RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8783
(74 letters)
>gnl|CDD|181337 PRK08266, PRK08266, hypothetical protein; Provisional.
Length = 542
Score = 28.1 bits (63), Expect = 0.37
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 3/26 (11%)
Query: 3 DVVTSVFNNSHFLDVHFSHQDQDLFY 28
VVT VFNN+ + +V +DQ +
Sbjct: 448 GVVTVVFNNNAYGNV---RRDQKRRF 470
>gnl|CDD|223297 COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation,
ribosomal structure and biogenesis].
Length = 155
Score = 26.8 bits (60), Expect = 0.81
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
Query: 7 SVFNNSHFLDVHFSHQDQDLFYFVKE---LPQKIRDDLDELK 45
+ + + DV F Q D F E LP++I D +
Sbjct: 81 TTKGTTTYTDVSF--QKGDYLLFGPESRGLPEEILDAAPDRC 120
>gnl|CDD|221072 pfam11309, DUF3112, Protein of unknown function (DUF3112). This
eukaryotic family of proteins has no known function.
Length = 160
Score = 26.0 bits (58), Expect = 1.5
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 4 VVTSVFNNSHFLDVHFSHQDQDL 26
++TS + L H Q +D+
Sbjct: 28 IITSAVPYLYTLSEHTYRQCRDV 50
>gnl|CDD|179027 PRK00441, argR, arginine repressor; Provisional.
Length = 149
Score = 25.8 bits (57), Expect = 2.1
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 42 DELKRLGSMFNITTHETATDGKELRLQKAHSE 73
+ELK++G F++T + D KEL+L K S
Sbjct: 26 EELKKMG--FDVTQATVSRDIKELKLIKVLSN 55
>gnl|CDD|197563 smart00187, INB, Integrin beta subunits (N-terminal portion of
extracellular region). Portion of beta integrins that
lies N-terminal to their EGF-like repeats. Integrins are
cell adhesion molecules that mediate cell-extracellular
matrix and cell-cell interactions. They contain both
alpha and beta subunits. Beta integrins are proposed to
have a von Willebrand factor type-A "insert" or "I"
-like domain (although this remains to be confirmed).
Length = 423
Score = 25.7 bits (57), Expect = 2.3
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 6/36 (16%)
Query: 25 DLFYFVKELPQKIRDDLDELKRLGS-----MFNITT 55
DL+Y + +L ++DDLD LK LG M +T+
Sbjct: 101 DLYYLM-DLSYSMKDDLDNLKSLGDDLAREMKGLTS 135
>gnl|CDD|215878 pfam00362, Integrin_beta, Integrin, beta chain. Integrins have
been found in animals and their homologues have also
been found in cyanobacteria, probably due to horizontal
gene transfer. The sequences repeats have been trimmed
due to an overlap with EGF.
Length = 424
Score = 25.6 bits (57), Expect = 2.6
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 6/36 (16%)
Query: 25 DLFYFVKELPQKIRDDLDELKRLGS-----MFNITT 55
DL+Y + +L ++DDL+ LK LG+ M NIT+
Sbjct: 102 DLYYLM-DLSYSMKDDLENLKTLGTDLAKEMANITS 136
>gnl|CDD|234165 TIGR03303, OM_YaeT, outer membrane protein assembly complex, YaeT
protein. Members of this protein family are the YaeT
protein of the YaeT/YfiO complex for assembling
proteins into the outer membrane of Gram-negative
bacteria. This protein is similar in sequence and
function to a non-essential paralog, YtfM, that is also
in the Omp85 family. Members of this family typically
have five tandem copies of the surface antigen variable
number repeat (pfam07244), followed by an outer
membrane beta-barrel domain (pfam01103), while the YtfM
family typically has a single pfam07244 repeat [Protein
fate, Protein and peptide secretion and trafficking].
Length = 741
Score = 24.8 bits (55), Expect = 5.4
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 2 QDVVTSVFNNSHFLDVHFSHQDQDLFYFVKELP 34
+ + +++ +F DV + L VKE P
Sbjct: 37 DEAIKALYATGYFEDVKIEREGGVLVIKVKERP 69
>gnl|CDD|218236 pfam04735, Baculo_helicase, Baculovirus DNA helicase.
Length = 1173
Score = 24.5 bits (54), Expect = 5.8
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 8 VFNNSHFLDVHFS--HQDQDLFYFVKELPQKIRDDLDELK 45
VFN +FL+V S ++D+ LF + + DDL E+
Sbjct: 172 VFNPKYFLNVECSLTNEDRKLFVNGRSVFTDSDDDLFEVT 211
>gnl|CDD|178269 PLN02664, PLN02664, enoyl-CoA
hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase.
Length = 275
Score = 24.5 bits (53), Expect = 6.0
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 9/48 (18%)
Query: 3 DVVTSVFNNSHFLDVHFSHQDQDLFYFVKELPQKIRDDLDELKRLGSM 50
D+VT+ D+ + +D F+ VKE+ I DL L+RL S+
Sbjct: 128 DIVTAC-------DIRYCSEDA--FFSVKEVDLAITADLGTLQRLPSI 166
>gnl|CDD|219991 pfam08728, CRT10, CRT10. CRT10 is a transcriptional regulator of
ribonucleotide reductase (RNR) genes. RNR catalyzes the
rate limiting step in dNTP synthesis. Mutations in CRT10
have been shown to enhance hydroxyurea resistance.
Length = 562
Score = 24.3 bits (53), Expect = 7.0
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 8 VFNNSHFLDVHFSHQDQDLFYFVKELP 34
+NS + + + H+D + FY K
Sbjct: 196 ASDNSQGITLFYYHKDDERFYIEKSHQ 222
>gnl|CDD|221900 pfam13024, DUF3884, Protein of unknown function (DUF3884). This
family of proteins is functionally uncharacterized.
However several proteins are annotated as Tagatose
1,6-diphosphate aldolase, but evidence to support this
could not be found. This family of proteins is found in
bacteria. Proteins in this family are typically between
61 and 106 amino acids in length. There are two
completely conserved residues (Y and F) that may be
functionally important.
Length = 77
Score = 23.6 bits (51), Expect = 7.1
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 31 KELPQKIRDDLDELKRLGSMFNITTHE 57
++ PQ D +ELK LG + T E
Sbjct: 11 EKCPQIPLFDSNELKELGKWYVSTGKE 37
>gnl|CDD|234538 TIGR04315, octaheme_Shew, octaheme c-type cytochrome, tetrathionate
reductase family. Members of this protein family bind
heme covalently and contain eight (at least) CXXCH
heme-binding motifs. A characterized member is the
respiratory enzyme octaheme tetrathionate reductase from
Shewanella.
Length = 440
Score = 23.8 bits (52), Expect = 9.1
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 3 DVVTSVFNNSHFLDVHFSHQDQDL 26
D+ +S+ LDVH +
Sbjct: 165 DLDSSLIKPDRSLDVHMGSDGANF 188
>gnl|CDD|183411 PRK12293, hisZ, ATP phosphoribosyltransferase regulatory subunit;
Provisional.
Length = 281
Score = 23.8 bits (52), Expect = 9.9
Identities = 8/29 (27%), Positives = 18/29 (62%)
Query: 21 HQDQDLFYFVKELPQKIRDDLDELKRLGS 49
+DL ++ +P +I+++L++LK L
Sbjct: 190 KTLEDLDEVIELVPDEIKEELEKLKELAE 218
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.134 0.379
Gapped
Lambda K H
0.267 0.0734 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,729,185
Number of extensions: 293388
Number of successful extensions: 380
Number of sequences better than 10.0: 1
Number of HSP's gapped: 380
Number of HSP's successfully gapped: 23
Length of query: 74
Length of database: 10,937,602
Length adjustment: 44
Effective length of query: 30
Effective length of database: 8,986,026
Effective search space: 269580780
Effective search space used: 269580780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.2 bits)