BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8787
(364 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BLW|B Chain B, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|D Chain D, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|F Chain F, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|H Chain H, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|J Chain J, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|L Chain L, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|N Chain N, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|P Chain P, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLX|B Chain B, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|D Chain D, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|F Chain F, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|H Chain H, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|J Chain J, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|L Chain L, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|N Chain N, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|P Chain P, Yeast Isocitrate Dehydrogenase (Apo Form)
Length = 354
Score = 278 bits (711), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 137/247 (55%), Positives = 178/247 (72%), Gaps = 4/247 (1%)
Query: 122 FNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLITEEASS 181
F L+ANVRP +S+EG+ T Y++VD+V IRENTEGEYSGIEH + GVVQSIKLIT +AS
Sbjct: 107 FGLFANVRPAKSIEGFKTTYENVDLVLIRENTEGEYSGIEHIVCPGVVQSIKLITRDASE 166
Query: 182 RVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLDTVCL 241
RV +AFEYA+ R +V VHK+ I R++DGLF+ ++ ++++P++ E + +D L
Sbjct: 167 RVIRYAFEYARAIGRPRVIVVHKSTIQRLADGLFVNVAKELSKEYPDLTLETELIDNSVL 226
Query: 242 NMVQDPTQYD--VLVMPNLYGDILSDMCAGL-VGGLGLTPSGNIGLNGALFESVHGTAPD 298
+V +P+ Y V V PNLYGDILSD+ +GL G LGLTPS NIG ++FE+VHG+APD
Sbjct: 227 KVVTNPSAYTDAVSVCPNLYGDILSDLNSGLSAGSLGLTPSANIGHKISIFEAVHGSAPD 286
Query: 299 IAGKDLANPTALLLSAVMMLRHLDLNTHADVIQKAALDTIKEG-KYRTGDLGGKAKCSEF 357
IAG+D ANPTALLLS+VMML H+ L HAD IQ A L TI G + RTGDL G A S F
Sbjct: 287 IAGQDKANPTALLLSSVMMLNHMGLTNHADQIQNAVLSTIASGPENRTGDLAGTATTSSF 346
Query: 358 TNEICSK 364
T + +
Sbjct: 347 TEAVIKR 353
>pdb|3BLV|B Chain B, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|D Chain D, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|F Chain F, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|H Chain H, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
Length = 354
Score = 258 bits (660), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 135/247 (54%), Positives = 175/247 (70%), Gaps = 4/247 (1%)
Query: 122 FNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLITEEASS 181
F L+ANVRP +S+EG+ T Y++VD+V IRENTEGEYSGIEH + GVVQSIKLIT +AS
Sbjct: 107 FGLFANVRPAKSIEGFKTTYENVDLVLIRENTEGEYSGIEHIVCPGVVQSIKLITRDASE 166
Query: 182 RVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLDTVCL 241
RV +AFEYA+ R +V VHK+ I R++DGLF+ ++ ++++P++ E + +D L
Sbjct: 167 RVIRYAFEYARAIGRPRVIVVHKSTIQRLADGLFVNVAKELSKEYPDLTLETELIDNSVL 226
Query: 242 NMVQDPTQYD--VLVMPNLYGDILSDMCAGL-VGGLGLTPSGNIGLNGALFESVHGTAPD 298
+V +P+ Y V V PNLYGDILSD+ +GL G LGLTPS NIG ++FE+VHG+APD
Sbjct: 227 KVVTNPSAYTDAVSVCPNLYGDILSDLNSGLSAGSLGLTPSANIGHKISIFEAVHGSAPD 286
Query: 299 IAGKDLANPTALLLSAVMMLRHLDLNTHADVIQKAALDTIKEG-KYRTGDLGGKAKCSEF 357
IAG+D ANPTALLLS+V L H L HAD IQ A L TI G + RTGDL G A S F
Sbjct: 287 IAGQDKANPTALLLSSVXXLNHXGLTNHADQIQNAVLSTIASGPENRTGDLAGTATTSSF 346
Query: 358 TNEICSK 364
T + +
Sbjct: 347 TEAVIKR 353
>pdb|3BLW|A Chain A, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|C Chain C, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|E Chain E, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|G Chain G, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|I Chain I, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|K Chain K, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|M Chain M, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|O Chain O, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLX|A Chain A, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|C Chain C, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|E Chain E, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|G Chain G, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|I Chain I, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|K Chain K, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|M Chain M, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|O Chain O, Yeast Isocitrate Dehydrogenase (Apo Form)
Length = 349
Score = 234 bits (596), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 116/247 (46%), Positives = 166/247 (67%), Gaps = 4/247 (1%)
Query: 121 EFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLITEEAS 180
+ ++YANV +SL+G T D+D++ IRENTEGE+SG+EHE V GVV+S+K++T +
Sbjct: 100 QLDIYANVALFKSLKGVKTRIPDIDLIVIRENTEGEFSGLEHESVPGVVESLKVMTRPKT 159
Query: 181 SRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEK-FPEVKFEEKYLDTV 239
R+A FAF++AK NR VTAVHKANIM++ DGLF + +K +P++ +D
Sbjct: 160 ERIARFAFDFAKKYNRKSVTAVHKANIMKLGDGLFRNIITEIGQKEYPDIDVSSIIVDNA 219
Query: 240 CLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFE--SVHGTAP 297
+ V P Q+DVLV P++YG IL ++ A L+GG GL N G + A+FE S H
Sbjct: 220 SMQAVAKPHQFDVLVTPSMYGTILGNIGAALIGGPGLVAGANFGRDYAVFEPGSRH-VGL 278
Query: 298 DIAGKDLANPTALLLSAVMMLRHLDLNTHADVIQKAALDTIKEGKYRTGDLGGKAKCSEF 357
DI G+++ANPTA++LS+ +ML HL LN +A I KA +TI EGK+ T D+GG + ++F
Sbjct: 279 DIKGQNVANPTAMILSSTLMLNHLGLNEYATRISKAVHETIAEGKHTTRDIGGSSSTTDF 338
Query: 358 TNEICSK 364
TNEI +K
Sbjct: 339 TNEIINK 345
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 37 NTPSISQWSWRGLKVQGLGEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIE 96
+TP+ Q L V + ++YANV +SL+G T D+D++ IRENTEGE+SG+E
Sbjct: 82 HTPA-DQTGHGSLNVALRKQLDIYANVALFKSLKGVKTRIPDIDLIVIRENTEGEFSGLE 140
Query: 97 HEIVDGVCNS-NYATKWFSERGASVEFNL 124
HE V GV S T+ +ER A F+
Sbjct: 141 HESVPGVVESLKVMTRPKTERIARFAFDF 169
>pdb|3BLV|A Chain A, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|C Chain C, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|E Chain E, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|G Chain G, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
Length = 354
Score = 224 bits (570), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 114/247 (46%), Positives = 160/247 (64%), Gaps = 4/247 (1%)
Query: 121 EFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLITEEAS 180
+ ++YANV +SL+G T D+D++ IRENTEGE+SG+EHE V GVV+S+K+ T +
Sbjct: 100 QLDIYANVALFKSLKGVKTRIPDIDLIVIRENTEGEFSGLEHESVPGVVESLKVXTRPKT 159
Query: 181 SRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEK-FPEVKFEEKYLDTV 239
R+A FAF++AK NR VTAVHKANI ++ DGLF + +K +P++ +D
Sbjct: 160 ERIARFAFDFAKKYNRKSVTAVHKANIXKLGDGLFRNIITEIGQKEYPDIDVSSIIVDNA 219
Query: 240 CLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFE--SVHGTAP 297
V P Q+DVLV P+ YG IL ++ A L+GG GL N G + A+FE S H
Sbjct: 220 SXQAVAKPHQFDVLVTPSXYGTILGNIGAALIGGPGLVAGANFGRDYAVFEPGSRH-VGL 278
Query: 298 DIAGKDLANPTALLLSAVMMLRHLDLNTHADVIQKAALDTIKEGKYRTGDLGGKAKCSEF 357
DI G+++ANPTA +LS+ + L HL LN +A I KA +TI EGK+ T D+GG + ++F
Sbjct: 279 DIKGQNVANPTAXILSSTLXLNHLGLNEYATRISKAVHETIAEGKHTTRDIGGSSSTTDF 338
Query: 358 TNEICSK 364
TNEI +K
Sbjct: 339 TNEIINK 345
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 37 NTPSISQWSWRGLKVQGLGEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIE 96
+TP+ Q L V + ++YANV +SL+G T D+D++ IRENTEGE+SG+E
Sbjct: 82 HTPA-DQTGHGSLNVALRKQLDIYANVALFKSLKGVKTRIPDIDLIVIRENTEGEFSGLE 140
Query: 97 HEIVDGVCNS-NYATKWFSERGASVEFNL 124
HE V GV S T+ +ER A F+
Sbjct: 141 HESVPGVVESLKVXTRPKTERIARFAFDF 169
>pdb|2D1C|A Chain A, Crystal Structure Of Tt0538 Protein From Thermus
Thermophilus Hb8
pdb|2D1C|B Chain B, Crystal Structure Of Tt0538 Protein From Thermus
Thermophilus Hb8
Length = 496
Score = 221 bits (564), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 118/290 (40%), Positives = 174/290 (60%), Gaps = 16/290 (5%)
Query: 90 GEYSGIEHEIVDGVCNSNYATKW-------FSERGASVE----FNLYANVRPCRSLEGYP 138
G SG+ E ++ + + K + E+ A+V F YANVRP R P
Sbjct: 64 GIASGVPQETIESIRKTRVVLKGPLETPVGYGEKSANVTLRKLFETYANVRPVREFPNVP 123
Query: 139 TLY--DDVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLITEEASSRVAEFAFEYAKTNNR 196
T Y +D+V +REN E Y+GIEH V Q++KLI+ + S ++ FAFE A+ R
Sbjct: 124 TPYAGRGIDLVVVRENVEDLYAGIEHMQTPSVAQTLKLISWKGSEKIVRFAFELARAEGR 183
Query: 197 SKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLDTVCLNMVQDPTQYDVLVMP 256
KV K+NIM++++G R A+++P+++ +D +V+ P Q++V+V
Sbjct: 184 KKVHCATKSNIMKLAEGTLKRAFEQVAQEYPDIEAVHIIVDNAAHQLVKRPEQFEVIVTT 243
Query: 257 NLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGTAPDIAGKDLANPTALLLSAVM 316
N+ GDILSD+ +GL+GGLG PS NIG A+FE+VHG+AP AGK++ NPTA+LLSAVM
Sbjct: 244 NMNGDILSDLTSGLIGGLGFAPSANIGNEVAIFEAVHGSAPKYAGKNVINPTAVLLSAVM 303
Query: 317 MLRHLDLNTHADVIQKAALDTIKEGKYRTGDLGG---KAKCSEFTNEICS 363
MLR+L+ AD+I+ A L T++EG+ TGD+ G AK +E+T I
Sbjct: 304 MLRYLEEFATADLIENALLYTLEEGRVLTGDVVGYDRGAKTTEYTEAIIQ 353
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 57 FNLYANVRPCRSLEGYPTLY--DDVDVVTIRENTEGEYSGIEHEIVDGVCNSNYATKWF- 113
F YANVRP R PT Y +D+V +REN E Y+GIEH V + W
Sbjct: 107 FETYANVRPVREFPNVPTPYAGRGIDLVVVRENVEDLYAGIEHMQTPSVAQTLKLISWKG 166
Query: 114 SERGASVEFNL 124
SE+ F L
Sbjct: 167 SEKIVRFAFEL 177
>pdb|1WPW|A Chain A, Crystal Structure Of Ipmdh From Sulfolobus Tokodaii
pdb|1WPW|B Chain B, Crystal Structure Of Ipmdh From Sulfolobus Tokodaii
Length = 336
Score = 211 bits (538), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 113/250 (45%), Positives = 155/250 (62%), Gaps = 10/250 (4%)
Query: 122 FNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLITEEASS 181
+++YAN+RP +S+ G T Y +VD++ +RENTE Y G EH + DGV +K+IT AS
Sbjct: 88 YDMYANIRPAKSIPGIDTKYGNVDILIVRENTEDLYKGFEHIVSDGVAVGMKIITRFASE 147
Query: 182 RVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLDTVCL 241
R+A+ +A R KVT VHKAN+MR++DGLF CR + +V++ E Y+D
Sbjct: 148 RIAKVGLNFA-LRRRKKVTCVHKANVMRITDGLFAEACRSVLKG--KVEYSEMYVDAAAA 204
Query: 242 NMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGTAPDIAG 301
N+V++P +DV+V N+YGDILSD + + G LG+ PS NIG ALFE VHG A DIAG
Sbjct: 205 NLVRNPQMFDVIVTENVYGDILSDEASQIAGSLGIAPSANIGDKKALFEPVHGAAFDIAG 264
Query: 302 KDLANPTALLLSAVMMLRHLDLNTHADVIQKA--ALD-----TIKEGKYRTGDLGGKAKC 354
K++ NPTA LLS MM + ++ D KA AL+ KE K T D+GG A
Sbjct: 265 KNIGNPTAFLLSVSMMYERMYELSNDDRYIKASRALENAIYLVYKERKALTPDVGGNATT 324
Query: 355 SEFTNEICSK 364
+ NEI +K
Sbjct: 325 DDLINEIYNK 334
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 57 FNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVC-NSNYATKWFSE 115
+++YAN+RP +S+ G T Y +VD++ +RENTE Y G EH + DGV T++ SE
Sbjct: 88 YDMYANIRPAKSIPGIDTKYGNVDILIVRENTEDLYKGFEHIVSDGVAVGMKIITRFASE 147
Query: 116 RGASVEFNL 124
R A V N
Sbjct: 148 RIAKVGLNF 156
>pdb|3ASJ|A Chain A, Crystal Structure Of Homoisocitrate Dehydrogenase In
Complex With A Designed Inhibitor
pdb|3ASJ|B Chain B, Crystal Structure Of Homoisocitrate Dehydrogenase In
Complex With A Designed Inhibitor
pdb|3ASJ|C Chain C, Crystal Structure Of Homoisocitrate Dehydrogenase In
Complex With A Designed Inhibitor
pdb|3ASJ|D Chain D, Crystal Structure Of Homoisocitrate Dehydrogenase In
Complex With A Designed Inhibitor
Length = 334
Score = 200 bits (508), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 109/241 (45%), Positives = 148/241 (61%), Gaps = 3/241 (1%)
Query: 122 FNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLITEEASS 181
+LYANVRP +S P VD+V +RENTEG Y E +D V + +I+++AS
Sbjct: 91 LDLYANVRPAKS-RPVPGSRPGVDLVIVRENTEGLYVEQERRYLD-VAIADAVISKKASE 148
Query: 182 RVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLDTVCL 241
R+ A A+ R + HKAN++ ++ GLFL ++ A+ FP V ++ +D +
Sbjct: 149 RIGRAALRIAEGRPRKTLHIAHKANVLPLTQGLFLDTVKEVAKDFPLVNVQDIIVDNCAM 208
Query: 242 NMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGTAPDIAG 301
+V P ++DV+V NL GDILSD+ AGLVGGLGL PSGNIG A+FE VHG+APDIAG
Sbjct: 209 QLVMRPERFDVIVTTNLLGDILSDLAAGLVGGLGLAPSGNIGDTTAVFEPVHGSAPDIAG 268
Query: 302 KDLANPTALLLSAVMMLRHLDLNTHADVIQKAALDTIKEGKYRTGDLGGKAKCSEFTNEI 361
K +ANPTA +LSA MML +L A ++K A+D + E RT DLGG A FT +
Sbjct: 269 KGIANPTAAILSAAMMLDYLGEKEAAKRVEK-AVDLVLERGPRTPDLGGDATTEAFTEAV 327
Query: 362 C 362
Sbjct: 328 V 328
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 57 FNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVCNSNYATKWFSER 116
+LYANVRP +S P VD+V +RENTEG Y E +D +K SER
Sbjct: 91 LDLYANVRPAKS-RPVPGSRPGVDLVIVRENTEGLYVEQERRYLDVAIADAVISKKASER 149
Query: 117 GASVEFNLYANVRPCRSL 134
+ A RP ++L
Sbjct: 150 IGRAALRI-AEGRPRKTL 166
>pdb|1X0L|A Chain A, Crystal Structure Of Tetrameric Homoisocitrate
Dehydrogenase From An Extreme Thermophile, Thermus
Thermophilus
pdb|1X0L|B Chain B, Crystal Structure Of Tetrameric Homoisocitrate
Dehydrogenase From An Extreme Thermophile, Thermus
Thermophilus
Length = 333
Score = 200 bits (508), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 109/241 (45%), Positives = 148/241 (61%), Gaps = 3/241 (1%)
Query: 122 FNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLITEEASS 181
+LYANVRP +S P VD+V +RENTEG Y E +D V + +I+++AS
Sbjct: 90 LDLYANVRPAKS-RPVPGSRPGVDLVIVRENTEGLYVEQERRYLD-VAIADAVISKKASE 147
Query: 182 RVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLDTVCL 241
R+ A A+ R + HKAN++ ++ GLFL ++ A+ FP V ++ +D +
Sbjct: 148 RIGRAALRIAEGRPRKTLHIAHKANVLPLTQGLFLDTVKEVAKDFPLVNVQDIIVDNCAM 207
Query: 242 NMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGTAPDIAG 301
+V P ++DV+V NL GDILSD+ AGLVGGLGL PSGNIG A+FE VHG+APDIAG
Sbjct: 208 QLVMRPERFDVIVTTNLLGDILSDLAAGLVGGLGLAPSGNIGDTTAVFEPVHGSAPDIAG 267
Query: 302 KDLANPTALLLSAVMMLRHLDLNTHADVIQKAALDTIKEGKYRTGDLGGKAKCSEFTNEI 361
K +ANPTA +LSA MML +L A ++K A+D + E RT DLGG A FT +
Sbjct: 268 KGIANPTAAILSAAMMLDYLGEKEAAKRVEK-AVDLVLERGPRTPDLGGDATTEAFTEAV 326
Query: 362 C 362
Sbjct: 327 V 327
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 57 FNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVCNSNYATKWFSER 116
+LYANVRP +S P VD+V +RENTEG Y E +D +K SER
Sbjct: 90 LDLYANVRPAKS-RPVPGSRPGVDLVIVRENTEGLYVEQERRYLDVAIADAVISKKASER 148
Query: 117 GASVEFNLYANVRPCRSL 134
+ A RP ++L
Sbjct: 149 IGRAALRI-AEGRPRKTL 165
>pdb|3AH3|A Chain A, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
pdb|3AH3|B Chain B, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
pdb|3AH3|C Chain C, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
pdb|3AH3|D Chain D, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
Length = 334
Score = 196 bits (497), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 108/241 (44%), Positives = 146/241 (60%), Gaps = 3/241 (1%)
Query: 122 FNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLITEEASS 181
+LYANVRP +S P VD+V +RENTEG Y E +D V + +I+++AS
Sbjct: 91 LDLYANVRPAKS-RPVPGSRPGVDLVIVRENTEGLYVEQERRYLD-VAIADAVISKKASE 148
Query: 182 RVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLDTVCL 241
R+ A A+ R + HKAN++ ++ GLFL ++ A+ FP V ++ +D
Sbjct: 149 RIGRAALRIAEGRPRKTLHIAHKANVLPLTQGLFLDTVKEVAKDFPLVNVQDIIVDNCAT 208
Query: 242 NMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGTAPDIAG 301
+V P +YDV+V NL GDILSD+ AGL+GGLGL PSGNIG A+FE VHG+APDIAG
Sbjct: 209 QLVMRPERYDVIVTTNLLGDILSDLAAGLMGGLGLAPSGNIGDTTAVFEPVHGSAPDIAG 268
Query: 302 KDLANPTALLLSAVMMLRHLDLNTHADVIQKAALDTIKEGKYRTGDLGGKAKCSEFTNEI 361
K +ANPTA +LSA MML +L A ++K A+D + E T DLGG A FT +
Sbjct: 269 KGIANPTAAILSAAMMLDYLGEKEAAKRVEK-AVDLVLERGPMTPDLGGDATTEAFTEAV 327
Query: 362 C 362
Sbjct: 328 V 328
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 57 FNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVCNSNYATKWFSER 116
+LYANVRP +S P VD+V +RENTEG Y E +D +K SER
Sbjct: 91 LDLYANVRPAKS-RPVPGSRPGVDLVIVRENTEGLYVEQERRYLDVAIADAVISKKASER 149
Query: 117 GASVEFNLYANVRPCRSL 134
+ A RP ++L
Sbjct: 150 IGRAALRI-AEGRPRKTL 166
>pdb|3TY3|A Chain A, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe Bound To Glycyl-Glycyl-Glycine
pdb|3TY3|B Chain B, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe Bound To Glycyl-Glycyl-Glycine
pdb|3TY4|A Chain A, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe
pdb|3TY4|B Chain B, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe
Length = 366
Score = 186 bits (471), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 103/262 (39%), Positives = 152/262 (58%), Gaps = 21/262 (8%)
Query: 121 EFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDG----VVQSIKLIT 176
+ LYANVRP +SL+G VD+V +RENTE Y E + + V ++I+ I+
Sbjct: 103 KMGLYANVRPVKSLDGAKG--KPVDLVIVRENTECLYVKEERMVQNTPGKRVAEAIRRIS 160
Query: 177 EEASSRVAEFAFEYAKTNNRSK------------VTAVHKANIMRMSDGLFLRCCRDAAE 224
EEAS+++ + AFE AK+ + + VT +HK+N+M ++DGLF CR A
Sbjct: 161 EEASTKIGKMAFEIAKSRQKIRESGTYSIHKKPLVTIIHKSNVMSVTDGLFRESCRHAQS 220
Query: 225 ---KFPEVKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGN 281
+ + +E+ +D++ + ++P +DV+V PNLYGDILSD A L+G LGL PS N
Sbjct: 221 LDPSYASINVDEQIVDSMVYRLFREPECFDVVVAPNLYGDILSDGAASLIGSLGLVPSAN 280
Query: 282 IGLNGALFESVHGTAPDIAGKDLANPTALLLSAVMMLRHLDLNTHADVIQKAALDTIKEG 341
+G N + E VHG+APDIAG+ +ANP A S +ML + A I A + EG
Sbjct: 281 VGDNFVMSEPVHGSAPDIAGRGIANPVATFRSVALMLEFMGHQDAAADIYTAVDKVLTEG 340
Query: 342 KYRTGDLGGKAKCSEFTNEICS 363
K T DLGGK+ +E T+ + +
Sbjct: 341 KVLTPDLGGKSGTNEITDAVLA 362
>pdb|1GC8|A Chain A, The Crystal Structure Of Thermus Thermophilus
3-Isopropylmalate Dehydrogenase Mutated At 172th From
Ala To Phe
pdb|1GC8|B Chain B, The Crystal Structure Of Thermus Thermophilus
3-Isopropylmalate Dehydrogenase Mutated At 172th From
Ala To Phe
Length = 345
Score = 158 bits (399), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 91/252 (36%), Positives = 140/252 (55%), Gaps = 20/252 (7%)
Query: 123 NLYANVRPCRSLEGYPTLYD-------DVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLI 175
+L+AN+RP + G L VDV+ +RE T G Y G + + + +
Sbjct: 98 DLFANLRPAKVFPGLERLSPLKEEIARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERY 157
Query: 176 TEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKY 235
++ RVA AFE+A+ R V +V KAN++ + + + + + +P+V E +Y
Sbjct: 158 SKPEVERVARVAFEFAR-KRRKHVVSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQY 215
Query: 236 LDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGT 295
+D + +++V+ P ++DV+V N++GDILSD+ + L G LGL PS ++G +FE VHG+
Sbjct: 216 VDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPSASLGRGTPVFEPVHGS 275
Query: 296 APDIAGKDLANPTALLLSAVMMLRH----LDLNTHA-DVIQKAALDTIKEGKYRTGDLGG 350
APDIAGK +ANPTA +LSA MML H ++L D + KA L+T DLGG
Sbjct: 276 APDIAGKGIANPTAAILSAAMMLEHAFGLVELARKVEDAVAKALLETPPP------DLGG 329
Query: 351 KAKCSEFTNEIC 362
A FT +
Sbjct: 330 SAGTEAFTATVL 341
>pdb|1XAC|A Chain A, Chimera Isopropylmalate Dehydrogenase Between Bacillus
Subtilis (M) And Thermus Thermophilus (T) From
N-Terminal: 20% T Middle 20% M Residual 60% T, Mutated
At S82r. Low Temperature (100k) Structure.
pdb|1XAD|A Chain A, Chimera Isopropylmalate Dehydrogenase Between Bacillus
Subtilis (M) And Thermus Thermophilus (T) From
N-Terminal: 20% T Middle 20% M Residual 60% T, Mutated
At S82r. Low Temperature (150k) Structure
Length = 345
Score = 157 bits (396), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 91/254 (35%), Positives = 140/254 (55%), Gaps = 20/254 (7%)
Query: 121 EFNLYANVRPCRSLEGY-------PTLYDDVDVVTIRENTEGEYSGIEHEIVDGVVQSIK 173
+ +L+AN+RP + E D+VD V +RE T G Y G + + + +
Sbjct: 96 QLDLFANLRPVKVFESLSDASPLKKEYIDNVDFVIVRELTGGIYFGEPRGMSEAEAWNTE 155
Query: 174 LITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEE 233
++ RVA AFE A+ R V +V KAN++ + + + + + +P+V E
Sbjct: 156 RYSKPEVERVARVAFEAAR-KRRKHVVSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEH 213
Query: 234 KYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFESVH 293
+Y+D + +++V+ P ++DV+V N++GDILSD+ + L G LGL PS ++G +FE VH
Sbjct: 214 QYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPSASLGRGTPVFEPVH 273
Query: 294 GTAPDIAGKDLANPTALLLSAVMMLRH----LDLNTHA-DVIQKAALDTIKEGKYRTGDL 348
G+APDIAGK +ANPTA +LSA MML H ++L D + KA L+T DL
Sbjct: 274 GSAPDIAGKGIANPTAAILSAAMMLEHAFGLVELARKVEDAVAKALLETPPP------DL 327
Query: 349 GGKAKCSEFTNEIC 362
GG A FT +
Sbjct: 328 GGSAGTEAFTATVL 341
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 8/76 (10%)
Query: 56 EFNLYANVRPCRSLEGY-------PTLYDDVDVVTIRENTEGEYSGIEHEIVDG-VCNSN 107
+ +L+AN+RP + E D+VD V +RE T G Y G + + N+
Sbjct: 96 QLDLFANLRPVKVFESLSDASPLKKEYIDNVDFVIVRELTGGIYFGEPRGMSEAEAWNTE 155
Query: 108 YATKWFSERGASVEFN 123
+K ER A V F
Sbjct: 156 RYSKPEVERVARVAFE 171
>pdb|1DR0|A Chain A, Structure Of Modified 3-isopropylmalate Dehydrogenase At
The C- Terminus, Hd708
pdb|1DR0|B Chain B, Structure Of Modified 3-isopropylmalate Dehydrogenase At
The C- Terminus, Hd708
Length = 346
Score = 157 bits (396), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 91/253 (35%), Positives = 140/253 (55%), Gaps = 20/253 (7%)
Query: 123 NLYANVRPCRSLEGYPTLYD-------DVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLI 175
+L+AN+RP + G L VDV+ +RE T G Y G + + + +
Sbjct: 98 DLFANLRPAKVFPGLERLSPLKEEIARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERY 157
Query: 176 TEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKY 235
++ RVA AFE A+ R V +V KAN++ + + + + + +P+V E +Y
Sbjct: 158 SKPEVERVARVAFELAR-KRRKHVVSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQY 215
Query: 236 LDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGT 295
+D + +++V+ P ++DV+V N++GDILSD+ + L G LGL PS ++G +FE VHG+
Sbjct: 216 VDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPSASLGRGTPVFEPVHGS 275
Query: 296 APDIAGKDLANPTALLLSAVMMLRH----LDLNTHA-DVIQKAALDTIKEGKYRTGDLGG 350
APDIAGK +ANPTA +LSA MML H ++L D + KA L+T DLGG
Sbjct: 276 APDIAGKGIANPTAAILSAAMMLEHAFGLVELARKVEDAVAKALLETPPP------DLGG 329
Query: 351 KAKCSEFTNEICS 363
A FT + +
Sbjct: 330 SAGTEAFTATVTA 342
>pdb|1DPZ|A Chain A, Stucture Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd711
pdb|1DPZ|B Chain B, Stucture Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd711
Length = 349
Score = 156 bits (395), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 91/251 (36%), Positives = 139/251 (55%), Gaps = 20/251 (7%)
Query: 123 NLYANVRPCRSLEGYPTLYD-------DVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLI 175
+L+AN+RP + G L VDV+ +RE T G Y G + + + +
Sbjct: 98 DLFANLRPAKVFPGLERLSPLKEEIARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERY 157
Query: 176 TEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKY 235
++ RVA AFE A+ R V +V KAN++ + + + + + +P+V E +Y
Sbjct: 158 SKPEVERVARVAFELAR-KRRKHVVSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQY 215
Query: 236 LDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGT 295
+D + +++V+ P ++DV+V N++GDILSD+ + L G LGL PS ++G +FE VHG+
Sbjct: 216 VDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPSASLGRGTPVFEPVHGS 275
Query: 296 APDIAGKDLANPTALLLSAVMMLRH----LDLNTHA-DVIQKAALDTIKEGKYRTGDLGG 350
APDIAGK +ANPTA +LSA MML H ++L D + KA L+T DLGG
Sbjct: 276 APDIAGKGIANPTAAILSAAMMLEHAFGLVELARKVEDAVAKALLETPPP------DLGG 329
Query: 351 KAKCSEFTNEI 361
A FT +
Sbjct: 330 SAGTEAFTATV 340
>pdb|1G2U|A Chain A, The Structure Of The Mutant, A172v, Of 3-Isopropylmalate
Dehydrogenase From Thermus Thermophilus Hb8 : Its
Thermostability And Structure
Length = 345
Score = 156 bits (395), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 91/252 (36%), Positives = 139/252 (55%), Gaps = 20/252 (7%)
Query: 123 NLYANVRPCRSLEGYPTLYD-------DVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLI 175
+L+AN+RP + G L VDV+ +RE T G Y G + + + +
Sbjct: 98 DLFANLRPAKVFPGLERLSPLKEEIARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERY 157
Query: 176 TEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKY 235
++ RVA AFE A+ R V +V KAN++ + + + + + +P+V E +Y
Sbjct: 158 SKPEVERVARVAFEVAR-KRRKHVVSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQY 215
Query: 236 LDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGT 295
+D + +++V+ P ++DV+V N++GDILSD+ + L G LGL PS ++G +FE VHG+
Sbjct: 216 VDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPSASLGRGTPVFEPVHGS 275
Query: 296 APDIAGKDLANPTALLLSAVMMLRH----LDLNTHA-DVIQKAALDTIKEGKYRTGDLGG 350
APDIAGK +ANPTA +LSA MML H ++L D + KA L+T DLGG
Sbjct: 276 APDIAGKGIANPTAAILSAAMMLEHAFGLVELARKVEDAVAKALLETPPP------DLGG 329
Query: 351 KAKCSEFTNEIC 362
A FT +
Sbjct: 330 SAGTEAFTATVL 341
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
Query: 58 NLYANVRPCRSLEGYPTLYD-------DVDVVTIRENTEGEYSGIEHEIVDG-VCNSNYA 109
+L+AN+RP + G L VDV+ +RE T G Y G + + N+
Sbjct: 98 DLFANLRPAKVFPGLERLSPLKEEIARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERY 157
Query: 110 TKWFSERGASVEFNLYANVR 129
+K ER A V F + R
Sbjct: 158 SKPEVERVARVAFEVARKRR 177
>pdb|1OSJ|A Chain A, Structure Of 3-isopropylmalate Dehydrogenase
pdb|1OSJ|B Chain B, Structure Of 3-isopropylmalate Dehydrogenase
Length = 345
Score = 156 bits (394), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 91/252 (36%), Positives = 139/252 (55%), Gaps = 20/252 (7%)
Query: 123 NLYANVRPCRSLEGYPTLYD-------DVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLI 175
+L+AN+RP + G L VDV+ +RE T G Y G + + + +
Sbjct: 98 DLFANLRPAKVFPGLERLSPLKEEIARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERY 157
Query: 176 TEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKY 235
++ RVA AFE A+ R V +V KAN++ + + + + + +P+V E +Y
Sbjct: 158 SKPEVERVARVAFELAR-KRRKHVVSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQY 215
Query: 236 LDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGT 295
+D + +++V+ P ++DV+V N++GDILSD+ + L G LGL PS ++G +FE VHG+
Sbjct: 216 VDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPSASLGRGTPVFEPVHGS 275
Query: 296 APDIAGKDLANPTALLLSAVMMLRH----LDLNTHA-DVIQKAALDTIKEGKYRTGDLGG 350
APDIAGK +ANPTA +LSA MML H ++L D + KA L+T DLGG
Sbjct: 276 APDIAGKGIANPTAAILSAAMMLEHAFGLVELARKVEDAVAKALLETPPP------DLGG 329
Query: 351 KAKCSEFTNEIC 362
A FT +
Sbjct: 330 SAGTEAFTATVL 341
>pdb|1IDM|A Chain A, 3-Isopropylmalate Dehydrogenase, Loop-Deleted Chimera
Length = 343
Score = 156 bits (394), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 91/252 (36%), Positives = 139/252 (55%), Gaps = 20/252 (7%)
Query: 123 NLYANVRPCRSLEGYPTLYD-------DVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLI 175
+L+AN+RP + G L VDV+ +RE T G Y G + + + +
Sbjct: 96 DLFANLRPAKVFPGLERLSPLKEEIARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERY 155
Query: 176 TEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKY 235
++ RVA AFE A+ R V +V KAN++ + + + + + +P+V E +Y
Sbjct: 156 SKPEVERVARVAFEAAR-KRRKHVVSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQY 213
Query: 236 LDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGT 295
+D + +++V+ P ++DV+V N++GDILSD+ + L G LGL PS ++G +FE VHG+
Sbjct: 214 VDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPSASLGRGTPVFEPVHGS 273
Query: 296 APDIAGKDLANPTALLLSAVMMLRH----LDLNTHA-DVIQKAALDTIKEGKYRTGDLGG 350
APDIAGK +ANPTA +LSA MML H ++L D + KA L+T DLGG
Sbjct: 274 APDIAGKGIANPTAAILSAAMMLEHAFGLVELARKVEDAVAKALLETPPP------DLGG 327
Query: 351 KAKCSEFTNEIC 362
A FT +
Sbjct: 328 SAGTEAFTATVL 339
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 8/74 (10%)
Query: 58 NLYANVRPCRSLEGYPTLYD-------DVDVVTIRENTEGEYSGIEHEIVDG-VCNSNYA 109
+L+AN+RP + G L VDV+ +RE T G Y G + + N+
Sbjct: 96 DLFANLRPAKVFPGLERLSPLKEEIARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERY 155
Query: 110 TKWFSERGASVEFN 123
+K ER A V F
Sbjct: 156 SKPEVERVARVAFE 169
>pdb|1OSI|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|B Chain B, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|C Chain C, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|D Chain D, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1HEX|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase In Complex
With Nad+: Ligand-Induced Loop-Closing And Mechanism For
Cofactor Specificity
pdb|1XAA|A Chain A, 3-Isopropylmalate Dehydrogenase, Low Temperature (100k)
Structure
pdb|1XAB|A Chain A, 3-Isopropylmalate Dehydrogenase, Low Temperature (150k)
Structure
pdb|2ZTW|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase In Complex
With The Inhibitor And Nad+
Length = 345
Score = 156 bits (394), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 91/252 (36%), Positives = 139/252 (55%), Gaps = 20/252 (7%)
Query: 123 NLYANVRPCRSLEGYPTLYD-------DVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLI 175
+L+AN+RP + G L VDV+ +RE T G Y G + + + +
Sbjct: 98 DLFANLRPAKVFPGLERLSPLKEEIARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERY 157
Query: 176 TEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKY 235
++ RVA AFE A+ R V +V KAN++ + + + + + +P+V E +Y
Sbjct: 158 SKPEVERVARVAFEAAR-KRRKHVVSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQY 215
Query: 236 LDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGT 295
+D + +++V+ P ++DV+V N++GDILSD+ + L G LGL PS ++G +FE VHG+
Sbjct: 216 VDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPSASLGRGTPVFEPVHGS 275
Query: 296 APDIAGKDLANPTALLLSAVMMLRH----LDLNTHA-DVIQKAALDTIKEGKYRTGDLGG 350
APDIAGK +ANPTA +LSA MML H ++L D + KA L+T DLGG
Sbjct: 276 APDIAGKGIANPTAAILSAAMMLEHAFGLVELARKVEDAVAKALLETPPP------DLGG 329
Query: 351 KAKCSEFTNEIC 362
A FT +
Sbjct: 330 SAGTEAFTATVL 341
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 8/74 (10%)
Query: 58 NLYANVRPCRSLEGYPTLYD-------DVDVVTIRENTEGEYSGIEHEIVDG-VCNSNYA 109
+L+AN+RP + G L VDV+ +RE T G Y G + + N+
Sbjct: 98 DLFANLRPAKVFPGLERLSPLKEEIARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERY 157
Query: 110 TKWFSERGASVEFN 123
+K ER A V F
Sbjct: 158 SKPEVERVARVAFE 171
>pdb|2Y3Z|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Apo Enzyme
pdb|2Y40|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Mn
pdb|2Y40|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Mn
pdb|2Y41|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Ipm And Mn
pdb|2Y41|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Ipm And Mn
pdb|2Y42|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|2Y42|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|2Y42|C Chain C, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|2Y42|D Chain D, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|4F7I|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
pdb|4F7I|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
pdb|4F7I|C Chain C, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
pdb|4F7I|D Chain D, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
Length = 359
Score = 156 bits (394), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 91/252 (36%), Positives = 139/252 (55%), Gaps = 20/252 (7%)
Query: 123 NLYANVRPCRSLEGYPTLYD-------DVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLI 175
+L+AN+RP + G L VDV+ +RE T G Y G + + + +
Sbjct: 101 DLFANLRPAKVFPGLERLSPLKEEIARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERY 160
Query: 176 TEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKY 235
++ RVA AFE A+ R V +V KAN++ + + + + + +P+V E +Y
Sbjct: 161 SKPEVERVARVAFEAAR-KRRKHVVSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQY 218
Query: 236 LDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGT 295
+D + +++V+ P ++DV+V N++GDILSD+ + L G LGL PS ++G +FE VHG+
Sbjct: 219 VDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPSASLGRGTPVFEPVHGS 278
Query: 296 APDIAGKDLANPTALLLSAVMMLRH----LDLNTHA-DVIQKAALDTIKEGKYRTGDLGG 350
APDIAGK +ANPTA +LSA MML H ++L D + KA L+T DLGG
Sbjct: 279 APDIAGKGIANPTAAILSAAMMLEHAFGLVELARKVEDAVAKALLETPPP------DLGG 332
Query: 351 KAKCSEFTNEIC 362
A FT +
Sbjct: 333 SAGTEAFTATVL 344
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 8/74 (10%)
Query: 58 NLYANVRPCRSLEGYPTLYD-------DVDVVTIRENTEGEYSGIEHEIVDG-VCNSNYA 109
+L+AN+RP + G L VDV+ +RE T G Y G + + N+
Sbjct: 101 DLFANLRPAKVFPGLERLSPLKEEIARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERY 160
Query: 110 TKWFSERGASVEFN 123
+K ER A V F
Sbjct: 161 SKPEVERVARVAFE 174
>pdb|1IPD|A Chain A, Three-Dimensional Structure Of A Highly Thermostable
Enzyme, 3- Isopropylmalate Dehydrogenase Of Thermus
Thermophilus At 2.2 Angstroms Resolution
Length = 345
Score = 156 bits (394), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 91/252 (36%), Positives = 139/252 (55%), Gaps = 20/252 (7%)
Query: 123 NLYANVRPCRSLEGYPTLYD-------DVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLI 175
+L+AN+RP + G L VDV+ +RE T G Y G + + + +
Sbjct: 98 DLFANLRPAKVFPGLERLSPLKEEIARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERY 157
Query: 176 TEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKY 235
++ RVA AFE A+ R V +V KAN++ + + + + + +P+V E +Y
Sbjct: 158 SKPEVERVARVAFEAAR-KRRKHVVSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQY 215
Query: 236 LDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGT 295
+D + +++V+ P ++DV+V N++GDILSD+ + L G LGL PS ++G +FE VHG+
Sbjct: 216 VDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPSASLGRGTPVFEPVHGS 275
Query: 296 APDIAGKDLANPTALLLSAVMMLRH----LDLNTHA-DVIQKAALDTIKEGKYRTGDLGG 350
APDIAGK +ANPTA +LSA MML H ++L D + KA L+T DLGG
Sbjct: 276 APDIAGKGIANPTAAILSAAMMLEHAFGLVELARKVEDAVAKALLETPPP------DLGG 329
Query: 351 KAKCSEFTNEIC 362
A FT +
Sbjct: 330 SAGTEAFTATVL 341
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 8/74 (10%)
Query: 58 NLYANVRPCRSLEGYPTLYD-------DVDVVTIRENTEGEYSGIEHEIVDG-VCNSNYA 109
+L+AN+RP + G L VDV+ +RE T G Y G + + N+
Sbjct: 98 DLFANLRPAKVFPGLERLSPLKEEIARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERY 157
Query: 110 TKWFSERGASVEFN 123
+K ER A V F
Sbjct: 158 SKPEVERVARVAFE 171
>pdb|1DR8|A Chain A, Structure Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd177
pdb|1DR8|B Chain B, Structure Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd177
Length = 344
Score = 156 bits (394), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 91/251 (36%), Positives = 139/251 (55%), Gaps = 20/251 (7%)
Query: 123 NLYANVRPCRSLEGYPTLYD-------DVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLI 175
+L+AN+RP + G L VDV+ +RE T G Y G + + + +
Sbjct: 98 DLFANLRPAKVFPGLERLSPLKEEIARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERY 157
Query: 176 TEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKY 235
++ RVA AFE A+ R V +V KAN++ + + + + + +P+V E +Y
Sbjct: 158 SKPEVERVARVAFELAR-KRRKHVVSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQY 215
Query: 236 LDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGT 295
+D + +++V+ P ++DV+V N++GDILSD+ + L G LGL PS ++G +FE VHG+
Sbjct: 216 VDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPSASLGRGTPVFEPVHGS 275
Query: 296 APDIAGKDLANPTALLLSAVMMLRH----LDLNTHA-DVIQKAALDTIKEGKYRTGDLGG 350
APDIAGK +ANPTA +LSA MML H ++L D + KA L+T DLGG
Sbjct: 276 APDIAGKGIANPTAAILSAAMMLEHAFGLVELARKVEDAVAKALLETPPP------DLGG 329
Query: 351 KAKCSEFTNEI 361
A FT +
Sbjct: 330 SAGTEAFTATV 340
>pdb|1WAL|A Chain A, 3-Isopropylmalate Dehydrogenase (Ipmdh) Mutant (M219a)from
Thermus Thermophilus
Length = 345
Score = 156 bits (394), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 91/252 (36%), Positives = 138/252 (54%), Gaps = 20/252 (7%)
Query: 123 NLYANVRPCRSLEGYPTLYD-------DVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLI 175
+L+AN+RP + G L VDV+ +RE T G Y G + + + +
Sbjct: 98 DLFANLRPAKVFPGLERLSPLKEEIARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERY 157
Query: 176 TEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKY 235
++ RVA AFE A+ R V +V KAN++ + + + + + +P+V E +Y
Sbjct: 158 SKPEVERVARVAFEAAR-KRRKHVVSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQY 215
Query: 236 LDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGT 295
+D +++V+ P ++DV+V N++GDILSD+ + L G LGL PS ++G +FE VHG+
Sbjct: 216 VDAAAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPSASLGRGTPVFEPVHGS 275
Query: 296 APDIAGKDLANPTALLLSAVMMLRH----LDLNTHA-DVIQKAALDTIKEGKYRTGDLGG 350
APDIAGK +ANPTA +LSA MML H ++L D + KA L+T DLGG
Sbjct: 276 APDIAGKGIANPTAAILSAAMMLEHAFGLVELARKVEDAVAKALLETPPP------DLGG 329
Query: 351 KAKCSEFTNEIC 362
A FT +
Sbjct: 330 SAGTEAFTATVL 341
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 8/74 (10%)
Query: 58 NLYANVRPCRSLEGYPTLYD-------DVDVVTIRENTEGEYSGIEHEIVDG-VCNSNYA 109
+L+AN+RP + G L VDV+ +RE T G Y G + + N+
Sbjct: 98 DLFANLRPAKVFPGLERLSPLKEEIARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERY 157
Query: 110 TKWFSERGASVEFN 123
+K ER A V F
Sbjct: 158 SKPEVERVARVAFE 171
>pdb|1GC9|A Chain A, The Crystal Structure Of Thermus Thermophilus
3-Isopropylmalate Dehydrogenase Mutated At 172th From
Ala To Gly
Length = 345
Score = 155 bits (392), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 91/252 (36%), Positives = 139/252 (55%), Gaps = 20/252 (7%)
Query: 123 NLYANVRPCRSLEGYPTLYD-------DVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLI 175
+L+AN+RP + G L VDV+ +RE T G Y G + + + +
Sbjct: 98 DLFANLRPAKVFPGLERLSPLKEEIARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERY 157
Query: 176 TEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKY 235
++ RVA AFE A+ R V +V KAN++ + + + + + +P+V E +Y
Sbjct: 158 SKPEVERVARVAFEGAR-KRRKHVVSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQY 215
Query: 236 LDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGT 295
+D + +++V+ P ++DV+V N++GDILSD+ + L G LGL PS ++G +FE VHG+
Sbjct: 216 VDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPSASLGRGTPVFEPVHGS 275
Query: 296 APDIAGKDLANPTALLLSAVMMLRH----LDLNTHA-DVIQKAALDTIKEGKYRTGDLGG 350
APDIAGK +ANPTA +LSA MML H ++L D + KA L+T DLGG
Sbjct: 276 APDIAGKGIANPTAAILSAAMMLEHAFGLVELARKVEDAVAKALLETPPP------DLGG 329
Query: 351 KAKCSEFTNEIC 362
A FT +
Sbjct: 330 SAGTEAFTATVL 341
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 8/74 (10%)
Query: 58 NLYANVRPCRSLEGYPTLYD-------DVDVVTIRENTEGEYSGIEHEIVDG-VCNSNYA 109
+L+AN+RP + G L VDV+ +RE T G Y G + + N+
Sbjct: 98 DLFANLRPAKVFPGLERLSPLKEEIARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERY 157
Query: 110 TKWFSERGASVEFN 123
+K ER A V F
Sbjct: 158 SKPEVERVARVAFE 171
>pdb|3U1H|A Chain A, Crystal Structure Of Ipmdh From The Last Common Ancestor
Of Bacillus
pdb|3U1H|B Chain B, Crystal Structure Of Ipmdh From The Last Common Ancestor
Of Bacillus
Length = 390
Score = 155 bits (392), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 100/260 (38%), Positives = 149/260 (57%), Gaps = 27/260 (10%)
Query: 122 FNLYANVRPCRSLEGYPTLYD----------DVDVVTIRENTEGEYSGIEHEIVD----G 167
+L+AN+RP + Y +L D VD+V +RE T G Y G E +
Sbjct: 120 LDLFANLRPVKV---YDSLADASPLKKEVIEGVDLVIVRELTGGLYFGEPSERYEEGEEA 176
Query: 168 VVQSIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFP 227
V ++ L T E R+ AFE A T + KVT+V KAN++ S L+ + A+++P
Sbjct: 177 AVDTL-LYTREEIERIIRKAFELALTRKK-KVTSVDKANVLE-SSRLWREVAEEVAKEYP 233
Query: 228 EVKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNG- 286
+V+ E +D + ++++P Q+DV+V N++GDILSD + + G LG+ PS ++ +G
Sbjct: 234 DVELEHMLVDNAAMQLIRNPRQFDVIVTENMFGDILSDEASMITGSLGMLPSASLSTDGL 293
Query: 287 ALFESVHGTAPDIAGKDLANPTALLLSAVMMLRH-LDLNTHADVIQKAALDTIKEGKYRT 345
L+E VHG+APDIAGK +ANP A +LSA MMLR+ L A I+KA + EG YRT
Sbjct: 294 GLYEPVHGSAPDIAGKGIANPLATILSAAMMLRYSFGLEEEAKAIEKAVEKVLAEG-YRT 352
Query: 346 GDL---GGK-AKCSEFTNEI 361
D+ GGK +E T+E+
Sbjct: 353 ADIAKPGGKYVSTTEMTDEV 372
>pdb|1CNZ|A Chain A, 3-Isopropylmalate Dehydrogenase (Ipmdh) From Salmonella
Typhimurium
pdb|1CNZ|B Chain B, 3-Isopropylmalate Dehydrogenase (Ipmdh) From Salmonella
Typhimurium
Length = 363
Score = 152 bits (384), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 100/271 (36%), Positives = 156/271 (57%), Gaps = 25/271 (9%)
Query: 115 ERGASV----EFNLYANVRPCR---SLEGYPTLYDDV-----DVVTIRENTEGEYSGIEH 162
ERGA + F L++N+RP + LE + L D+ D++ +RE T G Y G +
Sbjct: 91 ERGALLPLRKHFKLFSNLRPAKLYQGLEAFCPLRADIAANGFDILCVRELTGGIYFG-QP 149
Query: 163 EIVDGVVQSIKLITEEAS-----SRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLR 217
+ +G Q K E R+A AFE A+ R KVT++ KAN+++ S L+
Sbjct: 150 KGREGSGQYEKAFDTEVYHRFEIERIARIAFESARKRRR-KVTSIDKANVLQ-SSILWRE 207
Query: 218 CCRDAAEKFPEVKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLT 277
D A+ +P+V+ Y+D + +++DP+Q+DVL+ NL+GDILSD CA + G +G+
Sbjct: 208 IVNDVAKTYPDVELAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGML 267
Query: 278 PSGNIGLNG-ALFESVHGTAPDIAGKDLANPTALLLSAVMMLRH-LDLNTHADVIQKAAL 335
PS ++ G L+E G+APDIAGK++ANP A +LS ++LR+ LD N A I++A
Sbjct: 268 PSASLNEQGFGLYEPAGGSAPDIAGKNIANPIAQILSLALLLRYSLDANDAATAIEQAIN 327
Query: 336 DTIKEGKYRTGDL--GGKAKCSEFTNEICSK 364
++EG RTGDL G A ++ +I ++
Sbjct: 328 RALEEG-VRTGDLARGAAAVSTDEMGDIIAR 357
>pdb|1W0D|A Chain A, The High Resolution Structure Of Mycobacterium
Tuberculosis Leub (Rv2995c)
pdb|1W0D|B Chain B, The High Resolution Structure Of Mycobacterium
Tuberculosis Leub (Rv2995c)
pdb|1W0D|C Chain C, The High Resolution Structure Of Mycobacterium
Tuberculosis Leub (Rv2995c)
pdb|1W0D|D Chain D, The High Resolution Structure Of Mycobacterium
Tuberculosis Leub (Rv2995c)
pdb|2G4O|A Chain A, Anomalous Substructure Of 3-isopropylmalate Dehydrogenase
pdb|2G4O|B Chain B, Anomalous Substructure Of 3-isopropylmalate Dehydrogenase
pdb|2G4O|C Chain C, Anomalous Substructure Of 3-isopropylmalate Dehydrogenase
pdb|2G4O|D Chain D, Anomalous Substructure Of 3-isopropylmalate Dehydrogenase
Length = 337
Score = 150 bits (380), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 87/238 (36%), Positives = 133/238 (55%), Gaps = 14/238 (5%)
Query: 125 YANVRPCRSLEGYPTLYDD---VDVVTIRENTEGEYSGIEHEIVDG----VVQSIKLITE 177
+ N+RP R G + +D V +RE TEG Y+G I G V + + T
Sbjct: 94 HINLRPARLYPGVASPLSGNPGIDFVVVREGTEGPYTGNGGAIRVGTPNEVATEVSVNTA 153
Query: 178 EASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLD 237
RV AFE A+ R +T VHK N++ + GL+LR + E +P+V+ +++D
Sbjct: 154 FGVRRVVADAFERAR-RRRKHLTLVHKTNVLTFAGGLWLRTVDEVGECYPDVEVAYQHVD 212
Query: 238 TVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIG---LNGALFESVHG 294
++M+ DP ++DV+V NL+GDI++D+ A + GG+GL SGNI N ++FE VHG
Sbjct: 213 AATIHMITDPGRFDVIVTDNLFGDIITDLAAAVCGGIGLAASGNIDATRANPSMFEPVHG 272
Query: 295 TAPDIAGKDLANPTALLLSAVMMLRHL---DLNTHADVIQKAALDTIKEGKYRTGDLG 349
+APDIAG+ +A+PTA ++S ++L HL D D +A L T + T D+G
Sbjct: 273 SAPDIAGQGIADPTAAIMSVALLLSHLGEHDAAARVDRAVEAHLATRGSERLATSDVG 330
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 60 YANVRPCRSLEGYPTLYDD---VDVVTIRENTEGEYSG 94
+ N+RP R G + +D V +RE TEG Y+G
Sbjct: 94 HINLRPARLYPGVASPLSGNPGIDFVVVREGTEGPYTG 131
>pdb|1ISO|A Chain A, Isocitrate Dehydrogenase: Structure Of An Engineered
Nadp+--> Nad+ Specificity-Reversal Mutant
Length = 416
Score = 150 bits (380), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 143/294 (48%), Gaps = 53/294 (18%)
Query: 121 EFNLYANVRPCRSLEGYPTLYDD---VDVVTIRENTEGEYSGIEHEI----VDGVVQ--- 170
E +LY +RP R +G P+ D+V REN+E Y+GIE + + V++
Sbjct: 121 ELDLYICLRPVRYYQGTPSPVKHPELTDMVIFRENSEDIYAGIEWKADSADAEKVIKFLR 180
Query: 171 ----------------SIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGL 214
IK ++EE + R+ A EYA N+R VT VHK NIM+ ++G
Sbjct: 181 EEMGVKKIRFPEHCGIGIKPMSEEGTKRLVRAAIEYAIANDRDSVTLVHKGNIMKFTEGA 240
Query: 215 FLRCCRD-AAEKF-------------------PEVKFEEKYLDTVCLNMVQDPTQYDVLV 254
F A E+F E+ ++ D ++ P +YDV+
Sbjct: 241 FKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFLQQILLRPAEYDVIA 300
Query: 255 MPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGTAPDIAGKDLANPTALLLSA 314
NL GD +SD A VGG+G+ P NIG ALFE+ HGTAPDIAG+D ANP +++LSA
Sbjct: 301 CMNLNGDYISDALAAQVGGIGIAPGANIGDEYALFEATHGTAPDIAGQDKANPGSIILSA 360
Query: 315 VMMLRHLDLNTHADVIQKAALDTIKEGKYRTGDL-----GGK-AKCSEFTNEIC 362
MMLRH+ AD+I K I K T D G K KCSEF + I
Sbjct: 361 EMMLRHMGWTEAADLIVKGMEGAIN-AKTVTKDFESLMDGAKLLKCSEFGDAII 413
>pdb|3FMX|X Chain X, Crystal Structure Of Tartrate Dehydrogenase From
Pseudomonas Putida Complexed With Nadh
Length = 364
Score = 149 bits (375), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 91/266 (34%), Positives = 141/266 (53%), Gaps = 28/266 (10%)
Query: 107 NYATKWFSERGASVEFNLYANVRPCRSLEGYPTLY-----DDVDVVTIRENTEGEYSGI- 160
++ + W S EF+ Y N+RP R G P D+D V +RENTEGEYS +
Sbjct: 86 DHISLWGSLLKFRREFDQYVNIRPVRLFPGVPCALANRKVGDIDFVVVRENTEGEYSSLG 145
Query: 161 -------EHEIVDGVVQSIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDG 213
E+EIV + +SI T R+ ++AF+ A+ R VT+ K+N M +S
Sbjct: 146 GIMFENTENEIV--IQESI--FTRRGVDRILKYAFDLAEKRERKHVTSATKSNGMAISMP 201
Query: 214 LFLRCCRDAAEKFPEVKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGG 273
+ + A +P V ++++++D +C V P ++DV+V NL+GDILSD+ G
Sbjct: 202 YWDKRTEAMAAHYPHVSWDKQHIDILCARFVLQPERFDVVVASNLFGDILSDLGPACAGT 261
Query: 274 LGLTPSGNIGLN---GALFESVHGTAPDIAGKDLANPTALLLSAVMMLRHLD------LN 324
+G+ PS N+ +LFE VHG+APDI GK++ANP A++ S +ML L
Sbjct: 262 IGIAPSANLNPERNFPSLFEPVHGSAPDIFGKNIANPIAMIWSGALMLEFLGQGDERYQR 321
Query: 325 THADVIQKAALDTIKEGKYRTGDLGG 350
H D++ A++ + T D+GG
Sbjct: 322 AHDDMLN--AIERVIADGSVTPDMGG 345
>pdb|1VLC|A Chain A, Crystal Structure Of 3-isopropylmalate Dehydrogenase
(tm0556) From Thermotoga Maritima At 1.90 A Resolution
Length = 366
Score = 148 bits (374), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 97/256 (37%), Positives = 141/256 (55%), Gaps = 17/256 (6%)
Query: 122 FNLYANVRPC---RSLEGYPTLYDDV-----DVVTIRENTEGEYSGIEHEIVDGVVQSIK 173
NLYAN+RP RSL L + V D+VT+RE + G Y G + +
Sbjct: 110 LNLYANIRPIKVYRSLVHVSPLKEKVIGSGVDLVTVRELSYGVYYGQPRGLDEEKGFDTM 169
Query: 174 LITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEE 233
+ + R+A AFE AK N R KVT+V KAN++ S L+ + + A ++P+V+
Sbjct: 170 IYDRKTVERIARTAFEIAK-NRRKKVTSVDKANVL-YSSMLWRKVVNEVAREYPDVELTH 227
Query: 234 KYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFESVH 293
Y+D + ++ P+Q+DV++ N++GDILSD A L G LGL PS + G + L+E
Sbjct: 228 IYVDNAAMQLILKPSQFDVILTTNMFGDILSDESAALPGSLGLLPSASFG-DKNLYEPAG 286
Query: 294 GTAPDIAGKDLANPTALLLSAVMMLRH-LDLNTHADVIQKAALDTIKEGKYRTGDLG--- 349
G+APDIAGK++ANP A +LS MML H + A I++A I+EG YRT D+
Sbjct: 287 GSAPDIAGKNIANPIAQILSLAMMLEHSFGMVEEARKIERAVELVIEEG-YRTRDIAEDP 345
Query: 350 -GKAKCSEFTNEICSK 364
S+ + IC K
Sbjct: 346 EKAVSTSQMGDLICKK 361
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 8/46 (17%)
Query: 57 FNLYANVRPC---RSLEGYPTLYDDV-----DVVTIRENTEGEYSG 94
NLYAN+RP RSL L + V D+VT+RE + G Y G
Sbjct: 110 LNLYANIRPIKVYRSLVHVSPLKEKVIGSGVDLVTVRELSYGVYYG 155
>pdb|2DHT|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain7
pdb|2DHT|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain7
pdb|2E0C|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain7 At 2.0 A Resolution
pdb|2E0C|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain7 At 2.0 A Resolution
pdb|2E5M|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain 7
pdb|2E5M|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain 7
Length = 409
Score = 148 bits (374), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 87/262 (33%), Positives = 140/262 (53%), Gaps = 41/262 (15%)
Query: 122 FNLYANVRPCRSLEGYPTLY---DDVDVVTIRENTEGEYSGIEH---------------- 162
+LYAN+RP + +EG + + VD++ RENT+ Y GIE+
Sbjct: 118 LDLYANIRPVKYIEGLESPLKHPEKVDMIIFRENTDDLYRGIEYPFNSEEAKKIRDFLRK 177
Query: 163 ----EIVDGVVQSIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLF--- 215
EI D IK++++ + R+ A +YA + R KVT +HK N+M+ ++G F
Sbjct: 178 ELKVEIEDDTGIGIKVMSKYKTQRITRLAIQYAIEHKRKKVTIMHKGNVMKYTEGAFREW 237
Query: 216 -----LRCCRD---AAEKFPEVKFEEKYL---DTVCLNMVQD----PTQYDVLVMPNLYG 260
L+ RD E+ + K ++ + D + NM Q P +YD+++ PN+ G
Sbjct: 238 AYEVALKEYRDFIVTEEEINQGKPDQGKIILNDRIADNMFQQIIIRPEEYDIILAPNVNG 297
Query: 261 DILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGTAPDIAGKDLANPTALLLSAVMMLRH 320
D +SD L+G +G+ NIG G +FE++HGTAP AGK++ANPT ++ + +MLR
Sbjct: 298 DYISDAAGALIGNIGMLGGANIGDEGGMFEAIHGTAPKYAGKNVANPTGIIKAGELMLRW 357
Query: 321 LDLNTHADVIQKAALDTIKEGK 342
+ N AD+I+KA I++ K
Sbjct: 358 MGWNEAADLIEKAINMAIRDKK 379
>pdb|1CM7|A Chain A, 3-Isopropylmalate Dehydrogenase From Escherichia Coli
pdb|1CM7|B Chain B, 3-Isopropylmalate Dehydrogenase From Escherichia Coli
Length = 363
Score = 147 bits (370), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 98/271 (36%), Positives = 156/271 (57%), Gaps = 25/271 (9%)
Query: 115 ERGASV----EFNLYANVRPCR---SLEGYPTLYDDV-----DVVTIRENTEGEYSGIEH 162
ERGA + F L++N+RP + LE + L D+ D++ +RE T G Y G +
Sbjct: 91 ERGALLPLRKHFKLFSNLRPAKLYQGLEAFCPLRADIAANGFDILCVRELTGGIYFG-QP 149
Query: 163 EIVDGVVQSIKLITEEAS-----SRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLR 217
+ +G Q K E R+A AFE A+ R KVT++ KAN+++ S L+
Sbjct: 150 KGREGSGQYEKAFDTEVYHRFEIERIARIAFESAR-KRRHKVTSIDKANVLQ-SSILWRE 207
Query: 218 CCRDAAEKFPEVKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLT 277
+ A ++P+V+ Y+D + +++DP+Q+DVL+ NL+GDILSD CA + G +G+
Sbjct: 208 IVNEIATEYPDVELAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGML 267
Query: 278 PSGNIGLNG-ALFESVHGTAPDIAGKDLANPTALLLSAVMMLRH-LDLNTHADVIQKAAL 335
PS ++ G L+E G+APDIAGK++ANP A +LS ++LR+ LD + A I++A
Sbjct: 268 PSASLNEQGFGLYEPAGGSAPDIAGKNIANPIAQILSLALLLRYSLDADDAACAIERAIN 327
Query: 336 DTIKEGKYRTGDL--GGKAKCSEFTNEICSK 364
++EG RTGDL G A ++ +I ++
Sbjct: 328 RALEEG-IRTGDLARGAAAVSTDEMGDIIAR 357
>pdb|1A05|A Chain A, Crystal Structure Of The Complex Of 3-Isopropylmalate
Dehydrogenase From Thiobacillus Ferrooxidans With 3-
Isopropylmalate
pdb|1A05|B Chain B, Crystal Structure Of The Complex Of 3-Isopropylmalate
Dehydrogenase From Thiobacillus Ferrooxidans With 3-
Isopropylmalate
Length = 358
Score = 145 bits (367), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 133/239 (55%), Gaps = 15/239 (6%)
Query: 122 FNLYANVRPCRSLEGY-------PTLYDDVDVVTIRENTEGEYSGIEH--EIVDGVVQSI 172
+LYAN+RP + P L DVD++ +RE T Y G E++DG +
Sbjct: 98 LDLYANLRPAQIFPQLLDASPLRPELVRDVDILVVRELTGDIYFGQPRGLEVIDGKRRGF 157
Query: 173 KLIT--EEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVK 230
+ E+ R+A AF A+ R ++ +V KAN++ + L+ + A +P+V+
Sbjct: 158 NTMVYDEDEIRRIAHVAFRAAQ-GRRKQLCSVDKANVLETTR-LWREVVTEVARDYPDVR 215
Query: 231 FEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFE 290
Y+D + +++ P Q+DVL+ N++GDILSD + L G +G+ PS ++G A++E
Sbjct: 216 LSHMYVDNAAMQLIRAPAQFDVLLTGNMFGDILSDEASQLTGSIGMLPSASLGEGRAMYE 275
Query: 291 SVHGTAPDIAGKDLANPTALLLSAVMMLRH-LDLNTHADVIQKAALDTIKEGKYRTGDL 348
+HG+APDIAG+D ANP A +LS MMLRH L+ A ++ A + +G RT D+
Sbjct: 276 PIHGSAPDIAGQDKANPLATILSVAMMLRHSLNAEPWAQRVEAAVQRVLDQG-LRTADI 333
>pdb|2IV0|A Chain A, Thermal Stability Of Isocitrate Dehydrogenase From
Archaeoglobus Fulgidus Studied By Crystal Structure
Analysis And Engineering Of Chimers
pdb|2IV0|B Chain B, Thermal Stability Of Isocitrate Dehydrogenase From
Archaeoglobus Fulgidus Studied By Crystal Structure
Analysis And Engineering Of Chimers
Length = 412
Score = 145 bits (367), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 112/323 (34%), Positives = 151/323 (46%), Gaps = 73/323 (22%)
Query: 45 SWRGLKVQGLGEFNLYANVRPCRSLEGYPTLY---DDVDVVTIRENTEGEYSGIEHEIVD 101
+R L V +LYANVRP L+G P+ + V+ V RENTE Y+GIE
Sbjct: 106 GYRSLNVTIRQVLDLYANVRPVYYLKGVPSPIKHPEKVNFVIFRENTEDVYAGIE----- 160
Query: 102 GVCNSNYATKWFSERGASVEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIE 161
W RG+ L +R ++ G VTIRE+ SGI
Sbjct: 161 ----------W--PRGSEEALKL---IRFLKNEFG----------VTIRED-----SGI- 189
Query: 162 HEIVDGVVQSIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRD 221
IK I+E A+ R+ A YA NNR VT VHK NIM+ ++G F +
Sbjct: 190 ---------GIKPISEFATKRLVRMAIRYAIENNRKSVTLVHKGNIMKYTEGAFRDWGYE 240
Query: 222 AAE-------------------KFPEVKFEEKYLDTVCLNMVQD----PTQYDVLVMPNL 258
A+ K PE K K D + NM Q +YDV+ +PNL
Sbjct: 241 VAKQEFGEYCITEDELWDKYGGKQPEGKIVVK--DRIADNMFQQILTRTDEYDVIALPNL 298
Query: 259 YGDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGTAPDIAGKDLANPTALLLSAVMML 318
GD LSD A L+GGLG+ P NIG +FE VHG+AP AG++ NPTA +L+ +M
Sbjct: 299 NGDYLSDAAAALIGGLGIAPGSNIGDGIGVFEPVHGSAPKYAGQNKVNPTAEILTGALMF 358
Query: 319 RHLDLNTHADVIQKAALDTIKEG 341
++ +++I+KA TI G
Sbjct: 359 EYIGWKDASEMIKKAVEMTISSG 381
>pdb|1V5B|A Chain A, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|B Chain B, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|C Chain C, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|D Chain D, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|E Chain E, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|F Chain F, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|G Chain G, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|H Chain H, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
Length = 366
Score = 144 bits (363), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 94/272 (34%), Positives = 149/272 (54%), Gaps = 35/272 (12%)
Query: 117 GASVEFNLYANVRPCRSLEGYPTLY----------DDVDVVTIRENTEGEYSGI------ 160
G E L+AN+RP ++ Y TL ++VD+V +RE T G Y G
Sbjct: 94 GLRKEMGLFANLRPVKA---YATLLNASPLKRERVENVDLVIVRELTGGLYFGRPSERRG 150
Query: 161 --EHEIVDGVVQSIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRC 218
E+E+VD + T E R+ E AF+ A+ R K+ +V KAN++ S ++
Sbjct: 151 PGENEVVDTLA-----YTREEIERIIEKAFQLAQIR-RKKLASVDKANVLE-SSRMWREI 203
Query: 219 CRDAAEKFPEVKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTP 278
+ A+K+P+V+ +D+ + ++ +P Q+DV+V N++GDILSD+ + + G LG+ P
Sbjct: 204 AEETAKKYPDVELSHMLVDSTAMQLIANPGQFDVIVTENMFGDILSDLASVITGSLGMLP 263
Query: 279 SGNIGLNG-ALFESVHGTAPDIAGKDLANPTALLLSAVMMLRH-LDLNTHADVIQKAALD 336
S ++ + ++E VHG+APDIAG+ ANP +LSA +MLR+ L A I+KA D
Sbjct: 264 SASLRSDRFGMYEPVHGSAPDIAGQGKANPLGTVLSAALMLRYSFGLEKEAAAIEKAVDD 323
Query: 337 TIKEGKYRTGDL----GGKAKCSEFTNEICSK 364
+++G Y TGDL G E T+ + K
Sbjct: 324 VLQDG-YCTGDLQVANGKVVSTIELTDRLIEK 354
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 57/140 (40%), Gaps = 32/140 (22%)
Query: 56 EFNLYANVRPCRSLEGYPTLY----------DDVDVVTIRENTEGEYSGI--------EH 97
E L+AN+RP ++ Y TL ++VD+V +RE T G Y G E+
Sbjct: 98 EMGLFANLRPVKA---YATLLNASPLKRERVENVDLVIVRELTGGLYFGRPSERRGPGEN 154
Query: 98 EIVDGVCNSNYATKWFSERG---ASVEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTE 154
E+VD + + + E+ A + A+V LE + I E T
Sbjct: 155 EVVDTLAYTREEIERIIEKAFQLAQIRRKKLASVDKANVLESSRMWRE------IAEETA 208
Query: 155 GEYSGIE--HEIVDGVVQSI 172
+Y +E H +VD +
Sbjct: 209 KKYPDVELSHMLVDSTAMQL 228
>pdb|3FLK|A Chain A, Crystal Structure Of Tartrate Dehydrogenase From
Pseudomonas Complex With Nadh, Oxalate And Metal Ion
pdb|3FLK|B Chain B, Crystal Structure Of Tartrate Dehydrogenase From
Pseudomonas Complex With Nadh, Oxalate And Metal Ion
pdb|3FLK|C Chain C, Crystal Structure Of Tartrate Dehydrogenase From
Pseudomonas Complex With Nadh, Oxalate And Metal Ion
pdb|3FLK|D Chain D, Crystal Structure Of Tartrate Dehydrogenase From
Pseudomonas Complex With Nadh, Oxalate And Metal Ion
Length = 364
Score = 143 bits (360), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 80/227 (35%), Positives = 122/227 (53%), Gaps = 12/227 (5%)
Query: 107 NYATKWFSERGASVEFNLYANVRPCRSLEGYPTLY-----DDVDVVTIRENTEGEYS--- 158
++ + W S EF+ Y N+RP R G P D+D V +RENTEGEYS
Sbjct: 86 DHISLWGSLLKFRREFDQYVNIRPVRLFPGVPCALANRKVGDIDFVVVRENTEGEYSSLG 145
Query: 159 GIEHEIVDG-VVQSIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLR 217
GI E + +V + T R+ ++AF+ A+ R VT+ K+N +S + +
Sbjct: 146 GIXFENTENEIVIQESIFTRRGVDRILKYAFDLAEKRERKHVTSATKSNGXAISXPYWDK 205
Query: 218 CCRDAAEKFPEVKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLT 277
A +P V ++++++D +C V P ++DV+V NL+GDILSD+ G +G+
Sbjct: 206 RTEAXAAHYPHVSWDKQHIDILCARFVLQPERFDVVVASNLFGDILSDLGPACAGTIGIA 265
Query: 278 PSGNIGLN---GALFESVHGTAPDIAGKDLANPTALLLSAVMMLRHL 321
PS N+ +LFE VHG+APDI GK++ANP A + S + L L
Sbjct: 266 PSANLNPERNFPSLFEPVHGSAPDIFGKNIANPIAXIWSGALXLEFL 312
>pdb|1HJ6|A Chain A, Isocitrate Dehydrogenase S113e Mutant Complexed With
Isopropylmalate, Nadp+ And Magnesium (Flash-Cooled)
pdb|7ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
pdb|8ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
Length = 416
Score = 142 bits (357), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 101/292 (34%), Positives = 138/292 (47%), Gaps = 51/292 (17%)
Query: 121 EFNLYANVRPCRSLEGYPTLYDD---VDVVTIRENTEGEYSGIEHEI----VDGVVQ--- 170
E +LY +RP R +G P+ D+V REN+E Y+GIE + + V++
Sbjct: 121 ELDLYICLRPVRYYQGTPSPVKHPELTDMVIFRENSEDIYAGIEWKADSADAEKVIKFLR 180
Query: 171 ----------------SIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGL 214
IK +EE + R+ A EYA N+R VT VHK NIM+ ++G
Sbjct: 181 EEMGVKKIRFPEHCGIGIKPCSEEGTKRLVRAAIEYAIANDRDSVTLVHKGNIMKFTEGA 240
Query: 215 FLRCCRD-AAEKF-------------------PEVKFEEKYLDTVCLNMVQDPTQYDVLV 254
F A E+F E+ ++ D ++ P +YDV+
Sbjct: 241 FKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFLQQILLRPAEYDVIA 300
Query: 255 MPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGTAPDIAGKDLANPTALLLSA 314
NL GD +SD A VGG+G+ P NIG ALFE+ HGTAP AG+D NP +++LSA
Sbjct: 301 CMNLNGDYISDALAAQVGGIGIAPGANIGDECALFEATHGTAPKYAGQDKVNPGSIILSA 360
Query: 315 VMMLRHLDLNTHADVIQKAALDTI--KEGKY---RTGDLGGKAKCSEFTNEI 361
MMLRH+ AD+I K I K Y R D KCSEF + I
Sbjct: 361 EMMLRHMGWTEAADLIVKGMEGAINAKTVTYDFERLMDGAKLLKCSEFGDAI 412
>pdb|4AJB|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Isocitrate, Magnesium(Ii) And
Thionadp
pdb|4AJC|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Alpha-Ketoglutarate, Calcium(Ii)
And Adenine Nucleotide Phosphate
pdb|4AJR|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Alpha-Ketoglutarate,
Magnesium(Ii) And Nadph - The Product Complex
pdb|4AJS|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Isocitrate, Magnesium(Ii),
Adenosine 2',5'-Biphosphate And
Ribosylnicotinamide-5'-Phosphate
Length = 416
Score = 142 bits (357), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 101/292 (34%), Positives = 138/292 (47%), Gaps = 51/292 (17%)
Query: 121 EFNLYANVRPCRSLEGYPTLYDD---VDVVTIRENTEGEYSGIEHEI----VDGVVQ--- 170
E +LY +RP R +G P+ D+V REN+E Y+GIE + + V++
Sbjct: 121 ELDLYICLRPVRYYQGTPSPVKHPELTDMVIFRENSEDIYAGIEWKADSADAEKVIKFLR 180
Query: 171 ----------------SIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGL 214
IK +EE + R+ A EYA N+R VT VHK NIM+ ++G
Sbjct: 181 EEMGVKKIRFPEHCGIGIKPCSEEGTKRLVRAAIEYAIANDRDSVTLVHKGNIMKFTEGA 240
Query: 215 FLRCCRD-AAEKF-------------------PEVKFEEKYLDTVCLNMVQDPTQYDVLV 254
F A E+F E+ ++ D ++ P +YDV+
Sbjct: 241 FKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFLQQILLRPAEYDVIA 300
Query: 255 MPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGTAPDIAGKDLANPTALLLSA 314
NL GD +SD A VGG+G+ P NIG ALFE+ HGTAP AG+D NP +++LSA
Sbjct: 301 CMNLNGDYISDALAAQVGGIGIAPGANIGDECALFEATHGTAPKYAGQDKVNPGSIILSA 360
Query: 315 VMMLRHLDLNTHADVIQKAALDTI--KEGKY---RTGDLGGKAKCSEFTNEI 361
MMLRH+ AD+I K I K Y R D KCSEF + I
Sbjct: 361 EMMLRHMGWTEAADLIVKGMEGAINAKTVTYDFERLMDGAKLLKCSEFGDAI 412
>pdb|1BL5|A Chain A, Isocitrate Dehydrogenase From E. Coli Single Turnover Laue
Structure Of Rate-limited Product Complex, 10 Msec Time
Resolution
Length = 414
Score = 142 bits (357), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 101/292 (34%), Positives = 138/292 (47%), Gaps = 51/292 (17%)
Query: 121 EFNLYANVRPCRSLEGYPTLYDD---VDVVTIRENTEGEYSGIEHEI----VDGVVQ--- 170
E +LY +RP R +G P+ D+V REN+E Y+GIE + + V++
Sbjct: 119 ELDLYICLRPVRYYQGTPSPVKHPELTDMVIFRENSEDIYAGIEWKADSADAEKVIKFLR 178
Query: 171 ----------------SIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGL 214
IK +EE + R+ A EYA N+R VT VHK NIM+ ++G
Sbjct: 179 EEMGVKKIRFPEHCGIGIKPCSEEGTKRLVRAAIEYAIANDRDSVTLVHKGNIMKFTEGA 238
Query: 215 FLRCCRD-AAEKF-------------------PEVKFEEKYLDTVCLNMVQDPTQYDVLV 254
F A E+F E+ ++ D ++ P +YDV+
Sbjct: 239 FKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFLQQILLRPAEYDVIA 298
Query: 255 MPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGTAPDIAGKDLANPTALLLSA 314
NL GD +SD A VGG+G+ P NIG ALFE+ HGTAP AG+D NP +++LSA
Sbjct: 299 CMNLNGDYISDALAAQVGGIGIAPGANIGDECALFEATHGTAPKYAGQDKVNPGSIILSA 358
Query: 315 VMMLRHLDLNTHADVIQKAALDTI--KEGKY---RTGDLGGKAKCSEFTNEI 361
MMLRH+ AD+I K I K Y R D KCSEF + I
Sbjct: 359 EMMLRHMGWTEAADLIVKGMEGAINAKTVTYDFERLMDGAKLLKCSEFGDAI 410
>pdb|1P8F|A Chain A, A Four Location Model To Explain The Stereospecificity Of
Proteins.
pdb|1PB1|A Chain A, A Four Location Model To Explain The Stereospecificity Of
Proteins.
pdb|1PB3|A Chain A, Sites Of Binding And Orientation In A Four Location Model
For Protein Stereospecificity.
pdb|1AI2|A Chain A, Isocitrate Dehydrogenase Complexed With Isocitrate, Nadp+,
And Calcium (flash-cooled)
pdb|1AI3|A Chain A, Orbital Steering In The Catalytic Power Of Enzymes: Small
Structural Changes With Large Catalytic Consequences
pdb|1IKA|A Chain A, Structure Of Isocitrate Dehydrogenase With
Alpha-Ketoglutarate At 2.7 Angstroms Resolution:
Conformational Changes Induced By Decarboxylation Of
Isocitrate
pdb|1SJS|A Chain A, Access To Phosphorylation In Isocitrate Dehydrogenase May
Occur By Domain Shifting
pdb|3ICD|A Chain A, Structure Of A Bacterial Enzyme Regulated By
Phosphorylation, Isocitrate Dehydrogenase
pdb|5ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
pdb|9ICD|A Chain A, Catalytic Mechanism Of Nadp+-Dependent Isocitrate
Dehydrogenase: Implications From The Structures Of
Magnesium-Isocitrate And Nadp+ Complexes
pdb|3LCB|C Chain C, The Crystal Structure Of Isocitrate Dehydrogenase
KinasePHOSPHATASE In Complex With Its Substrate,
Isocitrate Dehydrogenase, From Escherichia Coli.
pdb|3LCB|D Chain D, The Crystal Structure Of Isocitrate Dehydrogenase
KinasePHOSPHATASE In Complex With Its Substrate,
Isocitrate Dehydrogenase, From Escherichia Coli.
pdb|4AJ3|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase In
Complex With Isocitrate, Calcium(Ii) And Nadp - The
Pseudo-Michaelis Complex
pdb|4AJA|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase In
Complex With Isocitrate, Calcium(Ii) And Thionadp
Length = 416
Score = 142 bits (357), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 101/292 (34%), Positives = 138/292 (47%), Gaps = 51/292 (17%)
Query: 121 EFNLYANVRPCRSLEGYPTLYDD---VDVVTIRENTEGEYSGIEHEI----VDGVVQ--- 170
E +LY +RP R +G P+ D+V REN+E Y+GIE + + V++
Sbjct: 121 ELDLYICLRPVRYYQGTPSPVKHPELTDMVIFRENSEDIYAGIEWKADSADAEKVIKFLR 180
Query: 171 ----------------SIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGL 214
IK +EE + R+ A EYA N+R VT VHK NIM+ ++G
Sbjct: 181 EEMGVKKIRFPEHCGIGIKPCSEEGTKRLVRAAIEYAIANDRDSVTLVHKGNIMKFTEGA 240
Query: 215 FLRCCRD-AAEKF-------------------PEVKFEEKYLDTVCLNMVQDPTQYDVLV 254
F A E+F E+ ++ D ++ P +YDV+
Sbjct: 241 FKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFLQQILLRPAEYDVIA 300
Query: 255 MPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGTAPDIAGKDLANPTALLLSA 314
NL GD +SD A VGG+G+ P NIG ALFE+ HGTAP AG+D NP +++LSA
Sbjct: 301 CMNLNGDYISDALAAQVGGIGIAPGANIGDECALFEATHGTAPKYAGQDKVNPGSIILSA 360
Query: 315 VMMLRHLDLNTHADVIQKAALDTI--KEGKY---RTGDLGGKAKCSEFTNEI 361
MMLRH+ AD+I K I K Y R D KCSEF + I
Sbjct: 361 EMMLRHMGWTEAADLIVKGMEGAINAKTVTYDFERLMDGAKLLKCSEFGDAI 412
>pdb|2AYQ|A Chain A, 3-Isopropylmalate Dehydrogenase From The Moderate
Facultative Thermophile, Bacillus Coagulans
pdb|2AYQ|B Chain B, 3-Isopropylmalate Dehydrogenase From The Moderate
Facultative Thermophile, Bacillus Coagulans
Length = 366
Score = 142 bits (357), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 94/272 (34%), Positives = 148/272 (54%), Gaps = 35/272 (12%)
Query: 117 GASVEFNLYANVRPCRSLEGYPTLY----------DDVDVVTIRENTEGEYSGI------ 160
G E L+AN+RP ++ Y TL ++VD+V +RE T G Y G
Sbjct: 94 GLRKEMGLFANLRPVKA---YATLLNASPLKRERVENVDLVIVRELTGGLYFGRPSERRG 150
Query: 161 --EHEIVDGVVQSIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRC 218
E+E+VD + T E R+ E AF+ A+ R K+ +V KAN++ S ++
Sbjct: 151 PGENEVVDTLA-----YTREEIERIIEKAFQLAQIR-RKKLASVDKANVLE-SSRMWREI 203
Query: 219 CRDAAEKFPEVKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTP 278
+ A+K+P+V+ +D+ + ++ +P Q+DV+V N++GDILSD + + G LG+ P
Sbjct: 204 AEETAKKYPDVELSHMLVDSTSMQLIANPGQFDVIVTENMFGDILSDEASVITGSLGMLP 263
Query: 279 SGNIGLNG-ALFESVHGTAPDIAGKDLANPTALLLSAVMMLRH-LDLNTHADVIQKAALD 336
S ++ + ++E VHG+APDIAG+ ANP +LSA +MLR+ L A I+KA D
Sbjct: 264 SASLRSDRFGMYEPVHGSAPDIAGQGKANPLGTVLSAALMLRYSFGLEKEAAAIEKAVDD 323
Query: 337 TIKEGKYRTGDL----GGKAKCSEFTNEICSK 364
+++G Y TGDL G E T+ + K
Sbjct: 324 VLQDG-YCTGDLQVANGKVVSTIELTDRLIEK 354
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 61/144 (42%), Gaps = 34/144 (23%)
Query: 56 EFNLYANVRPCRSLEGYPTLY----------DDVDVVTIRENTEGEYSGI--------EH 97
E L+AN+RP ++ Y TL ++VD+V +RE T G Y G E+
Sbjct: 98 EMGLFANLRPVKA---YATLLNASPLKRERVENVDLVIVRELTGGLYFGRPSERRGPGEN 154
Query: 98 EIVDGVCNSNYATKWFSERG---ASVEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTE 154
E+VD + + + E+ A + A+V LE + I E T
Sbjct: 155 EVVDTLAYTREEIERIIEKAFQLAQIRRKKLASVDKANVLESSRMWRE------IAEETA 208
Query: 155 GEYSGIE--HEIVDGVVQSIKLIT 176
+Y +E H +VD S++LI
Sbjct: 209 KKYPDVELSHMLVDST--SMQLIA 230
>pdb|1GRP|A Chain A, Regulatory And Catalytic Mechanisms In Escherichia Coli
Isocitrate Dehydrogenase: Multiple Roles For N115
Length = 416
Score = 142 bits (357), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 101/292 (34%), Positives = 138/292 (47%), Gaps = 51/292 (17%)
Query: 121 EFNLYANVRPCRSLEGYPTLYDD---VDVVTIRENTEGEYSGIEHEI----VDGVVQ--- 170
E +LY +RP R +G P+ D+V REN+E Y+GIE + + V++
Sbjct: 121 ELDLYICLRPVRYYQGTPSPVKHPELTDMVIFRENSEDIYAGIEWKADSADAEKVIKFLR 180
Query: 171 ----------------SIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGL 214
IK +EE + R+ A EYA N+R VT VHK NIM+ ++G
Sbjct: 181 EEMGVKKIRFPDHCGIGIKPCSEEGTKRLVRAAIEYAIANDRDSVTLVHKGNIMKFTEGA 240
Query: 215 FLRCCRD-AAEKF-------------------PEVKFEEKYLDTVCLNMVQDPTQYDVLV 254
F A E+F E+ ++ D ++ P +YDV+
Sbjct: 241 FKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFLQQILLRPAEYDVIA 300
Query: 255 MPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGTAPDIAGKDLANPTALLLSA 314
NL GD +SD A VGG+G+ P NIG ALFE+ HGTAP AG+D NP +++LSA
Sbjct: 301 CMNLNGDYISDALAAQVGGIGIAPGANIGDECALFEATHGTAPKYAGQDKVNPGSIILSA 360
Query: 315 VMMLRHLDLNTHADVIQKAALDTI--KEGKY---RTGDLGGKAKCSEFTNEI 361
MMLRH+ AD+I K I K Y R D KCSEF + I
Sbjct: 361 EMMLRHMGWTEAADLIVKGMEGAINAKTVTYDFERLMDGAKLLKCSEFGDAI 412
>pdb|6ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
Length = 416
Score = 142 bits (357), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 101/292 (34%), Positives = 138/292 (47%), Gaps = 51/292 (17%)
Query: 121 EFNLYANVRPCRSLEGYPTLYDD---VDVVTIRENTEGEYSGIEHEI----VDGVVQ--- 170
E +LY +RP R +G P+ D+V REN+E Y+GIE + + V++
Sbjct: 121 ELDLYICLRPVRYYQGTPSPVKHPELTDMVIFRENSEDIYAGIEWKADSADAEKVIKFLR 180
Query: 171 ----------------SIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGL 214
IK +EE + R+ A EYA N+R VT VHK NIM+ ++G
Sbjct: 181 EEMGVKKIRFPEHCGIGIKPCSEEGTKRLVRAAIEYAIANDRDSVTLVHKGNIMKFTEGA 240
Query: 215 FLRCCRD-AAEKF-------------------PEVKFEEKYLDTVCLNMVQDPTQYDVLV 254
F A E+F E+ ++ D ++ P +YDV+
Sbjct: 241 FKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFLQQILLRPAEYDVIA 300
Query: 255 MPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGTAPDIAGKDLANPTALLLSA 314
NL GD +SD A VGG+G+ P NIG ALFE+ HGTAP AG+D NP +++LSA
Sbjct: 301 CMNLNGDYISDALAAQVGGIGIAPGANIGDECALFEATHGTAPKYAGQDKVNPGSIILSA 360
Query: 315 VMMLRHLDLNTHADVIQKAALDTI--KEGKY---RTGDLGGKAKCSEFTNEI 361
MMLRH+ AD+I K I K Y R D KCSEF + I
Sbjct: 361 EMMLRHMGWTEAADLIVKGMEGAINAKTVTYDFERLMDGAKLLKCSEFGDAI 412
>pdb|4ICD|A Chain A, Regulation Of Isocitrate Dehydrogenase By Phosphorylation
Involves No Long-Range Conformational Change In The Free
Enzyme
Length = 416
Score = 142 bits (357), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 101/292 (34%), Positives = 138/292 (47%), Gaps = 51/292 (17%)
Query: 121 EFNLYANVRPCRSLEGYPTLYDD---VDVVTIRENTEGEYSGIEHEI----VDGVVQ--- 170
E +LY +RP R +G P+ D+V REN+E Y+GIE + + V++
Sbjct: 121 ELDLYICLRPVRYYQGTPSPVKHPELTDMVIFRENSEDIYAGIEWKADSADAEKVIKFLR 180
Query: 171 ----------------SIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGL 214
IK +EE + R+ A EYA N+R VT VHK NIM+ ++G
Sbjct: 181 EEMGVKKIRFPEHCGIGIKPCSEEGTKRLVRAAIEYAIANDRDSVTLVHKGNIMKFTEGA 240
Query: 215 FLRCCRD-AAEKF-------------------PEVKFEEKYLDTVCLNMVQDPTQYDVLV 254
F A E+F E+ ++ D ++ P +YDV+
Sbjct: 241 FKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFLQQILLRPAEYDVIA 300
Query: 255 MPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGTAPDIAGKDLANPTALLLSA 314
NL GD +SD A VGG+G+ P NIG ALFE+ HGTAP AG+D NP +++LSA
Sbjct: 301 CMNLNGDYISDALAAQVGGIGIAPGANIGDECALFEATHGTAPKYAGQDKVNPGSIILSA 360
Query: 315 VMMLRHLDLNTHADVIQKAALDTI--KEGKY---RTGDLGGKAKCSEFTNEI 361
MMLRH+ AD+I K I K Y R D KCSEF + I
Sbjct: 361 EMMLRHMGWTEAADLIVKGMEGAINAKTVTYDFERLMDGAKLLKCSEFGDAI 412
>pdb|1V53|A Chain A, The Crystal Structure Of 3-Isopropylmalate Dehydrogenase
From Bacillus Coagulans
pdb|1V53|B Chain B, The Crystal Structure Of 3-Isopropylmalate Dehydrogenase
From Bacillus Coagulans
Length = 366
Score = 142 bits (357), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 94/272 (34%), Positives = 148/272 (54%), Gaps = 35/272 (12%)
Query: 117 GASVEFNLYANVRPCRSLEGYPTLY----------DDVDVVTIRENTEGEYSGI------ 160
G E L+AN+RP ++ Y TL ++VD+V +RE T G Y G
Sbjct: 94 GLRKEMGLFANLRPVKA---YATLLNASPLKRERVENVDLVIVRELTGGLYFGRPSERRG 150
Query: 161 --EHEIVDGVVQSIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRC 218
E+E+VD + T E R+ E AF+ A+ R K+ +V KAN++ S ++
Sbjct: 151 PGENEVVDTLA-----YTREEIERIIEKAFQLAQIR-RKKLASVDKANVLE-SSRMWREI 203
Query: 219 CRDAAEKFPEVKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTP 278
+ A+K+P+V+ +D+ + ++ +P Q+DV+V N++GDILSD + + G LG+ P
Sbjct: 204 AEETAKKYPDVELSHMLVDSTSMQLIANPGQFDVIVTENMFGDILSDEASVITGSLGMLP 263
Query: 279 SGNIGLNG-ALFESVHGTAPDIAGKDLANPTALLLSAVMMLRH-LDLNTHADVIQKAALD 336
S ++ + ++E VHG+APDIAG+ ANP +LSA +MLR+ L A I+KA D
Sbjct: 264 SASLRSDRFGMYEPVHGSAPDIAGQGKANPLGTVLSAALMLRYSFGLEKEAAAIEKAVDD 323
Query: 337 TIKEGKYRTGDL----GGKAKCSEFTNEICSK 364
+++G Y TGDL G E T+ + K
Sbjct: 324 VLQDG-YCTGDLQVANGKVVSTIELTDRLIEK 354
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 61/144 (42%), Gaps = 34/144 (23%)
Query: 56 EFNLYANVRPCRSLEGYPTLY----------DDVDVVTIRENTEGEYSGI--------EH 97
E L+AN+RP ++ Y TL ++VD+V +RE T G Y G E+
Sbjct: 98 EMGLFANLRPVKA---YATLLNASPLKRERVENVDLVIVRELTGGLYFGRPSERRGPGEN 154
Query: 98 EIVDGVCNSNYATKWFSERG---ASVEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTE 154
E+VD + + + E+ A + A+V LE + I E T
Sbjct: 155 EVVDTLAYTREEIERIIEKAFQLAQIRRKKLASVDKANVLESSRMWRE------IAEETA 208
Query: 155 GEYSGIE--HEIVDGVVQSIKLIT 176
+Y +E H +VD S++LI
Sbjct: 209 KKYPDVELSHMLVDST--SMQLIA 230
>pdb|1GRO|A Chain A, Regulatory And Catalytic Mechanisms In Escherichia Coli
Isocitrate Dehydrogenase: Multiple Roles For N115
Length = 416
Score = 142 bits (357), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 101/292 (34%), Positives = 138/292 (47%), Gaps = 51/292 (17%)
Query: 121 EFNLYANVRPCRSLEGYPTLYDD---VDVVTIRENTEGEYSGIEHEI----VDGVVQ--- 170
E +LY +RP R +G P+ D+V REN+E Y+GIE + + V++
Sbjct: 121 ELDLYICLRPVRYYQGTPSPVKHPELTDMVIFRENSEDIYAGIEWKADSADAEKVIKFLR 180
Query: 171 ----------------SIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGL 214
IK +EE + R+ A EYA N+R VT VHK NIM+ ++G
Sbjct: 181 EEMGVKKIRFPDHCGIGIKPCSEEGTKRLVRAAIEYAIANDRDSVTLVHKGNIMKFTEGA 240
Query: 215 FLRCCRD-AAEKF-------------------PEVKFEEKYLDTVCLNMVQDPTQYDVLV 254
F A E+F E+ ++ D ++ P +YDV+
Sbjct: 241 FKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFLQQILLRPAEYDVIA 300
Query: 255 MPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGTAPDIAGKDLANPTALLLSA 314
NL GD +SD A VGG+G+ P NIG ALFE+ HGTAP AG+D NP +++LSA
Sbjct: 301 CMNLNGDYISDALAAQVGGIGIAPGANIGDECALFEATHGTAPKYAGQDKVNPGSIILSA 360
Query: 315 VMMLRHLDLNTHADVIQKAALDTI--KEGKY---RTGDLGGKAKCSEFTNEI 361
MMLRH+ AD+I K I K Y R D KCSEF + I
Sbjct: 361 EMMLRHMGWTEAADLIVKGMEGAINAKTVTYDFERLMDGAKLLKCSEFGDAI 412
>pdb|1CW7|A Chain A, Low Temperature Structure Of Wild-Type Idh Complexed With
Mg- Isocitrate
Length = 416
Score = 141 bits (356), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 101/292 (34%), Positives = 138/292 (47%), Gaps = 51/292 (17%)
Query: 121 EFNLYANVRPCRSLEGYPTLYDD---VDVVTIRENTEGEYSGIEHEI----VDGVVQ--- 170
E +LY +RP R +G P+ D+V REN+E Y+GIE + + V++
Sbjct: 121 ELDLYICLRPVRYYQGTPSPVKHPELTDMVIFRENSEDIYAGIEWKADSADAEKVIKFLR 180
Query: 171 ----------------SIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGL 214
IK +EE + R+ A EYA N+R VT VHK NIM+ ++G
Sbjct: 181 EEMGVKKIRFPEHCGIGIKPCSEEGTKRLVRAAIEYAIANDRDSVTLVHKGNIMKFTEGA 240
Query: 215 FLRCCRD-AAEKF-------------------PEVKFEEKYLDTVCLNMVQDPTQYDVLV 254
F A E+F E+ ++ D ++ P +YDV+
Sbjct: 241 FKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFLQQILLRPAEYDVIA 300
Query: 255 MPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGTAPDIAGKDLANPTALLLSA 314
NL GD +SD A VGG+G+ P NIG ALFE+ HGTAP AG+D NP +++LSA
Sbjct: 301 CMNLNGDYISDALAAQVGGIGIAPGANIGDECALFEATHGTAPAYAGQDKVNPGSIILSA 360
Query: 315 VMMLRHLDLNTHADVIQKAALDTI--KEGKY---RTGDLGGKAKCSEFTNEI 361
MMLRH+ AD+I K I K Y R D KCSEF + I
Sbjct: 361 EMMLRHMGWTEAADLIVKGMEGAINAKTVTYDFERLMDGAKLLKCSEFGDAI 412
>pdb|1IDD|A Chain A, Isocitrate Dehydrogenase Y160f Mutant Apo Enzyme
pdb|1IDE|A Chain A, Isocitrate Dehydrogenase Y160f Mutant Steady-State
Intermediate Complex (Laue Determination)
Length = 416
Score = 140 bits (354), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 100/292 (34%), Positives = 138/292 (47%), Gaps = 51/292 (17%)
Query: 121 EFNLYANVRPCRSLEGYPTLYDD---VDVVTIRENTEGEYSGIEHEI----VDGVVQ--- 170
E +LY +RP R +G P+ D+V REN+E ++GIE + + V++
Sbjct: 121 ELDLYICLRPVRYYQGTPSPVKHPELTDMVIFRENSEDIFAGIEWKADSADAEKVIKFLR 180
Query: 171 ----------------SIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGL 214
IK +EE + R+ A EYA N+R VT VHK NIM+ ++G
Sbjct: 181 EEMGVKKIRFPEHCGIGIKPCSEEGTKRLVRAAIEYAIANDRDSVTLVHKGNIMKFTEGA 240
Query: 215 FLRCCRD-AAEKF-------------------PEVKFEEKYLDTVCLNMVQDPTQYDVLV 254
F A E+F E+ ++ D ++ P +YDV+
Sbjct: 241 FKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFLQQILLRPAEYDVIA 300
Query: 255 MPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGTAPDIAGKDLANPTALLLSA 314
NL GD +SD A VGG+G+ P NIG ALFE+ HGTAP AG+D NP +++LSA
Sbjct: 301 CMNLNGDYISDALAAQVGGIGIAPGANIGDECALFEATHGTAPKYAGQDKVNPGSIILSA 360
Query: 315 VMMLRHLDLNTHADVIQKAALDTI--KEGKY---RTGDLGGKAKCSEFTNEI 361
MMLRH+ AD+I K I K Y R D KCSEF + I
Sbjct: 361 EMMLRHMGWTEAADLIVKGMEGAINAKTVTYDFERLMDGAKLLKCSEFGDAI 412
>pdb|3DMS|A Chain A, 1.65a Crystal Structure Of Isocitrate Dehydrogenase From
Burkholderia Pseudomallei
Length = 427
Score = 139 bits (351), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 90/268 (33%), Positives = 132/268 (49%), Gaps = 46/268 (17%)
Query: 121 EFNLYANVRPCRSLEGYPTLY---DDVDVVTIRENTEGEYSGIE----HEIVDGVVQ--- 170
E +LY +RP + +G P+ + ++V REN+E Y+GIE E V++
Sbjct: 131 ELDLYVCLRPIQYFKGVPSPVREPEKTNMVIFRENSEDIYAGIEWAAESEQAKKVIKFLQ 190
Query: 171 ----------------SIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGL 214
IK +++E + R+ A +YA N+R VT VHK NIM+ ++G
Sbjct: 191 EEMGVKKIRFPQTSGIGIKPVSKEGTERLVRKAIQYAIDNDRKSVTLVHKGNIMKFTEGA 250
Query: 215 FLRCCRDAAEK---------FPEVKFE-----------EKYLDTVCLNMVQDPTQYDVLV 254
F A+K P +KF+ + D ++ P +YDV+
Sbjct: 251 FRDAGYALAQKEFGAELIDGGPWMKFKNPKTGNEIVVKDSIADAFLQQILLRPAEYDVIA 310
Query: 255 MPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGTAPDIAGKDLANPTALLLSA 314
NL GD +SD A VGG+G+ P N+ + A+FE+ HGTAP AGKD NP + +LSA
Sbjct: 311 TLNLNGDYISDALAAQVGGIGIAPGANLSDSVAMFEATHGTAPKYAGKDYVNPGSEILSA 370
Query: 315 VMMLRHLDLNTHADVIQKAALDTIKEGK 342
MMLRHL ADVI A +IK+ +
Sbjct: 371 EMMLRHLGWTEAADVIISAMEKSIKQKR 398
>pdb|1CW1|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase Mutant K230m
Bound To Isocitrate And Mn2+
pdb|1CW4|A Chain A, Crystal Structure Of K230m Isocitrate Dehydrogenase In
Complex With Alpha-Ketoglutarate
pdb|1IDC|A Chain A, Isocitrate Dehydrogenase From E.coli (mutant K230m),
Steady-state Intermediate Complex Determined By Laue
Crystallography
pdb|1IDF|A Chain A, Isocitrate Dehydrogenase K230m Mutant Apo Enzyme
Length = 416
Score = 139 bits (351), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 100/292 (34%), Positives = 137/292 (46%), Gaps = 51/292 (17%)
Query: 121 EFNLYANVRPCRSLEGYPTLYDD---VDVVTIRENTEGEYSGIEHEI----VDGVVQ--- 170
E +LY +RP R +G P+ D+V REN+E Y+GIE + + V++
Sbjct: 121 ELDLYICLRPVRYYQGTPSPVKHPELTDMVIFRENSEDIYAGIEWKADSADAEKVIKFLR 180
Query: 171 ----------------SIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGL 214
IK +EE + R+ A EYA N+R VT VH NIM+ ++G
Sbjct: 181 EEMGVKKIRFPEHCGIGIKPCSEEGTKRLVRAAIEYAIANDRDSVTLVHMGNIMKFTEGA 240
Query: 215 FLRCCRD-AAEKF-------------------PEVKFEEKYLDTVCLNMVQDPTQYDVLV 254
F A E+F E+ ++ D ++ P +YDV+
Sbjct: 241 FKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFLQQILLRPAEYDVIA 300
Query: 255 MPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGTAPDIAGKDLANPTALLLSA 314
NL GD +SD A VGG+G+ P NIG ALFE+ HGTAP AG+D NP +++LSA
Sbjct: 301 CMNLNGDYISDALAAQVGGIGIAPGANIGDECALFEATHGTAPKYAGQDKVNPGSIILSA 360
Query: 315 VMMLRHLDLNTHADVIQKAALDTI--KEGKY---RTGDLGGKAKCSEFTNEI 361
MMLRH+ AD+I K I K Y R D KCSEF + I
Sbjct: 361 EMMLRHMGWTEAADLIVKGMEGAINAKTVTYDFERLMDGAKLLKCSEFGDAI 412
>pdb|1HQS|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Bacillus Subtilis
pdb|1HQS|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Bacillus Subtilis
Length = 423
Score = 139 bits (349), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 98/308 (31%), Positives = 141/308 (45%), Gaps = 66/308 (21%)
Query: 121 EFNLYANVRPCRSLEGYPTLY---DDVDVVTIRENTEGEYSGIEHEIVDGVVQS------ 171
E +L+ +RP R G P+ +D D+V RENTE Y+GIE+ VQ
Sbjct: 112 ELDLFVXLRPVRYFTGVPSPVKRPEDTDMVIFRENTEDIYAGIEYAKGSEEVQKLISFLQ 171
Query: 172 -----------------IKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGL 214
IK ++EE +SR+ A +YA + R VT VHK NIM+ ++G
Sbjct: 172 NELNVNKIRFPETSGIGIKPVSEEGTSRLVRAAIDYAIEHGRKSVTLVHKGNIMKFTEGA 231
Query: 215 FLRCCRDAAEK------FPEVKFE---------------------------EKYLDTVCL 241
F + AEK F +++ + D
Sbjct: 232 FKNWGYELAEKEYGDKVFTWAQYDRIAEEQGKDAANKAQSEAEAAGKIIIKDSIADIFLQ 291
Query: 242 NMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGL--NGALFESVHGTAPDI 299
++ P ++DV+ NL GD +SD A VGG+G+ P NI A+FE+ HGTAP
Sbjct: 292 QILTRPNEFDVVATMNLNGDYISDALAAQVGGIGIAPGANINYETGHAIFEATHGTAPKY 351
Query: 300 AGKDLANPTALLLSAVMMLRHLDLNTHADVIQKAALDTI--KEGKY---RTGDLGGKAKC 354
AG D NP++++LS V++L HL N AD++ K+ TI K Y R D + KC
Sbjct: 352 AGLDKVNPSSVILSGVLLLEHLGWNEAADLVIKSMEKTIASKVVTYDFARLMDGATEVKC 411
Query: 355 SEFTNEIC 362
SEF E+
Sbjct: 412 SEFGEELI 419
>pdb|3VKZ|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At Atmospheric Pressure
pdb|3VL2|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 160 Mpa
pdb|3VL3|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 340 Mpa
pdb|3VL4|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 410 Mpa
pdb|3VL6|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 580 Mpa
pdb|3VL7|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 650 Mpa
pdb|3VMJ|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1
Length = 375
Score = 138 bits (348), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 98/257 (38%), Positives = 138/257 (53%), Gaps = 31/257 (12%)
Query: 115 ERGASV----EFNLYANVRPCR---SLEGYPTLYDDV-----DVVTIRENTEGEY----- 157
ERGA + F L+ N+RP + LE L D+ DV+ +RE T G Y
Sbjct: 100 ERGALLPLRGHFELFCNLRPAKLHDGLEHMSPLRSDISARGFDVLCVRELTGGIYFGKPK 159
Query: 158 ----SGIEHEIVDGVVQSIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDG 213
G E D + S + I SR+A AFE A+ R KVT+V KAN++ S
Sbjct: 160 GRQGEGESEEAFDTMRYSRREI-----SRIARIAFEAAR-GRRKKVTSVDKANVLACSV- 212
Query: 214 LFLRCCRDAAEKFPEVKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGG 273
L+ + + A FP+V+ E Y+D + +++ P ++DV++ NL+GDILSD A L G
Sbjct: 213 LWRQVVEEVAVDFPDVELEHIYIDNATMQLLRRPDEFDVMLCSNLFGDILSDEIAMLTGS 272
Query: 274 LGLTPSGNIGLNG-ALFESVHGTAPDIAGKDLANPTALLLSAVMMLRH-LDLNTHADVIQ 331
+GL S ++ G LFE G+APDIAGK +ANP A +LSA +MLRH L A I+
Sbjct: 273 MGLLSSASMNSTGFGLFEPAGGSAPDIAGKGIANPIAQILSAALMLRHSLKQEEAASAIE 332
Query: 332 KAALDTIKEGKYRTGDL 348
+A + G Y TG+L
Sbjct: 333 RAVTKALNSG-YLTGEL 348
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 8/56 (14%)
Query: 47 RGLKVQGLGEFNLYANVRPCR---SLEGYPTLYDDV-----DVVTIRENTEGEYSG 94
RG + G F L+ N+RP + LE L D+ DV+ +RE T G Y G
Sbjct: 101 RGALLPLRGHFELFCNLRPAKLHDGLEHMSPLRSDISARGFDVLCVRELTGGIYFG 156
>pdb|1V94|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Aeropyrum Pernix
pdb|1V94|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Aeropyrum Pernix
pdb|1TYO|A Chain A, Isocitrate Dehydrogenase From The Hyperthermophile
Aeropyrum Pernix In Complex With Etheno-Nadp
pdb|1TYO|B Chain B, Isocitrate Dehydrogenase From The Hyperthermophile
Aeropyrum Pernix In Complex With Etheno-Nadp
pdb|1XGV|A Chain A, Isocitrate Dehydrogenase From The Hyperthermophile
Aeropyrum Pernix
pdb|1XGV|B Chain B, Isocitrate Dehydrogenase From The Hyperthermophile
Aeropyrum Pernix
pdb|1XKD|A Chain A, Ternary Complex Of Isocitrate Dehydrogenase From The
Hyperthermophile Aeropyrum Pernix
pdb|1XKD|B Chain B, Ternary Complex Of Isocitrate Dehydrogenase From The
Hyperthermophile Aeropyrum Pernix
Length = 435
Score = 135 bits (341), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 102/292 (34%), Positives = 143/292 (48%), Gaps = 51/292 (17%)
Query: 122 FNLYANVRPCRSLEGYPTLY---DDVDVVTIRENTEGEYSGIE--HE------------- 163
+LYAN+RP R G P + D VD+V RENTE Y+GIE H+
Sbjct: 129 LDLYANIRPVRYY-GQPAPHKYADRVDMVIFRENTEDVYAGIEWPHDSPEAARIRRFLAE 187
Query: 164 -----IVDGVVQSIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRC 218
I + +K I+ A+ R+ E A E+A N + VT +HK NIM+ ++G F+R
Sbjct: 188 EFGISIREDAGIGVKPISRFATRRLMERALEWALRNGNTVVTIMHKGNIMKYTEGAFMRW 247
Query: 219 CRDAA-EKFPE--------------VKFEEKYL--DTVCLNMVQD----PTQYDVLVMPN 257
+ A EKF E V+ E K L D + NM+Q P Y V+V PN
Sbjct: 248 AYEVALEKFREHVVTEQEVQEKYGGVRPEGKILVNDRIADNMLQQIITRPWDYQVIVAPN 307
Query: 258 LYGDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGTAPDIAGKDLANPTALLLSAVMM 317
L GD +SD + LVGG+G+ N+G A+ E VHGTAP AGKDL NP+A +LSA ++
Sbjct: 308 LNGDYISDAASALVGGIGMAAGMNMGDGIAVAEPVHGTAPKYAGKDLINPSAEILSASLL 367
Query: 318 LRHLDLNTHADVIQKAALDTIKEGKYRTGDLGGKA------KCSEFTNEICS 363
+ I + A+ + K T DL + SE+T + +
Sbjct: 368 IGEFMGWREVKSIVEYAIRKAVQSKKVTQDLARHMPGVQPLRTSEYTETLIA 419
>pdb|3R8W|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2
From Arabidopsis Thaliana At 2.2 Angstrom Resolution
pdb|3R8W|B Chain B, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2
From Arabidopsis Thaliana At 2.2 Angstrom Resolution
pdb|3R8W|C Chain C, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2
From Arabidopsis Thaliana At 2.2 Angstrom Resolution
pdb|3R8W|D Chain D, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2
From Arabidopsis Thaliana At 2.2 Angstrom Resolution
Length = 405
Score = 133 bits (335), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 91/261 (34%), Positives = 140/261 (53%), Gaps = 27/261 (10%)
Query: 122 FNLYANVRPCRSLEGYPTLYD----------DVDVVTIRENTEGEYSGIEHEIV-----D 166
++AN+RP L P L D VD++ +RE T G Y G I +
Sbjct: 139 LKVFANLRPATVL---PQLVDASTLKREVAEGVDLMVVRELTGGIYFGEPRGIKTNENGE 195
Query: 167 GVVQSIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKF 226
V + ++ R+A AFE A+ R K+ +V KAN++ S L+ + A ++
Sbjct: 196 EVGFNTEVYAAHEIDRIARVAFETAR-KRRGKLCSVDKANVLEASI-LWRKRVTALASEY 253
Query: 227 PEVKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNG 286
P+V+ Y+D + +V+DP Q+D +V N++GDILSD + + G +G+ PS ++ +G
Sbjct: 254 PDVELSHMYVDNAAMQLVRDPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLSDSG 313
Query: 287 -ALFESVHGTAPDIAGKDLANPTALLLSAVMMLRH-LDLNTHADVIQKAALDTIKEGKYR 344
LFE +HG+APDIAG+D ANP A +LSA M+L++ L A I+ A L + G +R
Sbjct: 314 PGLFEPIHGSAPDIAGQDKANPLATILSAAMLLKYGLGEEKAAKRIEDAVLVALNNG-FR 372
Query: 345 TGDL---GGK-AKCSEFTNEI 361
TGD+ G K C E E+
Sbjct: 373 TGDIYSAGTKLVGCKEMGEEV 393
>pdb|2D4V|A Chain A, Crystal Structure Of Nad Dependent Isocitrate
Dehydrogenase From Acidithiobacillus Thiooxidans
pdb|2D4V|B Chain B, Crystal Structure Of Nad Dependent Isocitrate
Dehydrogenase From Acidithiobacillus Thiooxidans
pdb|2D4V|C Chain C, Crystal Structure Of Nad Dependent Isocitrate
Dehydrogenase From Acidithiobacillus Thiooxidans
pdb|2D4V|D Chain D, Crystal Structure Of Nad Dependent Isocitrate
Dehydrogenase From Acidithiobacillus Thiooxidans
Length = 429
Score = 132 bits (331), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 103/334 (30%), Positives = 145/334 (43%), Gaps = 76/334 (22%)
Query: 78 DVDVVTIRENTEGEYSGIEHEIVDGVCNSNYATKWFSERGASVEFNLYANVRPCRSLEGY 137
D + IRE +E + G+ + N A + + +LY +RP R EG
Sbjct: 86 DETMAAIREYKVAIKGPLETPVGGGIRSLNVAMRQ--------DLDLYVCLRPVRYFEGT 137
Query: 138 PTLY---DDVDVVTIRENTEGEYSGIE--------HEIV---------------DGVVQS 171
P+ + VD+V REN+E Y+GIE +I+ D
Sbjct: 138 PSPMRHPEKVDMVIFRENSEDIYAGIEWPAGSPEAEKIIRFLREEMGVTKIRFPDSSAIG 197
Query: 172 IKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKF 231
IK ++ E S R+ +YA + + V+ VHK NIM+ ++G F RD E +F
Sbjct: 198 IKPVSTEGSERLIRRTIQYALEHGKPSVSLVHKGNIMKFTEGGF----RDWGYALAEREF 253
Query: 232 EEKYL---------------------------------DTVCLNMVQD----PTQYDVLV 254
+ D + N +Q P Y V+
Sbjct: 254 AGRVFTWRQKAAISKAEGKAAGQKAEQQAIADGKLIIKDVIADNFLQQILLRPEDYSVVA 313
Query: 255 MPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGTAPDIAGKDLANPTALLLSA 314
NL GD +SD A VGG+G+ P N+ A+FE+ HGTAPDIAG+ ANP++L+LSA
Sbjct: 314 TLNLNGDYVSDALAAEVGGIGMAPGANLSDTHAIFEATHGTAPDIAGQGKANPSSLILSA 373
Query: 315 VMMLRHLDLNTHADVIQKAALDTIKEGKYRTGDL 348
VMML HL A I A TI G+ TGDL
Sbjct: 374 VMMLEHLGWGEAAQAIVAAMNATIAAGEV-TGDL 406
>pdb|3VML|A Chain A, Chimera 3-Isopropylmalate Dehydrogenase Between Shewanella
Oneidensis Mr-1 (O) And Shewanella Benthica Db21 Mt-2
(M) From N-Terminal: 20% O Middle 70% M Residual 10% O
Length = 375
Score = 128 bits (322), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 92/257 (35%), Positives = 138/257 (53%), Gaps = 31/257 (12%)
Query: 115 ERGASV----EFNLYANVRPCR---SLEGYPTLYDDV-----DVVTIRENTEGEY----- 157
ERGA + F L+ N+RP + LE L D+ D++ +RE T G Y
Sbjct: 100 ERGALLPLRGHFELFCNMRPAKLHPGLEHMSPLRSDISEKGFDILCVRELTGGIYFGKPK 159
Query: 158 ----SGIEHEIVDGVVQSIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDG 213
G E D + S K I R+A+ AFE A+ R KVT+V KAN++ S
Sbjct: 160 GRQGEGENEEAFDTMRYSRKEI-----RRIAKIAFESAQ-GRRKKVTSVDKANVLACSV- 212
Query: 214 LFLRCCRDAAEKFPEVKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGG 273
L+ + A+ +P+V+ E Y+D + +++ P ++DV++ NL+GDI+SD A L G
Sbjct: 213 LWREVVEEVAKDYPDVELEHIYIDNATMQLLRRPNEFDVMLCSNLFGDIVSDEIAMLTGS 272
Query: 274 LGLTPSGNIGLNG-ALFESVHGTAPDIAGKDLANPTALLLSAVMMLRH-LDLNTHADVIQ 331
+GL S ++ G ++E G+APDIAG+ +ANP A +LSA ++LRH L L A I+
Sbjct: 273 MGLLASISMNSQGFGMYEPAGGSAPDIAGQGIANPVAQILSAALLLRHSLKLEDAALAIE 332
Query: 332 KAALDTIKEGKYRTGDL 348
A + G Y TG+L
Sbjct: 333 AAVSKALNSG-YLTGEL 348
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 8/56 (14%)
Query: 47 RGLKVQGLGEFNLYANVRPCR---SLEGYPTLYDDV-----DVVTIRENTEGEYSG 94
RG + G F L+ N+RP + LE L D+ D++ +RE T G Y G
Sbjct: 101 RGALLPLRGHFELFCNMRPAKLHPGLEHMSPLRSDISEKGFDILCVRELTGGIYFG 156
>pdb|3VMK|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Benthica
Db21 Mt-2
pdb|3VMK|B Chain B, 3-Isopropylmalate Dehydrogenase From Shewanella Benthica
Db21 Mt-2
Length = 375
Score = 125 bits (315), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 88/250 (35%), Positives = 134/250 (53%), Gaps = 30/250 (12%)
Query: 115 ERGASV----EFNLYANVRPCR---SLEGYPTLYDDV-----DVVTIRENTEGEY----- 157
ERGA + F L+ N+RP + LE L D+ D++ +RE T G Y
Sbjct: 100 ERGALLPLRGHFELFCNMRPAKLHPGLEHMSPLRSDISEKGFDILCVRELTGGIYFGKPK 159
Query: 158 ----SGIEHEIVDGVVQSIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDG 213
G E D + S K I R+A+ AFE A+ R KVT+V KAN++ S
Sbjct: 160 GRQGEGENEEAFDTMRYSRKEIR-----RIAKIAFESAQ-GRRKKVTSVDKANVLACSV- 212
Query: 214 LFLRCCRDAAEKFPEVKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGG 273
L+ + A+ +P+V+ E Y+D + +++ P ++DV++ NL+GDI+SD A L G
Sbjct: 213 LWREVVEEVAKDYPDVELEHIYIDNATMQLLRRPNEFDVMLCSNLFGDIVSDEIAMLTGS 272
Query: 274 LGLTPSGNIGLNG-ALFESVHGTAPDIAGKDLANPTALLLSAVMMLRH-LDLNTHADVIQ 331
+GL S ++ G ++E G+APDIAG+ +ANP A +LSA ++LRH L L A I+
Sbjct: 273 MGLLASISMNSQGFGMYEPAGGSAPDIAGQGIANPVAQILSAALLLRHSLKLEDAALAIE 332
Query: 332 KAALDTIKEG 341
A + +G
Sbjct: 333 AAVSKALSDG 342
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 8/56 (14%)
Query: 47 RGLKVQGLGEFNLYANVRPCR---SLEGYPTLYDDV-----DVVTIRENTEGEYSG 94
RG + G F L+ N+RP + LE L D+ D++ +RE T G Y G
Sbjct: 101 RGALLPLRGHFELFCNMRPAKLHPGLEHMSPLRSDISEKGFDILCVRELTGGIYFG 156
>pdb|4IWH|A Chain A, Crystal Structure Of A 3-isopropylmalate Dehydrogenase
From Burkholderia Pseudomallei
pdb|4IWH|B Chain B, Crystal Structure Of A 3-isopropylmalate Dehydrogenase
From Burkholderia Pseudomallei
Length = 363
Score = 124 bits (311), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 87/260 (33%), Positives = 136/260 (52%), Gaps = 41/260 (15%)
Query: 117 GASVEFNLYANVRPCRSLEGYPTLYD----------DVDVVTIRE--------------- 151
G L+AN RP YP L D +D++ +RE
Sbjct: 96 GLRKHLELFANFRPAIC---YPQLVDASPLKPELVAGLDILIVRELNGDIYFGQPRGVRA 152
Query: 152 NTEGEYSGIEHEIVDGVVQSIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMS 211
+G ++G E E D + S E R+A AF+ A+ + K+ +V K+N++ S
Sbjct: 153 APDGPFAG-EREGFDTMRYS-----EPEVRRIAHVAFQAAQKRAK-KLLSVDKSNVLETS 205
Query: 212 DGLFLR-CCRDAAEKFPEVKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGL 270
F R D ++++ +V+ Y+D + + + P Q+DV+V N++GDILSD + L
Sbjct: 206 Q--FWRDVMIDVSKEYADVELSHMYVDNAAMQLAKAPKQFDVIVTGNMFGDILSDEASML 263
Query: 271 VGGLGLTPSGNIGLNG-ALFESVHGTAPDIAGKDLANPTALLLSAVMMLRH-LDLNTHAD 328
G +G+ PS ++ N L+E HG+APDIAGK +ANP A +LSA M+LR+ L+ AD
Sbjct: 264 TGSIGMLPSASLDKNNKGLYEPSHGSAPDIAGKGIANPLATILSAAMLLRYSLNRAEQAD 323
Query: 329 VIQKAALDTIKEGKYRTGDL 348
I++ A+ T+ E YRTGD+
Sbjct: 324 RIER-AVKTVLEQGYRTGDI 342
>pdb|3UDU|A Chain A, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|B Chain B, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|C Chain C, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|D Chain D, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|E Chain E, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|F Chain F, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|G Chain G, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|H Chain H, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
Length = 361
Score = 107 bits (268), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 80/241 (33%), Positives = 131/241 (54%), Gaps = 14/241 (5%)
Query: 122 FNLYANVRPCRSLEGY--------PTLYDDVDVVTIRENTEGEYSGIEHEIVDGVVQSIK 173
FNL+AN+RPC+ E + VD++ +RE T G Y G + ++ +
Sbjct: 104 FNLFANLRPCKIYESLTHASPLKNEIIQKGVDILCVRELTGGIYFG-KQDLGKESAYDTE 162
Query: 174 LITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEE 233
+ T++ R+A AFE A+ + KV + KAN++ S L+ + A+ + ++ E
Sbjct: 163 IYTKKEIERIARIAFESARIR-KKKVHLIDKANVL-ASSILWREVVANVAKDYQDINLEY 220
Query: 234 KYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNG-ALFESV 292
Y+D + +V++P+ +DV++ NL+GDILSD A + G LGL S ++ G L+E
Sbjct: 221 MYVDNAAMQIVKNPSIFDVMLCSNLFGDILSDELAAINGSLGLLSSASLNDKGFGLYEPA 280
Query: 293 HGTAPDIAGKDLANPTALLLSAVMMLRH-LDLNTHADVIQKAALDTIKEGKYRTGDLGGK 351
G+APDIA ++ANP A +LSA +ML++ A I+ A + +GK T DL K
Sbjct: 281 GGSAPDIAHLNIANPIAQILSAALMLKYSFKEEQAAQDIENAISLALAQGKM-TKDLNAK 339
Query: 352 A 352
+
Sbjct: 340 S 340
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 57 FNLYANVRPCRSLEGY--------PTLYDDVDVVTIRENTEGEYSGIEHEIVDGVCNSNY 108
FNL+AN+RPC+ E + VD++ +RE T G Y G + + ++
Sbjct: 104 FNLFANLRPCKIYESLTHASPLKNEIIQKGVDILCVRELTGGIYFGKQDLGKESAYDTEI 163
Query: 109 ATKWFSERGASVEF 122
TK ER A + F
Sbjct: 164 YTKKEIERIARIAF 177
>pdb|3UDO|A Chain A, Crystal Structure Of Putative Isopropylamlate
Dehydrogenase From Campylobacter Jejuni
Length = 361
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/241 (32%), Positives = 128/241 (53%), Gaps = 14/241 (5%)
Query: 122 FNLYANVRPCRSLEGY--------PTLYDDVDVVTIRENTEGEYSGIEHEIVDGVVQSIK 173
FNL+AN+RPC+ E + VD++ +RE T G Y G + ++ +
Sbjct: 104 FNLFANLRPCKIYESLTHASPLKNEIIQKGVDILCVRELTGGIYFG-KQDLGKESAYDTE 162
Query: 174 LITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEE 233
+ T++ R+A AFE A+ + KV + KAN++ S L+ + A+ + ++ E
Sbjct: 163 IYTKKEIERIARIAFESARIR-KKKVHLIDKANVL-ASSILWREVVANVAKDYQDINLEY 220
Query: 234 KYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNG-ALFESV 292
Y+D +V++P+ +DV + NL+GDILSD A + G LGL S ++ G L+E
Sbjct: 221 XYVDNAAXQIVKNPSIFDVXLCSNLFGDILSDELAAINGSLGLLSSASLNDKGFGLYEPA 280
Query: 293 HGTAPDIAGKDLANPTALLLSAVMMLRH-LDLNTHADVIQKAALDTIKEGKYRTGDLGGK 351
G+APDIA ++ANP A +LSA + L++ A I+ A + +GK T DL K
Sbjct: 281 GGSAPDIAHLNIANPIAQILSAALXLKYSFKEEQAAQDIENAISLALAQGK-XTKDLNAK 339
Query: 352 A 352
+
Sbjct: 340 S 340
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 57 FNLYANVRPCRSLEGY--------PTLYDDVDVVTIRENTEGEYSGIEHEIVDGVCNSNY 108
FNL+AN+RPC+ E + VD++ +RE T G Y G + + ++
Sbjct: 104 FNLFANLRPCKIYESLTHASPLKNEIIQKGVDILCVRELTGGIYFGKQDLGKESAYDTEI 163
Query: 109 ATKWFSERGASVEF 122
TK ER A + F
Sbjct: 164 YTKKEIERIARIAF 177
>pdb|1ZOR|A Chain A, Isocitrate Dehydrogenase From The Hyperthermophile
Thermotoga Maritima
pdb|1ZOR|B Chain B, Isocitrate Dehydrogenase From The Hyperthermophile
Thermotoga Maritima
Length = 399
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 49/99 (49%), Gaps = 14/99 (14%)
Query: 257 NLYGDILSDMCAGLVGGLGLTPSGNIGLNGAL-FESVHGTAPD-----IAG-KDLANPTA 309
N GDI+SDM A G LGL S + +G FE+ HGT + G K NPTA
Sbjct: 266 NYEGDIMSDMIASGFGSLGLMTSVLVSPDGVYEFEAAHGTVRRHYYRYLKGEKTSTNPTA 325
Query: 310 LLLSAVMMLR---HLD----LNTHADVIQKAALDTIKEG 341
+ + +R LD + AD ++KA ++TI+ G
Sbjct: 326 SIFAWTGAIRKRGELDGTPEVCEFADKLEKAVINTIESG 364
>pdb|1LWD|A Chain A, Crystal Structure Of Nadp-Dependent Isocitrate
Dehydrogenase From Porcine Heart Mitochondria
pdb|1LWD|B Chain B, Crystal Structure Of Nadp-Dependent Isocitrate
Dehydrogenase From Porcine Heart Mitochondria
Length = 413
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 82/197 (41%), Gaps = 25/197 (12%)
Query: 176 TEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKF---- 231
T+E+ S A F+YA + + K I++ DG F ++ EK + F
Sbjct: 185 TDESISGFAHSCFQYA-IQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDKYK 243
Query: 232 ---EEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGAL 288
E + +D + +++ + V N GD+ SD+ A G LGL S + +G
Sbjct: 244 IWYEHRLIDDMVAQVLKSSGGF-VWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKT 302
Query: 289 F--ESVHGTAP-----DIAGKDLA-NPTALLLSAVMMLRHL-------DLNTHADVIQKA 333
E+ HGT G+ + NP A + + L H DL A ++K
Sbjct: 303 IEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKV 362
Query: 334 ALDTIKEGKYRTGDLGG 350
++T++ G T DL G
Sbjct: 363 CVETVESGAM-TKDLAG 378
>pdb|2QFV|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFV|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFV|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFV|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFW|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|E Chain E, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|F Chain F, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFX|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|E Chain E, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|F Chain F, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFY|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|E Chain E, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|F Chain F, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
Length = 427
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 61/129 (47%), Gaps = 11/129 (8%)
Query: 176 TEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAE-----KFPE-- 228
T+E+ A +F+ A + + + K I++ DG F ++ E KF +
Sbjct: 201 TDESIEGFAHSSFKLA-IDKKLNLFLSTKNTILKKYDGRFKDIFQEVYEAQYKSKFEQLG 259
Query: 229 VKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGAL 288
+ +E + +D + M++ + ++ + N GD+ SD+ A G LGL S + +G
Sbjct: 260 IHYEHRLIDDMVAQMIKSKGGF-IMALKNYDGDVQSDIVAQGFGSLGLMTSILVTPDGKT 318
Query: 289 FES--VHGT 295
FES HGT
Sbjct: 319 FESEAAHGT 327
>pdb|2UXQ|A Chain A, Isocitrate Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila: Biochemical Properties And
Crystal Structure Analysis
pdb|2UXQ|B Chain B, Isocitrate Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila: Biochemical Properties And
Crystal Structure Analysis
pdb|2UXQ|C Chain C, Isocitrate Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila: Biochemical Properties And
Crystal Structure Analysis
pdb|2UXQ|D Chain D, Isocitrate Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila: Biochemical Properties And
Crystal Structure Analysis
pdb|2UXR|A Chain A, Complex With Isocitrate And The Protein Isocitrate
Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila
pdb|2UXR|B Chain B, Complex With Isocitrate And The Protein Isocitrate
Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila
pdb|4AOV|A Chain A, Dpidh-Nadp. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
Length = 402
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 63/148 (42%), Gaps = 20/148 (13%)
Query: 219 CRDAAEKFPEVKFEEKY--LDTVCLNMVQDPTQYDVL-VMPNLYGDILSDMCAGLVGGLG 275
++ EKF E Y +D V M++ T+ +L N GD++SDM A G L
Sbjct: 229 AQEYKEKFAAAGIEYFYTLIDDVVARMMK--TEGGMLWACKNYDGDVMSDMVASAFGSLA 286
Query: 276 LTPSGNIGLNGAL-FESVHGTAPDIAGKDL------ANPTALLLSAVMMLRHL------- 321
+ S + G +E+ HGT + L NP AL+ + LR
Sbjct: 287 MMSSVLVSPYGYFEYEAAHGTVQRHYYQHLKGERTSTNPVALIYAWTGALRKRGELDGTP 346
Query: 322 DLNTHADVIQKAALDTIKEGKYRTGDLG 349
DL D ++ ++ I+ G Y TGDL
Sbjct: 347 DLCAFCDSLEAITIECIESG-YMTGDLA 373
>pdb|2QR8|A Chain A, 2.0a X-ray Structure Of C-terminal Kinase Domain Of P90
Ribosomal S6 Kinase 2 (rsk2)
pdb|4D9U|A Chain A, Rsk2 C-Terminal Kinase Domain, (E)-Tert-Butyl
3-(4-Amino-7-(3-
Hydroxypropyl)-5-P-Tolyl-7h-Pyrrolo[2,
3-D]pyrimidin-6-Yl)-2- Cyanoacrylate
pdb|4D9T|A Chain A, Rsk2 C-Terminal Kinase Domain With Inhibitor (E)-Methyl
3-(4-Amino-7-
(3-Hydroxypropyl)-5-P-Tolyl-7h-Pyrrolo[2,
3-D]pyrimidin-6-Yl)-2- Cyanoacrylate
Length = 342
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 48/116 (41%), Gaps = 4/116 (3%)
Query: 205 ANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILS 264
A +R +GL + C A PEV E + D C Y +L + +
Sbjct: 167 AKQLRAENGLLMTPCYTANFVAPEV-LERQGYDAACDIWSLGVLLYTMLTGYTPFANGPD 225
Query: 265 DMCAGLVGGLGLTPSGNIGLNGALFESVHGTAPDIAGKDLANPTALLLSAVMMLRH 320
D ++ +G SG L+G + SV TA D+ K L L+A ++LRH
Sbjct: 226 DTPEEILARIG---SGKFSLSGGYWNSVSDTAKDLVSKMLHVDPHQRLTAALVLRH 278
>pdb|2QR7|A Chain A, 2.0a X-Ray Structure Of C-Terminal Kinase Domain Of P90
Ribosomal S6 Kinase 2: Se-Met Derivative
Length = 342
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 46/116 (39%), Gaps = 4/116 (3%)
Query: 205 ANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILS 264
A +R +GL C A PEV E + D C Y L + +
Sbjct: 167 AKQLRAENGLLXTPCYTANFVAPEV-LERQGYDAACDIWSLGVLLYTXLTGYTPFANGPD 225
Query: 265 DMCAGLVGGLGLTPSGNIGLNGALFESVHGTAPDIAGKDLANPTALLLSAVMMLRH 320
D ++ +G SG L+G + SV TA D+ K L L+A ++LRH
Sbjct: 226 DTPEEILARIG---SGKFSLSGGYWNSVSDTAKDLVSKXLHVDPHQRLTAALVLRH 278
>pdb|3US8|A Chain A, Crystal Structure Of An Isocitrate Dehydrogenase From
Sinorhizobium Meliloti 1021
pdb|3US8|B Chain B, Crystal Structure Of An Isocitrate Dehydrogenase From
Sinorhizobium Meliloti 1021
Length = 427
Score = 34.7 bits (78), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 86/214 (40%), Gaps = 28/214 (13%)
Query: 160 IEHEIVDGVVQSIKLITEEASSRVAEFA---FEYAKTNNRSKVTAVHKANIMRMSDGLFL 216
IEH++ D + L + EFA F Y + V K I++ DG F
Sbjct: 187 IEHDVYDAPGAGVALAXYNLDESITEFARASFNYG-LQRKVPVYLSTKNTILKAYDGRFK 245
Query: 217 RCCRD-------AAEKFPEVKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAG 269
+ A K ++ +E + +D + ++ Y V N GD+ SD+ A
Sbjct: 246 DIFQKVFDEEFAAQFKAEKLWYEHRLIDDXVASALKWSGGY-VWACKNYDGDVQSDIVAQ 304
Query: 270 LVGGLGLTPSGNIGLNGALF--ESVHGTA-----PDIAGKDLA-NPTALLLSAVMMLRH- 320
G LGL S +G E+ HGT G++ + N A + + L H
Sbjct: 305 GFGSLGLXTSVLXTPDGKTVEAEAAHGTVTRHYRQHQKGEETSTNSIASIFAWTRGLAHR 364
Query: 321 --LDLNTH----ADVIQKAALDTIKEGKYRTGDL 348
LD N ++ +++ +DT++ G + T DL
Sbjct: 365 AKLDGNAELAKFSETLERVCVDTVESG-FXTKDL 397
>pdb|4AOY|A Chain A, Open Ctidh. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
pdb|4AOY|B Chain B, Open Ctidh. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
pdb|4AOY|C Chain C, Open Ctidh. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
pdb|4AOY|D Chain D, Open Ctidh. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
pdb|4AOU|A Chain A, Ctidh Bound To Nadp. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
Length = 402
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 54/127 (42%), Gaps = 8/127 (6%)
Query: 176 TEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEK- 234
T+++ A F YA N+ + K I + D F ++ E + KFE K
Sbjct: 183 TDKSIRSFARACFNYALDMNQDLWFST-KDTISKTYDHRFKDIFQEIYENEYKEKFEAKN 241
Query: 235 --YLDTVCLNMVQDPTQYD---VLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGAL- 288
Y T+ + V + + V N GD++SDM A G L + S + +G
Sbjct: 242 LQYFYTLIDDAVARIIRSEGGMVWACKNYDGDVMSDMVASAFGSLAMMTSVLVSPDGKYE 301
Query: 289 FESVHGT 295
FE+ HGT
Sbjct: 302 FEAAHGT 308
>pdb|3EZ8|A Chain A, Crystal Structure Of Endoglucanase Cel9a From The
Thermoacidophilic Alicyclobacillus Acidocaldarius
pdb|3GZK|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela
pdb|3H2W|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela In Complex
With Cellobiose
pdb|3H3K|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela In Complex
With Cellotetraose
pdb|3RX5|A Chain A, Structure Of Aacel9a In Complex With Cellotriose-Like
Isofagomine
pdb|3RX7|A Chain A, Structure Of Aacel9a In Complex With Cellotetraose-Like
Isofagomine
pdb|3RX8|A Chain A, Structure Of Aacel9a In Complex With Cellobiose-Like
Isofagomine
Length = 537
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 12/108 (11%)
Query: 126 ANVRPCRSLEGYPTLYDDVDV--------VTIRENTEGEYSGIEHEIVDGVVQSIKLITE 177
A+VRP RS+ P L ++V +T+++ G G+ H++ + E
Sbjct: 173 AHVRPMRSVHRAPHLPPALEVAREEIAWLLTMQDPATG---GVYHKVTTPSFPPLDTRPE 229
Query: 178 EASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEK 225
+ + + YA T A H A + R D CC DAA +
Sbjct: 230 DDDAPLVLSPISYAATATFCAAMA-HAALVYRPFDPALSSCCADAARR 276
>pdb|4HCX|A Chain A, Structure Of Icdh-1 From M.tuberculosis Complexed With
Nadph & Mn2+
pdb|4HCX|B Chain B, Structure Of Icdh-1 From M.tuberculosis Complexed With
Nadph & Mn2+
Length = 409
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 76/183 (41%), Gaps = 27/183 (14%)
Query: 160 IEHEIV----DGVVQSIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLF 215
I HE+V DG V +E+ A +F Y N + V K I++ DG+F
Sbjct: 168 IVHEMVSIPEDGGVVLGMYNFKESIRDFARASFSYG-LNAKWPVYLSTKNTILKAYDGMF 226
Query: 216 LRCCRDAAEKFPEVKFEEK-------YLDTVCLNMVQDPTQYD---VLVMPNLYGDILSD 265
+D E+ E +F+ + Y + +MV +++ V N GD+ SD
Sbjct: 227 ----KDEFERVYEEEFKAQFEAAGLTYEHRLIDDMVAACLKWEGGYVWACKNYDGDVQSD 282
Query: 266 MCAGLVGGLGLTPSGNIGLNGALF--ESVHGTAPD-----IAGKDLA-NPTALLLSAVMM 317
A G LGL S + +G E+ HGT AGK + NP A + +
Sbjct: 283 TVAQGYGSLGLMTSVLMTADGKTVEAEAAHGTVTRHYRQYQAGKPTSTNPIASIFAWTRG 342
Query: 318 LRH 320
L+H
Sbjct: 343 LQH 345
>pdb|3MAP|A Chain A, Crystal Structure Of Homodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp And Isocitrate
pdb|3MAP|B Chain B, Crystal Structure Of Homodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp And Isocitrate
pdb|3MAR|A Chain A, Crystal Structure Of Homodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp
pdb|3MAR|B Chain B, Crystal Structure Of Homodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp
pdb|3MAS|A Chain A, Crystal Structure Of Heterodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp And Isocitrate
Length = 422
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 74/168 (44%), Gaps = 22/168 (13%)
Query: 204 KANIMRMSDGLFLRCCRDAAEKFPEVKFEEK---YLDTVCLNMVQDPTQYD---VLVMPN 257
K I++ DG F ++ +K + +FE + Y + +MV + + + N
Sbjct: 212 KNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHRLIDDMVAQAMKSEGGFIWACKN 271
Query: 258 LYGDILSDMCAGLVGGLGLTPSGNIGLNGALF--ESVHGTAPD-----IAGKDLA-NPTA 309
GD+ SD A G LG+ S + +G E+ HGT G++ + NP A
Sbjct: 272 YDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTVEAEAAHGTVTRHYRMYQKGQETSTNPIA 331
Query: 310 LLLSAVMMLRH---LDLNTH----ADVIQKAALDTIKEGKYRTGDLGG 350
+ + L H LD N A+ +++ +++TI+ G + T DL
Sbjct: 332 SIFAWTRGLAHRAKLDNNKELAFFANALEEVSIETIEAG-FMTKDLAA 378
>pdb|3INM|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase R132h Mutant In Complex With
Nadph, Alpha-Ketoglutarate And Calcium(2+)
pdb|3INM|B Chain B, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase R132h Mutant In Complex With
Nadph, Alpha-Ketoglutarate And Calcium(2+)
pdb|3INM|C Chain C, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase R132h Mutant In Complex With
Nadph, Alpha-Ketoglutarate And Calcium(2+)
Length = 425
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 74/168 (44%), Gaps = 22/168 (13%)
Query: 204 KANIMRMSDGLFLRCCRDAAEKFPEVKFEEK---YLDTVCLNMVQDPTQYD---VLVMPN 257
K I++ DG F ++ +K + +FE + Y + +MV + + + N
Sbjct: 212 KNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHRLIDDMVAQAMKSEGGFIWACKN 271
Query: 258 LYGDILSDMCAGLVGGLGLTPSGNIGLNGALF--ESVHGTAPD-----IAGKDLA-NPTA 309
GD+ SD A G LG+ S + +G E+ HGT G++ + NP A
Sbjct: 272 YDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTVEAEAAHGTVTRHYRMYQKGQETSTNPIA 331
Query: 310 LLLSAVMMLRH---LDLNTH----ADVIQKAALDTIKEGKYRTGDLGG 350
+ + L H LD N A+ +++ +++TI+ G + T DL
Sbjct: 332 SIFAWTRGLAHRAKLDNNKELAFFANALEEVSIETIEAG-FMTKDLAA 378
>pdb|1T09|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex Nadp
pdb|1T09|B Chain B, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex Nadp
pdb|1T0L|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex With Nadp,
Isocitrate, And Calcium(2+)
pdb|1T0L|B Chain B, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex With Nadp,
Isocitrate, And Calcium(2+)
pdb|1T0L|C Chain C, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex With Nadp,
Isocitrate, And Calcium(2+)
pdb|1T0L|D Chain D, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex With Nadp,
Isocitrate, And Calcium(2+)
Length = 414
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 74/168 (44%), Gaps = 22/168 (13%)
Query: 204 KANIMRMSDGLFLRCCRDAAEKFPEVKFEEK---YLDTVCLNMVQDPTQYD---VLVMPN 257
K I++ DG F ++ +K + +FE + Y + +MV + + + N
Sbjct: 212 KNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHRLIDDMVAQAMKSEGGFIWACKN 271
Query: 258 LYGDILSDMCAGLVGGLGLTPSGNIGLNGALF--ESVHGTAPD-----IAGKDLA-NPTA 309
GD+ SD A G LG+ S + +G E+ HGT G++ + NP A
Sbjct: 272 YDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTVEAEAAHGTVTRHYRMYQKGQETSTNPIA 331
Query: 310 LLLSAVMMLRH---LDLNTH----ADVIQKAALDTIKEGKYRTGDLGG 350
+ + L H LD N A+ +++ +++TI+ G + T DL
Sbjct: 332 SIFAWTRGLAHRAKLDNNKELAFFANALEEVSIETIEAG-FMTKDLAA 378
>pdb|3MAS|B Chain B, Crystal Structure Of Heterodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp And Isocitrate
Length = 419
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 74/166 (44%), Gaps = 22/166 (13%)
Query: 204 KANIMRMSDGLFLRCCRDAAEKFPEVKFEEK---YLDTVCLNMVQDPTQYD---VLVMPN 257
K I++ DG F ++ +K + +FE + Y + +MV + + + N
Sbjct: 217 KNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHRLIDDMVAQAMKSEGGFIWACKN 276
Query: 258 LYGDILSDMCAGLVGGLGLTPSGNIGLNGALF--ESVHGTAPD-----IAGKDLA-NPTA 309
GD+ SD A G LG+ S + +G E+ HGT G++ + NP A
Sbjct: 277 YDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTVEAEAAHGTVTRHYRMYQKGQETSTNPIA 336
Query: 310 LLLSAVMMLRH---LDLNTH----ADVIQKAALDTIKEGKYRTGDL 348
+ + L H LD N A+ +++ +++TI+ G + T DL
Sbjct: 337 SIFAWTRGLAHRAKLDNNKELAFFANALEEVSIETIEAG-FMTKDL 381
>pdb|2CMJ|A Chain A, Crystal Structure Of Mouse Cytosolic Isocitrate
Dehydrogenase
pdb|2CMJ|B Chain B, Crystal Structure Of Mouse Cytosolic Isocitrate
Dehydrogenase
pdb|2CMV|A Chain A, Crystal Structure Of Mouse Cytosolic Isocitrate
Dehydrogenase Complexed With Cadmium And Citrate
pdb|2CMV|B Chain B, Crystal Structure Of Mouse Cytosolic Isocitrate
Dehydrogenase Complexed With Cadmium And Citrate
Length = 410
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 71/168 (42%), Gaps = 22/168 (13%)
Query: 204 KANIMRMSDGLFLRCCRDAAEKFPEVKFEEK---YLDTVCLNMVQDPTQYD---VLVMPN 257
K I++ DG F ++ +K + +FE + Y + +MV + + + N
Sbjct: 209 KNTILKKYDGRFKDIFQEIYDKKYKSQFEAQNICYEHRLIDDMVAQAMKSEGGFIWACKN 268
Query: 258 LYGDILSDMCAGLVGGLGLTPSGNIGLNGALF--ESVHGTAPD-----IAGKDLA-NPTA 309
GD+ SD A G LG+ S I +G E+ HGT G++ + NP A
Sbjct: 269 YDGDVQSDSVAQGYGSLGMMTSVLICPDGKTVEAEAAHGTVTRHYRMYQKGQETSTNPIA 328
Query: 310 LLLSAVMMLRH---LDLNTHADVIQKA----ALDTIKEGKYRTGDLGG 350
+ + L H LD NT KA ++TI+ G + T DL
Sbjct: 329 SIFAWSRGLAHRAKLDNNTELSFFAKALEDVCIETIEAG-FMTKDLAA 375
>pdb|3LID|A Chain A, Crystal Structure Of The Extracellular Domain Of The
Putative Histidine Kinase Vphk1s-Z8
pdb|3LID|B Chain B, Crystal Structure Of The Extracellular Domain Of The
Putative Histidine Kinase Vphk1s-Z8
pdb|3LIE|A Chain A, Crystal Structure Of The Extracellular Domain Of The
Putative Histidine Kinase Vphk1s-Z8
pdb|3LIE|B Chain B, Crystal Structure Of The Extracellular Domain Of The
Putative Histidine Kinase Vphk1s-Z8
Length = 295
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 10/105 (9%)
Query: 2 PNNPTLSLLKLPLQCNTVETISYLTL-------SELISAQYINTPSISQWSWRGLKVQGL 54
P +P+L +L +P+ N V YL L S L++ + I +G +
Sbjct: 147 PLSPSLRIL-MPISVNDVRQ-GYLVLNVDIEYLSSLLNYSPVRDFHIELVKHKGFYIASP 204
Query: 55 GEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEI 99
E LY ++ P RS + +Y D+ + E YSG EH I
Sbjct: 205 DESRLYGDIIPERSQFNFSNMYPDIWPRVVSEQAGYSYSG-EHLI 248
>pdb|4ATY|A Chain A, Crystal Structure Of A Terephthalate 1,2-Cis-
Dihydrodioldehydrogenase From Burkholderia Xenovorans
Lb400
Length = 349
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 286 GALFESV-HGTAPDIAGKDLANPTALL 311
G LF SV HG+ DIAG LA+P LL
Sbjct: 306 GVLFSSVGHGSGFDIAGTLLADPAPLL 332
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,055,219
Number of Sequences: 62578
Number of extensions: 472900
Number of successful extensions: 1366
Number of sequences better than 100.0: 77
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1086
Number of HSP's gapped (non-prelim): 161
length of query: 364
length of database: 14,973,337
effective HSP length: 100
effective length of query: 264
effective length of database: 8,715,537
effective search space: 2300901768
effective search space used: 2300901768
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)