Query psy8783
Match_columns 74
No_of_seqs 40 out of 42
Neff 3.5
Searched_HMMs 29240
Date Fri Aug 16 19:11:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8783.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8783hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qbe_A Bacteriophage Q beta ca 50.9 8.6 0.0003 26.0 2.1 31 42-72 39-73 (132)
2 3w03_C DNA repair protein XRCC 35.7 15 0.00052 25.9 1.5 25 23-56 33-57 (184)
3 1s4c_A Protein HI0227; double- 34.3 32 0.0011 22.2 2.9 19 13-31 67-85 (155)
4 3tqd_A 3-deoxy-manno-octuloson 25.0 13 0.00044 25.9 -0.4 27 32-58 209-235 (256)
5 3fkh_A Putative pyridoxamine 5 24.5 1.3E+02 0.0045 19.0 4.5 24 6-30 27-51 (138)
6 1zx8_A Hypothetical protein TM 19.3 1E+02 0.0036 20.3 3.2 40 17-56 78-132 (136)
7 2q7a_A Cell surface heme-bindi 19.1 2.3E+02 0.0079 19.4 5.8 24 10-33 54-79 (152)
8 3ocp_A PRKG1 protein; serine/t 17.6 29 0.00098 20.2 0.1 16 24-39 64-79 (139)
9 2gjf_A Designed protein; proca 15.8 1.1E+02 0.0037 17.1 2.4 26 21-49 5-30 (78)
10 3bpd_A Uncharacterized protein 15.6 1.8E+02 0.0061 18.8 3.6 29 31-59 15-45 (100)
No 1
>1qbe_A Bacteriophage Q beta capsid; coat protein, RNA binding, icosahedral virus; 3.50A {Enterobacteria phage qbeta} SCOP: d.85.1.1
Probab=50.90 E-value=8.6 Score=26.01 Aligned_cols=31 Identities=10% Similarity=0.303 Sum_probs=20.5
Q ss_pred HHHhhhCCcceeEEEeeecCCe----eeEEecccc
Q psy8783 42 DELKRLGSMFNITTHETATDGK----ELRLQKAHS 72 (74)
Q Consensus 42 ~~Lr~L~~gvNvt~sq~~~~g~----dv~l~~~~~ 72 (74)
.+.-.||.-|-|+|+|++.|.+ .|+||++.+
T Consensus 39 gavpalekrvtvsv~qpsrnrknykvqvk~qnpta 73 (132)
T 1qbe_A 39 GAVPALEKRVTVSVSQPSRNRKNYKVQVKIQNPTA 73 (132)
T ss_dssp TCCGGGCCEEEEEEECC-----CEEEEEEEEEEEE
T ss_pred cCchhhhheEEEEecccccCccceeEEEEecCCcc
Confidence 3445699999999999987774 688888764
No 2
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=35.71 E-value=15 Score=25.87 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=19.4
Q ss_pred ccceEEEEecCCccccccHHHHhhhCCcceeEEE
Q psy8783 23 DQDLFYFVKELPQKIRDDLDELKRLGSMFNITTH 56 (74)
Q Consensus 23 gqDtfYFVK~~~~~~~~D~~~Lr~L~~gvNvt~s 56 (74)
-.++-||+|- +|. +.|++||.+++.
T Consensus 33 ~p~~~yflk~-~W~--------~~l~sgF~L~LT 57 (184)
T 3w03_C 33 EPSITHFLQV-SWE--------KTLESGFVITLT 57 (184)
T ss_dssp CTTSCEEEEE-EES--------SCGGGEEEEEEE
T ss_pred CCCceEEEEE-Eec--------cCCCCceEEEEE
Confidence 4679999997 562 246899999988
No 3
>1s4c_A Protein HI0227; double-stranded beta-helix, structural genomics, unknown function, structural genomics, unknown function; 2.20A {Haemophilus influenzae} SCOP: b.82.2.7 PDB: 1jop_A
Probab=34.25 E-value=32 Score=22.24 Aligned_cols=19 Identities=16% Similarity=0.188 Sum_probs=16.8
Q ss_pred eEeeeeEEeeccceEEEEe
Q psy8783 13 HFLDVHFSHQDQDLFYFVK 31 (74)
Q Consensus 13 ~~L~lhfti~gqDtfYFVK 31 (74)
.|+|+|+.++|+.++-|.=
T Consensus 67 ~YiDIq~~l~G~E~i~~~~ 85 (155)
T 1s4c_A 67 EYLDVQVLIRGTENIEVGA 85 (155)
T ss_dssp SEEEEEEEEESCEEEEECC
T ss_pred ceEEEEecceeeEEEEEEe
Confidence 6899999999999988763
No 4
>3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0
Probab=25.01 E-value=13 Score=25.89 Aligned_cols=27 Identities=19% Similarity=0.121 Sum_probs=20.0
Q ss_pred cCCccccccHHHHhhhCCcceeEEEee
Q psy8783 32 ELPQKIRDDLDELKRLGSMFNITTHET 58 (74)
Q Consensus 32 ~~~~~~~~D~~~Lr~L~~gvNvt~sq~ 58 (74)
++.+-..+.+++||.|+.|..|-+..+
T Consensus 209 ~s~lE~~e~leqlr~le~G~~i~~~~~ 235 (256)
T 3tqd_A 209 ACPAEKMEALEQLRILWHGGRIHMVVA 235 (256)
T ss_dssp CCHHHHHHTCTTHHHHHTTCCCEEEEC
T ss_pred CCcccchhhhHHHHHHHCCCeEEEEEe
Confidence 344433467889999999999988765
No 5
>3fkh_A Putative pyridoxamine 5'-phosphate oxidase; NP_601736.1, STR genomics, joint center for structural genomics, JCSG; HET: P33; 2.51A {Corynebacterium glutamicum atcc 13032}
Probab=24.45 E-value=1.3e+02 Score=19.02 Aligned_cols=24 Identities=13% Similarity=0.120 Sum_probs=16.3
Q ss_pred EeeecCeeE-eeeeEEeeccceEEEE
Q psy8783 6 TSVFNNSHF-LDVHFSHQDQDLFYFV 30 (74)
Q Consensus 6 asV~N~a~~-L~lhfti~gqDtfYFV 30 (74)
+-+-++.-| .|+.|..+| +++||-
T Consensus 27 a~~~dg~P~vvPv~f~~~~-~~iyfh 51 (138)
T 3fkh_A 27 VVRRSDEMDIFPVNFIVDK-GAIYIR 51 (138)
T ss_dssp EEEETTEEEEEEEEEEEET-TEEEEE
T ss_pred EEeeCCEEEEEEEEEEEEC-CEEEEE
Confidence 333455544 479999997 678884
No 6
>1zx8_A Hypothetical protein TM1367; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: 1PE; 1.90A {Thermotoga maritima} SCOP: b.62.1.3 PDB: 2ka0_A
Probab=19.30 E-value=1e+02 Score=20.26 Aligned_cols=40 Identities=20% Similarity=0.306 Sum_probs=25.5
Q ss_pred eeEEeeccceEEEEecC---------------CccccccHHHHhhhCCcceeEEE
Q psy8783 17 VHFSHQDQDLFYFVKEL---------------PQKIRDDLDELKRLGSMFNITTH 56 (74)
Q Consensus 17 lhfti~gqDtfYFVK~~---------------~~~~~~D~~~Lr~L~~gvNvt~s 56 (74)
+-|..-|.+.-.|-++. --++.+|++.|+.+.+++.|++.
T Consensus 78 IaYw~pgg~LaIFyg~~p~s~~e~~~a~~v~~lGrI~~~l~~l~~v~~~~~V~IE 132 (136)
T 1zx8_A 78 VGYWPPGKALCLFFGKTPMSDDKIQPASAVNVIGKIVEGLEDLKKIKDGEKVAVR 132 (136)
T ss_dssp EEEEGGGTEEEEESSCCTTCSSSBCCSSCEEEEEEEEECGGGGGGCCTTCEEEEE
T ss_pred EEEeCCCCEEEEEeCCCccccCccccCcCcEEEEEEccCHHHHhhCCCCceEEEE
Confidence 44555555555565654 12456778888888888877765
No 7
>2q7a_A Cell surface heme-binding protein; beta sandwich; HET: HEM; 2.10A {Streptococcus pyogenes}
Probab=19.09 E-value=2.3e+02 Score=19.40 Aligned_cols=24 Identities=8% Similarity=0.169 Sum_probs=18.0
Q ss_pred cCeeEeeeeEEee--ccceEEEEecC
Q psy8783 10 NNSHFLDVHFSHQ--DQDLFYFVKEL 33 (74)
Q Consensus 10 N~a~~L~lhfti~--gqDtfYFVK~~ 33 (74)
|+-+||-+.|.+- =+|.-++|+..
T Consensus 54 ~Gk~YLTvr~~L~d~i~d~~f~Vq~~ 79 (152)
T 2q7a_A 54 AGKIVLTFRMSLADYSGNYQFWIQPG 79 (152)
T ss_dssp TSCEEEEEEESCGGGEEEEEEEEEET
T ss_pred CCcEEEEEEEEhhhhcCccEEEEecC
Confidence 5678887777665 38888999973
No 8
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=17.60 E-value=29 Score=20.20 Aligned_cols=16 Identities=13% Similarity=0.316 Sum_probs=10.9
Q ss_pred cceEEEEecCCccccc
Q psy8783 24 QDLFYFVKELPQKIRD 39 (74)
Q Consensus 24 qDtfYFVK~~~~~~~~ 39 (74)
.+.+|||..|..++..
T Consensus 64 ~~~~y~i~~G~v~~~~ 79 (139)
T 3ocp_A 64 GSLVYVMEDGKVEVTK 79 (139)
T ss_dssp CCEEEEEEECCEEEEE
T ss_pred CCEEEEEEeCEEEEEE
Confidence 4667888887766533
No 9
>2gjf_A Designed protein; procarboxypeptidase, de novo protein; NMR {}
Probab=15.75 E-value=1.1e+02 Score=17.15 Aligned_cols=26 Identities=12% Similarity=0.289 Sum_probs=19.2
Q ss_pred eeccceEEEEecCCccccccHHHHhhhCC
Q psy8783 21 HQDQDLFYFVKELPQKIRDDLDELKRLGS 49 (74)
Q Consensus 21 i~gqDtfYFVK~~~~~~~~D~~~Lr~L~~ 49 (74)
-||.-|.|=|++.+ ++..+.|+.|+.
T Consensus 5 ~~~~~~~~rV~~~~---~~q~~~L~~L~~ 30 (78)
T 2gjf_A 5 HHGSKTIFVIVPTN---EEQVAFLEALAK 30 (78)
T ss_dssp --CCCEEEEECCCS---HHHHHHHHHHHT
T ss_pred cCCCeeEEEEEcCC---HHHHHHHHHHHh
Confidence 46899999999866 566777888855
No 10
>3bpd_A Uncharacterized protein; heptamer, Mg+2 ION, PSI-2, NYSGXRC, structural genom protein structure initiative; 2.80A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.61.1
Probab=15.58 E-value=1.8e+02 Score=18.81 Aligned_cols=29 Identities=24% Similarity=0.035 Sum_probs=17.8
Q ss_pred ecCCccccccHHHHhhhCC--cceeEEEeee
Q psy8783 31 KELPQKIRDDLDELKRLGS--MFNITTHETA 59 (74)
Q Consensus 31 K~~~~~~~~D~~~Lr~L~~--gvNvt~sq~~ 59 (74)
||....+-+=-..|-.++| |||+|+.++.
T Consensus 15 KPh~P~ivdlA~~l~~~~gV~gVnItV~EvD 45 (100)
T 3bpd_A 15 KPHEPKTIVFALKLSELENVDGVNIHLSEID 45 (100)
T ss_dssp EESCSCHHHHHHHHHTSTTEEEEEEEEEEEC
T ss_pred CCCCCCHHHHHHHHHhCCCcceEEEEEEEee
Confidence 6644333333344555554 8999999983
Done!