Query psy8783
Match_columns 74
No_of_seqs 40 out of 42
Neff 3.5
Searched_HMMs 46136
Date Fri Aug 16 19:11:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8783.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8783hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4659|consensus 99.7 3.1E-18 6.7E-23 150.2 3.8 70 2-72 1727-1803(1899)
2 PF00735 Septin: Septin; Inte 53.8 14 0.0003 27.7 2.7 28 26-53 117-145 (281)
3 TIGR00466 kdsB 3-deoxy-D-manno 49.9 14 0.00031 26.3 2.2 27 32-58 197-223 (238)
4 PF04074 DUF386: Domain of unk 45.3 26 0.00057 23.6 2.8 21 13-33 68-89 (153)
5 COG1212 KdsB CMP-2-keto-3-deox 39.2 22 0.00047 27.5 1.8 28 31-58 194-221 (247)
6 TIGR00022 uncharacterized prot 35.3 36 0.00079 22.8 2.3 18 13-30 68-85 (142)
7 KOG1681|consensus 30.8 31 0.00067 27.3 1.5 29 22-50 153-181 (292)
8 PLN02599 dihydroorotase 24.8 48 0.001 25.9 1.6 28 23-51 231-259 (364)
9 COG2731 EbgC Beta-galactosidas 23.4 91 0.002 22.1 2.7 27 13-39 68-94 (154)
10 COG1550 Uncharacterized protei 22.9 49 0.0011 22.3 1.2 20 39-58 20-43 (95)
11 COG1888 Uncharacterized protei 22.7 1E+02 0.0022 21.0 2.6 27 44-70 28-58 (97)
12 PF09320 DUF1977: Domain of un 22.3 31 0.00068 22.2 0.1 28 23-51 28-55 (107)
13 PF04126 Cyclophil_like: Cyclo 20.7 67 0.0015 21.2 1.5 19 37-55 101-119 (120)
No 1
>KOG4659|consensus
Probab=99.72 E-value=3.1e-18 Score=150.23 Aligned_cols=70 Identities=29% Similarity=0.446 Sum_probs=60.9
Q ss_pred cceEEeeecCeeEe-eeeEEeeccceEEEEe-cCCccccccHHHHhhhCCcceeEEEeeec--CCe---eeEEecccc
Q psy8783 2 QDVVTSVFNNSHFL-DVHFSHQDQDLFYFVK-ELPQKIRDDLDELKRLGSMFNITTHETAT--DGK---ELRLQKAHS 72 (74)
Q Consensus 2 rdv~asV~N~a~~L-~lhfti~gqDtfYFVK-~~~~~~~~D~~~Lr~L~~gvNvt~sq~~~--~g~---dv~l~~~~~ 72 (74)
|+| +|++||++|| +|||+|||+|+||||| +++++..++.+++|+|++|||||+||++. +|+ ||+||+|.+
T Consensus 1727 r~V-as~Lfna~ylldlhfti~g~dthyfvk~e~dl~~~~~~~grr~le~g~nvsvsq~s~~~ngrtk~~veLq~g~l 1803 (1899)
T KOG4659|consen 1727 REV-ASKLFNAVYLLDLHFTIEGPDTHYFVKPEGDLVLLGLTGGRRRLESGVNVSVSQISHFTNGRTKDDVELQNGAL 1803 (1899)
T ss_pred HHH-HHHHhcceEeeeeEEEEecCceEEEEeccCceeecccccchhhhcCceEEEEeeehhhccccccceeEEecCcE
Confidence 556 5567777666 5999999999999999 89999999999999999999999999944 774 999999864
No 2
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=53.75 E-value=14 Score=27.67 Aligned_cols=28 Identities=25% Similarity=0.409 Sum_probs=21.5
Q ss_pred eEEEEecCCcc-ccccHHHHhhhCCccee
Q psy8783 26 LFYFVKELPQK-IRDDLDELKRLGSMFNI 53 (74)
Q Consensus 26 tfYFVK~~~~~-~~~D~~~Lr~L~~gvNv 53 (74)
+.||+.|..-+ -.-|.+.+|+|..-+||
T Consensus 117 cLYfI~pt~~~L~~~Di~~mk~Ls~~vNv 145 (281)
T PF00735_consen 117 CLYFIPPTGHGLKPLDIEFMKRLSKRVNV 145 (281)
T ss_dssp EEEEE-TTSSSS-HHHHHHHHHHTTTSEE
T ss_pred EEEEEcCCCccchHHHHHHHHHhcccccE
Confidence 68999985421 15799999999999998
No 3
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=49.93 E-value=14 Score=26.31 Aligned_cols=27 Identities=15% Similarity=0.011 Sum_probs=22.3
Q ss_pred cCCccccccHHHHhhhCCcceeEEEee
Q psy8783 32 ELPQKIRDDLDELKRLGSMFNITTHET 58 (74)
Q Consensus 32 ~~~~~~~~D~~~Lr~L~~gvNvt~sq~ 58 (74)
++++-..+.++|||.|++|.-|-+..+
T Consensus 197 ~~~le~~e~leqlr~le~g~~i~~~~~ 223 (238)
T TIGR00466 197 PCVLEEIEKLEQLRVLYYGEKIHVKIA 223 (238)
T ss_pred CCcccccchhHHHhhhhcCCceEEEEe
Confidence 677777799999999999998866554
No 4
>PF04074 DUF386: Domain of unknown function (DUF386); InterPro: IPR004375 This family consists of conserved hypothetical proteins, about 150 amino acids in length, with no known function. The family is restricted to the bacteria. It includes three members in Escherichia coli (strain K12) and three in Streptococcus pneumoniae.; PDB: 1S4C_B 1JOP_B.
Probab=45.32 E-value=26 Score=23.55 Aligned_cols=21 Identities=5% Similarity=0.309 Sum_probs=15.5
Q ss_pred eEeeeeEEeeccceEEE-EecC
Q psy8783 13 HFLDVHFSHQDQDLFYF-VKEL 33 (74)
Q Consensus 13 ~~L~lhfti~gqDtfYF-VK~~ 33 (74)
.|+|+|+.++|...+.| ....
T Consensus 68 kyiDiq~~l~G~E~i~~~~~~~ 89 (153)
T PF04074_consen 68 KYIDIQYVLEGEERIGWSADIE 89 (153)
T ss_dssp SEEEEEEEEES-EEEEEE-S--
T ss_pred cEEEEEeeccccEEEEEEcCcc
Confidence 68899999999999999 4433
No 5
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=39.23 E-value=22 Score=27.55 Aligned_cols=28 Identities=21% Similarity=0.222 Sum_probs=22.9
Q ss_pred ecCCccccccHHHHhhhCCcceeEEEee
Q psy8783 31 KELPQKIRDDLDELKRLGSMFNITTHET 58 (74)
Q Consensus 31 K~~~~~~~~D~~~Lr~L~~gvNvt~sq~ 58 (74)
||+++--.++++|||.|+.|.-|-+..+
T Consensus 194 ~ps~LE~~E~LEQLR~Le~G~kI~v~i~ 221 (247)
T COG1212 194 KPSPLEKIESLEQLRVLENGEKIHVEIV 221 (247)
T ss_pred CCchhHHHHHHHHHHHHHcCCeeEEEEe
Confidence 3777777799999999999998766544
No 6
>TIGR00022 uncharacterized protein, YhcH/YjgK/YiaL family. This family consists of conserved hypothetical proteins, about 150 amino acids in length. Members with limited information include YhcH, a possible sugar isomerase of sialic acid catabolism, and YjgK.
Probab=35.26 E-value=36 Score=22.81 Aligned_cols=18 Identities=11% Similarity=0.276 Sum_probs=16.6
Q ss_pred eEeeeeEEeeccceEEEE
Q psy8783 13 HFLDVHFSHQDQDLFYFV 30 (74)
Q Consensus 13 ~~L~lhfti~gqDtfYFV 30 (74)
.|+|+||.++|..++-+.
T Consensus 68 ~YiDIq~~l~G~E~i~~~ 85 (142)
T TIGR00022 68 RYLDIQLLLRGEENIEVG 85 (142)
T ss_pred heEEEEEeecceEEEEEe
Confidence 689999999999999985
No 7
>KOG1681|consensus
Probab=30.83 E-value=31 Score=27.25 Aligned_cols=29 Identities=34% Similarity=0.510 Sum_probs=24.6
Q ss_pred eccceEEEEecCCccccccHHHHhhhCCc
Q psy8783 22 QDQDLFYFVKELPQKIRDDLDELKRLGSM 50 (74)
Q Consensus 22 ~gqDtfYFVK~~~~~~~~D~~~Lr~L~~g 50 (74)
--||.||=|||=+....-|.+.|.||..-
T Consensus 153 csqDAffsvkEVDvglaADvGTL~Rlpkv 181 (292)
T KOG1681|consen 153 CSQDAFFSVKEVDVGLAADVGTLNRLPKV 181 (292)
T ss_pred ecccceeeeeeeeeehhhchhhHhhhhHH
Confidence 36999999999999999999999886543
No 8
>PLN02599 dihydroorotase
Probab=24.78 E-value=48 Score=25.86 Aligned_cols=28 Identities=11% Similarity=-0.097 Sum_probs=22.7
Q ss_pred ccceEEEEecCCccccccHHHHhh-hCCcc
Q psy8783 23 DQDLFYFVKELPQKIRDDLDELKR-LGSMF 51 (74)
Q Consensus 23 gqDtfYFVK~~~~~~~~D~~~Lr~-L~~gv 51 (74)
|.+++|+++| ++|..+|++.|.. |.+|.
T Consensus 231 ~~~~~~k~~P-PlR~~~dr~aL~~al~~G~ 259 (364)
T PLN02599 231 GLQPHNYCLP-VLKREIHREALVKAATSGS 259 (364)
T ss_pred CCCCCeEEEC-CCCCHHHHHHHHHHHHcCC
Confidence 4578999999 8888999999955 66655
No 9
>COG2731 EbgC Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]
Probab=23.44 E-value=91 Score=22.13 Aligned_cols=27 Identities=7% Similarity=0.337 Sum_probs=20.9
Q ss_pred eEeeeeEEeeccceEEEEecCCccccc
Q psy8783 13 HFLDVHFSHQDQDLFYFVKELPQKIRD 39 (74)
Q Consensus 13 ~~L~lhfti~gqDtfYFVK~~~~~~~~ 39 (74)
.|+|+|+.+.|+.-..|.=.......+
T Consensus 68 kYiDiqill~G~E~i~~s~~~~~~~~e 94 (154)
T COG2731 68 KYIDIQILLKGQEGIEYSPKETAQVKE 94 (154)
T ss_pred heEEEEEEEeceeeeEEccCcCCcccc
Confidence 799999999999999987654443333
No 10
>COG1550 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.89 E-value=49 Score=22.30 Aligned_cols=20 Identities=35% Similarity=0.556 Sum_probs=15.3
Q ss_pred ccHHHHh----hhCCcceeEEEee
Q psy8783 39 DDLDELK----RLGSMFNITTHET 58 (74)
Q Consensus 39 ~D~~~Lr----~L~~gvNvt~sq~ 58 (74)
+.+..|| +|.+.||||++++
T Consensus 20 eKRavlr~iv~rLk~KFnvSvaE~ 43 (95)
T COG1550 20 EKRAVLRPIVTRLKNKFNVSVAET 43 (95)
T ss_pred HHHHHHHHHHHHHHHhcceeeeec
Confidence 4454554 4999999999987
No 11
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.71 E-value=1e+02 Score=20.95 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=16.8
Q ss_pred HhhhCC--cceeEEEeeec--CCeeeEEecc
Q psy8783 44 LKRLGS--MFNITTHETAT--DGKELRLQKA 70 (74)
Q Consensus 44 Lr~L~~--gvNvt~sq~~~--~g~dv~l~~~ 70 (74)
|-.|+| |||+|+.++.. .|-.|.+.+.
T Consensus 28 lskl~gVegVNItv~eiD~et~~~~itIeG~ 58 (97)
T COG1888 28 LSKLEGVEGVNITVTEIDVETENLKITIEGT 58 (97)
T ss_pred HhhcCCcceEEEEEEEeeehhcceEEEEEcC
Confidence 344665 89999999832 4444444443
No 12
>PF09320 DUF1977: Domain of unknown function (DUF1977); InterPro: IPR015399 This C-terminal domain is functionally uncharacterised and predominantly found in Dnaj-like proteins.
Probab=22.25 E-value=31 Score=22.16 Aligned_cols=28 Identities=14% Similarity=0.218 Sum_probs=17.5
Q ss_pred ccceEEEEecCCccccccHHHHhhhCCcc
Q psy8783 23 DQDLFYFVKELPQKIRDDLDELKRLGSMF 51 (74)
Q Consensus 23 gqDtfYFVK~~~~~~~~D~~~Lr~L~~gv 51 (74)
.-.+-||||+.... .-....|++||..|
T Consensus 28 ~~~V~YYV~~~f~~-~y~~~~l~~lE~~V 55 (107)
T PF09320_consen 28 NLKVPYYVNPDFVQ-KYSSSKLRQLERQV 55 (107)
T ss_pred CCCcceeECchhhh-hcCHHHHHHHHHHH
Confidence 44688999995532 22345577777655
No 13
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=20.65 E-value=67 Score=21.24 Aligned_cols=19 Identities=26% Similarity=0.338 Sum_probs=11.6
Q ss_pred ccccHHHHhhhCCcceeEE
Q psy8783 37 IRDDLDELKRLGSMFNITT 55 (74)
Q Consensus 37 ~~~D~~~Lr~L~~gvNvt~ 55 (74)
+.+|.+.|+.+.+|..|++
T Consensus 101 i~~~~~~l~~~~~~~~V~i 119 (120)
T PF04126_consen 101 IVSDLENLKEVKGGEKVRI 119 (120)
T ss_dssp EEC-GGGGGG--TTEEEEE
T ss_pred ECCCHHHHhhCCCCCeEEe
Confidence 3467778888888887775
Done!