Query psy8783
Match_columns 74
No_of_seqs 40 out of 42
Neff 3.5
Searched_HMMs 13730
Date Fri Aug 16 19:11:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8783.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/8783hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qbea_ d.85.1.1 (A:) Qbeta co 48.6 4.6 0.00034 25.7 2.1 31 42-72 39-73 (132)
2 d1s4ca1 b.82.2.7 (A:1-143) Hyp 27.7 23 0.0016 21.5 2.9 18 13-30 67-84 (143)
3 d1zx8a1 b.62.1.3 (A:1-124) Hyp 26.5 28 0.002 21.1 3.1 21 36-56 100-120 (124)
4 d2hq9a1 b.45.1.1 (A:1-148) Hyp 26.4 48 0.0035 18.9 4.1 25 5-30 23-48 (148)
5 d1tg7a5 c.1.8.14 (A:41-394) Be 22.1 13 0.00096 24.8 0.9 48 1-53 2-52 (354)
6 d1nkta1 a.162.1.1 (A:226-349) 21.4 6.5 0.00047 24.0 -0.8 29 23-51 77-109 (124)
7 d2zcwa2 b.82.3.2 (A:6-117) Tra 21.2 60 0.0044 17.4 3.7 12 25-36 21-32 (112)
8 d1ne6a1 b.82.3.2 (A:109-244) R 20.5 10 0.00075 21.8 0.1 25 24-48 61-85 (136)
9 d3bpda1 d.58.61.1 (A:1-91) Unc 19.8 60 0.0043 19.2 3.6 30 30-59 12-43 (91)
10 d1t3qa2 d.15.4.2 (A:7-87) Quin 18.5 61 0.0044 18.1 3.3 23 12-34 1-23 (81)
No 1
>d1qbea_ d.85.1.1 (A:) Qbeta coat protein {Bacteriophage Qbeta [TaxId: 39803]}
Probab=48.63 E-value=4.6 Score=25.73 Aligned_cols=31 Identities=10% Similarity=0.303 Sum_probs=20.5
Q ss_pred HHHhhhCCcceeEEEeeecCCe----eeEEecccc
Q psy8783 42 DELKRLGSMFNITTHETATDGK----ELRLQKAHS 72 (74)
Q Consensus 42 ~~Lr~L~~gvNvt~sq~~~~g~----dv~l~~~~~ 72 (74)
.+.-.||.-|-|+|+|++.|.+ .|+||++.+
T Consensus 39 gavpalekrvtvsv~qpsrnrknykvqvk~qnpta 73 (132)
T d1qbea_ 39 GAVPALEKRVTVSVSQPSRNRKNYKVQVKIQNPTA 73 (132)
T ss_dssp TCCGGGCCEEEEEEECC-----CEEEEEEEEEEEE
T ss_pred cCchhhhheEEEEecccccCccceeEEEEecCCcc
Confidence 3445699999999999987774 688887754
No 2
>d1s4ca1 b.82.2.7 (A:1-143) Hypothetical protein HI0227 {Haemophilus influenzae [TaxId: 727]}
Probab=27.73 E-value=23 Score=21.54 Aligned_cols=18 Identities=17% Similarity=0.206 Sum_probs=15.7
Q ss_pred eEeeeeEEeeccceEEEE
Q psy8783 13 HFLDVHFSHQDQDLFYFV 30 (74)
Q Consensus 13 ~~L~lhfti~gqDtfYFV 30 (74)
.|+|+|+.++|...+-+-
T Consensus 67 ~YiDIq~vl~G~E~i~~~ 84 (143)
T d1s4ca1 67 EYLDVQVLIRGTENIEVG 84 (143)
T ss_dssp SEEEEEEEEESCEEEEEC
T ss_pred ceEEEEEEeeCceEEEEe
Confidence 689999999999998664
No 3
>d1zx8a1 b.62.1.3 (A:1-124) Hypothetical protein TM1367 {Thermotoga maritima [TaxId: 2336]}
Probab=26.45 E-value=28 Score=21.11 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=15.3
Q ss_pred cccccHHHHhhhCCcceeEEE
Q psy8783 36 KIRDDLDELKRLGSMFNITTH 56 (74)
Q Consensus 36 ~~~~D~~~Lr~L~~gvNvt~s 56 (74)
++.+|++.|+.+.+|.+|++.
T Consensus 100 ki~~~~~~l~~i~~g~~V~Ie 120 (124)
T d1zx8a1 100 KIVEGLEDLKKIKDGEKVAVR 120 (124)
T ss_dssp EEEECGGGGGGCCTTCEEEEE
T ss_pred EecCCHHHHhcCCCCCEEEEE
Confidence 345677788888888888765
No 4
>d2hq9a1 b.45.1.1 (A:1-148) Hypothetical protein Mll6688 {Mesorhizobium loti [TaxId: 381]}
Probab=26.41 E-value=48 Score=18.87 Aligned_cols=25 Identities=8% Similarity=0.283 Sum_probs=18.5
Q ss_pred EEeeecCeeEe-eeeEEeeccceEEEE
Q psy8783 5 VTSVFNNSHFL-DVHFSHQDQDLFYFV 30 (74)
Q Consensus 5 ~asV~N~a~~L-~lhfti~gqDtfYFV 30 (74)
++.+-++.-|. |+.|..+| |++||-
T Consensus 23 Lat~~~g~P~v~Pv~f~~~~-~~iy~~ 48 (148)
T d2hq9a1 23 LACAKDGQPYVVPLYYAYSD-AHLYAF 48 (148)
T ss_dssp EEEEETTEEEEEEEECEEET-TEEEEE
T ss_pred EEEEeCCcEEEEEEEEEEEC-CEEEEE
Confidence 35556776555 79999987 688886
No 5
>d1tg7a5 c.1.8.14 (A:41-394) Beta-galactosidase LacA, N-terminal domain {Penicillium sp. [TaxId: 5081]}
Probab=22.07 E-value=13 Score=24.77 Aligned_cols=48 Identities=21% Similarity=0.179 Sum_probs=30.4
Q ss_pred CcceEEeeecCeeEee-eeEEeeccceEEEEec--CCccccccHHHHhhhCCccee
Q psy8783 1 MQDVVTSVFNNSHFLD-VHFSHQDQDLFYFVKE--LPQKIRDDLDELKRLGSMFNI 53 (74)
Q Consensus 1 ~rdv~asV~N~a~~L~-lhfti~gqDtfYFVK~--~~~~~~~D~~~Lr~L~~gvNv 53 (74)
++|.|+ -=+++++|+ =.|.+-|-..|||=.+ +.| +++++.+|.+ |+|+
T Consensus 2 ~~~~v~-~d~~~~~~~G~~~~~~~~~~h~~r~~~~~~w--~~~l~~mk~~--G~n~ 52 (354)
T d1tg7a5 2 LQKYVT-WDEHSIFVNGERLMIFSGEVHPYRLPVASLY--IDIFEKVKAL--GFNC 52 (354)
T ss_dssp CCSSEE-ECSSCEEETTEEECEEEEECCGGGSCCGGGH--HHHHHHHHTT--TCCE
T ss_pred CcceEE-EeCCEEEECCEEEEEEEEecCCCCCCCHHHH--HHHHHHHHHc--CCCE
Confidence 355544 455667776 7777777788888433 334 4667677754 7775
No 6
>d1nkta1 a.162.1.1 (A:226-349) Pre-protein crosslinking domain of SecA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=21.40 E-value=6.5 Score=23.98 Aligned_cols=29 Identities=21% Similarity=0.274 Sum_probs=18.5
Q ss_pred ccceEEEEecCCccccccHHHH----hhhCCcc
Q psy8783 23 DQDLFYFVKELPQKIRDDLDEL----KRLGSMF 51 (74)
Q Consensus 23 gqDtfYFVK~~~~~~~~D~~~L----r~L~~gv 51 (74)
-+|.+|.||++-..+-+...+. ||++.|+
T Consensus 77 ~~d~dYiV~d~~v~ivDe~TGR~~~grr~s~GL 109 (124)
T d1nkta1 77 SRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGM 109 (124)
T ss_dssp CBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTH
T ss_pred hcCceEEEecCeEEEEeccCCCcccCCCcChHH
Confidence 4899999998776555444322 5555554
No 7
>d2zcwa2 b.82.3.2 (A:6-117) Transcriptional regulator TTHA1359, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=21.23 E-value=60 Score=17.44 Aligned_cols=12 Identities=33% Similarity=0.119 Sum_probs=8.6
Q ss_pred ceEEEEecCCcc
Q psy8783 25 DLFYFVKELPQK 36 (74)
Q Consensus 25 DtfYFVK~~~~~ 36 (74)
|.+|||+.+..+
T Consensus 21 ~~~y~i~~G~v~ 32 (112)
T d2zcwa2 21 DRAYRVLEGLVR 32 (112)
T ss_dssp CCCEEEEESCEE
T ss_pred CEEEEEEEccce
Confidence 578888877754
No 8
>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]}
Probab=20.52 E-value=10 Score=21.81 Aligned_cols=25 Identities=16% Similarity=0.250 Sum_probs=15.8
Q ss_pred cceEEEEecCCccccccHHHHhhhC
Q psy8783 24 QDLFYFVKELPQKIRDDLDELKRLG 48 (74)
Q Consensus 24 qDtfYFVK~~~~~~~~D~~~Lr~L~ 48 (74)
.+.+|||..|...+..+-+.++.|.
T Consensus 61 ~~~~yiI~~G~v~v~~~~~~~~~l~ 85 (136)
T d1ne6a1 61 GDNFYVIDQGEMDVYVNNEWATSVG 85 (136)
T ss_dssp CCEEEEEEESCEEEEETTEEEEEEC
T ss_pred cceeeeecCCceeeeccccccceec
Confidence 4679999988876554443333333
No 9
>d3bpda1 d.58.61.1 (A:1-91) Uncharacterized protein AF1549 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=19.77 E-value=60 Score=19.17 Aligned_cols=30 Identities=23% Similarity=0.053 Sum_probs=18.7
Q ss_pred EecCCccccccHHHHhhhCC--cceeEEEeee
Q psy8783 30 VKELPQKIRDDLDELKRLGS--MFNITTHETA 59 (74)
Q Consensus 30 VK~~~~~~~~D~~~Lr~L~~--gvNvt~sq~~ 59 (74)
.||....+-+--..|-.|+| |+|+|+.++.
T Consensus 12 lKPh~p~~~~~A~~l~~~~gV~~VnitV~EiD 43 (91)
T d3bpda1 12 LKPHEPKTIVFALKLSELENVDGVNIHLSEID 43 (91)
T ss_dssp EEESCSCHHHHHHHHHTSTTEEEEEEEEEEEC
T ss_pred ecCCCCCHHHHHHHHhccCCcceEEEEEEEec
Confidence 45544333344445555665 8999999983
No 10
>d1t3qa2 d.15.4.2 (A:7-87) Quinoline 2-oxidoreductase small subunit QorS, N-domain {Pseudomonas putida [TaxId: 303]}
Probab=18.55 E-value=61 Score=18.12 Aligned_cols=23 Identities=9% Similarity=0.248 Sum_probs=18.0
Q ss_pred eeEeeeeEEeeccceEEEEecCC
Q psy8783 12 SHFLDVHFSHQDQDLFYFVKELP 34 (74)
Q Consensus 12 a~~L~lhfti~gqDtfYFVK~~~ 34 (74)
|.++.++|++.|+..-.-+.|+.
T Consensus 1 s~~~~i~~~vNG~~~~~~~~~~~ 23 (81)
T d1t3qa2 1 SQLMRISATINGKPRVFYVEPRM 23 (81)
T ss_dssp CCCEEEEEEETTEEEEEEECTTS
T ss_pred CCeEEEEEEECCEEEEEecCCCC
Confidence 35678999999998887776654
Done!