RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8782
(482 letters)
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller,
immunoglobulin-like, structural GEN joint center for
structural genomics, JCSG; 2.23A {Bacteroides
thetaiotaomicron}
Length = 430
Score = 89.8 bits (222), Expect = 1e-19
Identities = 54/321 (16%), Positives = 96/321 (29%), Gaps = 36/321 (11%)
Query: 66 HRYNFHEGILQKGDGSNIYLKNKPRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVAL 125
N + + + ++ K ++ T LG + +G V L
Sbjct: 83 SILNDEGEEIANTEANEKFVYQKKMLVTTFLGTMYDGNTKYDLKDGPFDDCGGFGGAVWL 142
Query: 126 ATAPDGS--LFVGDFN-LIRRI-MTDGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGIL 181
+ P L++ R I V TV ++ + + + ++
Sbjct: 143 SFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSK--------VRTICWTHEADSMI 194
Query: 182 QKGDGSNIYLKNKPRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFV 241
D +N N + + + ++CNG A +G L+
Sbjct: 195 ITNDQNNNDRPNNYILTRESGFKVITELTKGQNCNG------------AETHPINGELYF 242
Query: 242 GDFN--LIRRIMTDGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAM 299
+N + R T + + + +HI + P YI H ILR
Sbjct: 243 NSWNAGQVFRYDFTTQETTPL-FTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW 301
Query: 300 DFSAPDYNVEPAVGSGERCLPGDEAHCGDGA----PARDAKLAYPKGVAVSADNILYFAD 355
P + G++ G A P + + P S + YF D
Sbjct: 302 KTK---RLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCD 358
Query: 356 GTN--IRMVDRDGIVTTVIGN 374
N IR++ G VTT G
Sbjct: 359 RENHCIRILTPQGRVTTFAGR 379
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein
of unknown function structural genomics; HET: MSE; 1.70A
{Bacteroides thetaiotaomicron vpi-5482}
Length = 409
Score = 89.2 bits (221), Expect = 2e-19
Identities = 54/312 (17%), Positives = 94/312 (30%), Gaps = 53/312 (16%)
Query: 76 QKGDGSNIYLKNKPRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFV 135
++ + + + + T G + D + + + +A + ++
Sbjct: 92 KEVTTDGTFKYEQAQNVSTISGSASKD--GNDDGDLASA---KFKYMWGIAAVGNNTVLA 146
Query: 136 GDF--NLIRRIMTDGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYLKN 193
+R I D T V F P+ K +I +
Sbjct: 147 YQRDDPRVRLISVDDNKVTTVH--------------PGFKGGKPAVTKDKQRVYSIGWEG 192
Query: 194 KPRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAP-DGSLFVGDFN--LIRRI 250
+ G + + +G A+A + L+ D N R
Sbjct: 193 THTVYVYMKASGWAPTRIGQLGSTFSGK------IGAVALDETEEWLYFVDSNKNFGRFN 246
Query: 251 MTDGTVRTVVRLNVT----RVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDY 306
+ V + +L ++ Y I Y D Y+SD + ++ PD
Sbjct: 247 VKTQEVTLIKQLELSGSLGTNPGPYLIYYFV-DSNFYMSDQNLSSVYKI-------TPDG 298
Query: 307 NVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADGTN---IRMVD 363
E GS + DG +A A P G+ V D Y DG +R +D
Sbjct: 299 ECEWFCGSAT------QKTVQDG-LREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLD 351
Query: 364 -RDGIVTTVIGN 374
DG V+TV G
Sbjct: 352 ILDGYVSTVAGQ 363
Score = 29.5 bits (66), Expect = 2.7
Identities = 4/29 (13%), Positives = 10/29 (34%), Gaps = 2/29 (6%)
Query: 118 RLLAPVALATAPDGSLFVGDF--NLIRRI 144
P + +G ++ + IR+
Sbjct: 378 TFNYPYDICYDGEGGYWIAEAWGKAIRKY 406
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic
resistance, E mechanism, virginiamycin B hydrolase
streptogramin; HET: MSE; 1.65A {Staphylococcus aureus}
PDB: 2z2o_A 2z2p_A*
Length = 299
Score = 83.9 bits (208), Expect = 3e-18
Identities = 38/259 (14%), Positives = 73/259 (28%), Gaps = 60/259 (23%)
Query: 121 APVALATAPDGSLFVGDF--NLIRRIMTDGTVRTVVRLKNQKFEKFPKILTSCFLSLSPS 178
P + + G +++ N+I I DG + P
Sbjct: 16 GPYGITVSDKGKVWITQHKANMISCINLDGKITEYP---------LPTPDAK------VM 60
Query: 179 GILQKGDGSNIYLKNKPRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGS 238
+ DG ++ T + K E AP + P+G
Sbjct: 61 CLTISSDG-EVWF--------TENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGD 111
Query: 239 LFVGDF--NLIRRIMTDGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVK 296
++ + N I RI DG +R + +Y I D L+ ++ +++ I R+
Sbjct: 112 IWFTEMNGNRIGRITDDGKIREYE--LPNKGSYPSFITLGS-DNALWFTENQNNAIGRI- 167
Query: 297 NAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADG 356
++ + P G+ D+ L+F +
Sbjct: 168 ------TESGDITEFKIPTP--------------------ASGPVGITKGNDDALWFVEI 201
Query: 357 TN--IRMVDRDGIVTTVIG 373
I + G +T
Sbjct: 202 IGNKIGRITTSGEITEFKI 220
Score = 75.1 bits (185), Expect = 3e-15
Identities = 42/258 (16%), Positives = 73/258 (28%), Gaps = 64/258 (24%)
Query: 122 PVALATAPDGSLFVGDF--NLIRRIMTDGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSG 179
+ L + DG ++ + N I RI G ++ P G
Sbjct: 59 VMCLTISSDGEVWFTENAANKIGRITKKGIIKEYTLPNPDSA---------------PYG 103
Query: 180 ILQKGDGSNIYL--KNKPRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDG 237
I + +G +I+ N RI + T DG R P + P + D
Sbjct: 104 ITEGPNG-DIWFTEMNGNRIGRIT-DDGKIREY--------ELPNK-GSYPSFITLGSDN 152
Query: 238 SLFVGDF--NLIRRIMTDGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRV 295
+L+ + N I RI G + T + I D L+ + ++I R+
Sbjct: 153 ALWFTENQNNAIGRITESGDITEFK--IPTPASGPVGITKGN-DDALWFVEIIGNKIGRI 209
Query: 296 KNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFAD 355
+ A P + A L+F +
Sbjct: 210 -------TTSGEITEFKIPTP--------------------NARPHAITAGAGIDLWFTE 242
Query: 356 GTN--IRMVDRDGIVTTV 371
I + + I+
Sbjct: 243 WGANKIGRLTSNNIIEEY 260
Score = 72.0 bits (177), Expect = 4e-14
Identities = 20/152 (13%), Positives = 46/152 (30%), Gaps = 34/152 (22%)
Query: 227 APVALATAPDGSLFVGDF--NLIRRIMTDGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYI 284
P + + G +++ N+I I DG + T A + S DG ++
Sbjct: 16 GPYGITVSDKGKVWITQHKANMISCINLDGKITEYP--LPTPDAKVMCLTISS-DGEVWF 72
Query: 285 SDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVA 344
++ +++I R+ ++ + P G+
Sbjct: 73 TENAANKIGRI-------TKKGIIKEYTLPNP--------------------DSAPYGIT 105
Query: 345 VSADNILYFADGTN--IRMVDRDGIVTTVIGN 374
+ ++F + I + DG +
Sbjct: 106 EGPNGDIWFTEMNGNRIGRITDDGKIREYELP 137
Score = 67.7 bits (166), Expect = 1e-12
Identities = 43/253 (16%), Positives = 74/253 (29%), Gaps = 64/253 (25%)
Query: 121 APVALATAPDGSLFVGDF--NLIRRIMTDGTVRTVVRLKNQKFEKFPKILTSCFLSLSPS 178
AP + P+G ++ + N I RI DG +R + PS
Sbjct: 100 APYGITEGPNGDIWFTEMNGNRIGRITDDGKIREYELPNKGSY---------------PS 144
Query: 179 GILQKGDGSNIY--LKNKPRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPD 236
I D ++ I + T G E PV + D
Sbjct: 145 FITLGSDN-ALWFTENQNNAIGRITE-SGDIT---------EFKIPTPASGPVGITKGND 193
Query: 237 GSLFVGDF--NLIRRIMTDGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILR 294
+L+ + N I RI T G + T A + I L+ ++ +++I R
Sbjct: 194 DALWFVEIIGNKIGRITTSGEITEFK--IPTPNARPHAITAGA-GIDLWFTEWGANKIGR 250
Query: 295 VKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFA 354
+ + +E + A P G+ + I +FA
Sbjct: 251 L-------TSNNIIEEYPIQIK--------------------SAEPHGICFDGETI-WFA 282
Query: 355 DGTN-IRMVDRDG 366
+ I +
Sbjct: 283 MECDKIGKLTLIK 295
Score = 39.2 bits (92), Expect = 0.002
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 335 AKLAYPKGVAVSADNILYFADGTN--IRMVDRDGIVTTV 371
+ P G+ VS ++ I ++ DG +T
Sbjct: 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLDGKITEY 50
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A
{Staphylococcus cohnii}
Length = 300
Score = 81.6 bits (202), Expect = 2e-17
Identities = 35/259 (13%), Positives = 71/259 (27%), Gaps = 60/259 (23%)
Query: 121 APVALATAPDGSLFVGDF--NLIRRIMTDGTVRTVVRLKNQKFEKFPKILTSCFLSLSPS 178
P + ++ DG ++ N I + G ++
Sbjct: 21 GPYGITSSEDGKVWFTQHKANKISSLDQSGRIKEF---------------EVPTPDAKVM 65
Query: 179 GILQKGDGSNIYLKNKPRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGS 238
++ G +I+ T G L K E Q P + +G
Sbjct: 66 CLIVSSLG-DIWF--------TENGANKIGKLSKKGGFTEYPLPQPDSGPYGITEGLNGD 116
Query: 239 LFVGDF--NLIRRIMTDGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVK 296
++ + I ++ DGT+ + +Y I D L+ ++ +++ I R+
Sbjct: 117 IWFTQLNGDRIGKLTADGTIYEYD--LPNKGSYPAFITLGS-DNALWFTENQNNSIGRI- 172
Query: 297 NAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADG 356
+E A P G+ D L+F +
Sbjct: 173 ------TNTGKLEEYPLPTN--------------------AAAPVGITSGNDGALWFVEI 206
Query: 357 TN--IRMVDRDGIVTTVIG 373
I + G ++
Sbjct: 207 MGNKIGRITTTGEISEYDI 225
Score = 74.7 bits (184), Expect = 6e-15
Identities = 40/261 (15%), Positives = 73/261 (27%), Gaps = 64/261 (24%)
Query: 122 PVALATAPDGSLFVGDF--NLIRRIMTDGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSG 179
+ L + G ++ + N I ++ G P+ + P G
Sbjct: 64 VMCLIVSSLGDIWFTENGANKIGKLSKKGGFTEY---------PLPQPDSG------PYG 108
Query: 180 ILQKGDGSNIYL--KNKPRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDG 237
I + +G +I+ N RI K T DG E + P + D
Sbjct: 109 ITEGLNG-DIWFTQLNGDRIGKLT-ADGTIY---------EYDLPNKGSYPAFITLGSDN 157
Query: 238 SLFVGDF--NLIRRIMTDGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRV 295
+L+ + N I RI G + T A I DG L+ + ++I R+
Sbjct: 158 ALWFTENQNNSIGRITNTGKLEEYP--LPTNAAAPVGITSGN-DGALWFVEIMGNKIGRI 214
Query: 296 KNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFAD 355
+ A P + ++ ++F +
Sbjct: 215 -------TTTGEISEYDIPTP--------------------NARPHAITAGKNSEIWFTE 247
Query: 356 GTN--IRMVDRDGIVTTVIGN 374
I + D +
Sbjct: 248 WGANQIGRITNDNTIQEYQLQ 268
Score = 72.0 bits (177), Expect = 4e-14
Identities = 41/251 (16%), Positives = 77/251 (30%), Gaps = 62/251 (24%)
Query: 121 APVALATAPDGSLFVGDF--NLIRRIMTDGTVRTVVRLKNQKFEKFPKILTSCFLSLSPS 178
P + +G ++ + I ++ DGT+ P + P+
Sbjct: 105 GPYGITEGLNGDIWFTQLNGDRIGKLTADGTIYEYD---------LPNKGSY------PA 149
Query: 179 GILQKGDGSNIY--LKNKPRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPD 236
I D ++ I + T G P APV + + D
Sbjct: 150 FITLGSDN-ALWFTENQNNSIGRITN-TGKLEEY--------PLPTN-AAAPVGITSGND 198
Query: 237 GSLFVGDF--NLIRRIMTDGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILR 294
G+L+ + N I RI T G + T A + I + ++ ++ ++QI R
Sbjct: 199 GALWFVEIMGNKIGRITTTGEISEY--DIPTPNARPHAITAGK-NSEIWFTEWGANQIGR 255
Query: 295 VKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFA 354
+ D ++ E A P G+ D ++FA
Sbjct: 256 I-------TNDNTIQEYQLQTE--------------------NAEPHGITFGKDGSVWFA 288
Query: 355 DGTNIRMVDRD 365
I ++ +
Sbjct: 289 LKCKIGKLNLN 299
Score = 37.7 bits (88), Expect = 0.006
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 335 AKLAYPKGVAVSADNILYFADGTN--IRMVDRDGIVTTV 371
+ P G+ S D ++F I +D+ G +
Sbjct: 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQSGRIKEF 55
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural
genomics, PSI, protein structure initiative; 1.80A
{Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Length = 270
Score = 77.3 bits (191), Expect = 5e-16
Identities = 44/266 (16%), Positives = 92/266 (34%), Gaps = 68/266 (25%)
Query: 119 LLAPVALATAPDGSLFVGDFNL---IRRIMTDGTVRTVVRLKNQKFEKFPKILTSCFLSL 175
L+P +A G+++V + + ++ T T TV+ F
Sbjct: 23 RLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL-----PFNGL----------Y 67
Query: 176 SPSGILQKGDGSNIY---LKNKPRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALA 232
P G+ G G +Y N R++ G +Q L P L P LA
Sbjct: 68 QPQGLAVDGAG-TVYVTDFNN--RVVTLAAGSNNQTVL----------PFDGLNYPEGLA 114
Query: 233 TAPDGSLFVGDF--NLIRRIMTDGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESH 290
G+++V D N + ++ +TV+ T + +A G +Y++D +++
Sbjct: 115 VDTQGAVYVADRGNNRVVKLAAGSKTQTVLP--FTGLNDPDGVAVDN-SGNVYVTDTDNN 171
Query: 291 QILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNI 350
+++++ + N + + + + P G+AV
Sbjct: 172 RVVKL-------EAESNNQVVLPFTD--------------------ITAPWGIAVDEAGT 204
Query: 351 LYFADGTN--IRMVDRDGIVTTVIGN 374
+Y + + + +TV+
Sbjct: 205 VYVTEHNTNQVVKLLAGSTTSTVLPF 230
Score = 63.0 bits (154), Expect = 3e-11
Identities = 45/265 (16%), Positives = 85/265 (32%), Gaps = 72/265 (27%)
Query: 122 PVALATAPDGSLFVGDFN--LIRRIMTDGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSG 179
P LA G+++V DFN ++ + P G
Sbjct: 69 PQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVL---PFDGLN-------------YPEG 112
Query: 180 ILQKGDGSNIYL--KNKPRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDG 237
+ G +Y+ + R++K G Q L G L P +A G
Sbjct: 113 LAVDTQG-AVYVADRGNNRVVKLAAGSKTQTVL------PFTG----LNDPDGVAVDNSG 161
Query: 238 SLFVGDF--NLIRRIMTDGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRV 295
+++V D N + ++ + + V+ T + + IA GT+Y+++ ++Q++++
Sbjct: 162 NVYVTDTDNNRVVKLEAESNNQVVLP--FTDITAPWGIAVDE-AGTVYVTEHNTNQVVKL 218
Query: 296 KNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFAD 355
+ L P VAV +D +Y AD
Sbjct: 219 -------LAGSTTSTVLPFT--------------------GLNTPLAVAVDSDRTVYVAD 251
Query: 356 GTN--IRMVDRDGIVTTVIGNHMHK 378
N + + +H H
Sbjct: 252 RGNDRVVKLTSL-------EHHHHH 269
Score = 37.2 bits (87), Expect = 0.007
Identities = 15/71 (21%), Positives = 22/71 (30%), Gaps = 13/71 (18%)
Query: 307 NVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADGTN---IRMVD 363
+ P SG+ LP G P GVAV + +Y + +
Sbjct: 3 SWSPTQASGQTVLPFT----GID------FRLSPSGVAVDSAGNVYVTSEGMYGRVVKLA 52
Query: 364 RDGIVTTVIGN 374
TTV+
Sbjct: 53 TGSTGTTVLPF 63
>3kya_A Putative phosphatase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS hydrolase; HET: MSE; 1.77A {Bacteroides
thetaiotaomicron}
Length = 496
Score = 66.9 bits (162), Expect = 5e-12
Identities = 40/317 (12%), Positives = 79/317 (24%), Gaps = 53/317 (16%)
Query: 97 GDGHQRPLDCKDCNGEAGPKQRLLAPVALATAP--DGSLFVGDF--NLIRRI-MTDGTVR 151
Q D E LA P L++ I+ I + + +
Sbjct: 116 NRDDQGWRDGPFDGPEGVKCCGFSDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLS 175
Query: 152 TVVRLKNQKFEKFPKILTSC---FLSLSPSGILQKGDGSNIYLKNKPRIIKTTLGDGHQR 208
+ + + + I + + ++ D ++ I DG
Sbjct: 176 SPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTF- 234
Query: 209 PLDCKDCNGEAGPKQRLLAPVALATAP-DGSLFVGDF--NLIRRIMTDGTVRTVV----- 260
D + P +G L+ + + R+ +T+
Sbjct: 235 -----DDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSW 289
Query: 261 -------------RLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYN 307
+ ++ + I P Y +H +R
Sbjct: 290 DPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITP 349
Query: 308 VEPAVGSGERCLPGDEAHCGDGAPARDAKLAYP--------KGVAVSADNILYFADGTN- 358
G ++ D +A++ P + YF D N
Sbjct: 350 YNFVGGYK-------QSGYRDD-VGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNF 401
Query: 359 -IRMVDRDGIVTTVIGN 374
+R V +GIV+T G
Sbjct: 402 CVRKVTPEGIVSTYAGR 418
Score = 65.3 bits (158), Expect = 1e-11
Identities = 34/289 (11%), Positives = 66/289 (22%), Gaps = 50/289 (17%)
Query: 126 ATAPDGSLFVGDFNLIRRIMTDGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGD 185
A + + + + +V + R + F+ I + +
Sbjct: 199 GYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPIN 258
Query: 186 GS-NIYLKNKPRIIK--------TTLGDGHQRPLDCKDCNGEAGP--KQRLLAPVALATA 234
G K ++ + T G P+ + N +
Sbjct: 259 GELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIH 318
Query: 235 PDGS---LFVGDFNLIRRIMTDGTVRTVVRLNV-----------------TRVAYRYHIA 274
P G V + + R D + + R+
Sbjct: 319 PTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGV 378
Query: 275 YSPL-------DGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCG 327
+ + Y D + + +V P+ V G G D G
Sbjct: 379 FVKNPDYTGEEEYDFYFVDRLNFCVRKV-------TPEGIVSTYAGRGASTSLADGNQWG 431
Query: 328 --DGAPARDAKLAYPKGVAVSAD-NILYFADGTN--IRMVDRDGIVTTV 371
DG A+ G+ + Y D IR + +
Sbjct: 432 TDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVA 480
Score = 43.8 bits (102), Expect = 1e-04
Identities = 31/234 (13%), Positives = 58/234 (24%), Gaps = 22/234 (9%)
Query: 203 GDGHQRPLDCKDCNGEAGPKQRLLAPVALATAP--DGSLFVGDF--NLIRRI-MTDGTVR 257
Q D E LA P L++ I+ I + + +
Sbjct: 116 NRDDQGWRDGPFDGPEGVKCCGFSDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLS 175
Query: 258 TVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGER 317
+ + +N IA++ Y + E + + +P + G
Sbjct: 176 SPLNINTIPTNRIRSIAFNK-KIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTF 234
Query: 318 CLPGDEAHCGDGAPARDAKLAYPKGVAVS-ADNILYFADGTN--IRMVDRDGIVTTVIGN 374
A G + + LYF + +D T+
Sbjct: 235 D--------DRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNG 286
Query: 375 HMHKSHWKPIPCEGTLNIEEVSETMRDIRHTTGWACYGTGDNDHMTLIHCYGVM 428
K P T+ D + TG + +I+ + M
Sbjct: 287 GSWDPIVKNNPNTFKQLF-----TIADPSWEFQIFIHPTGKYAYFGVINNHYFM 335
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller,
lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of
basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Length = 329
Score = 54.4 bits (131), Expect = 3e-08
Identities = 41/275 (14%), Positives = 75/275 (27%), Gaps = 56/275 (20%)
Query: 122 PVALATAPDGSLFVGDFNL--IRRIMTDGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSG 179
P L+ DG+ +V D L + ++ ++ L + + + P+
Sbjct: 93 PHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILG-----RSMQPGSDQNHFCQPTD 147
Query: 180 ILQKGDGSNIY----LKNKPRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAP 235
+ + ++ N RI++ + + P Q P +LA P
Sbjct: 148 VAVEPSTGAVFVSDGYCNS-RIVQFSPSGKFVTQWGEESSGSSPRPGQ-FSVPHSLALVP 205
Query: 236 D-GSLFVGDF--NLIRRIMTDGT--VRTV----VRLNVTRVAYRYHIAYSPLDGTLYISD 286
L V D I+ TD VR + NV ++Y ++ +G Y D
Sbjct: 206 HLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAV-NGKPYFGD 264
Query: 287 PESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVS 346
E Q + + P + S
Sbjct: 265 QEPVQGF------VMNFSSGEIIDVFKPVR------------------KHFDMPHDIVAS 300
Query: 347 ADNILYFADGTN--IRMVDRDGIVTTVIGNHMHKS 379
D +Y D + H+S
Sbjct: 301 EDGTVYIGDAHTNTVWKFTLT-------EKMEHRS 328
Score = 46.3 bits (110), Expect = 1e-05
Identities = 42/288 (14%), Positives = 80/288 (27%), Gaps = 51/288 (17%)
Query: 114 GPKQRLLAPVALATAPDGSLFVGDF--NLIRRIMTDGTVRTVVRLKNQKFEKFPKILTSC 171
G +A +L + ++ D V + + + IL
Sbjct: 18 GVYLLPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSK--FVYQQRGLGPIEEDTILVID 75
Query: 172 FLS------------LSPSGILQKGDGSNIYL--KNKPRIIKTTLGDGHQRPLDCKDCNG 217
+ P G+ DG N ++ ++ K + PL +
Sbjct: 76 PNNAEILQSSGKNLFYLPHGLSIDTDG-NYWVTDVALHQVFKLDP-HSKEGPLLILGRSM 133
Query: 218 EAGPKQ-RLLAPVALATAPD-GSLFVGDFNLIRRIM---TDGTVRTVVRLNVTRVAYR-- 270
+ G Q P +A P G++FV D RI+ G T + + R
Sbjct: 134 QPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPG 193
Query: 271 -----YHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAH 325
+ +A P L ++D E+ +I F +
Sbjct: 194 QFSVPHSLALVPHLDQLCVADRENGRIQC------FKTDTKEFVREIKHASFGRNVFA-- 245
Query: 326 CGDGAPARDAKLAYPKGVAVSADNILYFADGTNIRMVDRDGIVTTVIG 373
++Y G + + YF D ++ + +I
Sbjct: 246 -----------ISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIID 282
>2p4o_A Hypothetical protein; putative lactonase, structural genomics,
joint center for ST genomics, JCSG, protein structure
initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme}
SCOP: b.68.6.3
Length = 306
Score = 48.8 bits (116), Expect = 2e-06
Identities = 37/268 (13%), Positives = 69/268 (25%), Gaps = 74/268 (27%)
Query: 125 LATAPDGSLFVGDFNL--IRRIMTDGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQ 182
LA+APDG++FV + + I I DG + ++ + SG+
Sbjct: 37 LASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGK-----------------VSGLAF 79
Query: 183 KGDGSNIYLKNKPRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLA-------PVALATAP 235
+G ++ T + P+ ++ L +
Sbjct: 80 TSNG-DLVA---------TGWNADSIPVVSLV---KSDGTVETLLTLPDAIFLNGITPLS 126
Query: 236 DGSLFVGDFN--LIRRIMTDGTVRTVVRLNVTRVAYRYHIAYSPLDG------TLYISDP 287
D D I I ++ + + +G LY+S+
Sbjct: 127 DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNT 186
Query: 288 ESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSA 347
E +LR+ G P + A
Sbjct: 187 EKMLLLRIPVDSTDKP-------------------------GEPEIFVEQTNIDDFAFDV 221
Query: 348 DNILYFADGTN--IRMVDRDGIVTTVIG 373
+ LY A + + D T +
Sbjct: 222 EGNLYGATHIYNSVVRIAPDRSTTIIAQ 249
Score = 35.7 bits (82), Expect = 0.027
Identities = 28/193 (14%), Positives = 56/193 (29%), Gaps = 45/193 (23%)
Query: 121 APVALATAPDGSLFVGDFN-----LIRRIMTDGTVRTVVRLKNQKFEKFPKILTSCFLSL 175
LA +G L +N ++ + +DGTV T++ L + F
Sbjct: 73 KVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIF-------------- 118
Query: 176 SPSGILQKGDGSNIYL--KNKPRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALAT 233
+GI D + I + P ++
Sbjct: 119 -LNGITPLSDT-QYLTADSYRGAIWLIDVVQPSGSIWL-------EHPMLARSNSESVFP 169
Query: 234 APDGSLFVGDFNLIRRIMTDGTVRTVVRLNVTR--VAYRYHIAYSPL---------DGTL 282
A +G G+F +++ ++R+ V I +G L
Sbjct: 170 AANGLKRFGNFLY----VSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNL 225
Query: 283 YISDPESHQILRV 295
Y + + ++R+
Sbjct: 226 YGATHIYNSVVRI 238
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.4 bits (109), Expect = 2e-05
Identities = 67/495 (13%), Positives = 122/495 (24%), Gaps = 198/495 (40%)
Query: 31 KYRDC----RDIMWD-------------LQTTKLSGHDMSISEIGGWNLDIHHRYNFHEG 73
Y +C ++ + L TT+ +++ H + H
Sbjct: 242 PYENCLLVLLNV-QNAKAWNAFNLSCKILLTTR----FKQVTDFLSAATTTHISLDHHSM 296
Query: 74 ILQKGDGSNIYLKNKPRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSL 133
L + ++ LK LDC+ P+ L L T P
Sbjct: 297 TLTPDEVKSLLLKY----------------LDCR-------PQD--LPREVLTTNP---R 328
Query: 134 FVGDFNLIRRIMTDGTVRTVVRLKNQKFEKFPKILTSCFLSLSPS---------GILQKG 184
+ +I + DG K+ +K I+ S L P+ +
Sbjct: 329 RLS---IIAESIRDGLATWD-NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP-- 382
Query: 185 DGSNIYLKNKPRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGD- 243
++I P L SL D
Sbjct: 383 PSAHI-------------------------------PTILL------------SLIWFDV 399
Query: 244 -FNLIRRIMTDGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISD-PESHQILRVKNAMDF 301
+ + ++ ++V Y L+ + + + H+ +
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY--LELKVKLENEYALHRSIVDH----- 452
Query: 302 SAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADGTNIRM 361
YN+ + D D P D YF
Sbjct: 453 ----YNI-------PKTFDSD-----DLIPPYL-------------DQ--YFY------- 474
Query: 362 VDRDGIVTTVIGNHMHKSHWKPIPCEGTLNIEEVSETMRD-------IRHT-TGWACYGT 413
+ IG+H+ E + D IRH T W G+
Sbjct: 475 --------SHIGHHLKN-------IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGS 519
Query: 414 GDNDHMTLIHCYGVMQDVVTSVFNNSHFLDVH--FSHQDQDLFYFVKELPQK-IRD---D 467
N +Q + F + D + + F+ ++ + I D
Sbjct: 520 ILNT----------LQQL---KFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTD 566
Query: 468 LDELKLSSNNSNIFN 482
L + L + + IF
Sbjct: 567 LLRIALMAEDEAIFE 581
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein;
signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG;
1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Length = 628
Score = 45.6 bits (107), Expect = 3e-05
Identities = 32/148 (21%), Positives = 49/148 (33%), Gaps = 32/148 (21%)
Query: 235 PDGSLFVGDFNLIRRIMTDGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILR 294
P+ L IRRI + V + +T V + + D +Y +D I R
Sbjct: 5 PEAFLLFSRRADIRRISLETNNNNVA-IPLTGVKEASALDFDVTDNRIYWTDISLKTISR 63
Query: 295 VKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAV-SADNILYF 353
M+ S +E V G L YP+G+AV LY+
Sbjct: 64 AF--MNGS----ALEHVVEFG---------------------LDYPEGMAVDWLGKNLYW 96
Query: 354 ADGTN--IRMVDRDG-IVTTVIGNHMHK 378
AD I + DG ++ +
Sbjct: 97 ADTGTNRIEVSKLDGQHRQVLVWKDLDS 124
Score = 39.4 bits (91), Expect = 0.002
Identities = 38/206 (18%), Positives = 65/206 (31%), Gaps = 31/206 (15%)
Query: 100 HQRPLDCKDCNGEAGPKQRLLAPVALATAP-DGSLFVGDFNL--IRRIMTDGTVRTVVRL 156
++ +D + P L A+ P D L+ D IR+ DG+ V
Sbjct: 320 NRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTV-- 377
Query: 157 KNQKFEKFPKILTSCFLSLSPSGILQKGDGSNIYL--KNKPRIIKTTLGDGHQRPLDCKD 214
+ S L + P + IY + I T L + +
Sbjct: 378 -------VVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKGE 430
Query: 215 CNGEAGPKQRLLAPVALATAPD-GSLFVGDFNL----IRRIMTDGTVRTVVRLNVTRVAY 269
P A+ P+ G ++ + I R DGT R V L + ++
Sbjct: 431 ----------QDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREV--LFFSGLSK 478
Query: 270 RYHIAYSPLDGTLYISDPESHQILRV 295
+A G L+ +D + +I
Sbjct: 479 PIALALDSRLGKLFWADSDLRRIESS 504
Score = 39.0 bits (90), Expect = 0.003
Identities = 23/131 (17%), Positives = 39/131 (29%), Gaps = 24/131 (18%)
Query: 245 NLIRRIMTDGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAP 304
+ I R++ D + L + + I Y PLD LY D + I + + D S
Sbjct: 317 SAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQ--EDGS-- 372
Query: 305 DYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVS-ADNILYFADGTN--IRM 361
V S P +++ +Y+ I +
Sbjct: 373 --QGFTVVVSSV---------------PSQNLEIQPYDLSIDIYSRYIYWTCEATNVINV 415
Query: 362 VDRDGIVTTVI 372
DG V+
Sbjct: 416 TRLDGRSVGVV 426
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.0 bits (98), Expect = 5e-04
Identities = 67/336 (19%), Positives = 101/336 (30%), Gaps = 138/336 (41%)
Query: 111 GEAGPKQRLLAPVALATAPDGSLFVGDFNLIRRIMTD----GTVRTVVRLKNQKFEKFPK 166
G G Q L+ VA+A F F +R+ +T G VR E +P
Sbjct: 269 GATGHSQGLVTAVAIAETDSWESF---FVSVRKAITVLFFIG-VRC------Y--EAYPN 316
Query: 167 ILTSCFLSLSPSGILQKGDGSNIYLKNKPRIIKTTLGDGHQRP---LDCKDCNGEA---- 219
SL PS I++ +L + P L + E
Sbjct: 317 ------TSLPPS------------------ILEDSLENNEGVPSPMLSISNLTQEQVQDY 352
Query: 220 -------GPKQRLLAPVALATAPD-----G---SLFVGDFNL-IRRIMTDGTVRTVVRLN 263
P + + ++L G SL+ NL +R+ L+
Sbjct: 353 VNKTNSHLPAGKQVE-ISLVNGAKNLVVSGPPQSLYG--LNLTLRKAKAPSG------LD 403
Query: 264 VTRVAYR----------------YHIAYSPLDGTLYISDPESHQILR--VKNAMDFSAPD 305
+R+ + +H S L L P S I + VKN + F+A D
Sbjct: 404 QSRIPFSERKLKFSNRFLPVASPFH---SHL---L---VPASDLINKDLVKNNVSFNAKD 454
Query: 306 -----YNVEPAVGSGERCLPGD--EAHCGDGAPARDAKLAYP----KGVAVSADNILYF- 353
Y+ GS R L G E D + P A +IL F
Sbjct: 455 IQIPVYDTFD--GSDLRVLSGSISERIV-------DCIIRLPVKWETTTQFKATHILDFG 505
Query: 354 --------------ADGTNIRMVDRDGIVTTVIGNH 375
DGT +R++ + T+ N
Sbjct: 506 PGGASGLGVLTHRNKDGTGVRVI----VAGTLDINP 537
Score = 41.2 bits (96), Expect = 8e-04
Identities = 56/322 (17%), Positives = 92/322 (28%), Gaps = 95/322 (29%)
Query: 168 LTSCFLSLSPSGILQKGDGSNIYLKNKPRIIKTTLGDGHQRPLDCKDC-NGEAGPKQRLL 226
L S +S G++Q Y+ + LG P + + G G Q L+
Sbjct: 231 LLSIPISCPLIGVIQLAH----YV-----VTAKLLG---FTPGELRSYLKGATGHSQGLV 278
Query: 227 APVALATAPDGSLFVGDFNLIRRIMTDGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYI-S 285
VA+A F F +R+ +T + + R + AY I
Sbjct: 279 TAVAIAETDSWESF---FVSVRKAIT----------VLFFIGVRCYEAYPNTSLPPSILE 325
Query: 286 DPESHQ------ILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEA-----HCGD------ 328
D + +L + N V+ V LP + G
Sbjct: 326 DSLENNEGVPSPMLSISN-----LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVS 380
Query: 329 GAPA---------RDAKLAYPKGVAVSADNILYFADGTNIRMVDRDGIVTTV---IGNHM 376
G P R K P G+ D + I +R + + +
Sbjct: 381 GPPQSLYGLNLTLR--KAKAPSGL-----------DQSRIPFSERKLKFSNRFLPVASPF 427
Query: 377 HKSHWKPIP--CEGTLNIEEVSETMRDIR----HTTGWACYGTGDN-----DHMTLIHCY 425
H P L VS +DI+ T G + ++
Sbjct: 428 HSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTF------DGSDLRVLSGSISERIVD 481
Query: 426 GVMQDVV----TSVFNNSHFLD 443
+++ V T+ F +H LD
Sbjct: 482 CIIRLPVKWETTTQFKATHILD 503
Score = 39.3 bits (91), Expect = 0.003
Identities = 55/357 (15%), Positives = 97/357 (27%), Gaps = 124/357 (34%)
Query: 60 WNL-DIHHRYNFHEGILQKGDGSNIYLKNKPRIIKTTLGDGHQR------PLDCKDCNGE 112
WN D H + + IL +I + N + G+ +R + +
Sbjct: 1646 WNRADNHFKDTYGFSIL------DIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDG 1699
Query: 113 AGPKQRLLAPVALATAPDGSLFVGDFNLIRRIMTDGTVRTVVRLKNQKFEKFPKILT--- 169
+++ + + F + L+ T T Q P +
Sbjct: 1700 KLKTEKIFKEINEHST--SYTFRSEKGLLSA-----TQFT------Q-----PALTLMEK 1741
Query: 170 SCFLSLSPSGILQKGDGSNIYLKNKPRIIKTTLGDGHQRPLDCKDCNGE--AGPKQRLLA 227
+ F L G++ + GH L GE A LA
Sbjct: 1742 AAFEDLKSKGLIPADA---TFA-------------GH--SL------GEYAA------LA 1771
Query: 228 PVALATAPDGSLFVGDFNLIRRIMTDGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDP 287
+LA + + +V + V YR G
Sbjct: 1772 --SLA----DVMSIES---------------LVEV----VFYR---------GMTMQVAV 1797
Query: 288 ESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSA 347
++ R M A+ G + ++ G V
Sbjct: 1798 PRDELGRSNYGM----------IAINPGRVAASFSQEALQYVV----ERVGKRTGWLVEI 1843
Query: 348 --DNI---LYFADGTNIRMVDRDGIVTTVIGNHMHKSHWKPIPCEGTLNIEEVSETM 399
N+ Y A G +R +D VT V+ N + I + +L++EEV +
Sbjct: 1844 VNYNVENQQYVAAGD-LRALDT---VTNVL-NFIKLQKIDIIELQKSLSLEEVEGHL 1895
Score = 30.8 bits (69), Expect = 1.3
Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 25/84 (29%)
Query: 394 EVSETMRDIRHTTGWACYGTGDNDHMTLIHCYGV-MQDVVTSVFNNSHFLDVHFSHQDQD 452
+ S+ +D+ W D +H YG + D+V NN L +HF +
Sbjct: 1637 KTSKAAQDV-----WN---RAD-NHFK--DTYGFSILDIVI---NNPVNLTIHFGGEKG- 1681
Query: 453 LFYFVKELPQKIRDDLDELKLSSN 476
++IR++ + +
Sbjct: 1682 ---------KRIRENYSAMIFETI 1696
Score = 28.1 bits (62), Expect = 8.2
Identities = 46/263 (17%), Positives = 89/263 (33%), Gaps = 73/263 (27%)
Query: 247 IRRIMTDGTVRTVV-----RLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDF 301
I I+ + V + + R Y I + +DG L ++ +I + F
Sbjct: 1661 ILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKL-KTEKIFKEINEHSTSYTF 1719
Query: 302 SAPD------YNVEPAVGSGE----RCLPGDEAHCGDGAPARDAKLAYPKG--------- 342
+ +PA+ E L ++ G DA A G
Sbjct: 1720 RSEKGLLSATQFTQPALTLMEKAAFEDL---KSK---GLIPADATFA---GHSLGEYAAL 1770
Query: 343 VAVSADNILYFADGTNIRMV-DRDGIV--TTVIGNHMHKSHWK-----PIPCEGTLNIEE 394
+++ +++ + +V R G+ V + + +S++ P + + E
Sbjct: 1771 ASLA--DVMSIESL--VEVVFYR-GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEA 1825
Query: 395 VSETMRDIRHTTGWACYGTGDN-DHMTLIHCYGVMQ--DVVTSVFNNSHFLDVHFSHQDQ 451
+ + + TGW N ++ + G ++ D VT+V N
Sbjct: 1826 LQYVVERVGKRTGWLVEIVNYNVENQQYV-AAGDLRALDTVTNVLN-------------- 1870
Query: 452 DLFYFVKELPQKIRDDLDELKLS 474
F+K QKI D+ EL+ S
Sbjct: 1871 ----FIKL--QKI--DIIELQKS 1885
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 39.7 bits (92), Expect = 0.001
Identities = 20/142 (14%), Positives = 45/142 (31%), Gaps = 29/142 (20%)
Query: 237 GSLFVGDFNLIRRIMTDGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVK 296
LF + + +R++ D + T + N+ V + +Y SD I +
Sbjct: 2 AYLFFTNRHEVRKMTLDRSEYTSLIPNLRNV---VALDTEVASNRIYWSDLSQRMICSTQ 58
Query: 297 NAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAV-SADNILYFAD 355
+D + + + + + P G+AV + +Y+ D
Sbjct: 59 --LDRAHGVSSYDTVISRD---------------------IQAPDGLAVDWIHSNIYWTD 95
Query: 356 GTN--IRMVDRDGIVTTVIGNH 375
+ + D G+ +
Sbjct: 96 SVLGTVSVADTKGVKRKTLFRE 117
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller,
EGF-like, structural protein; 2.30A {Mus musculus} SCOP:
b.68.5.1
Length = 267
Score = 38.7 bits (90), Expect = 0.002
Identities = 18/147 (12%), Positives = 36/147 (24%), Gaps = 34/147 (23%)
Query: 239 LFVGDFNLIRRIMTDGTVRTVVRLNVTRVAYRYH---IAYSPLDGTLYISDPESHQILRV 295
L I R+ + +A+ +D +Y +D I R
Sbjct: 4 LLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRA 63
Query: 296 KNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAV-SADNILYFA 354
+ G + L P+G+A+ +++
Sbjct: 64 S--LH------------GGEPTTII-------------RQDLGSPEGIALDHLGRTIFWT 96
Query: 355 DGTN--IRMVDRDG-IVTTVIGNHMHK 378
D I + DG + +
Sbjct: 97 DSQLDRIEVAKMDGTQRRVLFDTGLVN 123
Score = 36.7 bits (85), Expect = 0.012
Identities = 29/149 (19%), Positives = 47/149 (31%), Gaps = 37/149 (24%)
Query: 237 GSLFVGD--FNLIRRIMTDGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISD--PESHQI 292
++F D + I DGT R V L T + I P+ G LY +D ++ +I
Sbjct: 91 RTIFWTDSQLDRIEVAKMDGTQRRV--LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKI 148
Query: 293 LRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAV-SADNIL 351
MD G+ R L D L P G+ + + L
Sbjct: 149 ETS--HMD------------GTNRRILAQD-------------NLGLPNGLTFDAFSSQL 181
Query: 352 YFADGTN--IRMVDRDG-IVTTVIGNHMH 377
+ D ++ V+ +
Sbjct: 182 CWVDAGTHRAECLNPAQPGRRKVLEGLQY 210
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat,
beta-propeller, translation; 1.95A {Drosophila
melanogaster} SCOP: b.68.9.1
Length = 286
Score = 38.7 bits (91), Expect = 0.003
Identities = 26/165 (15%), Positives = 55/165 (33%), Gaps = 36/165 (21%)
Query: 217 GEAGPKQ-RLLAPVALATAPDGSLF-VGDFNLIRRIM---TDGTVRTVVRLNVTRVAYRY 271
GE G + +LL P +A + V + + +I G V + T + +
Sbjct: 67 GECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQF--VRKFGATILQHPR 124
Query: 272 HIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAP 331
+ G + + + + +++ F + NV G
Sbjct: 125 GVTVDN-KGRIIVVECKVMRVII------FD-QNGNVLHKFGC----------------- 159
Query: 332 ARDAKLAYPKGVAVSADNILYFADGTN--IRMVDRDGIVTTVIGN 374
L +P GV V+ ++ +D +++ + +G IG
Sbjct: 160 --SKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGG 202
Score = 38.3 bits (90), Expect = 0.004
Identities = 41/278 (14%), Positives = 88/278 (31%), Gaps = 61/278 (21%)
Query: 111 GEAGPKQ-RLLAPVALATAPDGSLFVGDFNLIRRIM---TDGTVRTVVRLKNQKFEKFPK 166
GE G + + P +A + V D N RI +G + +F +
Sbjct: 20 GEFGVMEGQFTEPSGVAVNAQNDIIVADTNN-HRIQIFDKEGRFKF----------QFGE 68
Query: 167 ILTSCFLSLSPSGILQKGDGSNIYL---KNKPRIIKTTLGDGHQRPLDCKDCNGEAGPKQ 223
L P+ + + +I + +I G + + G
Sbjct: 69 CGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-YG--QFVRK------FGATI 119
Query: 224 RLLAPVALATAPDGSLFVGDF--NLIRRIMTDGTVRTVVRLNVTRVAYRYHIAYSPLDGT 281
L P + G + V + + +G V + + + + +
Sbjct: 120 -LQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCS-KHLEFPNGVVVND-KQE 176
Query: 282 LYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPK 341
++ISD +H + F+ + +G G+G YP
Sbjct: 177 IFISDNRAHCVKV------FN-YEGQYLRQIG-------------GEG------ITNYPI 210
Query: 342 GVAVSADNILYFADGTN---IRMVDRDGIVTTVIGNHM 376
GV ++++ + AD N + + +DG + + + + +
Sbjct: 211 GVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKV 248
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase,
structural genomics, PSI protein structure initiative;
2.01A {Deinococcus radiodurans}
Length = 296
Score = 37.0 bits (86), Expect = 0.011
Identities = 42/272 (15%), Positives = 74/272 (27%), Gaps = 71/272 (26%)
Query: 121 APVALATAPDGSLFVGD--FNLIRRIMTDGTVRTVVRLKNQKFEKFPKILTSCFLSLSPS 178
PV + ++ D N DG + + + L+
Sbjct: 32 GPVYVP--ARSAVIFSDVRQNRTWAWSDDGQLSPEMHPSHH----------QNGHCLNKQ 79
Query: 179 GIL---QKGDGSNIYLKNKPRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAP 235
G L G R+ + G + + G ++L +P + AP
Sbjct: 80 GHLIACSHGLR---------RLERQREPGGEWESI----ADSFEG--KKLNSPNDVCLAP 124
Query: 236 DGSLFVGDFNLIRRIMTDGTVRT-------VVRLN----VTRVAYRYH----IAYSPLDG 280
DGSL+ D +G V RL ++ +A+ P G
Sbjct: 125 DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLSAPIRDRVKPNGLAFLP-SG 183
Query: 281 TLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYP 340
L +SD + R N G D
Sbjct: 184 NLLVSDTGDNATHRY---------CLNARGETEYQGVH-----FTVEPGKT--D------ 221
Query: 341 KGVAVSADNILYFADGTNIRMVDRDGIVTTVI 372
G+ V A +++ + G + ++ DG +
Sbjct: 222 -GLRVDAGGLIWASAGDGVHVLTPDGDELGRV 252
>2qe8_A Uncharacterized protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc
29413}
Length = 343
Score = 36.3 bits (83), Expect = 0.019
Identities = 31/188 (16%), Positives = 60/188 (31%), Gaps = 28/188 (14%)
Query: 126 ATAPDGSLFVGDFNLIRRIMTDGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGD 185
AP+ V D ++ DGTV L + L +
Sbjct: 166 GIAPEDIDLVIDGVPVQIGQPDGTV-------------IRPHLGVNGIVLDA-------E 205
Query: 186 GSNIYLK--NKPRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGD 243
+YL + + + D L + + ++ D +++VGD
Sbjct: 206 NEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGD 265
Query: 244 F--NLIRRIMT-DGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMD 300
+ I I + D + +V ++++ + DG LY + H + +
Sbjct: 266 LAHSAIGVITSADRAYKLLVT--DEKLSWTDSFNFGS-DGYLYFDCNQLHHSAPLNAGEN 322
Query: 301 FSAPDYNV 308
SAP Y +
Sbjct: 323 ISAPPYYI 330
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.2 bits (77), Expect = 0.036
Identities = 5/26 (19%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 288 ESHQILRVKNAMDFSAPDYNVEPAVG 313
E + +++ ++ A D PA+
Sbjct: 18 EKQALKKLQASLKLYADD--SAPALA 41
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL
receptor-like protein, dickko YWTD B-propeller,
signaling protein; HET: NAG; 2.80A {Homo sapiens}
Length = 619
Score = 35.6 bits (81), Expect = 0.037
Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 30/132 (22%)
Query: 247 IRRIMTDGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKNAMDFSAPDY 306
+RRI D T + L + + + I Y P++G +Y +D E I R +D
Sbjct: 328 LRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSF--ID------ 379
Query: 307 NVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVS-ADNILYFADGTN--IRMVD 363
GSG + + A++A+P G+AV LY+ D I +
Sbjct: 380 ------GSGSQFVV-------------TAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTR 420
Query: 364 RDGIVTTVIGNH 375
+G + ++ +
Sbjct: 421 LNGTMRKILISE 432
Score = 31.7 bits (71), Expect = 0.56
Identities = 23/138 (16%), Positives = 40/138 (28%), Gaps = 32/138 (23%)
Query: 239 LFVGDFNLIRRI-MTDGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVKN 297
L + +R + T+G + + A + + G +Y SD I R
Sbjct: 12 LLYANRRDLRLVDATNGKENATIVVGGLEDAA--AVDFVFSHGLIYWSDVSEEAIKRT-- 67
Query: 298 AMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAV-SADNILYFADG 356
E+ + L P G+A LY+ D
Sbjct: 68 --------------------EFNKTESV----QNVVVSGLLSPDGLACDWLGEKLYWTDS 103
Query: 357 TN--IRMVDRDGIVTTVI 372
I + + DG + V+
Sbjct: 104 ETNRIEVSNLDGSLRKVL 121
Score = 28.6 bits (63), Expect = 6.0
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Query: 225 LLAPVALATAPDGS-LFVGD--FNLIRRIMTDGTVRTVVRLNVTRVAYRYHIAYSPLDGT 281
LL+P LA G L+ D N I DG++R V L + IA P G
Sbjct: 83 LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV--LFWQELDQPRAIALDPSSGF 140
Query: 282 LYISD 286
+Y +D
Sbjct: 141 MYWTD 145
Score = 28.6 bits (63), Expect = 6.0
Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 8/74 (10%)
Query: 228 PVALATAP-DGSLFVGDFNL--IRRIMTDGT--VRTVVRLNVTRVAYRYHIAYSPLDGTL 282
A+ G ++ D + I+R + T V+ VV + +A L L
Sbjct: 42 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSP---DGLACDWLGEKL 98
Query: 283 YISDPESHQILRVK 296
Y +D E+++I
Sbjct: 99 YWTDSETNRIEVSN 112
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 35.0 bits (80), Expect = 0.047
Identities = 26/142 (18%), Positives = 46/142 (32%), Gaps = 32/142 (22%)
Query: 235 PDGSLFVGDFNLIRRI-MTDGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQIL 293
L + +R + T+G + V + + + G +Y SD I
Sbjct: 3 SAPLLLYANRRDLRLVDATNGKENAT--IVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIK 60
Query: 294 RVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAV-SADNILY 352
R + + + +V+ V SG L P G+A LY
Sbjct: 61 RTE--FNKTE---SVQNVVVSG---------------------LLSPDGLACDWLGEKLY 94
Query: 353 FADGTN--IRMVDRDGIVTTVI 372
+ D I + + DG + V+
Sbjct: 95 WTDSETNRIEVSNLDGSLRKVL 116
Score = 33.5 bits (76), Expect = 0.13
Identities = 35/184 (19%), Positives = 65/184 (35%), Gaps = 30/184 (16%)
Query: 221 PKQRLLAPVALATAP-DGSLFVGDFNL--IRRIMTDGT--VRTVVRLNVTRVAYRYHIAY 275
L A+ G ++ D + I+R + T V+ VV + +A
Sbjct: 30 VVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSP---DGLAC 86
Query: 276 SPLDGTLYISDPESHQILRVKN---------AMDFSAP-DYNVEPAVGSGERCLPGDEAH 325
L LY +D E+++I + P ++P+ G G+
Sbjct: 87 DWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPK 146
Query: 326 CG----DGAPAR---DAKLAYPKGVAVSADNI-LYFADGTN--IRMVDRDG--IVTTVIG 373
DG+ ++++ +P G+ + + LY+AD I + DG V G
Sbjct: 147 IERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKG 206
Query: 374 NHMH 377
+ H
Sbjct: 207 SLPH 210
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus
aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Length = 333
Score = 32.4 bits (74), Expect = 0.33
Identities = 14/114 (12%), Positives = 28/114 (24%), Gaps = 31/114 (27%)
Query: 231 LATAPDGSLFVGDFNLIR--------RIMTDGTVRTVVRLNVTRVAYRYH----IAYSPL 278
+ G + DF + D VT + IA S
Sbjct: 140 MVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR-------TVTPIIQNISVANGIALST- 191
Query: 279 DG-TLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAP 331
D L++++ ++++ R+ + G P
Sbjct: 192 DEKVLWVTETTANRLHRI---------ALEDDGVTIQPFGATI-PYYFTGHEGP 235
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta
propeller, unknown function; 1.99A {Leptospira
interrogans}
Length = 433
Score = 32.2 bits (73), Expect = 0.44
Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 9/74 (12%)
Query: 227 APVALATAPDGS-LFVGDFNLIRRIMTDGTVRTVVRLNVTRVAYR-------YHIAYSPL 278
P L + DG L++ F+ + G + + ++ ++ HI
Sbjct: 255 LPRGLLLSKDGKELYIAQFSASNQESGGGRL-GIYSMDKEKLIDTIGPPGNKRHIVSGNT 313
Query: 279 DGTLYISDPESHQI 292
+ +Y+SD +I
Sbjct: 314 ENKIYVSDMCCSKI 327
Score = 30.3 bits (68), Expect = 1.5
Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 7/77 (9%)
Query: 220 GPKQRLLAPVALATAPDGS-LFVGDF--NLIRRIMTDGTVRTVV-RLNVTRVAYRYHIAY 275
++ L V + P+ + L+V N + D +++T + + Y
Sbjct: 163 EKYKKKLGFVETISIPEHNELWVSQMQANAVHVF--DLKTLAYKATVDLTG-KWSKILLY 219
Query: 276 SPLDGTLYISDPESHQI 292
P+ +Y S+ S I
Sbjct: 220 DPIRDLVYCSNWISEDI 236
Score = 28.3 bits (63), Expect = 5.8
Identities = 33/200 (16%), Positives = 62/200 (31%), Gaps = 57/200 (28%)
Query: 121 APVALATAPDGS-LFVGDFNLIRRIMTDGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSG 179
P L + DG L++ F+ + G + + + +K I +
Sbjct: 255 LPRGLLLSKDGKELYIAQFSASNQESGGGRL-GIYSMDKEKLID--TIGPP----GNKRH 307
Query: 180 ILQKGDGSNIYLKN------------KPRIIKT-TLGDGHQRPLDCKDCNGEAGPKQRLL 226
I+ + IY+ + + ++ K+ + D
Sbjct: 308 IVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDK--------------------- 346
Query: 227 APVALATAPDGS-LFV----GDFNLIRRIMTDGTVRTVVRLNVT--RVAYR-------YH 272
P +A +PDG L+V + + + V ++ T V
Sbjct: 347 -PNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTG 405
Query: 273 IAYSPLDGTLYISDPESHQI 292
+ SP + L ISD HQI
Sbjct: 406 LDVSPDNRYLVISDFLDHQI 425
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase;
2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A*
2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Length = 322
Score = 30.8 bits (69), Expect = 0.87
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 23/136 (16%)
Query: 233 TAPDGSLFVGDFN--LIRRIMTDGTVRTVV-RLNVTRVAYRYHIAYSPLDGTLYISDPES 289
+ L++ D L G + ++ + Y + G +Y +D +
Sbjct: 88 NLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVST 147
Query: 290 -HQILRVKNAMDFSAPD---YNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAV 345
+ V+ MD S +P+ L L P G V
Sbjct: 148 LYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKE---------------LHVPGGAEV 192
Query: 346 SAD-NILYFADGTNIR 360
SAD + + A+ + +
Sbjct: 193 SADSSFVLVAEFLSHQ 208
Score = 28.5 bits (63), Expect = 4.8
Identities = 11/80 (13%), Positives = 21/80 (26%), Gaps = 11/80 (13%)
Query: 228 PVALATAPDGSLFVGDFNLIRRIMTDGTVRTVVRLN-----VTRVAYRYHIAYSPL---- 278
P + DG +V + M ++ + + + A
Sbjct: 231 PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQ 290
Query: 279 --DGTLYISDPESHQILRVK 296
DG LYI + +
Sbjct: 291 EHDGLLYIGTLFHGSVGILV 310
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30,
six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A
{Xanthomonas campestris PV}
Length = 305
Score = 30.8 bits (70), Expect = 1.0
Identities = 50/263 (19%), Positives = 76/263 (28%), Gaps = 61/263 (23%)
Query: 128 APDGSLFVGDF--NLIRRIMTDGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGILQKGD 185
+L D + DGTV ++ +G
Sbjct: 54 EAQRTLVWSDLVGRRVLGWREDGTVDVLLDATAF-----------------TNGNAVDAQ 96
Query: 186 GSNIYLKNKPRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDFN 245
++ ++ R I + DG L AG +RL +P L A DG+++ D
Sbjct: 97 QRLVHCEHGRRAITRSDADGQAHLL----VGRYAG--KRLNSPNDLIVARDGAIWFTDPP 150
Query: 246 LIRRIMTDGTVRT-------VVRLN----VTRVAYRYH----IAYSPLDG-TLYISDPES 289
R + G V RL + +A+SP D TLY+S
Sbjct: 151 FGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMADLDHPNGLAFSP-DEQTLYVSQTPE 209
Query: 290 HQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSADN 349
+ R A DG P D G V
Sbjct: 210 QGHGS------VEITAFAWRDGALHDRRHF----ASVPDGLP--D-------GFCVDRGG 250
Query: 350 ILYFADGTNIRMVDRDGIVTTVI 372
L+ + GT + + D DG + I
Sbjct: 251 WLWSSSGTGVCVFDSDGQLLGHI 273
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller,
structural genomics, PSI-2, Pro structure initiative;
1.90A {Bacteroides uniformis}
Length = 328
Score = 30.8 bits (69), Expect = 1.1
Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Query: 227 APVALATAPDGS-LFVGDFNLIRRIMTDGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYIS 285
P + L+ + N I R+ + V R Y + +P +G +Y++
Sbjct: 226 WPSEVQLNGTRDTLYWIN-NDIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVA 284
Query: 286 D 286
D
Sbjct: 285 D 285
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller
superfamily, protein binding; HET: YCM; 2.40A
{Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Length = 391
Score = 30.1 bits (68), Expect = 1.8
Identities = 14/73 (19%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
Query: 227 APVALATAPDGS-LFVGDF--NLIRRIMTDGTVRTVV-RLNVTRVAYRYHIAYSPLDGTL 282
P+ +PDG+ ++V + N + I D V+ + +A SP +
Sbjct: 33 NPMGAVISPDGTKVYVANAHSNDVSII--DTATNNVIATVPAGSSPQ--GVAVSPDGKQV 88
Query: 283 YISDPESHQILRV 295
Y+++ S + +
Sbjct: 89 YVTNMASSTLSVI 101
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center for structural genomi
CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Length = 331
Score = 29.4 bits (66), Expect = 2.4
Identities = 19/158 (12%), Positives = 42/158 (26%), Gaps = 30/158 (18%)
Query: 227 APVALATAPDGS-LFVGDF--NLIRRI--MTDGTVRTVVRLNVTRVAYRYHIAYSPLDGT 281
P + PDG+ FV + N I + + + + + I S T
Sbjct: 177 RPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPG--TIVVSRDGST 234
Query: 282 LYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPK 341
+Y+ + + F+ + G L L
Sbjct: 235 VYVLTESTVDVFN------FNQLSGTLSFVKSFGHGLLIDPRP------------LFGAN 276
Query: 342 GVAVSAD-NILYFADGT--NIRMVDRDG--IVTTVIGN 374
+A++ L+ + +++ G +
Sbjct: 277 QMALNKTETKLFISANISRELKVFTISGKVVGYVAGIE 314
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A
{Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Length = 349
Score = 29.3 bits (65), Expect = 3.0
Identities = 25/152 (16%), Positives = 40/152 (26%), Gaps = 15/152 (9%)
Query: 227 APVALATAPDGSLFV--GDFNLIRRIMTDGTVRTVVRLNVTRVAYR-YHIAYSPLDG-TL 282
A A + N + + D TV + V + +P D T
Sbjct: 1 ADTGPALKAGHEYMIVTNYPNNLHVV--DVASDTVYKSCVMPDKFGPGTAMMAP-DNRTA 57
Query: 283 YISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKG 342
Y+ + I + D N A S G + A + D K Y
Sbjct: 58 YVLNNHYGDIYGI----DLDTCK-NTFHANLSSVPGEVGRSMY--SFAISPDGKEVYATV 110
Query: 343 VAVSADNILYFADGTNIRMVD-RDGIVTTVIG 373
N Y + + DG+ +
Sbjct: 111 NPTQRLNDHYVVKPPRLEVFSTADGLEAKPVR 142
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE),
nitrogen-calcium coordination, BET propeller; HET: ME2
MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB:
1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A
2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A
2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Length = 314
Score = 28.9 bits (65), Expect = 3.4
Identities = 16/135 (11%), Positives = 41/135 (30%), Gaps = 22/135 (16%)
Query: 177 PSGILQKGDGSNIYLKNKPRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPD 236
P+G D + +++ + + DG + KD G R+ A +
Sbjct: 73 PAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGR-----RMQGCNDCAFDYE 127
Query: 237 GSLFVGDFNLIRRIMTDGTVRT-----VVRLN----VTRVAYRYH----IAYSPLD---- 279
G+L++ + + +V + IA ++
Sbjct: 128 GNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQFPNGIAVRHMNDGRP 187
Query: 280 GTLYISDPESHQILR 294
L +++ + ++
Sbjct: 188 YQLIVAETPTKKLWS 202
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane,
secreted, protease, PALM hydrolase, developmental
protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo
sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Length = 463
Score = 28.8 bits (64), Expect = 4.3
Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 225 LLAPVALATAPDGS--LFVGDFN-LIRRIMTDGTVRTVVRLNVTRVAY 269
L PV + DGS LF+ + ++ + +G + L++ ++
Sbjct: 13 LRQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQ 60
>2ov8_A STAL; sulfotransferase, structural genomics, montr kingston
bacterial structural genomics initiative, BSGI, UN
function; 2.58A {Streptomyces toyocaensis} PDB: 2ovb_A
2ovf_A*
Length = 288
Score = 28.1 bits (63), Expect = 5.6
Identities = 6/32 (18%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 63 DIHHRYNFHEGILQKGDGSNIYLKNKPRIIKT 94
I EG+L+ G+ + ++ ++ T
Sbjct: 54 GIQAGVPHLEGLLRDGE-APSADPDEQVLLAT 84
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1
type, retrotransposition, retrotransposon, transferase;
1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Length = 238
Score = 27.9 bits (63), Expect = 6.5
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 8/54 (14%)
Query: 42 LQTTKLSGHDMSISEIGGWNLDIHHRYNFHEGILQKG-DGSNIYLKNKPRIIKT 94
+Q T L+ D +I GW Y + ++ G I + +K T
Sbjct: 41 IQETHLTCRDTHRLKIKGW----RKIYQANG---KQKKAGVAILVSDKTDFKPT 87
>2a3l_A AMP deaminase, AMPD; atampd, AT2G38280, adenosine 5'-monophosphate
deaminase, COF 5'-phosphate, structural genomics; HET:
CF5; 3.34A {Arabidopsis thaliana} SCOP: c.1.9.1
Length = 701
Score = 28.5 bits (63), Expect = 6.6
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 129 PDGSLFVGDFNLIRRIMTDGTVRTVV--RLK--NQKFEKF 164
D + F D + + +++ G +RT+ RL QKF
Sbjct: 185 ADATAFFTDLHHVLKVIAAGNIRTLCHRRLVLLEQKFNLH 224
>2dep_A Xylanase B, thermostable celloxylanase; glycosidase, xylan
degradation, family 10, structural genomics, NPPSFA;
1.80A {Clostridium stercorarium}
Length = 356
Score = 27.9 bits (62), Expect = 7.1
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 126 ATAPDGSLFVGDFNLIRRIMTDGTVRTVVRLKNQK 160
A D L++ D+N + D V L +
Sbjct: 180 AGGSDIKLYINDYNTDDPVKRDILYELVKNLLEKG 214
>1ur1_A Endoxylanase; hydrolase, family 10, glycoside hydrolase,
hemicellulose, xylan degradation; HET: XYS AHR; 1.43A
{Cellvibrio mixtus} SCOP: c.1.8.3 PDB: 1uqy_A* 1uqz_A*
1ur2_A* 2cnc_A*
Length = 378
Score = 28.0 bits (62), Expect = 7.2
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 124 ALATAPDGSLFVGDFNLIRRIMTDGTVRTVVRLKNQK 160
A P L D+N+ R + TV + RL+ +
Sbjct: 186 ANEVDPKAHLMYNDYNIERTGKREATVEMIERLQKRG 222
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding;
1.70A {Escherichia coli} PDB: 3vh0_A*
Length = 353
Score = 27.8 bits (62), Expect = 8.5
Identities = 7/75 (9%), Positives = 22/75 (29%), Gaps = 12/75 (16%)
Query: 227 APVALATAPDGS-LFVGDFNLIRRIMTDGTV--------RTVVRLNVTRVAYRYHIAYSP 277
+A + + L++ R++ G V ++ + +
Sbjct: 42 GAYEMAYSQQENALWLATSQS-RKLDKGGVVYRLDPVTLEVTQAIHNDLKPF--GATINN 98
Query: 278 LDGTLYISDPESHQI 292
TL+ + + +
Sbjct: 99 TTQTLWFGNTVNSAV 113
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp,
lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Length = 829
Score = 27.9 bits (62), Expect = 9.9
Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 378 KSHWKPIPCE-GTLNIEEVSETMRDIRHTTGWACYGTGDNDHMTLI 422
K H I G N +E M ++ TTG + G HMT I
Sbjct: 369 KEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIHVFGTETHMTAI 414
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.139 0.429
Gapped
Lambda K H
0.267 0.0490 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,661,658
Number of extensions: 477403
Number of successful extensions: 1313
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1165
Number of HSP's successfully gapped: 116
Length of query: 482
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 385
Effective length of database: 3,993,456
Effective search space: 1537480560
Effective search space used: 1537480560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.1 bits)