RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy8782
         (482 letters)



>gnl|CDD|215497 PLN02919, PLN02919, haloacid dehalogenase-like hydrolase family
           protein.
          Length = 1057

 Score = 31.4 bits (71), Expect = 1.2
 Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 18/95 (18%)

Query: 273 IAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSG-ERCLPGDEAHCGDGAP 331
           + + P++  +YI+    HQI        ++  D       G G ER L        +G+ 
Sbjct: 688 VCFEPVNEKVYIAMAGQHQIWE------YNISDGVTRVFSGDGYERNL--------NGSS 733

Query: 332 ARDAKLAYPKGVAVSAD-NILYFAD--GTNIRMVD 363
                 A P G+++S D   LY AD   ++IR +D
Sbjct: 734 GTSTSFAQPSGISLSPDLKELYIADSESSSIRALD 768



 Score = 30.6 bits (69), Expect = 2.2
 Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 16/87 (18%)

Query: 279 DGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLA 338
           DG +Y++D  +H+I      +D +     V    G+G+       A   DG  A  A+L+
Sbjct: 814 DGQIYVADSYNHKI----KKLDPATK--RVTTLAGTGK-------AGFKDGK-ALKAQLS 859

Query: 339 YPKGVAVSADNILYFADGTN--IRMVD 363
            P G+A+  +  L+ AD  N  IR +D
Sbjct: 860 EPAGLALGENGRLFVADTNNSLIRYLD 886



 Score = 30.2 bits (68), Expect = 2.9
 Identities = 31/112 (27%), Positives = 42/112 (37%), Gaps = 25/112 (22%)

Query: 273 IAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDG--- 329
           I+ SP    LYI+D ES  I  +    D              G R L G +    D    
Sbjct: 745 ISLSPDLKELYIADSESSSIRAL----DLKT----------GGSRLLAGGDPTFSDNLFK 790

Query: 330 -----APARDAKLAYPKGVAVSADNILYFADGTN--IRMVD-RDGIVTTVIG 373
                    +  L +P GV  + D  +Y AD  N  I+ +D     VTT+ G
Sbjct: 791 FGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAG 842


>gnl|CDD|203311 pfam05706, CDKN3, Cyclin-dependent kinase inhibitor 3 (CDKN3).
           This family consists of cyclin-dependent kinase
           inhibitor 3 or kinase associated phosphatase proteins
           from several mammalian species. The cyclin-dependent
           kinase (Cdk)-associated protein phosphatase (KAP) is a
           human dual specificity protein phosphatase that
           dephosphorylates Cdk2 on threonine 160 in a
           cyclin-dependent manner.
          Length = 168

 Score = 29.2 bits (65), Expect = 2.9
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 8/48 (16%)

Query: 379 SHWKPIPCEGTLNIEEVSETMRDIRHTTGWACYGTGDNDHMTLIHCYG 426
           +H  PI   GT +I    E M ++       C     N   TLIHCYG
Sbjct: 103 THHHPIADGGTPDIASCCEIMEELT-----TCL---KNYRKTLIHCYG 142


>gnl|CDD|181501 PRK08610, PRK08610, fructose-bisphosphate aldolase; Reviewed.
          Length = 286

 Score = 29.6 bits (66), Expect = 3.2
 Identities = 26/79 (32%), Positives = 33/79 (41%), Gaps = 14/79 (17%)

Query: 279 DGTLYISDPESHQILRVKNAMDFSAP-------DYNVEPAVGSGERCLPGDEA------H 325
           DG +Y +DP+  Q L  K  +D  AP        Y  EP +G  E    G         H
Sbjct: 151 DGIIY-ADPKECQELVEKTGIDALAPALGSVHGPYKGEPKLGFKEMEEIGLSTGLPLVLH 209

Query: 326 CGDGAPARDAKLAYPKGVA 344
            G G P +D + A P G A
Sbjct: 210 GGTGIPTKDIQKAIPFGTA 228


>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme. 
          Length = 412

 Score = 29.6 bits (67), Expect = 3.4
 Identities = 10/42 (23%), Positives = 15/42 (35%)

Query: 340 PKGVAVSADNILYFADGTNIRMVDRDGIVTTVIGNHMHKSHW 381
           PKGV ++  N+L  A G   R     G    ++         
Sbjct: 146 PKGVMLTHRNLLALAAGLAERFGLTPGDRVLLLLPLHFDGSV 187


>gnl|CDD|236277 PRK08493, PRK08493, NADH dehydrogenase subunit G; Validated.
          Length = 819

 Score = 29.7 bits (67), Expect = 3.9
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 3/50 (6%)

Query: 147 DGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKNKPR 196
           DG+      L+   FEK  K      +   P   L++  G NIYL N   
Sbjct: 685 DGSNHRGYELETSSFEKSAKE---ETIECEPIKPLKEKIGINIYLANPIT 731


>gnl|CDD|215411 PLN02768, PLN02768, AMP deaminase.
          Length = 835

 Score = 29.4 bits (66), Expect = 5.0
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 7/50 (14%)

Query: 226 LAPVALATAPDGSLFVGDFNLIRRIMTDGTVRTVV--RLNVTRVAYRYHI 273
           L PVA AT      F  D + I R++  G +RT+   RLN+    +  H+
Sbjct: 315 LFPVADATT-----FFTDLHHILRVIAAGNIRTLCHHRLNLLEQKFNLHL 359


>gnl|CDD|223297 COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation,
           ribosomal structure and biogenesis].
          Length = 155

 Score = 28.3 bits (64), Expect = 5.2
 Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 5/43 (11%)

Query: 434 SVFNNSHFLDVHFSHQDQDLFYFVKE---LPQKIRDDLDELKL 473
           +    + + DV F  Q  D   F  E   LP++I D   +  +
Sbjct: 81  TTKGTTTYTDVSF--QKGDYLLFGPESRGLPEEILDAAPDRCI 121


>gnl|CDD|236070 PRK07636, ligB, ATP-dependent DNA ligase; Reviewed.
          Length = 275

 Score = 28.6 bits (64), Expect = 6.4
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 11/73 (15%)

Query: 120 LAPVALATAP-----DGSLFVGDFNLIRRIMT--DGTVRTVVRLKNQKFEKFPKILTSCF 172
           ++P+ L +A      +  +    F+ IR I +  +G +R   R  N+   KFP++L    
Sbjct: 3   ISPMLLESAKEPFNSENYITEPKFDGIRLIASKNNGLIRLYTRHNNEVTAKFPELLNLDI 62

Query: 173 LSLSPSGILQKGD 185
               P G +  G+
Sbjct: 63  ----PDGTVLDGE 71


>gnl|CDD|215590 PLN03123, PLN03123, poly [ADP-ribose] polymerase; Provisional.
          Length = 981

 Score = 29.0 bits (65), Expect = 7.1
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 148 GTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDG 186
           G VR   + + Q ++        CFL +SPS  ++K  G
Sbjct: 129 GEVRISSKPEGQGYKGLAWHHAKCFLEMSPSTPVEKLSG 167


>gnl|CDD|219689 pfam07995, GSDH, Glucose / Sorbosone dehydrogenase.  Members of
           this family are glucose/sorbosone dehydrogenases that
           possess a beta-propeller fold.
          Length = 324

 Score = 28.3 bits (64), Expect = 9.0
 Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 8/47 (17%)

Query: 228 PVALATAPDGSLFV----GDFNLIRRIMTDGTVRTVVRLNVTRVAYR 270
           P  LA  PDG L V    G    +R +  DG + T V   V  V  R
Sbjct: 3   PWGLAFLPDGRLLVTERPGR---LRLVDADGKLSTPVA-GVPEVVAR 45


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.321    0.139    0.429 

Gapped
Lambda     K      H
   0.267   0.0824    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 24,695,000
Number of extensions: 2409970
Number of successful extensions: 1986
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1983
Number of HSP's successfully gapped: 25
Length of query: 482
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 381
Effective length of database: 6,457,848
Effective search space: 2460440088
Effective search space used: 2460440088
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.1 bits)