999985
No 272
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=70.59 E-value=47 Score=31.40 Aligned_cols=66 Identities=20% Similarity=0.241 Sum_probs=38.0
Q ss_pred EEEcC-CCCEEEEEC------------------CcEEEEcCC-CeEEEEEeeccCCC--------CceeeEEEeCCCCeE
Q psy8782 231 LATAP-DGSLFVGDF------------------NLIRRIMTD-GTVRTVVRLNVTRV--------AYRYHIAYSPLDGTL 282 (482)
Q Consensus 231 iavd~-~G~lyv~D~------------------~~I~~i~~~-G~v~~~~g~~~~~~--------~~p~giavd~~~g~l 282 (482)
+++.+ +|.+++... ..|++++.+ |+...+... .... .....++++|+...|
T Consensus 287 ~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~s~dg~~l 365 (396)
T 3c5m_A 287 HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKH-STSWDVLDGDRQITHPHPSFTPNDDGV 365 (396)
T ss_dssp EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEEC-CCCCCCBTTBSSTTCCCCEECTTSSEE
T ss_pred CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCC-CCccccccccccCCCCCceEccCCCeE
Confidence 67778 898777531 578888865 444433321 1110 013456888844467
Q ss_pred EEEeC--CCCEEEEEec
Q psy8782 283 YISDP--ESHQILRVKN 297 (482)
Q Consensus 283 yVaD~--~n~~I~~~~~ 297 (482)
+++.. +...|++++.
T Consensus 366 ~~~s~~~~~~~l~~~~~ 382 (396)
T 3c5m_A 366 LFTSDFEGVPAIYIADV 382 (396)
T ss_dssp EEEECTTSSCEEEEEEC
T ss_pred EEEecCCCCceEEEEEE
Confidence 66643 3446788774
No 273
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=70.19 E-value=75 Score=30.09 Aligned_cols=70 Identities=14% Similarity=0.081 Sum_probs=49.9
Q ss_pred CccEEEEcCCCCEEEEEC--Cc-EEEEcC-CCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecC
Q psy8782 227 APVALATAPDGSLFVGDF--NL-IRRIMT-DGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNA 298 (482)
Q Consensus 227 ~P~giavd~~G~lyv~D~--~~-I~~i~~-~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~ 298 (482)
....+++.|+|.++++-. +. |+.++. +|+....+..+ ........++++| ++.+.++-...+.|+.++..
T Consensus 197 ~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g-~h~~~v~~~~~s~-~~~~l~s~s~d~~v~iw~~~ 270 (355)
T 3vu4_A 197 PIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRG-LDRADVVDMKWST-DGSKLAVVSDKWTLHVFEIF 270 (355)
T ss_dssp CEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECT-TCCSCEEEEEECT-TSCEEEEEETTCEEEEEESS
T ss_pred ceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcC-CCCCcEEEEEECC-CCCEEEEEECCCEEEEEEcc
Confidence 456899999998777766 66 999985 47665554311 0223567899999 78777777777889888853
No 274
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=68.72 E-value=79 Score=29.76 Aligned_cols=64 Identities=17% Similarity=0.151 Sum_probs=37.5
Q ss_pred ccEEEEcCCCC-EEEEEC----Cc--EEEEcCC-CeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeC------------
Q psy8782 228 PVALATAPDGS-LFVGDF----NL--IRRIMTD-GTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDP------------ 287 (482)
Q Consensus 228 P~giavd~~G~-lyv~D~----~~--I~~i~~~-G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~------------ 287 (482)
+..+++.|+|. |+++.. .. |++++.+ |+...+.... . .. ++++|.+|.+++...
T Consensus 240 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~--~---~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~ 313 (396)
T 3c5m_A 240 CTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP--P---CS-HLMSNFDGSLMVGDGCDAPVDVADADS 313 (396)
T ss_dssp EEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC--S---EE-EEEECSSSSEEEEEECCC---------
T ss_pred ccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC--C---CC-CCccCCCCceEEEecCCcceeeccccc
Confidence 45678999986 555532 34 9999864 5555443211 1 12 677773444554421
Q ss_pred ----CCCEEEEEec
Q psy8782 288 ----ESHQILRVKN 297 (482)
Q Consensus 288 ----~n~~I~~~~~ 297 (482)
....|++++.
T Consensus 314 ~~~~~~~~i~~~d~ 327 (396)
T 3c5m_A 314 YNIENDPFLYVLNT 327 (396)
T ss_dssp -CCCCCCEEEEEET
T ss_pred cccCCCCcEEEEec
Confidence 3578999985
No 275
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=65.38 E-value=91 Score=29.27 Aligned_cols=123 Identities=9% Similarity=0.073 Sum_probs=61.4
Q ss_pred ccEEEEcCC---CCEEEE-EC-CcEEEEcCC-CeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCcc
Q psy8782 228 PVALATAPD---GSLFVG-DF-NLIRRIMTD-GTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDF 301 (482)
Q Consensus 228 P~giavd~~---G~lyv~-D~-~~I~~i~~~-G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~ 301 (482)
...+++.+. +.++++ .. +.|+.++.. ++....+. ..-.....++++|....++++-...+.|+.++...
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~-- 218 (408)
T 4a11_B 144 VYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQ---GHRQEILAVSWSPRYDYILATASADSRVKLWDVRR-- 218 (408)
T ss_dssp EEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEEC---CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTC--
T ss_pred eeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeec---CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCC--
Confidence 345566553 334443 33 678888743 44333332 12234578999994444677766778888888532
Q ss_pred CCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEE-ECCC-EEEEcC
Q psy8782 302 SAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFA-DGTN-IRMVDR 364 (482)
Q Consensus 302 ~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyva-D~~n-Ir~i~~ 364 (482)
....+..+-..... ....-.......-.....+++.++|..+++ ...+ |+..+.
T Consensus 219 --~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 274 (408)
T 4a11_B 219 --ASGCLITLDQHNGK-------KSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNS 274 (408)
T ss_dssp --SSCCSEECCTTTTC-------SCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred --CCcccccccccccc-------cceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEEC
Confidence 11111221110000 000000000112234678999999875544 4444 888875
No 276
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=65.30 E-value=47 Score=30.50 Aligned_cols=67 Identities=10% Similarity=0.056 Sum_probs=42.9
Q ss_pred ccEEEEcCCCCEEEEEC--CcEEEEcCCC---eEEEEEeeccCCCCceeeEEEeCC-CCeEEEEeCCCCEEEEEec
Q psy8782 228 PVALATAPDGSLFVGDF--NLIRRIMTDG---TVRTVVRLNVTRVAYRYHIAYSPL-DGTLYISDPESHQILRVKN 297 (482)
Q Consensus 228 P~giavd~~G~lyv~D~--~~I~~i~~~G---~v~~~~g~~~~~~~~p~giavd~~-~g~lyVaD~~n~~I~~~~~ 297 (482)
-..++++++|.+.++-. +.|+.++.++ +....+. ..-..-..+++++. ++.+.++-...+.|+.++.
T Consensus 12 V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~---gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~ 84 (297)
T 2pm7_B 12 IHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLT---GHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKE 84 (297)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEEC---CCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEB
T ss_pred eEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEc---cccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEc
Confidence 45788999998777655 6788887543 2222221 11123467888652 3677777777788888885
No 277
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=64.68 E-value=22 Score=37.66 Aligned_cols=70 Identities=10% Similarity=0.004 Sum_probs=40.7
Q ss_pred ccEEEEcCCCCEEEEEC-CcEEEEcCC-CeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeC--------CCCEEEEEec
Q psy8782 228 PVALATAPDGSLFVGDF-NLIRRIMTD-GTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDP--------ESHQILRVKN 297 (482)
Q Consensus 228 P~giavd~~G~lyv~D~-~~I~~i~~~-G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~--------~n~~I~~~~~ 297 (482)
+.+++..|+|.++++.. +.|+.++.+ |+...+.......-.....++++|++..|.++.. ....|+.++.
T Consensus 18 ~~~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~ 97 (719)
T 1z68_A 18 TFFPNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL 97 (719)
T ss_dssp CCCCEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred CCccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence 34677788886655555 688888854 4555554321110012467899994445555432 1367777774
No 278
>3c12_A FLGD, flagellar protein; HOOK capping, IG-like domain, FN-III domain, tudor-like domain, flagellar biogenesis, flagellum; 2.51A {Xanthomonas campestris PV}
Probab=64.34 E-value=6 Score=33.13 Aligned_cols=26 Identities=15% Similarity=0.355 Sum_probs=21.0
Q ss_pred eEEEEEcCcccCCceE-eeeEEEEEEE
Q psy8782 3 KFTYAWNRLNVYRQRV-YGVTTALVKV 28 (482)
Q Consensus 3 ~~~f~w~~~d~y~~~v-~g~~~a~v~v 28 (482)
.|.|.||++|..|.++ .|....+|+.
T Consensus 65 ~~~~~WDg~d~~G~~~~~G~Y~~~v~a 91 (138)
T 3c12_A 65 EVSFAWDGTDANGNRMAAGKYGITATQ 91 (138)
T ss_dssp EEEEEECSBCTTSCBCCSEEEEEEEEE
T ss_pred eEEEEECCcCCCCCCCCCceEEEEEEE
Confidence 4899999999999987 4777777653
No 279
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=63.48 E-value=1.1e+02 Score=29.54 Aligned_cols=71 Identities=15% Similarity=0.137 Sum_probs=38.4
Q ss_pred CccEEEEcCCCCEEEEEC--CcEEEEcCC-CeEEE-EEeeccCCCCceeeEEEeCCCCeEEEEe--CCCCEEEEEec
Q psy8782 227 APVALATAPDGSLFVGDF--NLIRRIMTD-GTVRT-VVRLNVTRVAYRYHIAYSPLDGTLYISD--PESHQILRVKN 297 (482)
Q Consensus 227 ~P~giavd~~G~lyv~D~--~~I~~i~~~-G~v~~-~~g~~~~~~~~p~giavd~~~g~lyVaD--~~n~~I~~~~~ 297 (482)
....+...++|...++-. +.|+.++.. ++... ...........-..+++.|.+..++++- ...+.|+.++.
T Consensus 232 ~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~ 308 (420)
T 4gga_A 232 EVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 308 (420)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEET
T ss_pred ceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeC
Confidence 455677788887666555 567666532 21100 0000011122345688888666666543 34578888885
No 280
>3osv_A Flagellar basal-BODY ROD modification protein FLG; FLGD, flagellum, P. aeruginosa, structural protein; 2.35A {Pseudomonas aeruginosa}
Probab=63.40 E-value=6.4 Score=32.97 Aligned_cols=25 Identities=8% Similarity=0.212 Sum_probs=18.9
Q ss_pred eEEEEEcCcccCCceEe-eeEEEEEE
Q psy8782 3 KFTYAWNRLNVYRQRVY-GVTTALVK 27 (482)
Q Consensus 3 ~~~f~w~~~d~y~~~v~-g~~~a~v~ 27 (482)
.|+|.||++|..|+++. |....+|+
T Consensus 63 ~~~f~WDG~d~~G~~~~~G~Y~~~v~ 88 (138)
T 3osv_A 63 SVSFMWDGKDSSGNIMPPGTYKFEAQ 88 (138)
T ss_dssp EEEEEECSBCTTSCBCCSEEEEEEEE
T ss_pred eEEEEECCcCCCCCCCCCccEEEEEE
Confidence 47999999999998863 55555543
No 281
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=63.00 E-value=1.6e+02 Score=31.22 Aligned_cols=51 Identities=12% Similarity=0.128 Sum_probs=28.6
Q ss_pred eEEEeCCCcEEEEECCC-EEEEcC-CCcEEEEEcCCCCCCCCCcC--CCCceEEec
Q psy8782 342 GVAVSADNILYFADGTN-IRMVDR-DGIVTTVIGNHMHKSHWKPI--PCEGTLNIE 393 (482)
Q Consensus 342 giavd~~G~lyvaD~~n-Ir~i~~-~G~i~ti~G~~~~~~~~~~~--~~dg~l~v~ 393 (482)
|......|.||+..... +|.+|. +|++.--+-.+... ...|+ ..||..||.
T Consensus 480 g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~-~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 480 GTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGV-MAAPVTYSVDGEQYVT 534 (689)
T ss_dssp CEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC-CSCCEEEEETTEEEEE
T ss_pred ccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCc-ccCceEEEECCEEEEE
Confidence 44444567788876555 999985 68865333222111 12233 357777764
No 282
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=62.52 E-value=1e+02 Score=28.74 Aligned_cols=67 Identities=18% Similarity=0.172 Sum_probs=44.4
Q ss_pred CccEEEEcCCCCEEEEEC--CcEEEEcCC--C---eEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEec
Q psy8782 227 APVALATAPDGSLFVGDF--NLIRRIMTD--G---TVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKN 297 (482)
Q Consensus 227 ~P~giavd~~G~lyv~D~--~~I~~i~~~--G---~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~ 297 (482)
....+++.|+|.++++-. +.|+.++.+ + +....+. ..-.....++++| ++.++++-...+.|+.++.
T Consensus 109 ~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~---~h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~ 182 (330)
T 2hes_X 109 EVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQ---EHSQDVKHVIWHP-SEALLASSSYDDTVRIWKD 182 (330)
T ss_dssp CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEEC---CCSSCEEEEEECS-SSSEEEEEETTSCEEEEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEec---cCCCceEEEEECC-CCCEEEEEcCCCeEEEEEC
Confidence 356899999998776655 788888752 2 2222221 2223467899999 7777777666777877763
No 283
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=61.89 E-value=39 Score=34.69 Aligned_cols=103 Identities=15% Similarity=0.077 Sum_probs=59.2
Q ss_pred EcCCC-CEEEEEC--CcEEEEcC-CCeEE-EEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCc
Q psy8782 233 TAPDG-SLFVGDF--NLIRRIMT-DGTVR-TVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYN 307 (482)
Q Consensus 233 vd~~G-~lyv~D~--~~I~~i~~-~G~v~-~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~ 307 (482)
..++| .++++-. +.|+.++. +++.. ++.+.. .......++++| ++..+++-...+.|+.++. ..+.
T Consensus 318 ~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~--~~~~v~~v~fsp-~~~~l~s~~~d~tv~lwd~------~~~~ 388 (524)
T 2j04_B 318 YSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRF--RGSNLVPVVYCP-QIYSYIYSDGASSLRAVPS------RAAF 388 (524)
T ss_dssp CCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEEC--SCCSCCCEEEET-TTTEEEEECSSSEEEEEET------TCTT
T ss_pred cCCCCCeEEEEeccCCeEEEEECCCCCccccccccc--ccCcccceEeCC-CcCeEEEeCCCCcEEEEEC------cccc
Confidence 34566 6666555 67888874 33321 222211 111235799999 7777777777778888874 2232
Q ss_pred -EEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEECC-C-EEEEcCCC
Q psy8782 308 -VEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADGT-N-IRMVDRDG 366 (482)
Q Consensus 308 -~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~~-n-Ir~i~~~G 366 (482)
+.++.|. ......|++.|+|.++++-+. . ||..++.+
T Consensus 389 ~~~~l~gH----------------------~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 389 AVHPLVSR----------------------ETTITAIGVSRLHPMVLAGSADGSLIITNAAR 428 (524)
T ss_dssp CCEEEEEC----------------------SSCEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred cceeeecC----------------------CCceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence 1223221 124568899999886665443 2 77777544
No 284
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=61.32 E-value=1.1e+02 Score=28.80 Aligned_cols=66 Identities=14% Similarity=0.092 Sum_probs=36.9
Q ss_pred CccEEEEcCCCCEEEEEC-CcEEEEcCC-CeEEEEEeec-cCCCCceeeEEEeCCCCeEEEEeCCCCEEEE
Q psy8782 227 APVALATAPDGSLFVGDF-NLIRRIMTD-GTVRTVVRLN-VTRVAYRYHIAYSPLDGTLYISDPESHQILR 294 (482)
Q Consensus 227 ~P~giavd~~G~lyv~D~-~~I~~i~~~-G~v~~~~g~~-~~~~~~p~giavd~~~g~lyVaD~~n~~I~~ 294 (482)
....|+++++|.+|++.. ..+++-+.| |+--+.+... ...-..-..|++++ ++.+|++.. ++.|++
T Consensus 206 ~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~-~~~~~~~g~-~g~i~~ 274 (327)
T 2xbg_A 206 RLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRT-PNEVWLAGG-AGALLC 274 (327)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESS-SSCEEEEES-TTCEEE
T ss_pred ccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecC-CCEEEEEeC-CCeEEE
Confidence 345788899999998877 556554345 4432222111 00111235677776 778888754 334433
No 285
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=60.93 E-value=1.7e+02 Score=30.90 Aligned_cols=16 Identities=13% Similarity=0.135 Sum_probs=12.6
Q ss_pred ceEEEecCCCeEEEEc
Q psy8782 178 SGILQKGDGSNIYLKN 193 (482)
Q Consensus 178 ~gi~~~~~g~~lyi~d 193 (482)
.+++++++++.+|+..
T Consensus 396 ~~~a~dp~~~~~yv~~ 411 (677)
T 1kb0_A 396 HPMSFNPQTGLVYLPA 411 (677)
T ss_dssp SCCEEETTTTEEEEEE
T ss_pred CCceEcCCCCEEEEeC
Confidence 4788898888888853
No 286
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=60.35 E-value=17 Score=35.30 Aligned_cols=198 Identities=13% Similarity=0.124 Sum_probs=0.0
Q ss_pred CCCcEEEEeC-CcEEEEc-CCCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCCCeEEEEcC-CC
Q psy8782 129 PDGSLFVGDF-NLIRRIM-TDGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKPRIIKTTLG-DG 205 (482)
Q Consensus 129 ~~G~lyvaD~-~~Irki~-~~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~~~i~~~~g-~G 205 (482)
.++.||++.. +.|+.++ .+|++.-....+. .....+..++..++....++.+..+.. +|
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~~~------------------~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG 69 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKEDP------------------VLQVPTHVEEPAFLPDPNDGSLYTLGSKNN 69 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEECCC------------------SCCCC-----CCEEECTTTCCEEEC-----
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecCCC------------------ceecceEcCCCEEEEeCCCCEEEEEECCCC
Q ss_pred ccccCCCcCCCCCCCceeecCCc----cEEEEcCCCCEEEEEC-CcEEEEcCC-CeEEEEEeeccCCCCceeeEEEeCCC
Q psy8782 206 HQRPLDCKDCNGEAGPKQRLLAP----VALATAPDGSLFVGDF-NLIRRIMTD-GTVRTVVRLNVTRVAYRYHIAYSPLD 279 (482)
Q Consensus 206 ~~~~~~~~~~~g~~~~~~~l~~P----~giavd~~G~lyv~D~-~~I~~i~~~-G~v~~~~g~~~~~~~~p~giavd~~~ 279 (482)
+.. ..-.+..| ...++..++.||++.. +.|+.+++. |++.-.+.........| .+
T Consensus 70 ~~~------------w~~~~~~~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~~~~~p-------~~ 130 (369)
T 2hz6_A 70 EGL------------TKLPFTIPELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFADSLSP-------ST 130 (369)
T ss_dssp CCS------------EECSCCHHHHHTTCSCC-----CCCCEEEEEEEEECCC---------------------------
T ss_pred cee------------eeeeccCccccccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCCcccccc-------cC
Q ss_pred CeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCC----CcEEEEE
Q psy8782 280 GTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSAD----NILYFAD 355 (482)
Q Consensus 280 g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~----G~lyvaD 355 (482)
+.||++ ...+.|+.++ ..+|...-...+......+++.+ +.+|++.
T Consensus 131 ~~v~~~-~~dg~v~a~d-----------------------------~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~ 180 (369)
T 2hz6_A 131 SLLYLG-RTEYTITMYD-----------------------------TKTRELRWNATYFDYAASLPEDDVDYKMSHFVSN 180 (369)
T ss_dssp --EEEE-EEEEEEECCC-----------------------------SSSSSCCCEEEEEEECCBCCCCCTTCCCCEEEEE
T ss_pred CEEEEE-ecCCEEEEEE-----------------------------CCCCCEEEeEecccccCccccCCccccceEEEEC
Q ss_pred CCC-EEEEcC-CCcEEEEEcCCCCCCCCCcCCCCceEEec
Q psy8782 356 GTN-IRMVDR-DGIVTTVIGNHMHKSHWKPIPCEGTLNIE 393 (482)
Q Consensus 356 ~~n-Ir~i~~-~G~i~ti~G~~~~~~~~~~~~~dg~l~v~ 393 (482)
... ++.+|. +|++.--...+........+..+|.+|+.
T Consensus 181 ~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~~~v~ 220 (369)
T 2hz6_A 181 GDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGLRKVM 220 (369)
T ss_dssp TSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSCEEEC
T ss_pred CCCEEEEEECCCCcEEEEecCCCceEEEEEecCCceEecc
No 287
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=58.77 E-value=1.4e+02 Score=29.32 Aligned_cols=56 Identities=11% Similarity=0.084 Sum_probs=33.8
Q ss_pred CccEEEEcCCCCE-EEEEC-CcEEEEcCCCeEEEEEeeccC-C---CCceeeEEEeCCCCeEE
Q psy8782 227 APVALATAPDGSL-FVGDF-NLIRRIMTDGTVRTVVRLNVT-R---VAYRYHIAYSPLDGTLY 283 (482)
Q Consensus 227 ~P~giavd~~G~l-yv~D~-~~I~~i~~~G~v~~~~g~~~~-~---~~~p~giavd~~~g~ly 283 (482)
.+..+++.|+|.. +++.. +.|+.++..++....+..... . ......++.++ ++.+.
T Consensus 194 ~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~-~~~~l 255 (434)
T 2oit_A 194 AVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIG-TYVFA 255 (434)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEE-TTEEE
T ss_pred ceeEEEEcCCCCEEEEEcCCCcEEEEccCCcccccccCCcccCCCCceeEEEEEEec-CceEE
Confidence 5678999999854 44555 789999988765544322111 0 11345677776 44433
No 288
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=58.62 E-value=77 Score=29.34 Aligned_cols=69 Identities=9% Similarity=0.053 Sum_probs=41.9
Q ss_pred ccEEEEcCCCCEEEEEC--CcEEEEcC-CCeEEEEEeeccCCCCceeeEEEeCC-CCeEEEEeCCCCEEEEEec
Q psy8782 228 PVALATAPDGSLFVGDF--NLIRRIMT-DGTVRTVVRLNVTRVAYRYHIAYSPL-DGTLYISDPESHQILRVKN 297 (482)
Q Consensus 228 P~giavd~~G~lyv~D~--~~I~~i~~-~G~v~~~~g~~~~~~~~p~giavd~~-~g~lyVaD~~n~~I~~~~~ 297 (482)
-..++++++|.+.++-. +.|+.++. ++....+... ...-..-..+++++. ++.+.++-...+.|+.++.
T Consensus 16 V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l-~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~ 88 (316)
T 3bg1_A 16 IHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADL-RGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWRE 88 (316)
T ss_dssp EEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEE-ECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECC
T ss_pred EEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEE-cCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEEC
Confidence 45788999998776665 67888874 3432111111 111223567888652 3666666666788888874
No 289
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=56.00 E-value=1.5e+02 Score=31.37 Aligned_cols=31 Identities=16% Similarity=0.125 Sum_probs=22.2
Q ss_pred EEEEcCCCcEEEEeCCcEEEEcCC-CeEEEEE
Q psy8782 124 ALATAPDGSLFVGDFNLIRRIMTD-GTVRTVV 154 (482)
Q Consensus 124 glavd~~G~lyvaD~~~Irki~~~-G~v~ti~ 154 (482)
.++..+||.+++.+.+.|+.++.+ |+..+++
T Consensus 21 ~~~w~~dg~~~~~~~~~i~~~~~~~~~~~~~~ 52 (740)
T 4a5s_A 21 SLRWISDHEYLYKQENNILVFNAEYGNSSVFL 52 (740)
T ss_dssp CEEECSSSEEEEEETTEEEEEETTTCCEEEEE
T ss_pred ccEECCCCcEEEEcCCcEEEEECCCCceEEEE
Confidence 578888998777766788888764 5555444
No 290
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=55.55 E-value=1.6e+02 Score=31.21 Aligned_cols=16 Identities=13% Similarity=0.216 Sum_probs=12.5
Q ss_pred ceEEEecCCCeEEEEc
Q psy8782 178 SGILQKGDGSNIYLKN 193 (482)
Q Consensus 178 ~gi~~~~~g~~lyi~d 193 (482)
.+++++++.+.+|+..
T Consensus 392 ~~~a~dp~~~~~yv~~ 407 (689)
T 1yiq_A 392 QPMSYNPDTGLVYIPA 407 (689)
T ss_dssp SCCEEETTTTEEEEEE
T ss_pred CcceECCCCCEEEEec
Confidence 4588999888888863
No 291
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=55.48 E-value=2e+02 Score=29.99 Aligned_cols=18 Identities=0% Similarity=-0.132 Sum_probs=13.6
Q ss_pred CCceEEEecCCCeEEEEc
Q psy8782 176 SPSGILQKGDGSNIYLKN 193 (482)
Q Consensus 176 ~P~gi~~~~~g~~lyi~d 193 (482)
+..+++++++++.+|+..
T Consensus 394 ~w~~~a~dp~~~~~yv~~ 411 (599)
T 1w6s_A 394 NQGHDSYDPKRELFFMGI 411 (599)
T ss_dssp CSCBCEEETTTTEEEEEE
T ss_pred CCCCccCCCCCCEEEEec
Confidence 346788999888888853
No 292
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=54.70 E-value=1.6e+02 Score=28.57 Aligned_cols=108 Identities=10% Similarity=0.057 Sum_probs=64.8
Q ss_pred CccEEEEcCCCCEEEEEC--CcEEEEcC-CCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCC
Q psy8782 227 APVALATAPDGSLFVGDF--NLIRRIMT-DGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSA 303 (482)
Q Consensus 227 ~P~giavd~~G~lyv~D~--~~I~~i~~-~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~ 303 (482)
....++++++|..+++-. +.|+.++. +|+....+.. .-.....++++ +...++-...+.|+.++..
T Consensus 312 ~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~---h~~~v~~~~~~---~~~l~s~s~dg~v~vwd~~----- 380 (464)
T 3v7d_B 312 RIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQG---HTALVGLLRLS---DKFLVSAAADGSIRGWDAN----- 380 (464)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECC---CSSCEEEEEEC---SSEEEEEETTSEEEEEETT-----
T ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeC---CCCcEEEEEEc---CCEEEEEeCCCcEEEEECC-----
Confidence 456889999987666555 78999985 5776555432 22334566765 4555555567888888852
Q ss_pred CCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEECCC-EEEEcC-CCcE
Q psy8782 304 PDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADGTN-IRMVDR-DGIV 368 (482)
Q Consensus 304 ~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~~n-Ir~i~~-~G~i 368 (482)
++........ -.....+++.+++.+.++-..+ |++.+. +|++
T Consensus 381 -~~~~~~~~~~----------------------~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g~~ 424 (464)
T 3v7d_B 381 -DYSRKFSYHH----------------------TNLSAITTFYVSDNILVSGSENQFNIYNLRSGKL 424 (464)
T ss_dssp -TCCEEEEEEC----------------------TTCCCEEEEEECSSEEEEEETTEEEEEETTTCCE
T ss_pred -CCceeeeecC----------------------CCCccEEEEEeCCCEEEEecCCeEEEEECCCCcE
Confidence 2322221110 1123456788888877665544 887774 5554
No 293
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=53.02 E-value=67 Score=34.19 Aligned_cols=56 Identities=13% Similarity=0.038 Sum_probs=33.6
Q ss_pred EEEEcCCCCEEEEECCcEEEEcC-CCeEEEEEeeccC-CCC-ceeeEEEeCCCCeEEEE
Q psy8782 230 ALATAPDGSLFVGDFNLIRRIMT-DGTVRTVVRLNVT-RVA-YRYHIAYSPLDGTLYIS 285 (482)
Q Consensus 230 giavd~~G~lyv~D~~~I~~i~~-~G~v~~~~g~~~~-~~~-~p~giavd~~~g~lyVa 285 (482)
.++..+||.+++++.+.|+.++. +|+...++..... .+. ...+++++|+...|.++
T Consensus 21 ~~~w~~dg~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~ 79 (740)
T 4a5s_A 21 SLRWISDHEYLYKQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLE 79 (740)
T ss_dssp CEEECSSSEEEEEETTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEE
T ss_pred ccEECCCCcEEEEcCCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEE
Confidence 67888888877777678888885 4555555432211 111 22457889933345444
No 294
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=52.71 E-value=1.8e+02 Score=30.16 Aligned_cols=15 Identities=13% Similarity=0.175 Sum_probs=11.1
Q ss_pred eEEEecCCCeEEEEc
Q psy8782 179 GILQKGDGSNIYLKN 193 (482)
Q Consensus 179 gi~~~~~g~~lyi~d 193 (482)
+++++++.+.+|+..
T Consensus 416 ~~a~dp~~g~~yv~~ 430 (582)
T 1flg_A 416 PMAYSQDTGLFYVPA 430 (582)
T ss_dssp CCEECTTTCCEEEEE
T ss_pred CceECCCCCEEEEec
Confidence 567888877888753
No 295
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=52.07 E-value=1.5e+02 Score=27.70 Aligned_cols=66 Identities=12% Similarity=0.051 Sum_probs=37.4
Q ss_pred cEEEEcCCCCEEEEEC-CcEEEEcCCCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEe
Q psy8782 229 VALATAPDGSLFVGDF-NLIRRIMTDGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVK 296 (482)
Q Consensus 229 ~giavd~~G~lyv~D~-~~I~~i~~~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~ 296 (482)
..|+.++++.+|++.. ..|++-.-.|+.-+.+.........-+.|++.+ ++.+|++- ..+.|++.+
T Consensus 253 ~~v~~~~~~~~~~~g~~g~i~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~-~~~~~~~G-~~G~i~~~~ 319 (327)
T 2xbg_A 253 LDLAYRTPNEVWLAGGAGALLCSQDGGQTWQQDVDVKKVPSNFYKILFFS-PDQGFILG-QKGILLRYV 319 (327)
T ss_dssp EEEEESSSSCEEEEESTTCEEEESSTTSSCEECGGGTTSSSCCCEEEEEE-TTEEEEEC-STTEEEEEC
T ss_pred EEEEecCCCEEEEEeCCCeEEEeCCCCcccEEcCccCCCCCCeEEEEEEC-CCceEEEc-CCceEEEEc
Confidence 5677788889998876 556554334543332221111112335677764 56666554 456888876
No 296
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=52.04 E-value=1.7e+02 Score=28.12 Aligned_cols=60 Identities=15% Similarity=0.160 Sum_probs=37.6
Q ss_pred CccEEEEcCC--CCEEEEECCcEEEEcCCCeEEEEEeeccCC--CCceeeEEEeCC-CCeEEEEe
Q psy8782 227 APVALATAPD--GSLFVGDFNLIRRIMTDGTVRTVVRLNVTR--VAYRYHIAYSPL-DGTLYISD 286 (482)
Q Consensus 227 ~P~giavd~~--G~lyv~D~~~I~~i~~~G~v~~~~g~~~~~--~~~p~giavd~~-~g~lyVaD 286 (482)
....|+++++ +.||++....|++.+..|+.-+.+...... ......|+++|. .+.||++-
T Consensus 233 ~~~~i~~~~~~~~~l~vg~~~gl~~s~D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t 297 (394)
T 3b7f_A 233 DPHCVVQHPAAPDILYQQNHCGIYRMDRREGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFP 297 (394)
T ss_dssp CEEEEEECSSSTTEEEEEETTEEEEEETTTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEE
T ss_pred ceeEEEECCCCCCEEEEEcCCeEEEeCCCCCcceECCCCCCCCCccceEEEEECCCCCCEEEEEe
Confidence 3578999986 789998887888887666544332210000 012346888863 46899873
No 297
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=51.47 E-value=2.2e+02 Score=29.37 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=16.7
Q ss_pred CCCcEEEEECCC-EEEEcC-CCcEEEEE
Q psy8782 347 ADNILYFADGTN-IRMVDR-DGIVTTVI 372 (482)
Q Consensus 347 ~~G~lyvaD~~n-Ir~i~~-~G~i~ti~ 372 (482)
..|.+|+.+... ++.+|. +|++.--.
T Consensus 496 agglvf~g~~dg~l~A~D~~tG~~lW~~ 523 (582)
T 1flg_A 496 AGNLVFTGTGDGYFKAFDAKSGKELWKF 523 (582)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCCEEEEECCCCcEEEEECCCCCEEEEe
Confidence 467777776655 888874 67754333
No 298
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=50.23 E-value=1.7e+02 Score=27.54 Aligned_cols=68 Identities=10% Similarity=-0.045 Sum_probs=43.3
Q ss_pred ceeeEEEeCCCCeEEEEeCCCCE-EEEEecCCccCCCCCcEE-EEe-cCCcccCCCCCCccCCCccccccccCCcceEEE
Q psy8782 269 YRYHIAYSPLDGTLYISDPESHQ-ILRVKNAMDFSAPDYNVE-PAV-GSGERCLPGDEAHCGDGAPARDAKLAYPKGVAV 345 (482)
Q Consensus 269 ~p~giavd~~~g~lyVaD~~n~~-I~~~~~~~~~~~~~g~~~-~va-G~g~~~~~g~~~~~gdg~~a~~a~l~~P~giav 345 (482)
....++++| ++.+.++-...+. |+.++. .++... .+. |. .-.....+++
T Consensus 197 ~v~~~~~s~-~g~~l~s~s~d~~~v~iwd~------~~~~~~~~~~~g~---------------------h~~~v~~~~~ 248 (355)
T 3vu4_A 197 PIKMVRLNR-KSDMVATCSQDGTIIRVFKT------EDGVLVREFRRGL---------------------DRADVVDMKW 248 (355)
T ss_dssp CEEEEEECT-TSSEEEEEETTCSEEEEEET------TTCCEEEEEECTT---------------------CCSCEEEEEE
T ss_pred ceEEEEECC-CCCEEEEEeCCCCEEEEEEC------CCCcEEEEEEcCC---------------------CCCcEEEEEE
Confidence 457899999 7777777666776 888885 344422 222 10 0123568999
Q ss_pred eCCCcEEEEECC-C-EEEEcC
Q psy8782 346 SADNILYFADGT-N-IRMVDR 364 (482)
Q Consensus 346 d~~G~lyvaD~~-n-Ir~i~~ 364 (482)
+++|.++++-+. + |++.+.
T Consensus 249 s~~~~~l~s~s~d~~v~iw~~ 269 (355)
T 3vu4_A 249 STDGSKLAVVSDKWTLHVFEI 269 (355)
T ss_dssp CTTSCEEEEEETTCEEEEEES
T ss_pred CCCCCEEEEEECCCEEEEEEc
Confidence 999987665443 3 777764
No 299
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=48.33 E-value=1e+02 Score=28.41 Aligned_cols=66 Identities=14% Similarity=0.102 Sum_probs=36.5
Q ss_pred cEEEEcC--CCCEEEEEC--CcEEEEcCC-Ce--EEEEEeeccCCCCceeeEEEeCCC-CeEEEEeCCCCEEEEEec
Q psy8782 229 VALATAP--DGSLFVGDF--NLIRRIMTD-GT--VRTVVRLNVTRVAYRYHIAYSPLD-GTLYISDPESHQILRVKN 297 (482)
Q Consensus 229 ~giavd~--~G~lyv~D~--~~I~~i~~~-G~--v~~~~g~~~~~~~~p~giavd~~~-g~lyVaD~~n~~I~~~~~ 297 (482)
..+++.+ +|+++++-. +.|+.++.. ++ ....+. ..-.....++++|.+ +.++++-...+.|+.++.
T Consensus 61 ~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~---~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~ 134 (316)
T 3bg1_A 61 WQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHA---GHDSSVNSVCWAPHDYGLILACGSSDGAISLLTY 134 (316)
T ss_dssp EEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEEC---CCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEE
T ss_pred EEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEcc---CCCCceEEEEECCCCCCcEEEEEcCCCCEEEEec
Confidence 3455543 354444433 677777743 32 222211 112245789999842 667777777777877774
No 300
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=48.15 E-value=1.5e+02 Score=26.56 Aligned_cols=66 Identities=12% Similarity=0.096 Sum_probs=38.9
Q ss_pred ccEEEEcC--CCCEEEEEC--CcEEEEcCCC----------eEEEEEeeccCCCCceeeEEEeCCC--CeEEEEeCCCCE
Q psy8782 228 PVALATAP--DGSLFVGDF--NLIRRIMTDG----------TVRTVVRLNVTRVAYRYHIAYSPLD--GTLYISDPESHQ 291 (482)
Q Consensus 228 P~giavd~--~G~lyv~D~--~~I~~i~~~G----------~v~~~~g~~~~~~~~p~giavd~~~--g~lyVaD~~n~~ 291 (482)
...+++.+ ++.++++-. +.|+.++.+. +....+ ...-.....++++| + +.++++-...+.
T Consensus 60 v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~-~~~~~~l~~~~~dg~ 135 (351)
T 3f3f_A 60 IVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTL---NDSKGSLYSVKFAP-AHLGLKLACLGNDGI 135 (351)
T ss_dssp EEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEE---CCCSSCEEEEEECC-GGGCSEEEEEETTCE
T ss_pred EEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeee---cccCCceeEEEEcC-CCCCcEEEEecCCCc
Confidence 34566666 465554433 5677776432 222222 12223467899998 5 766666666788
Q ss_pred EEEEec
Q psy8782 292 ILRVKN 297 (482)
Q Consensus 292 I~~~~~ 297 (482)
|+.++.
T Consensus 136 v~iwd~ 141 (351)
T 3f3f_A 136 LRLYDA 141 (351)
T ss_dssp EEEEEC
T ss_pred EEEecC
Confidence 988885
No 301
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=46.33 E-value=3.3e+02 Score=29.78 Aligned_cols=156 Identities=12% Similarity=0.060 Sum_probs=82.5
Q ss_pred ceEEEEcCCCc-EEEEeC-CcEEEEcCC-CeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCCCeE
Q psy8782 122 PVALATAPDGS-LFVGDF-NLIRRIMTD-GTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKPRII 198 (482)
Q Consensus 122 P~glavd~~G~-lyvaD~-~~Irki~~~-G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~~~i 198 (482)
-..|++.+ |. |..+.. +.|+..+.+ ++........ ..-..+.+++++..+++...++.|
T Consensus 61 V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~~~-----------------~~V~~v~~sp~g~~l~sgs~dg~V 122 (902)
T 2oaj_A 61 IKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVFVP-----------------GKITSIDTDASLDWMLIGLQNGSM 122 (902)
T ss_dssp EEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEECS-----------------SCEEEEECCTTCSEEEEEETTSCE
T ss_pred EEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEcCC-----------------CCEEEEEECCCCCEEEEEcCCCcE
Confidence 46788888 77 555555 778877764 4433222110 012455566677777777776666
Q ss_pred EEEcCC-CccccCCCcCCCCC-CCceeecCCccEEEEcCCC--CEEEEEC-CcEEEEcC-CCeEEEEEeecc--------
Q psy8782 199 KTTLGD-GHQRPLDCKDCNGE-AGPKQRLLAPVALATAPDG--SLFVGDF-NLIRRIMT-DGTVRTVVRLNV-------- 264 (482)
Q Consensus 199 ~~~~g~-G~~~~~~~~~~~g~-~~~~~~l~~P~giavd~~G--~lyv~D~-~~I~~i~~-~G~v~~~~g~~~-------- 264 (482)
..+.-. +....+........ ............|++.|++ .|.++.. +.| .++. .++....+....
T Consensus 123 ~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~ 201 (902)
T 2oaj_A 123 IVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGD 201 (902)
T ss_dssp EEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCST
T ss_pred EEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcc
Confidence 665432 22110000000000 0001122345688998863 3444444 566 7774 445444432110
Q ss_pred -------CCCCceeeEEEeCCCCeEEEEeCCCCEEEEEec
Q psy8782 265 -------TRVAYRYHIAYSPLDGTLYISDPESHQILRVKN 297 (482)
Q Consensus 265 -------~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~~ 297 (482)
..-.....++++| +|.++++-...+.|+.++.
T Consensus 202 ~~~~~~~~h~~~V~~v~fsp-dg~~lasgs~Dg~i~lWd~ 240 (902)
T 2oaj_A 202 FSEKTNEKRTPKVIQSLYHP-NSLHIITIHEDNSLVFWDA 240 (902)
T ss_dssp TCCCTTSCBCCCEEEEEECT-TSSEEEEEETTCCEEEEET
T ss_pred cccccccccCCCeEEEEEcC-CCCEEEEEECCCeEEEEEC
Confidence 0013467899999 7877777777788888885
No 302
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=45.25 E-value=1.4e+02 Score=30.42 Aligned_cols=66 Identities=5% Similarity=-0.061 Sum_probs=32.9
Q ss_pred cEEEEcCCCCEEEEEC-CcEEEEcCCCeEEEEEeeccCCCCceeeEEEeCCC--CeEEEEeCCCCEEEEEec
Q psy8782 229 VALATAPDGSLFVGDF-NLIRRIMTDGTVRTVVRLNVTRVAYRYHIAYSPLD--GTLYISDPESHQILRVKN 297 (482)
Q Consensus 229 ~giavd~~G~lyv~D~-~~I~~i~~~G~v~~~~g~~~~~~~~p~giavd~~~--g~lyVaD~~n~~I~~~~~ 297 (482)
..+++.|+|.++-.+. ..+.....+|.....+... -..-+.++++|.. +.++.+-...+.|+.+..
T Consensus 447 ~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh---~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l 515 (524)
T 2j04_B 447 WKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAH---GINITCTKWNETSAGGKCYAFSNSAGLLTLEYL 515 (524)
T ss_dssp EECBCCSSSCEEEECCCCCCCC-------------C---CCSCCCEEECCSTTTTTEEEEECTTSEEEEEEC
T ss_pred EEeccCCCCCeEEccCCceecccccCCcceeeecCC---CceEEEEECCCCCCccHHHHhhccCceEEEEEc
Confidence 4677788887664433 3333333345433222111 1234679999932 347777777788887773
No 303
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=42.47 E-value=3.2e+02 Score=28.62 Aligned_cols=15 Identities=7% Similarity=0.151 Sum_probs=11.9
Q ss_pred ceEEEecCCCeEEEE
Q psy8782 178 SGILQKGDGSNIYLK 192 (482)
Q Consensus 178 ~gi~~~~~g~~lyi~ 192 (482)
.+++++++.+.+|+.
T Consensus 384 ~~~a~dp~~g~~yv~ 398 (668)
T 1kv9_A 384 HSMSFNPGTGLVYIP 398 (668)
T ss_dssp SCCEEETTTTEEEEE
T ss_pred CcceECCCCCEEEEe
Confidence 458889988888885
No 304
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=41.25 E-value=62 Score=33.85 Aligned_cols=71 Identities=17% Similarity=0.179 Sum_probs=48.8
Q ss_pred CCccEEEEcCCCC-EEEEEC--CcEEEEcCC-------CeE----EEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCE
Q psy8782 226 LAPVALATAPDGS-LFVGDF--NLIRRIMTD-------GTV----RTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQ 291 (482)
Q Consensus 226 ~~P~giavd~~G~-lyv~D~--~~I~~i~~~-------G~v----~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~ 291 (482)
++|+|+-++|||. ++++.- ..+-.++-+ +++ ..+.+. ..--..|...++|+ +|+.|.+-.-..+
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae-~e~GlGPlHt~Fd~-~G~aYTtlfidSq 400 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGE-PELGLGPLHTTFDG-RGNAYTTLFIDSQ 400 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEEC-CBCCSCEEEEEECS-SSEEEEEETTTTE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEee-ccCCCcccEEEECC-CCceEeeeeecce
Confidence 6899999999995 444444 677776632 222 011111 11123699999999 8899999999999
Q ss_pred EEEEecC
Q psy8782 292 ILRVKNA 298 (482)
Q Consensus 292 I~~~~~~ 298 (482)
|.|++..
T Consensus 401 vvkWni~ 407 (638)
T 3sbq_A 401 VVKWNME 407 (638)
T ss_dssp EEEEEHH
T ss_pred EEEEecc
Confidence 9998854
No 305
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=40.04 E-value=3.4e+02 Score=28.19 Aligned_cols=46 Identities=13% Similarity=0.195 Sum_probs=25.8
Q ss_pred eCCCcEEEEECCC-EEEEcC-CCcEEEEEcCCCCCCCCCcCC--CCceEEe
Q psy8782 346 SADNILYFADGTN-IRMVDR-DGIVTTVIGNHMHKSHWKPIP--CEGTLNI 392 (482)
Q Consensus 346 d~~G~lyvaD~~n-Ir~i~~-~G~i~ti~G~~~~~~~~~~~~--~dg~l~v 392 (482)
...|.||+..... ++.+|. +|++.--.-.+... ...|+. .+|.+|+
T Consensus 482 tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~-~~~P~~y~~~G~qyv 531 (599)
T 1w6s_A 482 TAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGA-IGYPMTYTHKGTQYV 531 (599)
T ss_dssp ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC-CSCCEEEEETTEEEE
T ss_pred ecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCc-EeccEEEEeCCEEEE
Confidence 3567788876655 888884 78865433222211 123333 5666665
No 306
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=39.90 E-value=3.4e+02 Score=28.22 Aligned_cols=63 Identities=17% Similarity=0.220 Sum_probs=36.4
Q ss_pred cEEEEcCCCC-EEEEEC-C----cEEEEcC-CCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeC---CCCEEEEEec
Q psy8782 229 VALATAPDGS-LFVGDF-N----LIRRIMT-DGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDP---ESHQILRVKN 297 (482)
Q Consensus 229 ~giavd~~G~-lyv~D~-~----~I~~i~~-~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~---~n~~I~~~~~ 297 (482)
.++++.+||. |+++.. . .|+.++. ++....+..... . ...... +.++ ||+... .+.+|++++.
T Consensus 230 ~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~-~---~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~ 302 (695)
T 2bkl_A 230 LQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVG-A---KYEVHA-WKDR-FYVLTDEGAPRQRVFEVDP 302 (695)
T ss_dssp EEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSS-C---CEEEEE-ETTE-EEEEECTTCTTCEEEEEBT
T ss_pred EEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCC-c---eEEEEe-cCCc-EEEEECCCCCCCEEEEEeC
Confidence 4788899984 444432 3 6777764 456665553221 1 122223 4244 777643 4688999985
No 307
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=38.16 E-value=2.6e+02 Score=29.10 Aligned_cols=118 Identities=14% Similarity=0.131 Sum_probs=66.8
Q ss_pred CccEEEEcC-CCCEEEEEC-------------CcEEEEcCCC-eEEEEEeeccCCCCceeeEEEeCCCCeEEEEeC-CCC
Q psy8782 227 APVALATAP-DGSLFVGDF-------------NLIRRIMTDG-TVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDP-ESH 290 (482)
Q Consensus 227 ~P~giavd~-~G~lyv~D~-------------~~I~~i~~~G-~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~-~n~ 290 (482)
.+...++.+ +|.|||.-. ..+.++++.- +...+.......-.+..++++.. ++.|||.-- ...
T Consensus 187 ~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~-~g~lyv~GG~~~~ 265 (656)
T 1k3i_A 187 VPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG-NGQIVVTGGNDAK 265 (656)
T ss_dssp CCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECT-TSCEEEECSSSTT
T ss_pred CceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCC-CCCEEEeCCCCCC
Confidence 456788877 899999742 2577787643 33222221111222334567766 899999864 334
Q ss_pred EEEEEecCCccCCCCCcEEEEecCCcccCCCCCCccCCCccccccccCCcceEEEeCCCcEEEEECC--------CEEEE
Q psy8782 291 QILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADGT--------NIRMV 362 (482)
Q Consensus 291 ~I~~~~~~~~~~~~~g~~~~vaG~g~~~~~g~~~~~gdg~~a~~a~l~~P~giavd~~G~lyvaD~~--------nIr~i 362 (482)
.+++++.. ...++.+.-. + .++ .-...++-++|.|||.-.. .+.++
T Consensus 266 ~v~~yd~~------t~~W~~~~~~----------------~--~~R--~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~y 319 (656)
T 1k3i_A 266 KTSLYDSS------SDSWIPGPDM----------------Q--VAR--GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVY 319 (656)
T ss_dssp CEEEEEGG------GTEEEECCCC----------------S--SCC--SSCEEEECTTSCEEEECCCCCSSSCCCCEEEE
T ss_pred ceEEecCc------CCceeECCCC----------------C--ccc--cccceEEecCCeEEEEeCcccCCcccccceEe
Confidence 78899852 3344433210 0 001 1134566568999998761 28888
Q ss_pred cCC-CcEEEE
Q psy8782 363 DRD-GIVTTV 371 (482)
Q Consensus 363 ~~~-G~i~ti 371 (482)
|+. +.-+.+
T Consensus 320 d~~t~~W~~~ 329 (656)
T 1k3i_A 320 SPSSKTWTSL 329 (656)
T ss_dssp ETTTTEEEEE
T ss_pred CCCCCcceeC
Confidence 874 444444
No 308
>3elq_A Arylsulfate sulfotransferase; beta propeller, protein-substrate complex, periplasm, transesterification, phenol, bacteria; 2.00A {Escherichia coli} PDB: 3ett_A* 3ets_A*
Probab=37.73 E-value=3.7e+02 Score=27.91 Aligned_cols=40 Identities=15% Similarity=0.214 Sum_probs=29.0
Q ss_pred cCCcceEEEeCCC-cEEEEECCC-EEEEcCCCcEEEEEcCCC
Q psy8782 337 LAYPKGVAVSADN-ILYFADGTN-IRMVDRDGIVTTVIGNHM 376 (482)
Q Consensus 337 l~~P~giavd~~G-~lyvaD~~n-Ir~i~~~G~i~ti~G~~~ 376 (482)
..+-++|..|+.+ ++.|+-... |.+|+.+|+|.-++|...
T Consensus 354 w~HiNsv~~d~~dd~~liSsR~~~I~~Id~tG~V~W~LGg~~ 395 (571)
T 3elq_A 354 WAHVNSIAYDAKDDSIILSSRHQGVVKIGRDKQVKWILAPSK 395 (571)
T ss_dssp SCCEEEEEEETTTTEEEEEETTTEEEEEETTSCEEEEESCST
T ss_pred CcEecceeEcCCCCEEEEECCccEEEEEcCCCcEEEEECCCC
Confidence 4567788888855 555554433 888999999998887664
No 309
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=31.75 E-value=3.7e+02 Score=26.19 Aligned_cols=29 Identities=7% Similarity=0.080 Sum_probs=20.9
Q ss_pred eecCCccEEEEcCCCCEEEEECCcEEEEcC
Q psy8782 223 QRLLAPVALATAPDGSLFVGDFNLIRRIMT 252 (482)
Q Consensus 223 ~~l~~P~giavd~~G~lyv~D~~~I~~i~~ 252 (482)
..+..+..|++ .+..|+|+....|+.++.
T Consensus 85 ~~lp~V~~l~f-d~~~L~v~~~~~l~v~dv 113 (388)
T 1xip_A 85 KEIPDVIFVCF-HGDQVLVSTRNALYSLDL 113 (388)
T ss_dssp EECTTEEEEEE-ETTEEEEEESSEEEEEES
T ss_pred eeCCCeeEEEE-CCCEEEEEcCCcEEEEEc
Confidence 34555889999 335788886688888874
No 310
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=30.26 E-value=4.6e+02 Score=26.80 Aligned_cols=27 Identities=15% Similarity=0.196 Sum_probs=20.0
Q ss_pred EEEcCCCcEEEEeC-CcEEEEcC-CCeEEE
Q psy8782 125 LATAPDGSLFVGDF-NLIRRIMT-DGTVRT 152 (482)
Q Consensus 125 lavd~~G~lyvaD~-~~Irki~~-~G~v~t 152 (482)
++++ ++.||+... ++|..++. +|++.-
T Consensus 111 ~~~~-~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 111 LAYG-AGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp CEEE-TTEEEEECTTSEEEEEETTTCCEEE
T ss_pred cEEE-CCEEEEEeCCCEEEEEECCCCCEEE
Confidence 4444 678999976 78999986 687653
No 311
>3elq_A Arylsulfate sulfotransferase; beta propeller, protein-substrate complex, periplasm, transesterification, phenol, bacteria; 2.00A {Escherichia coli} PDB: 3ett_A* 3ets_A*
Probab=29.45 E-value=5e+02 Score=26.92 Aligned_cols=40 Identities=20% Similarity=0.302 Sum_probs=32.0
Q ss_pred CceeeEEEeCCCCeEEEEeCCCCEEEEEecCCccCCCCCcEEEEecCC
Q psy8782 268 AYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSG 315 (482)
Q Consensus 268 ~~p~giavd~~~g~lyVaD~~n~~I~~~~~~~~~~~~~g~~~~vaG~g 315 (482)
.|-+.|..++.++++.|+-+.. .|++|+ .+|.+..+.|..
T Consensus 355 ~HiNsv~~d~~dd~~liSsR~~-~I~~Id-------~tG~V~W~LGg~ 394 (571)
T 3elq_A 355 AHVNSIAYDAKDDSIILSSRHQ-GVVKIG-------RDKQVKWILAPS 394 (571)
T ss_dssp CCEEEEEEETTTTEEEEEETTT-EEEEEE-------TTSCEEEEESCS
T ss_pred cEecceeEcCCCCEEEEECCcc-EEEEEc-------CCCcEEEEECCC
Confidence 3457888887566899999888 999998 578999888753
No 312
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=28.35 E-value=3.1e+02 Score=24.27 Aligned_cols=65 Identities=9% Similarity=0.026 Sum_probs=33.9
Q ss_pred EEEEcCCCcEEEEeCCcEEEEcC-CCeEEEEEeeCCCcccCCCccccccccccCCceEEEecCCCeEEEEcCCCeEEEEc
Q psy8782 124 ALATAPDGSLFVGDFNLIRRIMT-DGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKPRIIKTTL 202 (482)
Q Consensus 124 glavd~~G~lyvaD~~~Irki~~-~G~v~ti~g~g~~~~~~~~~~~~~~~~~~~P~gi~~~~~g~~lyi~d~~~~i~~~~ 202 (482)
.|+..+++-|-++-.+.|+..+. +|+....+...... ..-..+.+.+++..+.....++.+....
T Consensus 30 ~l~WS~~~~lAvg~D~tV~iWd~~tg~~~~~~~~~~~~--------------~~V~~v~~~~~~~~l~sgs~Dg~v~iw~ 95 (318)
T 4ggc_A 30 LVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPG--------------EYISSVAWIKEGNYLAVGTSSAEVQLWD 95 (318)
T ss_dssp CEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCSTT--------------CCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EEEECCCCEEEEEeCCEEEEEECCCCCEEEEEEecCCC--------------CeEEEEEECCCCCEEEEEECCCcEEEee
Confidence 35666665444443377777775 46655444221100 0114556666666666666666665553
No 313
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=25.26 E-value=5.9e+02 Score=26.40 Aligned_cols=66 Identities=12% Similarity=0.029 Sum_probs=40.8
Q ss_pred cEEEEcCCCCEEEEEC----CcEEEEcC-CCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEe---CCCCEEEEEec
Q psy8782 229 VALATAPDGSLFVGDF----NLIRRIMT-DGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISD---PESHQILRVKN 297 (482)
Q Consensus 229 ~giavd~~G~lyv~D~----~~I~~i~~-~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD---~~n~~I~~~~~ 297 (482)
.++++.+++.|+++-. .+|++++. +|+....+.. ......++++++++..|+++- ..-.+|+.++.
T Consensus 339 ~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~---~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~ 412 (710)
T 2xdw_A 339 EWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPL---EVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDL 412 (710)
T ss_dssp EEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECC---CSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEET
T ss_pred EEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCC---CCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEEC
Confidence 3566666677777655 36888887 7875444322 123456677787444666652 23468888885
No 314
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=23.03 E-value=3.9e+02 Score=23.58 Aligned_cols=63 Identities=10% Similarity=-0.052 Sum_probs=36.7
Q ss_pred ccEEEEcCCCCEEEEEC--CcEEEEc-CCCeEEEEEeeccCCCCceeeEEEeCCCCeEEEEeCCCCEEEEEe
Q psy8782 228 PVALATAPDGSLFVGDF--NLIRRIM-TDGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVK 296 (482)
Q Consensus 228 P~giavd~~G~lyv~D~--~~I~~i~-~~G~v~~~~g~~~~~~~~p~giavd~~~g~lyVaD~~n~~I~~~~ 296 (482)
-..|++.++|+++++-. +.|+.++ .+++.......... .-.++++ .+.+.++-...+.++.+.
T Consensus 70 V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~-----~~~~~~~-~~~~l~s~~~~~~~~~~~ 135 (318)
T 4ggc_A 70 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSA-----RVGSLSW-NSYILSSGSRSGHIHHHD 135 (318)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS-----CEEEEEE-ETTEEEEEETTSEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccc-----eEEEeec-CCCEEEEEecCCceEeee
Confidence 35789999998776655 6788887 45665544432111 1223443 445555555556666655
Done!