RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8786
(484 letters)
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33;
1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A*
3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Length = 276
Score = 184 bits (470), Expect = 4e-55
Identities = 74/237 (31%), Positives = 104/237 (43%), Gaps = 49/237 (20%)
Query: 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLK------------ 232
VA+VTG NKG+G IV+ LC F G + LTARD +G AVQ L+
Sbjct: 3 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLD 62
Query: 233 --DRAS------------------------------TVPFAIQAEKTILTNYLGLVRTCV 260
D S PF IQAE T+ TN+ G C
Sbjct: 63 IDDLQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCT 122
Query: 261 FLFPLLRRHARVVNLSSSAGHLSQITNLELKK---RLRQLREPVSLRSLNITKEHPRA-- 315
L PL++ RVVN+SS + + + R + E + +N E +
Sbjct: 123 ELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRSETITEEELVGLMNKFVEDTKKGV 182
Query: 316 HVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG 372
H +GWP SAY V+KIGV +L+RI+ +K + ++NA PG+V T+M+
Sbjct: 183 HQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAGPKA 239
Score = 68.2 bits (167), Expect = 5e-13
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 408 TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITN-LELKKRLM 466
PF IQAE T+ TN+ G C L PL++ RVVN+SS + + EL+++
Sbjct: 99 PTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFR 158
Query: 467 EDCVSERQLTDMMYEFME 484
+ ++E +L +M +F+E
Sbjct: 159 SETITEEELVGLMNKFVE 176
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases,
oxidoreductase; HET: NDP; 1.91A {Papaver somniferum}
Length = 311
Score = 107 bits (268), Expect = 3e-26
Identities = 43/183 (23%), Positives = 68/183 (37%), Gaps = 15/183 (8%)
Query: 199 GFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRASTVPFAIQAEKTILTNYLGLVRT 258
G ++F I D ++ + + + + AE+ + NY G+
Sbjct: 100 GVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSV 159
Query: 259 CVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRA- 315
L PLL+ R+VN+SSS G L ++N + L R + +
Sbjct: 160 TEVLIPLLQLSDSPRIVNVSSSTGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDF 219
Query: 316 ----HVAKGWPD--SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSS 369
GWP +AY SK +N TR+ K +N V PG V T M+
Sbjct: 220 KENLIETNGWPSFGAAYTTSKACLNAYTRVLANKIP------KFQVNCVCPGLVKTEMNY 273
Query: 370 FMG 372
+G
Sbjct: 274 GIG 276
Score = 71.9 bits (176), Expect = 5e-14
Identities = 45/235 (19%), Positives = 83/235 (35%), Gaps = 10/235 (4%)
Query: 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRASTVPF 240
+ R AVVTG NKG+GF I K L + LT RD KG EAV+ LK+
Sbjct: 7 NTVTKRRCAVVTGGNKGIGFEICKQLSSN-GIMVVLTCRDVTKGHEAVEKLKNSNHENVV 65
Query: 241 AIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREP 300
Q + +T+ + + + ++ L ++AG + + K +
Sbjct: 66 FHQLD---VTDPIATMSSLADFI--KTHFGKLDILVNNAGVAGFSVDADRFKAMISDIGE 120
Query: 301 VSLRSLNITKEHPRAHVAKGWPDSA---YAVSKIGVNLLTRIYQKKFDCELGNQDKVINA 357
S + I ++ + + A ++ GV +T + + V +
Sbjct: 121 DSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIPLL-QLSDSPRIVNVS 179
Query: 358 VHPGYVATNMSSFMGNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTVPFA 412
G + + + D+ T + V++ L + N + A
Sbjct: 180 SSTGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETNGWPSFGA 234
Score = 56.9 bits (137), Expect = 4e-09
Identities = 26/126 (20%), Positives = 50/126 (39%), Gaps = 4/126 (3%)
Query: 362 YVATNMSSFMGNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTVPFAIQAEKTILT 421
+ N + G D + S L+ + + + AE+ +
Sbjct: 93 DILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETYE-LAEECLKI 151
Query: 422 NYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRLM-EDCVSERQLTDM 478
NY G+ L PLL+ R+VN+SSS G L ++N + L D ++E ++ +
Sbjct: 152 NYNGVKSVTEVLIPLLQLSDSPRIVNVSSSTGSLKYVSNETALEILGDGDALTEERIDMV 211
Query: 479 MYEFME 484
+ ++
Sbjct: 212 VNMLLK 217
>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent
oxidoreductase (SDR family), structural genomics, PSI;
2.60A {Caenorhabditis elegans} SCOP: c.2.1.2
Length = 250
Score = 86.2 bits (214), Expect = 3e-19
Identities = 47/246 (19%), Positives = 78/246 (31%), Gaps = 91/246 (36%)
Query: 185 SERVAVVTGANKGLGFGIVKSLCEQ-FDGYIYLTARDKKKGAEAVQVLKDRASTVPF--- 240
S VVTGAN+G+G G+V+ L + +I TARD +K E + R +P
Sbjct: 2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVT 61
Query: 241 ---AIQA--------------------------------------EKTILTNYLGLVRTC 259
++ + + N +V
Sbjct: 62 CDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLT 121
Query: 260 VFLFPLLRR-------------HARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSL 306
L PLL+ A V+ +SS G S+ +
Sbjct: 122 QKLLPLLKNAASKESGDQLSVSRAAVITISSGLG---------------------SI-TD 159
Query: 307 NITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATN 366
N + +P AY +SK +N+ R +L + + ++ PG+V TN
Sbjct: 160 NTSGSAQ-------FPVLAYRMSKAAINMFGRTLAV----DLKDDNVLVVNFCPGWVQTN 208
Query: 367 MSSFMG 372
+
Sbjct: 209 LGGKNA 214
Score = 30.4 bits (69), Expect = 0.96
Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 13/49 (26%)
Query: 416 EKTILTNYLGLVRTCVFLFPLLRR-------------HARVVNLSSSAG 451
+ + N +V L PLL+ A V+ +SS G
Sbjct: 107 AEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLG 155
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain
dehydrogenase, SDR, xenobiotic, metyrapone,
oligomerisation; 1.68A {Comamonas testosteroni} SCOP:
c.2.1.2 PDB: 1fk8_A*
Length = 257
Score = 71.2 bits (175), Expect = 4e-14
Identities = 35/206 (16%), Positives = 59/206 (28%), Gaps = 40/206 (19%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPFAIQA- 244
+ V++G G+G K L G+ I + + + R + +
Sbjct: 2 SIIVISGCATGIGAATRKVLEAA--GHQIVGIDIRDAEVIADLSTAEGRKQAIADVLAKC 59
Query: 245 --------------------EKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHL 282
+ NY G P L++ V +SS A
Sbjct: 60 SKGMDGLVLCAGLGPQTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAH 119
Query: 283 SQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQK 342
L L E + + H + + AYA SK + + R
Sbjct: 120 LAFDKNPLALALEAGEEAKARAIV--------EHAGEQGGNLAYAGSKNALTVAVR---- 167
Query: 343 KFDCELGNQDKV-INAVHPGYVATNM 367
K G + V +N + PG T +
Sbjct: 168 KRAAAWG-EAGVRLNTIAPGATETPL 192
Score = 31.5 bits (72), Expect = 0.51
Identities = 9/41 (21%), Positives = 13/41 (31%), Gaps = 2/41 (4%)
Query: 415 AEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHL 453
+ NY G P L++ V +SS A
Sbjct: 79 LGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAH 119
>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold,
dinucleotide binding oxidoreductase; HET: NAP; 1.75A
{Drosophila melanogaster} SCOP: c.2.1.2
Length = 267
Score = 69.3 bits (170), Expect = 2e-13
Identities = 41/250 (16%), Positives = 74/250 (29%), Gaps = 98/250 (39%)
Query: 184 PSERVAVVTGANKGLGFGIVKSLCEQ-FDGY-IYLTARDKKKGAEAVQVLKDRAS----- 236
++TG N+GLG G+VK+L ++ T R++++ E + K+ ++
Sbjct: 19 SHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILE 78
Query: 237 ---TVPFAIQA--------------------------------------EKTILTNYLGL 255
A T+ TN +
Sbjct: 79 IDLRNFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVP 138
Query: 256 VRTCVFLFPLLRR-------------HARVVNLSSSAGHLSQITNLELKKRLRQLREPVS 302
+ PLL++ A ++N+SS G +
Sbjct: 139 IMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGSIQ------------------- 179
Query: 303 LRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGY 362
+ G AY SK +N T+ +L Q + ++HPG+
Sbjct: 180 ------------GNTDGGMY--AYRTSKSALNAATKSLSV----DLYPQRIMCVSLHPGW 221
Query: 363 VATNMSSFMG 372
V T+M
Sbjct: 222 VKTDMGGSSA 231
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology,
NEW structural genomics research consortium, nysgrc;
HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Length = 255
Score = 68.3 bits (168), Expect = 4e-13
Identities = 40/229 (17%), Positives = 60/229 (26%), Gaps = 86/229 (37%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKDRASTVPF----- 240
+ A+V G G+G V+ L E G + LT R++ A + R +
Sbjct: 9 KKAIVIGGTHGMGLATVRRLVEG--GAEVLLTGRNESNIARIREEFGPRVHALRSDIADL 66
Query: 241 --------AIQAE----------------------------KTILTNYLGLVRTCVFLFP 264
A + N G T L P
Sbjct: 67 NEIAVLGAAAGQTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTP 126
Query: 265 LLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPD- 323
L+R +V SS A G P
Sbjct: 127 LIREGGSIVFTSSVADE-------------------------------------GGHPGM 149
Query: 324 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG 372
S Y+ SK + + EL + +N+V PG++ T G
Sbjct: 150 SVYSASKAALVSFASVLAA----ELLPRGIRVNSVSPGFIDTPTKGVAG 194
Score = 34.0 bits (79), Expect = 0.079
Identities = 11/37 (29%), Positives = 15/37 (40%)
Query: 416 EKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGH 452
++ N G T L PL+R +V SS A
Sbjct: 107 DRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVADE 143
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann
fold; HET: NAI; 1.80A {Pseudomonas SP}
Length = 255
Score = 66.5 bits (163), Expect = 1e-12
Identities = 35/204 (17%), Positives = 58/204 (28%), Gaps = 40/204 (19%)
Query: 188 VAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPFAIQAE- 245
V +TG+ G+G + + L G+ + R + + R + V +
Sbjct: 3 VIAITGSASGIGAALKELLARA--GHTVIGIDRGQADIEADLSTPGGRETAVAAVLDRCG 60
Query: 246 --------------------KTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLS 283
+ NY G+ L L R V + S A
Sbjct: 61 GVLDGLVCCAGVGVTAANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAATQP 120
Query: 284 QITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKK 343
L + ++ +G AYA SK V L R +
Sbjct: 121 G------AAELPMVEAMLAGDEARAI----ELAEQQGQTHLAYAGSKYAVTCLAR----R 166
Query: 344 FDCELGNQDKVINAVHPGYVATNM 367
+ + +N V PG V T +
Sbjct: 167 NVVDWAGRGVRLNVVAPGAVETPL 190
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium, three layer; 1.76A {Rhizobium etli}
Length = 273
Score = 66.4 bits (163), Expect = 2e-12
Identities = 45/248 (18%), Positives = 68/248 (27%), Gaps = 88/248 (35%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKDRASTV------- 238
++AV+TGA G+G K + G +++T R K A+ + A +
Sbjct: 30 KIAVITGATSGIGLAAAKRFVAE--GARVFITGRRKDVLDAAIAEIGGGAVGIQADSANL 87
Query: 239 ------------------------------PFAIQAE----KTILTNYLGLVRTCVFLFP 264
P E T N G++ T P
Sbjct: 88 AELDRLYEKVKAEAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALP 147
Query: 265 LLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPD- 323
LL R + VV S+AG G P
Sbjct: 148 LLARGSSVVLTGSTAGS-------------------------------------TGTPAF 170
Query: 324 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKV-INAVHPGYVATNMSSFMGNVNIFDDSST 382
S YA SK + R + +L + IN + PG T + +
Sbjct: 171 SVYAASKAALRSFARNWIL----DLK-DRGIRINTLSPGPTETTGLVELAGKDPVQQQGL 225
Query: 383 FNAFERVI 390
NA +
Sbjct: 226 LNALAAQV 233
Score = 32.1 bits (74), Expect = 0.28
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 416 EKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHL 453
+ T N G++ T PLL R + VV S+AG
Sbjct: 128 DDTFDRNVKGVLFTVQKALPLLARGSSVVLTGSTAGST 165
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural
genomics CEN infectious disease, oxidoreductase; HET:
EPE; 1.50A {Mycobacterium paratuberculosis}
Length = 291
Score = 65.7 bits (161), Expect = 4e-12
Identities = 58/236 (24%), Positives = 79/236 (33%), Gaps = 83/236 (35%)
Query: 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRASTVP--- 239
++R V+TGAN GLG + L + + + RD +KG A + + +
Sbjct: 13 SFAQRTVVITGANSGLGAVTARELARR-GATVIMAVRDTRKGEAAARTMAGQVEVRELDL 71
Query: 240 --------FA--------------IQA----------EKTILTNYLG---LVRTCVFLFP 264
FA I A E I TN+LG L L P
Sbjct: 72 QDLSSVRRFADGVSGADVLINNAGIMAVPYALTVDGFESQIGTNHLGHFALTNL---LLP 128
Query: 265 LLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGW-PD 323
L RVV +SS A +I +L LN + + P
Sbjct: 129 RLT--DRVVTVSSMAHWPGRI----------------NLEDLNWRS--------RRYSPW 162
Query: 324 SAYAVSKIGVNLLTRIYQKKFDCEL-----GNQDKVI-NAVHPGYVATNMSSFMGN 373
AY+ SK+ NLL F EL + A HPGY TN+ G
Sbjct: 163 LAYSQSKLA-NLL-------FTSELQRRLTAAGSPLRALAAHPGYSHTNLQGASGR 210
Score = 32.6 bits (75), Expect = 0.21
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 8/44 (18%)
Query: 416 EKTILTNYLG---LVRTCVFLFPLLRRHARVVNLSSSAGHLSQI 456
E I TN+LG L L P L RVV +SS A +I
Sbjct: 109 ESQIGTNHLGHFALTNL---LLPRLT--DRVVTVSSMAHWPGRI 147
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to pseudotropine;
HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2
PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Length = 260
Score = 64.8 bits (159), Expect = 6e-12
Identities = 42/254 (16%), Positives = 75/254 (29%), Gaps = 97/254 (38%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKD---RASTVPF-- 240
A+VTG ++G+G+GIV+ L G +Y +R++K+ + + + +
Sbjct: 10 CTALVTGGSRGIGYGIVEELASL--GASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDL 67
Query: 241 ----AIQA--EKT---------ILTNYLGLVR--------------------TCVFLF-- 263
Q IL N G+V +
Sbjct: 68 SSRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSV 127
Query: 264 ---PLL--RRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVA 318
P L VV +SS +G L+
Sbjct: 128 LAHPFLKASERGNVVFISSVSGALAVPYE------------------------------- 156
Query: 319 KGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKV-INAVHPGYVATNMSSFMGNVNIF 377
+ Y +K ++ LT + E +D + +N V PG +AT++
Sbjct: 157 -----AVYGATKGAMDQLT----RCLAFEWA-KDNIRVNGVGPGVIATSLVE-----MTI 201
Query: 378 DDSSTFNAFERVIS 391
D ++I
Sbjct: 202 QDPEQKENLNKLID 215
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to tropine,
short-chain dehydrogenase; HET: NAP; 2.40A {Datura
stramonium} SCOP: c.2.1.2
Length = 273
Score = 64.9 bits (159), Expect = 7e-12
Identities = 44/231 (19%), Positives = 76/231 (32%), Gaps = 92/231 (39%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKD---RASTVPF-- 240
A+VTG +KG+G+ IV+ L G +Y +R++K+ E +++ ++
Sbjct: 22 TTALVTGGSKGIGYAIVEELAGL--GARVYTCSRNEKELDECLEIWREKGLNVEGSVCDL 79
Query: 241 ----AIQA--EKT---------ILTNYLGLVR--------------------TCVFLF-- 263
+ IL N G+V +
Sbjct: 80 LSRTERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQ 139
Query: 264 ---PLL--RRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVA 318
PLL ++ V+ LSS AG + +
Sbjct: 140 IAYPLLKASQNGNVIFLSSIAGFSALPSV------------------------------- 168
Query: 319 KGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKV-INAVHPGYVATNMS 368
S Y+ SK +N +T K CE +D + +N+V PG + T +
Sbjct: 169 -----SLYSASKGAINQMT----KSLACEWA-KDNIRVNSVAPGVILTPLV 209
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural
genomics, PSI-2, protein structure initiative; 2.30A
{Aeromonas hydrophila subsp}
Length = 235
Score = 61.8 bits (151), Expect = 4e-11
Identities = 29/227 (12%), Positives = 59/227 (25%), Gaps = 87/227 (38%)
Query: 185 SERVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPF--- 240
S +VTGA GLG + L E+ G+ + + R ++ + +L + +
Sbjct: 2 SLGHIIVTGAGSGLGRALTIGLVER--GHQVSMMGRRYQRLQQQELLLGNAVIGIVADLA 59
Query: 241 ---AIQA-----------------------------------EKTILTNYLGLVRTCVFL 262
+ + + +N + +
Sbjct: 60 HHEDVDVAFAAAVEWGGLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQT 119
Query: 263 FPLLR-RHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGW 321
L+ R + N+ SSA G
Sbjct: 120 VRLIGERGGVLANVLSSAAQ-------------------------------------VGK 142
Query: 322 PD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
+ S Y SK G+ + EL + + ++P + +
Sbjct: 143 ANESLYCASKWGMRGFLESLRA----ELKDSPLRLVNLYPSGIRSEF 185
Score = 33.7 bits (78), Expect = 0.096
Identities = 7/38 (18%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 416 EKTILTNYLGLVRTCVFLFPLLR-RHARVVNLSSSAGH 452
+ + +N + + L+ R + N+ SSA
Sbjct: 102 RRVMESNLVSTILVAQQTVRLIGERGGVLANVLSSAAQ 139
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE
beta, structural genomics, PSI-2; 1.90A {Pseudomonas
syringae PV}
Length = 247
Score = 61.0 bits (149), Expect = 1e-10
Identities = 45/233 (19%), Positives = 61/233 (26%), Gaps = 94/233 (40%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKDRASTVP--FAIQ 243
RV +VTGA +G+G ++ G + L R + AE +K P A+
Sbjct: 15 RVILVTGAARGIGAAAARAYAAH--GASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALN 72
Query: 244 AEKTILTNYLGLVRTC-----------------------------------------VFL 262
E Y L F+
Sbjct: 73 LENATAQQYRELAARVEHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFM 132
Query: 263 -----FPLLR--RHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRA 315
PLL+ A + SSS G RA
Sbjct: 133 LTRALLPLLKRSEDASIAFTSSSVGR------------------------------KGRA 162
Query: 316 HVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKV-INAVHPGYVATNM 367
W AY VSK L + EL V N+++PG T M
Sbjct: 163 ----NW--GAYGVSKFATEGLMQTLAD----ELEGVTAVRANSINPGATRTGM 205
Score = 29.8 bits (68), Expect = 1.7
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 416 EKTILTNYLGLVRTCVFLFPLLR--RHARVVNLSSSAGH 452
+ + N L PLL+ A + SSS G
Sbjct: 120 MQVMHVNVNATFMLTRALLPLLKRSEDASIAFTSSSVGR 158
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein
structure initiative, midwest center for structural
genomics, MCSG; 2.06A {Listeria innocua}
Length = 202
Score = 59.2 bits (144), Expect = 2e-10
Identities = 25/247 (10%), Positives = 55/247 (22%), Gaps = 79/247 (31%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQV-LKDRAST-------- 237
++ GA+ LG + + L + + R + V V + + S
Sbjct: 4 MKILLIGASGTLGSAVKERLEK--KAEVITAGRH----SGDVTVDITNIDSIKKMYEQVG 57
Query: 238 --------------VPFAI----QAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSA 279
P + TI + G + + L +
Sbjct: 58 KVDAIVSATGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDKGSFTLTTGIM 117
Query: 280 GHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPD-SAYAVSKIGVNLLTR 338
++ A++ V +
Sbjct: 118 ME-------------------------------------DPIVQGASAAMANGAVTAFAK 140
Query: 339 IYQKKFDCELGNQDKVINAVHPGYVATNMSSFMGNVNIFD---DSSTFNAFERVISHFLI 395
E+ ++ N V P + + F + AFE+ +
Sbjct: 141 SAAI----EMPRGIRI-NTVSPNVLEESWDKLEPFFEGFLPVPAAKVARAFEKSVFGAQT 195
Query: 396 GQQINTF 402
G+ +
Sbjct: 196 GESYQVY 202
Score = 32.2 bits (74), Expect = 0.23
Identities = 4/39 (10%), Positives = 9/39 (23%)
Query: 414 QAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGH 452
+ TI + G + + L +
Sbjct: 81 KNAVTISSKLGGQINLVLLGIDSLNDKGSFTLTTGIMME 119
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein]
reductase; RHLG-NADP complex, oxidoreductase; HET: NAP;
2.30A {Pseudomonas aeruginosa}
Length = 276
Score = 60.3 bits (147), Expect = 2e-10
Identities = 47/235 (20%), Positives = 74/235 (31%), Gaps = 91/235 (38%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKD--RASTVPF--- 240
R+A+VTG ++G+G I + L E G +++ ARD + A+ L +P
Sbjct: 30 RIALVTGGSRGIGQMIAQGLLEA--GARVFICARDAEACADTATRLSAYGDCQAIPADLS 87
Query: 241 ---AIQA-----------------------------------EKTILTNYLGLVRTCVFL 262
+ EK + N + L
Sbjct: 88 SEAGARRLAQALGELSARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQL 147
Query: 263 FPLLRRHA------RVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAH 316
PLLRR A RV+N+ S AG
Sbjct: 148 LPLLRRSASAENPARVINIGSVAG-----------------------------------I 172
Query: 317 VAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM 371
A G AY SK ++ L+R+ EL + +N + PG + M+ +
Sbjct: 173 SAMGEQAYAYGPSKAALHQLSRM----LAKELVGEHINVNVIAPGRFPSRMTRHI 223
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA,
nation project on protein structural and functional
analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB:
1x1e_A* 2ekq_A
Length = 239
Score = 58.6 bits (143), Expect = 6e-10
Identities = 33/220 (15%), Positives = 67/220 (30%), Gaps = 78/220 (35%)
Query: 186 ERVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLK-----DRASTVP 239
ER A+VTG ++G+G I ++L + GY + + +R+ ++ A+++ + ++
Sbjct: 2 ERKALVTGGSRGIGRAIAEALVAR--GYRVAIASRNPEEAAQSLGAVPLPTDLEKDDPKG 59
Query: 240 FAIQAEKT-----ILTNYLGLVR--------------------TCVFLF------PLL-R 267
+A + +L + + FL +
Sbjct: 60 LVKRALEALGGLHVLVHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEA 119
Query: 268 RHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYA 327
RV+ + S + + AY
Sbjct: 120 GWGRVLFIGSVTTFTA----------------------------GGPVPIP------AYT 145
Query: 328 VSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
+K + LT + E +N + PGYV T
Sbjct: 146 TAKTALLGLT----RALAKEWARLGIRVNLLCPGYVETEF 181
>1xq1_A Putative tropinone reducatse; structural genomics, protein
structure initiative, CESG, AT1 reductively methylated
protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB:
2q45_A
Length = 266
Score = 58.7 bits (143), Expect = 7e-10
Identities = 42/230 (18%), Positives = 69/230 (30%), Gaps = 90/230 (39%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKD---RASTVPF-- 240
+ +VTG KG+G IV+ G I+ AR++ + E + + + +
Sbjct: 15 KTVLVTGGTKGIGHAIVEEFAGF--GAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDA 72
Query: 241 --AIQAEKT-------------ILTNYLGLVR--------------------TCVFLF-- 263
+ EK IL N LG +R +
Sbjct: 73 SLRPEREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQ 132
Query: 264 ---PLL--RRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVA 318
PLL ++ +SS AG +S
Sbjct: 133 LAHPLLKASGCGNIIFMSSIAGVVSASVG------------------------------- 161
Query: 319 KGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMS 368
S Y+ +K +N L + CE + NAV P +AT ++
Sbjct: 162 -----SIYSATKGALNQLA----RNLACEWASDGIRANAVAPAVIATPLA 202
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A
{Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A
3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Length = 252
Score = 57.5 bits (140), Expect = 1e-09
Identities = 37/232 (15%), Positives = 59/232 (25%), Gaps = 94/232 (40%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKDRASTVPFAIQA- 244
R+ +VTGA+ G+G + G + L R+++K + + + P
Sbjct: 13 RIILVTGASDGIGREAAMTYARY--GATVILLGRNEEKLRQVASHINEETGRQPQWFILD 70
Query: 245 -----------------------------------------------EKTILTNYLGLVR 257
+ + N
Sbjct: 71 LLTCTSENCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFM 130
Query: 258 TCVFLFPLLR--RHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRA 315
L PLL +V SSS G RA
Sbjct: 131 LTQALLPLLLKSDAGSLVFTSSSVGR------------------------------QGRA 160
Query: 316 HVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
W AYA SK + ++ E + +V N ++PG T M
Sbjct: 161 ----NW--GAYAASKFATEGMMQVLAD----EYQQRLRV-NCINPGGTRTAM 201
Score = 28.6 bits (65), Expect = 3.5
Identities = 10/39 (25%), Positives = 13/39 (33%), Gaps = 2/39 (5%)
Query: 416 EKTILTNYLGLVRTCVFLFPLLR--RHARVVNLSSSAGH 452
+ + N L PLL +V SSS G
Sbjct: 118 QDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGR 156
>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein,
unknown function, structural genomics, MCSG, protein
structure initiative; 2.00A {Saccharomyces cerevisiae}
Length = 254
Score = 57.3 bits (139), Expect = 2e-09
Identities = 41/229 (17%), Positives = 66/229 (28%), Gaps = 94/229 (41%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY---IYLTARDKKKGAEAVQVLKDRASTVP---- 239
+V +VTG ++G+G IV L +Y AR + + + DR V
Sbjct: 3 KVILVTGVSRGIGKSIVDVLFSL--DKDTVVYGVARSEAPLKKLKEKYGDRFFYVVGDIT 60
Query: 240 ----------FAIQA----------------------------EKTILTNYLGLVRTCVF 261
A++ +K N+ +V
Sbjct: 61 EDSVLKQLVNAAVKGHGKIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGI 120
Query: 262 LFPLLR-RHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKG 320
P L+ + VV +SS A ++
Sbjct: 121 ALPELKKTNGNVVFVSSDACNMYF----------------------------------SS 146
Query: 321 WPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVI--NAVHPGYVATNM 367
W AY SK +N L N+++ + AV PG V T+M
Sbjct: 147 W--GAYGSSKAALNHFAMT--------LANEERQVKAIAVAPGIVDTDM 185
Score = 29.9 bits (68), Expect = 1.5
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 416 EKTILTNYLGLVRTCVFLFPLLR-RHARVVNLSSSAGH 452
+K N+ +V P L+ + VV +SS A +
Sbjct: 104 KKLYDINFFSIVSLVGIALPELKKTNGNVVFVSSDACN 141
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 56.5 bits (137), Expect = 3e-09
Identities = 23/219 (10%), Positives = 44/219 (20%), Gaps = 82/219 (37%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLK--DRASTVPFAIQ 243
+ +V G + LG +VK + + + A+ +K + I+
Sbjct: 23 KNILVLGGSGALGAEVVKFFKSK--SWNTISIDFRENPNADHSFTIKDSGEEE-IKSVIE 79
Query: 244 A--------------------------------EKTILTNYLGLVRTCVFLFPLLRRHAR 271
+ I N + LL +
Sbjct: 80 KINSKSIKVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGL 139
Query: 272 VVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPD-SAYAVSK 330
V +SA AY +K
Sbjct: 140 FVLTGASAAL-------------------------------------NRTSGMIAYGATK 162
Query: 331 IGVNLLTRIYQKKFDCELGNQDKVI--NAVHPGYVATNM 367
+ + + E G + P + T
Sbjct: 163 AATHHIIKD----LASENGGLPAGSTSLGILPVTLDTPT 197
Score = 30.7 bits (70), Expect = 0.75
Identities = 11/87 (12%), Positives = 22/87 (25%), Gaps = 11/87 (12%)
Query: 374 VNIFDDSSTFNAFERVISHF-----LI---GQQINTFIPAIYTVPFAIQAEKTILTNYLG 425
+ + + E++ S + G + A + I N
Sbjct: 66 IKDSGEEEIKSVIEKINSKSIKVDTFVCAAG--GWSGGNASSDEFLK-SVKGMIDMNLYS 122
Query: 426 LVRTCVFLFPLLRRHARVVNLSSSAGH 452
+ LL + V +SA
Sbjct: 123 AFASAHIGAKLLNQGGLFVLTGASAAL 149
>3d3w_A L-xylulose reductase; uronate cycle, short-chain
dehydrogenase/reductase(SDR) superfamily, glucose
metabolism, acetylation, carbohydrate metabolism; HET:
NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Length = 244
Score = 55.9 bits (136), Expect = 4e-09
Identities = 46/200 (23%), Positives = 74/200 (37%), Gaps = 40/200 (20%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKDRASTVPFAI--- 242
R +VTGA KG+G G V++L G + +R + V+ V +
Sbjct: 8 RRVLVTGAGKGIGRGTVQALHAT--GARVVAVSRTQADLDSLVRECP-GIEPVCVDLGDW 64
Query: 243 -QAEKT--------ILTNYLGLVRTCVFLFPLLRRHA----RV--VNLSSSAGHLSQITN 287
E+ +L N + P L R VNL + +SQI
Sbjct: 65 EATERALGSVGPVDLLVNNAAVALLQ----PFLEVTKEAFDRSFEVNL-RAVIQVSQIVA 119
Query: 288 LELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCE 347
L R +N++ + + A S Y +K +++LT++ E
Sbjct: 120 RGLIARGV------PGAIVNVSSQC--SQRA-VTNHSVYCSTKGALDMLTKV----MALE 166
Query: 348 LGNQDKVINAVHPGYVATNM 367
LG +NAV+P V T+M
Sbjct: 167 LGPHKIRVNAVNPTVVMTSM 186
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural
genomics, putative 3-oxoacyl-(acyl carrier protei
reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus
anthracis str}
Length = 255
Score = 56.0 bits (136), Expect = 5e-09
Identities = 48/257 (18%), Positives = 86/257 (33%), Gaps = 97/257 (37%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGYI----YLTARD---------KKKGAEAVQV--- 230
+VA+VTGA++G+G I K L DG + Y ++ + G A +
Sbjct: 8 KVALVTGASRGIGRAIAKRLAN--DGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGAN 65
Query: 231 LKDRASTVPFAIQAEKT-----------IL-------------------------TNYLG 254
L+ + IL N
Sbjct: 66 LESLHGVEALYSSLDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKA 125
Query: 255 LVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPR 314
LR ++R++N+SS+A +
Sbjct: 126 PFFIIQQALSRLRDNSRIINISSAATRI-------------------------------- 153
Query: 315 AHVAKGWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMGN 373
PD AY+++K +N +T K +LG + +NA+ PG+V T+M++ + +
Sbjct: 154 -----SLPDFIAYSMTKGAINTMTFTLAK----QLGARGITVNAILPGFVKTDMNAELLS 204
Query: 374 VNIFDDS-STFNAFERV 389
+ +T +AF R+
Sbjct: 205 DPMMKQYATTISAFNRL 221
Score = 29.0 bits (66), Expect = 3.0
Identities = 9/39 (23%), Positives = 19/39 (48%)
Query: 416 EKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLS 454
++ + N LR ++R++N+SS+A +S
Sbjct: 116 DRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRIS 154
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold,
tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB:
2wdz_A* 3lqf_A*
Length = 254
Score = 56.0 bits (136), Expect = 5e-09
Identities = 47/225 (20%), Positives = 67/225 (29%), Gaps = 84/225 (37%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKDR-ASTVPF---- 240
A VTGA G+G I ++ G + L R+ A Q L A+ +
Sbjct: 12 ACAAVTGAGSGIGLEICRAFAAS--GARLILIDREAAALDRAAQELGAAVAARIVADVTD 69
Query: 241 ------AIQAEKT-----ILTNYLGLVR--------------------TCVFLFP----- 264
A + IL N G+ R +F
Sbjct: 70 AEAMTAAAAEAEAVAPVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGR 129
Query: 265 --LLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWP 322
+ R +VNL S +G + V +
Sbjct: 130 AMVARGAGAIVNLGSMSGTI----------------------------------VNRPQF 155
Query: 323 DSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
S+Y SK V+ LTR E + +NA+ PGYVAT M
Sbjct: 156 ASSYMASKGAVHQLTRA----LAAEWAGRGVRVNALAPGYVATEM 196
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET:
NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Length = 244
Score = 55.2 bits (134), Expect = 9e-09
Identities = 42/245 (17%), Positives = 66/245 (26%), Gaps = 89/245 (36%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKDRASTVPFAI--- 242
A+VTGA KG+G VK+L G + R + V +
Sbjct: 8 LRALVTGAGKGIGRDTVKALHAS--GAKVVAVTRTNSDLVSLAKECP-GIEPVCVDLGDW 64
Query: 243 -QAEKT--------ILTNYLGLVR--------------------TCVFLF------PLLR 267
EK +L N LV VF ++
Sbjct: 65 DATEKALGGIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMIN 124
Query: 268 R--HARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSA 325
R +VN+SS H++
Sbjct: 125 RGVPGSIVNVSSMVAHVTFPNL------------------------------------IT 148
Query: 326 YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMGNVNIFDDSSTFNA 385
Y+ +K + +LT+ ELG +N+V+P V T+M + D
Sbjct: 149 YSSTKGAMTMLTKA----MAMELGPHKIRVNSVNPTVVLTDM-----GKKVSADPEFARK 199
Query: 386 FERVI 390
+
Sbjct: 200 LKERH 204
>4e4y_A Short chain dehydrogenase family protein; structural genomics, the
center for structural genomics of I diseases, csgid,
niaid; 1.80A {Francisella tularensis subsp}
Length = 244
Score = 54.5 bits (132), Expect = 1e-08
Identities = 32/216 (14%), Positives = 59/216 (27%), Gaps = 78/216 (36%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY--IYLTARDKKKGAEAVQVLK----DRAS---- 236
+VTG +KG+G +V+ L + + + AE ++ +K +
Sbjct: 5 ANYLVTGGSKGIGKAVVELLLQN--KNHTVINIDIQQSFSAENLKFIKADLTKQQDITNV 62
Query: 237 --TVPF----------AIQAEKTIL------------TNYLGLVRTCVFLFPLLRRHARV 272
+ I + +I N + L L+ A +
Sbjct: 63 LDIIKNVSFDGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASI 122
Query: 273 VNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPD-SAYAVSKI 331
V S P+ AY +SK
Sbjct: 123 VFNGSDQCF-------------------------------------IAKPNSFAYTLSKG 145
Query: 332 GVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
+ +T+ +L +N V PG V T++
Sbjct: 146 AIAQMTKSLAL----DLAKYQIRVNTVCPGTVDTDL 177
>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics,
unknown function, oxidoreductase, PSI- 2; 2.40A
{Corynebacterium glutamicum}
Length = 245
Score = 54.5 bits (132), Expect = 1e-08
Identities = 39/227 (17%), Positives = 60/227 (26%), Gaps = 91/227 (40%)
Query: 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKK--------GAEAVQV-LKDRA 235
+++AVVTGA G+G IVK L +Y R+ + G E ++ +
Sbjct: 4 KKKIAVVTGATGGMGIEIVKDLSRD--HIVYALGRNPEHLAALAEIEGVEPIESDIVKEV 61
Query: 236 STVPFAIQA------------------------------EKTILTNYLGLVRTCVFLFPL 265
+ + N + L P
Sbjct: 62 L-EEGGVDKLKNLDHVDTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPA 120
Query: 266 LR-RHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDS 324
LR V+ ++S AG+ P +
Sbjct: 121 LRAASGCVIYINSGAGN-------------------------------------GPHPGN 143
Query: 325 A-YAVSKIGVNLLT---RIYQKKFDCELGNQDKVINAVHPGYVATNM 367
YA SK + L R E N ++ V PG T M
Sbjct: 144 TIYAASKHALRGLADAFRK-------EEANNGIRVSTVSPGPTNTPM 183
Score = 34.5 bits (80), Expect = 0.054
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 416 EKTILTNYLGLVRTCVFLFPLLR-RHARVVNLSSSAGH 452
+ N + L P LR V+ ++S AG+
Sbjct: 100 HAHLDLNVIVPAELSRQLLPALRAASGCVIYINSGAGN 137
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics,
PSI-2, dehydrogenase, protein structure initiative;
2.30A {Oenococcus oeni psu-1}
Length = 262
Score = 54.8 bits (133), Expect = 1e-08
Identities = 37/231 (16%), Positives = 62/231 (26%), Gaps = 94/231 (40%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGYI----YLTARDKKKGAEAVQVLKDRASTVPFAI 242
+V V+ G K LG K+ + Y A+D + L+D+ + V
Sbjct: 12 KVIVIAGGIKNLGALTAKTFAL--ESVNLVLHYHQAKDSDTANKLKDELEDQGAKV-ALY 68
Query: 243 QA------------EKT--------ILTNYLGLVR--------------------TCVFL 262
Q+ + I N +G V +
Sbjct: 69 QSDLSNEEEVAKLFDFAEKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYF 128
Query: 263 F-----PLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHV 317
F + + ++ +++S
Sbjct: 129 FIKQAAKHMNPNGHIITIATSLL------------------------------------- 151
Query: 318 AKGWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
A S YA +K V TR K EL Q +NA+ PG + T+
Sbjct: 152 AAYTGFYSTYAGNKAPVEHYTRAASK----ELMKQQISVNAIAPGPMDTSF 198
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 56.2 bits (135), Expect = 2e-08
Identities = 48/289 (16%), Positives = 101/289 (34%), Gaps = 69/289 (23%)
Query: 150 RDTYLHPPSGASMWSRQGVDGPL------SITGIVNGSVDPSERVAVVTGANKGLGFGIV 203
D Y + +W+R D SI IV +P + + G KG
Sbjct: 1633 MDLYKTSKAAQDVWNR--ADNHFKDTYGFSILDIVIN--NPVN-LTIHFGGEKG------ 1681
Query: 204 KSLCEQFDGYIYLTARDKKKGAEAV-QVLKDRASTVPFAIQAEKTILTNY----LGLVRT 258
K + E + I+ T D K E + + + + +++ F + T + L L+
Sbjct: 1682 KRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLME- 1740
Query: 259 CVFLFPLLRRHARVVNLSSSAGH-------LSQITN-LELKKRLRQLREPVSLRSLNITK 310
F L+ + ++ AGH L+ + + + ++ + + V R + +
Sbjct: 1741 -KAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVE-V---VFYRGMTMQV 1795
Query: 311 EHPRAHVAKGWPDSAYAV--SKIGVNL--------LTRIYQKK-FDCELGNQDKVINAVH 359
PR + + A+ ++ + + R+ ++ + E+ N N
Sbjct: 1796 AVPRDELGRSNY-GMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVN----YNV-- 1848
Query: 360 PG--YV----------ATNMSSFMG--NVNIFDDSSTFNAFERVISHFL 394
YV TN+ +F+ ++I + + + E V H
Sbjct: 1849 ENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLS-LEEVEGHLF 1896
Score = 43.1 bits (101), Expect = 2e-04
Identities = 34/219 (15%), Positives = 60/219 (27%), Gaps = 82/219 (37%)
Query: 301 VSLRSLNI------------TKEHPRAHVAK-------GWPDSAYA-----VSKIGVNLL 336
S R L + T A + P +A + L+
Sbjct: 4 YSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTP--AELV 61
Query: 337 TRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMGNVNIFDD--SSTFNAFERVISHFL 394
+ F LG YV++ + V FD + FE +L
Sbjct: 62 GK-----F---LG------------YVSSLVEP--SKVGQFDQVLNLCLTEFEN---CYL 96
Query: 395 IGQQINTFIPAIYT-VPFAIQAEKTILTNYLGLVRTCVFL-FPLLRRHARVVNLSSSAGH 452
G I+ + + K ++ NY+ + P ++ +SA
Sbjct: 97 EGNDIHALAAKLLQENDTTLVKTKELIKNYI---TARIMAKRPFDKKS-------NSA-- 144
Query: 453 LSQITNLELKKRLM---------EDCVSE-RQLTDMMYE 481
L + +L+ +D E R L Y+
Sbjct: 145 LFRAVGEG-NAQLVAIFGGQGNTDDYFEELRDL----YQ 178
Score = 40.0 bits (93), Expect = 0.002
Identities = 53/299 (17%), Positives = 84/299 (28%), Gaps = 108/299 (36%)
Query: 82 SPLRNAVLQSEA-------GDGNG-------------SNIHVHIHMNESQGMHWGTSSHI 121
S L AV + A G GN ++ V + S
Sbjct: 143 SALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTT 202
Query: 122 PDPASSYPPMVPMPDHTYAQNPYPYPPARDTYL-HPPSGASMWSRQGVDGPLS------- 173
D + + + + +NP P YL P S PL
Sbjct: 203 LDAEKVFTQGLNI--LEWLENPSNTPD--KDYLLSIP--ISC--------PLIGVIQLAH 248
Query: 174 --ITGIVNGSVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVL 231
+T + G P E + + GA G G+V A A+
Sbjct: 249 YVVTAKLLG-FTPGELRSYLKGAT-GHSQGLV--------------------TAVAIAET 286
Query: 232 KDRASTVPFAIQAEK--TILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGH------LS 283
S F + K T+L ++G+ R C +P ++ S LS
Sbjct: 287 DSWES---FFVSVRKAITVLF-FIGV-R-CYEAYPNTSLPPSILEDSLENNEGVPSPMLS 340
Query: 284 QITNL---ELKKRLRQLRE------------------------PVSLRSLNITKEHPRA 315
I+NL +++ + + P SL LN+T +A
Sbjct: 341 -ISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKA 398
Score = 36.6 bits (84), Expect = 0.022
Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 17/103 (16%)
Query: 371 MGNVNIFDDSSTF-NAFERVISHFL--IGQQINTFI---PAIYTVPFAIQAEKTILTNYL 424
MG ++++ S + + R +HF G I + P T+ F + K I NY
Sbjct: 1631 MG-MDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYS 1689
Query: 425 GLVR--------TCVFLFPLLRRHARVVNLSSSAGHLS--QIT 457
++ +F + H+ S G LS Q T
Sbjct: 1690 AMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFT 1732
Score = 35.8 bits (82), Expect = 0.038
Identities = 30/209 (14%), Positives = 60/209 (28%), Gaps = 75/209 (35%)
Query: 295 RQLREPVSLRSLNITKEHPRAH-VAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDK 353
++ L+I +P + G +I N I++ D +L +K
Sbjct: 1651 NHFKDTYGFSILDIVINNPVNLTIHFGGEKGK----RIRENYSAMIFETIVDGKL-KTEK 1705
Query: 354 VINAVHPGYVATNMSSFMGNVNIFDD-----SSTFNAFERVISHFLIGQQINTFIPAIYT 408
+ ++ + +S+ F S+T Q PA+
Sbjct: 1706 IFKEINE-----HSTSYT-----FRSEKGLLSATQFT------------Q-----PALTL 1738
Query: 409 VPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGH----------LSQITN 458
+ A F L+ + ++ AGH L+ + +
Sbjct: 1739 MEKAA--------------------FEDLKSKGLIPADATFAGHSLGEYAALASLADVMS 1778
Query: 459 LE-----LKKR--LMEDCVSERQLTDMMY 480
+E + R M+ V +L Y
Sbjct: 1779 IESLVEVVFYRGMTMQVAVPRDELGRSNY 1807
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Length = 267
Score = 54.5 bits (132), Expect = 2e-08
Identities = 45/229 (19%), Positives = 68/229 (29%), Gaps = 92/229 (40%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLT-ARDKKKGAEAVQVLKDRASTVPFAIQA 244
+VA+VTGA++G+G I L DG+ + + A E ++ QA
Sbjct: 28 KVAIVTGASRGIGAAIAARLAS--DGFTVVINYAGKAAAAEEVAGKIEAAGGKA-LTAQA 84
Query: 245 ---------------------------------------------EKTILTNYLGLVRTC 259
++ I N G T
Sbjct: 85 DVSDPAAVRRLFATAEEAFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTL 144
Query: 260 VFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAK 319
LR R++N+S+S L
Sbjct: 145 REAAQRLRVGGRIINMSTSQVGL------------------------------------- 167
Query: 320 GWPDSA-YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
P YA +K GV +T + K EL +D +NAV PG AT++
Sbjct: 168 LHPSYGIYAAAKAGVEAMTHVLSK----ELRGRDITVNAVAPGPTATDL 212
Score = 27.9 bits (63), Expect = 7.4
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 416 EKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLS 454
++ I N G T LR R++N+S+S L
Sbjct: 130 DRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTSQVGLL 168
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, protein structure initiati nysgrc; 2.30A
{Sinorhizobium meliloti}
Length = 271
Score = 54.1 bits (131), Expect = 2e-08
Identities = 42/266 (15%), Positives = 74/266 (27%), Gaps = 107/266 (40%)
Query: 155 HPPSGASMWSRQGVDGPLSITGIVNGSVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYI 214
H SG + + + + + G + A VTG ++G+G I K L +G
Sbjct: 6 HHSSGVDLGTENLYFQSMMTSISLAG------KTAFVTGGSRGIGAAIAKRLAL--EGAA 57
Query: 215 ----YLTARDKKKGAEAVQVLKD---RASTVPFAIQA----------------------- 244
Y ++ V ++ RA AI+A
Sbjct: 58 VALTY--VNAAERAQAVVSEIEQAGGRA----VAIRADNRDAEAIEQAIRETVEALGGLD 111
Query: 245 ----------------------EKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHL 282
++ + N+ L R++ + S+ L
Sbjct: 112 ILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSNLAEL 171
Query: 283 SQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSA-YAVSKIGVNLLTRIYQ 341
WP + Y+ SK + LT+
Sbjct: 172 V------------------------------------PWPGISLYSASKAALAGLTKGLA 195
Query: 342 KKFDCELGNQDKVINAVHPGYVATNM 367
+ +LG + +N VHPG T+M
Sbjct: 196 R----DLGPRGITVNIVHPGSTDTDM 217
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase;
protein-NADPH-active site inhibitor complex,
oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A
{Magnaporthe grisea} SCOP: c.2.1.2
Length = 274
Score = 53.8 bits (130), Expect = 3e-08
Identities = 46/231 (19%), Positives = 62/231 (26%), Gaps = 95/231 (41%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGYI----YLTARDKKKGAEAVQVLKDRASTVPFAI 242
+VA+ TGA +G+G GI L G Y K E V LK + AI
Sbjct: 22 KVALTTGAGRGIGRGIAIELGR--RGASVVVNY--GSSSKAAEEVVAELKKLGAQG-VAI 76
Query: 243 QA---------------------------------------------EKTILTNYLGLVR 257
QA +K N G
Sbjct: 77 QADISKPSEVVALFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFF 136
Query: 258 TCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHV 317
RR R++ SS A V
Sbjct: 137 VAQQGLKHCRRGGRIILTSSIAA------------------------------------V 160
Query: 318 AKGWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
G P+ + YA SK V R + + G + +N + PG V T+M
Sbjct: 161 MTGIPNHALYAGSKAAVEGFCRAFAV----DCGAKGVTVNCIAPGGVKTDM 207
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta,
oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB:
3o4r_A*
Length = 260
Score = 53.3 bits (129), Expect = 4e-08
Identities = 40/233 (17%), Positives = 72/233 (30%), Gaps = 90/233 (38%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLK------------- 232
+VA+VT + G+G I + L + G ++ +++R ++ V L+
Sbjct: 15 KVALVTASTDGIGLAIARRLAQD--GAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHV 72
Query: 233 ----DRASTVPFAIQA----------------------------EKTILTNYLGLVRTCV 260
DR V A+ +K + N V
Sbjct: 73 GKAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTK 132
Query: 261 FLFPLL--RRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVA 318
+ P + R V+ +SS + HP ++
Sbjct: 133 AVVPEMEKRGGGSVLIVSSVGAY------------------------------HPFPNLG 162
Query: 319 KGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM 371
Y VSK + LT+ EL ++ +N + PG + TN S +
Sbjct: 163 ------PYNVSKTALLGLTKNLAV----ELAPRNIRVNCLAPGLIKTNFSQVL 205
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site
inhibitor complex, dinucleotide binding fold,
oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea}
SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
Length = 283
Score = 53.4 bits (129), Expect = 4e-08
Identities = 37/234 (15%), Positives = 61/234 (26%), Gaps = 101/234 (43%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGYI----YLTARDKKKGAEAVQVLKD---RASTVP 239
+VA+VTGA +G+G + L G Y A + E V +K A
Sbjct: 30 KVALVTGAGRGIGREMAMELGR--RGCKVIVNY--ANSTESAEEVVAAIKKNGSDA---- 81
Query: 240 FAIQA---------------------------------------------EKTILTNYLG 254
++A ++ N G
Sbjct: 82 ACVKANVGVVEDIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRG 141
Query: 255 LVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPR 314
+ L R++ + S G
Sbjct: 142 QFFVAREAYKHLEIGGRLILMGSITGQ--------------------------------- 168
Query: 315 AHVAKGWPDSA-YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
AK P A Y+ SK + R ++ ++ +N V PG + T+M
Sbjct: 169 ---AKAVPKHAVYSGSKGAIETFARCMAI----DMADKKITVNVVAPGGIKTDM 215
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU
SDR, fungi, oxidoreductase; HET: GOL; 1.48A
{Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A*
3itd_A
Length = 270
Score = 53.0 bits (128), Expect = 5e-08
Identities = 42/234 (17%), Positives = 64/234 (27%), Gaps = 101/234 (43%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGYI----YLTARDKKKGAEAVQVLKD---RASTVP 239
+VA+VTG+ +G+G + L G Y A K + V +K A
Sbjct: 19 KVALVTGSGRGIGAAVAVHLGR--LGAKVVVNY--ANSTKDAEKVVSEIKALGSDA---- 70
Query: 240 FAIQA---------------------------------------------EKTILTNYLG 254
AI+A ++ N G
Sbjct: 71 IAIKADIRQVPEIVKLFDQAVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRG 130
Query: 255 LVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPR 314
+ L R+V SS+
Sbjct: 131 QFFVAREAYRHLTEGGRIVLTSSNTSK--------------------------------- 157
Query: 315 AHVAKGWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
P S Y+ SK V+ RI+ K + G++ +NAV PG T+M
Sbjct: 158 ---DFSVPKHSLYSGSKGAVDSFVRIFSK----DCGDKKITVNAVAPGGTVTDM 204
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Length = 281
Score = 53.0 bits (128), Expect = 5e-08
Identities = 40/237 (16%), Positives = 67/237 (28%), Gaps = 93/237 (39%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPFAIQA- 244
R+A+VTG G+G GI ++L + GY + +T R A + R + A+
Sbjct: 34 RIALVTGGGTGVGRGIAQALSAE--GYSVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCD 91
Query: 245 -----------EKT--------ILTNYLGLVR---------------------TCVFL-- 262
+L N G T FL
Sbjct: 92 VGDPDQVAALFAAVRAEFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCT 151
Query: 263 ---FPLLRRHA----RVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRA 315
F +++ R++N S + PR
Sbjct: 152 QHAFRMMKAQTPRGGRIINNGSISAQT------------------------------PRP 181
Query: 316 HVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG 372
+ A Y +K + LT+ + D + G AT+M++ M
Sbjct: 182 NSA------PYTATKHAITGLTKSTAL----DGRMHDIACGQIDIGNAATDMTARMS 228
>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain
dehydrogenase/reductase family, lyase; 2.00A
{Arthrobacter SP}
Length = 244
Score = 52.5 bits (127), Expect = 6e-08
Identities = 28/209 (13%), Positives = 54/209 (25%), Gaps = 54/209 (25%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPFAIQAE 245
+A+VT A G V++L + GY + AE + + T+ A Q
Sbjct: 2 VIALVTHARHFAGPAAVEALTQD--GYTVVCHDASFADAAERQRFESENPGTIALAEQKP 59
Query: 246 KTILTNYLGLVRTCVFLFPLLRRHARV---VNLSSSAGHLSQITNLELKKRLRQLREP-- 300
+ LV + + + V+ + I + L E
Sbjct: 60 E-------RLVDATL------QHGEAIDTIVS---NDY----IPRPMNRLPLEGTSEADI 99
Query: 301 -----VSLRS-LNITKEHPRAHVAKGW---------------PDSA-YAVSKIGVNLLTR 338
+ + + A G + Y ++ L
Sbjct: 100 RQMFEALSIFPILLLQSAIAPLRAAGGASVIFITSSVGKKPLAYNPLYGPARAATVALVE 159
Query: 339 IYQKKFDCELGNQDKVINAVHPGYVATNM 367
K L ++ A+ P +
Sbjct: 160 SAAK----TLSRDGILLYAIGPNFFNNPT 184
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or
NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP:
c.2.1.2 PDB: 1dir_A* 1hdr_A*
Length = 241
Score = 52.3 bits (126), Expect = 7e-08
Identities = 23/222 (10%), Positives = 48/222 (21%), Gaps = 84/222 (37%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY----IYLTARDKKKGAEAVQV---LKDRASTVP 239
R +V G LG V++ + I + ++ + V++ ++A V
Sbjct: 8 RRVLVYGGRGALGSRCVQAFRA--RNWWVASIDVVENEEASASVIVKMTDSFTEQADQVT 65
Query: 240 FAIQA-------------------------------EKTILTNYLGLVRTCVFLFPLLRR 268
+ + + + L+
Sbjct: 66 AEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKE 125
Query: 269 HARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPD-SAYA 327
+ + A G P Y
Sbjct: 126 GGLLTLAGAKAAL-------------------------------------DGTPGMIGYG 148
Query: 328 VSKIGVNLLTRIYQKKFDCELGNQDKVI--NAVHPGYVATNM 367
++K V+ L + + AV P + T M
Sbjct: 149 MAKGAVHQLCQS----LAGKNSGMPSGAAAIAVLPVTLDTPM 186
Score = 29.2 bits (66), Expect = 2.7
Identities = 2/37 (5%), Positives = 8/37 (21%)
Query: 416 EKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGH 452
+ + + L+ + + A
Sbjct: 102 DLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAAL 138
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Length = 272
Score = 52.6 bits (127), Expect = 8e-08
Identities = 37/235 (15%), Positives = 65/235 (27%), Gaps = 89/235 (37%)
Query: 185 SERVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPF--- 240
+++A+VTGA G+G + +L GY + L R E + D A VP
Sbjct: 27 GKKIAIVTGAGSGVGRAVAVALAGA--GYGVALAGRRLDALQETAAEIGDDALCVPTDVT 84
Query: 241 ---AIQA------------------------------------EKTILTNYLGLVRTCVF 261
+++A ++ + TN G
Sbjct: 85 DPDSVRALFTATVEKFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQE 144
Query: 262 LFPLLRRHA----RVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHV 317
F +++ R++N S + PR +
Sbjct: 145 AFRVMKAQEPRGGRIINNGSISATS------------------------------PRPYS 174
Query: 318 AKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG 372
A Y +K + LT+ + D + G T M+ M
Sbjct: 175 A------PYTATKHAITGLTKSTSL----DGRVHDIACGQIDIGNADTPMAQKMK 219
>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of
seven strands in the order 3214567; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 278
Score = 52.2 bits (126), Expect = 1e-07
Identities = 40/243 (16%), Positives = 71/243 (29%), Gaps = 98/243 (40%)
Query: 185 SERVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKDRASTVPFA-- 241
+E+VA++TG++ G+G + G + +T R ++ E Q + +
Sbjct: 5 AEKVAIITGSSNGIGRATAVLFARE--GAKVTITGRHAERLEETRQQILAAGVSEQNVNS 62
Query: 242 IQA-------------------------------------------------EKTILTNY 252
+ A + T+ N
Sbjct: 63 VVADVTTDAGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNL 122
Query: 253 LGLVRTCVFLFPLLR-RHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKE 311
++ P L +VN+SS A L
Sbjct: 123 RSVIALTKKAVPHLSSTKGEIVNISSIASGL----------------------------- 153
Query: 312 HPRAHVAKGWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKV-INAVHPGYVATNMSS 369
PD Y+++K ++ TR +L Q + +N++ PG VAT S
Sbjct: 154 -------HATPDFPYYSIAKAAIDQYTRNTAI----DLI-QHGIRVNSISPGLVATGFGS 201
Query: 370 FMG 372
MG
Sbjct: 202 AMG 204
>3cxt_A Dehydrogenase with different specificities; rossman fold,
oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis}
PDB: 3cxr_A* 3o03_A*
Length = 291
Score = 52.2 bits (126), Expect = 1e-07
Identities = 43/228 (18%), Positives = 71/228 (31%), Gaps = 89/228 (39%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLK------------- 232
++A+VTGA+ G+GF I + + G I +++ + K
Sbjct: 35 KIALVTGASYGIGFAIASAYAKA--GATIVFNDINQELVDRGMAAYKAAGINAHGYVCDV 92
Query: 233 -DRASTVPFAIQAEKT-----ILTNYLGLVR--------------------TCVFLFP-- 264
D Q E IL N G++R F+
Sbjct: 93 TDEDGIQAMVAQIESEVGIIDILVNNAGIIRRVPMIEMTAAQFRQVIDIDLNAPFIVSKA 152
Query: 265 -----LLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAK 319
+ + H +++N+ S L + T V+
Sbjct: 153 VIPSMIKKGHGKIINICSMMSELGRET------------------------------VS- 181
Query: 320 GWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
AYA +K G+ +LT K E G + N + PGY+AT
Sbjct: 182 -----AYAAAKGGLKMLT----KNIASEYGEANIQCNGIGPGYIATPQ 220
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter
sphaeroides}
Length = 266
Score = 51.8 bits (125), Expect = 1e-07
Identities = 42/241 (17%), Positives = 66/241 (27%), Gaps = 80/241 (33%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKD--RASTVPFAIQ 243
+VA+VTGA G+G +V +L G + + R A + + D A+
Sbjct: 29 KVALVTGAAGGIGGAVVTALRAA--GARVAVADRAVAGIAADLHLPGDLREAAYADGLPG 86
Query: 244 A-------------------------------EKTILTNYLGLVRTCVFLFPLL--RRHA 270
A ++ N R C PL+
Sbjct: 87 AVAAGLGRLDIVVNNAGVISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAAGGG 146
Query: 271 RVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPD-SAYAVS 329
+VN++S G + P + Y ++
Sbjct: 147 AIVNVASCWGL-------------------------------------RPGPGHALYCLT 169
Query: 330 KIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMGNVNIFDDSSTFNAFERV 389
K + LT+ + Q INAV P V T M FD R
Sbjct: 170 KAALASLTQCMGM----DHAPQGIRINAVCPNEVNTPMLRTGFAKRGFDPDRAVAELGRT 225
Query: 390 I 390
+
Sbjct: 226 V 226
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle
structural genomics CEN infectious disease,
oxidoreductase; 2.30A {Mycobacterium smegmatis}
Length = 266
Score = 51.8 bits (125), Expect = 1e-07
Identities = 40/230 (17%), Positives = 64/230 (27%), Gaps = 91/230 (39%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKD----RASTVPF- 240
+ A++TGA KG+G I ++ G + L+ RD + A + L + TV
Sbjct: 21 KRALITGATKGIGADIARAFAAA--GARLVLSGRDVSELDAARRALGEQFGTDVHTVAID 78
Query: 241 -----AIQA--EKT--------ILTNYLGLVR--------------------TCVFLF-- 263
A + +L N G+ L
Sbjct: 79 LAEPDAPAELARRAAEAFGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLAS 138
Query: 264 ----PLLRRHA--RVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHV 317
++ ++ ++S+A P
Sbjct: 139 AVGKAMVAAGEGGAIITVASAAALA------------------------------PLPDH 168
Query: 318 AKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
AY SK G+ + T K ELG N+V P V T M
Sbjct: 169 Y------AYCTSKAGLVMAT----KVLARELGPHGIRANSVCPTVVLTEM 208
>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET:
NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A*
1sep_A* 1z6z_A*
Length = 259
Score = 51.6 bits (124), Expect = 1e-07
Identities = 28/246 (11%), Positives = 53/246 (21%), Gaps = 101/246 (41%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDG--YIYLTARDKKKGAEAVQVLKDRASTVPFAIQA 244
V V+TGA++G G + L + ++AR + + + L + + + A
Sbjct: 7 AVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAA 66
Query: 245 -----------------------------------------------------EKTILTN 251
N
Sbjct: 67 ADLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALN 126
Query: 252 YLGLVRTCVFLFPLLRR----HARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLN 307
++ + VVN+SS
Sbjct: 127 LTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCAL-------------------------- 160
Query: 308 ITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
KGW Y K ++L ++ E + + PG + +M
Sbjct: 161 --------QPYKGW--GLYCAGKAARDMLYQVLAA----E--EPSVRVLSYAPGPLDNDM 204
Query: 368 SSFMGN 373
Sbjct: 205 QQLARE 210
Score = 28.1 bits (63), Expect = 6.2
Identities = 6/41 (14%), Positives = 10/41 (24%), Gaps = 4/41 (9%)
Query: 416 EKTILTNYLGLVRTCVFLFPLLRR----HARVVNLSSSAGH 452
N ++ + VVN+SS
Sbjct: 120 NNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCAL 160
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET:
NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Length = 265
Score = 51.4 bits (124), Expect = 2e-07
Identities = 41/230 (17%), Positives = 63/230 (27%), Gaps = 91/230 (39%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLK------------- 232
VAVVTG + G+G V+ L E G + ARD ++ A L+
Sbjct: 9 AVAVVTGGSSGIGLATVELLLEA--GAAVAFCARDGERLRAAESALRQRFPGARLFASVC 66
Query: 233 ---DRASTVPFAIQAEKT-----IL-------------------------TNYLGLVRTC 259
D FA E+T IL + ++
Sbjct: 67 DVLDALQVRAFAEACERTLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPV 126
Query: 260 VFLFPLL--RRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHV 317
P L R A +V ++S P H+
Sbjct: 127 RAFLPQLESRADAAIVCVNSLLAS------------------------------QPEPHM 156
Query: 318 AKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
A + ++ GV L R E + +N + G V +
Sbjct: 157 V------ATSAARAGVKNLVRSMAF----EFAPKGVRVNGILIGLVESGQ 196
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate
5-dehydratase, NAD(P) dependent, enzyme initiative, EFI,
oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae}
Length = 273
Score = 51.0 bits (123), Expect = 3e-07
Identities = 43/226 (19%), Positives = 60/226 (26%), Gaps = 87/226 (38%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARD----------KKKGAEAVQV---LK 232
R AVVTGA G+G I G ++ R G A V L
Sbjct: 32 RTAVVTGAGSGIGRAIAHGYARA--GAHVLAWGRTDGVKEVADEIADGGGSAEAVVADLA 89
Query: 233 DRASTVPFAIQAEKT----ILTNYLGLVR--------------------TCVFLFP---- 264
D A + T +L N G++ ++
Sbjct: 90 DLEGAANVAEELAATRRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFG 149
Query: 265 ---LLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGW 321
L R+V ++S G
Sbjct: 150 TAMLAHGSGRIVTIASMLSFQG------------------------------------GR 173
Query: 322 PDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
+AYA SK V LT + E + +NA+ PGYV T
Sbjct: 174 NVAAYAASKHAVVGLT----RALASEWAGRGVGVNALAPGYVVTAN 215
>1zk4_A R-specific alcohol dehydrogenase; short chain
reductases/dehydrogenases, magnesium dependence,
oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis}
SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A*
1zk1_A* 1zk2_A 1zk3_A
Length = 251
Score = 50.6 bits (122), Expect = 3e-07
Identities = 40/236 (16%), Positives = 68/236 (28%), Gaps = 103/236 (43%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLK--DRASTVP---- 239
+VA++TG G+G I E+ G + +T R G +A + + D+
Sbjct: 7 KVAIITGGTLGIGLAIATKFVEE--GAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSS 64
Query: 240 ----------FAIQA---------------------------EKTILTNYLGLVRTCVFL 262
+A K + N G VF
Sbjct: 65 DEDGWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDG-----VFF 119
Query: 263 -----FPLLRRH---ARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPR 314
++ A ++N+SS G +
Sbjct: 120 GTRLGIQRMKNKGLGASIINMSSIEGFV-------------------------------- 147
Query: 315 AHVAKGWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVI--NAVHPGYVATNM 367
G P AY SK V ++++ + +D + N VHPGY+ T +
Sbjct: 148 -----GDPSLGAYNASKGAVRIMSKSAAL----DCALKDYDVRVNTVHPGYIKTPL 194
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase,
short chain dehydrogenase/reductase, oxidoreductase;
HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB:
3ai2_A* 3ai1_A*
Length = 263
Score = 50.6 bits (122), Expect = 3e-07
Identities = 32/230 (13%), Positives = 67/230 (29%), Gaps = 92/230 (40%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKDRASTVPFAIQA- 244
+VAV+TG++ G+G I + ++ G +I L AR + EA + LK++ +
Sbjct: 8 KVAVITGSSSGIGLAIAEGFAKE--GAHIVLVARQVDRLHEAARSLKEKFGVRVLEVAVD 65
Query: 245 --------------------------------------------EKTILTNYLGLVRTCV 260
+ + VR
Sbjct: 66 VATPEGVDAVVESVRSSFGGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLAR 125
Query: 261 FLFPLL--RRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVA 318
L P + R +++ +S + +
Sbjct: 126 GLVPGMRARGGGAIIHNASICA-VQPLWYE------------------------------ 154
Query: 319 KGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKV-INAVHPGYVATNM 367
Y V+K + + ++ E+ +D + +N ++PG + T
Sbjct: 155 -----PIYNVTKAALMMFSKTLAT----EVI-KDNIRVNCINPGLILTPD 194
Score = 27.5 bits (62), Expect = 9.6
Identities = 6/38 (15%), Positives = 13/38 (34%), Gaps = 2/38 (5%)
Query: 416 EKTILTNYLGLVRTCVFLFPLL--RRHARVVNLSSSAG 451
+ + VR L P + R +++ +S
Sbjct: 110 QFYWELLVMAAVRLARGLVPGMRARGGGAIIHNASICA 147
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase,
structural genomics, SH dehydrogenase/reductase,
inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP:
c.2.1.2
Length = 267
Score = 49.9 bits (120), Expect = 5e-07
Identities = 38/226 (16%), Positives = 65/226 (28%), Gaps = 86/226 (38%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVP-FAIQA 244
+VA+VTGA +G+G ++L + G + L + + G + L ++ IQ
Sbjct: 8 KVALVTGAAQGIGRAFAEALLLK--GAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQC 65
Query: 245 -------------------------------------EKTILTNYLGLVRTCVFLFPLLR 267
EKT+ N + ++ +
Sbjct: 66 DVADQQQLRDTFRKVVDHFGRLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMS 125
Query: 268 -----RHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWP 322
++N+SS AG +
Sbjct: 126 KQNGGEGGIIINMSSLAGLM-------------------------------------PVA 148
Query: 323 D-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
Y SK G+ TR L N +NA+ PG+V T +
Sbjct: 149 QQPVYCASKHGIVGFTR--SAALAANLMNSGVRLNAICPGFVNTAI 192
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP]
reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc;
2.16A {Bacteroides thetaiotaomicron}
Length = 250
Score = 49.9 bits (120), Expect = 5e-07
Identities = 34/244 (13%), Positives = 68/244 (27%), Gaps = 93/244 (38%)
Query: 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKD------ 233
S++ + +A++TGA++G+G I L GY + L AR K+ + +
Sbjct: 2 SLEKQKGLAIITGASQGIGAVIAAGLATD--GYRVVLIARSKQNLEKVHDEIMRSNKHVQ 59
Query: 234 RASTVPF------AIQA----------------------------------EKTILTNYL 253
+P K + N +
Sbjct: 60 EPIVLPLDITDCTKADTEIKDIHQKYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVI 119
Query: 254 GLVRTCVFLFPLL--RRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKE 311
+ ++ +++ + N++S A
Sbjct: 120 AQYGILKTVTEIMKVQKNGYIFNVASRAAK------------------------------ 149
Query: 312 HPRAHVAKGWPDSA-YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSF 370
G+ D Y +K + L + EL + + PG+V T+M+
Sbjct: 150 -------YGFADGGIYGSTKFALLGLAESLYR----ELAPLGIRVTTLCPGWVNTDMAKK 198
Query: 371 MGNV 374
G
Sbjct: 199 AGTP 202
Score = 29.5 bits (67), Expect = 2.1
Identities = 5/39 (12%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 416 EKTILTNYLGLVRTCVFLFPLL--RRHARVVNLSSSAGH 452
K + N + + ++ +++ + N++S A
Sbjct: 111 RKIMEINVIAQYGILKTVTEIMKVQKNGYIFNVASRAAK 149
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics
center for infectious DI dehydrogenase, oxidoreductase;
HET: 1PE; 1.85A {Mycobacterium smegmatis}
Length = 264
Score = 49.1 bits (118), Expect = 9e-07
Identities = 41/245 (16%), Positives = 70/245 (28%), Gaps = 95/245 (38%)
Query: 170 GPLSITGIVNGSVDPSERVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAV 228
GP S+ G++ +V V++G LG + + EQ G + L AR ++ +
Sbjct: 1 GPGSMGGLLTD------KVVVISGVGPALGTTLARRCAEQ--GADLVLAARTVERLEDVA 52
Query: 229 QVLKD---RASTVPF------AIQA----------------------------------- 244
+ + D RA +V +
Sbjct: 53 KQVTDTGRRALSVGTDITDDAQVAHLVDETMKAYGRVDVVINNAFRVPSMKPFANTTFEH 112
Query: 245 -EKTILTNYLGLVRTCVFLFPLLR-RHARVVNLSSSAGHLSQITNLELKKRLRQLREPVS 302
I G +R P L VVN++S SQ
Sbjct: 113 MRDAIELTVFGALRLIQGFTPALEESKGAVVNVNSMVVRHSQAKY--------------- 157
Query: 303 LRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGY 362
AY ++K + +++ ELG + +N+V PGY
Sbjct: 158 ---------------------GAYKMAKSALLAMSQTLAT----ELGEKGIRVNSVLPGY 192
Query: 363 VATNM 367
+
Sbjct: 193 IWGGT 197
>3gem_A Short chain dehydrogenase; structural genomics, APC65077,
oxidoreductase, PSI-2, protein structure initiative;
1.83A {Pseudomonas syringae PV}
Length = 260
Score = 49.1 bits (118), Expect = 9e-07
Identities = 29/223 (13%), Positives = 53/223 (23%), Gaps = 86/223 (38%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARD--------KKKGAEAVQV-LKDRAS 236
++TGA++ +G L E G+ + ++ R ++ GA A+
Sbjct: 28 APILITGASQRVGLHCALRLLEH--GHRVIISYRTEHASVTELRQAGAVALYGDFSCETG 85
Query: 237 T---VPFAIQA--------------------------EKTILTNYLGLVRTCVFLFPLLR 267
+ + + L + PLL
Sbjct: 86 IMAFIDLLKTQTSSLRAVVHNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLT 145
Query: 268 --RHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSA 325
A +V++S KG
Sbjct: 146 ASEVADIVHISDDVTR-------------------------------------KGSSKHI 168
Query: 326 -YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
Y +K G+ LT + KV N + P +
Sbjct: 169 AYCATKAGLESLTLSFAA----RFAPLVKV-NGIAPALLMFQP 206
>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet
of seven strands in the order 3214567; HET: NDP; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 280
Score = 49.5 bits (119), Expect = 9e-07
Identities = 37/221 (16%), Positives = 85/221 (38%), Gaps = 54/221 (24%)
Query: 185 SERVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTV--PFA 241
S + ++TG++ G+G ++ G + +T R ++ E Q++ + +
Sbjct: 5 SNKTVIITGSSNGIGRTTAILFAQE--GANVTITGRSSERLEETRQIILKSGVSEKQVNS 62
Query: 242 IQAEKTILTNYLGLVRTCVFLFPLLRRHARV---VNLSSSAGHLSQIT--NLELKKRLRQ 296
+ A+ T ++ + + ++ ++ VN +AG + Q
Sbjct: 63 VVADVTTEDGQDQIINSTL------KQFGKIDVLVN---NAG----AAIPDAFGTTGTDQ 109
Query: 297 LREP------VSLRSL-NITKEHPRAHVAK----------------GWPD-SAYAVSKIG 332
+ ++L+++ +TK + H+ PD YA++K
Sbjct: 110 GIDIYHKTLKLNLQAVIEMTK-KVKPHLVASKGEIVNVSSIVAGPQAQPDFLYYAIAKAA 168
Query: 333 VNLLTRIYQKKFDCELGNQDKV-INAVHPGYVATNMSSFMG 372
++ TR +L + + +N+V PG V T ++ MG
Sbjct: 169 LDQYTRSTAI----DLA-KFGIRVNSVSPGMVETGFTNAMG 204
>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex,
oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi}
SCOP: c.2.1.2 PDB: 1mxf_A*
Length = 276
Score = 49.2 bits (118), Expect = 1e-06
Identities = 36/218 (16%), Positives = 64/218 (29%), Gaps = 47/218 (21%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAV-----QVLKDRASTVPF 240
AV+TG + +G I L + G+ + + R + A+ + A
Sbjct: 12 PAAVITGGARRIGHSIAVRLHQ--QGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKG 69
Query: 241 AIQAEKTILTNYLGLVRTCVFLF----------------PLLRRHARVVNLSSSAGHL-- 282
+ ++L ++ F PLL +
Sbjct: 70 DLSLSSSLLDCCEDIIDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQV 129
Query: 283 -SQI-TNLE-----LKKRLRQLREPVSLRS-----LNITKEHPRAHVAKGWPDSA-YAVS 329
+N ++ R+ E + RS +N+ A P Y ++
Sbjct: 130 AELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCD----AMTDLPLPGFCVYTMA 185
Query: 330 KIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
K + LTR EL + +NAV PG
Sbjct: 186 KHALGGLTRAAAL----ELAPRHIRVNAVAPGLSLLPP 219
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; 2.45A
{Sinorhizobium meliloti}
Length = 260
Score = 49.1 bits (118), Expect = 1e-06
Identities = 37/221 (16%), Positives = 71/221 (32%), Gaps = 78/221 (35%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAE----AVQV-LKDRASTVPF 240
+V V+TGA++G+G G+V++ ++ Y + T+R K A+ V + +
Sbjct: 29 KVVVITGASQGIGAGLVRAYRDR--NYRVVATSRSIKPSADPDIHTVAGDISKPETADRI 86
Query: 241 AIQAEKT-----ILTNYLGLVR--------------------TCVFLF------PLLR-R 268
+ + L N G+ F +L+
Sbjct: 87 VREGIERFGRIDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQG 146
Query: 269 HARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAV 328
+V++++S + G P + ++
Sbjct: 147 SGHIVSITTSLVDQPMV----------------------------------GMPSALASL 172
Query: 329 SKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSS 369
+K G+N +TR E +NAV PG + T M
Sbjct: 173 TKGGLNAVTRSLAM----EFSRSGVRVNAVSPGVIKTPMHP 209
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI,
structural genomics, dehydr oxidoreductase; 1.90A
{Salmonella enterica subsp}
Length = 255
Score = 48.6 bits (117), Expect = 1e-06
Identities = 48/213 (22%), Positives = 76/213 (35%), Gaps = 58/213 (27%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARD-----------KKKGAEAVQV---L 231
+ A+VTG+ +GLGF + L G + L +KG +A V +
Sbjct: 10 KTALVTGSARGLGFAYAEGLAAA--GARVILNDIRATLLAESVDTLTRKGYDAHGVAFDV 67
Query: 232 KDRASTVPFAIQAEKT-----ILTNYLGLVRTCVFLFPLLRRHA----RV--VNLSSSAG 280
D + + + IL N G+ P++ +V NL+S A
Sbjct: 68 TDELAIEAAFSKLDAEGIHVDILINNAGIQYRK----PMVELELENWQKVIDTNLTS-AF 122
Query: 281 HLSQITNLELKKRLRQLREP------VSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVN 334
+S+ KR+ SL S + R VA Y +K G+
Sbjct: 123 LVSR----SAAKRMIARNSGGKIINIGSLTS-----QAARPTVA------PYTAAKGGIK 167
Query: 335 LLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
+LT E + NA+ PGY+ T+M
Sbjct: 168 MLTCS----MAAEWAQFNIQTNAIGPGYILTDM 196
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain,
structura genomics consortium, SGC, oxidoreductase;
1.80A {Homo sapiens}
Length = 260
Score = 48.4 bits (116), Expect = 2e-06
Identities = 35/237 (14%), Positives = 55/237 (23%), Gaps = 100/237 (42%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKD---RASTVPF-- 240
+V VVTGA++G+G GI LC+ G +Y+T R Q + + V
Sbjct: 6 QVCVVTGASRGIGRGIALQLCKA--GATVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDS 63
Query: 241 -----------AIQAE------------------------------------KTILTNYL 253
+ E
Sbjct: 64 SQESEVRSLFEQVDREQQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLR 123
Query: 254 GLVRTCVFLFPLL--RRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKE 311
G V+ L+ +V +SS
Sbjct: 124 GHYFCSVYGARLMVPAGQGLIVVISSPGSL------------------------------ 153
Query: 312 HPRAHVAKGWPDSA-YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
+ + Y V K + L EL ++ PG V T +
Sbjct: 154 --------QYMFNVPYGVGKAACDKLAADCAH----ELRRHGVSCVSLWPGIVQTEL 198
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold,
oxidoreductase; 1.70A {Clostridium thermocellum atcc
27405} PDB: 3dij_A* 3ged_A 3geg_A*
Length = 247
Score = 48.3 bits (116), Expect = 2e-06
Identities = 36/224 (16%), Positives = 60/224 (26%), Gaps = 87/224 (38%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLK----------DRA 235
R +VTG G+G I E G + D+K+ A+ + D
Sbjct: 3 RGVIVTGGGHGIGKQICLDFLEA--GDKVCFIDIDEKRSADFAKERPNLFYFHGDVADPL 60
Query: 236 STVPFAIQAEKT-----ILTNYLGLVR--------------------TCVFLF------P 264
+ F A + +L N +
Sbjct: 61 TLKKFVEYAMEKLQRIDVLVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDE 120
Query: 265 LLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDS 324
L++ R++N++S+ + PDS
Sbjct: 121 LIKNKGRIINIASTRAF-------------------------------------QSEPDS 143
Query: 325 A-YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
YA +K G+ LT LG V N + PG++
Sbjct: 144 EAYASAKGGIVALTHALAM----SLGPDVLV-NCIAPGWINVTE 182
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide
catalysis, enantioselectivity, lyase; HET: RNO; 1.70A
{Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A
1px0_A* 1pwx_A* 1zo8_A*
Length = 254
Score = 48.3 bits (116), Expect = 2e-06
Identities = 26/242 (10%), Positives = 53/242 (21%), Gaps = 84/242 (34%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLK--------DRAST 237
A+VT G G L E G+ + K+ E +
Sbjct: 2 STAIVTNVKHFGGMGSALRLSEA--GHTVACHDESFKQKDELEAFAETYPQLKPMSEQEP 59
Query: 238 VPFAIQAEKT-----ILTNYLGLVR---------------------TCVFLF------PL 265
+L + F +
Sbjct: 60 AELIEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQM 119
Query: 266 LR-RHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDS 324
+ + ++ ++S+ P ++
Sbjct: 120 KKRKSGHIIFITSATP------------------------------FGPWKELS------ 143
Query: 325 AYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMGNVNIFDDSSTFN 384
Y ++ G L K ELG + + A+ P Y+ + S + + +
Sbjct: 144 TYTSARAGACTLANALSK----ELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHV 199
Query: 385 AF 386
A
Sbjct: 200 AH 201
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET:
CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB:
2hsd_A*
Length = 254
Score = 47.9 bits (115), Expect = 2e-06
Identities = 43/231 (18%), Positives = 68/231 (29%), Gaps = 98/231 (42%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKDRASTVP------ 239
+ ++TG +GLG + G + L ++GA + L D A
Sbjct: 6 KTVIITGGARGLGAEAARQAVAA--GARVVLADVLDEEGAATARELGDAARYQHLDVTIE 63
Query: 240 --------FAIQA---------------------------EKTILTNYLGLVRTCVFL-- 262
+A + K + N G VF+
Sbjct: 64 EDWQRVVAYAREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTG-----VFIGM 118
Query: 263 ---FPLLRRH--ARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHV 317
P ++ +VN+SS+AG +
Sbjct: 119 KTVIPAMKDAGGGSIVNISSAAGLM----------------------------------- 143
Query: 318 AKGWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
G S+Y SK GV L+++ ELG +N+VHPG T M
Sbjct: 144 --GLALTSSYGASKWGVRGLSKLAAV----ELGTDRIRVNSVHPGMTYTPM 188
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 2.00A {Mycobacterium ulcerans}
Length = 281
Score = 48.3 bits (116), Expect = 2e-06
Identities = 37/242 (15%), Positives = 60/242 (24%), Gaps = 105/242 (43%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKD------RASTVP 239
R +VTG G+G G+ L G + + R+ K A AVQ L+ P
Sbjct: 12 RTYLVTGGGSGIGKGVAAGLVAA--GASVMIVGRNPDKLAGAVQELEALGANGGAIRYEP 69
Query: 240 F------AIQA------------------------------------EKTILTNYLGLVR 257
+T+ N G
Sbjct: 70 TDITNEDETARAVDAVTAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNG--- 126
Query: 258 TCVFLF------PLLRRHA-RVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITK 310
++R V +SS A
Sbjct: 127 --TMYVLKHAAREMVRGGGGSFVGISSIAASN---------------------------- 156
Query: 311 EHPRAHVAKGWPDSA-YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSS 369
Y V+K V+ L + ELG +N++ PG + T++ +
Sbjct: 157 ---------THRWFGAYGVTKSAVDHLM----QLAADELGASWVRVNSIRPGLIRTDLVA 203
Query: 370 FM 371
+
Sbjct: 204 AI 205
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, SCD,
NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Length = 301
Score = 48.1 bits (115), Expect = 3e-06
Identities = 31/229 (13%), Positives = 52/229 (22%), Gaps = 90/229 (39%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPF----- 240
R AVVTG G+G + G + L+ D+ +AV L+ +
Sbjct: 32 RAAVVTGGASGIGLATATEFARR--GARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDV 89
Query: 241 ----AIQA-----------------------------------EKTILTNYLGLVRTCVF 261
+ I + G +
Sbjct: 90 RHLDEMVRLADEAFRLLGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEA 149
Query: 262 LFPLLRRH---ARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVA 318
P L + +S AG +
Sbjct: 150 FLPRLLEQGTGGHIAFTASFAGLVPNAGL------------------------------- 178
Query: 319 KGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
Y V+K GV L + E+ ++ + P V T +
Sbjct: 179 -----GTYGVAKYGVVGLAETLAR----EVKPNGIGVSVLCPMVVETKL 218
Score = 28.1 bits (63), Expect = 5.9
Identities = 7/43 (16%), Positives = 12/43 (27%), Gaps = 3/43 (6%)
Query: 416 EKTILTNYLGLVRTCVFLFPLLRRH---ARVVNLSSSAGHLSQ 455
I + G + P L + +S AG +
Sbjct: 133 RWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTASFAGLVPN 175
>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol
metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP:
c.2.1.2
Length = 265
Score = 47.9 bits (115), Expect = 3e-06
Identities = 36/234 (15%), Positives = 63/234 (26%), Gaps = 84/234 (35%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPFAIQA- 244
+ +VTG N+G+G +++ G + + R E + + A Q
Sbjct: 15 KTIIVTGGNRGIGLAFTRAVAAA--GANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCD 72
Query: 245 -------EKT------------ILTNYLGLVR--------------------TCVFLF-- 263
KT L G+ VF
Sbjct: 73 VSNTDIVTKTIQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCR 132
Query: 264 ----PLLR--RHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHV 317
L+ + +V SS + I N ++ +
Sbjct: 133 AVAKLWLQKQQKGSIVVTSSMSSQ---IIN--------------------------QSSL 163
Query: 318 AKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM 371
Y SK + L + E + +NA+ PGYV T+ ++ M
Sbjct: 164 NGSLTQVFYNSSKAACSNLVKGLAA----EWASAGIRVNALSPGYVNTDQTAHM 213
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase;
reductase,hyperthermophIle, structural genomics, PSI,
protei structure initiative; 2.30A {Thermus
thermophilus} SCOP: c.2.1.2
Length = 263
Score = 47.9 bits (115), Expect = 3e-06
Identities = 41/224 (18%), Positives = 64/224 (28%), Gaps = 87/224 (38%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVP------ 239
+ +VTGA G+G + + G + R+++ AEAV L+ A V
Sbjct: 7 KTILVTGAASGIGRAALDLFARE--GASLVAVDREERLLAEAVAALEAEAIAVVADVSDP 64
Query: 240 -----FAIQAEKT-----ILTNYLGLVR--------------------TCVFLF-----P 264
+A + + ++ G+ T FL
Sbjct: 65 KAVEAVFAEALEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGE 124
Query: 265 LLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDS 324
+L +V S AG G
Sbjct: 125 VLEEGGSLVLTGSVAG--------------------------------------LGAFGL 146
Query: 325 A-YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
A YA K+GV L R EL + +N + PG + T M
Sbjct: 147 AHYAAGKLGVVGLARTLAL----ELARKGVRVNVLLPGLIQTPM 186
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain
dehydrogenases/reductases (SDR), X-RAY crystallography,
oxidoreductase; 2.69A {Candida parapsilosis}
Length = 279
Score = 47.9 bits (115), Expect = 3e-06
Identities = 29/234 (12%), Positives = 62/234 (26%), Gaps = 90/234 (38%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKD---RASTVPF-- 240
+VA VTG++ G+G+ + ++ + G + + +A + K +
Sbjct: 35 KVASVTGSSGGIGWAVAEAYAQA--GADVAIWYNSHPADEKAEHLQKTYGVHSKAYKCNI 92
Query: 241 ----AIQA-------------------------------------EKTILTNYLGLVRTC 259
+++ K I + G+
Sbjct: 93 SDPKSVEETISQQEKDFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCS 152
Query: 260 VFLFPLL--RRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHV 317
+ + ++ SS +G + V
Sbjct: 153 HNIGKIFKKNGKGSLIITSSISGKI----------------------------------V 178
Query: 318 AKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM 371
+ Y +K L K E +V N + PGY+ T+++ F
Sbjct: 179 NIPQLQAPYNTAKAACTHLA----KSLAIEWAPFARV-NTISPGYIDTDITDFA 227
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold,
oxidoreductase; HET: BMA; 1.60A {Thermoplasma
acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Length = 264
Score = 47.6 bits (114), Expect = 4e-06
Identities = 37/237 (15%), Positives = 63/237 (26%), Gaps = 83/237 (35%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKD--RASTVPFAI- 242
+V +VTGA+ G+G I + ++ G + + A+ + D V +I
Sbjct: 9 KVVIVTGASMGIGRAIAERFVDE--GSKVIDLSIHDPGEAKYDHIECDVTNPDQVKASID 66
Query: 243 QAEKT-----ILTNYLGLVR--------------------TCVFLF-----PLLRRHA-- 270
K +L N G+ + P + R
Sbjct: 67 HIFKEYGSISVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRDP 126
Query: 271 RVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPD-SAYAVS 329
+VN+SS + SAY S
Sbjct: 127 SIVNISSVQAS-------------------------------------IITKNASAYVTS 149
Query: 330 KIGVNLLTRIYQKKFDCELGNQDKV-INAVHPGYVATNMSSFMGNVNIFDDSSTFNA 385
K V LT+ + + NAV P + T + + + D
Sbjct: 150 KHAVIGLTKSIAL----DYA--PLLRCNAVCPATIDTPLVRKAAELEVGSDPMRIEK 200
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid
synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH
binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus
subtilis} PDB: 3oic_A*
Length = 258
Score = 47.1 bits (113), Expect = 4e-06
Identities = 39/237 (16%), Positives = 66/237 (27%), Gaps = 94/237 (39%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLT-ARDKKKGAEAVQVLKDRASTVPFAIQA 244
+ A+VTG+++G+G L E +GY I + AR KK E + ++ V ++A
Sbjct: 5 KCALVTGSSRGVGKAAAIRLAE--NGYNIVINYARSKKAALETAEEIEKLGVKV-LVVKA 61
Query: 245 ---------------------------------------------EKTILTNYLGLVRTC 259
+ T+ N L+
Sbjct: 62 NVGQPAKIKEMFQQIDETFGRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCA 121
Query: 260 VFLFPLL--RRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHV 317
L+ +V++SS
Sbjct: 122 QEAAKLMEKNGGGHIVSISSLGSIR----------------------------------- 146
Query: 318 AKGWPDSA-YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMGN 373
+ VSK + LTR EL + ++NAV G + T+ N
Sbjct: 147 --YLENYTTVGVSKAALEALTRYLAV----ELSPKQIIVNAVSGGAIDTDALKHFPN 197
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid,
SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo
sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A*
3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A*
3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A*
3ch6_A* 2irw_A* 2ilt_A* ...
Length = 286
Score = 47.3 bits (113), Expect = 4e-06
Identities = 36/234 (15%), Positives = 67/234 (28%), Gaps = 97/234 (41%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPFAIQA- 244
+ +VTGA+KG+G + L + G + +TAR K+ + V + + I
Sbjct: 29 KKVIVTGASKGIGREMAYHLAKM--GAHVVVTARSKETLQKVVSHCLELGAASAHYIAGT 86
Query: 245 --------------------------------------------EKTILTNYLGLVRTCV 260
K++ N+L V V
Sbjct: 87 MEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTV 146
Query: 261 FLFPLLRR-HARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAK 319
P+L++ + +V +SS AG ++ +P
Sbjct: 147 AALPMLKQSNGSIVVVSSLAGKVA----------------------------YPMV---- 174
Query: 320 GWPDSAYAVSKIGVNLLTRIYQKKFDC---ELGNQDKVI--NAVHPGYVATNMS 368
+AY+ SK ++ F E + G + T +
Sbjct: 175 ----AAYSASKFALDGF-------FSSIRKEYSVSRVNVSITLCVLGLIDTETA 217
Score = 36.5 bits (85), Expect = 0.013
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 416 EKTILTNYLGLVRTCVFLFPLLRR-HARVVNLSSSAGHLS 454
K++ N+L V V P+L++ + +V +SS AG ++
Sbjct: 131 RKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKVA 170
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.80A {Bacillus anthracis}
Length = 267
Score = 46.8 bits (112), Expect = 6e-06
Identities = 30/227 (13%), Positives = 60/227 (26%), Gaps = 89/227 (39%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTV-PFAIQA 244
+ A+VTG+ G+G I SL + G + + R ++ E ++ ++ + + A
Sbjct: 11 KTALVTGSTAGIGKAIATSLVAE--GANVLINGRREENVNETIKEIRAQYPDAILQPVVA 68
Query: 245 -----------------------------------------EKTILTNYLGLVRTCVFLF 263
K N + VR
Sbjct: 69 DLGTEQGCQDVIEKYPKVDILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYL 128
Query: 264 PLL--RRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGW 321
+ R+ RV+ ++S A
Sbjct: 129 KKMIERKEGRVIFIASEAA-------------------------------------IMPS 151
Query: 322 PD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
+ + Y+ +K L+R + + +N + PG T
Sbjct: 152 QEMAHYSATKTMQLSLSRSLAE----LTTGTNVTVNTIMPGSTLTEG 194
>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6;
protein-CO-factor complex, structural genomics,
structural G consortium, SGC, oxidoreductase; HET: NAD;
1.84A {Homo sapiens} SCOP: c.2.1.2
Length = 246
Score = 46.3 bits (111), Expect = 7e-06
Identities = 31/220 (14%), Positives = 57/220 (25%), Gaps = 81/220 (36%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKDRAS----TVPFA 241
+V ++T A +G+G + + G + T ++ K E + + T
Sbjct: 7 KVIILTAAAQGIGQAAALAFARE--GAKVIATDINESKLQELEKYPGIQTRVLDVTKKKQ 64
Query: 242 IQA-------------------------------EKTILTNYLGLVRTCVFLFPLLRRH- 269
I + ++ N + P +
Sbjct: 65 IDQFANEVERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQK 124
Query: 270 -ARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPD-SAYA 327
++N+SS A + KG + Y+
Sbjct: 125 SGNIINMSSVASSV------------------------------------KGVVNRCVYS 148
Query: 328 VSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
+K V LT+ + Q N V PG V T
Sbjct: 149 TTKAAVIGLTKSVAA----DFIQQGIRCNCVCPGTVDTPS 184
>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase,
oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei
brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A*
3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A*
3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A*
3jq6_A* ...
Length = 288
Score = 46.5 bits (111), Expect = 9e-06
Identities = 39/225 (17%), Positives = 75/225 (33%), Gaps = 59/225 (26%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAV--QVLKDRASTVPFAIQ 243
AVVTGA K +G I L + GY + + + + A ++ ++ K+R++T Q
Sbjct: 24 PAAVVTGAAKRIGRAIAVKLHQT--GYRVVIHYHNSAEAAVSLADELNKERSNTA-VVCQ 80
Query: 244 A----EKTILTNYLGLVRTCVFLF----------------PLLRRHA------------- 270
A + + ++ +C F PL++
Sbjct: 81 ADLTNSNVLPASCEEIINSCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQV 140
Query: 271 -RV--VNLSSSAGHLSQITNLELKKRLRQLREPVSLRS---LNITKEHPRAHVAKGWPD- 323
+ N + L+ +R + + + +N+ A V +
Sbjct: 141 AELIGTNA-IAPFLLTM----SFAQRQKGTNPNCTSSNLSIVNLCD----AMVDQPCMAF 191
Query: 324 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMS 368
S Y + K + LT+ EL +N V PG ++
Sbjct: 192 SLYNMGKHALVGLTQSAAL----ELAPYGIRVNGVAPGVSLLPVA 232
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp}
Length = 277
Score = 46.4 bits (111), Expect = 9e-06
Identities = 49/287 (17%), Positives = 76/287 (26%), Gaps = 107/287 (37%)
Query: 170 GPLSITGIVNGSVDPSERVAVVTGANKGLGFGIVKSL------------CEQFDGYIYLT 217
GP S+ G + G RVA +TGA +G G + + +
Sbjct: 1 GPGSMAGKLEG------RVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYD 54
Query: 218 ARDKKKGAEAVQVLKD---RASTV------PFAIQA------------------------ 244
+E V++++ R ++
Sbjct: 55 PASPDDLSETVRLVEAANRRIVAAVVDTRDFDRLRKVVDDGVAALGRLDIIVANAGVAAP 114
Query: 245 -----------EKTILTNYLGLVRTCVFLFPLLRRHAR---VVNLSSSAGHLSQITNLEL 290
+ N G T + P + R ++ +SS+AG
Sbjct: 115 QAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISSAAGM--------- 165
Query: 291 KKRLRQLREPVSLRSLNITKEHPRAHVAKGWPD-SAYAVSKIGVNLLTRIYQKKFDCELG 349
K P Y SK V L R + ELG
Sbjct: 166 ----------------------------KMQPFMIHYTASKHAVTGLARAFAA----ELG 193
Query: 350 NQDKVINAVHPGYVATNMSSFMGNVNIFDDSSTFNAFERVISHFLIG 396
+N+VHPG V T M S + T V++ FL
Sbjct: 194 KHSIRVNSVHPGPVNTPMGSGDMVTAVGQAMETNPQLSHVLTPFLPD 240
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; 1.87A
{Rhodopseudomonas palustris}
Length = 252
Score = 46.1 bits (110), Expect = 9e-06
Identities = 28/235 (11%), Positives = 57/235 (24%), Gaps = 91/235 (38%)
Query: 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKD---RAS 236
S+ P V GA +G I K + G+ ++ R+ +K A V ++ R
Sbjct: 2 SLTPRNATVAVIGAGDYIGAEIAKKFAAE--GFTVFAGRRNGEKLAPLVAEIEAAGGRIV 59
Query: 237 TVPF------AIQA----------------------------------EKTILTNYLGLV 256
+ A K
Sbjct: 60 ARSLDARNEDEVTAFLNAADAHAPLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGF 119
Query: 257 RTCVFLFPLL--RRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPR 314
+ L+ ++ ++A
Sbjct: 120 VSGRESARLMLAHGQGKIFFTGATASL--------------------------------- 146
Query: 315 AHVAKGWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQD-KVINAVHPGYVATNM 367
+G +A+A +K G+ + + + EL ++ V + + V T
Sbjct: 147 ----RGGSGFAAFASAKFGLRAVAQSMAR----ELMPKNIHVAHLIIDSGVDTAW 193
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Length = 281
Score = 46.1 bits (110), Expect = 1e-05
Identities = 38/198 (19%), Positives = 70/198 (35%), Gaps = 27/198 (13%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAV-QVLKDRASTVPFAIQA 244
+ AV+TG+ G+G I ++L + G I L V + +S A
Sbjct: 26 KTAVITGSTSGIGLAIARTLAKA--GANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPA 83
Query: 245 EKTILTNYLGLVRTCVFLFPLL---------RRHARVVNLSSSAGHLSQITNLE-----L 290
+ T + ++ F + ++ + NL +
Sbjct: 84 DMTKPSEIADMMAMVADRFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTI 143
Query: 291 KKRLRQLREPVSLRSLNITKEHPRAHVAKGWPD-SAYAVSKIGVNLLTRIYQKKFDCELG 349
+ + +++ R +NI AH P SAY +K G+ LT+ E+
Sbjct: 144 RGAIPPMKKKGWGRIINIAS----AHGLVASPFKSAYVAAKHGIMGLTKTVAL----EVA 195
Query: 350 NQDKVINAVHPGYVATNM 367
+N++ PGYV T +
Sbjct: 196 ESGVTVNSICPGYVLTPL 213
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A
{Uncultured bacterium BIO5}
Length = 262
Score = 46.0 bits (110), Expect = 1e-05
Identities = 44/230 (19%), Positives = 67/230 (29%), Gaps = 92/230 (40%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLK------------- 232
+VAVVTGA++G+G I + L G + LTARD +K + +
Sbjct: 30 QVAVVTGASRGIGAAIARKLGSL--GARVVLTARDVEKLRAVEREIVAAGGEAESHACDL 87
Query: 233 -DRASTVPFAIQAEKT-----ILTNYLGLVR---------------------TCVFLF-- 263
+ FA +L N G+ +L
Sbjct: 88 SHSDAIAAFATGVLAAHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLR 147
Query: 264 ----PLLR-RHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVA 318
++ + ++N+SS AG
Sbjct: 148 AFAPAMIAAKRGHIINISSLAGK------------------------------------- 170
Query: 319 KGWPDSA-YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
D A Y SK G+N L + EL ++ V PG V T
Sbjct: 171 NPVADGAAYTASKWGLNGLMTSAAE----ELRQHQVRVSLVAPGSVRTEF 216
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics,
protein structure initiati nysgrc,oxidoreductase; 2.00A
{Rhizobium etli}
Length = 272
Score = 46.0 bits (110), Expect = 1e-05
Identities = 36/210 (17%), Positives = 72/210 (34%), Gaps = 47/210 (22%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGYI----YLTARDKKKGAEAVQVLKD---RASTVP 239
V +VTG ++G+G + + G+ Y A +++ V + + A
Sbjct: 27 PVVLVTGGSRGIGAAVCRLAAR--QGWRVGVNY--AANREAADAVVAAITESGGEA---- 78
Query: 240 FAIQAEKTILTNYLGLVRTCVFLF-PL---------LRRHARVVNLSSSAGHLSQI--TN 287
AI + + + F L + RV +S + ++ N
Sbjct: 79 VAIPGDVGNAADIAAMFSAVDRQFGRLDGLVNNAGIVDYPQRVDEMS--VERIERMLRVN 136
Query: 288 L--------ELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWP--DSAYAVSKIGVNLLT 337
+ E +R+ +L +N++ G YA SK ++ T
Sbjct: 137 VTGSILCAAEAVRRMSRLYSGQGGAIVNVSS----MAAILGSATQYVDYAASKAAIDTFT 192
Query: 338 RIYQKKFDCELGNQDKVINAVHPGYVATNM 367
+ E+ + +NAV PG + T++
Sbjct: 193 IGLAR----EVAAEGIRVNAVRPGIIETDL 218
>1xhl_A Short-chain dehydrogenase/reductase family member putative
tropinone reductase-II...; parallel beta-sheet of seven
strands in the order 3214567; HET: NDP TNE; 2.40A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 297
Score = 46.1 bits (110), Expect = 1e-05
Identities = 35/240 (14%), Positives = 66/240 (27%), Gaps = 94/240 (39%)
Query: 185 SERVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKD--RASTVPFA 241
S + ++TG++ G+G ++ G + +T R++ + E Q + + A
Sbjct: 25 SGKSVIITGSSNGIGRSAAVIFAKE--GAQVTITGRNEDRLEETKQQILKAGVPAEKINA 82
Query: 242 IQA-----------------------------------------------EKTILTNYLG 254
+ A +KT N+
Sbjct: 83 VVADVTEASGQDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQA 142
Query: 255 LVRTCVFLFP-LLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHP 313
++ L++ +VN+SS
Sbjct: 143 VIEMTQKTKEHLIKTKGEIVNVSSIVAGP------------------------------- 171
Query: 314 RAHVAKGWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG 372
+ YA +K ++ TR +L +N+V PG VAT MG
Sbjct: 172 -----QAHSGYPYYACAKAALDQYTRCTAI----DLIQHGVRVNSVSPGAVATGFMGAMG 222
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 1.75A {Mycobacterium smegmatis}
Length = 262
Score = 45.6 bits (109), Expect = 1e-05
Identities = 38/229 (16%), Positives = 54/229 (23%), Gaps = 89/229 (38%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPFAIQAE 245
R VVTG KG+G GI G + + R V L S +Q +
Sbjct: 11 RSVVVTGGTKGIGRGIATVFARA--GANVAVAGRSTADIDACVADLDQLGSGKVIGVQTD 68
Query: 246 KT--------------------ILTNYLGLVR--------------------TCVFLF-- 263
+ ++ G+ F
Sbjct: 69 VSDRAQCDALAGRAVEEFGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQ 128
Query: 264 ----PLLR-RHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVA 318
L+ RVV SS G ++
Sbjct: 129 ACLDALIASGSGRVVLTSSITGPITG----------------------YP---------- 156
Query: 319 KGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
GW S Y +K R EL +NA+ PG + T
Sbjct: 157 -GW--SHYGATKAAQLGFMRTAAI----ELAPHKITVNAIMPGNIMTEG 198
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR,
hydroxysteroid dehydrogenase, structural genomics, PSI;
HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP:
c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Length = 260
Score = 45.6 bits (109), Expect = 1e-05
Identities = 41/236 (17%), Positives = 71/236 (30%), Gaps = 100/236 (42%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKDRASTVP------ 239
+VA+V+G +G+G V+++ + G + ++G L D A V
Sbjct: 8 KVALVSGGARGMGASHVRAMVAE--GAKVVFGDILDEEGKAMAAELADAARYVHLDVTQP 65
Query: 240 --------FAIQA---------------------------EKTILTNYLGLVRTCVFL-- 262
A+ A ++ + N G VFL
Sbjct: 66 AQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTG-----VFLGI 120
Query: 263 ---FPLLRRHAR--VVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHV 317
++ R ++N+SS G
Sbjct: 121 RAVVKPMKEAGRGSIINISSIEGLA----------------------------------- 145
Query: 318 AKGWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKV-INAVHPGYVATNMSSFM 371
G Y +K V LT+ ELG + +N++HPG V T M+ ++
Sbjct: 146 --GTVACHGYTATKFAVRGLTKSTAL----ELG-PSGIRVNSIHPGLVKTPMTDWV 194
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; HET: MES; 1.65A {Caenorhabditis
elegans} SCOP: c.2.1.2
Length = 236
Score = 45.0 bits (107), Expect = 2e-05
Identities = 23/221 (10%), Positives = 44/221 (19%), Gaps = 82/221 (37%)
Query: 187 RVAVVTGANKGLGFGIVKSL--------------------CEQFDGYIYLTARDKKKGAE 226
+V G LG I++ DG T +++ +
Sbjct: 4 GKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQADSNILVDGNKNWTEQEQSILEQ 63
Query: 227 AVQVLK-----------------DRASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRH 269
L+ +S A+ I + L+
Sbjct: 64 TASSLQGSQVDGVFCVAGGWAGGSASSKDFVK-NADLMIKQSVWSSAIAAKLATTHLKPG 122
Query: 270 ARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPD-SAYAV 328
+ ++A P Y +
Sbjct: 123 GLLQLTGAAAAM-------------------------------------GPTPSMIGYGM 145
Query: 329 SKIGVNLLTRIYQKKFDCELGNQDKVI--NAVHPGYVATNM 367
+K V+ LT + + P + T M
Sbjct: 146 AKAAVHHLTSS----LAAKDSGLPDNSAVLTIMPVTLDTPM 182
Score = 27.7 bits (62), Expect = 7.5
Identities = 3/37 (8%), Positives = 9/37 (24%)
Query: 416 EKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGH 452
+ I + L+ + ++A
Sbjct: 98 DLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAM 134
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, NAD,
tuberculosis; HET: NAD; 2.00A {Mycobacterium avium}
Length = 287
Score = 45.7 bits (109), Expect = 2e-05
Identities = 40/234 (17%), Positives = 66/234 (28%), Gaps = 82/234 (35%)
Query: 187 RVAVVTGANKGLGFGIVKSL------------CEQFDGYIYL--TARDKKKGAEAVQVLK 232
+V +VTG +G G L C + Y T+RD ++ V+
Sbjct: 11 KVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG 70
Query: 233 DRASTVPF------AIQA---------------------------------EKTILTNYL 253
+A T A+ +++
Sbjct: 71 RKAYTAEVDVRDRAAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFV 130
Query: 254 GLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHP 313
G++ T P L A ++ S AG L + P
Sbjct: 131 GVINTVHAALPYLTSGASIITTGSVAG-------------------------LIAAAQPP 165
Query: 314 RAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
A +G + Y+ +K V+ T +L Q N +HP V T+M
Sbjct: 166 GAGGPQGPGGAGYSYAKQLVDSYTLQLAA----QLAPQSIRANVIHPTNVNTDM 215
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol,
oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila
lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A*
1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Length = 254
Score = 45.0 bits (107), Expect = 2e-05
Identities = 24/226 (10%), Positives = 45/226 (19%), Gaps = 88/226 (38%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPFAIQA- 244
+ + A G+G + L ++ ++ + ++
Sbjct: 6 KNVIFVAALGGIGLDTSRELVKR--NLKNFVILDRVENPTALAELKAINPKVNITFHTYD 63
Query: 245 -------------------------------------EKTILTNYLGLVRTCVFLFPLLR 267
E+TI N+ GLV T +
Sbjct: 64 VTVPVAESKKLLKKIFDQLKTVDILINGAGILDDHQIERTIAINFTGLVNTTTAILDFWD 123
Query: 268 -----RHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWP 322
+ N+ S G
Sbjct: 124 KRKGGPGGIIANICSVTGF-------------------------------------NAIH 146
Query: 323 D-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
Y+ SK V T K +++PG T +
Sbjct: 147 QVPVYSASKAAVVSFTNSLAK----LAPITGVTAYSINPGITRTPL 188
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain
dehydrogenase/reductase, bIle acid catabolism,
oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli}
SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Length = 255
Score = 45.2 bits (108), Expect = 2e-05
Identities = 27/228 (11%), Positives = 58/228 (25%), Gaps = 90/228 (39%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKD---RASTVPF-- 240
+ A++TGA G+G I + G + ++ + V ++ +A
Sbjct: 12 KCAIITGAGAGIGKEIAITFATA--GASVVVSDINADAANHVVDEIQQLGGQAFACRCDI 69
Query: 241 ----AIQA----------------------------------EKTILTNYLGLVRTCVFL 262
+ A + N +
Sbjct: 70 TSEQELSALADFAISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLV 129
Query: 263 FPLL--RRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKG 320
P + ++ ++S A
Sbjct: 130 APEMEKNGGGVILTITSMAAEN-------------------------------------K 152
Query: 321 WPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
+ ++YA SK + L R +LG ++ +N + PG + T+
Sbjct: 153 NINMTSYASSKAAASHLVRNMAF----DLGEKNIRVNGIAPGAILTDA 196
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural
genomics center for infectious disease, S brucellosis;
2.20A {Brucella melitensis biovar abortus}
Length = 261
Score = 44.8 bits (107), Expect = 2e-05
Identities = 41/217 (18%), Positives = 76/217 (35%), Gaps = 54/217 (24%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKDRASTVPFAIQAE 245
+VA++TGA G G G+ K + G + + RDK + D A A+ A+
Sbjct: 10 KVALITGAGSGFGEGMAKRFAKG--GAKVVIVDRDKAGAERVAGEIGDAA----LAVAAD 63
Query: 246 KTILTNYLGLVRTCVFLFPLLRRHARV---VN---LSSSAGHLSQIT----------NLE 289
+ + V + + +V VN + + + N+
Sbjct: 64 ISKEADVDAAVEAAL------SKFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVR 117
Query: 290 -----LKKRLRQLRE----PVSLRSLNITKEHPRAHVA--KGWPD-SAYAVSKIGVNLLT 337
K + +E LN+ A + P+ + Y +K V +T
Sbjct: 118 GVYLMTSKLIPHFKENGAKGQECVILNV------ASTGAGRPRPNLAWYNATKGWVVSVT 171
Query: 338 RIYQKKFDCELGNQDKV-INAVHPGYVATNM-SSFMG 372
+ EL K+ + A++P T + ++FMG
Sbjct: 172 KALAI----ELA-PAKIRVVALNPVAGETPLLTTFMG 203
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structure initiative;
1.90A {Novosphingobium aromaticivorans DSM12444}
Length = 319
Score = 45.1 bits (107), Expect = 3e-05
Identities = 34/237 (14%), Positives = 62/237 (26%), Gaps = 99/237 (41%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLK------------- 232
R A VTG G+G G+V+ L Q G + + + +A+ L+
Sbjct: 9 RTAFVTGGANGVGIGLVRQLLNQ--GCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQL 66
Query: 233 ---DRASTVPFAIQA------------------------------EKTILTNYLGLVRTC 259
R A + + + N G+V
Sbjct: 67 DVASREGFKMAADEVEARFGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGV 126
Query: 260 VFLFPLLRRHAR--------VVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKE 311
P + + VVN +S A L+ +
Sbjct: 127 TTFVPRMVERVKAGEQKGGHVVNTASMAAFLAAGSP------------------------ 162
Query: 312 HPRAHVAKGWPDSAYAVSKIGVNLLTR-IYQKKFDCELGNQDKVINAVHPGYVATNM 367
Y +K V L+ ++ L + ++ + PG V + +
Sbjct: 163 ------------GIYNTTKFAVRGLSESLHY-----SLLKYEIGVSVLCPGLVKSYI 202
>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A
{Chlorobium tepidum} SCOP: c.2.1.2
Length = 244
Score = 44.5 bits (106), Expect = 3e-05
Identities = 34/237 (14%), Positives = 60/237 (25%), Gaps = 94/237 (39%)
Query: 186 ERVAVVTGANKGLGFGIVKSLCEQ------FDGYIYLTARDKKKGAEAVQVLKD---RAS 236
+ + ++TGA KG+G I F+ + L++R + +
Sbjct: 2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTD 61
Query: 237 TVPF------AIQA-----------------------------------EKTILTNYLGL 255
T+ ++ + T+ TN G
Sbjct: 62 TITADISDMADVRRLTTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGT 121
Query: 256 VRTCVFLFPLL--RRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHP 313
LF L+ + + ++S A
Sbjct: 122 FFLTQALFALMERQHSGHIFFITSVAAT-------------------------------- 149
Query: 314 RAHVAKGWPDSA-YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSS 369
K + S+ Y +SK G L + + I V PG V T M
Sbjct: 150 -----KAFRHSSIYCMSKFGQRGLVETMRL----YARKCNVRITDVQPGAVYTPMWG 197
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase,
short chain dehydrogenase/oxidoreductase, SD comamonas
testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A*
3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Length = 281
Score = 44.5 bits (106), Expect = 3e-05
Identities = 38/256 (14%), Positives = 57/256 (22%), Gaps = 95/256 (37%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKDRASTV------- 238
VA++TG GLG +V + G + + + ++ E A V
Sbjct: 6 EVALITGGASGLGRALVDRFVAE--GARVAVLDKSAERLRELEVAHGGNAVGVVGDVRSL 63
Query: 239 -------------------------------PFAIQAE--------KTILTNYLGLVRTC 259
A E N G +
Sbjct: 64 QDQKRAAERCLAAFGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAV 123
Query: 260 VFLFPLLRRH-ARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVA 318
P L VV S+AG
Sbjct: 124 KACLPALVSSRGSVVFTISNAGF------------------------------------- 146
Query: 319 KGWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKV-INAVHPGYVATNMSSFMGNVNI 376
Y +K V L R EL V +N V PG + T++
Sbjct: 147 YPNGGGPLYTATKHAVVGLVRQMAF----ELA--PHVRVNGVAPGGMNTDLRGPSSLGLS 200
Query: 377 FDDSSTFNAFERVISH 392
S+ + + S
Sbjct: 201 EQSISSVPLADMLKSV 216
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics
center for infectious disease, ssgcid, oxidoreductase,
structural genomics; 2.20A {Brucella melitensis}
Length = 256
Score = 44.4 bits (106), Expect = 3e-05
Identities = 37/228 (16%), Positives = 59/228 (25%), Gaps = 90/228 (39%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLK------------- 232
VA+VTGA G+G I + + G + +T + ++
Sbjct: 13 AVAIVTGAAAGIGRAIAGTFAKA--GASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNV 70
Query: 233 -DRASTVPFAIQAEKT-----ILTNYLGLVR-------------------TCVFLF---- 263
D A +L N G +F
Sbjct: 71 TDEQHREAVIKAALDQFGKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLA 130
Query: 264 --PLLR-RHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKG 320
+ + ++N+SS AG
Sbjct: 131 APHMQKAGGGAILNISSMAG-------------------------------------ENT 153
Query: 321 WPDSA-YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
A Y SK VN LTR ++G +NA+ PG + T+
Sbjct: 154 NVRMASYGSSKAAVNHLTRNIAF----DVGPMGIRVNAIAPGAIKTDA 197
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain
dehydrogenase, ketone BODY, beta hydroxybutyrate,
oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi}
SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A*
2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*
Length = 260
Score = 44.1 bits (105), Expect = 4e-05
Identities = 46/198 (23%), Positives = 71/198 (35%), Gaps = 27/198 (13%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLT-ARDKKKGAEAVQVLKDRASTVPFAIQA 244
+VAVVTG+ G+G GI +L Q G I L D + + L + A
Sbjct: 5 KVAVVTGSTSGIGLGIATALAAQ--GADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGA 62
Query: 245 EKTILTNYLGLVRTCVFLFPLL---------RRHARVVNLSSSAGHLSQITNLE-----L 290
+ + GLV V + + A + + + NL
Sbjct: 63 DLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGT 122
Query: 291 KKRLRQLREPVSLRSLNITKEHPRAHVAKGWPD-SAYAVSKIGVNLLTRIYQKKFDCELG 349
L +++ R +NI AH + SAY +K GV T++ E
Sbjct: 123 AAALPHMKKQGFGRIINIAS----AHGLVASANKSAYVAAKHGVVGFTKVTAL----ETA 174
Query: 350 NQDKVINAVHPGYVATNM 367
Q NA+ PG+V T +
Sbjct: 175 GQGITANAICPGWVRTPL 192
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD
binding; 2.30A {Thermoplasma volcanium}
Length = 269
Score = 44.1 bits (105), Expect = 4e-05
Identities = 36/225 (16%), Positives = 62/225 (27%), Gaps = 94/225 (41%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLK-------DRASTV 238
+VA+VTG + G+G +V +L G + + D+K K + V
Sbjct: 15 KVAIVTGGSSGIGLAVVDALVRY--GAKVVSVSLDEKSDVNVSDHFKIDVTNEEEVKEAV 72
Query: 239 PFAIQA---------------------------EKTILTNYLGLVRTCVFL-----FPLL 266
+ + I N G +L P++
Sbjct: 73 EKTTKKYGRIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNG-----SYLMAKYTIPVM 127
Query: 267 RRH--ARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPD- 323
++N++S + +
Sbjct: 128 LAIGHGSIINIASVQSY-------------------------------------AATKNA 150
Query: 324 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKV-INAVHPGYVATNM 367
+AY SK + LTR + K+ NAV PG + T M
Sbjct: 151 AAYVTSKHALLGLTRSVAI----DYA--PKIRCNAVCPGTIMTPM 189
>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain
dehydrogenase/reductase, trypanosomatid, pterin salvage,
drug resistance; HET: NAP FE1; 2.61A {Leishmania major}
SCOP: c.2.1.2
Length = 328
Score = 44.4 bits (105), Expect = 5e-05
Identities = 48/272 (17%), Positives = 69/272 (25%), Gaps = 71/272 (26%)
Query: 155 HPPSGASMWSRQGVDGPLSITGIVNGSVDPSE-------RVAVVTGANKGLGFGIVKSLC 207
H S + + +G V VA+VTGA K LG I + L
Sbjct: 8 HHHSSGLVPRGSHMGSSHHHHHHSSGLVPRGSHMTAPTVPVALVTGAAKRLGRSIAEGLH 67
Query: 208 EQFDGY-IYLTARDKKKGAEA-VQVLKDRASTVPFAIQA-----------------EKTI 248
+ GY + L A A L R +QA T+
Sbjct: 68 AE--GYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPVTL 125
Query: 249 LTNYLGLVRTCVFLF----------------PLLR------RHARVVNLSSSAGHLSQI- 285
T LV C + PLLR +
Sbjct: 126 FTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFG 185
Query: 286 TNL--------ELKKRLRQLREPVSLRS---LNITKEHPRAHVAKGWPDSA-YAVSKIGV 333
+N R+ + +N+ A + Y ++K +
Sbjct: 186 SNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVD----AMTNQPLLGYTIYTMAKGAL 241
Query: 334 NLLTRIYQKKFDCELGNQDKVINAVHPGYVAT 365
LTR EL +N V PG
Sbjct: 242 EGLTRSAAL----ELAPLQIRVNGVGPGLSVL 269
>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain
dehydrogenase, methotrexate resistance, oxidoreductase;
HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2
PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A*
2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*
Length = 291
Score = 43.9 bits (104), Expect = 5e-05
Identities = 45/237 (18%), Positives = 64/237 (27%), Gaps = 64/237 (27%)
Query: 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEA-VQVLKDRASTVPF 240
P+ VA+VTGA K LG I + L +GY + L A A L R
Sbjct: 6 APTVPVALVTGAAKRLGRSIAEGLHA--EGYAVCLHYHRSAAEANALSATLNARRPNSAI 63
Query: 241 AIQA-----------------EKTILTNYLGLVRTCVFLF----------------PLLR 267
+QA T+ T LV C + PLLR
Sbjct: 64 TVQADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLR 123
Query: 268 ------RHARVVNLSSSAGHLSQI-TNL--------ELKKRLRQLREPVSLRS---LNIT 309
+ +N R+ + +N+
Sbjct: 124 NDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMV 183
Query: 310 KEHPRAHVAKGWPDSA-YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVAT 365
A + Y ++K + LTR EL +N V PG
Sbjct: 184 D----AMTNQPLLGYTIYTMAKGALEGLTRSAAL----ELAPLQIRVNGVGPGLSVL 232
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain
dehydrogenase, HUM structural genomics, structural
genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens}
SCOP: c.2.1.2
Length = 272
Score = 43.8 bits (104), Expect = 7e-05
Identities = 39/239 (16%), Positives = 58/239 (24%), Gaps = 104/239 (43%)
Query: 185 SERVAVVTGANKGLGFGIVKSLCEQFDGY---IYLTARDKKKGAEAVQVLK--------- 232
+ + ++TGA G+G + +F + L +K E K
Sbjct: 30 TGEIVLITGAGHGIG----RLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTF 85
Query: 233 -----DRASTVPFAIQA------------------------------EKTILTNYLGLVR 257
+R A + EKT N L
Sbjct: 86 VVDCSNREDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFW 145
Query: 258 TC-VFLFPLL--RRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPR 314
T FL P + H +V ++S+AGH+S P
Sbjct: 146 TTKAFL-PAMTKNNHGHIVTVASAAGHVSV----------------------------PF 176
Query: 315 AHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDC---EL--GNQDKV-INAVHPGYVATNM 367
AY SK EL V + P +V T
Sbjct: 177 L--------LAYCSSKFAAVGFH-------KTLTDELAALQITGVKTTCLCPNFVNTGF 220
Score = 35.7 bits (83), Expect = 0.023
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 416 EKTILTNYLGLVRTC-VFLFPLL--RRHARVVNLSSSAGHLS 454
EKT N L T FL P + H +V ++S+AGH+S
Sbjct: 133 EKTFEVNVLAHFWTTKAFL-PAMTKNNHGHIVTVASAAGHVS 173
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid,
SBRI, UW, emerald biostructures, structu genomics; 2.50A
{Mycobacterium thermoresistibile}
Length = 285
Score = 43.4 bits (103), Expect = 7e-05
Identities = 32/210 (15%), Positives = 67/210 (31%), Gaps = 45/210 (21%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVP------ 239
+ ++G ++G+G I K + DG + L A+ + + + A +
Sbjct: 10 KTMFISGGSRGIGLAIAKRVAA--DGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQA 67
Query: 240 FAIQAEKTILTNYLGLVRTCVFLFPLLRRHARV---VNLSSSAGHLSQITNLELKKR--- 293
I + V V + + VN ++SA +L I + LK+
Sbjct: 68 LPIVGDIRDGDAVAAAVAKTV------EQFGGIDICVN-NASAINLGSIEEVPLKRFDLM 120
Query: 294 ---------------LRQLREPVSLRSLNITKEHPRAHVAKGWP-DSAYAVSKIGVNLLT 337
+ ++ + L ++ P + W + Y ++K G+ L
Sbjct: 121 NGIQVRGTYAVSQSCIPHMKGRDNPHILTLS---PPIRLEPKWLRPTPYMMAKYGMTLCA 177
Query: 338 RIYQKKFDCELGNQDKVINAVHPGYVATNM 367
+ EL + N + P
Sbjct: 178 LGIAE----ELRDAGIASNTLWPRTTVATA 203
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum
pernix}
Length = 260
Score = 43.3 bits (103), Expect = 8e-05
Identities = 31/230 (13%), Positives = 56/230 (24%), Gaps = 92/230 (40%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTV-PFAIQA 244
++AVVT + GLGF L G + L +R+++K A + S +
Sbjct: 8 KLAVVTAGSSGLGFASALELARN--GARLLLFSRNREKLEAAASRIASLVSGAQVDIVAG 65
Query: 245 --------------------------------------------EKTILTNYLGLVRTCV 260
+++ V
Sbjct: 66 DIREPGDIDRLFEKARDLGGADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGR 125
Query: 261 FLFPLL--RRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVA 318
+ + R+V + S P +L
Sbjct: 126 RAAEQMVEKGWGRMVYIGSVTL-----------------LRPWQDLAL------------ 156
Query: 319 KGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKV-INAVHPGYVATNM 367
+ ++ V + R EL V +NAV P + T+
Sbjct: 157 -------SNIMRLPVIGVVRTLAL----ELA-PHGVTVNAVLPSLILTDR 194
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics,
midwest center for structural genomics, protein
structure initiative; 2.00A {Streptomyces avermitilis}
Length = 281
Score = 43.4 bits (103), Expect = 9e-05
Identities = 30/143 (20%), Positives = 42/143 (29%), Gaps = 46/143 (32%)
Query: 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYI-YLTARDKKKGAEAVQVLKDRASTVPF--- 240
S +V +VTGA+ G G I ++ G TAR + + V DRA +
Sbjct: 4 SAKVWLVTGASSGFGRAIAEAAVAA--GDTVIGTARRTEALDDLVAAYPDRAEAISLDVT 61
Query: 241 -------AI-------------------------------QAEKTILTNYLGLVRTCVFL 262
+ + G R L
Sbjct: 62 DGERIDVVAADVLARYGRVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRAL 121
Query: 263 FPLLR--RHARVVNLSSSAGHLS 283
P +R VVN+SS G LS
Sbjct: 122 LPQMRERGSGSVVNISSFGGQLS 144
Score = 29.2 bits (66), Expect = 2.6
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 414 QAEKTILTNYLGLVRTCVFLFPLLR--RHARVVNLSSSAGHLS 454
+ + G R L P +R VVN+SS G LS
Sbjct: 102 ELRDLFELHVFGPARLTRALLPQMRERGSGSVVNISSFGGQLS 144
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 249
Score = 42.9 bits (102), Expect = 9e-05
Identities = 25/213 (11%), Positives = 63/213 (29%), Gaps = 74/213 (34%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLK--DRASTVPFAIQ 243
+ +V A++G+G + L ++ G + + AR+++ + D + +
Sbjct: 20 KGVLVLAASRGIGRAVADVLSQE--GAEVTICARNEELLKRSGHRYVVCDLRKDLDLLFE 77
Query: 244 A---------------------------EKTILTNYLGLVRTCVFLFPLL--RRHARVVN 274
++ I + +L +++ P + + R+V
Sbjct: 78 KVKEVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVA 137
Query: 275 LSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVN 334
++S + +S I NL +++ +
Sbjct: 138 ITSFSV-ISPIENLYT-----------------------------------SNSARMALT 161
Query: 335 LLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
+ E+ +N V PG+ T
Sbjct: 162 GFLKTLSF----EVAPYGITVNCVAPGWTETER 190
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW
YORK structural genomi research consortium, nysgrc,
oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Length = 280
Score = 42.9 bits (102), Expect = 1e-04
Identities = 40/235 (17%), Positives = 66/235 (28%), Gaps = 101/235 (42%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKD---RASTVP--- 239
++A+VTGA+ G+G + G + +TAR+ AE + A+ +
Sbjct: 9 KIAIVTGASSGIGRAAALLFARE--GAKVVVTARNGNALAELTDEIAGGGGEAAALAGDV 66
Query: 240 -----------FAIQA----------------------------EKTILTNYLGLVRTCV 260
A++ +T+ TN
Sbjct: 67 GDEALHEALVELAVRRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTS-----A 121
Query: 261 FL-----FPLLRRH--ARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHP 313
FL P + + SS GH +
Sbjct: 122 FLAAKYQVPAIAALGGGSLTFTSSFVGHTA------------------------------ 151
Query: 314 RAHVAKGWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
G+ + YA SK G+ L + ELG + +NA+ PG T
Sbjct: 152 ------GFAGVAPYAASKAGLIGLVQALAV----ELGARGIRVNALLPGGTDTPA 196
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin,
rossman fold, chorismate metabolism, short-CHA
oxidoreductase, tetramer; 2.00A {Escherichia coli}
Length = 250
Score = 42.9 bits (102), Expect = 1e-04
Identities = 36/222 (16%), Positives = 55/222 (24%), Gaps = 79/222 (35%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLK----DRASTVPFA 241
+ VTGA KG+G+ + E G + + + D A
Sbjct: 8 KNVWVTGAGKGIGYATALAFVEA--GAKVTGFDQAFTQEQYPFATEVMDVADAAQVAQVC 65
Query: 242 IQAEKT-----ILTNYLGLVR--------------------TCVFLFP-------LLRRH 269
+ L N G++R F +R
Sbjct: 66 QRLLAETERLDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQRG 125
Query: 270 ARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVS 329
+V ++S A H PR ++ AY S
Sbjct: 126 GAIVTVASDAAH------------------------------TPRIGMS------AYGAS 149
Query: 330 KIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM 371
K + L EL N V PG T+M +
Sbjct: 150 KAALKSLALSVGL----ELAGSGVRCNVVSPGSTDTDMQRTL 187
>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET:
NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A
Length = 255
Score = 42.6 bits (101), Expect = 1e-04
Identities = 51/201 (25%), Positives = 77/201 (38%), Gaps = 37/201 (18%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQ--------FDGYIYLTARDKKKGAEAVQV---LKDRA 235
+ A+VTG+ G+G GI + L F A + G +AV L D A
Sbjct: 5 KTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDPAPALAEIARHGVKAVHHPADLSDVA 64
Query: 236 STVPFAIQAEKT-----ILTNYLGLVRTCVFL-FPLLRRHARV--VNLSSSAGHLSQITN 287
AE+ IL N G+ FPL ++ +NLS+ H +++
Sbjct: 65 QIEALFALAEREFGGVDILVNNAGIQHVAPVEQFPL-ESWDKIIALNLSA-VFHGTRLA- 121
Query: 288 LELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPD-SAYAVSKIGVNLLTRIYQKKFDC 346
L +R R +NI H G +AY +K GV LT++
Sbjct: 122 ------LPGMRARNWGRIINIAS----VHGLVGSTGKAAYVAAKHGVVGLTKVVGL---- 167
Query: 347 ELGNQDKVINAVHPGYVATNM 367
E + NA+ PG+V T +
Sbjct: 168 ETATSNVTCNAICPGWVLTPL 188
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann
fold, short-chain dehydrogenase, oxidoreductase; 1.22A
{Comamonas testosteroni} SCOP: c.2.1.2
Length = 253
Score = 42.5 bits (101), Expect = 1e-04
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 7/51 (13%)
Query: 320 GWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVI--NAVHPGYVATNM 367
+ Y+ SK V+ LTR Q I N++HP + T M
Sbjct: 144 PIEQYAGYSASKAAVSALTRAAA----LSCRKQGYAIRVNSIHPDGIYTPM 190
Score = 34.4 bits (80), Expect = 0.064
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKDRASTVP 239
+VA+VTG G+G +VK L + G + + ++ G + L +R+ V
Sbjct: 7 KVALVTGGASGVGLEVVKLLLGE--GAKVAFSDINEAAGQQLAAELGERSMFVR 58
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain
dehydrogenase, beta- oxidation, NADP, oxidoreductase;
HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB:
1w73_A* 1w8d_A*
Length = 302
Score = 42.6 bits (101), Expect = 1e-04
Identities = 37/212 (17%), Positives = 64/212 (30%), Gaps = 55/212 (25%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKD----RASTVPFA 241
+VA +TG GLG G+ L G + +R + + + +
Sbjct: 27 KVAFITGGGTGLGKGMTTLLSSL--GAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCD 84
Query: 242 IQAEKTILTNYLGLVRTCVFLFPLLRRHARV--------VNLSSSAGHLS-----QITNL 288
++ + V + + N S LS IT++
Sbjct: 85 VRDPDMVQ----NTVSELI------KVAGHPNIVINNAAGNFISPTERLSPNAWKTITDI 134
Query: 289 ELK----------KRLRQLREPVSLRSLNIT---KEHPRAHVAKGWPDSAYAVSKIGVNL 335
L K+L + ++ + L+IT E V A +K GV
Sbjct: 135 VLNGTAFVTLEIGKQLIKAQKGAAF--LSITTIYAETGSGFVV------PSASAKAGVEA 186
Query: 336 LTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
++ K E G N + PG + T
Sbjct: 187 MS----KSLAAEWGKYGMRFNVIQPGPIKTKG 214
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG
structure initiative, PSI, joint center for structural
GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 267
Score = 42.5 bits (101), Expect = 1e-04
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKDRASTVPFAIQA 244
RVA+VTG ++GLGFGI + L E G + + +R+ ++ +EA Q L ++ A +
Sbjct: 22 RVALVTGGSRGLGFGIAQGLAEA--GCSVVVASRNLEEASEAAQKLTEKYGVETMAFRC 78
Score = 37.9 bits (89), Expect = 0.005
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 324 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
SAYA SK GV LT K E G +N + PG+ T M
Sbjct: 170 SAYAASKGGVASLT----KALAKEWGRYGIRVNVIAPGWYRTKM 209
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol,
chiral alcohol, oxidoreductase; HET: NAD; 2.00A
{Agrobacterium tumefaciens}
Length = 263
Score = 42.5 bits (101), Expect = 2e-04
Identities = 43/227 (18%), Positives = 68/227 (29%), Gaps = 89/227 (39%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPF----- 240
R A+VTG +KG+G I ++L + G + + D V L++ V
Sbjct: 13 RKAIVTGGSKGIGAAIARALDKA--GATVAIADLDVMAAQAVVAGLENGGFAVEVDVTKR 70
Query: 241 -AIQA--EKT--------ILTNYLGLVR--------------------TCVFL------- 262
++ A +K +L G+ VFL
Sbjct: 71 ASVDAAMQKAIDALGGFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACR 130
Query: 263 -FPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGW 321
F +VN +S A G
Sbjct: 131 HFLASNTKGVIVNTASLAAK-------------------------------------VGA 153
Query: 322 PDSA-YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
P A Y+ SK V T+ + E+ ++ +N V PG+V T M
Sbjct: 154 PLLAHYSASKFAVFGWTQALAR----EMAPKNIRVNCVCPGFVKTAM 196
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structur initiative;
1.90A {Vibrio parahaemolyticus}
Length = 230
Score = 42.2 bits (100), Expect = 2e-04
Identities = 22/134 (16%), Positives = 37/134 (27%), Gaps = 42/134 (31%)
Query: 188 VAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPF------ 240
+ V+TGA+ GLG + K + G YLT R + K + L +
Sbjct: 3 LIVITGASSGLGAELAKLYDAE--GKATYLTGRSESKLSTVTNCLSNNVGYRARDLASHQ 60
Query: 241 AIQA--------------------------------EKTILTNYLGLVRTCVFLFP-LLR 267
++ + I N + L
Sbjct: 61 EVEQLFEQLDSIPSTVVHSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKD 120
Query: 268 RHARVVNLSSSAGH 281
+ VV + S+A
Sbjct: 121 QPVNVVMIMSTAAQ 134
Score = 31.0 bits (71), Expect = 0.57
Identities = 7/38 (18%), Positives = 12/38 (31%), Gaps = 1/38 (2%)
Query: 416 EKTILTNYLGLVRTCVFLFP-LLRRHARVVNLSSSAGH 452
+ I N + L + VV + S+A
Sbjct: 97 QTLIENNLSSAINVLRELVKRYKDQPVNVVMIMSTAAQ 134
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology,
NEW YORK structural genomi research consortium, nysgrc;
2.00A {Rhizobium etli}
Length = 277
Score = 42.5 bits (101), Expect = 2e-04
Identities = 30/226 (13%), Positives = 63/226 (27%), Gaps = 88/226 (38%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKDRAS------TVP 239
RV +VTG G+G + + G Y+ + ++ + +A +
Sbjct: 28 RVCIVTGGGSGIGRATAELFAKN--GAYVVVADVNEDAAVRVANEIGSKAFGVRVDVSSA 85
Query: 240 FAIQA-----------------------------------EKTILTNYLGLVRTCVFLFP 264
++ ++ + N G+ ++ P
Sbjct: 86 KDAESMVEKTTAKWGRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIP 145
Query: 265 LLRRH--ARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWP 322
++RR+ ++N +S
Sbjct: 146 VMRRNGGGSIINTTSYTAT-------------------------------------SAIA 168
Query: 323 D-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
D +AY SK ++ LTR + + +NAV PG + +
Sbjct: 169 DRTAYVASKGAISSLTRAMAM----DHAKEGIRVNAVAPGTIDSPY 210
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.95A {Mycobacterium avium}
Length = 299
Score = 42.2 bits (100), Expect = 2e-04
Identities = 51/299 (17%), Positives = 76/299 (25%), Gaps = 108/299 (36%)
Query: 162 MWSRQG-VDGPLSITGIVNGSVDPSERVAVVTGANKGLGFG------------IVKSLCE 208
M + + GP S+ G V G +VA +TGA +G G I +C+
Sbjct: 9 MGTLEAQTQGPGSMAGKVEG------KVAFITGAARGQGRSHAITLAREGADIIAIDVCK 62
Query: 209 QFDGYIYLTARD----------KKKGAEAVQVLKD--RASTVPFAIQA------------ 244
Q DG + + G + D + A+
Sbjct: 63 QLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDFDAMQAAVDDGVTQLGRLDIVL 122
Query: 245 --------------------EKTILTNYLGLVRTCVFLFPLL---RRHARVVNLSSSAGH 281
I N G T P + +R +V SS G
Sbjct: 123 ANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSSIGGL 182
Query: 282 LSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPD-SAYAVSKIGVNLLTRIY 340
+G + Y SK G++ L R
Sbjct: 183 -------------------------------------RGAENIGNYIASKHGLHGLMRTM 205
Query: 341 QKKFDCELGNQDKVINAVHPGYVATNMSSFMGNVNIFDDSSTFNAFERVISHFLIGQQI 399
ELG ++ +N V P VAT M +F E +
Sbjct: 206 AL----ELGPRNIRVNIVCPSSVATPMLLNEPTYRMFRPDLENPTVEDFQVASRQMHVL 260
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural
genomics, structural genomics CON SGC; 2.40A {Homo
sapiens} SCOP: c.2.1.2
Length = 270
Score = 41.8 bits (99), Expect = 2e-04
Identities = 37/231 (16%), Positives = 62/231 (26%), Gaps = 99/231 (42%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKD---------RAS 236
+V VVTG +G+G GIV++ G + + +D+ G Q L +
Sbjct: 10 KVVVVTGGGRGIGAGIVRAFVNS--GARVVICDKDESGGRALEQELPGAVFILCDVTQED 67
Query: 237 TVPFAIQA--------------------------------EKTILTNYLGLVRTCVFL-- 262
V + + + N LG +
Sbjct: 68 DVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLG-----TYTLT 122
Query: 263 ---FPLLRR-HARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVA 318
P LR+ V+N+SS G
Sbjct: 123 KLALPYLRKSQGNVINISSLVGA------------------------------------- 145
Query: 319 KGWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKV-INAVHPGYVATNM 367
G Y +K V +T+ + V +N + PG + T +
Sbjct: 146 IGQAQAVPYVATKGAVTAMTKALAL----DES-PYGVRVNCISPGNIWTPL 191
>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B),
NAD(P)-binding rossmann-fold structural genomics,
NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}
Length = 207
Score = 41.4 bits (98), Expect = 2e-04
Identities = 30/217 (13%), Positives = 54/217 (24%), Gaps = 86/217 (39%)
Query: 189 AVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRAS----TVPFAIQ 243
++TGA GLG + G+ + L+ R AE + + RA +
Sbjct: 3 VLITGATGGLG----GAFARALKGHDLLLSGRRAGALAELAREVGARALPADLADELEAK 58
Query: 244 A-------------------------------EKTILTNYLGLVRTCVFLFPLL--RRHA 270
A E+ + + L + ++ A
Sbjct: 59 ALLEEAGPLDLLVHAVGKAGRASVREAGRDLVEEMLAAHLLTAAF----VLKHARFQKGA 114
Query: 271 RVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSK 330
R V + ++ P +AYA +K
Sbjct: 115 RAVFFGAYPRYVQV----------------------------PGF--------AAYAAAK 138
Query: 331 IGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
+ EL + + V VAT +
Sbjct: 139 GALEAYLEA----ARKELLREGVHLVLVRLPAVATGL 171
Score = 31.0 bits (71), Expect = 0.64
Identities = 5/41 (12%), Positives = 13/41 (31%), Gaps = 6/41 (14%)
Query: 414 QAEKTILTNYLGLVRTCVFLFPLL--RRHARVVNLSSSAGH 452
E+ + + L + ++ AR V + +
Sbjct: 89 LVEEMLAAHLLTAAF----VLKHARFQKGARAVFFGAYPRY 125
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein]
reductase; structural genomics; 2.25A {Mycobacterium
avium subsp}
Length = 253
Score = 41.7 bits (99), Expect = 3e-04
Identities = 34/231 (14%), Positives = 64/231 (27%), Gaps = 95/231 (41%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLK------------- 232
+V +VTG+ G+G ++L + G + + + + + +
Sbjct: 10 KVGIVTGSGGGIGQAYAEALARE--GAAVVVADINAEAAEAVAKQIVADGGTAISVAVDV 67
Query: 233 -DRASTVPFAIQAEKT-----ILTNYLGLVRTC-----------------------VFLF 263
D S A + L N +
Sbjct: 68 SDPESAKAMADRTLAEFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWC 127
Query: 264 ------PLLR-RHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAH 316
+ + +VN SS+A L
Sbjct: 128 TRAVYKKMTKRGGGAIVNQSSTAAWLYS-------------------------------- 155
Query: 317 VAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
+ Y ++K+G+N LT+ + ELG ++ INA+ PG + T
Sbjct: 156 -------NYYGLAKVGINGLTQQLSR----ELGGRNIRINAIAPGPIDTEA 195
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl
reductase, oxidoreductase; 1.49A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Length = 247
Score = 41.4 bits (98), Expect = 3e-04
Identities = 42/234 (17%), Positives = 67/234 (28%), Gaps = 82/234 (35%)
Query: 172 LSITGIVNGSVDPSERVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQV 230
++ T R +VTG N+G+G I + L G+ + +T R V
Sbjct: 1 MTATATEGAKPPFVSRSVLVTGGNRGIGLAIAQRLAAD--GHKVAVTHRGSGAPKGLFGV 58
Query: 231 ---LKDRASTVPFAIQAEKT-----ILTNYLGLVR--------------------TCVFL 262
+ D + E+ +L + GL T F
Sbjct: 59 EVDVTDSDAVDRAFTAVEEHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFR 118
Query: 263 F------PLLR-RHARVVNLSSSAGHLSQI--TNLELKKRLRQLREPVSLRSLNITKEHP 313
+ R + R++ + S +G N
Sbjct: 119 VAQRASRSMQRNKFGRMIFIGSVSGLWGIGNQAN-------------------------- 152
Query: 314 RAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
YA SK GV + R + EL + N V PGY+ T+M
Sbjct: 153 ------------YAASKAGVIGMARSIAR----ELSKANVTANVVAPGYIDTDM 190
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.5 bits (99), Expect = 3e-04
Identities = 78/542 (14%), Positives = 147/542 (27%), Gaps = 169/542 (31%)
Query: 14 LMFLTLKSVAIGSLLLFIATVSVLSRIKY-WLSPSSPPVVTPVTTFSSSP---VNAFVSP 69
+F TL S + F+ V RI Y +L ++P+ T P ++
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVL---RINYKFL-------MSPIKTEQRQPSMMTRMYIEQ 115
Query: 70 VNAFASPVNAFA----------SPLRNAV--LQSEAG------DGNG---------SNIH 102
+ + FA LR A+ L+ G+G +
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175
Query: 103 VHIHMNESQGMHWGTSSHIPDPAS-----------SYPPMVPMPDHTYAQNPYPYPPA-- 149
V M+ + W + P + P DH+
Sbjct: 176 VQCKMDF--KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS---NIKLRIHSI 230
Query: 150 ----RDTYLHPPSGASM------WSRQGVDG------PLSIT---GIVNGSVDPSERVAV 190
R P + + + + L T + + +
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS 290
Query: 191 VTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQV-----------LKDRASTVP 239
+ + L VKSL + YL R + E + ++D +T
Sbjct: 291 LDHHSMTLTPDEVKSLLLK-----YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD 345
Query: 240 F--AIQAEK--TILTNYL-----GLVRTC---VFLFP----------------------- 264
+ +K TI+ + L R + +FP
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405
Query: 265 ----------LLRRHARVVNLSSSAGHLSQITNLELKKRL-RQLREPVSLRSLNITKEHP 313
L+ + + +S + +L LE + L R + + NI K
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD-----HYNIPKTFD 460
Query: 314 RAHVAKGWPDSAYAVSKIG-----------VNLLTRIYQK-KFDCELGNQDKVINAVHPG 361
+ + D Y S IG + L ++ +F L K+ +
Sbjct: 461 SDDLIPPYLDQ-YFYSHIGHHLKNIEHPERMTLFRMVFLDFRF---LEQ--KIRHDSTAW 514
Query: 362 YVATNMSSFMGNVN-----IFDDSSTFNAFERVISHFLIGQQINTFI-PAIYTVPFAIQA 415
+ ++ + + + I D+ + I FL + N + A+ A
Sbjct: 515 NASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMA 574
Query: 416 EK 417
E
Sbjct: 575 ED 576
Score = 36.4 bits (83), Expect = 0.027
Identities = 35/262 (13%), Positives = 75/262 (28%), Gaps = 81/262 (30%)
Query: 288 LELKKRLRQLREPVS-------------------LRSLNITKEHPRAHVAKGW-----PD 323
L+L++ L +LR P S + + + W +
Sbjct: 138 LKLRQALLELR-PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF-KIF--WLNLKNCN 193
Query: 324 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMGNVN------IF 377
S V ++ LL +I + I + + + + + +
Sbjct: 194 SPETVLEMLQKLLYQIDPN--WTSRSDHSSNI-KLRIHSIQAELRRLLKSKPYENCLLVL 250
Query: 378 DD---SSTFNAFE---RVISHFLI---GQQINTFIPAIYTVPFAIQAEKTILT--NYLGL 426
+ + +NAF ++ L+ +Q+ F+ A T ++ LT L
Sbjct: 251 LNVQNAKAWNAFNLSCKI----LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 427 VRTCVFL-FPLLRRHARVVN-LSSSAGHLSQI----------------TNLELKKRLMED 468
+ + L R N LS I N + ++E
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPR-----RLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361
Query: 469 CVSERQLTDM--MYE----FME 484
++ + + M++ F
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPP 383
>3rih_A Short chain dehydrogenase or reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: PG5; 2.15A {Mycobacterium
abscessus}
Length = 293
Score = 41.8 bits (99), Expect = 3e-04
Identities = 38/229 (16%), Positives = 55/229 (24%), Gaps = 89/229 (38%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLK------------- 232
R +VTG KG+G GI G + + AR ++ + L
Sbjct: 42 RSVLVTGGTKGIGRGIATVFARA--GANVAVAARSPRELSSVTAELGELGAGNVIGVRLD 99
Query: 233 --DRASTVPFAIQAEKT-----ILTNYLGLVR--------------------TCVFLF-- 263
D S A ++ G+
Sbjct: 100 VSDPGSCADAARTVVDAFGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQ 159
Query: 264 ----PLLR-RHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVA 318
PL RV+ SS G ++
Sbjct: 160 ACLAPLTASGRGRVILTSSITGPVTG----------------------YP---------- 187
Query: 319 KGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
GW S Y SK R EL + +NA+ PG + T
Sbjct: 188 -GW--SHYGASKAAQLGFMRTAAI----ELAPRGVTVNAILPGNILTEG 229
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein
structure initiative, PSI-biology; 2.50A {Sinorhizobium
meliloti}
Length = 280
Score = 41.4 bits (98), Expect = 3e-04
Identities = 41/209 (19%), Positives = 67/209 (32%), Gaps = 45/209 (21%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLT-ARDKKKGAEAVQVLK------------ 232
VA+VTG +G+G GI ++L G+ I +T D + A + L
Sbjct: 30 PVAIVTGGRRGIGLGIARALAAS--GFDIAITGIGDAEGVAPVIAELSGLGARVIFLRAD 87
Query: 233 --DRASTVPFAIQAEKT-----ILTNYLGLVRTCVFLFPLLRRHA----RV--VNLSSSA 279
D +S L N G+ + L + VNL
Sbjct: 88 LADLSSHQATVDAVVAEFGRIDCLVNNAGI--ASIVRDDFLDLKPENFDTIVGVNLRG-T 144
Query: 280 GHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSA-YAVSKIGVNLLTR 338
+Q + K + S +NIT P+ Y +SK G+ ++
Sbjct: 145 VFFTQ----AVLKAMLASDARASRSIINITS----VSAVMTSPERLDYCMSKAGLAAFSQ 196
Query: 339 IYQKKFDCELGNQDKVINAVHPGYVATNM 367
L + V PG + ++M
Sbjct: 197 GLAL----RLAETGIAVFEVRPGIIRSDM 221
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta;
rossman fold, structural genomics, NPPSFA; 2.40A
{Thermus thermophilus}
Length = 234
Score = 41.0 bits (97), Expect = 4e-04
Identities = 39/232 (16%), Positives = 61/232 (26%), Gaps = 95/232 (40%)
Query: 186 ERVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPF---- 240
+ ++TGA++G+G + L + GY + L ARD+K+ L + A +P
Sbjct: 5 KGAVLITGASRGIGEATARLLHAK--GYRVGLMARDEKRLQALAAEL-EGALPLPGDVRE 61
Query: 241 --AIQA-----------------------------------EKTILTNYLGLVRTCVFLF 263
+ TN G
Sbjct: 62 EGDWARAVAAMEEAFGELSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAV 121
Query: 264 PLLRRHAR--VVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGW 321
P L R +VN+ S AG +
Sbjct: 122 PALLRRGGGTIVNVGSLAGK-------------------------------------NPF 144
Query: 322 PDSA-YAVSKIGVNLLT---RIYQKKFDCELGNQDKVINAVHPGYVATNMSS 369
A Y SK G+ L +L + + V PG V T +
Sbjct: 145 KGGAAYNASKFGLLGLAGAAM-------LDLREANVRVVNVLPGSVDTGFAG 189
Score = 32.1 bits (74), Expect = 0.33
Identities = 11/39 (28%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 416 EKTILTNYLGLVRTCVFLFPLLRRHAR--VVNLSSSAGH 452
+ TN G P L R +VN+ S AG
Sbjct: 103 RLVLDTNLTGAFLGIRHAVPALLRRGGGTIVNVGSLAGK 141
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold,
oxidoreductase; HET: NAD; 1.75A {Sulfolobus
acidocaldarius}
Length = 254
Score = 41.3 bits (98), Expect = 4e-04
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 320 GWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
G + Y V+K G+ LTR G+Q AV PG V TN+
Sbjct: 150 GGFAGAPYTVAKHGLIGLTRSIAA----HYGDQGIRAVAVLPGTVKTNI 194
Score = 31.7 bits (73), Expect = 0.46
Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKD 233
+V +VTGA G+G I K + + + + VQ L+
Sbjct: 8 KVVIVTGAGSGIGRAIAKKFALN--DSIVVAVELLEDRLNQIVQELRG 53
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid,
structural genomics, seattle structural genomics CEN
infectious disease; HET: NAD PG4; 1.55A {Mycobacterium
avium} PDB: 3uwr_A*
Length = 286
Score = 41.4 bits (98), Expect = 4e-04
Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 7/83 (8%)
Query: 319 KGWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKV-INAVHPGYVATNMSSFMGNVNI 376
K +P Y +K GV L R + ELG Q + +N+VHP +V T M G +
Sbjct: 170 KAYPHTGHYVAAKHGVVGLMRAFGV----ELG-QHMIRVNSVHPTHVKTPMLHNEGTFKM 224
Query: 377 FDDSSTFNAFERVISHFLIGQQI 399
F + + + +
Sbjct: 225 FRPDLENPGPDDMAPICQMFHTL 247
Score = 29.1 bits (66), Expect = 2.8
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 6/30 (20%)
Query: 170 GPLSITGIVNGSVDPSERVAVVTGANKGLG 199
GP S+TG V G +VA VTGA +G G
Sbjct: 1 GPGSMTGRVEG------KVAFVTGAARGQG 24
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.95A {Mycobacterium marinum}
Length = 276
Score = 41.0 bits (97), Expect = 4e-04
Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKD 233
+ A++TGA+ G+G + + E G + + AR +
Sbjct: 33 KRALITGASTGIGKKVALAYAEA--GAQVAVAARHSDALQVVADEIAG 78
Score = 38.3 bits (90), Expect = 0.003
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 317 VAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM 371
+ S Y SK V LT K EL +N+V PGY+ T + +
Sbjct: 175 INIPQQVSHYCTSKAAVVHLT----KAMAVELAPHQIRVNSVSPGYIRTELVEPL 225
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein
structure initiative, NEW YORK structural genomix
research consortium; 1.69A {Xanthomonas campestris PV}
Length = 274
Score = 41.0 bits (97), Expect = 4e-04
Identities = 41/218 (18%), Positives = 77/218 (35%), Gaps = 45/218 (20%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVP------ 239
+ +TGA++G+G I DG + + A+ + + A+ V
Sbjct: 7 KTLFITGASRGIGLAIALRAAR--DGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQG 64
Query: 240 FAIQAEKTILTNYLGLVRTCVFLFPLLRRHARV---VNLSSSAGHLSQITNLELKK---- 292
A++ + V V + VN ++SA L + +K+
Sbjct: 65 LALKCDIREEDQVRAAVAATV------DTFGGIDILVN-NASAIWLRGTLDTPMKRFDLM 117
Query: 293 -----R---------LRQLREPVSLRSLNITKEHPRAHVAKGWP-DSAYAVSKIGVNLLT 337
R L L + + L + P + W + Y ++K+G++L+T
Sbjct: 118 QQVNARGSFVCAQACLPHLLQAPNPHILTLAP--PPSLNPAWWGAHTGYTLAKMGMSLVT 175
Query: 338 RIYQKKFDCELGNQDKVINAVHPG-YVATNMSSFMGNV 374
E G Q INA+ P +AT+ + + V
Sbjct: 176 LGLAA----EFGPQGVAINALWPRTVIATDAINMLPGV 209
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain,
oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans}
SCOP: c.2.1.2
Length = 262
Score = 41.0 bits (97), Expect = 5e-04
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 320 GWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
G P+ +AY SK + LT +L + +NA+ PGY+
Sbjct: 150 GPPNMAAYGTSKGAIIALTETAAL----DLAPYNIRVNAISPGYMGPGF 194
Score = 34.5 bits (80), Expect = 0.059
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKD 233
+V +VTGA +G L E+ G I L +++ +A +++
Sbjct: 8 KVCLVTGAGGNIGLATALRLAEE--GTAIALLDMNREALEKAEASVRE 53
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium}
SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A
3aut_A* 3auu_A*
Length = 261
Score = 40.9 bits (97), Expect = 5e-04
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Query: 320 GWPDSA-YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
WP YA SK G+ L+T E + +N + PG + T +
Sbjct: 151 PWPLFVHYAASKGGMKLMTETLAL----EYAPKGIRVNNIGPGAINTPI 195
Score = 36.3 bits (85), Expect = 0.014
Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAV 228
+V V+TG++ GLG + + + + R K+ A +V
Sbjct: 8 KVVVITGSSTGLGKSMAIRFATE--KAKVVVNYRSKEDEANSV 48
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase;
ssgcid, decode, niaid, UWPPG, SBRI, structural genomics;
2.45A {Mycobacterium tuberculosis}
Length = 277
Score = 41.0 bits (97), Expect = 5e-04
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 7/50 (14%)
Query: 320 GWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKV-INAVHPGYVATNM 367
AY +SK G+ L+RI EL + N + P +V T M
Sbjct: 168 AVGGTGAYGMSKAGIIQLSRITAA----ELR-SSGIRSNTLLPAFVDTPM 212
Score = 30.6 bits (70), Expect = 0.87
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKDRASTV 238
+VA+VTGA G+G + + L ++ G ++ D A + A+
Sbjct: 30 KVAIVTGAGAGIGLAVARRLADE--GCHVLCADIDGDAADAAATKIGCGAAAC 80
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 2.40A {Thermus thermophilus} SCOP:
c.2.1.2
Length = 245
Score = 40.6 bits (96), Expect = 5e-04
Identities = 39/224 (17%), Positives = 63/224 (28%), Gaps = 87/224 (38%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLK---------DRAS 236
+ ++TGA G+G ++ ++ G + ++ EA + + D AS
Sbjct: 6 KAVLITGAAHGIGRATLELFAKE--GARLVACDIEEGPLREAAEAVGAHPVVMDVADPAS 63
Query: 237 TVPFAIQAEKT-----ILTNYLGLVR--------------------TCVFLF------PL 265
+A + +Y G+ R T FL +
Sbjct: 64 VERGFAEALAHLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAM 123
Query: 266 LR-RHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDS 324
+V +S V G
Sbjct: 124 REKNPGSIVLTASR--------------------------------------VYLGNLGQ 145
Query: 325 A-YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
A YA S GV LTR ELG +N + PG++ T M
Sbjct: 146 ANYAASMAGVVGLTRTLAL----ELGRWGIRVNTLAPGFIETRM 185
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase, FAT
biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia
prowazekii}
Length = 249
Score = 40.6 bits (96), Expect = 5e-04
Identities = 35/223 (15%), Positives = 71/223 (31%), Gaps = 86/223 (38%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPFAI--- 242
+ +++TGA+ G+G I + L + G + ++ +++K LKD + +
Sbjct: 15 KTSLITGASSGIGSAIARLLHKL--GSKVIISGSNEEKLKSLGNALKDNYTIEVCNLANK 72
Query: 243 -QAEK--------TILTNYLGLVR--------------------TCVFLF------PLLR 267
+ IL G+ F+ +++
Sbjct: 73 EECSNLISKTSNLDILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQ 132
Query: 268 -RHARVVNLSSSAGHLSQI--TNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDS 324
R+ R++N+SS G N
Sbjct: 133 KRYGRIINISSIVGIAGNPGQAN------------------------------------- 155
Query: 325 AYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
Y SK G+ +T+ E+ + +NAV PG++ ++M
Sbjct: 156 -YCASKAGLIGMTKSLSY----EVATRGITVNAVAPGFIKSDM 193
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase,
combinatorial biosynthesis, short chain
dehydrogenase/reductase; HET: NAP EMO; 2.10A
{Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A*
1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A*
1xr3_A*
Length = 277
Score = 40.7 bits (96), Expect = 5e-04
Identities = 43/232 (18%), Positives = 67/232 (28%), Gaps = 95/232 (40%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLK------------- 232
VA+VTGA G+G I + L ++ G +++ AR ++ ++ L+
Sbjct: 23 EVALVTGATSGIGLEIARRLGKE--GLRVFVCARGEEGLRTTLKELREAGVEADGRTCDV 80
Query: 233 -DRASTVPFAIQAEKT-----ILTNYLGLVR--------------------TCVFLFP-- 264
+ +L N G T VF
Sbjct: 81 RSVPEIEALVAAVVERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQ 140
Query: 265 -------LLRRHARVVNLSSSAGHLSQI--TNLELKKRLRQLREPVSLRSLNITKEHPRA 315
L R R+VN++S+ G +
Sbjct: 141 VLKAGGMLERGTGRIVNIASTGGKQGVVHAAP---------------------------- 172
Query: 316 HVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
Y+ SK GV T+ EL +NAV PG+V T M
Sbjct: 173 ----------YSASKHGVVGFTKALGL----ELARTGITVNAVCPGFVETPM 210
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET:
NDP; 2.40A {Streptomyces griseoruber}
Length = 279
Score = 40.7 bits (96), Expect = 6e-04
Identities = 47/230 (20%), Positives = 65/230 (28%), Gaps = 91/230 (39%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLK------------- 232
+ A VTG + G+G + ++L + G +Y ARD K + AV L+
Sbjct: 25 QTAFVTGVSSGIGLAVARTLAAR--GIAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDV 82
Query: 233 -DRASTVPFAIQAEK-----TILTNYLGLVR--------------------TCVFLFP-- 264
A + IL N G T VF
Sbjct: 83 TSTDEVHAAVAAAVERFGPIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTRE 142
Query: 265 -------LLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHV 317
R+VN++S+ G +
Sbjct: 143 VLRAGGMREAGWGRIVNIASTGGKQGV------------------------------MYA 172
Query: 318 AKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
A Y SK GV T+ EL +NAV PGYV T M
Sbjct: 173 A------PYTASKHGVVGFTKSVGF----ELAKTGITVNAVCPGYVETPM 212
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET:
NAD KPC; 1.8A {Xanthobacter autotrophicus}
Length = 250
Score = 40.5 bits (96), Expect = 6e-04
Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 5/49 (10%)
Query: 320 GWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
+P SAY SK V LT+ + NAV PG + T M
Sbjct: 148 AFPGRSAYTTSKGAVLQLTKSVAV----DYAGSGIRCNAVCPGMIETPM 192
Score = 31.7 bits (73), Expect = 0.46
Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKDRASTVPFAIQA 244
RVA+VTGA+ G G I + G + + E + + ++A
Sbjct: 3 RVAIVTGASSGNGLAIATRFLAR--GDRVAALDLSAETLEETARTHWHAYADKVLRVRA 59
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus
thermophilus HB8, structural genomics, NPPSFA; HET: NAD;
1.65A {Thermus thermophilus} SCOP: c.2.1.2
Length = 256
Score = 40.5 bits (96), Expect = 6e-04
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 319 KGWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
+ +AY SK G+ LTR +L +NAV PG +AT
Sbjct: 141 FAEQENAAYNASKGGLVNLTRSLAL----DLAPLRIRVNAVAPGAIATEA 186
Score = 30.1 bits (69), Expect = 1.4
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQ 209
+ +VTG +G+G I ++ +
Sbjct: 7 KGVLVTGGARGIGRAIAQAFARE 29
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase;
1.99A {Streptomyces coelicolor}
Length = 253
Score = 40.6 bits (96), Expect = 6e-04
Identities = 45/218 (20%), Positives = 71/218 (32%), Gaps = 80/218 (36%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQV---LKDRASTVPFAI 242
R +VTG N+G+G I ++ + G + +T R + + V + D
Sbjct: 22 RSVLVTGGNRGIGLAIARAFADA--GDKVAITYRSGEPPEGFLAVKCDITDTEQVEQAYK 79
Query: 243 QAEKT-----ILTNYLGLVR--------------------TCVFLF------PLLR-RHA 270
+ E+T +L G+ + T F +LR +
Sbjct: 80 EIEETHGPVEVLIANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRAKKG 139
Query: 271 RVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSA-YAVS 329
RVV +SS G G A YA S
Sbjct: 140 RVVLISSVVG-------------------------------------LLGSAGQANYAAS 162
Query: 330 KIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
K G+ R + ELG+++ N V PG+V T+M
Sbjct: 163 KAGLVGFARSLAR----ELGSRNITFNVVAPGFVDTDM 196
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A
{Gluconobacter oxydans}
Length = 260
Score = 40.6 bits (96), Expect = 6e-04
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKD 233
RVA+VTG + +G V +L E G + + D+ +AV+ L+
Sbjct: 14 RVAIVTGGAQNIGLACVTALAEA--GARVIIADLDEAMATKAVEDLRM 59
Score = 39.8 bits (94), Expect = 0.001
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Query: 324 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM 371
+AY SK GV+ + E NAV P Y+ T ++ F
Sbjct: 163 AAYNASKAGVHQYI----RSLAAEWAPHGIRANAVAPTYIETTLTRFG 206
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A
{Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A*
2bgm_A*
Length = 278
Score = 40.6 bits (96), Expect = 6e-04
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 6/54 (11%)
Query: 315 AHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKV-INAVHPGYVATNM 367
+ A Y +K V LT ELG + + +N V P VA+ +
Sbjct: 156 SFTAGEGVSHVYTATKHAVLGLTTSLC----TELG-EYGIRVNCVSPYIVASPL 204
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein]
reductase; PSI-biology, structural genomics, protein
structure initiati nysgrc; 2.70A {Sinorhizobium
meliloti}
Length = 283
Score = 40.6 bits (96), Expect = 6e-04
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 5/54 (9%)
Query: 315 AHVAKGWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
P +AY +K + + ELG +NAV PG + TN+
Sbjct: 168 GTRTFTTPGATAYTATKAAQVAIVQQLAL----ELGKHHIRVNAVCPGAIETNI 217
Score = 30.6 bits (70), Expect = 0.94
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKD 233
VA++TGA G+G +L G + R + + E +
Sbjct: 29 PVALITGAGSGIGRATALALAAD--GVTVGALGRTRTEVEEVADEIVG 74
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease, oxidoreductase; 2.50A {Mycobacterium marinum}
Length = 271
Score = 40.6 bits (96), Expect = 6e-04
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 5/49 (10%)
Query: 320 GWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
+ +AYA +K + LTR + G NA+ PG V T
Sbjct: 152 AYDMSTAYACTKAAIETLTRYVAT----QYGRHGVRCNAIAPGLVRTPR 196
Score = 30.6 bits (70), Expect = 1.1
Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 9/71 (12%)
Query: 170 GPLSITGIVNGSVDPSERVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAV 228
GP S+T + +VA++TGA G+G + L G + L + A A
Sbjct: 1 GPGSMTAELEN------KVAIITGACGGIGLETSRVLARA--GARVVLADLPETDLAGAA 52
Query: 229 QVLKDRASTVP 239
+ A
Sbjct: 53 ASVGRGAVHHV 63
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 41.4 bits (97), Expect = 6e-04
Identities = 36/188 (19%), Positives = 67/188 (35%), Gaps = 39/188 (20%)
Query: 185 SERVAVVTGANKG-LGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVL-KDRAST----- 237
++ ++TGA KG +G +++ L + + T+R K+ + Q + +
Sbjct: 475 KDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLI 534
Query: 238 -VPFAIQAEKT---ILTNY---------LGLVRTCVFLFPLLRRHARVV-NLSSSA--GH 281
VPF Q K L + LG + F + + ++ S + H
Sbjct: 535 VVPFN-QGSKQDVEALIEFIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAH 593
Query: 282 LSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVA-KGWP-------DSAYAVSKIGV 333
+TN+ R + +S + P A V P D Y+ SK+ +
Sbjct: 594 RIMLTNIL-----RMMGCVKKQKSARGIETRP-AQVILPMSPNHGTFGGDGMYSESKLSL 647
Query: 334 N-LLTRIY 340
L R +
Sbjct: 648 ETLFNRWH 655
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Length = 324
Score = 40.5 bits (95), Expect = 8e-04
Identities = 24/148 (16%), Positives = 45/148 (30%), Gaps = 54/148 (36%)
Query: 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYI-YLTARD-KKKGAEAVQVLKDRASTVPFAI 242
S+++ ++TGA+ G G ++L G+ Y + RD + A V+ + A +
Sbjct: 4 SKKIILITGASSGFGRLTAEALAGA--GHRVYASMRDIVGRNASNVEAIAGFARDNDVDL 61
Query: 243 ------------------------------------------------QAEKTILTNYLG 254
Q + N L
Sbjct: 62 RTLELDVQSQVSVDRAIDQIIGEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLS 121
Query: 255 LVRTCVFLFPLLR--RHARVVNLSSSAG 280
R P +R +H ++ +SSS+
Sbjct: 122 TQRVNRAALPHMRRQKHGLLIWISSSSS 149
Score = 32.0 bits (73), Expect = 0.34
Identities = 14/89 (15%), Positives = 25/89 (28%), Gaps = 24/89 (26%)
Query: 378 DDSSTFNAFERVISHF-------------LIGQQINTFIPAIYTVPFAIQAEKTILTNYL 424
S A +++I + G Q + N L
Sbjct: 70 SQVSVDRAIDQIIGEDGRIDVLIHNAGHMVFG--------PAEAFTPE-QFAELYDINVL 120
Query: 425 GLVRTCVFLFPLLR--RHARVVNLSSSAG 451
R P +R +H ++ +SSS+
Sbjct: 121 STQRVNRAALPHMRRQKHGLLIWISSSSS 149
>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold,
short-chain dehydrogenase/reducta ALLO-threonine
dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*
Length = 248
Score = 40.2 bits (95), Expect = 8e-04
Identities = 28/139 (20%), Positives = 44/139 (31%), Gaps = 47/139 (33%)
Query: 188 VAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPF------ 240
+ +VTGA G G I + +Q G+ + T R +++ E L D
Sbjct: 2 IVLVTGATAGFGECITRRFIQQ--GHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRA 59
Query: 241 AIQA------------------------------------EKTILTNYLGLVRTCVFLFP 264
AI+ E I TN GLV + P
Sbjct: 60 AIEEMLASLPAEWCNIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLP 119
Query: 265 LLRRHAR--VVNLSSSAGH 281
+ ++N+ S+AG
Sbjct: 120 GMVERNHGHIINIGSTAGS 138
Score = 31.7 bits (73), Expect = 0.40
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 416 EKTILTNYLGLVRTCVFLFPLLRRHAR--VVNLSSSAGH 452
E I TN GLV + P + ++N+ S+AG
Sbjct: 100 ETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGS 138
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia
aquatica} SCOP: c.2.1.2
Length = 267
Score = 40.2 bits (95), Expect = 9e-04
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 320 GWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
G + S YA +K GV LTR E G INA+ PG + T M
Sbjct: 158 GIGNQSGYAAAKHGVVGLTRNSAV----EYGRYGIRINAIAPGAIWTPM 202
Score = 30.6 bits (70), Expect = 0.98
Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKDRA 235
RV ++TG GLG L + G + L + + + + A
Sbjct: 14 RVVLITGGGSGLGRATAVRLAAE--GAKLSLVDVSSEGLEASKAAVLETA 61
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP}
SCOP: c.2.1.2 PDB: 2ewm_A*
Length = 249
Score = 39.8 bits (94), Expect = 9e-04
Identities = 36/227 (15%), Positives = 55/227 (24%), Gaps = 89/227 (39%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY----IYLTARD------KKKGAEAVQV---LKD 233
++AV+TG G+G I + + G L + G + V +
Sbjct: 8 KLAVITGGANGIGRAIAERFAVE--GADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQ 65
Query: 234 RASTVPFAIQAEKT-----ILTNYLGLVR--------------------TCVFLF----- 263
F Q T IL N G+ FL
Sbjct: 66 PGDVEAFGKQVISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFV 125
Query: 264 -PLLR-RHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGW 321
+ R R++NL+S+
Sbjct: 126 PGMKRNGWGRIINLTSTTYW-------------------------------------LKI 148
Query: 322 PDSA-YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
Y +K TR +LG +NA+ P V T
Sbjct: 149 EAYTHYISTKAANIGFTRALAS----DLGKDGITVNAIAPSLVRTAT 191
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid,
3-ketoacyl-(acyl-carrier-protein) reductase, mycobac
paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium
subsp}
Length = 278
Score = 39.9 bits (94), Expect = 0.001
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 324 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
Y +K GV L R+Y L Q +N++HP V T M
Sbjct: 173 VGYVAAKHGVVGLMRVYAN----LLAGQMIRVNSIHPSGVETPM 212
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.85A {Mycobacterium avium}
Length = 280
Score = 39.8 bits (94), Expect = 0.001
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 324 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
Y+ SK G+ LT ELG +N++HP V T M
Sbjct: 176 GHYSASKHGLTALTNTLAI----ELGEYGIRVNSIHPYSVETPM 215
Score = 32.1 bits (74), Expect = 0.33
Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 17/84 (20%)
Query: 170 GPLSITGIVNGSVDPSERVAVVTGANKGLGFG------------IVKSLCEQFDGYIYLT 217
GP S+ GS+ RVA +TGA +G G I +C +
Sbjct: 1 GPGSMVAGQAGSLQ--GRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYA 58
Query: 218 ARDKKKGAEAVQVLKD---RASTV 238
+ E ++++D +A T
Sbjct: 59 PASPEDLDETARLVEDQGRKALTR 82
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4;
1.60A {Thermococcus sibiricus}
Length = 235
Score = 39.4 bits (93), Expect = 0.001
Identities = 26/143 (18%), Positives = 44/143 (30%), Gaps = 50/143 (34%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKD----RASTVPF- 240
+VAV+TGA++G+G I ++L GY + L AR + + L
Sbjct: 3 KVAVITGASRGIGEAIARALARD--GYALALGARSVDRLEKIAHELMQEQGVEVFYHHLD 60
Query: 241 -----AIQA-----------------------------------EKTILTNYLGLVRTCV 260
+++ + I N LG+ RT
Sbjct: 61 VSKAESVEEFSKKVLERFGDVDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLK 120
Query: 261 FLFPLLRRHAR--VVNLSSSAGH 281
L+R +V S +
Sbjct: 121 AFLDSLKRTGGLALVTTSDVSAR 143
Score = 32.1 bits (74), Expect = 0.28
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 416 EKTILTNYLGLVRTCVFLFPLLRRHAR--VVNLSSSAGH 452
+ I N LG+ RT L+R +V S +
Sbjct: 105 HEMIEVNLLGVWRTLKAFLDSLKRTGGLALVTTSDVSAR 143
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain
dehydrogenase/reductase, 4-pyridoxola NAD+,
oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti}
PDB: 3ndr_A* 3nug_A*
Length = 247
Score = 39.0 bits (92), Expect = 0.002
Identities = 38/228 (16%), Positives = 64/228 (28%), Gaps = 91/228 (39%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPF----- 240
+ A+VTGA +G+G I L G + ++ + + A + +A +
Sbjct: 7 KTALVTGAAQGIGKAIAARLAAD--GATVIVSDINAEGAKAAAASIGKKARAIAADISDP 64
Query: 241 --------AIQAEK---TILTNYLGLVR--------------------TCVFLF------ 263
IQA IL N +V T F+
Sbjct: 65 GSVKALFAEIQALTGGIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTD 124
Query: 264 PLLR--RHARVVNLSSSAGHLSQI--TNLELKKRLRQLREPVSLRSLNITKEHPRAHVAK 319
+ + RV++++S+
Sbjct: 125 QMRAAGKAGRVISIASNTFFAGTPNMAA-------------------------------- 152
Query: 320 GWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
Y +K GV TR ELG + NAV PG + ++
Sbjct: 153 ------YVAAKGGVIGFTRALAT----ELGKYNITANAVTPGLIESDG 190
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid,
structural genomics; 1.95A {Mycobacterium
thermoresistibile}
Length = 317
Score = 39.2 bits (92), Expect = 0.002
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 324 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
S YA SK GV L E+G + +N+V+PG V T M
Sbjct: 206 SHYAASKHGVQGLMLSLAN----EVGRHNIRVNSVNPGAVNTEM 245
Score = 30.3 bits (69), Expect = 1.5
Identities = 15/79 (18%), Positives = 24/79 (30%), Gaps = 18/79 (22%)
Query: 131 MVPMPDHTYAQNPYPYPPARDTYLHPPSGASMWSRQGVDGPLSITGIVNGSVDPSERVAV 190
M + T P R T + + +R + G +VA
Sbjct: 9 MGTLEAQTQGPGSMVDPVRRSTRVSARGQGARMNR--LQG----------------KVAF 50
Query: 191 VTGANKGLGFGIVKSLCEQ 209
+TGA +G G L +
Sbjct: 51 ITGAARGQGRTHAVRLAQD 69
>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones,
alternative binding mode, oxidoreductase; HET: TES;
1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A*
1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A*
3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A*
3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...
Length = 327
Score = 38.9 bits (91), Expect = 0.003
Identities = 24/148 (16%), Positives = 41/148 (27%), Gaps = 49/148 (33%)
Query: 185 SERVAVVTGANKGLGFGIVKSLCEQFD-GYI-YLTARDKKKGAEAVQVLKDRAS------ 236
+ V ++TG + G+G + L + Y T RD K + + A
Sbjct: 1 ARTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLE 60
Query: 237 ------TVPFAIQA------EKTI--L-------------------------TNYLGLVR 257
++ A E + L N +G VR
Sbjct: 61 TLQLDVRDSKSVAAARERVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVR 120
Query: 258 TCVFLFPLLR--RHARVVNLSSSAGHLS 283
P ++ RV+ S G +
Sbjct: 121 MLQAFLPDMKRRGSGRVLVTGSVGGLMG 148
Score = 33.9 bits (78), Expect = 0.11
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 421 TNYLGLVRTCVFLFPLLR--RHARVVNLSSSAGHLS 454
N +G VR P ++ RV+ S G +
Sbjct: 113 VNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMG 148
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE
NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB:
3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A*
1i01_A* 1q7c_A* 2cf2_E
Length = 248
Score = 38.2 bits (90), Expect = 0.003
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPF 240
+VA+VTGA++G+G I + L E+ G + TA + L D +
Sbjct: 10 KVALVTGASRGIGKAIAELLAER--GAKVIGTATSESGAQAISDYLGDNGKGMAL 62
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center
for structural genomics of infectious diseases,
oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus
anthracis str}
Length = 257
Score = 38.3 bits (90), Expect = 0.003
Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPFAIQA 244
+V ++TG + G+G G+ ++ G + +T R K+K EA ++ + +Q
Sbjct: 7 KVVIITGGSSGMGKGMATRFAKE--GARVVITGRTKEKLEEAKLEIEQFPGQI-LTVQM 62
Score = 36.3 bits (85), Expect = 0.015
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 6/50 (12%)
Query: 320 GWPDSA-YAVSKIGVNLLTRIYQKKFDCELGNQDKV-INAVHPGYVATNM 367
P A +K GV +T+ E G + + +NA+ PG +
Sbjct: 149 AGPGVIHSAAAKAGVLAMTKTLAV----EWGRKYGIRVNAIAPGPIERTG 194
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase,
PSI-2, P structure initiative; 2.30A {Agrobacterium
tumefaciens str}
Length = 259
Score = 37.9 bits (89), Expect = 0.004
Identities = 45/228 (19%), Positives = 64/228 (28%), Gaps = 89/228 (39%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY----IYLTARD---------KKKGAEAVQVLKD 233
R VV GA + +G ++ G Y A + +K G A+ + D
Sbjct: 9 RTIVVAGAGRDIGRACAIRFAQE--GANVVLTYNGAAEGAATAVAEIEKLGRSALAIKAD 66
Query: 234 --RASTVPFAIQA--------------------------------EKTILTNYLGLVRTC 259
A+ V AI A + + N L T
Sbjct: 67 LTNAAEVEAAISAAADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTA 126
Query: 260 VFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAK 319
P + + +V SS AG
Sbjct: 127 KTALPKMAKGGAIVTFSSQAGRDGGGPGA------------------------------- 155
Query: 320 GWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
AYA SK V TR K E+G + +V NAV PG ++T
Sbjct: 156 ----LAYATSKGAVMTFTRGLAK----EVGPKIRV-NAVCPGMISTTF 194
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold,
peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA;
1.84A {Homo sapiens} PDB: 4fc6_A*
Length = 277
Score = 38.0 bits (89), Expect = 0.005
Identities = 16/101 (15%), Positives = 30/101 (29%), Gaps = 21/101 (20%)
Query: 145 PYPPARDTYLHPPSGASMWSRQGVDGPLSITGIVNGSVDPSERVAVVTGANKGLGFGIVK 204
P D L P+ ++ ++ +VA +TG G+GF I +
Sbjct: 4 PPDVEGDDCL--PAYRHLFCP----------DLLRD------KVAFITGGGSGIGFRIAE 45
Query: 205 SLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPFAIQA 244
G + +R + A + L +
Sbjct: 46 IFMRH--GCHTVIASRSLPRVLTAARKLAGATGRRCLPLSM 84
Score = 30.3 bits (69), Expect = 1.2
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 324 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
+K V+ +TR E G Q+ +N++ PG ++
Sbjct: 175 VHAGSAKAAVDAMTRHLAV----EWGPQNIRVNSLAPGPISGTE 214
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human
hydroxysteroid dehydrogenase like 2, SDHL2, STR
genomics, structural genomics consortium; HET: NAP;
2.25A {Homo sapiens}
Length = 346
Score = 38.3 bits (89), Expect = 0.005
Identities = 42/226 (18%), Positives = 72/226 (31%), Gaps = 46/226 (20%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQ----------------FDGYIYLTARDKKKG---AEA 227
+TGA++G+G I + G IY A + + A
Sbjct: 46 CTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALP 105
Query: 228 VQV-LKDRASTVPFAIQAEKT-----ILTNYLGLVRTCVFLFPLLRRHARV--VNLSSSA 279
V ++D +A K IL N + L +R + VN
Sbjct: 106 CIVDVRDEQQISAAVEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRG-- 163
Query: 280 GHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGW--PDSAYAVSKIGVNLLT 337
T L K + L++ LNI+ P ++ W AY ++K G+++
Sbjct: 164 ------TYLASKACIPYLKKSKVAHILNIS---PPLNLNPVWFKQHCAYTIAKYGMSMYV 214
Query: 338 RIYQKKFDCELGNQDKVINAVHPGY-VATNMSSFMGNVNIFDDSST 382
+ E + +NA+ P + T +G I
Sbjct: 215 LGMAE----EFK-GEIAVNALWPKTAIHTAAMDMLGGPGIESQCRK 255
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics,
oxidoreductase, S structural genomics center for
infectious disease, ssgcid; 2.09A {Bartonella henselae}
PDB: 3enn_A 3emk_A
Length = 266
Score = 37.5 bits (88), Expect = 0.005
Identities = 39/227 (17%), Positives = 69/227 (30%), Gaps = 90/227 (39%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPFAI--- 242
R A+VTGA G+G I + Q G + L + K E L +
Sbjct: 28 RKALVTGATGGIGEAIARCFHAQ--GAIVGLHGTREDKLKEIAADLGKDVFVFSANLSDR 85
Query: 243 --------QAEKT-----ILTNYLGLVR--------------------TCVFLF------ 263
AE+ IL N G+ R T
Sbjct: 86 KSIKQLAEVAEREMEGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIH 145
Query: 264 PLLR-RHARVVNLSSSAGHLSQI--TNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKG 320
++R R+ R++N++S G + TN
Sbjct: 146 SMMRRRYGRIINITSIVGVVGNPGQTN--------------------------------- 172
Query: 321 WPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
Y +K G+ ++ + E+ +++ +N + PG++ + M
Sbjct: 173 -----YCAAKAGLIGFSKALAQ----EIASRNITVNCIAPGFIKSAM 210
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics,
3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus
thuringiensis serovar kurstakorganism_taxid}
Length = 264
Score = 37.5 bits (88), Expect = 0.005
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQ 229
R A++T KGLG + + L + GY + +T E ++
Sbjct: 8 RHALITAGTKGLGKQVTEKLLAK--GYSVTVTYHSDTTAMETMK 49
Score = 29.1 bits (66), Expect = 3.1
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 4/42 (9%)
Query: 326 YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
+A +K+G+ LT+ E N V PG + M
Sbjct: 161 FAAAKVGLVSLTKTVAY----EEAEYGITANMVCPGDIIGEM 198
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding,
structural genomics, PSI-biology; HET: MSE; 2.10A
{Sinorhizobium meliloti} PDB: 1k2w_A
Length = 259
Score = 37.1 bits (87), Expect = 0.008
Identities = 10/53 (18%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTV 238
+ A++TG+ +G+G ++ +G + + D ++ +A + A V
Sbjct: 9 KSALITGSARGIGRAFAEAYVR--EGATVAIADIDIERARQAAAEIGPAAYAV 59
Score = 36.7 bits (86), Expect = 0.010
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Query: 324 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
+ Y +K V LT+ +L +NA+ PG V
Sbjct: 153 AIYCATKAAVISLTQSAGL----DLIKHRINVNAIAPGVVDGEH 192
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold,
oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Length = 266
Score = 37.2 bits (87), Expect = 0.008
Identities = 24/136 (17%), Positives = 47/136 (34%), Gaps = 43/136 (31%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKK----GAEAVQVLK----DRAST 237
++ V+TGA+ G+G I + E+ G+ + L AR ++ + D+ +
Sbjct: 17 KLVVITGASSGIGEAIARRFSEE--GHPLLLLARRVERLKALNLPNTLCAQVDVTDKYTF 74
Query: 238 VPFAIQA------------------------------EKTILTNYLGLVRTCVFLFPLL- 266
+A ++ N LGL+ + +
Sbjct: 75 DTAITRAEKIYGPADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMK 134
Query: 267 -RRHARVVNLSSSAGH 281
R ++N+SS AG
Sbjct: 135 ARNCGTIINISSIAGK 150
Score = 29.1 bits (66), Expect = 2.8
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 416 EKTILTNYLGLVRTCVFLFPLL--RRHARVVNLSSSAGH 452
++ N LGL+ + + R ++N+SS AG
Sbjct: 112 QRMFDVNVLGLLNGMQAVLAPMKARNCGTIINISSIAGK 150
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A
{Klebsiella pneumoniae} SCOP: c.2.1.2
Length = 256
Score = 37.1 bits (87), Expect = 0.008
Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 186 ERVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKD 233
++VA+VTGA +G+G I L + DG+ + + + +
Sbjct: 2 KKVALVTGAGQGIGKAIALRLVK--DGFAVAIADYNDATAKAVASEINQ 48
Score = 32.9 bits (76), Expect = 0.17
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 324 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
+ Y+ SK V LT+ + +L +N PG V T M
Sbjct: 150 AVYSSSKFAVRGLTQTAAR----DLAPLGITVNGYCPGIVKTPM 189
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain
dehydrogenase/reductase, steroid metabolism, LIP
metabolism, structural genomics; HET: NAD; 2.00A {Homo
sapiens}
Length = 264
Score = 37.2 bits (87), Expect = 0.009
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKD 233
+A+VTGA G+G + L + G + D+ E V++L
Sbjct: 8 ALALVTGAGSGIGRAVSVRLAGE--GATVAACDLDRAAAQETVRLLGG 53
Score = 29.8 bits (68), Expect = 1.9
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 326 YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
YA SK GV LT+ + ELG N+V PG++AT M
Sbjct: 165 YAASKAGVIGLTQTAAR----ELGRHGIRCNSVLPGFIATPM 202
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain
oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE
MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Length = 248
Score = 36.7 bits (86), Expect = 0.009
Identities = 10/59 (16%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPFAIQA 244
+V++VTG+ +G+G I + L G + +T ++ + + ++ ++
Sbjct: 8 KVSLVTGSTRGIGRAIAEKLASA--GSTVIITGTSGERAKAVAEEIANKYGVKAHGVEM 64
Score = 28.2 bits (64), Expect = 4.6
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 326 YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
Y+ +K G+ T+ K EL ++ ++NAV PG++ T+M
Sbjct: 157 YSTTKAGLIGFTKSLAK----ELAPRNVLVNAVAPGFIETDM 194
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty
acid synthesis, short-chain dehydrogenases/reductases,
structural genomics; HET: ADE; 1.90A {Homo sapiens}
SCOP: c.2.1.2
Length = 303
Score = 36.9 bits (86), Expect = 0.010
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRAST 237
+VA+VTG G+G IVK L E G + + +R ++ A L+
Sbjct: 19 QVAIVTGGATGIGKAIVKELLEL--GSNVVIASRKLERLKSAADELQANLPP 68
Score = 32.6 bits (75), Expect = 0.25
Identities = 14/65 (21%), Positives = 22/65 (33%), Gaps = 10/65 (15%)
Query: 304 RSLNITKEHPRAHVAKGWPDSA-YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGY 362
+NI G+P + ++ GV LT+ E IN V PG
Sbjct: 153 SIVNII-----VPTKAGFPLAVHSGAARAGVYNLTKSLAL----EWACSGIRINCVAPGV 203
Query: 363 VATNM 367
+ +
Sbjct: 204 IYSQT 208
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase,
lactamase inhibitor, AN biosynthesis, NADPH,
oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces
clavuligerus} PDB: 2jap_A*
Length = 247
Score = 36.7 bits (86), Expect = 0.011
Identities = 32/141 (22%), Positives = 47/141 (33%), Gaps = 48/141 (34%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKK--------GAEAVQVL------ 231
+VA++TGA+ G+G ++L + G + + AR +K A +V
Sbjct: 8 KVALITGASSGIGEATARALAAE--GAAVAIAARRVEKLRALGDELTAAGAKVHVLELDV 65
Query: 232 KDRASTVPFAIQA------------------------------EKTILTNYLGLVRTCVF 261
DR + I TN LGL+
Sbjct: 66 ADRQGVDAAVASTVEALGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRA 125
Query: 262 LFP-LLRRHARVVNLSSSAGH 281
P LLR VV +SS AG
Sbjct: 126 ALPHLLRSKGTVVQMSSIAGR 146
Score = 32.1 bits (74), Expect = 0.32
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 416 EKTILTNYLGLVRTCVFLFP-LLRRHARVVNLSSSAGH 452
+ I TN LGL+ P LLR VV +SS AG
Sbjct: 109 TRMIDTNLLGLMYMTRAALPHLLRSKGTVVQMSSIAGR 146
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein,
NAD(P)-binding rossmann fold, csgid, oxidoreductase;
1.95A {Francisella tularensis subsp}
Length = 247
Score = 36.3 bits (85), Expect = 0.014
Identities = 41/230 (17%), Positives = 76/230 (33%), Gaps = 93/230 (40%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLK------------- 232
+VA+VTGA++G+GF + +L + G + TA + + +K
Sbjct: 6 KVALVTGASRGIGFEVAHALASK--GATVVGTATSQASAEKFENSMKEKGFKARGLVLNI 63
Query: 233 -DRASTVPFAIQAEKT-----ILTNYLGLVR--------------------TCVFLF--- 263
D S F + + IL N G+ R + +F
Sbjct: 64 SDIESIQNFFAEIKAENLAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKE 123
Query: 264 ---PLLR-RHARVVNLSSSAGHLSQI--TNLELKKRLRQLREPVSLRSLNITKEHPRAHV 317
+++ R R++++ S G TN
Sbjct: 124 CVRGMMKKRWGRIISIGSVVGSAGNPGQTN------------------------------ 153
Query: 318 AKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
Y +K GV ++ E+ +++ +N V PG++AT+M
Sbjct: 154 --------YCAAKAGVIGFSKSLAY----EVASRNITVNVVAPGFIATDM 191
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics,
southeast collaboratory for structural genomics, secsg,
PSI; 1.90A {Clostridium thermocellum}
Length = 247
Score = 36.3 bits (85), Expect = 0.015
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAV 228
+ A+VTG+++GLG I L G I L +A
Sbjct: 6 KTAIVTGSSRGLGKAIAWKLGNM--GANIVLNGSPASTSLDAT 46
Score = 28.6 bits (65), Expect = 3.9
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 326 YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
YA SK G+ T+ K E + NAV PG + T+M
Sbjct: 155 YAASKAGLIGFTKSIAK----EFAAKGIYCNAVAPGIIKTDM 192
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 36.4 bits (85), Expect = 0.016
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKD 233
+VA+VTGA +G+G I K L + + +R +K V +K
Sbjct: 45 KVALVTGAGRGIGREIAKMLAKS--VSHVICISRTQKSCDSVVDEIKS 90
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: NAD; 2.10A {Mycobacterium
abscessus}
Length = 281
Score = 36.3 bits (85), Expect = 0.016
Identities = 18/74 (24%), Positives = 26/74 (35%), Gaps = 4/74 (5%)
Query: 324 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMGNVNIFDDSSTF 383
++Y SK GV LT+ +L +NAV PG + T M+
Sbjct: 169 ASYVSSKWGVIGLTKCAAH----DLVGYGITVNAVAPGNIETPMTHNDFVFGTMRPDLEK 224
Query: 384 NAFERVISHFLIGQ 397
+ V S F
Sbjct: 225 PTLKDVESVFASLH 238
>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A
{Pseudomonas aeruginosa}
Length = 272
Score = 36.1 bits (84), Expect = 0.017
Identities = 28/143 (19%), Positives = 43/143 (30%), Gaps = 50/143 (34%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPF----- 240
+TGA G G + E G+ + LT R +++ L + +P
Sbjct: 22 STLFITGATSGFGEACARRFAEA--GWSLVLTGRREERLQALAGELSAKTRVLPLTLDVR 79
Query: 241 ---AIQA------------------------------------EKTILTNYLGLVRTCVF 261
A+ A + + TN GL+ +
Sbjct: 80 DRAAMSAAVDNLPEEFATLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRL 139
Query: 262 LFPLLRRHAR---VVNLSSSAGH 281
L P L H +VNL S AG
Sbjct: 140 LLPRLIAHGAGASIVNLGSVAGK 162
Score = 30.3 bits (69), Expect = 1.1
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 416 EKTILTNYLGLVRTCVFLFPLLRRHAR---VVNLSSSAGH 452
+ + TN GL+ + L P L H +VNL S AG
Sbjct: 123 DTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGSVAGK 162
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A
non-pathogenic dehydrogenase, structural genomics; 1.95A
{Mycobacterium smegmatis}
Length = 266
Score = 36.0 bits (84), Expect = 0.017
Identities = 15/44 (34%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Query: 324 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
S YA +K GV LTR E INAV P
Sbjct: 172 SHYAAAKAGVMALTRCSAI----EAVEFGVRINAVSPSIARHKF 211
Score = 35.6 bits (83), Expect = 0.023
Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 4/60 (6%)
Query: 187 RVAVVTGA-NKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPFAIQA 244
+V +VT A G+G + + G + ++ +++ E L D A+
Sbjct: 23 KVVLVTAAAGTGIGSTTARRALLE--GADVVISDYHERRLGETRDQLADLGLGRVEAVVC 80
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase,
oxidoreductase, structural genomics; 2.10A {Burkholderia
pseudomallei 1710B}
Length = 269
Score = 35.6 bits (83), Expect = 0.026
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 185 SERVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQ 229
++RVA VTG GLG I + L + G + ++ ++
Sbjct: 24 AKRVAFVTGGMGGLGAAISRRLHDA--GMAVAVSHSERNDHVSTWL 67
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid,
3-ketoacyl-(acyl-carrier- protein) reductase,
oxidoreductase, structural genomics; 2.05A {Burkholderia
pseudomallei}
Length = 270
Score = 35.6 bits (83), Expect = 0.026
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKD 233
+VA+VTGA++G+G I L + G + TA + K
Sbjct: 29 QVAIVTGASRGIGRAIALELARR--GAMVIGTATTEAGAEGIGAAFKQ 74
>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein;
structural genomics, ssgcid; 1.70A {Mycobacterium
smegmatis} PDB: 3lls_A 3q6i_A* 3m1l_A
Length = 454
Score = 35.7 bits (83), Expect = 0.029
Identities = 45/229 (19%), Positives = 64/229 (27%), Gaps = 93/229 (40%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARD----------KKKGAEAVQV-LKDR 234
+VAVVTGA +G+G I + G + D K G A+ + +
Sbjct: 214 KVAVVTGAARGIGATIAEVFARD--GATVVAIDVDGAAEDLKRVADKVGGTALTLDVTAD 271
Query: 235 ASTVPFAIQAEKT------IL-------------------------TNYLGLVRTCVFLF 263
+ + IL N L R L
Sbjct: 272 DAVDKITAHVTEHHGGKVDILVNNAGITRDKLLANMDEKRWDAVIAVNLLAPQRLTEGLV 331
Query: 264 P--LLRRHARVVNLSS---SAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVA 318
+ RV+ LSS AG+ Q TN
Sbjct: 332 GNGTIGEGGRVIGLSSMAGIAGNRGQ-TN------------------------------- 359
Query: 319 KGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
YA +K G+ L L ++ INAV PG++ T M
Sbjct: 360 -------YATTKAGMIGLAEALAP----VLADKGITINAVAPGFIETKM 397
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.08A {Sinorhizobium meliloti}
Length = 264
Score = 35.2 bits (82), Expect = 0.034
Identities = 30/142 (21%), Positives = 50/142 (35%), Gaps = 49/142 (34%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDK-----------KKGAEAVQV---L 231
+V ++TGA+ G+G GI + L G I L AR + G A+ +
Sbjct: 5 KVILITGASGGIGEGIARELGVA--GAKILLGARRQARIEAIATEIRDAGGTALAQVLDV 62
Query: 232 KDRASTVPFAIQA------------------------------EKTILTNYLGLVRTCVF 261
DR S FA A E+ I N G++
Sbjct: 63 TDRHSVAAFAQAAVDTWGRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGA 122
Query: 262 LFPLL--RRHARVVNLSSSAGH 281
+ P++ +R +++N+ S
Sbjct: 123 VLPIMEAQRSGQIINIGSIGAL 144
Score = 29.4 bits (67), Expect = 2.0
Identities = 8/39 (20%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 416 EKTILTNYLGLVRTCVFLFPLL--RRHARVVNLSSSAGH 452
E+ I N G++ + P++ +R +++N+ S
Sbjct: 106 ERMIDVNIKGVLWGIGAVLPIMEAQRSGQIINIGSIGAL 144
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase,
oxidoreductase, structural genomics; HET: P4C; 2.25A
{Burkholderia pseudomallei 1710B}
Length = 256
Score = 35.2 bits (82), Expect = 0.036
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 3/44 (6%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQ 229
R+A VTG G+G I + L + G+ +
Sbjct: 14 RIAYVTGGMGGIGTSICQRLHKD--GFRVVAGCGPNSPRRVKWL 55
>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition,
oxidoreductase; HET: NAD; 2.00A {Brevibacterium
saccharolyticum}
Length = 258
Score = 34.8 bits (81), Expect = 0.037
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 324 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
SAY+ +K V LT+ + EL + +NA PG V T M
Sbjct: 152 SAYSTTKFAVRGLTQAAAQ----ELAPKGHTVNAYAPGIVGTGM 191
Score = 34.8 bits (81), Expect = 0.045
Identities = 14/50 (28%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY---IYLTARDKKKGAEAVQVLKD 233
+VA+VTG +G+G GI + L DG+ + + +++ AE +++++
Sbjct: 3 KVAMVTGGAQGIGRGISEKLAA--DGFDIAVADLPQQEEQAAETIKLIEA 50
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold,
beta-alpha-beta motifs, open twisted sheet, A NADP,
oxidoreductase; 2.30A {Cladosporium herbarum} PDB:
3gdf_A
Length = 267
Score = 34.1 bits (79), Expect = 0.069
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 324 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM 371
++Y V+K G + R E + +V N++ PGY+ T +S F+
Sbjct: 173 TSYNVAKAGCIHMARSLAN----EWRDFARV-NSISPGYIDTGLSDFV 215
Score = 32.1 bits (74), Expect = 0.32
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 187 RVAVVTGA--NKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAV 228
+V VVTGA KG+G + E G + +T + +GAE
Sbjct: 21 KVVVVTGASGPKGMGIEAARGCAEM--GAAVAITYASRAQGAEEN 63
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold,
oxoacyl-ACP reductase, NADP binding, fatty AC
biosynthsis, oxidoreductase; HET: NAP; 2.38A
{Synechococcus elongatus} PDB: 4dml_A*
Length = 269
Score = 34.1 bits (79), Expect = 0.072
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAV 228
R+A+VTGA++G+G I L G + + A+ V
Sbjct: 29 RIALVTGASRGIGRAIALELAAA--GAKVAVNYASSAGAADEV 69
Score = 29.1 bits (66), Expect = 2.8
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Query: 326 YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
Y+ +K GV LT+ K EL ++ +NAV PG++AT+M
Sbjct: 178 YSAAKAGVIGLTKTVAK----ELASRGITVNAVAPGFIATDM 215
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold,
oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB:
3afm_A*
Length = 258
Score = 34.1 bits (79), Expect = 0.074
Identities = 8/44 (18%), Positives = 14/44 (31%), Gaps = 4/44 (9%)
Query: 324 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
Y +K ++ + + + N V PG V T
Sbjct: 162 GLYGAAKAFLHNVHKNWVD----FHTKDGVRFNIVSPGTVDTAF 201
Score = 32.9 bits (76), Expect = 0.17
Identities = 7/43 (16%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAV 228
+ ++TG+++G+G + G + L R +
Sbjct: 8 KRVLITGSSQGIGLATARLFARA--GAKVGLHGRKAPANIDET 48
>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann
fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus}
SCOP: c.2.1.2 PDB: 2cdh_G
Length = 244
Score = 33.6 bits (78), Expect = 0.090
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAV 228
V VVTGA++G+G I SL + G + + K AE V
Sbjct: 2 PVVVVTGASRGIGKAIALSLGKA--GCKVLVNYARSAKAAEEV 42
Score = 29.4 bits (67), Expect = 2.5
Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 326 YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
YA +K GV ++ + E +++ +N V PG++A++M
Sbjct: 151 YAAAKAGVIGFSKTAAR----EGASRNINVNVVCPGFIASDM 188
>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain
oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A
{Saccharomyces cerevisiae}
Length = 287
Score = 33.8 bits (78), Expect = 0.097
Identities = 23/146 (15%), Positives = 39/146 (26%), Gaps = 51/146 (34%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY--IYLTAR-------------DKKKGAEAVQV- 230
+ ++TGA+ G+G E +G + L AR + A+
Sbjct: 34 KTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQ 93
Query: 231 --LKDRASTVPFAIQA-------------------------------EKTILTNYLGLVR 257
+ PF + TN L+
Sbjct: 94 LDITQAEKIKPFIENLPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALIN 153
Query: 258 TCVFLFPLL--RRHARVVNLSSSAGH 281
+ P+ + +VNL S AG
Sbjct: 154 ITQAVLPIFQAKNSGDIVNLGSIAGR 179
Score = 31.1 bits (71), Expect = 0.65
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 416 EKTILTNYLGLVRTCVFLFPLL--RRHARVVNLSSSAGH 452
+ TN L+ + P+ + +VNL S AG
Sbjct: 141 QDVFDTNVTALINITQAVLPIFQAKNSGDIVNLGSIAGR 179
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural
genomics, structural genomics consortium,
oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP:
c.2.1.2
Length = 279
Score = 33.8 bits (78), Expect = 0.10
Identities = 34/234 (14%), Positives = 60/234 (25%), Gaps = 89/234 (38%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGYI-YLTARDKKKGAEAVQVLKDRASTVPF----- 240
R+A+VTGA+ G+G + ++L +Q G AR E K
Sbjct: 33 RLALVTGASGGIGAAVARALVQQ--GLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRC 90
Query: 241 ------AIQA-----------------------------------EKTILTNYLGLVRTC 259
I + + N L L
Sbjct: 91 DLSNEEDILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICT 150
Query: 260 VFLFPLLRRHAR----VVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRA 315
+ ++ ++N++S +GH
Sbjct: 151 REAYQSMKERNVDDGHIININSMSGH--------------------------RVLPLSVT 184
Query: 316 HVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSS 369
H Y+ +K V LT +++ E + + PG V T +
Sbjct: 185 HF--------YSATKYAVTALTEGLRQELR-EAQTHIRATC-ISPGVVETQFAF 228
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.34A {Sinorhizobium meliloti}
Length = 257
Score = 33.7 bits (78), Expect = 0.10
Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Query: 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRASTVP 239
RV +VTGA+ GLG + + L ++ + G E L
Sbjct: 4 QLKSRVFIVTGASSGLGAAVTRMLAQE-GATVLGLDLKPPAGEEPAAELGAAVRFRN 59
>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural
genomics, southea collaboratory for structural genomics,
secsg; 1.91A {Thermus thermophilus HB8}
Length = 245
Score = 33.2 bits (77), Expect = 0.12
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAV 228
R A++TGA++G+G I L E G+ + + ++ AE V
Sbjct: 2 RKALITGASRGIGRAIALRLAED--GFALAIHYGQNREKAEEV 42
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH,
2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural
genomics, structural genomi consortium; HET: NAD GOL;
1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A*
1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Length = 265
Score = 33.4 bits (77), Expect = 0.12
Identities = 14/53 (26%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRASTVP 239
VAV+TG GLG + L Q L G + L + P
Sbjct: 13 LVAVITGGASGLGLATAERLVGQ-GASAVLLDLPNSGGEAQAKKLGNNCVFAP 64
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl
carrier protein) reductase, short-chain
dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}
Length = 246
Score = 33.2 bits (77), Expect = 0.14
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAV 228
+VA+VTGA++G+G I L +Q G + + ++ A V
Sbjct: 5 KVALVTGASRGIGRAIAIDLAKQ--GANVVVNYAGNEQKANEV 45
Score = 28.6 bits (65), Expect = 3.9
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Query: 326 YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
Y +K GV LT+ K EL +++ +NA+ PG++AT+M
Sbjct: 154 YVAAKAGVIGLTKTSAK----ELASRNITVNAIAPGFIATDM 191
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted
open sheet structure, oxidoreductase; 1.90A
{Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4
PDB: 1lua_A*
Length = 287
Score = 33.3 bits (76), Expect = 0.14
Identities = 11/62 (17%), Positives = 16/62 (25%), Gaps = 1/62 (1%)
Query: 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRASTVPF 240
+ AVV +G L + + L R K A + R
Sbjct: 114 GGSVKGKKAVVLAGTGPVGMRSAALLAGE-GAEVVLCGRKLDKAQAAADSVNKRFKVNVT 172
Query: 241 AI 242
A
Sbjct: 173 AA 174
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
csgid, center for structural genomics O infectious
diseases; 1.90A {Staphylococcus aureus subsp} PDB:
3sj7_A*
Length = 246
Score = 33.2 bits (77), Expect = 0.15
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAV 228
+ A+VTGA++G+G I L E+ GY + + K+ AEAV
Sbjct: 5 KSALVTGASRGIGRSIALQLAEE--GYNVAVNYAGSKEKAEAV 45
Score = 28.6 bits (65), Expect = 4.5
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 326 YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
Y +K GV LT+ + EL ++ +NAV PG++ ++M
Sbjct: 154 YVATKAGVIGLTKSAAR----ELASRGITVNAVAPGFIVSDM 191
>2fyg_A Replicase polyprotein 1AB; SARS virus polyprotein non-structural
protein NSP10, zinc FI viral protein; 1.80A {Sars
coronavirus} SCOP: g.86.1.1 PDB: 2xyq_B* 2xyr_B* 2xyv_B*
Length = 128
Score = 31.1 bits (70), Expect = 0.30
Identities = 19/68 (27%), Positives = 23/68 (33%), Gaps = 7/68 (10%)
Query: 65 AF-VSPVNAFASPVNAFASPLRNAVLQSEAGDGNGSNIHVHIHMNESQGMHWGTS----- 118
AF V P A+ + + P+ N V G G I V N Q G S
Sbjct: 14 AFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYC 73
Query: 119 -SHIPDPA 125
HI P
Sbjct: 74 RCHIDHPN 81
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas
mycobacterium avium, structural genomics; 2.00A
{Mycobacterium avium}
Length = 281
Score = 32.3 bits (74), Expect = 0.31
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRASTVP 239
A+V+G GLG V+ L + + +KG L +RA V
Sbjct: 31 ASAIVSGGAGGLGEATVRRLHAD-GLGVVIADLAAEKGKALADELGNRAEFVS 82
Score = 31.1 bits (71), Expect = 0.80
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 324 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM 371
+AYA +K GV LT + +L + +N + PG + T + +
Sbjct: 185 TAYAAAKAGVIGLTIAAAR----DLSSAGIRVNTIAPGTMKTPIMESV 228
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty
acid, structural genomi structural genomics/proteomics
initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus}
SCOP: c.2.1.2
Length = 242
Score = 31.8 bits (73), Expect = 0.39
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 186 ERVAVVTGANKGLGFGIVKSLCEQ 209
ER A+VTG GLG +L +
Sbjct: 2 ERSALVTGGASGLGRAAALALKAR 25
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.50
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 19/44 (43%)
Query: 291 KKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVN 334
K+ L++L+ SL+ A DSA A++ +
Sbjct: 19 KQALKKLQA--SLK--------LYA------DDSAPALA---IK 43
Score = 28.8 bits (63), Expect = 2.5
Identities = 5/31 (16%), Positives = 11/31 (35%), Gaps = 12/31 (38%)
Query: 38 SRIK-YWLSPSSPPVVTPVTTFSSSPVNAFV 67
+ +K Y + S P + + A +
Sbjct: 27 ASLKLY--ADDSAPALA---------IKATM 46
>3r24_B Non-structural protein 10 and non-structural PROT;
methyltransferase, zinc-finger, transferase, viral
protein; HET: SAM; 2.00A {Sars coronavirus} PDB: 2g9t_A
2ga6_A
Length = 155
Score = 30.8 bits (69), Expect = 0.51
Identities = 19/68 (27%), Positives = 23/68 (33%), Gaps = 7/68 (10%)
Query: 65 AF-VSPVNAFASPVNAFASPLRNAVLQSEAGDGNGSNIHVHIHMNESQGMHWGTS----- 118
AF V P A+ + + P+ N V G G I V N Q G S
Sbjct: 21 AFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYC 80
Query: 119 -SHIPDPA 125
HI P
Sbjct: 81 RCHIDHPN 88
>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 1.85A {Mycobacterium ulcerans}
Length = 257
Score = 30.7 bits (70), Expect = 0.84
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 179 NGSVDPSERVAVVTGANKGLGFGIVKSLCEQ 209
GS++ + VAVVTG GLG K L +
Sbjct: 2 PGSMEIRDAVAVVTGGASGLGLATTKRLLDA 32
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus
interaction, metal-binding, nucleus, receptor,
transcription, transcription regulation, zinc-FIN
activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB:
3dzu_A* 3e00_A*
Length = 467
Score = 30.5 bits (68), Expect = 1.2
Identities = 20/97 (20%), Positives = 32/97 (32%), Gaps = 1/97 (1%)
Query: 45 SPSSPPVVTPVTTFSSSPVNAFVSPVNAFASPVNAFA-SPLRNAVLQSEAGDGNGSNIHV 103
SP + + SSP+N P + +SP+ + S L G S+
Sbjct: 45 GIGSPGQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMN 104
Query: 104 HIHMNESQGMHWGTSSHIPDPASSYPPMVPMPDHTYA 140
+ +E G + + PA M H A
Sbjct: 105 PVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICA 141
Score = 29.3 bits (65), Expect = 3.6
Identities = 13/104 (12%), Positives = 27/104 (25%), Gaps = 2/104 (1%)
Query: 45 SPSSPPVVTPVTTFSSSPVNAFVSPVNAFASPVNAFASPLRNAVLQSEAGDGNGSNIHVH 104
+ P + P SP++ +SP+N P V+ S G + S
Sbjct: 31 GSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMGPPFS--VISSPMGPHSMSVPTTP 88
Query: 105 IHMNESQGMHWGTSSHIPDPASSYPPMVPMPDHTYAQNPYPYPP 148
+ + + + P + +
Sbjct: 89 TLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNM 132
>1so7_A Sialidase 2; neuraminidase, ganglioside, sugar-induced form; 1.49A
{Homo sapiens} SCOP: b.68.1.1 PDB: 1snt_A 1vcu_A*
2f0z_A* 2f10_A* 2f11_A* 2f12_A* 2f13_A* 2f28_A 2f29_A*
2f24_A 2f25_A* 2f26_A 2f27_A*
Length = 382
Score = 30.3 bits (67), Expect = 1.5
Identities = 10/92 (10%), Positives = 26/92 (28%), Gaps = 3/92 (3%)
Query: 45 SPSSPPVVTPVTTFSSSPVNAFVSPVNAFASPVNAFASPLRNAVLQSEAGDGNGSNIHVH 104
+V + V +F SP + SP + + +++ +
Sbjct: 256 DFQESQLVKKLVEPPPQGCQG---SVISFPSPRSGPGSPAQWLLYTHPTHSWQRADLGAY 312
Query: 105 IHMNESQGMHWGTSSHIPDPASSYPPMVPMPD 136
++ W + + +Y + M
Sbjct: 313 LNPRPPAPEAWSEPVLLAKGSCAYSDLQSMGT 344
>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2,
beta-oxidation, peroxisome, SDR, steroid biosynthesis,
oxidoreductase, NADP; HET: NAI; 2.38A {Rattus
norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*
Length = 319
Score = 30.0 bits (68), Expect = 1.7
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 187 RVAVVTGANKGLG 199
RV +VTGA GLG
Sbjct: 10 RVVLVTGAGGGLG 22
>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415;
rossmann fold, hot-DOG fold, hydratase 2 motif,
peroxisomes, oxidoreductase; 2.15A {Drosophila
melanogaster}
Length = 613
Score = 30.2 bits (68), Expect = 1.9
Identities = 11/13 (84%), Positives = 11/13 (84%)
Query: 187 RVAVVTGANKGLG 199
RVAVVTGA GLG
Sbjct: 20 RVAVVTGAGAGLG 32
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse,
oxidoreductase; 2.10A {Chromohalobacter salexigens}
Length = 267
Score = 29.6 bits (67), Expect = 2.0
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 322 PDSAYAVSKIGVNLLTRIYQKKFD 345
PDS Y +SK L +Y KFD
Sbjct: 131 PDSLYGLSKCFGEDLASLYYHKFD 154
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis; 1.80A {Mycobacterium avium}
Length = 322
Score = 29.6 bits (67), Expect = 2.1
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 187 RVAVVTGANKGLG 199
RV +VTGA G+G
Sbjct: 28 RVVIVTGAGGGIG 40
>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation,
peroxisome, SDR, oxido; 2.22A {Candida tropicalis}
Length = 604
Score = 29.7 bits (67), Expect = 2.2
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 187 RVAVVTGANKGLG 199
+V ++TGA GLG
Sbjct: 9 KVVIITGAGGGLG 21
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos
taurus} SCOP: i.9.1.1
Length = 390
Score = 29.4 bits (65), Expect = 2.5
Identities = 14/105 (13%), Positives = 27/105 (25%)
Query: 44 LSPSSPPVVTPVTTFSSSPVNAFVSPVNAFASPVNAFASPLRNAVLQSEAGDGNGSNIHV 103
+S + PV + + + + + + G G
Sbjct: 210 MSTITGPVPREFKSQLQEAPLEWKALLEMQQTKMVLETFGGDGHARGDSVSQGTGLAPGS 269
Query: 104 HIHMNESQGMHWGTSSHIPDPASSYPPMVPMPDHTYAQNPYPYPP 148
S + S+ P + ++ P P P NP P
Sbjct: 270 PRKPGTSSIGNVNPGSYGPGSSGTWNPGRPEPGSAGTWNPGRPEP 314
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 29.7 bits (66), Expect = 3.2
Identities = 34/149 (22%), Positives = 47/149 (31%), Gaps = 32/149 (21%)
Query: 45 SPSSP------PVVTPVTTFSSSPVNAFVSPVNAFASPVNAFASPLRNAVLQSEAGDGNG 98
SP+SP P +P T+ S SP + SP + SP + SP
Sbjct: 1543 SPTSPTYSPTSPAYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSP--------------T 1587
Query: 99 SNIHVHIHMNESQG-MHWGTSSHIPDPAS-SYPPMVPMPDHTYAQNPYPYPPARDTYLHP 156
S + + S + +S P S SY P P +Y+ Y P P
Sbjct: 1588 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP----SYSPTSPSYSPT-----SP 1638
Query: 157 PSGASMWSRQGVDGPLSITGIVNGSVDPS 185
+ S S T PS
Sbjct: 1639 SYSPTSPSYSPTSPSYSPTSPAYSPTSPS 1667
>2w20_A Sialidase A; secreted, cell WALL, hydrolase, glycosidase,
neuraminidase, peptidoglycan-anchor; HET: MES; 1.49A
{Streptococcus pneumoniae} PDB: 2vvz_A* 3h71_A 3h72_A*
3h73_A* 2ya8_A* 2ya5_A* 2ya6_A* 2ya7_A* 2ya4_A*
Length = 471
Score = 29.3 bits (64), Expect = 3.4
Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Query: 79 AFASPLRNAVLQSEAGDGNGSNIHVHIH-MNESQGMHWGTSSHIPDPASSYPPMVPMPDH 137
+ ++ S AG N VH+ + E+ + W + I +Y + + +
Sbjct: 382 HTMHEGKEYIILSNAGGPKRENGMVHLARVEENGELTWLKHNPIQKGEFAYNSLQELGNG 441
Query: 138 TYA 140
Y
Sbjct: 442 EYG 444
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding,
oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB:
3rfv_A* 3rfx_A*
Length = 267
Score = 28.9 bits (65), Expect = 3.4
Identities = 12/38 (31%), Positives = 15/38 (39%), Gaps = 6/38 (15%)
Query: 308 ITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFD 345
+ + P PD Y VSK L R+Y KF
Sbjct: 124 LGPDVPAR------PDGLYGVSKCFGENLARMYFDKFG 155
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A
1r70_B 3cm9_A
Length = 475
Score = 28.0 bits (62), Expect = 7.1
Identities = 18/119 (15%), Positives = 27/119 (22%), Gaps = 12/119 (10%)
Query: 114 HWGTSSHIPDPASSYPPMVPMPDHTYAQNPYPYPPARDTYLHPPSGASMWSRQGVDGPLS 173
H+ S P P P + P P LH P+ + +
Sbjct: 211 HYTNPSQDVTVPCPVPSTPPTPSPSTPPTPSPSCCHPRLSLHRPALEDLLLGSEA----N 266
Query: 174 ITGIVNGSVDPSERVAVVTGANKGLGFGIVKSLCEQFDG------YIYLTARDKKKGAE 226
+T + G D S T + G + A G
Sbjct: 267 LTCTLTGLRDASG--VTFTWTPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKT 323
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.134 0.397
Gapped
Lambda K H
0.267 0.0850 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,275,254
Number of extensions: 439784
Number of successful extensions: 1919
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1756
Number of HSP's successfully gapped: 458
Length of query: 484
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 387
Effective length of database: 3,993,456
Effective search space: 1545467472
Effective search space used: 1545467472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.3 bits)