RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8782
(482 letters)
>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 279
Score = 43.1 bits (100), Expect = 4e-05
Identities = 19/134 (14%), Positives = 37/134 (27%), Gaps = 10/134 (7%)
Query: 333 RDAKLAYPKGVAVSADNILYFADGTN--IRMVDRDGIVTTVIGNHMHKSHWKPIPCEGTL 390
+ + P GVAV+A N + AD N I++ D++G G + P +
Sbjct: 18 MEGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAV 77
Query: 391 NIEEV--------SETMRDIRHTTGWACYGTGDNDHMTLIHCYGVMQDVVTSVFNNSHFL 442
I + G G + + V +
Sbjct: 78 VRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRV 137
Query: 443 DVHFSHQDQDLFYF 456
+ + + +
Sbjct: 138 IIFDQNGNVLHKFG 151
>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 266
Score = 33.0 bits (74), Expect = 0.061
Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 239 LFVGDFNLIRRIMTDGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVK 296
LF + + +R++ D + T + N+ V + +Y SD I +
Sbjct: 4 LFFTNRHEVRKMTLDRSEYTSLIPNLRNV---VALDTEVASNRIYWSDLSQRMICSTQ 58
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 260
Score = 32.5 bits (72), Expect = 0.093
Identities = 41/265 (15%), Positives = 79/265 (29%), Gaps = 27/265 (10%)
Query: 120 LAPVALATAPDGSLFV---GDFNLIRRIMTDGTVRTVVRLKNQKFEKFPKILTSCFLSLS 176
L+P +A G+++V G + + ++ T T TV+
Sbjct: 14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLY---------------Q 58
Query: 177 PSGILQKGDGSNIYLKNKPRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPD 236
P G+ G G+ R++ G +Q L N G V +A +
Sbjct: 59 PQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGN 118
Query: 237 GSLFVGDFNLIRRIMTDGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPESHQILRVK 296
+ + + T + ++ + + + + ++Q++
Sbjct: 119 NRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPF 178
Query: 297 NAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPAR----DAKLAYPKGVAVSADNILY 352
+ E G+ L P VAV +D +Y
Sbjct: 179 TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVY 238
Query: 353 FADGTNIRMVDRDGIVTTVIGNHMH 377
AD N R+V T + +H H
Sbjct: 239 VADRGNDRVV-----KLTSLEHHHH 258
Score = 29.8 bits (65), Expect = 0.59
Identities = 27/196 (13%), Positives = 56/196 (28%), Gaps = 9/196 (4%)
Query: 226 LAPVALATAPDGSLFV---GDFNLIRRIMTDGTVRTVVRLNVTRVAYRYHIAYSPLDGTL 282
L+P +A G+++V G + + ++ T T TV+ N + +A GT+
Sbjct: 14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFN--GLYQPQGLAVDG-AGTV 70
Query: 283 YISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKG 342
Y++D + + A + + E + + + G
Sbjct: 71 YVTDFNNRVV---TLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAG 127
Query: 343 VAVSADNILYFADGTNIRMVDRDGIVTTVIGNHMHKSHWKPIPCEGTLNIEEVSETMRDI 402
+ + VD G V ++ + + I
Sbjct: 128 SKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGI 187
Query: 403 RHTTGWACYGTGDNDH 418
Y T N +
Sbjct: 188 AVDEAGTVYVTEHNTN 203
Score = 27.9 bits (60), Expect = 2.7
Identities = 14/121 (11%), Positives = 33/121 (27%), Gaps = 12/121 (9%)
Query: 30 YKYRDCRDIMWDLQTTKLSGHDMSISEIGGWNLDIHHRYNFHEGILQKGDGSNIYLKNKP 89
D ++ T + L + + + N
Sbjct: 144 GVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTN 203
Query: 90 RIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDF--NLIRRIMTD 147
+++K G P L P+A+A D +++V D + + ++ +
Sbjct: 204 QVVKLLAGSTTST----------VLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSL 253
Query: 148 G 148
Sbjct: 254 E 254
>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue
{Nostoc punctiforme [TaxId: 272131]}
Length = 302
Score = 31.2 bits (69), Expect = 0.27
Identities = 25/197 (12%), Positives = 54/197 (27%), Gaps = 18/197 (9%)
Query: 273 IAYSPLDGTLYISDPESHQILRV---KNAMDFSAPDYNVEP-AVGSGERCLPGDEAHCGD 328
+A +P DGT+++++ E +I+ + N + + V A S +
Sbjct: 33 LASAP-DGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSI 91
Query: 329 GAPARDAKLAYPKGVAVSADNILYFADGTNIRMVDRDGIVTTVIGNHMHKSHWKPIPCEG 388
+ + + D I N D T + G
Sbjct: 92 PVVSLVKSDGTVETLLTLPDAIFL-----NGITPLSDTQYLTADSYRGAIWLIDVVQPSG 146
Query: 389 TLNIE----EVSETMRDIRHTTGWACYGTG----DNDHMTLIHCYGVMQDVVTSVFNNSH 440
++ +E S + G +G + + M L+ D
Sbjct: 147 SIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE 206
Query: 441 FLDVHFSHQDQDLFYFV 457
++ D + +
Sbjct: 207 QTNIDDFAFDVEGNLYG 223
Score = 29.6 bits (65), Expect = 0.72
Identities = 24/180 (13%), Positives = 45/180 (25%), Gaps = 9/180 (5%)
Query: 231 LATAPDGSLFVGDF--NLIRRIMTDGTVRTVVRLNVTRVAYRYHIAYSPLDGTLYISDPE 288
LA+APDG++FV + I I DG + + +A++ +G L +
Sbjct: 33 LASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVE----GKVSGLAFTS-NGDLVATGWN 87
Query: 289 SHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPARDAKLAYPKGVAVSAD 348
+ I V + + + A + A V
Sbjct: 88 ADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPL--SDTQYLTADSYRGAIWLIDVVQPS 145
Query: 349 NILYFADGTNIRMVDRDGIVTTVIGNHMHKSHWKPIPCEGTLNIEEVSETMRDIRHTTGW 408
++ R + + L V T +
Sbjct: 146 GSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV 205
Score = 28.9 bits (63), Expect = 1.2
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 125 LATAPDGSLFVGDF--NLIRRIMTDGTVRTVVRLKNQ 159
LA+APDG++FV + I I DG + ++ +
Sbjct: 33 LASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGK 69
>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens
[TaxId: 358]}
Length = 295
Score = 30.4 bits (67), Expect = 0.40
Identities = 15/183 (8%), Positives = 43/183 (23%), Gaps = 2/183 (1%)
Query: 274 AYSPLDGTLYISDPESHQILRVKNAMDFSAPDYNVEPAVGSGERCLPGDEAHCGDGAPAR 333
+ P GT + + ++ + + + P +GS + +
Sbjct: 24 TFDPASGTAWWFNILERELHELH--LASGRKTVHALPFMGSALAKISDSKQLIASDDGLF 81
Query: 334 DAKLAYPKGVAVSADNILYFADGTNIRMVDRDGIVTTVIGNHMHKSHWKPIPCEGTLNIE 393
A + + +N + G + ++ I +
Sbjct: 82 LRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVT 141
Query: 394 EVSETMRDIRHTTGWACYGTGDNDHMTLIHCYGVMQDVVTSVFNNSHFLDVHFSHQDQDL 453
++ + TG + V D T + + + + +
Sbjct: 142 KLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGM 201
Query: 454 FYF 456
Sbjct: 202 DGS 204
>d2ajfa1 d.92.1.5 (A:19-615) Angiotensin converting enzyme 2, ACE2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 597
Score = 29.8 bits (66), Expect = 0.85
Identities = 4/57 (7%), Positives = 14/57 (24%)
Query: 400 RDIRHTTGWACYGTGDNDHMTLIHCYGVMQDVVTSVFNNSHFLDVHFSHQDQDLFYF 456
+++ ++ C V D + + + ++ Q
Sbjct: 319 GNVQKAVCHPTAWDLGKGDFRILMCTKVTMDDFLTAHHEMGHIQYDMAYAAQPFLLR 375
>d1ueda_ a.104.1.1 (A:) p450 monoxygenase OxyC {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 403
Score = 29.3 bits (64), Expect = 1.1
Identities = 33/245 (13%), Positives = 63/245 (25%), Gaps = 13/245 (5%)
Query: 218 EAGPKQRLLAPVALATAPDGSLFVGDFNLIRRIMTDGTVRTVVRLNVTRVAYRYHIAYSP 277
GP R++ + D + ++RRI+ D + +
Sbjct: 32 AHGPLVRIVGESSTQLGRDFVWQAHGYEVVRRILGDH--EHFTTRPQFTQSKSGAHVEAQ 89
Query: 278 LDGTLYISDPESHQILRVKNAMDFSAPD-YNVEPAVGSGERCLPGDEAHCGDGAPARDAK 336
G + DP H LR +F+ +EPA+ S G P+ D +
Sbjct: 90 FVGQISTYDPPEHTRLRKMLTPEFTVRRIRRMEPAIQSLIDDRLDLLEAEG---PSADLQ 146
Query: 337 LAYPKGVAVSADNILYFADGTNIRMVDRDGIVTTVIGNHMHKSHWKPIPCEGTLNIEEVS 396
+ V A L + R R + + ++ +
Sbjct: 147 GLFADPVGAHALCELLGIPRDDQREFVRRIRRNADLSRGLKARAADSAAFNR--YLDNLL 204
Query: 397 ETMRDIRHTTGWACYGTGDNDHMTLIHCYGVMQDVVTSVFNN-----SHFLDVHFSHQDQ 451
R D++T G+ ++ + + Q
Sbjct: 205 ARQRADPDDGLLGMIVRDHGDNVTDEELKGLCTALILGGVETVAGMIGFGVLALLDNPGQ 264
Query: 452 DLFYF 456
F
Sbjct: 265 IELLF 269
>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}
Length = 263
Score = 27.9 bits (61), Expect = 2.4
Identities = 9/61 (14%), Positives = 16/61 (26%), Gaps = 3/61 (4%)
Query: 239 LFVGDFNLIRRIMTDGTVRTVVRLNVTRVAYRYH---IAYSPLDGTLYISDPESHQILRV 295
L I R+ + +A+ +D +Y +D I R
Sbjct: 4 LLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRA 63
Query: 296 K 296
Sbjct: 64 S 64
>d2h9fa2 d.21.1.4 (A:187-395) Hypothetical protein PA0793
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 209
Score = 27.2 bits (60), Expect = 3.6
Identities = 17/113 (15%), Positives = 30/113 (26%), Gaps = 8/113 (7%)
Query: 317 RCLPGDEAHCGDGAPARDAKLAYPKGVAVSADNILYFADGTNIRMVDRDGIVTTVIGNHM 376
R + PK V+ A G + D D +V + +
Sbjct: 67 RVAGALRMGLIKTPEEAATRQHTPKIAFVAPPRDYRTASGKLVAAGDIDLLVRALSMGKL 126
Query: 377 HKSHWKPIPCEGTLNIEEVSETMRDIRHTTGWACYGTGDNDHMTLIHCYGVMQ 429
H + + I + I T G G+ + H G ++
Sbjct: 127 HHAM----MGTAAVAIGTAAA----IPGTLVNLAAGGGERSAVRFGHPSGTLR 171
>d1f28a_ d.117.1.1 (A:) Thymidylate synthase {Pneumocystis carinii
[TaxId: 4754]}
Length = 295
Score = 26.9 bits (59), Expect = 6.1
Identities = 18/146 (12%), Positives = 33/146 (22%), Gaps = 19/146 (13%)
Query: 348 DNILYFADGTNIRMVDRDGIVTTVIGNHMHKSHWKPIPCEGTLNIEEVSETMRDIRHT-- 405
D + DR I++ + K P + S R
Sbjct: 135 DQLANIIQKIRTSPYDRRLILSAWNPADLEKMALPPCHMFCQFYVHIPSNNHRPELSCQL 194
Query: 406 --TGWACYGTGDND-------HMTLIHCYGVMQDVVTSVFNNSHFLDVHFSHQDQDLFYF 456
+ + H + V + H H Q L
Sbjct: 195 YQRSCDMGLGVPFNIASYALLTCMIAHVCDLDPGDFIHVMGDCHIYKDHIEALQQQLTRS 254
Query: 457 VKELPQKIRDDLDELKLSSNNSNIFN 482
+ P L L+ + ++I +
Sbjct: 255 PRPFPT--------LSLNRSITDIED 272
>d1oaha_ a.138.1.3 (A:) Cytochrome c nitrite reductase
{Desulfovibrio desulfuricans [TaxId: 876]}
Length = 482
Score = 26.6 bits (58), Expect = 8.0
Identities = 26/149 (17%), Positives = 48/149 (32%), Gaps = 9/149 (6%)
Query: 84 YLKNKPRIIKTTLGDGHQRPLDCKDCNGEAGPKQRLLAPVALATAPDGSLFVGDFNLIR- 142
Y+KN I T K+ N PK A L G F+ ++N R
Sbjct: 24 YMKNNEDRIMTDYKGSVPYH---KNDNVNPLPKGFKHAQPYLKNLWLGYPFMYEYNETRG 80
Query: 143 --RIMTDGTVRTVVRLKNQKFEKFPKILTSCFLSLSPSGI-LQKGDGSNIYLKNKPRIIK 199
+ D + R+ + + +C+ +P + G + +
Sbjct: 81 HTYAIDD--FLNIDRINRFAADGKGNLPATCWNCKTPKMMEWVSQYGDKFWSMDVNEFRA 138
Query: 200 TTLGDGHQRPLDCKDCNGEAGPKQRLLAP 228
+ H + C +C+ A + RL +
Sbjct: 139 KDKINAHDETIGCANCHDPATMELRLYSE 167
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.139 0.429
Gapped
Lambda K H
0.267 0.0415 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,884,045
Number of extensions: 90893
Number of successful extensions: 303
Number of sequences better than 10.0: 1
Number of HSP's gapped: 300
Number of HSP's successfully gapped: 28
Length of query: 482
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 393
Effective length of database: 1,185,626
Effective search space: 465951018
Effective search space used: 465951018
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)