RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8783
         (74 letters)



>d2fa8a1 c.47.1.23 (A:4-89) Hypothetical protein Atu0228
          {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 86

 Score = 24.6 bits (54), Expect = 0.79
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 30 VKELPQKIRDDLDELKRLG 48
           KEL Q+IRD +D  + LG
Sbjct: 68 PKELKQRIRDLIDPERDLG 86


>d2azea1 e.63.1.1 (A:199-346) Transcription factor DP-1 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 148

 Score = 23.6 bits (51), Expect = 2.7
 Identities = 9/36 (25%), Positives = 18/36 (50%)

Query: 22  QDQDLFYFVKELPQKIRDDLDELKRLGSMFNITTHE 57
            D+  + F  +   +I DD++ LKR+G    + +  
Sbjct: 80  NDKFEYLFNFDNTFEIHDDIEVLKRMGMACGLESGS 115


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.134    0.379 

Gapped
Lambda     K      H
   0.267   0.0642    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 268,479
Number of extensions: 10470
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 5
Length of query: 74
Length of database: 2,407,596
Length adjustment: 41
Effective length of query: 33
Effective length of database: 1,844,666
Effective search space: 60873978
Effective search space used: 60873978
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.1 bits)