Query psy8787
Match_columns 364
No_of_seqs 188 out of 1569
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 19:15:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8787.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8787hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0473 LeuB Isocitrate/isopro 100.0 3E-114 7E-119 828.8 27.9 320 42-364 2-344 (348)
2 PRK08997 isocitrate dehydrogen 100.0 2E-110 4E-115 813.9 31.9 319 43-364 2-333 (334)
3 KOG0785|consensus 100.0 2E-111 4E-116 790.6 22.7 324 38-364 30-364 (365)
4 PRK14025 multifunctional 3-iso 100.0 3E-110 6E-115 811.1 31.2 317 44-364 2-329 (330)
5 PLN00118 isocitrate dehydrogen 100.0 1E-109 3E-114 815.1 31.5 321 41-364 39-371 (372)
6 PLN00123 isocitrate dehydrogen 100.0 5E-109 1E-113 807.3 32.6 343 9-364 1-358 (360)
7 PRK08194 tartrate dehydrogenas 100.0 3E-107 7E-112 796.6 29.0 318 42-364 2-348 (352)
8 TIGR02089 TTC tartrate dehydro 100.0 4E-107 9E-112 796.4 29.2 318 42-364 2-351 (352)
9 PRK09222 isocitrate dehydrogen 100.0 1E-106 2E-111 814.1 31.6 320 42-364 3-340 (482)
10 TIGR00175 mito_nad_idh isocitr 100.0 2E-106 5E-111 787.3 32.4 318 42-364 2-332 (333)
11 TIGR02924 ICDH_alpha isocitrat 100.0 2E-106 4E-111 809.8 29.8 316 45-364 2-336 (473)
12 PLN02329 3-isopropylmalate deh 100.0 7E-106 1E-110 795.5 29.3 351 7-364 11-400 (409)
13 PRK03437 3-isopropylmalate deh 100.0 1E-105 3E-110 783.3 29.5 314 42-364 3-343 (344)
14 TIGR00169 leuB 3-isopropylmala 100.0 6E-105 1E-109 780.4 30.7 314 45-364 1-348 (349)
15 PRK07362 isocitrate dehydrogen 100.0 2E-103 3E-108 780.1 29.9 337 17-364 11-473 (474)
16 PRK06451 isocitrate dehydrogen 100.0 2E-103 3E-108 782.0 29.3 318 43-364 23-407 (412)
17 PRK00772 3-isopropylmalate deh 100.0 4E-103 9E-108 769.0 30.1 315 44-364 3-354 (358)
18 TIGR02088 LEU3_arch isopropylm 100.0 1E-102 2E-107 757.2 30.6 310 46-362 1-322 (322)
19 PRK07006 isocitrate dehydrogen 100.0 2E-102 5E-107 774.4 31.0 318 45-364 21-408 (409)
20 TIGR00183 prok_nadp_idh isocit 100.0 2E-101 3E-106 771.7 31.0 318 43-364 26-415 (416)
21 PF00180 Iso_dh: Isocitrate/is 100.0 1E-100 3E-105 753.9 19.2 312 45-361 1-348 (348)
22 KOG0784|consensus 100.0 2.7E-96 6E-101 696.7 25.4 317 42-364 41-371 (375)
23 PRK08299 isocitrate dehydrogen 100.0 2.5E-93 5.5E-98 704.5 30.6 311 43-364 7-397 (402)
24 PLN00103 isocitrate dehydrogen 100.0 1.1E-90 2.3E-95 687.3 29.7 310 46-364 12-405 (410)
25 PTZ00435 isocitrate dehydrogen 100.0 1.3E-86 2.8E-91 657.9 28.9 310 48-364 14-405 (413)
26 TIGR00127 nadp_idh_euk isocitr 100.0 2.9E-86 6.4E-91 654.7 28.1 312 46-364 9-402 (409)
27 PLN03065 isocitrate dehydrogen 100.0 2.5E-83 5.5E-88 641.3 32.3 309 46-364 80-472 (483)
28 KOG0786|consensus 100.0 3.1E-81 6.8E-86 573.9 20.4 318 41-363 2-356 (363)
29 COG0538 Icd Isocitrate dehydro 100.0 8.3E-80 1.8E-84 592.8 28.8 333 19-364 3-405 (407)
30 PLN00096 isocitrate dehydrogen 100.0 1.2E-67 2.6E-72 516.4 29.1 304 49-364 4-392 (393)
31 KOG1526|consensus 100.0 2.6E-33 5.6E-38 263.3 18.6 308 49-363 24-411 (422)
32 COG0473 LeuB Isocitrate/isopro 97.3 1.8E-05 4E-10 77.5 -2.9 81 18-98 51-139 (348)
33 KOG0784|consensus 97.2 6.1E-05 1.3E-09 73.4 -0.7 68 57-124 128-196 (375)
34 KOG0785|consensus 96.8 0.00043 9.3E-09 66.8 1.0 82 21-106 83-171 (365)
35 PF03971 IDH: Monomeric isocit 96.7 0.027 5.9E-07 58.9 13.3 246 89-349 375-648 (735)
36 TIGR00178 monomer_idh isocitra 96.5 0.089 1.9E-06 55.2 15.1 243 92-349 382-652 (741)
37 PRK03371 pdxA 4-hydroxythreoni 95.8 0.013 2.8E-07 57.8 5.1 133 174-318 177-323 (326)
38 PRK14025 multifunctional 3-iso 95.7 0.00044 9.6E-09 68.3 -5.7 68 26-98 54-125 (330)
39 PLN00123 isocitrate dehydrogen 95.7 0.00066 1.4E-08 67.7 -4.6 69 25-97 77-152 (360)
40 PRK08997 isocitrate dehydrogen 95.7 0.00071 1.5E-08 66.9 -4.4 68 25-96 54-128 (334)
41 PRK02746 pdxA 4-hydroxythreoni 95.6 0.016 3.5E-07 57.6 4.9 138 174-319 180-338 (345)
42 PRK00232 pdxA 4-hydroxythreoni 95.5 0.019 4.1E-07 56.9 4.9 135 174-319 178-325 (332)
43 PRK03946 pdxA 4-hydroxythreoni 95.4 0.021 4.6E-07 55.9 4.9 132 174-319 158-302 (307)
44 PRK05312 pdxA 4-hydroxythreoni 95.4 0.021 4.5E-07 56.6 4.9 135 174-320 182-331 (336)
45 PRK00772 3-isopropylmalate deh 95.4 0.001 2.2E-08 66.5 -4.3 72 26-97 59-146 (358)
46 PF04166 PdxA: Pyridoxal phosp 95.4 0.012 2.5E-07 57.6 3.0 132 174-316 151-296 (298)
47 PRK03743 pdxA 4-hydroxythreoni 95.4 0.021 4.6E-07 56.5 4.9 135 174-320 178-326 (332)
48 PLN00118 isocitrate dehydrogen 95.4 0.0014 3E-08 65.7 -3.5 67 27-97 95-168 (372)
49 PRK03437 3-isopropylmalate deh 95.2 0.001 2.3E-08 66.0 -4.8 78 19-96 53-139 (344)
50 PRK01909 pdxA 4-hydroxythreoni 95.2 0.026 5.5E-07 55.9 4.9 135 174-320 173-322 (329)
51 TIGR00557 pdxA 4-hydroxythreon 95.2 0.027 5.9E-07 55.5 4.9 133 174-318 170-317 (320)
52 PRK08194 tartrate dehydrogenas 94.9 0.0015 3.3E-08 65.1 -4.8 68 26-96 61-141 (352)
53 COG2838 Icd Monomeric isocitra 94.7 0.3 6.5E-06 50.4 10.9 164 174-343 462-648 (744)
54 TIGR02924 ICDH_alpha isocitrat 94.4 0.003 6.5E-08 65.0 -4.1 65 29-97 57-129 (473)
55 COG1995 PdxA Pyridoxal phospha 94.4 0.025 5.5E-07 55.5 2.4 62 250-317 259-322 (332)
56 TIGR02088 LEU3_arch isopropylm 94.3 0.0022 4.7E-08 63.3 -5.2 74 19-96 44-125 (322)
57 TIGR00169 leuB 3-isopropylmala 94.2 0.0024 5.2E-08 63.6 -5.1 73 25-97 55-143 (349)
58 PRK09222 isocitrate dehydrogen 93.4 0.0037 7.9E-08 64.6 -5.7 66 28-97 60-133 (482)
59 PRK06451 isocitrate dehydrogen 93.0 0.0098 2.1E-07 60.5 -3.2 78 19-96 76-159 (412)
60 PRK07362 isocitrate dehydrogen 93.0 0.023 5.1E-07 58.2 -0.6 65 29-97 93-167 (474)
61 TIGR00175 mito_nad_idh isocitr 92.7 0.016 3.4E-07 57.6 -2.2 73 21-96 49-128 (333)
62 PLN02329 3-isopropylmalate deh 92.4 0.024 5.2E-07 57.5 -1.4 71 26-96 103-189 (409)
63 TIGR02089 TTC tartrate dehydro 91.9 0.021 4.5E-07 57.1 -2.6 69 25-96 60-143 (352)
64 TIGR00183 prok_nadp_idh isocit 91.5 0.025 5.4E-07 57.7 -2.5 65 28-96 90-164 (416)
65 PRK07006 isocitrate dehydrogen 91.3 0.024 5.2E-07 57.7 -2.8 63 30-96 85-157 (409)
66 PF00180 Iso_dh: Isocitrate/is 78.9 0.06 1.3E-06 53.8 -7.3 76 19-99 49-141 (348)
67 PRK12862 malic enzyme; Reviewe 73.0 17 0.00036 40.3 9.0 99 174-272 608-720 (763)
68 KOG1671|consensus 72.6 2.1 4.5E-05 39.3 1.6 34 274-307 156-189 (210)
69 TIGR00651 pta phosphate acetyl 64.4 44 0.00095 32.8 9.1 98 176-273 157-269 (303)
70 PF03602 Cons_hypoth95: Conser 63.6 25 0.00055 31.7 6.8 68 187-259 57-124 (183)
71 PTZ00435 isocitrate dehydrogen 58.7 19 0.00041 36.9 5.5 25 143-167 127-151 (413)
72 PRK07232 bifunctional malic en 57.9 55 0.0012 36.3 9.3 99 176-274 602-714 (752)
73 PRK05805 phosphate butyryltran 56.3 83 0.0018 30.8 9.4 124 176-306 149-289 (301)
74 PLN00103 isocitrate dehydrogen 56.0 2.9 6.3E-05 42.7 -0.8 74 19-92 55-167 (410)
75 PRK07742 phosphate butyryltran 54.7 1E+02 0.0023 30.0 9.8 129 176-310 148-292 (299)
76 KOG0786|consensus 53.8 6.8 0.00015 37.5 1.3 64 31-97 66-146 (363)
77 PF12847 Methyltransf_18: Meth 53.1 39 0.00084 26.7 5.6 61 186-257 15-78 (112)
78 cd06308 PBP1_sensor_kinase_lik 49.3 1.1E+02 0.0024 28.0 8.8 77 178-257 106-190 (270)
79 TIGR00127 nadp_idh_euk isocitr 48.8 2.5 5.5E-05 43.1 -2.5 80 18-97 51-160 (409)
80 cd00293 USP_Like Usp: Universa 48.7 1.3E+02 0.0028 23.5 8.3 79 177-257 9-101 (130)
81 PRK08299 isocitrate dehydrogen 46.2 4.5 9.9E-05 41.2 -1.2 73 19-96 53-143 (402)
82 PRK09653 eutD phosphotransacet 45.4 90 0.002 30.8 7.8 125 176-306 173-312 (324)
83 PRK12861 malic enzyme; Reviewe 42.2 1.8E+02 0.0038 32.5 10.0 98 176-273 611-722 (764)
84 TIGR02356 adenyl_thiF thiazole 41.9 2E+02 0.0044 26.0 9.1 63 189-256 39-118 (202)
85 TIGR02709 branched_ptb branche 40.5 3.5E+02 0.0076 26.2 11.9 130 176-319 125-270 (271)
86 PRK15490 Vi polysaccharide bio 40.3 1E+02 0.0022 33.1 7.7 104 168-274 164-305 (578)
87 cd06322 PBP1_ABC_sugar_binding 40.3 2.2E+02 0.0048 25.8 9.3 76 179-258 106-188 (267)
88 cd06323 PBP1_ribose_binding Pe 39.3 1.7E+02 0.0037 26.4 8.3 79 177-258 104-190 (268)
89 KOG0907|consensus 39.0 79 0.0017 26.0 5.3 57 197-258 21-78 (106)
90 PRK11041 DNA-binding transcrip 39.0 1.1E+02 0.0023 28.8 7.1 70 186-257 142-221 (309)
91 TIGR02706 P_butyryltrans phosp 38.0 2.7E+02 0.006 27.0 9.8 125 176-306 145-285 (294)
92 cd06320 PBP1_allose_binding Pe 37.8 2.1E+02 0.0045 26.1 8.7 61 195-257 121-190 (275)
93 COG0723 QcrA Rieske Fe-S prote 37.4 25 0.00054 31.4 2.3 41 263-307 104-145 (177)
94 cd03470 Rieske_cytochrome_bc1 35.8 22 0.00048 30.2 1.6 24 284-307 82-105 (126)
95 PRK12475 thiamine/molybdopteri 32.9 2.8E+02 0.006 27.6 9.1 75 187-267 40-137 (338)
96 PF01515 PTA_PTB: Phosphate ac 32.1 1.3E+02 0.0027 29.8 6.5 97 177-273 174-285 (319)
97 cd01545 PBP1_SalR Ligand-bindi 32.1 2.3E+02 0.0051 25.5 8.0 74 183-257 105-187 (270)
98 cd06313 PBP1_ABC_sugar_binding 31.1 3.5E+02 0.0076 24.8 9.1 77 177-257 106-191 (272)
99 cd06270 PBP1_GalS_like Ligand 30.3 2.5E+02 0.0054 25.5 7.9 18 240-257 168-185 (268)
100 KOG3812|consensus 29.8 2.4E+02 0.0051 28.5 7.7 126 108-257 178-338 (475)
101 cd06309 PBP1_YtfQ_like Peripla 29.6 2.3E+02 0.005 25.9 7.5 76 183-259 109-195 (273)
102 cd06305 PBP1_methylthioribose_ 29.2 2.9E+02 0.0063 25.0 8.2 77 177-257 103-191 (273)
103 cd06294 PBP1_ycjW_transcriptio 29.2 3E+02 0.0066 24.8 8.3 74 183-257 109-191 (270)
104 COG1222 RPT1 ATP-dependent 26S 28.5 98 0.0021 31.5 4.9 69 180-263 229-303 (406)
105 cd06300 PBP1_ABC_sugar_binding 28.1 3.9E+02 0.0085 24.2 8.8 74 185-259 112-195 (272)
106 PF00532 Peripla_BP_1: Peripla 28.1 1.8E+02 0.0039 27.6 6.7 71 185-257 107-188 (279)
107 KOG1014|consensus 27.9 1E+02 0.0022 30.5 4.9 45 185-238 64-108 (312)
108 KOG3040|consensus 27.0 2.3E+02 0.005 26.8 6.7 87 180-267 123-217 (262)
109 cd06287 PBP1_LacI_like_8 Ligan 26.5 3.7E+02 0.0079 24.9 8.4 73 183-257 105-186 (269)
110 PLN03065 isocitrate dehydrogen 26.2 39 0.00084 35.4 1.7 37 143-181 195-232 (483)
111 TIGR01416 Rieske_proteo ubiqui 25.9 39 0.00084 30.4 1.5 22 286-307 132-153 (174)
112 cd06303 PBP1_LuxPQ_Quorum_Sens 25.9 5E+02 0.011 23.9 9.2 77 177-257 114-198 (280)
113 cd01574 PBP1_LacI Ligand-bindi 25.4 3.8E+02 0.0083 24.1 8.2 16 241-257 167-182 (264)
114 PF03971 IDH: Monomeric isocit 25.3 1.1E+02 0.0025 32.9 4.9 46 166-213 214-260 (735)
115 cd01537 PBP1_Repressors_Sugar_ 25.2 3.4E+02 0.0074 23.9 7.7 75 183-258 105-187 (264)
116 cd06273 PBP1_GntR_like_1 This 24.5 3.3E+02 0.0071 24.6 7.5 20 238-257 167-186 (268)
117 cd06311 PBP1_ABC_sugar_binding 24.4 4.6E+02 0.01 23.8 8.6 59 195-257 126-193 (274)
118 cd06288 PBP1_sucrose_transcrip 24.2 3E+02 0.0066 24.8 7.3 75 182-258 102-186 (269)
119 PF07820 TraC: TraC-like prote 24.1 92 0.002 25.3 3.1 38 177-227 23-60 (92)
120 COG0280 Pta Phosphotransacetyl 23.9 3.6E+02 0.0078 26.9 8.0 129 176-309 174-317 (327)
121 COG1995 PdxA Pyridoxal phospha 23.5 58 0.0013 32.4 2.3 21 42-63 2-24 (332)
122 PRK03743 pdxA 4-hydroxythreoni 23.4 44 0.00096 33.3 1.5 21 42-63 2-24 (332)
123 TIGR00178 monomer_idh isocitra 23.2 1E+02 0.0022 33.3 4.1 59 166-226 218-286 (741)
124 PF10672 Methyltrans_SAM: S-ad 23.1 1.9E+02 0.004 28.2 5.7 62 187-255 136-201 (286)
125 cd06272 PBP1_hexuronate_repres 22.9 3E+02 0.0064 24.9 6.9 20 239-258 162-181 (261)
126 cd02975 PfPDO_like_N Pyrococcu 22.9 3E+02 0.0065 22.3 6.2 56 180-238 7-63 (113)
127 cd06310 PBP1_ABC_sugar_binding 22.9 5.7E+02 0.012 23.1 9.2 76 178-257 107-191 (273)
128 PRK11890 phosphate acetyltrans 22.6 4.9E+02 0.011 25.7 8.6 98 176-273 154-267 (312)
129 KOG0189|consensus 21.7 1.9E+02 0.0041 27.2 5.1 58 189-250 63-122 (261)
130 cd07981 TAF12 TATA Binding Pro 21.5 95 0.002 23.6 2.7 25 175-199 31-55 (72)
131 PRK10742 putative methyltransf 21.1 3.2E+02 0.007 26.2 6.7 69 185-260 101-175 (250)
132 cd06280 PBP1_LacI_like_4 Ligan 21.1 2.8E+02 0.0061 25.1 6.4 75 182-258 101-181 (263)
133 PRK02746 pdxA 4-hydroxythreoni 20.8 58 0.0013 32.7 1.7 22 41-63 7-30 (345)
134 PF00582 Usp: Universal stress 20.8 1.2E+02 0.0026 23.8 3.4 26 177-203 12-37 (140)
135 cd06284 PBP1_LacI_like_6 Ligan 20.7 5.5E+02 0.012 22.9 8.2 71 185-257 104-184 (267)
136 PRK08190 bifunctional enoyl-Co 20.5 5.2E+02 0.011 26.8 8.8 125 176-306 308-448 (466)
No 1
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.3e-114 Score=828.77 Aligned_cols=320 Identities=40% Similarity=0.650 Sum_probs=304.9
Q ss_pred CCCCccccCCCCcCHHHHHHHHHHHHhhcC---CCceeEEEEeeeeeecCCCCccccchhHHHHhhhcCEEEEcccc---
Q psy8787 42 SQWSWRGLKVQGLGEFNLYANVRPCRSLEG---YPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVCNSNYATKWFSE--- 115 (364)
Q Consensus 42 ~~~~i~~i~GDGIGp~EV~a~~r~Vl~a~g---~~i~~~~vdig~~re~~~G~Y~~lp~etl~~ik~~daiLkGav~--- 115 (364)
+.|+|++|||||||| ||++++++||+++. ++++|+++++|..+++++|. ++|+++++.++++|++|||+++
T Consensus 2 ~~~~IavipGDGIGp-Ev~~~a~kVl~a~~~~~~~~e~~~~~~G~~~~~~~G~--~lpeetl~~~~~~DaiL~Gavg~P~ 78 (348)
T COG0473 2 KTYTIAVIPGDGIGP-EVMAAALKVLEAAAEFGLDFEFEEAEVGGEAYDKHGE--PLPEETLESLKKADAILFGAVGGPK 78 (348)
T ss_pred CceEEEEeCCCCCCH-HHHHHHHHHHHHhhhcCCceEEEEehhhHHHHHHcCC--CCCHHHHHHHHhCCEEEEcccCCCC
Confidence 578899999999999 99999999999987 79999999999999999997 9999999999999999999995
Q ss_pred --------cc----hhhhcccceeeeeeeccCCCCCCC-CCccEEEEccCCCccccCceee-eeCC-EEEEEEEecHHHH
Q psy8787 116 --------RG----ASVEFNLYANVRPCRSLEGYPTLY-DDVDVVTIRENTEGEYSGIEHE-IVDG-VVQSIKLITEEAS 180 (364)
Q Consensus 116 --------~g----LR~~ldlyanvRP~~~~pg~~~~~-~~iD~vIvREnteg~Y~g~~~~-~~~~-~a~~~~~~t~~~~ 180 (364)
++ |||.||||+|+||+|++||+++++ +++|+|||||||||+|+|.++. ..++ ++.++++|||+++
T Consensus 79 ~~~~~~~~~~~ll~lRk~l~lyANlRP~k~~~~~k~~~~~~~D~viVREnTeG~Y~G~~~~~~~~~eva~~~~~~Tr~~~ 158 (348)
T COG0473 79 WDPLPRPERGLLLALRKELDLYANLRPAKSLPGLKSPLVKGVDIVIVRENTEGLYFGEEGRILGGGEVAIDTKVITRKGS 158 (348)
T ss_pred CCCCCCcccchHHHHHHhcCceeeeeecccCCCCCCccCCCccEEEEeeCCCccccCCCccccCCCeEEEEEEeccHHHH
Confidence 11 999999999999999999999887 6899999999999999999884 3444 8999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhhcCCCeeEeeEeHHHHHHHHhcCCCCccEEEeCCCcc
Q psy8787 181 SRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYG 260 (364)
Q Consensus 181 eriar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp~i~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~G 260 (364)
|||+|+|||+|++|++||||+|||+|||+.|++||+++|+|++++||+|+++|+|||+++||||++|++||||||+||||
T Consensus 159 eRI~r~AFe~A~~R~~kkvTsv~KaNVl~~s~~lwrev~~eva~~yPdv~~~~~~VD~aam~lV~~P~~FDViVt~NlFG 238 (348)
T COG0473 159 ERIARFAFELARKRGRKKVTSVHKANVLKLSDGLWREVVEEVAKEYPDVELDHMYVDAAAMQLVRNPEQFDVIVTSNLFG 238 (348)
T ss_pred HHHHHHHHHHHHhhCCCceEEEehhhhhhhhhHHHHHHHHHHhhcCCCcchhHHhHHHHHHHHhhCccccCEEEEccchh
Confidence 99999999999999889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhccCCCCcccccccCCC--ceeEeeccCCCCCccCCCCCChhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Q psy8787 261 DILSDMCAGLVGGLGLTPSGNIGLN--GALFESVHGTAPDIAGKDLANPTALLLSAVMMLRHLDLNTHADVIQKAALDTI 338 (364)
Q Consensus 261 DIlSD~aa~l~G~lGl~psa~ig~~--~~~fEp~HGsapdiaGk~~aNP~a~ils~ammL~~lg~~~~a~~i~~Av~~~~ 338 (364)
|||||+||+|+|||||+||||+|++ .+||||+|||||||||||||||+|+|||++|||||+|..++|++|++||++++
T Consensus 239 DILSD~aa~l~GslGl~PSAnig~~~~~~lfEPvHGSAPDIAGkgiANPiA~IlS~aMML~~~g~~~~A~~Ie~Av~~vl 318 (348)
T COG0473 239 DILSDEAAALTGSLGLAPSANLGDERGPALFEPVHGSAPDIAGKGIANPIATILSAAMMLRHLGEKEAADAIENAVEKVL 318 (348)
T ss_pred HHHHhHHHHhcCccccCccCccCCCCCCceeecCCCCcccccCCCccChHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 9999999999999999999999997 79999999999999999999999999999999999999999999999999999
Q ss_pred HcCccccCCCCCCCCHHHHHHHHHhC
Q psy8787 339 KEGKYRTGDLGGKAKCSEFTNEICSK 364 (364)
Q Consensus 339 ~~g~~~T~Dlgg~~~T~e~~~av~~~ 364 (364)
+++..+|+||||+++|.||+|+|+++
T Consensus 319 ~~~g~~T~Dlgg~~~T~e~~d~I~~~ 344 (348)
T COG0473 319 AEGGIRTPDLGGNATTSEVGDAIAKA 344 (348)
T ss_pred HcCCCCCcccCCCccHHHHHHHHHHH
Confidence 96435899999999999999999873
No 2
>PRK08997 isocitrate dehydrogenase; Provisional
Probab=100.00 E-value=1.7e-110 Score=813.86 Aligned_cols=319 Identities=40% Similarity=0.694 Sum_probs=305.7
Q ss_pred CCCccccCCCCcCHHHHHHHHHHHHhhcCCCceeEEEEeeeeeecCCCCccccchhHHHHhhhcCEEEEcccc----cc-
Q psy8787 43 QWSWRGLKVQGLGEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVCNSNYATKWFSE----RG- 117 (364)
Q Consensus 43 ~~~i~~i~GDGIGp~EV~a~~r~Vl~a~g~~i~~~~vdig~~re~~~G~Y~~lp~etl~~ik~~daiLkGav~----~g- 117 (364)
.++|.+|||||||| ||++++++|+++++.+++|.++++|...++++|. .+|+++++.++++|++||||++ .+
T Consensus 2 ~~~I~vipGDGIGp-EV~~~a~~vl~~~~~~~~~~~~~~G~~~~~~~G~--~lp~~~l~~~~~~da~L~Gavg~p~~~~~ 78 (334)
T PRK08997 2 KQTITVIPGDGIGP-SIIDATLKILDKLGCDFEYEFADAGLTALEKHGE--LLPQRTLDLIEKNKIALKGPLTTPVGEGF 78 (334)
T ss_pred CcEEEEECCCcccH-HHHHHHHHHHHhcCCCeEEEEEcCCHHHHHhhCC--CCCHHHHHHHHHCCEEEECcccCCCCcCc
Confidence 36899999999999 9999999999998899999999999988889996 8999999999999999999994 11
Q ss_pred ------hhhhcccceeeeeeeccCCCCCCCCCccEEEEccCCCccccCceeeeeCC--EEEEEEEecHHHHHHHHHHHHH
Q psy8787 118 ------ASVEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDG--VVQSIKLITEEASSRVAEFAFE 189 (364)
Q Consensus 118 ------LR~~ldlyanvRP~~~~pg~~~~~~~iD~vIvREnteg~Y~g~~~~~~~~--~a~~~~~~t~~~~eriar~Af~ 189 (364)
|||.||||+|+||||++||+++|++++|+|||||||||+|+|.+++..++ ++++++++||++++||+|+||+
T Consensus 79 ~~~~~~LR~~ldlyanvRP~k~~~g~~~~~~~iD~vivREnteG~Y~g~~~~~~~~~~~a~~~~~~Tr~~~eRi~r~Af~ 158 (334)
T PRK08997 79 TSINVTLRKKFDLYANVRPVLSFPGTKARYDNIDIITVRENTEGMYSGEGQTVSEDGETAEATSIITRKGAERIVRFAYE 158 (334)
T ss_pred cchHHHHHHHcCCeEEEeecccCCCCCCccCCcCEEEEEeccCceecCccceecCCCceEEEEEEeeHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998754332 8899999999999999999999
Q ss_pred HHHhCCCCceEEEEeCcccccccHHHHHHHHHHhhcCCCeeEeeEeHHHHHHHHhcCCCCccEEEeCCCcchhhhhhhhh
Q psy8787 190 YAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAG 269 (364)
Q Consensus 190 ~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp~i~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~GDIlSD~aa~ 269 (364)
+|++|++++||++||+|||+.||+||+++|+|++++||+|+++|++||++||||+++|++||||||+|||||||||++|+
T Consensus 159 ~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~yP~V~~~~~~vDa~~~~lv~~P~~fdVivt~NlfGDILSDlaa~ 238 (334)
T PRK08997 159 LARKEGRKKVTAVHKANIMKSTSGLFLKVAREVALRYPDIEFEEMIVDATCMQLVMNPEQFDVIVTTNLFGDILSDLCAG 238 (334)
T ss_pred HHHhcCCCeEEEEeCCCcchhhhHHHHHHHHHHHhhCCCeEEEeeeHHHHHHHHhhCcccCcEEEEcCcccchhhHHHHH
Confidence 99999888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcccccccCCCceeEeeccCCCCCccCCCCCChhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHcCccccCCCC
Q psy8787 270 LVGGLGLTPSGNIGLNGALFESVHGTAPDIAGKDLANPTALLLSAVMMLRHLDLNTHADVIQKAALDTIKEGKYRTGDLG 349 (364)
Q Consensus 270 l~G~lGl~psa~ig~~~~~fEp~HGsapdiaGk~~aNP~a~ils~ammL~~lg~~~~a~~i~~Av~~~~~~g~~~T~Dlg 349 (364)
++||+||+||+|+|++.+||||+|||||||||||+|||+|+|||++|||||||++++|++|++||.+++++|+.+|+|||
T Consensus 239 l~GglGl~psanig~~~a~FEp~HGSAPdIAGk~iANP~a~IlS~amML~~lG~~~~A~~i~~AV~~vl~~G~~~T~DlG 318 (334)
T PRK08997 239 LVGGLGMAPGANIGRDAAIFEAVHGSAPDIAGKNLANPTSVILAAIQMLEYLGMPDKAERIRKAIVAVIEAGDRTTRDLG 318 (334)
T ss_pred hcCCCCcCcceeECCCceEEECCCCchhhhCCCCccCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHcCCccCcccC
Confidence 99999999999999989999999999999999999999999999999999999999999999999999999976799999
Q ss_pred CCCCHHHHHHHHHhC
Q psy8787 350 GKAKCSEFTNEICSK 364 (364)
Q Consensus 350 g~~~T~e~~~av~~~ 364 (364)
|++||+||+|+|+++
T Consensus 319 G~a~T~e~~~av~~~ 333 (334)
T PRK08997 319 GTHGTTDFTQAVIDR 333 (334)
T ss_pred CCcCHHHHHHHHHhh
Confidence 999999999999874
No 3
>KOG0785|consensus
Probab=100.00 E-value=2.1e-111 Score=790.60 Aligned_cols=324 Identities=59% Similarity=0.958 Sum_probs=311.3
Q ss_pred CCCCCCCCccccCCCCcCHHHHHHHHHHHHhhcCCCceeEEEEeeeeeecCCCCccccchhHHHHhhhcCEEEEccc---
Q psy8787 38 TPSISQWSWRGLKVQGLGEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVCNSNYATKWFS--- 114 (364)
Q Consensus 38 ~p~~~~~~i~~i~GDGIGp~EV~a~~r~Vl~a~g~~i~~~~vdig~~re~~~G~Y~~lp~etl~~ik~~daiLkGav--- 114 (364)
+++.+.+++++|||||||| ||+++++++++++.+|++|+.+|+.......++ +.+|+++++++++++++||||+
T Consensus 30 ~~~~~~~~vtLIpGDGIGp-Ei~~av~kvf~aak~pIewd~~dv~~~~~~~~~--~~ip~~~~esl~~nkvgLkGp~~tP 106 (365)
T KOG0785|consen 30 NSATKTITVTLIPGDGIGP-EISPAVKKVFEAAKVPIEWDFIDVTPIKGPFGG--KAIPDEAVESLRKNKVGLKGPVATP 106 (365)
T ss_pred cCCCCceEEEEecCCCCCH-HHHHHHHHHHHhcCCCcceeeeeccccccCCCC--ccCCHHHHHHHHhhcccccCcccCc
Confidence 3445667899999999999 999999999999999999999999887664444 3799999999999999999998
Q ss_pred -ccc-------hhhhcccceeeeeeeccCCCCCCCCCccEEEEccCCCccccCceeeeeCCEEEEEEEecHHHHHHHHHH
Q psy8787 115 -ERG-------ASVEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLITEEASSRVAEF 186 (364)
Q Consensus 115 -~~g-------LR~~ldlyanvRP~~~~pg~~~~~~~iD~vIvREnteg~Y~g~~~~~~~~~a~~~~~~t~~~~eriar~ 186 (364)
+++ |||+|+||||||||++++|.+++|+++|+|+|||||||+|+|+||++.+||++++|++|+.+++||++|
T Consensus 107 i~kgh~S~nl~LRK~f~LyANVRPc~SieG~Kt~Y~~vD~V~IRENTEgeYsgiEh~vvpGVvqsiK~IT~~AS~Ria~~ 186 (365)
T KOG0785|consen 107 IGKGHRSLNLALRKEFGLYANVRPCKSIEGYKTPYDDVDLVIIRENTEGEYSGIEHQVVPGVVQSIKLITEAASRRIAEY 186 (365)
T ss_pred cccccccHHHHHHHHhchhccceecccccCCcCCCCCceEEEEecCCccccccceeeccccHHHHHHHHHHHHHHHHHHH
Confidence 332 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhhcCCCeeEeeEeHHHHHHHHhcCCCCccEEEeCCCcchhhhhh
Q psy8787 187 AFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDM 266 (364)
Q Consensus 187 Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp~i~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~GDIlSD~ 266 (364)
||+||++++|++||++||+|||+.+||||+++|+|++++||+|.++++|+|++|++|+++|..|||+|+||||||||||+
T Consensus 187 AF~yAr~~~R~~vtvvHKaNImr~tDGLFle~cre~a~~y~dI~~eE~~lDt~~l~lv~~P~~~DVlV~PNLYGDIlSD~ 266 (365)
T KOG0785|consen 187 AFEYARQNGRKRVTVVHKANIMRMTDGLFLECCREVAKKYPDIKFEEQYLDTCCLKLVRNPSCFDVLVMPNLYGDILSDL 266 (365)
T ss_pred HHHHHHHcCCCceEEEehhhhhhhcchHHHHHHHHHhhhCCccchhHHHHHHHHHHHhcCchhceEEeccchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCcccccccCCCceeEeeccCCCCCccCCCCCChhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHcCccccC
Q psy8787 267 CAGLVGGLGLTPSGNIGLNGALFESVHGTAPDIAGKDLANPTALLLSAVMMLRHLDLNTHADVIQKAALDTIKEGKYRTG 346 (364)
Q Consensus 267 aa~l~G~lGl~psa~ig~~~~~fEp~HGsapdiaGk~~aNP~a~ils~ammL~~lg~~~~a~~i~~Av~~~~~~g~~~T~ 346 (364)
||+|+||||++||+|+|++.++||++|||||||||||+|||+|++||++|||||+|++++|++|++||.+++++|+++|+
T Consensus 267 ~agLvGgLGltPS~NiG~g~~~~e~vHGsAPDIAGkdlANPtAlllS~vmMLrhm~l~~~A~~I~~Av~~ti~eg~~rT~ 346 (365)
T KOG0785|consen 267 CAGLVGGLGLTPSANIGDGIVIFEAVHGSAPDIAGKDLANPTALLLSAVMMLRHMGLNDQADQIESAVFKTIAEGKIRTP 346 (365)
T ss_pred HHHhccCcccCCCcccCCCeeeeecccCCCcccccCCcCCcHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHhccCccCc
Confidence 99999999999999999777999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHhC
Q psy8787 347 DLGGKAKCSEFTNEICSK 364 (364)
Q Consensus 347 Dlgg~~~T~e~~~av~~~ 364 (364)
||||+++|+||+++||++
T Consensus 347 DLGGka~~seft~aVc~~ 364 (365)
T KOG0785|consen 347 DLGGKATTSEFTDAVCDR 364 (365)
T ss_pred ccCCCccchHHHHHHHhc
Confidence 999999999999999975
No 4
>PRK14025 multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional
Probab=100.00 E-value=2.9e-110 Score=811.07 Aligned_cols=317 Identities=40% Similarity=0.640 Sum_probs=306.4
Q ss_pred CCccccCCCCcCHHHHHHHHHHHHhhcCCCceeEEEEeeeeeecCCCCccccchhHHHHhhhcCEEEEccccc---c---
Q psy8787 44 WSWRGLKVQGLGEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVCNSNYATKWFSER---G--- 117 (364)
Q Consensus 44 ~~i~~i~GDGIGp~EV~a~~r~Vl~a~g~~i~~~~vdig~~re~~~G~Y~~lp~etl~~ik~~daiLkGav~~---g--- 117 (364)
++|++|||||||| ||++++++|+++++++++|+++++|...+.++|. .+|++++++++++|++||||++. .
T Consensus 2 ~~I~vipGDGIGp-Ev~~~~~~vl~~~~~~~~~~~~~~G~~~~~~~G~--~lp~~~l~~~~~~da~l~G~vg~p~~~~~~ 78 (330)
T PRK14025 2 HKICVIEGDGIGK-EVVPAALHVLEATGLPFEFVYAEAGDEVFEKTGK--ALPEETIEAAKEADAVLFGAAGETAADVIV 78 (330)
T ss_pred eEEEEECCCcccH-HHHHHHHHHHHhcCCcEEEEEEcCCHHHHHHhCC--CCCHHHHHHHHHCCEEEEccCCCCccchHH
Confidence 3689999999999 9999999999999999999999999988889997 89999999999999999999952 1
Q ss_pred -hhhhcccceeeeeeeccCCCCCCCCCccEEEEccCCCccccCceeeeeCCEEEEEEEecHHHHHHHHHHHHHHHHhC--
Q psy8787 118 -ASVEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLITEEASSRVAEFAFEYAKTN-- 194 (364)
Q Consensus 118 -LR~~ldlyanvRP~~~~pg~~~~~~~iD~vIvREnteg~Y~g~~~~~~~~~a~~~~~~t~~~~eriar~Af~~A~~~-- 194 (364)
||+.||||+|+||||++||++++++++|+|||||||||+|+|++++..++++.+++++||++++||+|+||+||++|
T Consensus 79 ~LR~~ldlyanvRP~r~~pg~~~~~~~iD~vivREnteG~Y~g~~~~~~~~~~~~~~~~Tr~~~~Ri~r~Af~~A~~r~~ 158 (330)
T PRK14025 79 KLRRILDTYANVRPVKSYKGVKCLYPDIDYVIVRENTEGLYKGIEAEIADGVTVATRVITRKASERIFRFAFEMAKRRKK 158 (330)
T ss_pred HHHHHcCCeEEEEEeecCCCCCCccCCcCEEEEEECCCceecCcccccCCCceEEeEeccHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999887778999999999999999999999999999
Q ss_pred --CCCceEEEEeCcccccccHHHHHHHHHHhhcCCCeeEeeEeHHHHHHHHhcCCCCccEEEeCCCcchhhhhhhhhccC
Q psy8787 195 --NRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVG 272 (364)
Q Consensus 195 --~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp~i~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~GDIlSD~aa~l~G 272 (364)
++|+||++||+|||+.||+||+++|+|++++||+|++++++||++|||||++|++||||||+|||||||||++|+++|
T Consensus 159 ~~~~k~Vt~v~KaNvl~~t~glf~e~~~eva~~yp~i~~~~~~vDa~~~~lv~~P~~fDVivt~NlfGDILSDlaa~l~G 238 (330)
T PRK14025 159 MGKEGKVTCAHKANVLKKTDGLFKKTFYEVAKEYPDIKAEDYYVDAMNMYIITRPQTFDVVVTSNLFGDILSDGAAGLVG 238 (330)
T ss_pred cCCCCeEEEEECCCchhhhhHHHHHHHHHHHhhCCCeEEEeeeHHHHHHHHhcCcccCcEEEEcCcccchhhHHHHHhcC
Confidence 677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccccCCCceeEeeccCCCCCccCCCCCChhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHcCccccCCCCCCC
Q psy8787 273 GLGLTPSGNIGLNGALFESVHGTAPDIAGKDLANPTALLLSAVMMLRHLDLNTHADVIQKAALDTIKEGKYRTGDLGGKA 352 (364)
Q Consensus 273 ~lGl~psa~ig~~~~~fEp~HGsapdiaGk~~aNP~a~ils~ammL~~lg~~~~a~~i~~Av~~~~~~g~~~T~Dlgg~~ 352 (364)
|+||+||+|+|++++||||+|||||||||||+|||+|+|||++|||||||++++|++|++||++++++|. +|+||||++
T Consensus 239 glGl~psanig~~~a~FEp~HGSAPdiAGk~iANP~a~IlS~ammL~~lG~~~~A~~I~~Av~~vl~~g~-~T~DlGG~~ 317 (330)
T PRK14025 239 GLGLAPSANIGDKYGLFEPVHGSAPDIAGKGIANPTATILTAVLMLRHLGENEEADKVEKALEEVLALGL-TTPDLGGNL 317 (330)
T ss_pred CCCcccceeeCCCcceeEcCCCCchhhCCCCCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcCC-CCcccCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999995 899999999
Q ss_pred CHHHHHHHHHhC
Q psy8787 353 KCSEFTNEICSK 364 (364)
Q Consensus 353 ~T~e~~~av~~~ 364 (364)
||+||+|+|+++
T Consensus 318 ~T~e~~~av~~~ 329 (330)
T PRK14025 318 STMEMAEEVAKR 329 (330)
T ss_pred CHHHHHHHHHHh
Confidence 999999999974
No 5
>PLN00118 isocitrate dehydrogenase (NAD+)
Probab=100.00 E-value=1.4e-109 Score=815.12 Aligned_cols=321 Identities=55% Similarity=0.898 Sum_probs=309.2
Q ss_pred CCCCCccccCCCCcCHHHHHHHHHHHHhhcCCCceeEEEEeeeeeecCCCCccccchhHHHHhhhcCEEEEccccc----
Q psy8787 41 ISQWSWRGLKVQGLGEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVCNSNYATKWFSER---- 116 (364)
Q Consensus 41 ~~~~~i~~i~GDGIGp~EV~a~~r~Vl~a~g~~i~~~~vdig~~re~~~G~Y~~lp~etl~~ik~~daiLkGav~~---- 116 (364)
...++|.+|||||||| ||++++++|+++.+++++|+++++|...++++|. .+|++++++++++|++||||++.
T Consensus 39 ~~~~~I~vipGDGIGp-EV~~aa~~Vl~a~~~~ie~~~~~~G~~~~~~~G~--~lp~~~l~~~~~~da~L~G~i~~p~~~ 115 (372)
T PLN00118 39 STPITATLFPGDGIGP-EIAESVKQVFTAAGVPIEWEEHYVGTTVDPRTGS--FLTWESLESVRRNKVGLKGPMATPIGK 115 (372)
T ss_pred CCCeEEEEECCCcccH-HHHHHHHHHHHhcCCCeEEEEEeCcHHHHHhcCC--cCCHHHHHHHHHCCEEEECCccCCccc
Confidence 4457899999999999 9999999999999999999999999988889997 89999999999999999999941
Q ss_pred c-------hhhhcccceeeeeeeccCCCCCCCCCccEEEEccCCCccccCceeeeeCCEEEEEEEecHHHHHHHHHHHHH
Q psy8787 117 G-------ASVEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLITEEASSRVAEFAFE 189 (364)
Q Consensus 117 g-------LR~~ldlyanvRP~~~~pg~~~~~~~iD~vIvREnteg~Y~g~~~~~~~~~a~~~~~~t~~~~eriar~Af~ 189 (364)
+ ||+.||||+|+||||++||++++++++|+|||||||||+|+|.+++..+|++.++++|||+++|||+|+||+
T Consensus 116 ~~~s~~~~LRk~ldLyaNvRPvr~~pg~~~~~~~iD~vIVREnteG~Y~g~~~~~~~gv~~~~~v~Tr~~~eRIar~AF~ 195 (372)
T PLN00118 116 GHRSLNLTLRKELGLYANVRPCYSLPGYKTRYDDVDLVTIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFH 195 (372)
T ss_pred cccCchHHHHHHcCCeeeecccccCCCccCcccCceEEEEEecCCCcccceeeeccCCeEEEEEecCHHHHHHHHHHHHH
Confidence 1 999999999999999999999999999999999999999999998877889999999999999999999999
Q ss_pred HHHhCCCCceEEEEeCcccccccHHHHHHHHHHhhcCCCeeEeeEeHHHHHHHHhcCCCCccEEEeCCCcchhhhhhhhh
Q psy8787 190 YAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAG 269 (364)
Q Consensus 190 ~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp~i~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~GDIlSD~aa~ 269 (364)
||++|++|+||++||+|||+.+|++|+++|+|++++||+|++++++||++|||||++|++||||||+|||||||||++++
T Consensus 196 ~A~~r~~k~Vt~v~KaNvlk~tdglf~e~~~eva~eyPdI~~~~~~VDa~a~~Lv~~P~~fDViVt~NLfGDILSDlaa~ 275 (372)
T PLN00118 196 YAKTHGRKRVSAIHKANIMKKTDGLFLKCCREVAEKYPEIVYEEVIIDNCCMMLVKNPALFDVLVMPNLYGDIISDLCAG 275 (372)
T ss_pred HHHHcCCCeEEEEECCccchhhhHHHHHHHHHHHhhCCCceEEeeeHHHHHHHhccCcccCcEEEEcCcccchhhHHHHH
Confidence 99999888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcccccccCCC-ceeEeeccCCCCCccCCCCCChhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHcCccccCCC
Q psy8787 270 LVGGLGLTPSGNIGLN-GALFESVHGTAPDIAGKDLANPTALLLSAVMMLRHLDLNTHADVIQKAALDTIKEGKYRTGDL 348 (364)
Q Consensus 270 l~G~lGl~psa~ig~~-~~~fEp~HGsapdiaGk~~aNP~a~ils~ammL~~lg~~~~a~~i~~Av~~~~~~g~~~T~Dl 348 (364)
++||+||+||+|+|++ .+||||+|||||||||||+|||+|||||++|||||||++++|++|++||.+++++|+++|+||
T Consensus 276 l~GglGlapSanig~~~~a~FEpvHGSAPdIAGk~iANP~A~IlS~amML~~lG~~~~A~~I~~Av~~~l~~G~~~T~Dl 355 (372)
T PLN00118 276 LIGGLGLTPSCNIGENGLALAEAVHGSAPDIAGKNLANPTALLLSAVMMLRHLKLNEQAEQIHNAILNTIAEGKYRTADL 355 (372)
T ss_pred hcCCcccCcceeecCCCCeEEECCCCChhhhCCCCCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHcCCccCccc
Confidence 9999999999999988 599999999999999999999999999999999999999999999999999999997689999
Q ss_pred CCCCCHHHHHHHHHhC
Q psy8787 349 GGKAKCSEFTNEICSK 364 (364)
Q Consensus 349 gg~~~T~e~~~av~~~ 364 (364)
||++||+||+|+|+++
T Consensus 356 GG~~sT~e~~dav~~~ 371 (372)
T PLN00118 356 GGSSTTTDFTKAICDH 371 (372)
T ss_pred CCCcCHHHHHHHHHhh
Confidence 9999999999999974
No 6
>PLN00123 isocitrate dehydrogenase (NAD+)
Probab=100.00 E-value=4.8e-109 Score=807.29 Aligned_cols=343 Identities=39% Similarity=0.647 Sum_probs=317.5
Q ss_pred cccccccccccceeEeeccchhhhcccccCCCCCCCCccccCCCCcCHHHHHHHHHHHHhhcCCCceeEEEEeeeeeecC
Q psy8787 9 LLKLPLQCNTVETISYLTLSELISAQYINTPSISQWSWRGLKVQGLGEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENT 88 (364)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~i~GDGIGp~EV~a~~r~Vl~a~g~~i~~~~vdig~~re~~ 88 (364)
|||-.++-.-|+|-|-.+......+++ ...++|.+|||||||| ||++++++|+++.+++++|+++++|..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~I~vipGDGIGp-EV~~~a~~vl~a~~~~i~~~~~~~G~~---- 70 (360)
T PLN00123 1 LLKRLLSNALGSKAQRRSVTYMPRPGD-----GAPRAVTLIPGDGIGP-LVTGAVEQVMEAMHAPVYFERYEVHGD---- 70 (360)
T ss_pred ChhhhhhhhhhhhhccCCcccCCcccC-----CCceEEEEECCCCccH-HHHHHHHHHHHhCCCceEEEEEccCCC----
Confidence 456666777788877766654332222 1247899999999999 999999999999999999999999864
Q ss_pred CCCccccchhHHHHhhhcCEEEEcccc-c---c-------hhhhcccceeeeeeeccCCCCCCCCCccEEEEccCCCccc
Q psy8787 89 EGEYSGIEHEIVDGVCNSNYATKWFSE-R---G-------ASVEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEY 157 (364)
Q Consensus 89 ~G~Y~~lp~etl~~ik~~daiLkGav~-~---g-------LR~~ldlyanvRP~~~~pg~~~~~~~iD~vIvREnteg~Y 157 (364)
|. .+|++++++++++|++||||++ . + ||+.||||+|+||||++||++++++++|+|||||||||+|
T Consensus 71 -~~--~lp~~~l~~~~~~da~L~Gavg~p~~~~~~s~~l~LR~~ldLyaNvRP~k~~pg~~~~~~~iD~viVREnteG~Y 147 (360)
T PLN00123 71 -MK--KVPEEVLESIRRNKVCLKGGLATPVGGGVSSLNVQLRKELDLFASLVNCFNLPGLPTRHENVDIVVIRENTEGEY 147 (360)
T ss_pred -Cc--cCCHHHHHHHHHCCEEEEccccCCCCcCccchHHHHHHHcCCEEEEEEeecCCCCCCccCCCCEEEEEeCCCcee
Confidence 43 7999999999999999999994 1 1 9999999999999999999999999999999999999999
Q ss_pred cCceeeeeCCEEEEEEEecHHHHHHHHHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhhcCCCeeEeeEeHH
Q psy8787 158 SGIEHEIVDGVVQSIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLD 237 (364)
Q Consensus 158 ~g~~~~~~~~~a~~~~~~t~~~~eriar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp~i~~~~~~vD 237 (364)
+|.+++..+|++.++++|||+++|||+|+||+||++|+|||||++||+|||+.+|+||+++|+|++++||+|+++|++||
T Consensus 148 ~g~~~~~~~g~~~~~~v~Tr~~~eRIar~AF~~A~~r~rkkVt~v~KaNvl~~t~glf~~~~~eva~eyPdV~~~~~~VD 227 (360)
T PLN00123 148 SGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVAKKYPGIKYNEIIVD 227 (360)
T ss_pred ccceeecCCCceEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECCccccchhhHHHHHHHHHHhhCCCceEeeeeHH
Confidence 99998877889999999999999999999999999988889999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCccEEEeCCCcchhhhhhhhhccCCCCcccccccCCCceeEeecc--CCC--CCccCCCCCChhHHHHH
Q psy8787 238 TVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFESVH--GTA--PDIAGKDLANPTALLLS 313 (364)
Q Consensus 238 ~~~~~lv~~P~~fdVivt~Nl~GDIlSD~aa~l~G~lGl~psa~ig~~~~~fEp~H--Gsa--pdiaGk~~aNP~a~ils 313 (364)
++|||||++|++||||||+|||||||||+||+|+||+||+||+|+|++++||||+| ||| |||||||+|||+|||||
T Consensus 228 a~~~~Lv~~P~~fDViVt~NlfGDILSDlaa~l~GglGl~pSanig~~~a~FEpvh~hGSA~~PdIAGk~iANP~a~IlS 307 (360)
T PLN00123 228 NCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGADHAVFEQGASAGNVGNEKLVEQKKANPVALLLS 307 (360)
T ss_pred HHHHHHhhCcccCcEEEEcCcccchhhhHHHHhcCCcCccceEeeCCCceEEEecccCCCcCCccccCCCccChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999976 999 99999999999999999
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHcCccccCCCCCCCCHHHHHHHHHhC
Q psy8787 314 AVMMLRHLDLNTHADVIQKAALDTIKEGKYRTGDLGGKAKCSEFTNEICSK 364 (364)
Q Consensus 314 ~ammL~~lg~~~~a~~i~~Av~~~~~~g~~~T~Dlgg~~~T~e~~~av~~~ 364 (364)
++|||+|||++++|++|++||.+++++|+.+|+||||++||+||+|+|+++
T Consensus 308 ~amML~~lG~~~~A~~I~~AV~~~l~~G~~~T~DlGG~~sT~e~~~ai~~~ 358 (360)
T PLN00123 308 SAMMLRHLQFPSFADRLETAVKRVIAEGKYRTKDLGGSSTTQEVVDAVIAN 358 (360)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHcCCccCcccCCCcCHHHHHHHHHHh
Confidence 999999999999999999999999999955899999999999999999874
No 7
>PRK08194 tartrate dehydrogenase; Provisional
Probab=100.00 E-value=3.2e-107 Score=796.63 Aligned_cols=318 Identities=28% Similarity=0.468 Sum_probs=299.9
Q ss_pred CCCCccccCCCCcCHHHHHHHHHHHHhhc-----CCCceeEEEEeeeeeecCCCCccccchhHHHHhhhcCEEEEcccc-
Q psy8787 42 SQWSWRGLKVQGLGEFNLYANVRPCRSLE-----GYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVCNSNYATKWFSE- 115 (364)
Q Consensus 42 ~~~~i~~i~GDGIGp~EV~a~~r~Vl~a~-----g~~i~~~~vdig~~re~~~G~Y~~lp~etl~~ik~~daiLkGav~- 115 (364)
+.++|.+|||||||| ||++++++|++++ +++++|.++++|...+.++|+ ++|+++++.|+++|++||||++
T Consensus 2 ~~~~I~vipGDGIGp-EV~~~a~~vl~a~~~~~~~~~~e~~~~~~G~~~~~~~G~--~lp~~tl~~~k~~dail~G~vg~ 78 (352)
T PRK08194 2 KQFKIAVIPGDGVGK-EVVPAAVRVLKAVAEVHGGLKFEFTEFPWSCEYYLEHGE--MMPEDGLEQLKQFDAIFLGAVGN 78 (352)
T ss_pred CceEEEEECCCCchH-HHHHHHHHHHHHHHhhccCCceEEEEEcCcHHHHHHhCC--CCCHHHHHHHHhCCEEEEcccCC
Confidence 357899999999999 9999999999975 578999999999988889997 8999999999999999999994
Q ss_pred -----c-------c--hhhhcccceeeeeeeccCCCCCCC---CCccEEEEccCCCccccCceeeee---CCEEEEEEEe
Q psy8787 116 -----R-------G--ASVEFNLYANVRPCRSLEGYPTLY---DDVDVVTIRENTEGEYSGIEHEIV---DGVVQSIKLI 175 (364)
Q Consensus 116 -----~-------g--LR~~ldlyanvRP~~~~pg~~~~~---~~iD~vIvREnteg~Y~g~~~~~~---~~~a~~~~~~ 175 (364)
. . ||+.||||+|+||||++||+++|+ +++|+|||||||||+|+|.++... .+++.++++|
T Consensus 79 p~~~~~~~~~~~~~l~LR~~ldLyaNvRP~k~~pg~~splk~~~~iD~vivREnteG~Y~g~~~~~~~g~~~~a~~~~~~ 158 (352)
T PRK08194 79 PKLVPDHISLWGLLIKIRREFEQVINIRPAKQLRGIKSPLANPKDFDLLVVRENSEGEYSEVGGRIHRGEDEIAIQNAVF 158 (352)
T ss_pred CCcCCCCCCchhhHHHHHHHcCCEEEEEeeecCCCCCCCCCCCCCCCEEEEEeCCCccccCCCccccCCccceEEEEEEe
Confidence 1 1 999999999999999999999886 689999999999999999875542 2468899999
Q ss_pred cHHHHHHHHHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhhcCCCeeEeeEeHHHHHHHHhcCCCCccEEEe
Q psy8787 176 TEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLDTVCLNMVQDPTQYDVLVM 255 (364)
Q Consensus 176 t~~~~eriar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp~i~~~~~~vD~~~~~lv~~P~~fdVivt 255 (364)
||+++|||+|+||++|++| +++||+|||+|||+.+|+||+++|+|++++||+|+++++|||++|||||++|++||||||
T Consensus 159 Tr~~~eRI~r~Af~~A~~r-~~~Vt~v~KaNvl~~t~~lf~~~~~eva~~yp~V~~~~~~vDa~~~~Lv~~P~~fDVIVt 237 (352)
T PRK08194 159 TRKGTERAMRYAFELAAKR-RKHVTSATKSNGIVHSMPFWDEVFQEVGKDYPEIETDSQHIDALAAFFVTRPEEFDVIVA 237 (352)
T ss_pred eHHHHHHHHHHHHHHHHHc-CCcEEEEeCcchhhhhHHHHHHHHHHHHhhCCCceeeehhHHHHHHHHhhChhhCcEEEE
Confidence 9999999999999999998 678999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchhhhhhhhhccCCCCcccccccCCC--c-eeEeeccCCCCCccCCCCCChhHHHHHHHHHHHhcCcHHHHHHHHH
Q psy8787 256 PNLYGDILSDMCAGLVGGLGLTPSGNIGLN--G-ALFESVHGTAPDIAGKDLANPTALLLSAVMMLRHLDLNTHADVIQK 332 (364)
Q Consensus 256 ~Nl~GDIlSD~aa~l~G~lGl~psa~ig~~--~-~~fEp~HGsapdiaGk~~aNP~a~ils~ammL~~lg~~~~a~~i~~ 332 (364)
+|||||||||++++++||+||+||+|+|++ . +||||+|||||||||||+|||+|+|||++|||||||++++|++|++
T Consensus 238 ~NlfGDILSDlaa~l~GslGl~pSanig~~~~~~alFEp~HGSAPdiAGk~iANP~a~IlS~amML~~lg~~~~A~~i~~ 317 (352)
T PRK08194 238 SNLFGDILTDIGAAIMGSIGIAPAANINVNGKYPSMFEPVHGSAPDIAGKGIANPIGQIWTAKLMLDHFGEEELGSHLLD 317 (352)
T ss_pred ccchHHHHhHHHHHhcCCccccceeeecCCCCcceEEECCCCCchhhCCCCcCCcHHHHHHHHHHHHHcCChhHHHHHHH
Confidence 999999999999999999999999999954 4 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCccccCCCCCCCCHHHHHHHHHhC
Q psy8787 333 AALDTIKEGKYRTGDLGGKAKCSEFTNEICSK 364 (364)
Q Consensus 333 Av~~~~~~g~~~T~Dlgg~~~T~e~~~av~~~ 364 (364)
||++++++|. +|+||||++||+||+|+|+++
T Consensus 318 Av~~~l~~g~-~T~DlGG~~~T~e~~~ai~~~ 348 (352)
T PRK08194 318 VIEDVTEDGI-KTPDIGGRATTDEVTDEIISR 348 (352)
T ss_pred HHHHHHHcCC-CcCcCCCCcCHHHHHHHHHHH
Confidence 9999999994 899999999999999999873
No 8
>TIGR02089 TTC tartrate dehydrogenase. Tartrate dehydrogenase catalyzes the oxidation of both meso- and (+)-tartrate as well as a D-malate. These enzymes are closely related to the 3-isopropylmalate and isohomocitrate dehydrogenases found in TIGR00169 and TIGR02088, respectively.
Probab=100.00 E-value=4.4e-107 Score=796.38 Aligned_cols=318 Identities=32% Similarity=0.518 Sum_probs=299.9
Q ss_pred CCCCccccCCCCcCHHHHHHHHHHHHhhc-----CCCceeEEEEeeeeeecCCCCccccchhHHHHhhhcCEEEEcccc-
Q psy8787 42 SQWSWRGLKVQGLGEFNLYANVRPCRSLE-----GYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVCNSNYATKWFSE- 115 (364)
Q Consensus 42 ~~~~i~~i~GDGIGp~EV~a~~r~Vl~a~-----g~~i~~~~vdig~~re~~~G~Y~~lp~etl~~ik~~daiLkGav~- 115 (364)
+.++|.+|||||||| ||++++++|++++ +++++|.++++|...++++|+ ++|+++++.|+++|++||||++
T Consensus 2 ~~~~I~vipGDGIGp-EV~~aa~~Vl~a~~~~~~~~~~~~~~~~~G~~~~~~~G~--~lp~~tl~~~k~~da~L~G~vg~ 78 (352)
T TIGR02089 2 KQYRIAAIPGDGIGK-EVVAAALQVLEAAAKRHGGFSLHFTEFPWSCDYYKEHGK--MMPEDGLEKLKKFDAIFLGAVGW 78 (352)
T ss_pred CceEEEEECCCcccH-HHHHHHHHHHHHHHhhcCCcceEEEEECCcHHHHHHhCC--CCCHHHHHHHHhCCEEEEecccC
Confidence 457899999999999 9999999999976 489999999999988889997 8999999999999999999983
Q ss_pred -----c-------c--hhhhcccceeeeeeeccCCCCCCC-----CCccEEEEccCCCccccCceeeee----CCEEEEE
Q psy8787 116 -----R-------G--ASVEFNLYANVRPCRSLEGYPTLY-----DDVDVVTIRENTEGEYSGIEHEIV----DGVVQSI 172 (364)
Q Consensus 116 -----~-------g--LR~~ldlyanvRP~~~~pg~~~~~-----~~iD~vIvREnteg~Y~g~~~~~~----~~~a~~~ 172 (364)
. . |||.||||+|+||||++||+++|+ +++|+|||||||||+|+|.+++.. .+.+.++
T Consensus 79 p~~~~~~~~~~~~~l~LRk~ldLyaNvRP~~~~~g~~sp~k~~~~~~iD~vivREnteG~Y~G~~~~~~~~~~~~~a~~~ 158 (352)
T TIGR02089 79 PALVPDHISLWGLLLKIRREFDQYANVRPAKLLPGVTSPLRNCGPGDFDFVVVRENSEGEYSGVGGRIHRGTDEEVATQN 158 (352)
T ss_pred CCCCCCccCchhhHHHHHHHcCCeEEEEEeecCCCCCCccccccCCCCCEEEEEecCCcccccccccccCCccceeEEEe
Confidence 0 1 999999999999999999999887 689999999999999999975533 2467899
Q ss_pred EEecHHHHHHHHHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhhcCCCeeEeeEeHHHHHHHHhcCCCCccE
Q psy8787 173 KLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLDTVCLNMVQDPTQYDV 252 (364)
Q Consensus 173 ~~~t~~~~eriar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp~i~~~~~~vD~~~~~lv~~P~~fdV 252 (364)
++|||++++||+|+||+||++| ++|||++||+|||+.||+||+++|++++++||+|+++|+|||++|||||++|++|||
T Consensus 159 ~~~tr~~~eRi~r~Af~~A~~r-r~kVt~v~KaNvl~~t~~lf~~~~~eva~~yp~v~~~~~~vD~~~~~lv~~P~~fDV 237 (352)
T TIGR02089 159 AIFTRKGVERIMRFAFELAQKR-RKHLTSATKSNGIRHSMPFWDEVFAEVAAEYPDVEWDSYHIDALAARFVLKPETFDV 237 (352)
T ss_pred EEecHHHHHHHHHHHHHHHHHc-CCCEEEEeCCcchhhhhHHHHHHHHHHHhhCCCceEeeehHHHHHHHHhcChhhCcE
Confidence 9999999999999999999998 789999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCcchhhhhhhhhccCCCCcccccccCCC-c--eeEeeccCCCCCccCCCCCChhHHHHHHHHHHHhcCcHHHHHH
Q psy8787 253 LVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLN-G--ALFESVHGTAPDIAGKDLANPTALLLSAVMMLRHLDLNTHADV 329 (364)
Q Consensus 253 ivt~Nl~GDIlSD~aa~l~G~lGl~psa~ig~~-~--~~fEp~HGsapdiaGk~~aNP~a~ils~ammL~~lg~~~~a~~ 329 (364)
|||+|||||||||++++++||+||+||+|+|++ . +||||+|||||||||||+|||+|||||++|||||||++++|++
T Consensus 238 ivt~NlfGDILSD~aa~l~GglGl~psanig~~~~~~a~fEp~HGSAPdiAGk~iANP~a~Ils~amML~~lg~~~~A~~ 317 (352)
T TIGR02089 238 IVASNLFGDILSDLGAALMGSLGVAPSANINPEGKFPSMFEPVHGSAPDIAGKGIANPIGAIWTAAMMLEHLGEKEAGAK 317 (352)
T ss_pred EEecccchhhhhHHHHHhcCCccccceEEecCCCCcceeeecCCCCchhhcCCCccCcHHHHHHHHHHHHHcCChhHHHH
Confidence 999999999999999999999999999999965 2 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCccccCCCCCCCCHHHHHHHHHhC
Q psy8787 330 IQKAALDTIKEGKYRTGDLGGKAKCSEFTNEICSK 364 (364)
Q Consensus 330 i~~Av~~~~~~g~~~T~Dlgg~~~T~e~~~av~~~ 364 (364)
|++||.+++++|. +|+||||++||+||+|+|+++
T Consensus 318 I~~Av~~~l~~g~-~T~DlGG~~sT~e~~~ai~~~ 351 (352)
T TIGR02089 318 IMDAIERVTAAGI-LTPDVGGKATTSEVTEAVCNA 351 (352)
T ss_pred HHHHHHHHHHcCC-ccCCCCCCcCHHHHHHHHHhh
Confidence 9999999999995 899999999999999999874
No 9
>PRK09222 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=1e-106 Score=814.10 Aligned_cols=320 Identities=37% Similarity=0.570 Sum_probs=306.2
Q ss_pred CCCCccccCCCCcCHHHHHHHHHHHHhhcCCCceeEEEEeeeeeecCCCCccccchhHHHHhhhcCEEEEcccc----cc
Q psy8787 42 SQWSWRGLKVQGLGEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVCNSNYATKWFSE----RG 117 (364)
Q Consensus 42 ~~~~i~~i~GDGIGp~EV~a~~r~Vl~a~g~~i~~~~vdig~~re~~~G~Y~~lp~etl~~ik~~daiLkGav~----~g 117 (364)
..++|++|||||||| ||++++++|+++++.+++|+++++|...+.++|. .++|++++++++++|++||||++ .+
T Consensus 3 ~~~~I~vipGDGIGP-EV~~a~~~VL~a~~~~i~~~~~~~G~~~~~~~g~-~~lp~~~~~~i~~~da~LkG~i~tP~~~~ 80 (482)
T PRK09222 3 EKTPITVAYGDGIGP-EIMEAVLKILEAAGAPLEIETIEIGEKVYKKGWT-SGISPSAWESIRRTKVLLKAPITTPQGGG 80 (482)
T ss_pred CcceEEEECCCcccH-HHHHHHHHHHHhcCCceEEEEEcCCHHHHHhcCC-CCCCHHHHHHHHHCCEEEEccccCCCccC
Confidence 457899999999999 9999999999999999999999999988777763 37999999999999999999994 11
Q ss_pred -------hhhhcccceeeeeeecc-CCCCCCCCCccEEEEccCCCccccCceeeeeCCEEEEEEEecHHHHHHHHHHHHH
Q psy8787 118 -------ASVEFNLYANVRPCRSL-EGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLITEEASSRVAEFAFE 189 (364)
Q Consensus 118 -------LR~~ldlyanvRP~~~~-pg~~~~~~~iD~vIvREnteg~Y~g~~~~~~~~~a~~~~~~t~~~~eriar~Af~ 189 (364)
||+.||||+|+||||++ ||++++++++|+|||||||||+|+|+|++..+++++++++|||+++|||+|+||+
T Consensus 81 ~~s~~~~LRk~ldLYaNvRP~r~~~pgv~~~~~~iD~vIVRENtEG~Y~G~e~~~~~~~~~~~k~iTr~~~eRI~r~AFe 160 (482)
T PRK09222 81 YKSLNVTLRKTLGLYANVRPCVSYHPFVETKHPNLDVVIIRENEEDLYAGIEHRQTPDVYQCLKLISRPGSEKIIRYAFE 160 (482)
T ss_pred ccchHHHHHHHcCCeEEeeeEEecCCCCCCCCCCcCEEEEEeccCCeeccceeecCCCeeeEeeccCHHHHHHHHHHHHH
Confidence 99999999999999999 9999999999999999999999999999877889999999999999999999999
Q ss_pred HHHhCCCCceEEEEeCcccccccHHHHHHHHHHhhcCCCeeEeeEeHHHHHHHHhcCCCCccEEEeCCCcchhhhhhhhh
Q psy8787 190 YAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAG 269 (364)
Q Consensus 190 ~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp~i~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~GDIlSD~aa~ 269 (364)
||++|+|+|||++||+|||+.|||||+++|+|++++||+|+++|++||++||+||++|++||||||+|||||||||+||+
T Consensus 161 ~A~~r~rkkVt~v~KaNVmk~tdglf~~v~~eva~eyPdI~~~~~~VDa~a~~Lv~~P~~FDVIVt~NLfGDILSDlaa~ 240 (482)
T PRK09222 161 YARANGRKKVTCLTKDNIMKLTDGLFHKVFDEIAKEYPDIEAEHYIVDIGAARLATNPENFDVIVTPNLYGDILSDIAAE 240 (482)
T ss_pred HHHhcCCCeEEEEECCCcccccchHHHHHHHHHHhhCCCceEeeeeHHHHHHHHhcCcccceEEEEcccccchhhHHHHH
Confidence 99999888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcccccccCCCceeEeeccCCCCCccCCCCCChhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHcCccccCCCC
Q psy8787 270 LVGGLGLTPSGNIGLNGALFESVHGTAPDIAGKDLANPTALLLSAVMMLRHLDLNTHADVIQKAALDTIKEGKYRTGDLG 349 (364)
Q Consensus 270 l~G~lGl~psa~ig~~~~~fEp~HGsapdiaGk~~aNP~a~ils~ammL~~lg~~~~a~~i~~Av~~~~~~g~~~T~Dlg 349 (364)
++||+||+||+|+|++++||||+|||||||||||||||+|+|||++|||+|||++++|++|++||.+++++|. +|+|||
T Consensus 241 l~GslGlapSanig~~~amFEpvHGSAPdIAGk~iANP~a~IlSaamML~hlG~~~~A~~I~~Av~~tl~~G~-~T~Dl~ 319 (482)
T PRK09222 241 ISGSVGLAGSANIGEEYAMFEAVHGSAPDIAGKNIANPSGLLNAAVMMLVHIGQFDIAELIENAWLKTLEDGI-HTADIY 319 (482)
T ss_pred hcCCcccccceecCCCceeeECCCCCchhhcCCCccCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHcCC-CCcccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999995 899995
Q ss_pred C------CCCHHHHHHHHHhC
Q psy8787 350 G------KAKCSEFTNEICSK 364 (364)
Q Consensus 350 g------~~~T~e~~~av~~~ 364 (364)
| +++|+||+|+|+++
T Consensus 320 g~~~~~~~~~T~e~~~aVi~~ 340 (482)
T PRK09222 320 NEGVSKKKVGTKEFAEAVIEN 340 (482)
T ss_pred CCCCCCCCcCHHHHHHHHHHH
Confidence 5 58999999999874
No 10
>TIGR00175 mito_nad_idh isocitrate dehydrogenase, NAD-dependent, mitochondrial type. The NADP-dependent IDH of Thermus aquaticus thermophilus strain HB8 resembles these NAD-dependent IDH, except for the residues involved in cofactor specificity, much more closely than it resembles other prokaryotic NADP-dependent IDH, including that of Thermus aquaticus strain YT1.
Probab=100.00 E-value=2.4e-106 Score=787.33 Aligned_cols=318 Identities=49% Similarity=0.809 Sum_probs=304.0
Q ss_pred CCCCccccCCCCcCHHHHHHHHHHHHhhcCCCceeEEEEeeeeeecCCCCccccchhHHHHhhhcCEEEEcccc-----c
Q psy8787 42 SQWSWRGLKVQGLGEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVCNSNYATKWFSE-----R 116 (364)
Q Consensus 42 ~~~~i~~i~GDGIGp~EV~a~~r~Vl~a~g~~i~~~~vdig~~re~~~G~Y~~lp~etl~~ik~~daiLkGav~-----~ 116 (364)
+.++|.+|||||||| ||++++++|+++++++++|+++++|.. +.+|+ .+|++++++++++|++||||++ .
T Consensus 2 g~~~i~vlpGDGIGp-Ev~~~a~~vl~~~~~~i~~~~~~~G~~--~~~g~--~lp~~~l~~~~~~da~l~Gav~~p~~~~ 76 (333)
T TIGR00175 2 GKYTVTLIPGDGIGP-EISGSVKKIFRAANVPIEFEEIDVSPQ--TDGKT--EIPDEAVESIKRNKVALKGPLETPIGKG 76 (333)
T ss_pred CcEEEEEECCCcccH-HHHHHHHHHHHhCCCceEEEEEecChh--hccCC--cCCHHHHHHHHHCCEEEEcccCCccccc
Confidence 346899999999999 999999999999999999999999985 46786 7999999999999999999993 1
Q ss_pred ---c----hhhhcccceeeeeeeccCCCCCCCCCccEEEEccCCCccccCceeeeeCCEEEEEEEecHHHHHHHHHHHHH
Q psy8787 117 ---G----ASVEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLITEEASSRVAEFAFE 189 (364)
Q Consensus 117 ---g----LR~~ldlyanvRP~~~~pg~~~~~~~iD~vIvREnteg~Y~g~~~~~~~~~a~~~~~~t~~~~eriar~Af~ 189 (364)
+ ||+.||||+|+||||++||++++++++|+|||||||||+|+|.+++..++++.+++++||++++||+|+||+
T Consensus 77 ~~~s~~~~lR~~ldlyanvRP~k~~pg~~~~~~~iD~vivREnteG~Y~g~~~~~~~~~~~~~~~~Tr~~~eRi~r~Af~ 156 (333)
T TIGR00175 77 GHRSLNVALRKELDLYANVVHCKSLPGFKTRHEDVDIVIIRENTEGEYSGLEHESVPGVVESLKVITRDKSERIARYAFE 156 (333)
T ss_pred cccchhHHHHHHcCCEEEeEEecCCCCCCCCCCCcCEEEEEEeCCCcccceeEeccCCeEEEEEecCHHHHHHHHHHHHH
Confidence 1 999999999999999999999999999999999999999999998877889999999999999999999999
Q ss_pred HHHhCCCCceEEEEeCcccccccHHHHHHHHHHhhcCCCeeEeeEeHHHHHHHHhcCCCCccEEEeCCCcchhhhhhhhh
Q psy8787 190 YAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAG 269 (364)
Q Consensus 190 ~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp~i~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~GDIlSD~aa~ 269 (364)
||++|+++|||++||+|||+.+|++|+++|+|++++||+|+++|++||+++|+||++|++||||||+|||||||||++++
T Consensus 157 ~A~~r~~k~Vt~v~KaNvl~~t~glf~~~~~eva~~yp~v~~~~~~vDa~~~~lv~~P~~fdViVt~NlfGDILSDlaa~ 236 (333)
T TIGR00175 157 YARKNGRKKVTAVHKANIMKLADGLFLNVCREVAKEYPDITFESMIVDNTCMQLVSRPSQFDVMVMPNLYGNILSNLGAG 236 (333)
T ss_pred HHHhcCCCeEEEEECCccchhhHHHHHHHHHHHHHHCCCCeeeeeeHHHHHHHHhcCcccccEEEEccccchhhhHHHHH
Confidence 99999878899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcccccccCCCceeEeec-cCCCCCccCCCCCChhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHcCccccCCC
Q psy8787 270 LVGGLGLTPSGNIGLNGALFESV-HGTAPDIAGKDLANPTALLLSAVMMLRHLDLNTHADVIQKAALDTIKEGKYRTGDL 348 (364)
Q Consensus 270 l~G~lGl~psa~ig~~~~~fEp~-HGsapdiaGk~~aNP~a~ils~ammL~~lg~~~~a~~i~~Av~~~~~~g~~~T~Dl 348 (364)
++||+||+||+|+|++++||||+ |||||||||||+|||+|+|||++|||||||++++|++|++||.+++++|+.+|+||
T Consensus 237 l~GslGl~pSanig~~~a~fEp~~hGSApdiaGk~iaNP~a~Ils~ammL~~lG~~~~a~~i~~Av~~~l~~G~~~T~Dl 316 (333)
T TIGR00175 237 LVGGPGLVPGANIGRDYAVFEPGVRHTGPDIAGQNIANPTALILSSVMMLNHLGLKEHADRIQKAVLSTIAEGKNRTKDL 316 (333)
T ss_pred hcCCcccCceeEEcCCCceEeccCCCCchhhCCCCccChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcCCccChhc
Confidence 99999999999999989999995 59999999999999999999999999999999999999999999999996689999
Q ss_pred CCCCCHHHHHHHHHhC
Q psy8787 349 GGKAKCSEFTNEICSK 364 (364)
Q Consensus 349 gg~~~T~e~~~av~~~ 364 (364)
||++||+||+|+|+++
T Consensus 317 GG~~~T~e~~~ai~~~ 332 (333)
T TIGR00175 317 GGTATTSDFTEAVIKR 332 (333)
T ss_pred CCCcCHHHHHHHHHhh
Confidence 9999999999999974
No 11
>TIGR02924 ICDH_alpha isocitrate dehydrogenase. This family of mainly alphaproteobacterial enzymes is a member of the isocitrate/isopropylmalate dehydrogenase superfamily described by pfam00180. Every member of the seed of this model appears to have a TCA cycle lacking only a determined isocitrate dehydrogenase. The precise identity of the cofactor (NADH -- 1.1.1.41 vs. NADPH -- 1.1.1.42) is unclear.
Probab=100.00 E-value=1.7e-106 Score=809.84 Aligned_cols=316 Identities=34% Similarity=0.532 Sum_probs=303.1
Q ss_pred CccccCCCCcCHHHHHHHHHHHHhhcCCCceeEEEEeeeeeecCCC-CccccchhHHHHhhhcCEEEEcccc----cc--
Q psy8787 45 SWRGLKVQGLGEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEG-EYSGIEHEIVDGVCNSNYATKWFSE----RG-- 117 (364)
Q Consensus 45 ~i~~i~GDGIGp~EV~a~~r~Vl~a~g~~i~~~~vdig~~re~~~G-~Y~~lp~etl~~ik~~daiLkGav~----~g-- 117 (364)
.|++|||||||| |||+++++||++++.+++|+++++|...++++| . ++|++++++++++|++||||++ .+
T Consensus 2 ~I~vipGDGIGP-EV~~aa~~VL~a~~~~i~~~~~~~G~~~~~~~gg~--~lpdetl~~i~~~da~LkG~i~tp~~~~~~ 78 (473)
T TIGR02924 2 PITVAYGDGIGP-EIMEAVLLILKEAEAPIDIETIEIGEKVYKKGWPS--GISPSSWESIRRTKVLLKAPITTPQGGGHK 78 (473)
T ss_pred eEEEEcCCcccH-HHHHHHHHHHHhcCCCeEEEEEcCCHHHHHhhCCC--CCCHHHHHHHHHCCEEEECcccCCCccCcc
Confidence 388999999999 999999999999999999999999998877774 5 8999999999999999999994 11
Q ss_pred -----hhhhcccceeeeeeecc-CCCCCCCCCccEEEEccCCCccccCceeeeeCCEEEEEEEecHHHHHHHHHHHHHHH
Q psy8787 118 -----ASVEFNLYANVRPCRSL-EGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLITEEASSRVAEFAFEYA 191 (364)
Q Consensus 118 -----LR~~ldlyanvRP~~~~-pg~~~~~~~iD~vIvREnteg~Y~g~~~~~~~~~a~~~~~~t~~~~eriar~Af~~A 191 (364)
|||.||||+|+||||++ |+++++++++|+|||||||||+|+|+|++..++++++++++||+++|||+|+||+||
T Consensus 79 s~~~~LRk~ldLYANvRPv~~~~p~~~~~~~~vDiVIVRENtEGlY~G~e~~~~~~~~~~~kviTr~g~eRI~r~AFe~A 158 (473)
T TIGR02924 79 SLNVTLRKTLGLYANIRPCVSYHPFIETKSPNLNIVIVRENEEDLYTGIEYRQTPDTYECTKLITRSGSEKICRYAFEYA 158 (473)
T ss_pred cHHHHHHHHcCCeEEEEEeeccCCCCCCccCCcCEEEEEeccCceecCceeeccCChheEeEecCHHHHHHHHHHHHHHH
Confidence 89999999999999999 899999999999999999999999999987778899999999999999999999999
Q ss_pred HhCCCCceEEEEeCcccccccHHHHHHHHHHhhcCCCeeEeeEeHHHHHHHHhcCCCCccEEEeCCCcchhhhhhhhhcc
Q psy8787 192 KTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLV 271 (364)
Q Consensus 192 ~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp~i~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~GDIlSD~aa~l~ 271 (364)
++|+|||||++||+|||+.|||||+++|+|++++||+|+++|++||++||+|+++|++||||||+|||||||||++|+++
T Consensus 159 ~~r~rkkVT~v~KaNVmk~tdglf~e~~~eva~eyPdI~~e~~~VDa~a~~Lv~~P~~FDVIVt~NLfGDILSDlaA~l~ 238 (473)
T TIGR02924 159 RKHNRKKVTCLTKDNIMKMTDGIFHKIFDKIAAEYPDIESEHYIVDIGMARLATNPENFDVIVTPNLYGDILSDVAAEIS 238 (473)
T ss_pred HhcCCCeEEEEECCccccccchhHHHHHHHHHhhCCCcEEeeHHHHHHHHHHhhCcccceEEEEccccchhhhHHHHHhc
Confidence 99988899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccccCCCceeEeeccCCCCCccCCCCCChhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHcCccccCCCC--
Q psy8787 272 GGLGLTPSGNIGLNGALFESVHGTAPDIAGKDLANPTALLLSAVMMLRHLDLNTHADVIQKAALDTIKEGKYRTGDLG-- 349 (364)
Q Consensus 272 G~lGl~psa~ig~~~~~fEp~HGsapdiaGk~~aNP~a~ils~ammL~~lg~~~~a~~i~~Av~~~~~~g~~~T~Dlg-- 349 (364)
||+||+||+|+|++++||||+|||||||||||+|||+|||||++|||+|||++++|++|++||.+|+++|. +|+|||
T Consensus 239 GslGlapSaNiG~~~amFEpvHGSAPdIAGk~iANP~a~IlSaamML~hLG~~~~A~~I~~AV~~vl~~G~-~T~Dl~~~ 317 (473)
T TIGR02924 239 GSVGLAGSANIGEEYAMFEAVHGSAPDIAGQNIANPSGLLNAAIQMLVHIGQSDIAQLIYNAWLKTLEDGV-HTADIYNE 317 (473)
T ss_pred CCcCcccceecCCCcceeecCCCchhhhCCCCccChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcCC-cCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999995 899994
Q ss_pred ----CCCCHHHHHHHHHhC
Q psy8787 350 ----GKAKCSEFTNEICSK 364 (364)
Q Consensus 350 ----g~~~T~e~~~av~~~ 364 (364)
|++||+||+|+|+++
T Consensus 318 ~~~gg~~sT~e~~daVi~~ 336 (473)
T TIGR02924 318 KTSKQKVGTKEFAEAVTAN 336 (473)
T ss_pred ccCCCCcCHHHHHHHHHHH
Confidence 689999999999874
No 12
>PLN02329 3-isopropylmalate dehydrogenase
Probab=100.00 E-value=6.7e-106 Score=795.46 Aligned_cols=351 Identities=28% Similarity=0.461 Sum_probs=310.4
Q ss_pred cccccccccccccceeEeeccchhhhcccccCCCCCCCCccccCCCCcCHHHHHHHHHHHHhhc----CCCceeEEEEee
Q psy8787 7 LSLLKLPLQCNTVETISYLTLSELISAQYINTPSISQWSWRGLKVQGLGEFNLYANVRPCRSLE----GYPTLYDDVDVV 82 (364)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~i~GDGIGp~EV~a~~r~Vl~a~----g~~i~~~~vdig 82 (364)
+.+.|+|.--++++.--.......+.+ +-..+++..++|.+|||||||| ||++++++|++++ +++++|.++++|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~IavipGDGIGP-EV~~aa~~Vl~a~~~~~~~~~~~~~~~~G 88 (409)
T PLN02329 11 LNSIKIVPGRYSSLTDHQFRAPYRIRC-AAASPGKKRYNIALLPGDGIGP-EVISVAKNVLQKAGSLEGLEFDFQEMPVG 88 (409)
T ss_pred hhhhccccccccCCCcccccchhhhcc-cccccccceEEEEEECCCcccH-HHHHHHHHHHHHHHhhcCCceEEEEEcCC
Confidence 344556555554443222112222322 2234433568899999999999 9999999999975 578999999999
Q ss_pred eeeecCCCCccccchhHHHHhhhcCEEEEcccc-----c---------c---hhhhcccceeeeeeeccCCCCC--CC--
Q psy8787 83 TIRENTEGEYSGIEHEIVDGVCNSNYATKWFSE-----R---------G---ASVEFNLYANVRPCRSLEGYPT--LY-- 141 (364)
Q Consensus 83 ~~re~~~G~Y~~lp~etl~~ik~~daiLkGav~-----~---------g---LR~~ldlyanvRP~~~~pg~~~--~~-- 141 (364)
...++++|+ .+|+++++.|+++|++||||++ . + ||+.||||+|+||||++||+++ |+
T Consensus 89 ~~~~~~~G~--~lP~~tl~~~~~~DaiL~Gavg~p~~~~~~~~~~~e~~ll~LRk~ldLyaNvRPvr~~pg~~~~splk~ 166 (409)
T PLN02329 89 GAALDLVGV--PLPEETFTAAKQSDAILLGAIGGYKWDKNEKHLRPEMALFYLRRDLKVFANLRPATVLPQLVDASTLKK 166 (409)
T ss_pred HHHHHHhCC--cCCHHHHHHHHHCCEEEECcccCCCCCCCcccccccccHHHHHHHcCCeEeeeeeeccCCCCCcCcccc
Confidence 988889997 8999999999999999999994 0 1 9999999999999999999875 43
Q ss_pred ---CCccEEEEccCCCccccCceeee-----eCCEEEEEEEecHHHHHHHHHHHHHHHHhCCCCceEEEEeCcccccccH
Q psy8787 142 ---DDVDVVTIRENTEGEYSGIEHEI-----VDGVVQSIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDG 213 (364)
Q Consensus 142 ---~~iD~vIvREnteg~Y~g~~~~~-----~~~~a~~~~~~t~~~~eriar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~ 213 (364)
+++|+|||||||||+|+|.++.. ..++++++++|||+++|||+|+||+||++|+ ++||+|||+|||+ +++
T Consensus 167 ~~~~~iD~vIVREnTEG~Y~G~~~~~~~~~~~~~~a~~~~~iTr~~~eRI~r~AFe~A~~r~-~kVT~v~KaNVl~-t~~ 244 (409)
T PLN02329 167 EVAEGVDMMIVRELTGGIYFGEPRGITINENGEEVGVSTEIYAAHEIDRIARVAFETARKRR-GKLCSVDKANVLD-ASI 244 (409)
T ss_pred cccCCceEEEEEECCCCeecCCCcceecccCCceeEEEeEEecHHHHHHHHHHHHHHHHHcC-CeEEEEECCCCcc-chH
Confidence 68999999999999999987432 2357899999999999999999999999986 5999999999999 899
Q ss_pred HHHHHHHHHhhcCCCeeEeeEeHHHHHHHHhcCCCCccEEEeCCCcchhhhhhhhhccCCCCcccccccCCCc-eeEeec
Q psy8787 214 LFLRCCRDAAEKFPEVKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNG-ALFESV 292 (364)
Q Consensus 214 lf~~~~~~va~~yp~i~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~GDIlSD~aa~l~G~lGl~psa~ig~~~-~~fEp~ 292 (364)
||+++|++++++||+|++++++||++|||||++|++||||||+|||||||||+||+|+|||||+||+|+|+++ +||||+
T Consensus 245 lf~~~~~evA~eyPdV~~~~~~VDa~a~~LV~~P~~FDVIVt~NLfGDILSDlaa~l~GglGlaPSanig~~~~a~FEpv 324 (409)
T PLN02329 245 LWRKRVTALASEYPDVELSHMYVDNAAMQLIRDPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGESGPGLFEPI 324 (409)
T ss_pred HHHHHHHHHHhhCCCcccchhHHHHHHHHHhcCchhCCEEEEcCcccccccHHHHHhcCCcccCceeecCCCCceeeecc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999874 999999
Q ss_pred cCCCCCccCCCCCChhHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHHcCccccCCC---CCC-CCHHHHHHHHHhC
Q psy8787 293 HGTAPDIAGKDLANPTALLLSAVMMLRH-LDLNTHADVIQKAALDTIKEGKYRTGDL---GGK-AKCSEFTNEICSK 364 (364)
Q Consensus 293 HGsapdiaGk~~aNP~a~ils~ammL~~-lg~~~~a~~i~~Av~~~~~~g~~~T~Dl---gg~-~~T~e~~~av~~~ 364 (364)
|||||||||||+|||+|+|||++||||| ||++++|++|++||.+++++|. +|+|| ||+ +||+||+|+|+++
T Consensus 325 HGSAPdIAGk~iANP~A~ILS~amML~~~Lg~~~~A~~I~~AV~~vl~~g~-~T~Dl~~~Gg~~~~T~e~~daIi~~ 400 (409)
T PLN02329 325 HGSAPDIAGQDKANPLATILSAAMLLKYGLGEEKAAKRIEDAVVDALNKGF-RTGDIYSPGNKLVGCKEMGEEVLKS 400 (409)
T ss_pred CCCchhhcCCcccChHHHHHHHHHHHhhhCCCHHHHHHHHHHHHHHHHcCC-cCcccccCCCCccCHHHHHHHHHHH
Confidence 9999999999999999999999999999 9999999999999999999995 89999 776 8999999999863
No 13
>PRK03437 3-isopropylmalate dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-105 Score=783.26 Aligned_cols=314 Identities=30% Similarity=0.478 Sum_probs=297.2
Q ss_pred CCCCccccCCCCcCHHHHHHHHHHHHhhc---CCCceeEEEEeeeeeecCCCCccccchhHHHHhhhcCEEEEcccc---
Q psy8787 42 SQWSWRGLKVQGLGEFNLYANVRPCRSLE---GYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVCNSNYATKWFSE--- 115 (364)
Q Consensus 42 ~~~~i~~i~GDGIGp~EV~a~~r~Vl~a~---g~~i~~~~vdig~~re~~~G~Y~~lp~etl~~ik~~daiLkGav~--- 115 (364)
++++|.+|||||||| ||++++++|++++ +++++|.++++|...++++|+ .+|+++++.|+++|++||||++
T Consensus 3 k~~~I~vipGDGIGp-Ev~~~a~~Vl~a~~~~~~~~~~~~~~~G~~~~~~~G~--~lp~~tl~~~~~~da~L~Gavg~p~ 79 (344)
T PRK03437 3 KTMKLAVIPGDGIGP-EVVAEALKVLDAVAAGGPGVETTEYDLGARRYLRTGE--TLPDSVLAELRQHDAILLGAIGDPS 79 (344)
T ss_pred ceEEEEEECCCCccH-HHHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHCC--cCCHHHHHHHHHCCEEEEeecCCCC
Confidence 567899999999999 9999999999977 889999999999988889997 8999999999999999999983
Q ss_pred -------cc----hhhhcccceeeeeeeccCCCCCCC---CCccEEEEccCCCccccCceeeee----CCEEEEEEEecH
Q psy8787 116 -------RG----ASVEFNLYANVRPCRSLEGYPTLY---DDVDVVTIRENTEGEYSGIEHEIV----DGVVQSIKLITE 177 (364)
Q Consensus 116 -------~g----LR~~ldlyanvRP~~~~pg~~~~~---~~iD~vIvREnteg~Y~g~~~~~~----~~~a~~~~~~t~ 177 (364)
++ |||.||||+|+||||++||+++|+ +++|+|||||||||+|+|.++... .+++++++++||
T Consensus 80 ~~~~~~~~~~~~~LRk~ldLyaNvRP~r~~pg~~sp~k~~~~iD~vivREnteG~Y~g~~~~~~~~~~~~~a~~~~~~Tr 159 (344)
T PRK03437 80 VPSGVLERGLLLKLRFALDHYVNLRPSKLYPGVTSPLAGPGDIDFVVVREGTEGPYTGNGGALRVGTPHEVATEVSVNTA 159 (344)
T ss_pred CCCCCcccchHHHHHHHcCCeEEEEEeecCCCCCCcCCCCCCCCEEEEEECCCccccCCcccccCCCcceeEEEEEEecH
Confidence 11 999999999999999999999887 799999999999999999875432 346789999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhhcCCCeeEeeEeHHHHHHHHhcCCCCccEEEeCC
Q psy8787 178 EASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLDTVCLNMVQDPTQYDVLVMPN 257 (364)
Q Consensus 178 ~~~eriar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp~i~~~~~~vD~~~~~lv~~P~~fdVivt~N 257 (364)
++++||+|+||+||++|++++||++||+|||+.|++||+++|+|++++||+|++++++||++|||||++|++||||||+|
T Consensus 160 ~~~~RIa~~AF~~A~~r~~k~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~vDa~~~~Lv~~P~~fDVIVt~N 239 (344)
T PRK03437 160 FGVERVVRDAFERAQKRPRKHLTLVHKTNVLTFAGDLWQRTVDEVAAEYPDVTVDYQHVDAATIFMVTDPSRFDVIVTDN 239 (344)
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEEEECCccccccchHHHHHHHHHHhhCCCceEeehhHHHHHHHHhcCcccCcEEEEcc
Confidence 99999999999999999888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhhhhhhhccCCCCcccccccCCC-c--eeEeeccCCCCCccCCCCCChhHHHHHHHHHHHhcCcHHHHHHHHHHH
Q psy8787 258 LYGDILSDMCAGLVGGLGLTPSGNIGLN-G--ALFESVHGTAPDIAGKDLANPTALLLSAVMMLRHLDLNTHADVIQKAA 334 (364)
Q Consensus 258 l~GDIlSD~aa~l~G~lGl~psa~ig~~-~--~~fEp~HGsapdiaGk~~aNP~a~ils~ammL~~lg~~~~a~~i~~Av 334 (364)
||||||||++++++||+|++||+|+|++ . +||||+|||||||||||||||+|||||++|||||||++++|++|++||
T Consensus 240 lfGDILSDlaa~l~GglGl~pSanig~~g~~~a~FEp~HGSAPdiAGk~iANP~a~IlS~amML~~lg~~~~a~~I~~Av 319 (344)
T PRK03437 240 LFGDIITDLAAAVTGGIGLAASGNINPTGTNPSMFEPVHGSAPDIAGQGIADPTAAILSVALLLDHLGEEDAAARIEAAV 319 (344)
T ss_pred cchhhhhHHHHHhcCCccccceeeecCCCCcceeEecCCCCchhhcCCCccChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999999999999965 3 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCccccCCCCCCCCHHHHHHHHHhC
Q psy8787 335 LDTIKEGKYRTGDLGGKAKCSEFTNEICSK 364 (364)
Q Consensus 335 ~~~~~~g~~~T~Dlgg~~~T~e~~~av~~~ 364 (364)
++++++| +||++||+||+|+|+++
T Consensus 320 ~~~l~~g------~gg~~~T~e~~~ai~~~ 343 (344)
T PRK03437 320 EADLAER------GKMGRSTAEVGDRIAAR 343 (344)
T ss_pred HHHHHhc------CCCCcCHHHHHHHHHhh
Confidence 9999998 48999999999999874
No 14
>TIGR00169 leuB 3-isopropylmalate dehydrogenase. This model will not find all isopropylmalate dehydrogenases; the enzyme from Sulfolobus sp. strain 7 is more similar to mitochondrial NAD-dependent isocitrate dehydrogenases than to other known isopropylmalate dehydrogenases and was omitted to improve the specificity of the model. It scores below the cutoff and below some enzymes known not to be isopropylmalate dehydrogenase.
Probab=100.00 E-value=6.2e-105 Score=780.38 Aligned_cols=314 Identities=33% Similarity=0.506 Sum_probs=295.5
Q ss_pred CccccCCCCcCHHHHHHHHHHHHhhc----CCCceeEEEEeeeeeecCCCCccccchhHHHHhhhcCEEEEcccc-----
Q psy8787 45 SWRGLKVQGLGEFNLYANVRPCRSLE----GYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVCNSNYATKWFSE----- 115 (364)
Q Consensus 45 ~i~~i~GDGIGp~EV~a~~r~Vl~a~----g~~i~~~~vdig~~re~~~G~Y~~lp~etl~~ik~~daiLkGav~----- 115 (364)
+|.+|||||||| ||++++++|++++ +++++|.++++|...+.++|. .+|+++++.++++|++||||++
T Consensus 1 ~i~vipGDGIGp-EV~~aa~~vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~--~lp~~tl~~~~~~da~l~G~v~~p~~~ 77 (349)
T TIGR00169 1 KIAVLPGDGIGP-EITAEALKVLKAVAERFGLKFEFEEHLIGGAAIDATGQ--PLPEETLKACKEADAVLLGAVGGPKWD 77 (349)
T ss_pred CEEEECCCCccH-HHHHHHHHHHHHHHhhcCCceEEEEEeCCHHHHHHHCC--CCCHHHHHHHHHCCEEEECcccCCCCC
Confidence 478999999999 9999999999976 689999999999988889996 8999999999999999999994
Q ss_pred -c---------c--hhhhcccceeeeeeeccCCCCC--CC-----CCccEEEEccCCCccccCceeeee----CCEEEEE
Q psy8787 116 -R---------G--ASVEFNLYANVRPCRSLEGYPT--LY-----DDVDVVTIRENTEGEYSGIEHEIV----DGVVQSI 172 (364)
Q Consensus 116 -~---------g--LR~~ldlyanvRP~~~~pg~~~--~~-----~~iD~vIvREnteg~Y~g~~~~~~----~~~a~~~ 172 (364)
. . ||+.||||+|+||||++||+++ |+ +++|+|||||||||+|+|++++.. +++++++
T Consensus 78 ~~~~~~~~~~~~~~LR~~ldlyanvRP~r~~~g~~~~~p~~~~~~~~iD~vivREntEG~Y~g~~~~~~~~~~~~~a~~~ 157 (349)
T TIGR00169 78 NLPRDQRPEQGLLKLRKSLDLFANLRPAKVFPSLEDLSPLKEEIAKGVDFVVVRELTGGIYFGEPKGRFGAGGEGEAWDT 157 (349)
T ss_pred CCCccccchhhHHHHHHHcCCeEEEEEeeccCCCCccCCCcccccCCceEEEEeeccCCeecCCCccccCCCCcceEEEE
Confidence 1 1 8999999999999999999875 43 789999999999999999986432 3688999
Q ss_pred EEecHHHHHHHHHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhhcCCCeeEeeEeHHHHHHHHhcCCCCccE
Q psy8787 173 KLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLDTVCLNMVQDPTQYDV 252 (364)
Q Consensus 173 ~~~t~~~~eriar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp~i~~~~~~vD~~~~~lv~~P~~fdV 252 (364)
+++||++++||+|+||+||++|++ +||+|||+|+|+ ++++|+++|+|++++||+|++++++||++||+||++|++|||
T Consensus 158 ~~~Tr~~~eRI~r~AF~~A~~r~~-~Vt~v~KaNvlk-t~glf~~~~~eva~~yP~I~~~~~~vDa~~~~Lv~~P~~fDV 235 (349)
T TIGR00169 158 EVYTKPEIERIARVAFEMARKRRK-KVTSVDKANVLE-SSRLWRKTVEEIAKEYPDVELEHQYIDNAAMQLVKSPTQFDV 235 (349)
T ss_pred EEeeHHHHHHHHHHHHHHHHHcCC-cEEEEECCcccc-hhHHHHHHHHHHHhhCCCceEEeeeHHHHHHHHHhCccCceE
Confidence 999999999999999999999964 999999999999 899999999999999999999999999999999999999999
Q ss_pred EEeCCCcchhhhhhhhhccCCCCcccccccCCC-ceeEeeccCCCCCccCCCCCChhHHHHHHHHHHHh-cCcHHHHHHH
Q psy8787 253 LVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLN-GALFESVHGTAPDIAGKDLANPTALLLSAVMMLRH-LDLNTHADVI 330 (364)
Q Consensus 253 ivt~Nl~GDIlSD~aa~l~G~lGl~psa~ig~~-~~~fEp~HGsapdiaGk~~aNP~a~ils~ammL~~-lg~~~~a~~i 330 (364)
|||+|||||||||++++++||+|++||+|+|++ ++||||+|||||||||||+|||+|+|||++|||+| ||++++|++|
T Consensus 236 iv~~NlfGDILSDlaa~l~GglGlapSanig~~~~a~FEp~HGSAPdiAGk~iANP~a~IlS~amML~~~lg~~~~a~~i 315 (349)
T TIGR00169 236 VVTGNIFGDILSDEASVIPGSLGMLPSASLGSDGFGLFEPVHGSAPDIAGKGIANPIAQILSAAMMLRYSFNLEEAADAI 315 (349)
T ss_pred EEEcCcccchhhHHHHHhcCCCCCCceEEECCCCCEEEECCCCChhHhcCCCCCChHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 999999999999999999999999999999954 79999999999999999999999999999999999 8999999999
Q ss_pred HHHHHHHHHcCccccCCCCCCCCHHHHHHHHHhC
Q psy8787 331 QKAALDTIKEGKYRTGDLGGKAKCSEFTNEICSK 364 (364)
Q Consensus 331 ~~Av~~~~~~g~~~T~Dlgg~~~T~e~~~av~~~ 364 (364)
++||.+++++|. +|+||||++||+||+++|++.
T Consensus 316 ~~Av~~~l~~g~-~T~DlgG~~~t~e~t~av~~~ 348 (349)
T TIGR00169 316 EAAVKKVLAEGY-RTPDLGSSATTEVGTAEMGEE 348 (349)
T ss_pred HHHHHHHHHcCC-CccccCCCcchHHHHHHHHhc
Confidence 999999999995 899999999999999999863
No 15
>PRK07362 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=1.6e-103 Score=780.15 Aligned_cols=337 Identities=32% Similarity=0.462 Sum_probs=303.8
Q ss_pred cccceeEeeccchhhhcccccCCCCCCCCccccCCCCcCHHHHHHHHHHHHhhc---C----CCceeEEEEeeeeeecCC
Q psy8787 17 NTVETISYLTLSELISAQYINTPSISQWSWRGLKVQGLGEFNLYANVRPCRSLE---G----YPTLYDDVDVVTIRENTE 89 (364)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~i~GDGIGp~EV~a~~r~Vl~a~---g----~~i~~~~vdig~~re~~~ 89 (364)
.++++|++.+.... -| +.+.|.+|||||||| ||++++++||+++ + .+++|.++++|...++++
T Consensus 11 ~~~~~i~~~~~~~~-------~p--~~~~I~vIpGDGIGp-EI~~aa~kVL~a~~~~~~~~~~~i~~~~~~~G~~a~~~~ 80 (474)
T PRK07362 11 STGSKITFKNGKPV-------VP--DNPIIPFIRGDGTGV-DIWPATQKVLDAAVAKAYGGERKINWFKVYAGDEACDLY 80 (474)
T ss_pred cccceeeccCCccc-------CC--CCcEEEEeCCCcccH-HHHHHHHHHHHHHHHhccCCCCCeEEEEEccCHHHHHHh
Confidence 34588877443221 23 244599999999999 9999999999964 1 489999999899888899
Q ss_pred CCccccchhHHHHhhhcCEEEEcccc----cc-------hhhhcccceeeeeeeccCCCCCCC---CCccEEEEccCCCc
Q psy8787 90 GEYSGIEHEIVDGVCNSNYATKWFSE----RG-------ASVEFNLYANVRPCRSLEGYPTLY---DDVDVVTIRENTEG 155 (364)
Q Consensus 90 G~Y~~lp~etl~~ik~~daiLkGav~----~g-------LR~~ldlyanvRP~~~~pg~~~~~---~~iD~vIvREnteg 155 (364)
|+|..+|++++++|+++|++||||++ .+ ||+.||||+|+||||++||+++|+ .++|+|||||||||
T Consensus 81 G~~~~lP~etle~i~~~da~L~Gpi~tP~~~g~~s~~l~LRk~ldLyaNvRPvr~~pgl~sp~k~~~~iD~vIvRENTEG 160 (474)
T PRK07362 81 GTYQYLPEDTLEAIREYGVAIKGPLTTPIGGGIRSLNVALRQIFDLYSCVRPCRYYAGTPSPHKNPEKLDVIVYRENTED 160 (474)
T ss_pred CCCCCCCHHHHHHHHHCCEEEECcccCCCCcCccchHHHHHHHcCCceeeeEeeccCCCCCcccCCCCCCEEEEEECCCc
Confidence 97657999999999999999999994 11 999999999999999999999987 68999999999999
Q ss_pred cccCceeee----------------------------eCCEEEEEEEecHHHHHHHHHHHHHHHHhC--CCCceEEEEeC
Q psy8787 156 EYSGIEHEI----------------------------VDGVVQSIKLITEEASSRVAEFAFEYAKTN--NRSKVTAVHKA 205 (364)
Q Consensus 156 ~Y~g~~~~~----------------------------~~~~a~~~~~~t~~~~eriar~Af~~A~~~--~~~~Vt~v~Ka 205 (364)
+|+|++++. ..+.+.+++++||++++||+|+||+||++| ++++||+|||+
T Consensus 161 lY~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~k~iTr~g~eRI~r~AFe~A~~r~~~rkkVT~VhKa 240 (474)
T PRK07362 161 IYMGIEWEAGDEIGDKLIKHLNEEVIPASPELGKRQIPLGSGIGIKPVSKTGSQRHIRRAIEHALRLPGDKRHVTLVHKG 240 (474)
T ss_pred eecccccccccccchhcccccccccccccccccccccccceeeeeeeccHHHHHHHHHHHHHHHHhcCCCCCeEEEEECC
Confidence 999998531 123567999999999999999999999998 46889999999
Q ss_pred cccccccHHHHHHHHHHhh-c-------------------CCC-------------------------------------
Q psy8787 206 NIMRMSDGLFLRCCRDAAE-K-------------------FPE------------------------------------- 228 (364)
Q Consensus 206 Nv~~~~~~lf~~~~~~va~-~-------------------yp~------------------------------------- 228 (364)
|||++|+|+|++|+.|+|+ + ||+
T Consensus 241 NVlk~t~glf~~~~~evA~~~~~~~~v~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (474)
T PRK07362 241 NIMKYTEGAFRDWGYELATTEFRDECVTERESWILSNKEKNPNISIEDNARMIEPGYDSLTPEKKAAICAEVKEVLDSIW 320 (474)
T ss_pred cccccchhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccccCccccccccccccccccccccccccccccccccccccchh
Confidence 9999999999998889986 3 444
Q ss_pred -----------eeEeeEeHHHHHHHHhcCCCCccEEEeCCCcchhhhhhhhhccCCCCcccccccCCCceeEeeccCCCC
Q psy8787 229 -----------VKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGTAP 297 (364)
Q Consensus 229 -----------i~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~GDIlSD~aa~l~G~lGl~psa~ig~~~~~fEp~HGsap 297 (364)
|++++++||++|||||++|++||||||+|||||||||++|+|+|||||+||+|+|++.+||||+|||||
T Consensus 321 ~~~~~~~~~~~v~~~~~~vDa~a~~lv~~P~~FDVIVt~NLfGDILSDlaA~lvGglGlaPSANiG~~~a~FEpvHGSAP 400 (474)
T PRK07362 321 SSHGNGKWKEKVLVDDRIADSIFQQIQTRPQEYSILATLNLNGDYISDAAAAIVGGLGMAPGANIGDNAAIFEATHGTAP 400 (474)
T ss_pred hccccccCCCcceeehHHHHHHHHHHHhChhhCCEEEEccccchhhhHHHHHhcCCccccceeeeCCCceeeecCCCCch
Confidence 788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCChhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHcCccccCCCC-------CCCCHHHHHHHHHhC
Q psy8787 298 DIAGKDLANPTALLLSAVMMLRHLDLNTHADVIQKAALDTIKEGKYRTGDLG-------GKAKCSEFTNEICSK 364 (364)
Q Consensus 298 diaGk~~aNP~a~ils~ammL~~lg~~~~a~~i~~Av~~~~~~g~~~T~Dlg-------g~~~T~e~~~av~~~ 364 (364)
||||||+|||+|+|||++|||||||++++|++|++||.+++++|. +|+||| |++||+||+++|+++
T Consensus 401 dIAGk~iANP~A~ILS~aMML~~LG~~~~A~~I~~AV~~vl~~g~-~T~Dlg~~~~~~~~~~sT~E~~~aIi~~ 473 (474)
T PRK07362 401 KHAGLDRINPGSVILSGVMMLEYLGWQEAADLITKGLSAAIANKQ-VTYDLARLMEPPVDPLSCSEFAEAIISH 473 (474)
T ss_pred hhcCCCCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcCC-cccCCCCccccCCCCcCHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999995 799999 578999999999974
No 16
>PRK06451 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=1.5e-103 Score=782.04 Aligned_cols=318 Identities=31% Similarity=0.505 Sum_probs=296.9
Q ss_pred CCCccccCCCCcCHHHHHHHHHHHHhhc---C----CCceeEEEEeeeeeecCCCCccccchhHHHHhhhcCEEEEcccc
Q psy8787 43 QWSWRGLKVQGLGEFNLYANVRPCRSLE---G----YPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVCNSNYATKWFSE 115 (364)
Q Consensus 43 ~~~i~~i~GDGIGp~EV~a~~r~Vl~a~---g----~~i~~~~vdig~~re~~~G~Y~~lp~etl~~ik~~daiLkGav~ 115 (364)
++.|.+|||||||| ||++++++|++++ + ++++|.++++|...++++|+ .+|+++++.|+++|++||||++
T Consensus 23 ~~~I~vipGDGIGp-EV~~aa~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~--~lp~etl~~ik~~daiL~Gavg 99 (412)
T PRK06451 23 KPIILYVEGDGIGP-EITHAAMKVINKAVEKAYGSDREIKWVEVLAGDKAEKLTGN--RFPKESEELIEKYRVLLKGPLE 99 (412)
T ss_pred CcEEEEecCCcccH-HHHHHHHHHHHHHHHhccCCCCceEEEEEcCCHHHHHHhCC--cCCHHHHHHHHHCCEEEECccc
Confidence 43499999999999 9999999999964 2 48999999999988889997 8999999999999999999995
Q ss_pred -c---c-------hhhhcccceeeeeeeccCCCCCCC---CCccEEEEccCCCccccCceeee-----------------
Q psy8787 116 -R---G-------ASVEFNLYANVRPCRSLEGYPTLY---DDVDVVTIRENTEGEYSGIEHEI----------------- 164 (364)
Q Consensus 116 -~---g-------LR~~ldlyanvRP~~~~pg~~~~~---~~iD~vIvREnteg~Y~g~~~~~----------------- 164 (364)
. + ||+.||||+|+||||++||+++|+ +++|+|||||||||+|+|.+++.
T Consensus 100 tP~~~~~~s~~l~LRk~ldLyaNvRPvk~~pgl~sp~~~~~~iD~vIvREnTeG~Y~g~~~~~~~~~~~~~~~~~~~~~~ 179 (412)
T PRK06451 100 TPIGKGWKSINVAIRLMLDLYANIRPVKYIPGIESPLKNPEKIDLIIFRENTDDLYRGIEYPYDSEEAKKIRDFLRKELG 179 (412)
T ss_pred CCCCcCCcChhHHHHHHcCCeEeeceeecCCCCCCcccCcCCccEEEEEeccCCeeeccccccccccccccccccccccc
Confidence 1 1 999999999999999999999887 78999999999999999998421
Q ss_pred ---eCCEEEEEEEecHHHHHHHHHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhh-cCCC------------
Q psy8787 165 ---VDGVVQSIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAE-KFPE------------ 228 (364)
Q Consensus 165 ---~~~~a~~~~~~t~~~~eriar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~-~yp~------------ 228 (364)
..+.+.+++++|+.+++||+|+||+||++|++++||+|||+|||+.||++|+++|+|+++ +||+
T Consensus 180 ~~~~~~~a~~~~~~t~~~~eRIar~AF~~A~~r~~kkVt~v~KaNVlk~t~glf~~~~~eva~~eypd~~~~~~~~~~~y 259 (412)
T PRK06451 180 VEVEDDTGIGIKLISKFKTQRIARMAIKYAIDHKRKKVTIMHKGNVMKYTEGAFREWAYEVALKEFRDYVVTEEEVTKNY 259 (412)
T ss_pred cccccceecceeeeeHHHHHHHHHHHHHHHHhcCCCcEEEEECCCccccchhhHHHHHHHHHHHhCCcccccccchhhcc
Confidence 123567999999999999999999999999888999999999999999999999999997 8995
Q ss_pred --------eeEeeEeHHHHHHHHhcCCCCccEEEeCCCcchhhhhhhhhccCCCCcccccccCCCceeEeeccCCCCCcc
Q psy8787 229 --------VKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGTAPDIA 300 (364)
Q Consensus 229 --------i~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~GDIlSD~aa~l~G~lGl~psa~ig~~~~~fEp~HGsapdia 300 (364)
|+++|++||++|||||++|++||||||+|||||||||+||+++||+||+||+|+|++++||||+||||||||
T Consensus 260 ~~~~~~~~I~~~~~~vDa~~~~Lv~~P~~FDVivt~NlfGDILSDlaa~l~GglGl~pSanig~~~alFEpvHGSAPdiA 339 (412)
T PRK06451 260 NGVPPSGKVIINDRIADNMFQQIIIRPDEYDIILAPNVNGDYISDAAGALVGNIGMLGGANIGDTGGMFEAIHGTAPKYA 339 (412)
T ss_pred ccccccCceEEEeeeHHHHHHHHhcCcccCcEEEEcCcccchhhHHHHHhcCchhhcceeeeCCCCceeECCCCCccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHcCccccCCC----CCC-CCHHHHHHHHHhC
Q psy8787 301 GKDLANPTALLLSAVMMLRHLDLNTHADVIQKAALDTIKEGKYRTGDL----GGK-AKCSEFTNEICSK 364 (364)
Q Consensus 301 Gk~~aNP~a~ils~ammL~~lg~~~~a~~i~~Av~~~~~~g~~~T~Dl----gg~-~~T~e~~~av~~~ 364 (364)
|||+|||+|+|||++|||||||++++|++|++||.+++++|. +|+|| ||+ ++|+||+|+|+++
T Consensus 340 Gk~iANP~a~IlS~amML~~lg~~~~A~~I~~Av~~vl~~G~-~T~Dl~~~~gg~~~~T~e~~daI~~~ 407 (412)
T PRK06451 340 GKNVANPTGIIKGGELMLRFMGWDKAADLIDKAIMESIKQKK-VTQDLARFMGVRALSTTEYTDELISI 407 (412)
T ss_pred CCCCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcCC-cCccccccCCCCccCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999996 79999 555 7999999999874
No 17
>PRK00772 3-isopropylmalate dehydrogenase; Provisional
Probab=100.00 E-value=4.3e-103 Score=768.96 Aligned_cols=315 Identities=33% Similarity=0.528 Sum_probs=297.4
Q ss_pred CCccccCCCCcCHHHHHHHHHHHHhhc----CCCceeEEEEeeeeeecCCCCccccchhHHHHhhhcCEEEEcccc-c--
Q psy8787 44 WSWRGLKVQGLGEFNLYANVRPCRSLE----GYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVCNSNYATKWFSE-R-- 116 (364)
Q Consensus 44 ~~i~~i~GDGIGp~EV~a~~r~Vl~a~----g~~i~~~~vdig~~re~~~G~Y~~lp~etl~~ik~~daiLkGav~-~-- 116 (364)
++|.+|||||||| ||++++++|++++ +++++|.++++|...+.++|+ .+|+++++.++++|++||||++ .
T Consensus 3 ~~I~vipGDGIGp-EV~~aa~~vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~--~lp~~tl~~~~~~da~L~Gav~~p~~ 79 (358)
T PRK00772 3 YKIAVLPGDGIGP-EVMAEAVKVLDAVAEKFGFDFEFEEALVGGAAIDAHGV--PLPEETLEACRAADAVLLGAVGGPKW 79 (358)
T ss_pred eEEEEECCCcccH-HHHHHHHHHHHHHHhhcCCceEEEEecCcHHHHHHHCC--CCCHHHHHHHHHCCEEEECccCCCCC
Confidence 6799999999999 9999999999976 689999999999988889996 8999999999999999999994 1
Q ss_pred --------c------hhhhcccceeeeeeeccCCCCC--CC-----CCccEEEEccCCCccccCceeeee----CCEEEE
Q psy8787 117 --------G------ASVEFNLYANVRPCRSLEGYPT--LY-----DDVDVVTIRENTEGEYSGIEHEIV----DGVVQS 171 (364)
Q Consensus 117 --------g------LR~~ldlyanvRP~~~~pg~~~--~~-----~~iD~vIvREnteg~Y~g~~~~~~----~~~a~~ 171 (364)
+ ||+.||||+|+||||++||+++ |+ +++|+|||||||||+|+|.+++.. .+++.+
T Consensus 80 ~~~~~~~~~~~~~~~LR~~ldlyanvRP~r~~pg~~~~~plk~~~~~~iD~vivREntEG~Y~g~~~~~~~~~~~~~a~~ 159 (358)
T PRK00772 80 DNLPPDVRPERGLLALRKELGLFANLRPAKLYPGLADASPLKPEIVAGLDILIVRELTGGIYFGEPRGREGLGGEERAFD 159 (358)
T ss_pred CCCCccCCChhhHHHHHHHcCCeEEEeEeecCCCCCCcCCCcccccCCccEEEEecccCCeecCCcccccCCCCceeEEE
Confidence 1 9999999999999999999986 54 389999999999999999986543 347889
Q ss_pred EEEecHHHHHHHHHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhhcCCCeeEeeEeHHHHHHHHhcCCCCcc
Q psy8787 172 IKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLDTVCLNMVQDPTQYD 251 (364)
Q Consensus 172 ~~~~t~~~~eriar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp~i~~~~~~vD~~~~~lv~~P~~fd 251 (364)
++++||++++||+|+||+||++|+ ++||++||+|+|+ ++++|+++|+|++++||+|++++++||++||+||++|++||
T Consensus 160 ~~~iTr~~~~Ri~r~Af~~A~~r~-~~Vt~v~KaNvl~-~~glf~~~~~eva~eyp~i~~~~~~vDa~~~~lv~~P~~fD 237 (358)
T PRK00772 160 TMVYTREEIERIARVAFELARKRR-KKVTSVDKANVLE-SSRLWREVVTEVAKEYPDVELSHMYVDNAAMQLVRNPKQFD 237 (358)
T ss_pred EEEeeHHHHHHHHHHHHHHHHHcC-CcEEEEECccccc-cchHHHHHHHHHHhHCCCceEEEEeHHHHHHHHhhCcccCe
Confidence 999999999999999999999985 5999999999999 88999999999999999999999999999999999999999
Q ss_pred EEEeCCCcchhhhhhhhhccCCCCcccccccCCC-ceeEeeccCCCCCccCCCCCChhHHHHHHHHHHHh-cCcHHHHHH
Q psy8787 252 VLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLN-GALFESVHGTAPDIAGKDLANPTALLLSAVMMLRH-LDLNTHADV 329 (364)
Q Consensus 252 Vivt~Nl~GDIlSD~aa~l~G~lGl~psa~ig~~-~~~fEp~HGsapdiaGk~~aNP~a~ils~ammL~~-lg~~~~a~~ 329 (364)
||||+|||||||||++|+++||+||+||+|+|++ .+||||+|||||||||||+|||+|+|||++|||+| ||++++|++
T Consensus 238 Viv~~NlfGDIlSDlaa~l~GglGl~psanig~~~~a~FEp~HGSApdiAGk~~aNP~a~Ils~ammL~~~lg~~~~a~~ 317 (358)
T PRK00772 238 VIVTENLFGDILSDEAAMLTGSLGMLPSASLGESGPGLYEPIHGSAPDIAGKGIANPIATILSAAMMLRYSLGLEEAADA 317 (358)
T ss_pred EEeecCcccccccHHHHHhcCCCCCCcceEeCCCCceeeecCCCchhhhcCCCCcCCHHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999999999999999999999977 49999999999999999999999999999999999 999999999
Q ss_pred HHHHHHHHHHcCccccCCC---CCCCCHHHHHHHHHhC
Q psy8787 330 IQKAALDTIKEGKYRTGDL---GGKAKCSEFTNEICSK 364 (364)
Q Consensus 330 i~~Av~~~~~~g~~~T~Dl---gg~~~T~e~~~av~~~ 364 (364)
|++||.+++++|+ +|+|| ||++||+||+|+|+++
T Consensus 318 i~~Av~~~l~~g~-~T~Dl~~~gg~~~T~e~~~av~~~ 354 (358)
T PRK00772 318 IEAAVEKVLAQGY-RTADIAEGGGKVSTSEMGDAILAA 354 (358)
T ss_pred HHHHHHHHHHcCC-cCcccccCCCCcCHHHHHHHHHHH
Confidence 9999999999995 89999 8999999999999874
No 18
>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases. This family is closely related to both the LeuB genes found in TIGR00169 and the mitochondrial eukaryotic isocitrate dehydratases found in TIGR00175. All of these are included within the broader subfamily model, pfam00180.
Probab=100.00 E-value=1.1e-102 Score=757.19 Aligned_cols=310 Identities=41% Similarity=0.649 Sum_probs=297.2
Q ss_pred ccccCCCCcCHHHHHHHHHHHHhhcCCCceeEEEEeeeeeecCCCCccccchhHHHHhhhcCEEEEcccc----cc----
Q psy8787 46 WRGLKVQGLGEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVCNSNYATKWFSE----RG---- 117 (364)
Q Consensus 46 i~~i~GDGIGp~EV~a~~r~Vl~a~g~~i~~~~vdig~~re~~~G~Y~~lp~etl~~ik~~daiLkGav~----~g---- 117 (364)
|++|||||||| ||++++++|+++.+++++|+++++|...++++|+ .+|++++++|+++|++||||++ .+
T Consensus 1 i~~ipGDGIGp-Ev~~~a~~vl~~~~~~i~~~~~~~G~~~~~~~G~--~lp~~~l~~~~~~da~l~Gavg~p~~~~~~s~ 77 (322)
T TIGR02088 1 VAVIPGDGIGP-EVIEAAIRILNKLGLEIEFIEFEAGDEALKKYGS--ALPEDTLEEIRKADAILFGAVTTPANPGYKSV 77 (322)
T ss_pred CEEeCCCCccH-HHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHhCC--CCCHHHHHHHHHCCEEEECcccCCCCCCccCh
Confidence 56899999999 9999999999998999999999999988889997 8999999999999999999995 11
Q ss_pred ---hhhhcccceeeeeeeccCCCCCCCC-CccEEEEccCCCccccCceeeeeCCEEEEEEEecHHHHHHHHHHHHHHHHh
Q psy8787 118 ---ASVEFNLYANVRPCRSLEGYPTLYD-DVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLITEEASSRVAEFAFEYAKT 193 (364)
Q Consensus 118 ---LR~~ldlyanvRP~~~~pg~~~~~~-~iD~vIvREnteg~Y~g~~~~~~~~~a~~~~~~t~~~~eriar~Af~~A~~ 193 (364)
|||.||||+|+||||++||++++++ ++|+|||||||||+|+|.++. ..+++.+++++||++++||+|+||+||++
T Consensus 78 ~~~LR~~ldlyanvRP~r~~~g~~~~~~~~iD~vivREnteG~Y~g~~~~-~~~~a~~~~~~tr~~~eRi~r~AF~~A~~ 156 (322)
T TIGR02088 78 IVTLRKELDLYANVRPAKSLPGIPDLYPNGKDIVIVRENTEGLYAGFEFG-FSDRAIAIRVITREGSERIARFAFNLAKE 156 (322)
T ss_pred HHHHHHHcCCEEEEEEeeccCCCCCCCCCCCCEEEEEeCcCCeeeccccc-cCcceEEEEEecHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999886 999999999999999999864 35688999999999999999999999999
Q ss_pred CCCCceEEEEeCcccccccHHHHHHHHHHhhcCCCeeEeeEeHHHHHHHHhcCCCCccEEEeCCCcchhhhhhhhhccCC
Q psy8787 194 NNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGG 273 (364)
Q Consensus 194 ~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp~i~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~GDIlSD~aa~l~G~ 273 (364)
|++ |||++||+|||+.|+|||+++|+|++++|| |+++|++||++||+||++|++||||||+|||||||||++|+++||
T Consensus 157 r~~-~Vt~v~KaNvl~~t~glf~~~~~eva~~yp-v~~~~~~vDa~~~~lv~~P~~fdViv~~NlfGDIlSDlaa~l~Gg 234 (322)
T TIGR02088 157 RNR-KVTCVHKANVLKGTDGLFREVCREIAKRYG-VEYRDMYVDSAAMNLVKDPWRFDVIVTTNMFGDILSDLASALAGS 234 (322)
T ss_pred cCC-cEEEEeCCcchhhhHHHHHHHHHHHHHhCC-eeeeeeeHHHHHHHHhhCCcCceEEEecCcccchhhHHHHhhcCC
Confidence 865 699999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred CCcccccccCCCceeEeeccCCCCCccCCCCCChhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHcCccccCCCCCCCC
Q psy8787 274 LGLTPSGNIGLNGALFESVHGTAPDIAGKDLANPTALLLSAVMMLRHLDLNTHADVIQKAALDTIKEGKYRTGDLGGKAK 353 (364)
Q Consensus 274 lGl~psa~ig~~~~~fEp~HGsapdiaGk~~aNP~a~ils~ammL~~lg~~~~a~~i~~Av~~~~~~g~~~T~Dlgg~~~ 353 (364)
+||+||+|+|++++||||.|||||||||||+|||+|||+|++|||+|+|++++|++|++||.+++++|. +|+||||++|
T Consensus 235 lGl~pSanig~~~a~fep~hGsa~diaG~~~aNp~a~i~A~~~~l~~~g~~~~a~~i~~Av~~~l~~g~-~T~DlgG~~~ 313 (322)
T TIGR02088 235 LGLAPSANIGDRKALFEPVHGSAPDIAGKGIANPTAAILSVAMMLDYLGELEKGKLVWEAVEYYIIEGK-KTPDLGGTAK 313 (322)
T ss_pred CCCCceeEEcCCceEEecCCCChhHhCCCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcCC-CCcccCCCcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999996 7999999999
Q ss_pred HHHHHHHHH
Q psy8787 354 CSEFTNEIC 362 (364)
Q Consensus 354 T~e~~~av~ 362 (364)
|+||+|+|+
T Consensus 314 T~e~~~av~ 322 (322)
T TIGR02088 314 TKEVGDEIA 322 (322)
T ss_pred HHHHHHHhC
Confidence 999999985
No 19
>PRK07006 isocitrate dehydrogenase; Reviewed
Probab=100.00 E-value=2.5e-102 Score=774.42 Aligned_cols=318 Identities=33% Similarity=0.490 Sum_probs=294.6
Q ss_pred CccccCCCCcCHHHHHHHHHHHHhhc---C----CCceeEEEEeeeeeecCCCCccccchhHHHHhhhcCEEEEcccc--
Q psy8787 45 SWRGLKVQGLGEFNLYANVRPCRSLE---G----YPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVCNSNYATKWFSE-- 115 (364)
Q Consensus 45 ~i~~i~GDGIGp~EV~a~~r~Vl~a~---g----~~i~~~~vdig~~re~~~G~Y~~lp~etl~~ik~~daiLkGav~-- 115 (364)
.|.+|||||||| ||++++++|++++ + .+++|.++++|...++++|+-+++|+++++.|+++|++||||++
T Consensus 21 ~I~vipGDGIGp-EV~~aa~~vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~~~lp~~tl~~~~~~da~l~G~i~tp 99 (409)
T PRK07006 21 IIPFIEGDGIGP-DITPAMLKVVDAAVEKAYKGERKISWMEIYAGEKATKVYGEDVWLPEETLDLIREYRVAIKGPLTTP 99 (409)
T ss_pred EEEEeCCCcccH-HHHHHHHHHHHHHHHhccCCCCceEEEEEecCHHHHHhhCCcCCCCHHHHHHHHHCCEEEECcccCC
Confidence 399999999999 9999999999964 2 48999999889988889994227999999999999999999983
Q ss_pred --c---c----hhhhcccceeeeeeeccCCCCCCC---CCccEEEEccCCCccccCceeee-------------------
Q psy8787 116 --R---G----ASVEFNLYANVRPCRSLEGYPTLY---DDVDVVTIRENTEGEYSGIEHEI------------------- 164 (364)
Q Consensus 116 --~---g----LR~~ldlyanvRP~~~~pg~~~~~---~~iD~vIvREnteg~Y~g~~~~~------------------- 164 (364)
. . ||+.||||+|+||||++||+++|+ +++|+|||||||||+|+|.++..
T Consensus 100 ~~~~~~s~~l~LR~~ldLyaNvRPvk~~pgl~~plk~~~~iD~vIvREnteG~Y~g~~~~~~~~~~~~~~~~~~~~~~~~ 179 (409)
T PRK07006 100 VGGGIRSLNVALRQELDLYVCLRPVRYFKGVPSPVKRPEDTDMVIFRENSEDIYAGIEWKAGSAEAKKVIKFLQEEMGVK 179 (409)
T ss_pred CCcCccChHHHHHHHcCCEEEEEEEecCCCCCCCCCCCCCCCEEEEEeccCCeecccccccCCcccceeeeccccccCcc
Confidence 1 1 999999999999999999999887 68999999999999999997421
Q ss_pred ----eCCEEEEEEEecHHHHHHHHHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhh-cC-------------
Q psy8787 165 ----VDGVVQSIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAE-KF------------- 226 (364)
Q Consensus 165 ----~~~~a~~~~~~t~~~~eriar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~-~y------------- 226 (364)
..+.+.++++|||++++||+|+||+||++|++|+||++||+|||+.|||+|++|+.|+++ +|
T Consensus 180 ~~~~~~~~a~~~~v~Tr~~~eRi~r~AFe~A~~r~rkkVt~v~KaNVlk~tdglf~~~~~eva~~ey~~~~~~~~~~~~~ 259 (409)
T PRK07006 180 KIRFPETSGIGIKPVSEEGTERLVRAAIEYAIDNDRKSVTLVHKGNIMKFTEGAFKDWGYQLAEEEFGDELIDGGPWDKI 259 (409)
T ss_pred cccccccceEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECCCccccchHHHHHHHHHHHHHHhhhhhhcccccccc
Confidence 113467999999999999999999999999888999999999999999999998889998 78
Q ss_pred ------CCeeEeeEeHHHHHHHHhcCCCCccEEEeCCCcchhhhhhhhhccCCCCcccccccCCCceeEeeccCCCCCcc
Q psy8787 227 ------PEVKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGTAPDIA 300 (364)
Q Consensus 227 ------p~i~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~GDIlSD~aa~l~G~lGl~psa~ig~~~~~fEp~HGsapdia 300 (364)
|+|++++++||++|||||++|++||||||+|||||||||+||+++||+||+||+|+|++++||||+||||||||
T Consensus 260 ~~~~~~p~v~~~~~~vDa~~~~lv~~P~~fDVIvt~NlfGDILSDlaa~l~GglGlapSanig~~~a~FEpvHGSAPdiA 339 (409)
T PRK07006 260 KNPETGKEIIVKDSIADAFLQQILLRPAEYDVIATMNLNGDYISDALAAQVGGIGIAPGANINDGHAIFEATHGTAPKYA 339 (409)
T ss_pred ccccCCCCceeehHHHHHHHHHHhhCcccCcEEEEcCcccchhhHHHHHhcCchhhcccceeCCCceEEECCCCcchhhC
Confidence 89999999999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred CCCCCChhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHcCccccCCC-----CCC-CCHHHHHHHHHhC
Q psy8787 301 GKDLANPTALLLSAVMMLRHLDLNTHADVIQKAALDTIKEGKYRTGDL-----GGK-AKCSEFTNEICSK 364 (364)
Q Consensus 301 Gk~~aNP~a~ils~ammL~~lg~~~~a~~i~~Av~~~~~~g~~~T~Dl-----gg~-~~T~e~~~av~~~ 364 (364)
|||+|||+|+|||++|||||||++++|++|++||.+++++|. +|+|| ||+ ++|+||+|+|+++
T Consensus 340 Gk~iANP~a~IlS~amML~~lG~~~~A~~Ie~Av~~~l~~G~-~T~Dl~~~~~gg~~~~T~e~~daI~~~ 408 (409)
T PRK07006 340 GLDKVNPGSVILSAEMMLRHMGWTEAADLIIKSMEKTIASKT-VTYDFARLMEGATEVKCSEFGDALIKN 408 (409)
T ss_pred CCCCcChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC-ccccccccCCCCcccCHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999995 89999 445 7999999999874
No 20
>TIGR00183 prok_nadp_idh isocitrate dehydrogenase, NADP-dependent, prokaryotic type. Prokaryotic NADP-dependent isocitrate dehydrogenases resemble their NAD-dependent counterparts and 3-isopropylmalate dehydrogenase (an NAD-dependent enzyme) more closely than they resemble eukaryotic NADP-dependent isocitrate dehydrogenases.
Probab=100.00 E-value=1.5e-101 Score=771.70 Aligned_cols=318 Identities=33% Similarity=0.488 Sum_probs=295.3
Q ss_pred CCCccccCCCCcCHHHHHHHHHHHHhhcC-------CCceeEEEEeeeeeecCCC--CccccchhHHHHhhhcCEEEEcc
Q psy8787 43 QWSWRGLKVQGLGEFNLYANVRPCRSLEG-------YPTLYDDVDVVTIRENTEG--EYSGIEHEIVDGVCNSNYATKWF 113 (364)
Q Consensus 43 ~~~i~~i~GDGIGp~EV~a~~r~Vl~a~g-------~~i~~~~vdig~~re~~~G--~Y~~lp~etl~~ik~~daiLkGa 113 (364)
.+.|.+|||||||| ||++++++|++++. .+++|.++++|..+++++| . ++|+++++.|+++|++||||
T Consensus 26 ~~~I~vipGDGIGp-Ev~~~a~~vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~~--~lp~~tl~~~~~~da~l~Ga 102 (416)
T TIGR00183 26 NPIIPYIEGDGIGV-DVTPAAIKVLDAAVEKAYKGEKKIVWFEVYAGEKAYQLYGQDQ--WLPADTLDAIKEYRVAIKGP 102 (416)
T ss_pred CcEEEEeCCCcccH-HHHHHHHHHHHHHHHhccCCCCceEEEEEecCHHHHHHhCCCC--CCCHHHHHHHHHCCEEEECc
Confidence 43499999999999 99999999999652 4899999999998888999 6 79999999999999999999
Q ss_pred cc----c---c----hhhhcccceeeeeeeccCCCCCCC---CCccEEEEccCCCccccCceeee---------------
Q psy8787 114 SE----R---G----ASVEFNLYANVRPCRSLEGYPTLY---DDVDVVTIRENTEGEYSGIEHEI--------------- 164 (364)
Q Consensus 114 v~----~---g----LR~~ldlyanvRP~~~~pg~~~~~---~~iD~vIvREnteg~Y~g~~~~~--------------- 164 (364)
++ . . ||+.||||+|+||||++||+++|+ +++|+|||||||||+|+|.++..
T Consensus 103 ~~tp~~~~~~s~~l~LR~~ldLyaNvRP~k~~pgl~s~~~~~~~vDivIvREnteG~Y~g~~~~~~~~~~~~~~~~~~~~ 182 (416)
T TIGR00183 103 LTTPVGGGIRSLNVALRQELDLYVCLRPVRYYKGVPSPVKHPEKVDMVIFRENTEDIYAGIEWAEGSEEAKKLIRFLQNE 182 (416)
T ss_pred ccCCCCccccCcHHHHHHHcCCEEEEeEeecCCCCCCcCCCCCCCCEEEEEeCCCCcccccccccCcccceeeecccccc
Confidence 84 1 1 999999999999999999999887 69999999999999999987321
Q ss_pred --------eCCEEEEEEEecHHHHHHHHHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhh-cC---------
Q psy8787 165 --------VDGVVQSIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAE-KF--------- 226 (364)
Q Consensus 165 --------~~~~a~~~~~~t~~~~eriar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~-~y--------- 226 (364)
..+++.++++||+++++||+|+||++|++|++++||++||+|||+.|||+|++++.|+++ +|
T Consensus 183 ~g~~~~~~~~~~a~~~~~~tr~~~~Riar~AFe~A~~r~rk~Vt~v~KaNvlk~tdglf~e~~~eva~~ey~~~~~~~~l 262 (416)
T TIGR00183 183 LGVKKIRFPEDSGIGIKPISEEGTKRLVRAAIEYAIENDRKSVTLVHKGNIMKFTEGAFRDWGYELAKKEFGAECITWGL 262 (416)
T ss_pred cCccccccccccEEEEEEecHHHHHHHHHHHHHHHHhcCCCeEEEEECCCccccchhhHHHHHHHHHHHHHhHhhhhccc
Confidence 124567999999999999999999999999878999999999999999999999999999 67
Q ss_pred ----------CCeeEeeEeHHHHHHHHhcCCCCccEEEeCCCcchhhhhhhhhccCCCCcccccccCCCceeEeeccCCC
Q psy8787 227 ----------PEVKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGTA 296 (364)
Q Consensus 227 ----------p~i~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~GDIlSD~aa~l~G~lGl~psa~ig~~~~~fEp~HGsa 296 (364)
|+|+++|++||++|||||++|++||||||+|||||||||+||+++||+||+||+|+|++.+||||+||||
T Consensus 263 w~~~~~p~~~p~I~~~~~~vDa~~~~lv~~P~~fDVivt~NlfGDILSDlaa~l~GslGlapSanig~~~alFEp~HGSA 342 (416)
T TIGR00183 263 WDKYKNPNPGKEIVIKDRIADAFLQQILTRPDEYDVIATMNLNGDYISDALAAQVGGIGIAPGANIGDEIGIFEATHGTA 342 (416)
T ss_pred cccccCcccCCceeEeehhHHHHHHHHhhCcccCcEEEEcCcccchhhHHHHHhcCchhhcceeeeCCCceEEECCCCCc
Confidence 4999999999999999999999999999999999999999999999999999999999899999999999
Q ss_pred CCccCCCCCChhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHcCccccCCC----CC-C-CCHHHHHHHHHhC
Q psy8787 297 PDIAGKDLANPTALLLSAVMMLRHLDLNTHADVIQKAALDTIKEGKYRTGDL----GG-K-AKCSEFTNEICSK 364 (364)
Q Consensus 297 pdiaGk~~aNP~a~ils~ammL~~lg~~~~a~~i~~Av~~~~~~g~~~T~Dl----gg-~-~~T~e~~~av~~~ 364 (364)
|||||||+|||+|+|||++|||||||++++|++|++||.+++++|+ +|+|| || + +||+||+|+|+++
T Consensus 343 PdiAGk~iANP~a~IlS~amML~~lg~~~~A~~Ie~AV~~~l~~G~-~T~Dl~~~~gg~~~~~T~e~~daI~~~ 415 (416)
T TIGR00183 343 PKYAGQDKVNPGSIILSGEMMLEHMGWKEAADLIKKAMEKAIASKI-VTYDFARLMDGAKEVKCSEFAEAIIEN 415 (416)
T ss_pred hhhcCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcCC-cccccccccCCCcccCHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999995 89999 55 4 7999999999874
No 21
>PF00180 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; InterPro: IPR024084 Isocitrate dehydrogenase (IDH) [, ] is an important enzyme of carbohydrate metabolism which catalyses the oxidative decarboxylation of isocitrate into alpha-ketoglutarate. IDH is either dependent on NAD+ (1.1.1.41 from EC) or on NADP+ (1.1.1.42 from EC). In eukaryotes there are at least three isozymes of IDH: two are located in the mitochondrial matrix (one NAD+-dependent, the other NADP+-dependent), while the third one (also NADP+-dependent) is cytoplasmic. In Escherichia coli the activity of a NADP+-dependent form of the enzyme is controlled by the phosphorylation of a serine residue; the phosphorylated form of IDH is completely inactivated. 3-isopropylmalate dehydrogenase (1.1.1.85 from EC) (IMDH) [, ] catalyses the third step in the biosynthesis of leucine in bacteria and fungi, the oxidative decarboxylation of 3-isopropylmalate into 2-oxo-4-methylvalerate. Tartrate dehydrogenase (1.1.1.93 from EC) [] catalyses the reduction of tartrate to oxaloglycolate. These enzymes are evolutionary related. To this family also belongs the enzyme tartrate dehydrogenase, which shows strong homology to prokaryotic isopropylmalate dehydrogenases and, to a lesser extent, isocitrate dehydrogenase []. This entry represents a structural domain found in all types of isocitrate dehydrogenase, and in isopropylmalate dehydrogenase and tartrate dehydrogenase. The crystal structure of Escherichia coli isopropylmalate dehydrogenase has been described []. ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1WAL_A 1CNZ_B 2D4V_C 1CM7_A 4AOY_D 3FMX_X 3FLK_C 1A05_A 1X0L_B 4F7I_D ....
Probab=100.00 E-value=1.5e-100 Score=753.89 Aligned_cols=312 Identities=44% Similarity=0.731 Sum_probs=294.9
Q ss_pred CccccCCCCcCHHHHHHHHHHHHhhcC----CCceeEEEEeeeeeecCCCCccccchhHHHHhhhcCEEEEcccc--c--
Q psy8787 45 SWRGLKVQGLGEFNLYANVRPCRSLEG----YPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVCNSNYATKWFSE--R-- 116 (364)
Q Consensus 45 ~i~~i~GDGIGp~EV~a~~r~Vl~a~g----~~i~~~~vdig~~re~~~G~Y~~lp~etl~~ik~~daiLkGav~--~-- 116 (364)
+|++|||||||| ||+.++++|++++. ++++|+++++|...++++|+ ++|+++++.++++|++||||++ .
T Consensus 1 kI~vipGDGIGp-Ev~~~~~~Vl~a~~~~~~~~~e~~~~~~G~~~~~~~g~--~lp~et~~~i~~~daiL~Gai~~p~~~ 77 (348)
T PF00180_consen 1 KIAVIPGDGIGP-EVMPAALRVLEAAAEKYGLDFEFEEFDIGGEAYDKTGE--PLPDETLEAIKRADAILKGAIGTPKPP 77 (348)
T ss_dssp EEEEEEESTTHH-HHHHHHHHHHHHHHHHHTEEEEEEEEETSHHHHHHHSS--SSHHHHHHHHHHCSEEEEEE--CGGSS
T ss_pred CcceeccCcchH-HHHHHHHHHHHHHHhhcccccccccccchhhhhhhccc--cccHHHHHHHhhcCcEEEccccccccc
Confidence 478999999999 99999999999975 78999999999988889996 8999999999999999999994 1
Q ss_pred ------c---hhhhcccceeeeeeecc--CCCCCCCC-----CccEEEEccCCCccccCceeeeeCC-----EEEEEEEe
Q psy8787 117 ------G---ASVEFNLYANVRPCRSL--EGYPTLYD-----DVDVVTIRENTEGEYSGIEHEIVDG-----VVQSIKLI 175 (364)
Q Consensus 117 ------g---LR~~ldlyanvRP~~~~--pg~~~~~~-----~iD~vIvREnteg~Y~g~~~~~~~~-----~a~~~~~~ 175 (364)
+ ||+.||||+|+||||++ ++..+|++ ++|+|||||||||+|+|.++...++ ++++++++
T Consensus 78 ~~~~~~~l~~lR~~ldl~anvRp~~~~~~~~~~~~~~~~~~~~iDivivREnteG~Y~g~~~~~~~~~~~~~~a~~~~~~ 157 (348)
T PF00180_consen 78 GIRSENGLLKLRKELDLYANVRPVRSFPGPGVPSPLKDEIPEGIDIVIVRENTEGLYSGIEHEIGDGGTPDEVAIDTKVI 157 (348)
T ss_dssp SHSHHHHHHHHHHHTTHHEEEEEEEEECETTGGSSBSHHHHTTSEEEEEEESSSGGGGEEEEEECSEEEGSSEEEEEEEE
T ss_pred ccccHHHHHHHHHhcccceeeEEEEEeccccccccccccccCcceEEEecccccCcccCCCCceeeccCCCceEEEeecc
Confidence 1 99999999999999999 46667765 5999999999999999999987665 89999999
Q ss_pred cHHHHHHHHHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhh-cCCCeeEeeEeHHHHHHHHhcCCCCccEEE
Q psy8787 176 TEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAE-KFPEVKFEEKYLDTVCLNMVQDPTQYDVLV 254 (364)
Q Consensus 176 t~~~~eriar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~-~yp~i~~~~~~vD~~~~~lv~~P~~fdViv 254 (364)
||++++||+|+||++|++|+|++||++||+|+|+.++ +|+++|+|+++ +||+|++++++||+++|+||++|++|||||
T Consensus 158 t~~~~eRi~r~AF~~A~~r~~k~Vt~v~KaNvl~~~~-lf~~~~~eva~~~yp~I~~~~~~vD~~~~~Lv~~P~~fdViv 236 (348)
T PF00180_consen 158 TREGIERIARFAFEYARKRGRKKVTVVHKANVLKSTD-LFREVFQEVAKQEYPDIEVEHMLVDAAAMQLVKNPEQFDVIV 236 (348)
T ss_dssp EHHHHHHHHHHHHHHHHHTTTSEEEEEESTTTSTTHH-HHHHHHHHHHHHTHTTSEEEEEEHHHHHHHHHHSGGGESEEE
T ss_pred ccchhhHHHHHHHHHHHHhCCceEEEEeccchhHHHH-HHHHHHHHHHHhhcceeEeeeeechhhhheeecCCcceeEEe
Confidence 9999999999999999999999999999999999998 99999999999 999999999999999999999999999999
Q ss_pred eCCCcchhhhhhhhhccCCCCcccccccC-CCceeEeeccCCCCCccCCCCCChhHHHHHHHHHHHh-cCcHHHHHHHHH
Q psy8787 255 MPNLYGDILSDMCAGLVGGLGLTPSGNIG-LNGALFESVHGTAPDIAGKDLANPTALLLSAVMMLRH-LDLNTHADVIQK 332 (364)
Q Consensus 255 t~Nl~GDIlSD~aa~l~G~lGl~psa~ig-~~~~~fEp~HGsapdiaGk~~aNP~a~ils~ammL~~-lg~~~~a~~i~~ 332 (364)
|+|||||||||++++++||+||+||+|+| +..+||||+|||||||||||+|||+|||||++|||+| ||++++|++|++
T Consensus 237 ~~Nl~GDIlSDl~a~l~G~lGl~psanig~~~~a~fEp~HGSApdiaGk~~aNP~a~Ils~a~mL~~~lg~~~~a~~i~~ 316 (348)
T PF00180_consen 237 TPNLFGDILSDLAAGLVGGLGLAPSANIGPDGHAMFEPVHGSAPDIAGKGIANPIAMILSAAMMLEHSLGLPEAADAIEK 316 (348)
T ss_dssp EEHHHHHHHHHHHHHHHTSGGGEEEEEEETSSEEEEEESSTTTGGGTTSSHS-THHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred ecchhHHHHHHHhhhcCCChhhhhhhccCccccccccccccccccccCCcccCcHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 99999999999999999999999999999 6789999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHcCccccCCCCCCC----CHHHHHHHH
Q psy8787 333 AALDTIKEGKYRTGDLGGKA----KCSEFTNEI 361 (364)
Q Consensus 333 Av~~~~~~g~~~T~Dlgg~~----~T~e~~~av 361 (364)
||.+++++|. +|+||||++ +|+||+|+|
T Consensus 317 Av~~~l~~g~-~T~Dlgg~~~~~~~T~e~~daV 348 (348)
T PF00180_consen 317 AVEKVLEEGI-RTPDLGGSATTAVSTEEFGDAV 348 (348)
T ss_dssp HHHHHHHTTE-EBGGGHTTTCEEBHHHHHHHHH
T ss_pred HHHHHHHcCC-CCccccCCCCCCCCHHHHHhhC
Confidence 9999999985 899999999 999999997
No 22
>KOG0784|consensus
Probab=100.00 E-value=2.7e-96 Score=696.66 Aligned_cols=317 Identities=47% Similarity=0.752 Sum_probs=300.7
Q ss_pred CCCCccccCCCCcCHHHHHHHHHHHHhhcCCCceeEEEEeeeeeecCCCCccccchhHHHHhhhcCEEEEcccc----c-
Q psy8787 42 SQWSWRGLKVQGLGEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVCNSNYATKWFSE----R- 116 (364)
Q Consensus 42 ~~~~i~~i~GDGIGp~EV~a~~r~Vl~a~g~~i~~~~vdig~~re~~~G~Y~~lp~etl~~ik~~daiLkGav~----~- 116 (364)
+...+++|||||||| |++..++.+++++.+|++|++++++. .++.+. ..++++++++++++++|||.+. .
T Consensus 41 g~~tVTlipGdGIGp-e~~~~V~~v~~a~~~PV~fE~i~v~~--~~~~~~--~~~~e~v~Si~rNkValkG~i~t~~~~g 115 (375)
T KOG0784|consen 41 GRHTVTLIPGDGIGP-ELTNAVREVFSAAHAPVEFEEIEVSG--SNKESS--EDLDEAVESIKRNKVALKGNIETPDLPG 115 (375)
T ss_pred CcceEEEeCCCCcCH-HHHHHHHHHHHhcCCCeeEEEEEccC--Cccccc--hhHHHHHHHHHhcceeEeecccCCCCcc
Confidence 355688899999999 99999999999999999999999986 223332 4679999999999999999982 1
Q ss_pred c-------hhhhcccceeeeeeeccCCCCCCCCCccEEEEccCCCccccCceeeeeCCEEEEEEEecHHHHHHHHHHHHH
Q psy8787 117 G-------ASVEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLITEEASSRVAEFAFE 189 (364)
Q Consensus 117 g-------LR~~ldlyanvRP~~~~pg~~~~~~~iD~vIvREnteg~Y~g~~~~~~~~~a~~~~~~t~~~~eriar~Af~ 189 (364)
+ ||+.||||||+-.|+++||++++++++|+||+||||||+|+|.||+.++|++++++++|++.++||+||||+
T Consensus 116 ~~~s~n~~LR~~LDLyanvv~~~slpG~~tRh~~vDiviIRENTEGEYs~LEHE~VpGVVEsLKVvT~~kseRIaryAF~ 195 (375)
T KOG0784|consen 116 GAKSLNVKLRKELDLYANVVHCKSLPGVKTRHENVDIVIIRENTEGEYSGLEHESVPGVVESLKVVTRFKSERIARYAFE 195 (375)
T ss_pred chhhhHHHHHHhhhhhhheeeeeccCCcccccCCccEEEEecCCcccccccccccCcchhheeeeehhhhhHHHHHHHHH
Confidence 1 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCceEEEEeCcccccccHHHHHHHHHHhhcCCCeeEeeEeHHHHHHHHhcCCCCccEEEeCCCcchhhhhhhhh
Q psy8787 190 YAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAG 269 (364)
Q Consensus 190 ~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp~i~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~GDIlSD~aa~ 269 (364)
||.++||||||.|||||+||.+||||+++|+||++.||+|+++.|+||++|||||++|++|||+|+|||||+|+|++|++
T Consensus 196 yA~k~gRKkVTaVHKAnimKL~DGlFle~~~eva~~Yp~I~~e~miVDN~~MQlvs~P~qFDvmv~pnlYgniisNiaaG 275 (375)
T KOG0784|consen 196 YAKKNGRKKVTAVHKANIMKLGDGLFLESCQEVAKKYPDITFEEMIVDNACMQLVSRPQQFDVMVMPNLYGNIISNIAAG 275 (375)
T ss_pred HHHHhCCceEEEEeccCceecchhhHHHHHHHHHhcCCCccHHHhhHHHhHHHhhcCchheeeEechHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred ccCCCCcccccccCCCceeEee--ccCCCCCccCCCCCChhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHcCccccCC
Q psy8787 270 LVGGLGLTPSGNIGLNGALFES--VHGTAPDIAGKDLANPTALLLSAVMMLRHLDLNTHADVIQKAALDTIKEGKYRTGD 347 (364)
Q Consensus 270 l~G~lGl~psa~ig~~~~~fEp--~HGsapdiaGk~~aNP~a~ils~ammL~~lg~~~~a~~i~~Av~~~~~~g~~~T~D 347 (364)
|+||.|+.|++|+|+++++||| .|+ ..+++||++|||+|||||++|||||||++.+|++|++||.+|+.+|+++|+|
T Consensus 276 lvGG~Glv~G~n~G~~yAVFE~g~r~~-~~~~~g~~~aNPtA~llss~~MLrHL~l~~~Ad~i~~Av~~vi~egk~rT~D 354 (375)
T KOG0784|consen 276 LVGGAGLVSGANYGDDYAVFEPGARHT-GTSIAGKNIANPTAMLLSSVDMLRHLGLPSHADRISTAVKRVIDEGKIRTKD 354 (375)
T ss_pred hcCCCCcccccccccceEEeccccccc-chhhhcccccCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccccc
Confidence 9999999999999999999999 454 4679999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHhC
Q psy8787 348 LGGKAKCSEFTNEICSK 364 (364)
Q Consensus 348 lgg~~~T~e~~~av~~~ 364 (364)
|||+.||+||+++||++
T Consensus 355 lGG~~Tt~dvi~avI~~ 371 (375)
T KOG0784|consen 355 LGGQSTTQDVIDAVIAN 371 (375)
T ss_pred cCCCcchHHHHHHHHHH
Confidence 99999999999999864
No 23
>PRK08299 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=2.5e-93 Score=704.52 Aligned_cols=311 Identities=19% Similarity=0.253 Sum_probs=286.0
Q ss_pred CCCccccCCCCcCHHHHHHHHHHHHhhcCCCceeEEEEeeeeeecCCCCccccchhHHHHhhhcCEEEEcccc-------
Q psy8787 43 QWSWRGLKVQGLGEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVCNSNYATKWFSE------- 115 (364)
Q Consensus 43 ~~~i~~i~GDGIGp~EV~a~~r~Vl~a~g~~i~~~~vdig~~re~~~G~Y~~lp~etl~~ik~~daiLkGav~------- 115 (364)
.+.+.+|||||||+ |++..++.++.++.++++|+++|+|...+.++|. .+|++++++++++|++||||++
T Consensus 7 ~~~~~~~~gd~i~~-~~~~~~~~~~~~~~~~i~~~~~d~G~~~~~~~G~--~lp~~tl~~ik~~da~LkGav~tp~~~~~ 83 (402)
T PRK08299 7 KNPVVELDGDEMTR-IIWKFIKDKLILPYLDIDLEYYDLGIENRDATDD--QVTIDAANAIKKYGVGVKCATITPDEARV 83 (402)
T ss_pred CCceEEecCCCchH-HHHHHHHHHHhccCCCeEEEEEcCCHHHHHHhCC--cCCHHHHHHHHHCCEEEECCccCCCcccc
Confidence 56788899999999 9999999999999999999999999988888996 8999999999999999999994
Q ss_pred ---------cc----hhhhcccceeeeee--ec----cCCCCCCCCCccEEEEccCCCccccCceeee------------
Q psy8787 116 ---------RG----ASVEFNLYANVRPC--RS----LEGYPTLYDDVDVVTIRENTEGEYSGIEHEI------------ 164 (364)
Q Consensus 116 ---------~g----LR~~ldlyanvRP~--~~----~pg~~~~~~~iD~vIvREnteg~Y~g~~~~~------------ 164 (364)
+. ||+.||||+|+||| ++ +||+++ +++||||||||+|+|+++..
T Consensus 84 ~~~~~~~~~~s~n~~LRk~ldLyaNiRPv~~k~i~~~~pg~~~-----~ivivREnTEg~Y~gi~~~~~r~~~~~~~~~~ 158 (402)
T PRK08299 84 KEFNLKKMWKSPNGTIRNILGGTVFREPIICKNVPRLVPGWTK-----PIVIGRHAYGDQYRATDFKVPGKGKLTLVFTG 158 (402)
T ss_pred cccCccccccCchHHHHHHcCCeEEEEeeecccccccCCCCCC-----CEEEEecccCCcccceeEEeccCccceeeeec
Confidence 11 99999999999998 66 777654 49999999999999998764
Q ss_pred eCCE------------EEEEEE-ecHHHHHHHHHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhh-cCC---
Q psy8787 165 VDGV------------VQSIKL-ITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAE-KFP--- 227 (364)
Q Consensus 165 ~~~~------------a~~~~~-~t~~~~eriar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~-~yp--- 227 (364)
.+|+ +.++++ +||++++||+|+||+||++|+ ++||+|||+|||+.+||||+++|+|+|+ +||
T Consensus 159 ~~g~~~e~~~~~~~~~~~~~~~~~Tr~~~eRIa~~AF~~A~~r~-~kVt~v~KaNVlk~t~glf~~~~~evA~~~yp~~~ 237 (402)
T PRK08299 159 EDGEPIEHEVHDFPGAGVAMGMYNLDESIRDFARASFNYGLDRK-YPVYLSTKNTILKAYDGRFKDIFQEVYEAEFKEKF 237 (402)
T ss_pred CCCccccceecccccCceeEEEeecHHHHHHHHHHHHHHHHHcC-CCEEEECCCCcchhhhHHHHHHHHHHHHHhCcccc
Confidence 2221 224555 999999999999999999986 4799999999999999999999999995 899
Q ss_pred ---CeeEeeEeHHHHHHHHhcCCCCccEEEeCCCcchhhhhhhhhccCCCCcccccccCCCc--eeEeeccCCCCC----
Q psy8787 228 ---EVKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNG--ALFESVHGTAPD---- 298 (364)
Q Consensus 228 ---~i~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~GDIlSD~aa~l~G~lGl~psa~ig~~~--~~fEp~HGsapd---- 298 (364)
+|++++++||++|||||++|++| ||||+|||||||||++|+++||+|++||+|+|+++ +||||+||||||
T Consensus 238 ~~~~i~~~~~~vDa~~~~lv~~P~~f-Vivt~NlfGDIlSDlaa~l~GglG~apSanig~~~~~a~FEp~HGSAPD~~~~ 316 (402)
T PRK08299 238 EAAGITYEHRLIDDMVASALKWEGGY-VWACKNYDGDVQSDTVAQGFGSLGLMTSVLMTPDGKTVEAEAAHGTVTRHYRQ 316 (402)
T ss_pred ccCcEEEEEeeHHHHHHHHHhCcCCc-EEEEeccccchhhhHHHhhcCCcccccceeeCCCCCcEEEecCCCCCcccccc
Confidence 59999999999999999999999 99999999999999999999999999999999885 799999999999
Q ss_pred -ccCCCC-CChhHHHHHHHHHHHhcCc-------HHHHHHHHHHHHHHHHcCccccCCCC-------CCCCHHHHHHHHH
Q psy8787 299 -IAGKDL-ANPTALLLSAVMMLRHLDL-------NTHADVIQKAALDTIKEGKYRTGDLG-------GKAKCSEFTNEIC 362 (364)
Q Consensus 299 -iaGk~~-aNP~a~ils~ammL~~lg~-------~~~a~~i~~Av~~~~~~g~~~T~Dlg-------g~~~T~e~~~av~ 362 (364)
|||||+ |||+|||||++|||+|||+ .++|++|++||.+++++|. +|+||| |.+||+||+|+|+
T Consensus 317 ~IaGk~~~ANP~A~IlS~amML~~LG~~~~~~~l~~~a~~I~~Av~~~l~~g~-~T~Dlg~~~g~~~g~~tT~e~~daIi 395 (402)
T PRK08299 317 HQKGEETSTNPIASIFAWTRGLAHRGKLDGNPELVKFADTLEKVCIETVESGF-MTKDLALLVGPDQKWLTTEEFLDAID 395 (402)
T ss_pred cccCCCCccCHHHHHHHHHHHHHHhCCccccchHHHHHHHHHHHHHHHHHcCC-cCccchhccCCCCCCcCHHHHHHHHH
Confidence 999997 9999999999999999999 8899999999999999995 799995 4599999999998
Q ss_pred hC
Q psy8787 363 SK 364 (364)
Q Consensus 363 ~~ 364 (364)
++
T Consensus 396 ~~ 397 (402)
T PRK08299 396 EN 397 (402)
T ss_pred HH
Confidence 74
No 24
>PLN00103 isocitrate dehydrogenase (NADP+); Provisional
Probab=100.00 E-value=1.1e-90 Score=687.32 Aligned_cols=310 Identities=20% Similarity=0.261 Sum_probs=284.9
Q ss_pred ccccCCCCcCHHHHHHHHHHHHhhcCCCceeEEEEeeeeeecCCCCccccchhHHHHhhhcCEEEEcccc----------
Q psy8787 46 WRGLKVQGLGEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVCNSNYATKWFSE---------- 115 (364)
Q Consensus 46 i~~i~GDGIGp~EV~a~~r~Vl~a~g~~i~~~~vdig~~re~~~G~Y~~lp~etl~~ik~~daiLkGav~---------- 115 (364)
+.+|+|||||+ |++..+++++.++.++++|+++|+|...++++|. .+|+++++.++++|++||||++
T Consensus 12 ~~~~~Gd~~~~-~~~~~~~~~~~~~~~~i~~~~~d~G~~~~~~tg~--~lp~e~le~~k~~da~lkGav~tp~~~~~~~~ 88 (410)
T PLN00103 12 IVEMDGDEMTR-VIWKSIKDKLIFPFLDLDIKYFDLGLPNRDATDD--KVTVESAEATLKYNVAIKCATITPDEARVKEF 88 (410)
T ss_pred eEEecCCcchH-HHHHHHHHHHhcCCCCeEEEEEcCCHHHHHHhCC--cCCHHHHHHHHHCCEEEECCccCccccccccc
Confidence 56699999999 9999999999999999999999999988888996 8999999999999999999994
Q ss_pred c------c----hhhhcccceeeee--eeccC----CCCCCC---------------------CCccEEEEccCCCcccc
Q psy8787 116 R------G----ASVEFNLYANVRP--CRSLE----GYPTLY---------------------DDVDVVTIRENTEGEYS 158 (364)
Q Consensus 116 ~------g----LR~~ldlyanvRP--~~~~p----g~~~~~---------------------~~iD~vIvREnteg~Y~ 158 (364)
. . ||+.||||+|+|| ||++| |+++|+ .++|+|||||||||+|
T Consensus 89 ~~~~~~~s~n~~lRk~ldlyanvRP~~vk~~~~~~~g~~~~i~~~~~~~~~~~~~~d~v~~~~~~id~vivRENTEg~y- 167 (410)
T PLN00103 89 GLKQMWKSPNGTIRNILNGTVFREPIICKNIPRLVPGWTKPICIGRHAFGDQYRATDAVIKGPGKLKLVFVPEGKDEKT- 167 (410)
T ss_pred CccccccCchHHHHHHcCCeEEecchhccccCccCCCCCCceeecccccccccccceeccCCCCceEEEEEecCCCcee-
Confidence 1 1 9999999999999 99988 887764 6789999999999999
Q ss_pred Cceeeee--C-CEEEEEEEe-cHHHHHHHHHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhh-----cCC--
Q psy8787 159 GIEHEIV--D-GVVQSIKLI-TEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAE-----KFP-- 227 (364)
Q Consensus 159 g~~~~~~--~-~~a~~~~~~-t~~~~eriar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~-----~yp-- 227 (364)
+++.. . ..+.+++++ |+++++||+|+||++|++|+ ++||++||+|||+.+||+|+++|+|+++ +||
T Consensus 168 --e~~~~~~~g~~~v~~~~~~T~~~~~Riar~AFe~A~~r~-~~vt~v~KaNVlk~~dglf~~~~~eva~~~~~~eyp~~ 244 (410)
T PLN00103 168 --ELEVYNFTGAGGVALSMYNTDESIRAFAEASMNTAYQKK-WPLYLSTKNTILKKYDGRFKDIFQEVYEAQWKSKFEAA 244 (410)
T ss_pred --EEEeeccCCCcceEEEEEcCHHHHHHHHHHHHHHHHhcC-CcEEEECCCCCchhhHHHHHHHHHHHHHhhhhhhCCCC
Confidence 33321 2 234567886 99999999999999999986 4699999999999999999999999996 799
Q ss_pred CeeEeeEeHHHHHHHHhcCCCCccEEEeCCCcchhhhhhhhhccCCCCcccccccCCCc--eeEeeccCCCCC------c
Q psy8787 228 EVKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNG--ALFESVHGTAPD------I 299 (364)
Q Consensus 228 ~i~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~GDIlSD~aa~l~G~lGl~psa~ig~~~--~~fEp~HGsapd------i 299 (364)
+|++++++||++||+||++|++| ||||+|||||||||++|+++|||||+||+|+|+++ +||||+|||||| |
T Consensus 245 ~I~~~~~lVDa~a~~lv~~P~~f-Viv~~NLfGDIlSDlaA~l~GslGlapSanig~~~~~~~FEp~HGSApd~~~~~di 323 (410)
T PLN00103 245 GIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQK 323 (410)
T ss_pred ceEEEEeEHHHHHHHHhcCCCCC-EEEEcccchHHHHHHHHHhcCchhhhhccccCCCCCcEEEeCCCCcCcccchhhhh
Confidence 79999999999999999999999 99999999999999999999999999999999875 699999999998 8
Q ss_pred cCCCCCChhHHHHHHHHHHHhc-------CcHHHHHHHHHHHHHHHHcCccccCCC-----CCC------CCHHHHHHHH
Q psy8787 300 AGKDLANPTALLLSAVMMLRHL-------DLNTHADVIQKAALDTIKEGKYRTGDL-----GGK------AKCSEFTNEI 361 (364)
Q Consensus 300 aGk~~aNP~a~ils~ammL~~l-------g~~~~a~~i~~Av~~~~~~g~~~T~Dl-----gg~------~~T~e~~~av 361 (364)
||||+|||+|+|||++|||+|| |+.++|++|++||.+++++|. +|+|| ||+ ++|+||+|+|
T Consensus 324 aGk~iANP~A~IlS~ammL~~l~~~~~~~g~~~~a~~i~~Av~~~l~~G~-~T~Dl~~~~~gg~~~~~~~~~T~e~~daV 402 (410)
T PLN00103 324 GGETSTNSIASIFAWSRGLAHRAKLDGNARLLDFTEKLEAACVGTVESGK-MTKDLALLIHGPKVSRDQYLNTEEFIDAV 402 (410)
T ss_pred cCCCccChHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHcCC-CCcccccccCCCcccCCCCcCHHHHHHHH
Confidence 9999999999999999999999 899999999999999999996 79999 454 8999999999
Q ss_pred HhC
Q psy8787 362 CSK 364 (364)
Q Consensus 362 ~~~ 364 (364)
+++
T Consensus 403 ~~~ 405 (410)
T PLN00103 403 AEE 405 (410)
T ss_pred HHH
Confidence 874
No 25
>PTZ00435 isocitrate dehydrogenase; Provisional
Probab=100.00 E-value=1.3e-86 Score=657.91 Aligned_cols=310 Identities=19% Similarity=0.261 Sum_probs=281.5
Q ss_pred ccCCCCcCHHHHHHHHHHHHhhcCCCceeEEEEeeeeeecCCCCccccchhHHHHhhhcCEEEEcccc--------c---
Q psy8787 48 GLKVQGLGEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVCNSNYATKWFSE--------R--- 116 (364)
Q Consensus 48 ~i~GDGIGp~EV~a~~r~Vl~a~g~~i~~~~vdig~~re~~~G~Y~~lp~etl~~ik~~daiLkGav~--------~--- 116 (364)
.+-||.+-. -++.-.+.-|-.+.++++|+++|+|...++++|. .+|++++++++++|++||||++ .
T Consensus 14 ~~~~~em~~-~~~~~~~~~~~~~~~~i~~~~~d~g~~~~~~tg~--~lp~ea~eaik~~~v~LkGa~~TP~~~~~~~~~l 90 (413)
T PTZ00435 14 ELDGDEMTR-IIWKMIKEKLILPYLDVPIKYYDLSIENRDKTDD--KVTVDAAEAIKKHKVGIKCATITPDEARVKEFNL 90 (413)
T ss_pred EecccHHHH-HHHHHHHHhhccCCCCceEEEEeCcHHHHHhcCC--cCCHHHHHHHHHcCEEEECcccCCcccccccccc
Confidence 367888887 7777666666667789999999999988889997 8999999999999999999984 1
Q ss_pred -----c----hhhhcccceeeeee------eccCCCCCC-----------CCCccEEEEccCC-CccccCc-eee-----
Q psy8787 117 -----G----ASVEFNLYANVRPC------RSLEGYPTL-----------YDDVDVVTIRENT-EGEYSGI-EHE----- 163 (364)
Q Consensus 117 -----g----LR~~ldlyanvRP~------~~~pg~~~~-----------~~~iD~vIvREnt-eg~Y~g~-~~~----- 163 (364)
. ||+.||||+|+||| +++||+++| |+++|++|+|||| ||+|++. +++
T Consensus 91 ~~~~~S~n~~LR~~ldlyanvRPi~~k~i~~~~pg~~~~i~i~Ren~e~~y~~id~vi~rent~e~~y~~~~g~~~~~~~ 170 (413)
T PTZ00435 91 KKMWKSPNGTIRNILDGTVFREPIIIKNIPRLVPGWKKPIVIGRHAFGDQYKATDFVVDGPGKLELVFTPADGSEPQRVD 170 (413)
T ss_pred ccccCCchHHHHHHcCCeEEEeeeeccccCccCCCCCCCeeeeccccCCCcCceEEEEecCCEEEEEEecCCCCcceeee
Confidence 1 99999999999998 557888766 7899999999999 9999998 543
Q ss_pred ----eeCCEEEEEEEecHHHHHHHHHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhh-cCC------CeeEe
Q psy8787 164 ----IVDGVVQSIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAE-KFP------EVKFE 232 (364)
Q Consensus 164 ----~~~~~a~~~~~~t~~~~eriar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~-~yp------~i~~~ 232 (364)
..++++.++ ++||++++||+|+||+||++|++ +||++||+|||+.+||+|+++|+|+++ +|| +|+++
T Consensus 171 ~~~~~~~~v~~~~-~~Tr~~~eRIar~AF~~A~~r~~-~Vt~v~KaNVlk~~dglf~~~~~eva~~eYpe~~~~~~I~~~ 248 (413)
T PTZ00435 171 VFDFKGGGVAMGM-YNTDESIEGFARSCFQYALDRKM-PLYLSTKNTILKKYDGRFKDIFQEIYDEEYKAKFEKAGLWYE 248 (413)
T ss_pred eeccCCCCeeEEE-EeCHHHHHHHHHHHHHHHHHcCC-CEEEECCCCcchhhHHHHHHHHHHHHHHhCccccccCCEEEE
Confidence 246777666 99999999999999999999864 799999999999999999999999996 799 99999
Q ss_pred eEeHHHHHHHHhcCCCCccEEEeCCCcchhhhhhhhhccCCCCcccccccCCCc--eeEeeccCCCCCc-----cCC-CC
Q psy8787 233 EKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNG--ALFESVHGTAPDI-----AGK-DL 304 (364)
Q Consensus 233 ~~~vD~~~~~lv~~P~~fdVivt~Nl~GDIlSD~aa~l~G~lGl~psa~ig~~~--~~fEp~HGsapdi-----aGk-~~ 304 (364)
+++||++|||||++|++| ||||+|||||||||++|+++|||||+||+|+|+++ ++|||+||||||| +|| ++
T Consensus 249 ~~lVDa~~m~lv~~P~~f-ViV~~NlfGDIlSDlaA~l~GglGlapSanig~d~~~a~FEp~HGSApdi~~~~iaGk~~~ 327 (413)
T PTZ00435 249 HRLIDDMVAQAIKSEGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTSVLVCPDGKTVEAEAAHGTVTRHYRQHQKGKETS 327 (413)
T ss_pred EeeHHHHHHHHhhCCCCe-EEEeecccchhhhHHHHHhcCcccccccceeCCCCCeEEEEcCcCCccccchhhhcCCCCc
Confidence 999999999999999999 99999999999999999999999999999999885 9999999999998 895 79
Q ss_pred CChhHHHHHHHHHHHhcCc-------HHHHHHHHHHHHHHHHcCccccCCCC----CC--------CCHHHHHHHHHhC
Q psy8787 305 ANPTALLLSAVMMLRHLDL-------NTHADVIQKAALDTIKEGKYRTGDLG----GK--------AKCSEFTNEICSK 364 (364)
Q Consensus 305 aNP~a~ils~ammL~~lg~-------~~~a~~i~~Av~~~~~~g~~~T~Dlg----g~--------~~T~e~~~av~~~ 364 (364)
|||+|+|||++|||+|||+ .++|++|++||.+++++|. +|+||| |+ ++|+||+|+|+++
T Consensus 328 ANP~A~Ils~ammL~~lg~~~~~~~~~~~A~~ie~Av~~~i~~g~-~T~Dlg~~~~G~~~~~~~~~~~T~e~~daV~~~ 405 (413)
T PTZ00435 328 TNSIASIFAWTRGLAHRAKLDNNQELVKFCQALERSCIETIEAGF-MTKDLAICVHGSSKVTRSDYLNTEEFIDKVAEK 405 (413)
T ss_pred cChHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHHcCC-CccccccccCCCccccCCCCcCHHHHHHHHHHH
Confidence 9999999999999999995 7899999999999999995 799997 75 8999999999864
No 26
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type. This model does not discriminate cytosolic, mitochondrial, and chloroplast proteins. However, the model starts very near the amino end of the cytosolic form; the finding of additional amino-terminal sequence may indicate a transit peptide.
Probab=100.00 E-value=2.9e-86 Score=654.65 Aligned_cols=312 Identities=19% Similarity=0.249 Sum_probs=285.1
Q ss_pred ccccCCCCcCHHHHHHHHHHHHhhcCCCceeEEEEeeeeeecCCCCccccchhHHHHhhhcCEEEEcccc----c-----
Q psy8787 46 WRGLKVQGLGEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVCNSNYATKWFSE----R----- 116 (364)
Q Consensus 46 i~~i~GDGIGp~EV~a~~r~Vl~a~g~~i~~~~vdig~~re~~~G~Y~~lp~etl~~ik~~daiLkGav~----~----- 116 (364)
+-.+-||.+-. -+|.-.+.-+-.+-++++|+++|+|...++++|. .+|++++++++++|++||||++ .
T Consensus 9 ~v~~~g~em~~-~~~~~~~~~~~~~~~~i~~~~~d~g~~~~~~tg~--~lp~ea~eaik~~dv~LkGa~~TP~~~~~~~~ 85 (409)
T TIGR00127 9 VVEMDGDEMTR-IIWELIKDKLILPYVELDLKYYDLGVEYRDATND--QVTVDAAEAIKKYNVGVKCATITPDEARVEEF 85 (409)
T ss_pred eEEecCcHHHH-HHHHHHHHhhccCCcCceEEEEeCcHHHHHhhCC--cCCHHHHHHHHHcCEEEECcccCCcccccccc
Confidence 33477998888 7777666667777889999999999988889997 8999999999999999999994 1
Q ss_pred -------c----hhhhcccceeeee------eeccCCCCCC-----------CCCccEEEEccCC-CccccCceeee---
Q psy8787 117 -------G----ASVEFNLYANVRP------CRSLEGYPTL-----------YDDVDVVTIRENT-EGEYSGIEHEI--- 164 (364)
Q Consensus 117 -------g----LR~~ldlyanvRP------~~~~pg~~~~-----------~~~iD~vIvREnt-eg~Y~g~~~~~--- 164 (364)
. ||+.||||+|+|| ++++||+++| |+++|++|+|||| ||+|+|.++..
T Consensus 86 ~l~k~~~S~n~~lR~~ldlyanvRPi~~~~~~~~~pg~~~~i~i~R~~~~~~y~~iD~vivREnt~Eg~Y~g~e~~~~~~ 165 (409)
T TIGR00127 86 KLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWEKPIIIGRHAFGDQYRATDFVVPGPGKLELVYKPKDGTQKVT 165 (409)
T ss_pred ccccccCCccHHHHHHcCCeEEeeeccccccCccCCCCCCCeeeeccccCCCcCceEEEEecCCeeeEEEECCCCCcccc
Confidence 1 9999999999999 8888998865 7899999999999 99999998632
Q ss_pred ---e-----CCEEEEEEEecHHHHHHHHHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHh-hcCC------Ce
Q psy8787 165 ---V-----DGVVQSIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAA-EKFP------EV 229 (364)
Q Consensus 165 ---~-----~~~a~~~~~~t~~~~eriar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va-~~yp------~i 229 (364)
. +|++.++ ++||++++||+|+||+||++|+ ++||++||+|||+.+||+|+++|+|++ ++|| +|
T Consensus 166 ~~~~~~~~~~~v~~~~-~~T~~~~eRIar~AF~~A~~~~-~~Vt~v~KaNVlk~~dglf~~~~~eva~~eYp~~~~~~~I 243 (409)
T TIGR00127 166 LKVYDFEEGGGVAMAM-YNTDESIEGFAHSSFQLALEKK-WPLYLSTKNTILKKYDGRFKDIFQEVYEAQYKSKFEALGI 243 (409)
T ss_pred eeeeeccCCCCeEEEE-EECHHHHHHHHHHHHHHHHHcC-CCEEEEcCcchhhhhhHHHHHHHHHHHHHhCcccccCCCE
Confidence 1 4677766 7999999999999999999986 579999999999999999999999997 7999 89
Q ss_pred eEeeEeHHHHHHHHhcCCCCccEEEeCCCcchhhhhhhhhccCCCCcccccccCCCce--eEeeccCCCCCc-----cCC
Q psy8787 230 KFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGA--LFESVHGTAPDI-----AGK 302 (364)
Q Consensus 230 ~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~GDIlSD~aa~l~G~lGl~psa~ig~~~~--~fEp~HGsapdi-----aGk 302 (364)
++++++||++|||||++|++| ||||+|||||||||++|+++|||||+||+|+|++++ +|||+||||||| |||
T Consensus 244 ~~~~~lVDa~~m~lv~~P~~f-Viv~~NlfGDIlSDlaA~l~GslGl~pSanig~~~~~~~fEp~HGSApdi~~~~iaGk 322 (409)
T TIGR00127 244 WYEHRLIDDMVAQALKSEGGF-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLICPDGKTFEAEAAHGTVTRHYRMYQKGQ 322 (409)
T ss_pred EEEEeeHHHHHHHHhhCCCCc-EEEecccchHHHHHHHHHhcCchhhhheeeeCCCCceEEeccccCCCcccchhhhCCC
Confidence 999999999999999999999 999999999999999999999999999999998875 679999999998 896
Q ss_pred -CCCChhHHHHHHHHHHHhcC-------cHHHHHHHHHHHHHHHHcCccccCCC----CCC-------CCHHHHHHHHHh
Q psy8787 303 -DLANPTALLLSAVMMLRHLD-------LNTHADVIQKAALDTIKEGKYRTGDL----GGK-------AKCSEFTNEICS 363 (364)
Q Consensus 303 -~~aNP~a~ils~ammL~~lg-------~~~~a~~i~~Av~~~~~~g~~~T~Dl----gg~-------~~T~e~~~av~~ 363 (364)
++|||+|+|||++|||+|+| ++++|++|++||.+++++|. +|+|| ||+ ++|+||+|+|++
T Consensus 323 ~~~ANP~A~IlS~ammL~~lg~~~~~~g~~~~A~~Ie~Av~~~i~~g~-~T~Dl~~~~GG~~~~~~~~~~T~e~~daV~~ 401 (409)
T TIGR00127 323 ETSTNSIASIFAWSRGLAHRAKLDNNPELSKFANILESACINTVEAGI-MTKDLALILGGSPVERSAYLNTEEFIDAVEE 401 (409)
T ss_pred CCccChHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHHHHhcCC-cccccccccCCCcccCCCCcCHHHHHHHHHH
Confidence 79999999999999999985 78999999999999999994 89999 888 999999999986
Q ss_pred C
Q psy8787 364 K 364 (364)
Q Consensus 364 ~ 364 (364)
+
T Consensus 402 ~ 402 (409)
T TIGR00127 402 R 402 (409)
T ss_pred H
Confidence 4
No 27
>PLN03065 isocitrate dehydrogenase (NADP+); Provisional
Probab=100.00 E-value=2.5e-83 Score=641.29 Aligned_cols=309 Identities=21% Similarity=0.270 Sum_probs=284.7
Q ss_pred ccccCCCCcCHHHHHHHHHHHHhhcCCCceeEEEEeeeeeecCCCCccccchhHHHHhhhcCEEEEcccc----------
Q psy8787 46 WRGLKVQGLGEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVCNSNYATKWFSE---------- 115 (364)
Q Consensus 46 i~~i~GDGIGp~EV~a~~r~Vl~a~g~~i~~~~vdig~~re~~~G~Y~~lp~etl~~ik~~daiLkGav~---------- 115 (364)
+..|+|||||+ ++|..++.+|..+.++++|+++|+|....+++|. .+|.+++++++++|++||||+.
T Consensus 80 iv~~~GDem~r-~i~~~i~~~li~p~~di~~~~~dlG~e~rd~Tgd--~v~~da~~aikk~~v~lKgAt~TP~~~rv~e~ 156 (483)
T PLN03065 80 IVEMDGDEMTR-VIWQMIKDKLIFPYLDLDIKYFDLGILNRDATDD--KVTVESAEATLKYNVAIKCATITPDEARVKEF 156 (483)
T ss_pred eEEecCCcchH-HHHHHHHHHHhcCCCCceEEEEeCcHHHHHhhCC--cCCHHHHHHHHHcCEEEECcccCCcccccccc
Confidence 56699999999 9999999999999999999999999988888997 8999999999999999999983
Q ss_pred ------c---c-hhhhcccceeeeee------eccCCCCCC-----------CCCccEEEE----------ccCCCcccc
Q psy8787 116 ------R---G-ASVEFNLYANVRPC------RSLEGYPTL-----------YDDVDVVTI----------RENTEGEYS 158 (364)
Q Consensus 116 ------~---g-LR~~ldlyanvRP~------~~~pg~~~~-----------~~~iD~vIv----------REnteg~Y~ 158 (364)
+ + ||+.||+|+|+||| +.+||+.+| |+++|++|+ |||||+
T Consensus 157 ~lk~~w~SpN~tiR~~Ldl~v~rrPi~~~ni~r~vpg~~~pI~i~Rha~gd~Y~~iD~vi~~~g~~~~~~~rEnte~--- 233 (483)
T PLN03065 157 GLKSMWRSPNGTIRNILNGTVFREPILCKNIPRLVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFVPEDGNA--- 233 (483)
T ss_pred ccccccCCccHHHHHHcCCeEEeeeeeccccCccCCCCCCCeEEeecccCCCcCceEEEEecCCeeEEEeecCCCCC---
Confidence 1 1 99999999999999 888998765 688999998 999986
Q ss_pred Cceee----eeCCEEEEEEEecHHHHHHHHHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHh-----hcCC--
Q psy8787 159 GIEHE----IVDGVVQSIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAA-----EKFP-- 227 (364)
Q Consensus 159 g~~~~----~~~~~a~~~~~~t~~~~eriar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va-----~~yp-- 227 (364)
+.++. ..+|++.++ ++|+++++||+|+||+||++|+ ++||++||+||||.+||+|+++|+|++ ++||
T Consensus 234 ~~e~~v~~f~~~gva~~~-~nT~~sieriAr~AF~yA~~rk-~~Vt~v~KaNILK~~DGlF~dif~eVa~~eyk~~yp~~ 311 (483)
T PLN03065 234 PVELDVYDFKGPGVALAM-YNVDESIRAFAESSMAMALQKK-WPLYLSTKNTILKKYDGRFKDIFQEVYEEQWKQKFEEH 311 (483)
T ss_pred cceeEeeccCCCCeEEEE-EECHHHHHHHHHHHHHHHHHcC-CCEEEEeCCCcccchHHHHHHHHHHHHHHhhhhcCCCC
Confidence 55554 246788875 8899999999999999999985 579999999999999999999999999 4599
Q ss_pred CeeEeeEeHHHHHHHHhcCCCCccEEEeCCCcchhhhhhhhhccCCCCcccccccCCCc--eeEeeccCCCCC-----cc
Q psy8787 228 EVKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNG--ALFESVHGTAPD-----IA 300 (364)
Q Consensus 228 ~i~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~GDIlSD~aa~l~G~lGl~psa~ig~~~--~~fEp~HGsapd-----ia 300 (364)
+|+++|++||+||||||++|++| ||||+|||||||||++|+++|||||+||+|+|+++ ++|||+|||||| ++
T Consensus 312 ~I~~e~~lIDa~~~~lvk~P~~F-Viv~~NlfGDIlSDl~A~l~GsLGl~pSanig~dg~~~~fEa~HGSapd~~~~~ia 390 (483)
T PLN03065 312 SIWYEHRLIDDMVAYAVKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQK 390 (483)
T ss_pred CceEEeeeHHHHHHHHHhCCCCc-EEEeeccchhhhhHHHHHhcCchhhcccceeCCCCceEEEecCcCcCccccchhcc
Confidence 69999999999999999999999 99999999999999999999999999999999887 599999999999 89
Q ss_pred CCC-CCChhHHHHHHHHHHHhcCc-------HHHHHHHHHHHHHHHHcCccccCCCC----CC-------CCHHHHHHHH
Q psy8787 301 GKD-LANPTALLLSAVMMLRHLDL-------NTHADVIQKAALDTIKEGKYRTGDLG----GK-------AKCSEFTNEI 361 (364)
Q Consensus 301 Gk~-~aNP~a~ils~ammL~~lg~-------~~~a~~i~~Av~~~~~~g~~~T~Dlg----g~-------~~T~e~~~av 361 (364)
||+ +|||+|+|+|++|||+|+|. .++|++|++||.+++++|. +|+||| |. ++|+||+|+|
T Consensus 391 Gk~t~ANPiA~IlA~ammL~hlg~ld~~~~l~~~A~~Le~Av~~tie~G~-~T~DLg~~~~G~~~~~~~~~~T~ef~daV 469 (483)
T PLN03065 391 GQETSTNSIASIFAWTRGLEHRAKLDKNEELLDFVHKLESACIETVESGK-MTKDLAILIHGPKVSREFYLNTEEFIDAV 469 (483)
T ss_pred CCCCCcChHHHHHHHHHHHHHhCCCCccchHHHHHHHHHHHHHHHHHcCC-cccccccccCCCcccCCCCcCHHHHHHHH
Confidence 999 59999999999999999997 6799999999999999996 799996 63 8999999999
Q ss_pred HhC
Q psy8787 362 CSK 364 (364)
Q Consensus 362 ~~~ 364 (364)
+++
T Consensus 470 ~~~ 472 (483)
T PLN03065 470 AQT 472 (483)
T ss_pred HHH
Confidence 863
No 28
>KOG0786|consensus
Probab=100.00 E-value=3.1e-81 Score=573.89 Aligned_cols=318 Identities=26% Similarity=0.445 Sum_probs=290.3
Q ss_pred CCCCCccccCCCCcCHHHHHHHHHHHHhhcC----CCceeEEEEeeeeeecCCCCccccchhHHHHhhhcCEEEEccccc
Q psy8787 41 ISQWSWRGLKVQGLGEFNLYANVRPCRSLEG----YPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVCNSNYATKWFSER 116 (364)
Q Consensus 41 ~~~~~i~~i~GDGIGp~EV~a~~r~Vl~a~g----~~i~~~~vdig~~re~~~G~Y~~lp~etl~~ik~~daiLkGav~~ 116 (364)
...|.|+++||||||| ||++.+..|++.++ +.|+|++..+|..+.+..|. ++|+++++..+++|++|+|++|.
T Consensus 2 ~~~~~i~llpgd~ig~-ev~s~a~~vlq~~~~l~~vefdf~~~~iggaald~~gv--plpeet~~aak~sdavllgaigg 78 (363)
T KOG0786|consen 2 KKRYNITLLPGDGIGP-EVISVAKNVLQKAGSLEGVEFDFEEMPIGGAALDLVGV--PLPEETLTAAKKSDAVLLGAIGG 78 (363)
T ss_pred CCcceEEEcCCCCcCH-HHHHHHHHHHHHhccccceeeccccCcccccchhccCC--CCCHHHHhhhhhcceeEeecccC
Confidence 3578999999999999 99999999999874 68999999999999999996 99999999999999999999951
Q ss_pred ------------c---hhhhcccceeeeeeeccCCCC--CC-----CCCccEEEEccCCCccccCceee-eeCCEEEEEE
Q psy8787 117 ------------G---ASVEFNLYANVRPCRSLEGYP--TL-----YDDVDVVTIRENTEGEYSGIEHE-IVDGVVQSIK 173 (364)
Q Consensus 117 ------------g---LR~~ldlyanvRP~~~~pg~~--~~-----~~~iD~vIvREnteg~Y~g~~~~-~~~~~a~~~~ 173 (364)
+ +|+.|.+|+|+|||...|.+- ++ .+++|++||||.|+|+|+|...+ ..+|++.++.
T Consensus 79 ~kw~~~~lrpe~gll~ir~~lkvfanlrp~~~~~qlvd~s~lk~e~aeg~d~mvvrel~ggiyfge~r~eng~gva~dte 158 (363)
T KOG0786|consen 79 YKWDKNHLRPEMGLLKIRRDLKVFANLRPATVLPQLVDASTLKKEVAEGVDMMVVRELTGGIYFGEPRNENGEGVAFDTE 158 (363)
T ss_pred cccCcCCcChhhhHHHHHHHHHHHhcCCcchhhHhhhccccccHHHhcCcceEEeeeecCceeecCcccCCCcceeeccc
Confidence 2 899999999999999888652 22 36899999999999999997653 3567999999
Q ss_pred EecHHHHHHHHHHHHHHHHhCC-CCceEEEEeCcccccccHHHHHHHHH-HhhcCCCeeEeeEeHHHHHHHHhcCCCCcc
Q psy8787 174 LITEEASSRVAEFAFEYAKTNN-RSKVTAVHKANIMRMSDGLFLRCCRD-AAEKFPEVKFEEKYLDTVCLNMVQDPTQYD 251 (364)
Q Consensus 174 ~~t~~~~eriar~Af~~A~~~~-~~~Vt~v~KaNv~~~~~~lf~~~~~~-va~~yp~i~~~~~~vD~~~~~lv~~P~~fd 251 (364)
+|+-.++.||+|.||+.|++|. ..+++++|||||+. ++.|||+.+.+ ++.|||++++.|++||+++|+||++|.+||
T Consensus 159 ~Ya~~Ev~RIaR~Aa~~A~~~~pp~pl~slDKANVLa-aSrLWRKtV~~~~k~EyP~l~l~hqliDsAAM~Lvk~P~~ln 237 (363)
T KOG0786|consen 159 IYAAHEVDRIARVAAETARKRRPPGPLCSLDKANVLA-ASRLWRKTVTKALKSEYPDLELSHQLIDSAAMQLVKDPKQLN 237 (363)
T ss_pred cccHHHHHHHHHHHHHHHHhhCCCCCccccchhhHHH-HHHHHHHHHHHHHHhhCCCcchhhhhhhHHHHHHhcCchhcC
Confidence 9999999999999999999874 35899999999997 56999999986 567999999999999999999999999999
Q ss_pred -EEEeCCCcchhhhhhhhhccCCCCcccccccC-----CC-ceeEeeccCCCCCccCCCCCChhHHHHHHHHHHHh-cCc
Q psy8787 252 -VLVMPNLYGDILSDMCAGLVGGLGLTPSGNIG-----LN-GALFESVHGTAPDIAGKDLANPTALLLSAVMMLRH-LDL 323 (364)
Q Consensus 252 -Vivt~Nl~GDIlSD~aa~l~G~lGl~psa~ig-----~~-~~~fEp~HGsapdiaGk~~aNP~a~ils~ammL~~-lg~ 323 (364)
+|||.|+||||+||.++.+.||+||.|||+++ +. .++|||+|||||||+||+++||+|+|||++|||+| ||+
T Consensus 238 g~ivT~NiFGDIiSDEASvIpGSlGlLPSASLs~v~~~es~~gL~EPiHGSAPDiagk~kvNPlaTILSAamlLkygLn~ 317 (363)
T KOG0786|consen 238 GTIVTNNIFGDIISDEASVIPGSLGLLPSASLSGVVSEESGPGLFEPIHGSAPDIAGKDKVNPLATILSAAMLLKYGLNE 317 (363)
T ss_pred ceEEeccchhhhhccccccccCccccccchhhcCCcccccCCcccccCCCCCCCcCCCCccChHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999998 33 38999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCCCHHHHHHHHHh
Q psy8787 324 NTHADVIQKAALDTIKEGKYRTGDLGGKAKCSEFTNEICS 363 (364)
Q Consensus 324 ~~~a~~i~~Av~~~~~~g~~~T~Dlgg~~~T~e~~~av~~ 363 (364)
+++|++||.||.+++..|. +|.||||..||.+.+++|.+
T Consensus 318 pkeakaIEdAV~kvLd~G~-rTgDlgg~~st~~~~kav~E 356 (363)
T KOG0786|consen 318 PKEAKAIEDAVVKVLDKGF-RTGDLGGPGSTLVGCKAVGE 356 (363)
T ss_pred hhhHHHHHHHHHHHHhccc-cccccCCCCcchhhHHHHHH
Confidence 9999999999999999996 89999999887777776653
No 29
>COG0538 Icd Isocitrate dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=8.3e-80 Score=592.79 Aligned_cols=333 Identities=35% Similarity=0.493 Sum_probs=305.4
Q ss_pred cceeEeeccchhhhcccccCCCCCCCCccccCCCCcCHHHHHHHHHHHHhhc----C---CCceeEEEEeeeeeecCCCC
Q psy8787 19 VETISYLTLSELISAQYINTPSISQWSWRGLKVQGLGEFNLYANVRPCRSLE----G---YPTLYDDVDVVTIRENTEGE 91 (364)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~i~GDGIGp~EV~a~~r~Vl~a~----g---~~i~~~~vdig~~re~~~G~ 91 (364)
|+||+|. .+.+. + ..+|.|.+++|||||+ |++.++.+|++++ . .+++|.++++|..+++.+|+
T Consensus 3 g~~i~~~-~g~l~---v-----p~~piiP~IegDgiG~-eit~~~~kvi~aav~k~Y~g~~~I~w~e~~aG~ka~d~tg~ 72 (407)
T COG0538 3 GEKITVK-NGKLM---V-----PDKPIIPFIEGDGIGD-EITRAIWKVIDAAVEKAYGGERKIEWKEVDAGEKARDKTGD 72 (407)
T ss_pred CceEEec-CCccc---C-----CCCcccceEecCCCcH-HHHHHHHHHHHHHHHhhcCCcceeEEEEEecchHHHHhhcC
Confidence 8999997 44433 2 3788899999999999 9999999998875 2 68999999999999889997
Q ss_pred ccccchhHHHHhhhcCEEEEcccc----cc-------hhhhcccceeeeeeeccCCCCCCCC---CccEEEEccCCCccc
Q psy8787 92 YSGIEHEIVDGVCNSNYATKWFSE----RG-------ASVEFNLYANVRPCRSLEGYPTLYD---DVDVVTIRENTEGEY 157 (364)
Q Consensus 92 Y~~lp~etl~~ik~~daiLkGav~----~g-------LR~~ldlyanvRP~~~~pg~~~~~~---~iD~vIvREnteg~Y 157 (364)
.+|+++++.++++.+.+|||+. ++ ||+.||||+|+|||+.+||+++|.+ .+|+||+|||||+.|
T Consensus 73 --~lp~etl~aikky~VaIKgpl~TPvg~g~rSlNvtlRq~Ldly~~~rPv~y~~gvPspvk~pe~~dmVIfRenteDiY 150 (407)
T COG0538 73 --QLPIETLEAIKKYGVAIKGPLTTPVGKGWRSLNVTLRQILDLYVFRRPVRYFPGVPSPVKRPEKVDMVIFRENTEDIY 150 (407)
T ss_pred --cCCHHHHHHHHHhCEEeeccccCcccccccCchHHHHHHcCceEeeeeEEecCCCCCCCCCcccCCeEEEeccccchh
Confidence 6999999999999999999982 22 9999999999999999999998864 599999999999999
Q ss_pred cCceeeee-----------------------CCEEEEEEEecHHHHHHHHHHHHHHHHhCCCCceEEEEeCcccccccHH
Q psy8787 158 SGIEHEIV-----------------------DGVVQSIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGL 214 (364)
Q Consensus 158 ~g~~~~~~-----------------------~~~a~~~~~~t~~~~eriar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~l 214 (364)
.|+|+... ++....++.+++++++|++|.||+||.+++|++||++||.||||.|+|-
T Consensus 151 agiE~~~~s~~a~kl~~fl~~e~~~~~i~~pe~~GIgikp~s~~~s~Rlvr~ai~yAi~~~r~~VtlvhKgnImK~teGa 230 (407)
T COG0538 151 AGIEWKAGSPEALKLIFFLEDEMGVKKIRFPEDSGIGIKPISKEGSIRLVRAAIEYAIENKRKSVTLVHKGNIMKFTEGA 230 (407)
T ss_pred heeeeccCCcchhhhhhhhhcccccceEecCCCCceEEEecCchhhHHHHHHHHHHHHHcCCceEEEEecCeeeecccch
Confidence 99987531 1345688999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhc--C-------------CC----eeEeeEeHHHHHHHHhcCCCCccEEEeCCCcchhhhhhhhhccCCCC
Q psy8787 215 FLRCCRDAAEK--F-------------PE----VKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLG 275 (364)
Q Consensus 215 f~~~~~~va~~--y-------------p~----i~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~GDIlSD~aa~l~G~lG 275 (364)
|++|++|||++ | .+ |.++|+++|+|.+|++++|..||||.|+||.||++||.+|+++||||
T Consensus 231 Fkdw~yeva~~~ef~~~~~~~~~~~~~~~~~gkI~~~driaD~mlqQil~r~~eydViA~~NlnGDy~SDa~Aa~vGglG 310 (407)
T COG0538 231 FKDWGYEVAEEEEFGDEVVTGKEKFELKGPKGKIVYKDRIADDMLQQILLRPGEYDVIATKNLNGDYISDALAAQVGGLG 310 (407)
T ss_pred HHHHHHHHHhhhcccccccccchhhhccCcCceEEEehhhHHHHHHHHhcCCCCceEEEeccCCccHHHHHHHHhcCCcc
Confidence 99999999975 2 24 99999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCceeEeeccCCCCCccCCCCCChhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHcCccccCCCC----C-
Q psy8787 276 LTPSGNIGLNGALFESVHGTAPDIAGKDLANPTALLLSAVMMLRHLDLNTHADVIQKAALDTIKEGKYRTGDLG----G- 350 (364)
Q Consensus 276 l~psa~ig~~~~~fEp~HGsapdiaGk~~aNP~a~ils~ammL~~lg~~~~a~~i~~Av~~~~~~g~~~T~Dlg----g- 350 (364)
|+||+|+|+.+++||++|||||+++||+++||+|.|||+.|||+|+||.++|+.|++|+.+++++|+ .|+||. +
T Consensus 311 i~pgani~~~~~~fEA~HGTapk~aG~~~~Np~a~Ils~~~ml~~~Gw~eaa~li~~a~~~ti~~~~-vT~DlArl~~~~ 389 (407)
T COG0538 311 LAPGANIGDGTAEFEATHGTAPKYAGKDSTNPIASILSGTMMLRHRGWLEAADLIEKAVEDTIESGK-VTYDLARLMGGA 389 (407)
T ss_pred ccccceecCceEEEEeccCccccccCcCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCc-eeHHHHHhhCCC
Confidence 9999999988899999999999999999999999999999999999999999999999999999997 699994 4
Q ss_pred --CCCHHHHHHHHHhC
Q psy8787 351 --KAKCSEFTNEICSK 364 (364)
Q Consensus 351 --~~~T~e~~~av~~~ 364 (364)
..+|+||+|+|+++
T Consensus 390 ~~~v~tsEF~d~ii~~ 405 (407)
T COG0538 390 KRYLSTSEFADAIIEN 405 (407)
T ss_pred ccceeHHHHHHHHHHh
Confidence 46999999999874
No 30
>PLN00096 isocitrate dehydrogenase (NADP+); Provisional
Probab=100.00 E-value=1.2e-67 Score=516.43 Aligned_cols=304 Identities=16% Similarity=0.193 Sum_probs=253.7
Q ss_pred cCCCCcCHHHHHHHHHHHHhhcCCCce-eEEEEeeeeeecCCCCccccchhHHHHhhhcCEEEEccc-c-----------
Q psy8787 49 LKVQGLGEFNLYANVRPCRSLEGYPTL-YDDVDVVTIRENTEGEYSGIEHEIVDGVCNSNYATKWFS-E----------- 115 (364)
Q Consensus 49 i~GDGIGp~EV~a~~r~Vl~a~g~~i~-~~~vdig~~re~~~G~Y~~lp~etl~~ik~~daiLkGav-~----------- 115 (364)
+-||.+-. -+|.-++.-|-.+.++++ ++++|+++...+.+.. .+.-++.++++++.+++|+|. +
T Consensus 4 ~~gdemtr-~~~~~i~~~li~p~~d~~~~~y~DL~~~~Rd~T~d--qvt~daa~a~~~~~vgvKcatiTp~~~rv~e~~l 80 (393)
T PLN00096 4 VAGEEMTR-YTMDLILAKWIEPHVDTSAWEFFDLRAKNRDDTED--QVLRDVIEAGARLKAIFKEPTITPTADQVKRLGL 80 (393)
T ss_pred ecchHHHH-HHHHHHHHhhccceeccccceeeccCCccccccCC--cchHHHHHHHHHhCeeeeecccCCCHHHHHhhch
Confidence 56888888 788888887877888995 9999999876555553 577788889999999999997 1
Q ss_pred -------cc-hhhhccc-ceeeeeee--cc-CCCCCCCCCccEEEEccCCCccccCceeee-------------------
Q psy8787 116 -------RG-ASVEFNL-YANVRPCR--SL-EGYPTLYDDVDVVTIRENTEGEYSGIEHEI------------------- 164 (364)
Q Consensus 116 -------~g-LR~~ldl-yanvRP~~--~~-pg~~~~~~~iD~vIvREnteg~Y~g~~~~~------------------- 164 (364)
+| +|+.||. .+.-+|+. .+ ||+.+| ++|-|..-+|.|.. +..+
T Consensus 81 k~~w~sPNgtiR~~l~G~tvfR~pi~~~~i~~~w~kp-----i~i~Rha~gd~y~a-~~~~~~~g~~~~~~~~~~g~~~~ 154 (393)
T PLN00096 81 KKAWGSPNGAMRRGWNGITISRDTIHIDGVELGYKKP-----VFFERHAVGGEYSA-GYKIVGKGTLVTTFVPEEGGKPI 154 (393)
T ss_pred hhhcCCCcHHHHhhcCCceEeeCCEecCCCCCCccCc-----eEEEeeccCCcccc-ceEecCCcEEEEEEEeCCCCCce
Confidence 23 9999999 66666653 33 565543 44555555555543 2211
Q ss_pred ------eC-CEEE-EEEEecHHHHHHHHHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHh-hcC---------
Q psy8787 165 ------VD-GVVQ-SIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAA-EKF--------- 226 (364)
Q Consensus 165 ------~~-~~a~-~~~~~t~~~~eriar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va-~~y--------- 226 (364)
.+ +... -....|.+.++||||+||+||++|+ ++||++||+||||++++||+ +|+|++ ++|
T Consensus 155 ~~~~~~f~~~~gv~~~~~N~~~si~RiAr~AF~~A~~r~-~~Vt~v~KaNILK~tdg~f~-if~eVa~~eyk~~f~~~~~ 232 (393)
T PLN00096 155 VVDDRTITDDLNAVVTYHNPLDNVHHLARIFFGRCLDAG-IVPYVVTKKTVFKWQEPFWE-IMKKVFDEEFKSKFVDKGV 232 (393)
T ss_pred EEEEEecCCCCeEEEEeccCHHHHHHHHHHHHHHHHHhC-CcEEEEeCccccccchHHHH-HHHHHHHHHHhhhhhhccc
Confidence 01 1112 2357899999999999999999986 46999999999999999998 999987 677
Q ss_pred --CCeeEeeEeHHHHHHHHhcCCCCccEEEeCCCcchhhhhhhhhccCCCCcccccccCCC---c--eeEeeccCCCCCc
Q psy8787 227 --PEVKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLN---G--ALFESVHGTAPDI 299 (364)
Q Consensus 227 --p~i~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~GDIlSD~aa~l~G~lGl~psa~ig~~---~--~~fEp~HGsapdi 299 (364)
|+|+++|++||+||||||++|++||||||+|||||||||++|+++|||||+||+|+|++ . ++|||+|||||||
T Consensus 233 ~~p~V~~e~~lIDa~~~qlVk~P~~fdViv~~NlfGDIlSDlaA~l~GsLGl~pSanig~d~dg~~~a~fEp~HGSApdi 312 (393)
T PLN00096 233 MKSGDELVHLLSDAATMKLVVWTDGGFGMAAHNYDGDVLTDELAQVHKSPGFITSNLVGVDENGTLIKEFEASHGTVTDM 312 (393)
T ss_pred CCCceEEEeeeHHHHHHHHHhCcccCCEEEECcccchHHHHHHHHhcCCcccccccccCCccCCccceEEEcCCCChHHh
Confidence 77999999999999999999999999999999999999999999999999999999944 3 8999999999999
Q ss_pred c-----CC-CCCChhHHHHHHHHHHHhc----Cc----HHHHHHHHHHHHHHHHcCccccCCCCC--CCCHHHHHHHHHh
Q psy8787 300 A-----GK-DLANPTALLLSAVMMLRHL----DL----NTHADVIQKAALDTIKEGKYRTGDLGG--KAKCSEFTNEICS 363 (364)
Q Consensus 300 a-----Gk-~~aNP~a~ils~ammL~~l----g~----~~~a~~i~~Av~~~~~~g~~~T~Dlgg--~~~T~e~~~av~~ 363 (364)
+ || ++|||+|+|||++|||+|+ |+ .++|++|++||.+++++|. +|+||+| .++|+||+|+|++
T Consensus 313 ag~~~~Gk~~~ANPiA~IlA~a~mL~~~~~l~g~~~~l~~~A~~Ie~Av~~tie~G~-~T~DL~g~~~~tT~ef~daI~~ 391 (393)
T PLN00096 313 DEARLRGEETSLNPLGMVEGLIGAMNHAADVHGGKERVHPFTAKLRAVIHKLFREGR-GTRDLCGAGGLTTEQFIDAVAE 391 (393)
T ss_pred hhhhhcCCCCccChHHHHHHHHHHHHhhcccCCCchhhHHHHHHHHHHHHHHHhcCC-cCcCCCCCCCCCHHHHHHHHHH
Confidence 9 89 5999999999999999998 66 6699999999999999995 7999955 7899999999987
Q ss_pred C
Q psy8787 364 K 364 (364)
Q Consensus 364 ~ 364 (364)
+
T Consensus 392 ~ 392 (393)
T PLN00096 392 E 392 (393)
T ss_pred h
Confidence 4
No 31
>KOG1526|consensus
Probab=100.00 E-value=2.6e-33 Score=263.33 Aligned_cols=308 Identities=21% Similarity=0.296 Sum_probs=254.0
Q ss_pred cCCCCcCHHHHHHHHHHHHhhcCCCceeEEEEeeeeeecCCCCccccchhHHHHhhhcCEEEEccc-c------------
Q psy8787 49 LKVQGLGEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVCNSNYATKWFS-E------------ 115 (364)
Q Consensus 49 i~GDGIGp~EV~a~~r~Vl~a~g~~i~~~~vdig~~re~~~G~Y~~lp~etl~~ik~~daiLkGav-~------------ 115 (364)
+-||.+-. -||...+.-|-.+-++++..++|+|+...+++.. .+.-++.+.+.++.+++|++. +
T Consensus 24 mdGDEmTR-iIW~~Ik~KLIlPyldldlkyyDLgie~RD~T~D--qVTid~A~A~lky~V~iKCATITPDEaRv~Ef~Lk 100 (422)
T KOG1526|consen 24 MDGDEMTR-IIWKLIKEKLILPYLDLDLKYYDLGIENRDATND--QVTIDAAEAILKYNVGIKCATITPDEARVEEFNLK 100 (422)
T ss_pred ecccHHHH-HHHHHHHhhcccceeeeceeeeecCCcccccccc--eeeHHHHHHHHHhCceeEEeecCCcHHHHHHhhhH
Confidence 78999988 8999998888888889999999999976666664 577788888999999999987 1
Q ss_pred ------cc-hhhhcccceeeeee------eccCCCCCC-----------CCCccEEEEccCC-CccccCce------eee
Q psy8787 116 ------RG-ASVEFNLYANVRPC------RSLEGYPTL-----------YDDVDVVTIRENT-EGEYSGIE------HEI 164 (364)
Q Consensus 116 ------~g-LR~~ldlyanvRP~------~~~pg~~~~-----------~~~iD~vIvREnt-eg~Y~g~~------~~~ 164 (364)
+| +|+.|+..+.-+|+ |..||+..| |+..|+||-...+ +-.|.... ..+
T Consensus 101 kMWkSPNGTIRNILgGTVFREpIi~kniPrlVpgW~kPI~IGRHAfgDQYkatD~vv~~~gkl~l~f~~~dg~~~~~~~V 180 (422)
T KOG1526|consen 101 KMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPIIIGRHAFGDQYKATDFVVPGPGKLELVFTPSDGTQKVTLKV 180 (422)
T ss_pred HHhcCCCcchhhhcCceeeccceecCCcccccCCCccceEEeeccccccceeeeEeecCCCeEEEEEecCCCCcceeEEE
Confidence 23 99999999998896 344677654 4567777654433 22232111 111
Q ss_pred ----eCCEEEEEEEecHHHHHHHHHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhh-cCC------CeeEee
Q psy8787 165 ----VDGVVQSIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAE-KFP------EVKFEE 233 (364)
Q Consensus 165 ----~~~~a~~~~~~t~~~~eriar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~-~yp------~i~~~~ 233 (364)
.+|+ .....+|.+.++-+|+.+|++|.++ +-++++.+|-.++|.+||-|+++|+|+.+ +|. +|.+||
T Consensus 181 ~~f~~~G~-~~~m~~~dds~~~FAhssf~~Al~k-k~pLylsTKNTILKkYDgrFKdiFqeiye~~yk~kfe~~~IwYEH 258 (422)
T KOG1526|consen 181 YDFKGSGV-AAMMYNTDDSIRGFAHSSFQYALQK-KWPLYLSTKNTILKKYDGRFKDIFQEIYEKQYKSKFEALGIWYEH 258 (422)
T ss_pred EecCCCce-eEEEeeccchhhHHHHHHHHHHHHh-cCceeeeccchHHHHhCChHHHHHHHHHHHHHHHHHHhhcchhhh
Confidence 1223 3345678888899999999999997 47999999999999999999999999874 663 699999
Q ss_pred EeHHHHHHHHhcCCCCccEEEeCCCcchhhhhhhhhccCCCCcccccccCCCceeE--eeccCCCCCc-----cCC-CCC
Q psy8787 234 KYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALF--ESVHGTAPDI-----AGK-DLA 305 (364)
Q Consensus 234 ~~vD~~~~~lv~~P~~fdVivt~Nl~GDIlSD~aa~l~G~lGl~psa~ig~~~~~f--Ep~HGsapdi-----aGk-~~a 305 (364)
++||.|.+|++++-+.| |+.|.|+.||+-||+.|+-.|||||..|..+.+++--| |++|||...- .|+ ...
T Consensus 259 RLIDDmVAqa~KS~GGf-vwAcKNYDGDVqSD~vAQg~GSLGlMTSVLv~pdGKT~EaEAAHGTVtRHyr~hqkG~eTST 337 (422)
T KOG1526|consen 259 RLIDDMVAQAMKSEGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTSVLVCPDGKTVEAEAAHGTVTRHYRMHQKGQETST 337 (422)
T ss_pred hhHHHHHHHHHhcCCce-EEEeecCCCchhhhHHHhcccchhhheeEEEcCCCCeeeeeccccchhHHHHHHhcCCCccC
Confidence 99999999999999999 99999999999999999999999999999999998555 5699998763 464 799
Q ss_pred ChhHHHHHHHHHHHhcC-------cHHHHHHHHHHHHHHHHcCccccCCC----CCC------CCHHHHHHHHHh
Q psy8787 306 NPTALLLSAVMMLRHLD-------LNTHADVIQKAALDTIKEGKYRTGDL----GGK------AKCSEFTNEICS 363 (364)
Q Consensus 306 NP~a~ils~ammL~~lg-------~~~~a~~i~~Av~~~~~~g~~~T~Dl----gg~------~~T~e~~~av~~ 363 (364)
||||+|++|.--|.|.| +..+|+.+|+|+..++++|+ .|.|| +|. .+|.||.|+|.+
T Consensus 338 N~IASIFAWtRgl~hR~kLD~n~~l~~F~~~LE~aci~tve~G~-MTKDLal~i~g~~~r~~y~~T~eFidav~~ 411 (422)
T KOG1526|consen 338 NSIASIFAWTRGLAHRAKLDNNEALAKFANALEKACIETVESGK-MTKDLALCIHGKVERSDYLNTEEFIDAVAS 411 (422)
T ss_pred cchHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhcc-chHhHHHHhcCCccccccccHHHHHHHHHH
Confidence 99999999999999954 56899999999999999997 79999 343 589999999975
No 32
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=97.34 E-value=1.8e-05 Score=77.54 Aligned_cols=81 Identities=37% Similarity=0.493 Sum_probs=63.8
Q ss_pred ccceeEeeccchhhhcccccCCCCCCCCccccCCCCcCH-------HHHHHHHHHHHhhcCCCcee-EEEEeeeeeecCC
Q psy8787 18 TVETISYLTLSELISAQYINTPSISQWSWRGLKVQGLGE-------FNLYANVRPCRSLEGYPTLY-DDVDVVTIRENTE 89 (364)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~i~GDGIGp-------~EV~a~~r~Vl~a~g~~i~~-~~vdig~~re~~~ 89 (364)
+|+.+.-.+...+..+|++++++.++|+|...|--.-|. |++|+|+||+....+++-++ ..+|+.++||+++
T Consensus 51 ~G~~lpeetl~~~~~~DaiL~Gavg~P~~~~~~~~~~~~ll~lRk~l~lyANlRP~k~~~~~k~~~~~~~D~viVREnTe 130 (348)
T COG0473 51 HGEPLPEETLESLKKADAILFGAVGGPKWDPLPRPERGLLLALRKELDLYANLRPAKSLPGLKSPLVKGVDIVIVRENTE 130 (348)
T ss_pred cCCCCCHHHHHHHHhCCEEEEcccCCCCCCCCCCcccchHHHHHHhcCceeeeeecccCCCCCCccCCCccEEEEeeCCC
Confidence 455555556667778899999999999887554112211 88999999999988887666 6899999999999
Q ss_pred CCccccchh
Q psy8787 90 GEYSGIEHE 98 (364)
Q Consensus 90 G~Y~~lp~e 98 (364)
|.|++.|..
T Consensus 131 G~Y~G~~~~ 139 (348)
T COG0473 131 GLYFGEEGR 139 (348)
T ss_pred ccccCCCcc
Confidence 999998874
No 33
>KOG0784|consensus
Probab=97.21 E-value=6.1e-05 Score=73.39 Aligned_cols=68 Identities=54% Similarity=0.802 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHhhcCCCceeEEEEeeeeeecCCCCccccchhHHHHhhhc-CEEEEcccccchhhhccc
Q psy8787 57 FNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVCNS-NYATKWFSERGASVEFNL 124 (364)
Q Consensus 57 ~EV~a~~r~Vl~a~g~~i~~~~vdig~~re~~~G~Y~~lp~etl~~ik~~-daiLkGav~~gLR~~ldl 124 (364)
|+||+++..+...+|++.+++.+|+.++||+++|+|++++++.+.++.++ +++.+-...+..|.+||.
T Consensus 128 LDLyanvv~~~slpG~~tRh~~vDiviIRENTEGEYs~LEHE~VpGVVEsLKVvT~~kseRIaryAF~y 196 (375)
T KOG0784|consen 128 LDLYANVVHCKSLPGVKTRHENVDIVIIRENTEGEYSGLEHESVPGVVESLKVVTRFKSERIARYAFEY 196 (375)
T ss_pred hhhhhheeeeeccCCcccccCCccEEEEecCCcccccccccccCcchhheeeeehhhhhHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999998888776 665544444446666665
No 34
>KOG0785|consensus
Probab=96.81 E-value=0.00043 Score=66.84 Aligned_cols=82 Identities=49% Similarity=0.719 Sum_probs=57.8
Q ss_pred eeEeeccchhhhcccccCCCCCCCCccccCCCCcCH-------HHHHHHHHHHHhhcCCCceeEEEEeeeeeecCCCCcc
Q psy8787 21 TISYLTLSELISAQYINTPSISQWSWRGLKVQGLGE-------FNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYS 93 (364)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~p~~~~~~i~~i~GDGIGp-------~EV~a~~r~Vl~a~g~~i~~~~vdig~~re~~~G~Y~ 93 (364)
.|.-.+..++-...+.+.++...|.+. |-+ .+ |.+|+|+|||....|.+..|+++|+..+|||+||+|+
T Consensus 83 ~ip~~~~esl~~nkvgLkGp~~tPi~k---gh~-S~nl~LRK~f~LyANVRPc~SieG~Kt~Y~~vD~V~IRENTEgeYs 158 (365)
T KOG0785|consen 83 AIPDEAVESLRKNKVGLKGPVATPIGK---GHR-SLNLALRKEFGLYANVRPCKSIEGYKTPYDDVDLVIIRENTEGEYS 158 (365)
T ss_pred cCCHHHHHHHHhhcccccCcccCcccc---ccc-cHHHHHHHHhchhccceecccccCCcCCCCCceEEEEecCCccccc
Confidence 343334444433344445555555444 222 22 8899999999999999999999999999999999999
Q ss_pred ccchhHHHHhhhc
Q psy8787 94 GIEHEIVDGVCNS 106 (364)
Q Consensus 94 ~lp~etl~~ik~~ 106 (364)
+++++...++.++
T Consensus 159 giEh~vvpGVvqs 171 (365)
T KOG0785|consen 159 GIEHQVVPGVVQS 171 (365)
T ss_pred cceeeccccHHHH
Confidence 9988765554443
No 35
>PF03971 IDH: Monomeric isocitrate dehydrogenase; InterPro: IPR004436 This family of enzymes catalyses the NADP(+)-dependent oxidative decarboxylation of isocitrate to form 2-oxoglutarate, CO2, and NADPH within the Krebs cycle (1.1.1.42 from EC). Thus this enzyme supplies the cell with a key intermediate in energy metabolism, and precursors for biosynthetic pathways. The activity of this enzyme, which is controlled by phosphorylation, helps regulate carbon flux between the Krebs cycle and the glyoxylate bypass, which is an alternate route that accumulates carbon for biosynthesis when acetate is the sole carbon source for growth []. The phosphorylation state of this enzyme is controlled by isocitrate dehydrogenase kinase/phosphatase. This family has been found in a number of bacterial species including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. The structure of isocitrate dehydrogenase from Azotobacter vinelandii (P16100 from SWISSPROT) has been determined []. This molecule consists of two distinct domains, a small domain and a large domain, with a folding topology similar to that of dimeric isocitrate dehydrogenase from Escherichia coli (P08200 from SWISSPROT). The structure of the large domain repeats a motif observed in the dimeric enzyme. Such a fusional structure by domain duplication enables a single polypeptide chain to form a structure at the catalytic site that is homologous to the dimeric enzyme, the catalytic site of which is located at the interface of two identical subunits.; GO: 0004450 isocitrate dehydrogenase (NADP+) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process; PDB: 1ITW_D 1J1W_A 3MBC_A 2B0T_A.
Probab=96.72 E-value=0.027 Score=58.90 Aligned_cols=246 Identities=17% Similarity=0.243 Sum_probs=129.1
Q ss_pred CCCccccchhHHHHhhhcCE---EEEccccc-c-hhhhcccceeeeeeeccCCCCCCCCCccEEEEccCCCccccCceee
Q psy8787 89 EGEYSGIEHEIVDGVCNSNY---ATKWFSER-G-ASVEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHE 163 (364)
Q Consensus 89 ~G~Y~~lp~etl~~ik~~da---iLkGav~~-g-LR~~ldlyanvRP~~~~pg~~~~~~~iD~vIvREnteg~Y~g~~~~ 163 (364)
.-.|.++=+++++-|+++.+ ...|.+.+ | |-|.-+-|-..--...+| .++ -+.||.++-+ .+ .+|.
T Consensus 375 D~sYA~vYq~~I~~ck~nGafDp~TmGsV~NVGLMAqKAEEYGSHdKTFe~~-----~~G-~v~vvd~~G~-vl--~eh~ 445 (735)
T PF03971_consen 375 DRSYAGVYQAVIDDCKKNGAFDPTTMGSVPNVGLMAQKAEEYGSHDKTFEIP-----ADG-TVRVVDESGE-VL--MEHE 445 (735)
T ss_dssp SCCCHHHHHHHHHHHCCC-S--TTT-----EEE--TTT-GGGG-GGGEEE-S-----SSE-EEEEEETTS--EE--EEEE
T ss_pred CcccHHHHHHHHHHHHHcCCCCcccccCCCchHHhhhhhHHhCCCCcceECC-----CCc-EEEEEeCCCC-EE--EEee
Confidence 44566677788888887644 34444422 2 444333332221111111 111 1223333221 22 3556
Q ss_pred eeCCEEEEEEEecHHHHHHHHHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhhcC--CCeeEeeEe-HHHHH
Q psy8787 164 IVDGVVQSIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKF--PEVKFEEKY-LDTVC 240 (364)
Q Consensus 164 ~~~~~a~~~~~~t~~~~eriar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~y--p~i~~~~~~-vD~~~ 240 (364)
+..|-.+..+-.-...++.+++.|...|+..|-.-|.-.|+.-. -|.-.-+-+++.-++| .++++.-+- +|++-
T Consensus 446 Ve~GDIwRmcq~KD~pI~DWVkLAV~Rar~tg~paiFWLD~~RA---HDa~lI~kV~~yL~~hdt~gldi~Im~P~~A~~ 522 (735)
T PF03971_consen 446 VEAGDIWRMCQTKDAPIRDWVKLAVNRARATGTPAIFWLDENRA---HDAELIKKVEKYLKDHDTSGLDIRIMSPVEATR 522 (735)
T ss_dssp E-TT-EEEEEEE-HHHHHHHHHHHHHHHHHHT--EEEE--TTSH---HHHHHHHHHHHHHTTS--TT--EEEE-HHHHHH
T ss_pred ecCCcchhhhcccCchHHHHHHHHHHHHHhhCCCeEEecCCCCc---cHHHHHHHHHHHHHhcCCCCCceEeeCHHHHHH
Confidence 65665555555445569999999999999987555666665422 2333333334433444 457777776 55555
Q ss_pred HHHhcCCCCcc-EEEeCCCcchhhhhhhhhcc--CC---CCcccccccCCCceeEee-ccCCCCCcc----CCC--CCCh
Q psy8787 241 LNMVQDPTQYD-VLVMPNLYGDILSDMCAGLV--GG---LGLTPSGNIGLNGALFES-VHGTAPDIA----GKD--LANP 307 (364)
Q Consensus 241 ~~lv~~P~~fd-Vivt~Nl~GDIlSD~aa~l~--G~---lGl~psa~ig~~~~~fEp-~HGsapdia----Gk~--~aNP 307 (364)
..|-+=-.+-| +=||.|..=|+|+|+.--|= -| |-+.|=. .++++||. +-||||+.+ -+| .=+.
T Consensus 523 ~sler~r~G~dTISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLm---~GGGLFETGAGGSAPKHVqQf~eEnhLRWDS 599 (735)
T PF03971_consen 523 FSLERIRAGKDTISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLM---NGGGLFETGAGGSAPKHVQQFVEENHLRWDS 599 (735)
T ss_dssp HHHHHHHTT---EEEE-HHHHHHHHHHHHHHHHS-STTSEEEEEBT---TS-EEEES-SS---HHHHHHHCCCS-----T
T ss_pred HHHHHHHcCCCeEEeechHHHhhhcchhhhhhhccchhhhhhhhcc---cCCceeccCCCCCccHHHHHHHHcCcccccc
Confidence 55544445557 66999999999999974331 11 2223322 25699999 889999964 233 6789
Q ss_pred hHHHHHHHHHHHhcCcH-------HHHHHHHHHHHHHHHcCccccCCCC
Q psy8787 308 TALLLSAVMMLRHLDLN-------THADVIQKAALDTIKEGKYRTGDLG 349 (364)
Q Consensus 308 ~a~ils~ammL~~lg~~-------~~a~~i~~Av~~~~~~g~~~T~Dlg 349 (364)
+|-+|+.+--|+||+.. --|+.+.+|+.+.|++++.-.+-.|
T Consensus 600 LGEFlALa~Sle~l~~~~~n~ka~vLa~tLd~At~~~L~n~ksPsRkvg 648 (735)
T PF03971_consen 600 LGEFLALAVSLEHLAQKTGNPKAKVLADTLDAATGKFLENNKSPSRKVG 648 (735)
T ss_dssp HHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHTT-S--SSTT
T ss_pred hhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCCCCccCC
Confidence 99999999999998643 3588899999999999874444443
No 36
>TIGR00178 monomer_idh isocitrate dehydrogenase, NADP-dependent, monomeric type. The monomeric type of isocitrate dehydrogenase has been found so far in a small number of species, including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. It is NADP-specific.
Probab=96.47 E-value=0.089 Score=55.21 Aligned_cols=243 Identities=17% Similarity=0.237 Sum_probs=140.8
Q ss_pred ccccchhHHHHhhhc---CEEEEccccc-c-hhhhcccceeeeeeeccCCCCCCCCCccEEEEccCCCccccCceeeeeC
Q psy8787 92 YSGIEHEIVDGVCNS---NYATKWFSER-G-ASVEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVD 166 (364)
Q Consensus 92 Y~~lp~etl~~ik~~---daiLkGav~~-g-LR~~ldlyanvRP~~~~pg~~~~~~~iD~vIvREnteg~Y~g~~~~~~~ 166 (364)
|.++=+++++-|+++ |....|.+.+ | |-|.-+-|-..- |++ .-+.++. +.||.+ ++..+ .+|.+..
T Consensus 382 YA~vYq~~I~~ck~nGafDp~TmGsV~NVGLMAqKAEEYGSHd--kTF---ei~~~G~-v~Vvd~-~G~vl--~eh~Ve~ 452 (741)
T TIGR00178 382 YAGVYQVVIEDCKQNGAFDPTTMGTVPNVGLMAQKAEEYGSHD--KTF---QIPADGV-VRVVDS-SGEVL--LEQSVEA 452 (741)
T ss_pred chHHHHHHHHHHHhcCCCCcccccCCcchhHhHHHHHHhcCCC--cce---ecCCCce-EEEEeC-CCCEE--EEeeccC
Confidence 333445678888876 5556666643 2 344444443221 111 1112221 223322 22222 2444444
Q ss_pred CEEEEEEEecHHHHHHHHHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhhcC--CCeeEeeEe-HHHHHHHH
Q psy8787 167 GVVQSIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKF--PEVKFEEKY-LDTVCLNM 243 (364)
Q Consensus 167 ~~a~~~~~~t~~~~eriar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~y--p~i~~~~~~-vD~~~~~l 243 (364)
|-.+..+-.-...++.+++.|.+.|+..|-.-|.-.|+.-. -|.-.-+-++..-++| .+++++-+- ++++-..|
T Consensus 453 GDIwRmcq~KD~pI~DWVkLAV~Rar~sg~pavFWLD~~Ra---HDa~lI~kV~~yL~~hdt~gldi~Im~p~~A~~~sl 529 (741)
T TIGR00178 453 GDIWRMCQVKDAPIQDWVKLAVTRARATGTPAVFWLDPARA---HDAQLIKKVETYLKDHDTEGLDIQILSPVEATRFSL 529 (741)
T ss_pred CcchhhhhccCchHHHHHHHHHHHHHhcCCCeEEEeCCCch---hHHHHHHHHHHHHHhcCCCCCceEeeCHHHHHHHHH
Confidence 43322222223458999999999999988655665554421 1222222223333344 366777775 55555555
Q ss_pred hcCCCCcc-EEEeCCCcchhhhhhhhhcc-C-C---CCcccccccCCCceeEee-ccCCCCCcc------CCCCCChhHH
Q psy8787 244 VQDPTQYD-VLVMPNLYGDILSDMCAGLV-G-G---LGLTPSGNIGLNGALFES-VHGTAPDIA------GKDLANPTAL 310 (364)
Q Consensus 244 v~~P~~fd-Vivt~Nl~GDIlSD~aa~l~-G-~---lGl~psa~ig~~~~~fEp-~HGsapdia------Gk~~aNP~a~ 310 (364)
=+=-.+-| +=||.|..=|+|+|+.--|= | | |-+.|=. .++++||. +-||||+.+ |-=.=+.+|-
T Consensus 530 erir~G~dTISVTGNVLRDYLTDLFPILElGTSAKMLSIVPLm---~GGGLFETGAGGSAPKHVqQf~eEnhLRWDSLGE 606 (741)
T TIGR00178 530 ARIRRGEDTISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLM---AGGGLFETGAGGSAPKHVQQFLEENHLRWDSLGE 606 (741)
T ss_pred HHHHcCCCeEEEechhHHhhhcchhhhhhhccchhhhhhhhcc---cCCceecCCCCCCccHHHHHHHHcCcccccchhh
Confidence 44345557 66999999999999874332 1 1 1222322 25699999 889999964 2236788999
Q ss_pred HHHHHHHHHhcCcH-------HHHHHHHHHHHHHHHcCccccCCCC
Q psy8787 311 LLSAVMMLRHLDLN-------THADVIQKAALDTIKEGKYRTGDLG 349 (364)
Q Consensus 311 ils~ammL~~lg~~-------~~a~~i~~Av~~~~~~g~~~T~Dlg 349 (364)
+|+.+--|+||+.. --|+.+.+|+.+.|++++.-.+-.|
T Consensus 607 FlALa~Sle~la~~~~n~ka~vLa~tLd~At~k~L~n~ksPsRkvg 652 (741)
T TIGR00178 607 FLALAASLEHLGNATGNPKALVLADTLDAATGKLLDNNKSPSRKVG 652 (741)
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCCCCcccC
Confidence 99999999998743 2388899999999998874444443
No 37
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional
Probab=95.81 E-value=0.013 Score=57.84 Aligned_cols=133 Identities=23% Similarity=0.198 Sum_probs=74.9
Q ss_pred EecHHHHHHHHHHHHHHHHhCC--CCceEE-EEeCcccccccHHH-HHH-------HHHHhhcCCCeeE-eeEeHHHHHH
Q psy8787 174 LITEEASSRVAEFAFEYAKTNN--RSKVTA-VHKANIMRMSDGLF-LRC-------CRDAAEKFPEVKF-EEKYLDTVCL 241 (364)
Q Consensus 174 ~~t~~~~eriar~Af~~A~~~~--~~~Vt~-v~KaNv~~~~~~lf-~~~-------~~~va~~yp~i~~-~~~~vD~~~~ 241 (364)
.+|.+.+.+.++...+.-++-| +.|+.+ .-..+.-. .|+| +|- .++..++ ++++ -..-.|++-.
T Consensus 177 ~it~e~i~~~i~~~~~~l~~~gi~~PrIaV~gLNPHAGE--~G~~G~EE~~iI~PAi~~~~~~--G~~v~GP~paDt~F~ 252 (326)
T PRK03371 177 TLNTARVETVIGIADTFLKRVGYVKPRIAVAGVNPHAGE--NGLFGDEEIRIVTPAIEAMRAK--GMDVYGPCPPDTVFL 252 (326)
T ss_pred HhCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCCCCCC--CCCCcHHHHHHHHHHHHHHHHC--CCcccCCCCchhhcc
Confidence 4677887777776655444222 233432 22222221 3566 332 2332222 2222 2333566543
Q ss_pred HHhcCCCCccEEEeCCCcchhhhhhhhhccCCCCcccccccCCCc--eeEeeccCCCCCccCCCCCChhHHHHHHHHHH
Q psy8787 242 NMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNG--ALFESVHGTAPDIAGKDLANPTALLLSAVMML 318 (364)
Q Consensus 242 ~lv~~P~~fdVivt~Nl~GDIlSD~aa~l~G~lGl~psa~ig~~~--~~fEp~HGsapdiaGk~~aNP~a~ils~ammL 318 (364)
+-.+ ++||++|+. | -|++--=.-.++.--+.|+--+- ----|-||||-||||||+|||.+|+-|.-+..
T Consensus 253 ~~~~--~~~D~vvaM--Y----HDQGliP~K~l~F~~gVNvTlGLP~iRTS~DHGTAfDIAGkG~A~~~S~~~Ai~lA~ 323 (326)
T PRK03371 253 QAYE--GQYDMVVAM--Y----HDQGHIPLKLLGFYDGVNITAGLPFIRTSADHGTAFDIAWTGKAKSESMAVSIKLAM 323 (326)
T ss_pred cccc--cCCCEEEEc--c----ccccchhheecccccceEEecCCCeeEecCCCCchhhhhcCCcCCHHHHHHHHHHHH
Confidence 3332 679999984 3 24544444555666666664332 22347899999999999999999998876543
No 38
>PRK14025 multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional
Probab=95.68 E-value=0.00044 Score=68.26 Aligned_cols=68 Identities=38% Similarity=0.572 Sum_probs=51.0
Q ss_pred ccchhhhcccccCCCCCCCCccccCCCCcCH----HHHHHHHHHHHhhcCCCceeEEEEeeeeeecCCCCccccchh
Q psy8787 26 TLSELISAQYINTPSISQWSWRGLKVQGLGE----FNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHE 98 (364)
Q Consensus 26 ~~~~~~~~~~~~~p~~~~~~i~~i~GDGIGp----~EV~a~~r~Vl~a~g~~i~~~~vdig~~re~~~G~Y~~lp~e 98 (364)
+...+-.+|+++.++.+.|. .+..-. |++|+|+||+...++++..+.++|+.++||+++|.|++++..
T Consensus 54 ~l~~~~~~da~l~G~vg~p~-----~~~~~~LR~~ldlyanvRP~r~~pg~~~~~~~iD~vivREnteG~Y~g~~~~ 125 (330)
T PRK14025 54 TIEAAKEADAVLFGAAGETA-----ADVIVKLRRILDTYANVRPVKSYKGVKCLYPDIDYVIVRENTEGLYKGIEAE 125 (330)
T ss_pred HHHHHHHCCEEEEccCCCCc-----cchHHHHHHHcCCeEEEEEeecCCCCCCccCCcCEEEEEECCCceecCcccc
Confidence 34444556777777776652 222222 789999999999999877778999999999999999988643
No 39
>PLN00123 isocitrate dehydrogenase (NAD+)
Probab=95.66 E-value=0.00066 Score=67.65 Aligned_cols=69 Identities=35% Similarity=0.495 Sum_probs=52.8
Q ss_pred eccchhhhcccccCCCCCCCCccccCCCCcCH-------HHHHHHHHHHHhhcCCCceeEEEEeeeeeecCCCCccccch
Q psy8787 25 LTLSELISAQYINTPSISQWSWRGLKVQGLGE-------FNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEH 97 (364)
Q Consensus 25 ~~~~~~~~~~~~~~p~~~~~~i~~i~GDGIGp-------~EV~a~~r~Vl~a~g~~i~~~~vdig~~re~~~G~Y~~lp~ 97 (364)
.+...+..+|+++.++.+.|.+. +..++ |++|+|+|||...++++-.+.++|+.++||+++|.|++++.
T Consensus 77 ~~l~~~~~~da~L~Gavg~p~~~----~~~s~~l~LR~~ldLyaNvRP~k~~pg~~~~~~~iD~viVREnteG~Y~g~~~ 152 (360)
T PLN00123 77 EVLESIRRNKVCLKGGLATPVGG----GVSSLNVQLRKELDLFASLVNCFNLPGLPTRHENVDIVVIRENTEGEYSGLEH 152 (360)
T ss_pred HHHHHHHHCCEEEEccccCCCCc----CccchHHHHHHHcCCEEEEEEeecCCCCCCccCCCCEEEEEeCCCceecccee
Confidence 34445566788888888877322 22222 78999999999989988777899999999999999988753
No 40
>PRK08997 isocitrate dehydrogenase; Provisional
Probab=95.66 E-value=0.00071 Score=66.92 Aligned_cols=68 Identities=37% Similarity=0.490 Sum_probs=52.2
Q ss_pred eccchhhhcccccCCCCCCCCccccCCCCcCH-------HHHHHHHHHHHhhcCCCceeEEEEeeeeeecCCCCccccc
Q psy8787 25 LTLSELISAQYINTPSISQWSWRGLKVQGLGE-------FNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIE 96 (364)
Q Consensus 25 ~~~~~~~~~~~~~~p~~~~~~i~~i~GDGIGp-------~EV~a~~r~Vl~a~g~~i~~~~vdig~~re~~~G~Y~~lp 96 (364)
.+...+-.+|+++.++.++|.+. +...+ |++|+|+||+...++++-.++.+|+.++||+++|.|++.+
T Consensus 54 ~~l~~~~~~da~L~Gavg~p~~~----~~~~~~~~LR~~ldlyanvRP~k~~~g~~~~~~~iD~vivREnteG~Y~g~~ 128 (334)
T PRK08997 54 RTLDLIEKNKIALKGPLTTPVGE----GFTSINVTLRKKFDLYANVRPVLSFPGTKARYDNIDIITVRENTEGMYSGEG 128 (334)
T ss_pred HHHHHHHHCCEEEECcccCCCCc----CccchHHHHHHHcCCeEEEeecccCCCCCCccCCcCEEEEEeccCceecCcc
Confidence 34444556788888888877322 12222 8899999999998998877889999999999999998875
No 41
>PRK02746 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=95.62 E-value=0.016 Score=57.57 Aligned_cols=138 Identities=17% Similarity=0.183 Sum_probs=79.9
Q ss_pred EecHHHHHHHHHHHHHHHHh-CC--CCceEEE-EeCcccccccHHH-H-------HHHHHHhhcCCCeeEe-eEeHHHHH
Q psy8787 174 LITEEASSRVAEFAFEYAKT-NN--RSKVTAV-HKANIMRMSDGLF-L-------RCCRDAAEKFPEVKFE-EKYLDTVC 240 (364)
Q Consensus 174 ~~t~~~~eriar~Af~~A~~-~~--~~~Vt~v-~KaNv~~~~~~lf-~-------~~~~~va~~yp~i~~~-~~~vD~~~ 240 (364)
.+|.+.+.+-++.+.+.-++ -| +.|+.+. -....-. .|+| + -..++..++.+++.+. ..-.|++-
T Consensus 180 ~it~~~I~~~i~~~~~~l~~~~gi~~PrIaV~GLNPHAGE--~G~~G~EE~~iI~PAIe~~r~~g~g~~v~GP~paDt~F 257 (345)
T PRK02746 180 TLTPELITSKLDLLIDFLQRDFGIEKPRIAIAGLNPHAGE--QGQLGTEEKDWLIPWLESWRQKNPDIQLLGPIPPDTCW 257 (345)
T ss_pred HhCHHHHHHHHHHHHHHHHHHcCCCCCcEEEEeeCCCCCC--CCCCcHHHHHHHHHHHHHHHhcCCCceeeCCCCchhhc
Confidence 46777777777766654442 12 2344332 1222211 2444 2 2344444443344443 34467765
Q ss_pred HHHhcC------CCCccEEEeCCCcchhhhhhhhhccCCCCcccccccCCCc--eeEeeccCCCCCccCCCCCChhHHHH
Q psy8787 241 LNMVQD------PTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNG--ALFESVHGTAPDIAGKDLANPTALLL 312 (364)
Q Consensus 241 ~~lv~~------P~~fdVivt~Nl~GDIlSD~aa~l~G~lGl~psa~ig~~~--~~fEp~HGsapdiaGk~~aNP~a~il 312 (364)
.+-.+. .+.||++|+. | -|++--=.--++.--+.|+--+- ----|-||||-||||||+|||.+|+-
T Consensus 258 ~~~~~~~~~~~~~~~~D~vvaM--Y----HDQGliP~K~l~F~~gVNvTlGLP~iRTS~DHGTAfDIAGkg~A~~~S~~~ 331 (345)
T PRK02746 258 VSPAQAWYGKGVAEAPDGYLAL--Y----HDQGLIPVKLMAFDRAVNTTIGLPFIRTSPDHGTAFDIAGKGIARPQSMKA 331 (345)
T ss_pred cccccccccccccCCCCEEEEC--c----ccCCChhheeeccCcceEEecCCCeeEeCCCCcchhhhhcCCCCCHHHHHH
Confidence 554442 2579999984 3 25544444555666666764332 22346899999999999999999998
Q ss_pred HHHHHHH
Q psy8787 313 SAVMMLR 319 (364)
Q Consensus 313 s~ammL~ 319 (364)
|.-+..+
T Consensus 332 Ai~lA~~ 338 (345)
T PRK02746 332 AIKLAWE 338 (345)
T ss_pred HHHHHHH
Confidence 8766543
No 42
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed
Probab=95.48 E-value=0.019 Score=56.88 Aligned_cols=135 Identities=19% Similarity=0.187 Sum_probs=76.0
Q ss_pred EecHHHHHHHHHHHHHHHHhCC--CCceEEEEeCcccccccHHH-HH-------HHHHHhhcCCCeeE-eeEeHHHHHHH
Q psy8787 174 LITEEASSRVAEFAFEYAKTNN--RSKVTAVHKANIMRMSDGLF-LR-------CCRDAAEKFPEVKF-EEKYLDTVCLN 242 (364)
Q Consensus 174 ~~t~~~~eriar~Af~~A~~~~--~~~Vt~v~KaNv~~~~~~lf-~~-------~~~~va~~yp~i~~-~~~~vD~~~~~ 242 (364)
.+|.+.+.+.++.+.+.-++.| +.|+.+. =-|-=.--.|+| +| ..++..++ ++.+ -..-.|++-.+
T Consensus 178 ~it~e~i~~~i~~~~~~l~~~gi~~PrIaV~-gLNPHAGE~G~~G~EE~~iI~PAI~~~~~~--G~~v~GP~paDt~F~~ 254 (332)
T PRK00232 178 AITPERLEEVIRILHADLRRKGIAEPRIAVC-GLNPHAGEGGHFGREEIDIIIPALEELRAE--GINLVGPLPADTLFQP 254 (332)
T ss_pred HhCHHHHHHHHHHHHHHHHHhCCCCCcEEEE-eeCCCCCCCCCCCHHHHHHHHHHHHHHHhC--CCCcCCCCCchhhccc
Confidence 4688888888887766555323 2234322 122211012455 22 23333222 2222 23335665444
Q ss_pred HhcCCCCccEEEeCCCcchhhhhhhhhccCCCCcccccccCCCc--eeEeeccCCCCCccCCCCCChhHHHHHHHHHHH
Q psy8787 243 MVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNG--ALFESVHGTAPDIAGKDLANPTALLLSAVMMLR 319 (364)
Q Consensus 243 lv~~P~~fdVivt~Nl~GDIlSD~aa~l~G~lGl~psa~ig~~~--~~fEp~HGsapdiaGk~~aNP~a~ils~ammL~ 319 (364)
-.+ +.||++|+.=- |++--=.--+++--+.|+--+- ----|-||||-||||||+|||.+|+-|.-+..+
T Consensus 255 ~~~--~~~D~vvaMYH------DQGliP~K~l~F~~gVNvTlGLPiiRTS~DHGTAfDIAGkg~A~~~S~~~Ai~lA~~ 325 (332)
T PRK00232 255 AYL--GDADAVLAMYH------DQGLPVLKYLGFGRGVNITLGLPFIRTSVDHGTALDLAGKGIADVGSFITALNLAIR 325 (332)
T ss_pred ccc--CCCCEEEECcc------cccchhheecccCcceEEecCCCeeEeCCCCcchhhhhcCCCCCHHHHHHHHHHHHH
Confidence 333 57999998432 4544444455555666664332 223478999999999999999999988766543
No 43
>PRK03946 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=95.41 E-value=0.021 Score=55.91 Aligned_cols=132 Identities=19% Similarity=0.143 Sum_probs=74.9
Q ss_pred EecHHHHHHHHHHHHHHHHhCCCCceEEE-EeCcccccccHHH-------HHHHHHHhhcCCCeeEe--eEeHHHHHHHH
Q psy8787 174 LITEEASSRVAEFAFEYAKTNNRSKVTAV-HKANIMRMSDGLF-------LRCCRDAAEKFPEVKFE--EKYLDTVCLNM 243 (364)
Q Consensus 174 ~~t~~~~eriar~Af~~A~~~~~~~Vt~v-~KaNv~~~~~~lf-------~~~~~~va~~yp~i~~~--~~~vD~~~~~l 243 (364)
.+|.+.+.+.++...+.- +. .|+.+. -..+.-. .|+| .-..++..++ .++.++ ..-.|++-.+-
T Consensus 158 ~it~~~i~~~i~~~~~~l-~~--PrIaV~gLNPHAGE--~G~~G~EE~iI~PAi~~~~~~-~g~~~~~GP~paDt~F~~~ 231 (307)
T PRK03946 158 LIKVKKLVKFLLDFYKST-KF--KKIGVLGLNPHAGD--NGVIGGEEEEIKKAIKKANQF-LGFEIFFGPLVPDSAFTPN 231 (307)
T ss_pred HhCHHHHHHHHHHHHHHh-cC--CCEEEEeeCCCCCC--CCCCCcchHHHHHHHHHHHHh-cCCCcccCCcCchhhcccc
Confidence 467777777777655533 32 344332 1222211 2344 2233333311 134433 56677765443
Q ss_pred hcCCCCccEEEeCCCcchhhhhhhhhccCCCCcccccccCCCc--eeEeeccCCCCCccCCC-CCChhHHHHHHHHHHH
Q psy8787 244 VQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNG--ALFESVHGTAPDIAGKD-LANPTALLLSAVMMLR 319 (364)
Q Consensus 244 v~~P~~fdVivt~Nl~GDIlSD~aa~l~G~lGl~psa~ig~~~--~~fEp~HGsapdiaGk~-~aNP~a~ils~ammL~ 319 (364)
.+ ..||++|+. | -|++--=.--++.--+.|+--+- ----|.||||-|||||| +|||.+|+-|.-+..+
T Consensus 232 ~~--~~~D~vlaM--Y----HDQGlip~K~l~F~~gVnvTlGLP~iRTSpDHGTAfDIAGkg~~A~~~S~~~Ai~lA~~ 302 (307)
T PRK03946 232 KR--KKFNYYVAM--Y----HDQGLAPLKALYFDESINVSLNLPILRTSVDHGTAFDIAYKNAKANTKSYLNAIKYAIN 302 (307)
T ss_pred cc--cCCCEEEEC--c----cccCchhheeeccCcceEEecCCCEeEecCCCCchhhhcCCCCcCCHHHHHHHHHHHHH
Confidence 33 689999984 3 24544334455555566663322 22347899999999999 9999999987765443
No 44
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=95.41 E-value=0.021 Score=56.63 Aligned_cols=135 Identities=19% Similarity=0.194 Sum_probs=76.8
Q ss_pred EecHHHHHHHHHHHHHHHHh-CC--CCceEEE-EeCcccccccHHH-HH-------HHHHHhhcCCCeeE-eeEeHHHHH
Q psy8787 174 LITEEASSRVAEFAFEYAKT-NN--RSKVTAV-HKANIMRMSDGLF-LR-------CCRDAAEKFPEVKF-EEKYLDTVC 240 (364)
Q Consensus 174 ~~t~~~~eriar~Af~~A~~-~~--~~~Vt~v-~KaNv~~~~~~lf-~~-------~~~~va~~yp~i~~-~~~~vD~~~ 240 (364)
.+|.+.+.+.++.+.+.-++ -| +.|+.+. -..+.-. .|+| +| ..++..++ ++.+ -..-.|++-
T Consensus 182 ~it~e~i~~~i~l~~~~l~~~~gi~~PrIaV~GLNPHAGE--~G~~G~EE~~iI~PAI~~~~~~--Gi~v~GP~paDt~F 257 (336)
T PRK05312 182 ALTPELIVATARITAADLRRRFGIASPRLAVAGLNPHAGE--GGALGREDIDIIAPAIEQLRAE--GIDARGPLPADTMF 257 (336)
T ss_pred HhCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeeCCCCCC--CCCCcHHHHHHHHHHHHHHHHC--CCCccCCCCchhhc
Confidence 46888888888877775552 22 2344322 1222221 2555 32 33333333 2211 233356654
Q ss_pred HHHhcCCCCccEEEeCCCcchhhhhhhhhccCCCCcccccccCCCc--eeEeeccCCCCCccCCCCCChhHHHHHHHHHH
Q psy8787 241 LNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNG--ALFESVHGTAPDIAGKDLANPTALLLSAVMML 318 (364)
Q Consensus 241 ~~lv~~P~~fdVivt~Nl~GDIlSD~aa~l~G~lGl~psa~ig~~~--~~fEp~HGsapdiaGk~~aNP~a~ils~ammL 318 (364)
.+-.. ..||++|+. | -|++---.--++.--+.|+--+- ----|-||||-||||||+|||.+|+-|.-+..
T Consensus 258 ~~~~~--~~~D~vvaM--Y----HDQGliP~K~l~F~~gVNvTlGLP~iRTSvDHGTAfDIAGkg~A~~~S~~~Ai~lA~ 329 (336)
T PRK05312 258 HAAAR--ATYDAAICM--Y----HDQALIPIKTLDFDGGVNVTLGLPFIRTSPDHGTAFDIAGKGIARPDSLIAALRLAA 329 (336)
T ss_pred ccccc--cCCCEEEEc--c----cccCChhheecccCcceEEecCCCeeEeCCCCcchhhhhcCCCCCHHHHHHHHHHHH
Confidence 44322 579999984 3 24544444455555566664332 22246899999999999999999998877654
Q ss_pred Hh
Q psy8787 319 RH 320 (364)
Q Consensus 319 ~~ 320 (364)
+.
T Consensus 330 ~~ 331 (336)
T PRK05312 330 QM 331 (336)
T ss_pred HH
Confidence 43
No 45
>PRK00772 3-isopropylmalate dehydrogenase; Provisional
Probab=95.40 E-value=0.001 Score=66.47 Aligned_cols=72 Identities=26% Similarity=0.394 Sum_probs=53.6
Q ss_pred ccchhhhcccccCCCCCCCCccccCCCCcCH---------HHHHHHHHHHHhhcCCCc--ee-----EEEEeeeeeecCC
Q psy8787 26 TLSELISAQYINTPSISQWSWRGLKVQGLGE---------FNLYANVRPCRSLEGYPT--LY-----DDVDVVTIRENTE 89 (364)
Q Consensus 26 ~~~~~~~~~~~~~p~~~~~~i~~i~GDGIGp---------~EV~a~~r~Vl~a~g~~i--~~-----~~vdig~~re~~~ 89 (364)
+...+-.+|+++.++.+.|++...|.+..+. |++|+|+||+...++++- .+ .++|+.++|||++
T Consensus 59 tl~~~~~~da~L~Gav~~p~~~~~~~~~~~~~~~~~LR~~ldlyanvRP~r~~pg~~~~~plk~~~~~~iD~vivREntE 138 (358)
T PRK00772 59 TLEACRAADAVLLGAVGGPKWDNLPPDVRPERGLLALRKELGLFANLRPAKLYPGLADASPLKPEIVAGLDILIVRELTG 138 (358)
T ss_pred HHHHHHHCCEEEECccCCCCCCCCCccCCChhhHHHHHHHcCCeEEEeEeecCCCCCCcCCCcccccCCccEEEEecccC
Confidence 4444556788888889888876554433331 889999999988888653 22 3799999999999
Q ss_pred CCccccch
Q psy8787 90 GEYSGIEH 97 (364)
Q Consensus 90 G~Y~~lp~ 97 (364)
|.|++++.
T Consensus 139 G~Y~g~~~ 146 (358)
T PRK00772 139 GIYFGEPR 146 (358)
T ss_pred CeecCCcc
Confidence 99988753
No 46
>PF04166 PdxA: Pyridoxal phosphate biosynthetic protein PdxA; InterPro: IPR005255 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents 4-hydroxythreonine-4-phosphate dehydrogenase (PdxA, 1.1.1.262 from EC). PdxA takes part in vitamin B6 biosynthesis, forming pyridoxine 5'-phosphate from 4-(phosphohydroxy)-L-threonine and 1-deoxy-D-xylulose-5-phosphate.; GO: 0050570 4-hydroxythreonine-4-phosphate dehydrogenase activity, 0051287 NAD binding, 0008615 pyridoxine biosynthetic process, 0055114 oxidation-reduction process; PDB: 1YXO_A 1PS6_A 1PS7_C 1PTM_B 1R8K_B 2HI1_A 3LXY_A 3TSN_B.
Probab=95.38 E-value=0.012 Score=57.56 Aligned_cols=132 Identities=24% Similarity=0.243 Sum_probs=67.5
Q ss_pred EecHHHHHHHHHHHHHHHHh-CC--CCceEEEEeCcccccccHHHH--------HHHHHHhhcCCCeeEe-eEeHHHHHH
Q psy8787 174 LITEEASSRVAEFAFEYAKT-NN--RSKVTAVHKANIMRMSDGLFL--------RCCRDAAEKFPEVKFE-EKYLDTVCL 241 (364)
Q Consensus 174 ~~t~~~~eriar~Af~~A~~-~~--~~~Vt~v~KaNv~~~~~~lf~--------~~~~~va~~yp~i~~~-~~~vD~~~~ 241 (364)
.+|.+.+.+.++...+.-++ -| +.|+.+ -=-|-=.--.|+|= -..++..+ .++.+. ..-.|++-.
T Consensus 151 ~it~~~i~~~i~~~~~~l~~~~gi~~PrIaV-~gLNPHaGe~G~~G~EE~~~I~PAI~~~~~--~gi~v~GP~paDt~F~ 227 (298)
T PF04166_consen 151 LITKERILEKIRLLHKSLKRDFGIENPRIAV-AGLNPHAGEGGLFGREEIEIIIPAIEEARA--EGIDVFGPYPADTVFG 227 (298)
T ss_dssp H--HHHHHHHHHHHHHHHHHTTT-SS-EEEE-E-SSGGGGTTTTTBSHHHHTHHHHHHHHHH--TTHEEEEEE-HHHHTS
T ss_pred hcCHHHHHHHHHHHHHHHHHhcCCCCCcEEE-EEeCCCCCCCCCCcHhHHHHHHHHHHHHHh--CCCceECCCccHHhhh
Confidence 46777777777766554444 22 233433 22232211124443 22233222 345443 334676644
Q ss_pred HHhcCCCCccEEEeCCCcchhhhhhhhhccCCCCcccccccCCCc--eeEeeccCCCCCccCCCCCChhHHHHHHHH
Q psy8787 242 NMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNG--ALFESVHGTAPDIAGKDLANPTALLLSAVM 316 (364)
Q Consensus 242 ~lv~~P~~fdVivt~Nl~GDIlSD~aa~l~G~lGl~psa~ig~~~--~~fEp~HGsapdiaGk~~aNP~a~ils~am 316 (364)
+- .-++||++|+. | -|++--=.--++.--+.|+--+- ----|.||||-||||||+|||.+|+-|.-+
T Consensus 228 ~~--~~~~fD~vvaM--Y----HDQGlip~K~l~f~~gVnvTlGLP~iRTS~DHGTAfDIAGkg~A~~~s~~~Ai~~ 296 (298)
T PF04166_consen 228 KA--NRGKFDAVVAM--Y----HDQGLIPFKLLGFDEGVNVTLGLPIIRTSPDHGTAFDIAGKGIADPSSMIEAIKL 296 (298)
T ss_dssp HH--HHTT-SEEEES--S----HHHHHHHHHHHCTTTSEEEEESSSSEEEEESS-S-CCGTTTTTS-THHHHHHHHH
T ss_pred cc--hhccCCEEEEe--e----cccCccceeecccccceEEecCCCeeeecCCCCchhhhhCCCCCChHHHHHHHHH
Confidence 33 35789999984 4 24543333344444555653222 334579999999999999999999987654
No 47
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=95.37 E-value=0.021 Score=56.51 Aligned_cols=135 Identities=19% Similarity=0.144 Sum_probs=78.2
Q ss_pred EecHHHHHHHHHHHHHHHHhCC--CCceEE-EEeCcccccccHHH-HH-------HHHHHhhcCCCeeE-eeEeHHHHHH
Q psy8787 174 LITEEASSRVAEFAFEYAKTNN--RSKVTA-VHKANIMRMSDGLF-LR-------CCRDAAEKFPEVKF-EEKYLDTVCL 241 (364)
Q Consensus 174 ~~t~~~~eriar~Af~~A~~~~--~~~Vt~-v~KaNv~~~~~~lf-~~-------~~~~va~~yp~i~~-~~~~vD~~~~ 241 (364)
.+|.+.+.+.++.+.+.-++-+ +.|+.+ .-..+.-. .|+| +| ..++..++ ++++ -.+-.|++-.
T Consensus 178 ~it~e~i~~~i~~~~~~l~~~gi~~PrIaV~GLNPHAGE--~G~~G~EE~~iI~PAI~~~~~~--g~~v~GP~paDt~F~ 253 (332)
T PRK03743 178 YVTKERVLDYIQRCTKALEKLGIKNPKIAVAGLNPHSGE--HGLFGDEEVDEIIPAVEAAQEM--GINVEGPVPADSVFH 253 (332)
T ss_pred HhCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCCCCCC--CCCCcHHHHHHHHHHHHHHHHC--CCcccCCCCchhhcc
Confidence 4688888888887777555322 234432 22222221 2555 22 23333222 2222 2334666544
Q ss_pred HHhcCCCCccEEEeCCCcchhhhhhhhhccCCCCcccccccCCCc--eeEeeccCCCCCccCCCCCChhHHHHHHHHHHH
Q psy8787 242 NMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNG--ALFESVHGTAPDIAGKDLANPTALLLSAVMMLR 319 (364)
Q Consensus 242 ~lv~~P~~fdVivt~Nl~GDIlSD~aa~l~G~lGl~psa~ig~~~--~~fEp~HGsapdiaGk~~aNP~a~ils~ammL~ 319 (364)
+-.+ +.||++|+. | -|++--=.--++.--+.|+--+- ----|-||||-||||||+|||.+|+-|.-+..+
T Consensus 254 ~~~~--~~~D~vvaM--Y----HDQGliP~K~l~F~~gVNvTlGLP~iRTS~DHGTAfDIAGkg~A~~~S~~~Ai~lA~~ 325 (332)
T PRK03743 254 LALQ--GRYDAVLSL--Y----HDQGHIATKTLDFERTIAITNGLPFLRTSVDHGTAFDIAGTGKASSVSMEEAILLAAK 325 (332)
T ss_pred cccc--cCCCEEEEc--c----cccCChhheecccCCceEEecCCCeeEeCCCCcchhhhhcCCCCCHHHHHHHHHHHHH
Confidence 4333 579999984 3 25544444555666666664332 223478999999999999999999988776544
Q ss_pred h
Q psy8787 320 H 320 (364)
Q Consensus 320 ~ 320 (364)
.
T Consensus 326 ~ 326 (332)
T PRK03743 326 Y 326 (332)
T ss_pred H
Confidence 3
No 48
>PLN00118 isocitrate dehydrogenase (NAD+)
Probab=95.35 E-value=0.0014 Score=65.67 Aligned_cols=67 Identities=51% Similarity=0.693 Sum_probs=50.0
Q ss_pred cchhhhcccccCCCCCCCCccccCCCCcCH-------HHHHHHHHHHHhhcCCCceeEEEEeeeeeecCCCCccccch
Q psy8787 27 LSELISAQYINTPSISQWSWRGLKVQGLGE-------FNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEH 97 (364)
Q Consensus 27 ~~~~~~~~~~~~p~~~~~~i~~i~GDGIGp-------~EV~a~~r~Vl~a~g~~i~~~~vdig~~re~~~G~Y~~lp~ 97 (364)
...+..+|+++.++.++|.- .+..++ |++|+|+|||...++++-.+..+|+.++||+++|.|++.+.
T Consensus 95 l~~~~~~da~L~G~i~~p~~----~~~~s~~~~LRk~ldLyaNvRPvr~~pg~~~~~~~iD~vIVREnteG~Y~g~~~ 168 (372)
T PLN00118 95 LESVRRNKVGLKGPMATPIG----KGHRSLNLTLRKELGLYANVRPCYSLPGYKTRYDDVDLVTIRENTEGEYSGLEH 168 (372)
T ss_pred HHHHHHCCEEEECCccCCcc----ccccCchHHHHHHcCCeeeecccccCCCccCcccCceEEEEEecCCCcccceee
Confidence 33445567777777766521 112221 88999999999999988778899999999999999988754
No 49
>PRK03437 3-isopropylmalate dehydrogenase; Provisional
Probab=95.23 E-value=0.001 Score=66.05 Aligned_cols=78 Identities=32% Similarity=0.430 Sum_probs=55.4
Q ss_pred cceeEeeccchhhhcccccCCCCCCCCccc-cCCCC-cCH----HHHHHHHHHHHhhcCCCcee---EEEEeeeeeecCC
Q psy8787 19 VETISYLTLSELISAQYINTPSISQWSWRG-LKVQG-LGE----FNLYANVRPCRSLEGYPTLY---DDVDVVTIRENTE 89 (364)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~-i~GDG-IGp----~EV~a~~r~Vl~a~g~~i~~---~~vdig~~re~~~ 89 (364)
|+.+.=.+...+.++|+++.++.++|++.. .+..+ +-. |++|+|+||+...++++..+ .++|+.++||+++
T Consensus 53 G~~lp~~tl~~~~~~da~L~Gavg~p~~~~~~~~~~~~~~LRk~ldLyaNvRP~r~~pg~~sp~k~~~~iD~vivREnte 132 (344)
T PRK03437 53 GETLPDSVLAELRQHDAILLGAIGDPSVPSGVLERGLLLKLRFALDHYVNLRPSKLYPGVTSPLAGPGDIDFVVVREGTE 132 (344)
T ss_pred CCcCCHHHHHHHHHCCEEEEeecCCCCCCCCCcccchHHHHHHHcCCeEEEEEeecCCCCCCcCCCCCCCCEEEEEECCC
Confidence 444444455566677888888888886321 01112 111 78999999998888876554 6899999999999
Q ss_pred CCccccc
Q psy8787 90 GEYSGIE 96 (364)
Q Consensus 90 G~Y~~lp 96 (364)
|.|++.+
T Consensus 133 G~Y~g~~ 139 (344)
T PRK03437 133 GPYTGNG 139 (344)
T ss_pred ccccCCc
Confidence 9998875
No 50
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=95.22 E-value=0.026 Score=55.88 Aligned_cols=135 Identities=13% Similarity=0.104 Sum_probs=78.9
Q ss_pred EecHHHHHHHHHHHHHHHHhC-C--CCceEEE-EeCcccccccHHH-HH-------HHHHHhhcCCCeeE-eeEeHHHHH
Q psy8787 174 LITEEASSRVAEFAFEYAKTN-N--RSKVTAV-HKANIMRMSDGLF-LR-------CCRDAAEKFPEVKF-EEKYLDTVC 240 (364)
Q Consensus 174 ~~t~~~~eriar~Af~~A~~~-~--~~~Vt~v-~KaNv~~~~~~lf-~~-------~~~~va~~yp~i~~-~~~~vD~~~ 240 (364)
.+|.+.+.+.++...+.-++. | +.|+.+. -..+.-. .|+| +| ..++..++ ++.+ -..-.|++-
T Consensus 173 ~it~e~i~~~i~l~~~~l~~~~gi~~PrIaV~GLNPHAGE--~G~~G~EE~~iI~PAi~~~~~~--Gi~v~GP~paDt~F 248 (329)
T PRK01909 173 ALTIDGLVETLAIIDRDLRRDFGLAAPRILVTGLNPHAGE--NGYLGREEIDVIEPALARARAA--GIDARGPYPADTLF 248 (329)
T ss_pred HhCHHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCCCCCC--CCCCcHHHHHHHHHHHHHHHHC--CCCccCCCCchhhc
Confidence 478888888888877765522 2 2344332 2222221 3566 33 22222222 2221 234466665
Q ss_pred HHHhcCCCCccEEEeCCCcchhhhhhhhhccCCCCcccccccCCCc--eeEeeccCCCCCccCCCCCChhHHHHHHHHHH
Q psy8787 241 LNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNG--ALFESVHGTAPDIAGKDLANPTALLLSAVMML 318 (364)
Q Consensus 241 ~~lv~~P~~fdVivt~Nl~GDIlSD~aa~l~G~lGl~psa~ig~~~--~~fEp~HGsapdiaGk~~aNP~a~ils~ammL 318 (364)
.+-.+ +.||++|+. | -|++---.--++.--+.|+--+- ----|-||||-||||||+|||.+|+-|.-+..
T Consensus 249 ~~~~~--~~~D~vvaM--Y----HDQGliP~K~l~F~~gVNvTlGLP~iRTSvDHGTAfDIAGkg~A~~~S~~~Ai~lA~ 320 (329)
T PRK01909 249 QPRYL--EDADCVLAM--F----HDQGLPVLKYATFGEGINVTLGLPIIRTSVDHGTALDLAGTGRADPGSMIAAIDTAV 320 (329)
T ss_pred ccccc--cCCCEEEEc--c----ccccchhheecccCcceEEecCCCeeEeCCCCcchhhhhcCCCCCHHHHHHHHHHHH
Confidence 44443 579999984 3 25554444555666666664332 22346899999999999999999998876644
Q ss_pred Hh
Q psy8787 319 RH 320 (364)
Q Consensus 319 ~~ 320 (364)
+.
T Consensus 321 ~~ 322 (329)
T PRK01909 321 TM 322 (329)
T ss_pred HH
Confidence 43
No 51
>TIGR00557 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase. This model represents PdxA, an NAD+-dependent 4-hydroxythreonine 4-phosphate dehydrogenase (EC 1.1.1.262) active in pyridoxal phosphate biosynthesis.
Probab=95.18 E-value=0.027 Score=55.54 Aligned_cols=133 Identities=20% Similarity=0.221 Sum_probs=75.4
Q ss_pred EecHHHHHHHHHHHHHHHHhC-C--CCceEEE-EeCcccccccHHH-HH-------HHHHHhhcCCCeeE-eeEeHHHHH
Q psy8787 174 LITEEASSRVAEFAFEYAKTN-N--RSKVTAV-HKANIMRMSDGLF-LR-------CCRDAAEKFPEVKF-EEKYLDTVC 240 (364)
Q Consensus 174 ~~t~~~~eriar~Af~~A~~~-~--~~~Vt~v-~KaNv~~~~~~lf-~~-------~~~~va~~yp~i~~-~~~~vD~~~ 240 (364)
.+|.+.+.+-++.+.+.-++. | +.|+.+. -..+.-. .|+| +| ..++..++ ++.+ -..-.|++-
T Consensus 170 ~it~~~i~~~i~~~~~~l~~~~gi~~PrIaV~gLNPHAGE--~G~~G~EE~~iI~PAI~~~~~~--G~~v~GP~paDt~F 245 (320)
T TIGR00557 170 ALTPELLVEKLRILHADLRRDFGIARPRIAVAGLNPHAGE--GGHLGREEIDIIIPALEALRAE--GIDLIGPLPADTLF 245 (320)
T ss_pred HhCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCCCC--CCCCcHHHHHHHHHHHHHHHHC--CCcccCCCCchhhc
Confidence 468888888888777766532 2 2344322 2222221 2455 22 23333333 2222 233355554
Q ss_pred HHHhcCCCCccEEEeCCCcchhhhhhhhhccCCCCcccccccCCCc--eeEeeccCCCCCccCCCCCChhHHHHHHHHHH
Q psy8787 241 LNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNG--ALFESVHGTAPDIAGKDLANPTALLLSAVMML 318 (364)
Q Consensus 241 ~~lv~~P~~fdVivt~Nl~GDIlSD~aa~l~G~lGl~psa~ig~~~--~~fEp~HGsapdiaGk~~aNP~a~ils~ammL 318 (364)
.+-. -++||++|+. | -|++--=.--++.--+.|+--+- ----|-||||-||||||+|||.+|+-|.-+..
T Consensus 246 ~~~~--~~~~D~vvaM--Y----HDQGliP~K~l~F~~gVNvTlGLPiiRTS~DHGTAfDIAGkg~A~~~S~~~Ai~~A~ 317 (320)
T TIGR00557 246 HPAA--LAKYDAVLAM--Y----HDQGLIPLKYLGFDEGVNVTLGLPFIRTSPDHGTAFDIAGKGKADPGSLIAAIKLAI 317 (320)
T ss_pred cccc--ccCCCEEEEC--c----ccccchhheecccCcceEEecCCCeeEeCCCCcchhhhhcCCCCCHHHHHHHHHHHH
Confidence 4322 2679999984 3 24544444455555666664332 22346899999999999999999988776543
No 52
>PRK08194 tartrate dehydrogenase; Provisional
Probab=94.87 E-value=0.0015 Score=65.06 Aligned_cols=68 Identities=28% Similarity=0.441 Sum_probs=50.3
Q ss_pred ccchhhhcccccCCCCCCCCccccCCCCcC---H-------HHHHHHHHHHHhhcCCCcee---EEEEeeeeeecCCCCc
Q psy8787 26 TLSELISAQYINTPSISQWSWRGLKVQGLG---E-------FNLYANVRPCRSLEGYPTLY---DDVDVVTIRENTEGEY 92 (364)
Q Consensus 26 ~~~~~~~~~~~~~p~~~~~~i~~i~GDGIG---p-------~EV~a~~r~Vl~a~g~~i~~---~~vdig~~re~~~G~Y 92 (364)
+...+-.+|+++.++.+.|.|. | ++.+ + |++|+|+||+...++++..+ ..+|+.++||+++|.|
T Consensus 61 tl~~~k~~dail~G~vg~p~~~--~-~~~~~~~~~l~LR~~ldLyaNvRP~k~~pg~~splk~~~~iD~vivREnteG~Y 137 (352)
T PRK08194 61 GLEQLKQFDAIFLGAVGNPKLV--P-DHISLWGLLIKIRREFEQVINIRPAKQLRGIKSPLANPKDFDLLVVRENSEGEY 137 (352)
T ss_pred HHHHHHhCCEEEEcccCCCCcC--C-CCCCchhhHHHHHHHcCCEEEEEeeecCCCCCCCCCCCCCCCEEEEEeCCCccc
Confidence 3444556788888888887542 2 2222 1 67899999998888876554 6899999999999999
Q ss_pred cccc
Q psy8787 93 SGIE 96 (364)
Q Consensus 93 ~~lp 96 (364)
+++.
T Consensus 138 ~g~~ 141 (352)
T PRK08194 138 SEVG 141 (352)
T ss_pred cCCC
Confidence 8774
No 53
>COG2838 Icd Monomeric isocitrate dehydrogenase [Energy production and conversion]
Probab=94.73 E-value=0.3 Score=50.42 Aligned_cols=164 Identities=17% Similarity=0.216 Sum_probs=105.2
Q ss_pred EecHHHHHHHHHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhhcC--CCeeEeeEe-HHHHHHHHhcCCCCc
Q psy8787 174 LITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKF--PEVKFEEKY-LDTVCLNMVQDPTQY 250 (364)
Q Consensus 174 ~~t~~~~eriar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~y--p~i~~~~~~-vD~~~~~lv~~P~~f 250 (364)
......+..+++.|.+.|+..+-.-|.-.|.. +..|.-...-++..-+++ .+..+.-+- +.++-..|.+=-.+-
T Consensus 462 q~kdapi~dWVkLaV~RarlS~~pavFWLDp~---Rahd~~li~kV~~yLkdhdt~GldI~Ilsp~ea~~~sl~rl~~G~ 538 (744)
T COG2838 462 QVKDAPIRDWVKLAVTRARLSGMPAVFWLDPY---RAHDKELIKKVEAYLKDHDTNGLDIQILSPVEAMRYSLERLRRGE 538 (744)
T ss_pred hcccchHHHHHHHHHHHHhhcCCceEEEeCcC---ccchHHHHHHHHHHhhhcCCCCcceEEecHHHHHHHHHHHHHcCC
Confidence 34455688999999999998875445444433 222333333333322332 345555553 555555554444555
Q ss_pred c-EEEeCCCcchhhhhhhhhcc-C-C---CCcccccccCCCceeEee-ccCCCCCcc----CCC--CCChhHHHHHHHHH
Q psy8787 251 D-VLVMPNLYGDILSDMCAGLV-G-G---LGLTPSGNIGLNGALFES-VHGTAPDIA----GKD--LANPTALLLSAVMM 317 (364)
Q Consensus 251 d-Vivt~Nl~GDIlSD~aa~l~-G-~---lGl~psa~ig~~~~~fEp-~HGsapdia----Gk~--~aNP~a~ils~amm 317 (364)
| +-||.|..-|+|+|+.--|- | | |.+.|=. .+++|||. +.||||+-. -+| .=+.+|-+|+.+--
T Consensus 539 DtIsvTGNvLRDYlTDLFPIlELGTSAKMLSiVPlm---aGGgmfETGAGGSAPKhVqQ~~eENhLRWDSLGEFLALa~s 615 (744)
T COG2838 539 DTISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLM---AGGGMFETGAGGSAPKHVQQLVEENHLRWDSLGEFLALAAS 615 (744)
T ss_pred ceeEecchHHHHHHhhhhhHhhcccccchheeeeec---cCCceeecCCCCCCcHHHHHHHHhcccchhhHHHHHHHHHH
Confidence 7 55899999999999875432 0 1 1122222 25699998 889999964 233 66789999999999
Q ss_pred HHhcCcH-------HHHHHHHHHHHHHHHcCcc
Q psy8787 318 LRHLDLN-------THADVIQKAALDTIKEGKY 343 (364)
Q Consensus 318 L~~lg~~-------~~a~~i~~Av~~~~~~g~~ 343 (364)
|||+|.. --|+.+..|..+.|.+.+.
T Consensus 616 le~~~~k~gn~kAkvLa~~LD~AtgklLdn~Ks 648 (744)
T COG2838 616 LEHLGNKTGNAKAKVLAKALDAATGKLLDNNKS 648 (744)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9998743 3577888888888887663
No 54
>TIGR02924 ICDH_alpha isocitrate dehydrogenase. This family of mainly alphaproteobacterial enzymes is a member of the isocitrate/isopropylmalate dehydrogenase superfamily described by pfam00180. Every member of the seed of this model appears to have a TCA cycle lacking only a determined isocitrate dehydrogenase. The precise identity of the cofactor (NADH -- 1.1.1.41 vs. NADPH -- 1.1.1.42) is unclear.
Probab=94.42 E-value=0.003 Score=65.00 Aligned_cols=65 Identities=29% Similarity=0.404 Sum_probs=48.4
Q ss_pred hhhhcccccCCCCCCCCccccCCCCcCH-------HHHHHHHHHHHhh-cCCCceeEEEEeeeeeecCCCCccccch
Q psy8787 29 ELISAQYINTPSISQWSWRGLKVQGLGE-------FNLYANVRPCRSL-EGYPTLYDDVDVVTIRENTEGEYSGIEH 97 (364)
Q Consensus 29 ~~~~~~~~~~p~~~~~~i~~i~GDGIGp-------~EV~a~~r~Vl~a-~g~~i~~~~vdig~~re~~~G~Y~~lp~ 97 (364)
.+..+|+.+.++.++|.+. +..+. |++|+|+|||... ++++-.+..+|+.++||+++|.|+++..
T Consensus 57 ~i~~~da~LkG~i~tp~~~----~~~s~~~~LRk~ldLYANvRPv~~~~p~~~~~~~~vDiVIVRENtEGlY~G~e~ 129 (473)
T TIGR02924 57 SIRRTKVLLKAPITTPQGG----GHKSLNVTLRKTLGLYANIRPCVSYHPFIETKSPNLNIVIVRENEEDLYTGIEY 129 (473)
T ss_pred HHHHCCEEEECcccCCCcc----CcccHHHHHHHHcCCeEEEEEeeccCCCCCCccCCcCEEEEEeccCceecCcee
Confidence 3445677777777776422 12221 7899999999887 6777667899999999999999988754
No 55
>COG1995 PdxA Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=94.41 E-value=0.025 Score=55.47 Aligned_cols=62 Identities=32% Similarity=0.386 Sum_probs=42.2
Q ss_pred ccEEEeCCCcchhhhhhhhhccCCCCcccccccCCCc--eeEeeccCCCCCccCCCCCChhHHHHHHHHH
Q psy8787 250 YDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNG--ALFESVHGTAPDIAGKDLANPTALLLSAVMM 317 (364)
Q Consensus 250 fdVivt~Nl~GDIlSD~aa~l~G~lGl~psa~ig~~~--~~fEp~HGsapdiaGk~~aNP~a~ils~amm 317 (364)
+|.+||. |= |++---.-=+|+--+.|+.-+- ----|-||||-||||||||||.+++-|..+.
T Consensus 259 ~DavlaM--YH----DQgliplK~l~Fd~~VNvtlGLPfiRTS~DHGTAfDiAgkGiA~~~S~~~Ai~lA 322 (332)
T COG1995 259 YDAVLAM--YH----DQGLIPLKYLGFDRGVNVTLGLPFIRTSVDHGTAFDIAGKGIADPGSLIAAIKLA 322 (332)
T ss_pred CCEEEEe--ec----cccchhhhhhccccceEEecCCCeeeecCCccchhhhhcCCcCCchHHHHHHHHH
Confidence 5877774 32 4443334445666667775332 2335789999999999999999998776653
No 56
>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases. This family is closely related to both the LeuB genes found in TIGR00169 and the mitochondrial eukaryotic isocitrate dehydratases found in TIGR00175. All of these are included within the broader subfamily model, pfam00180.
Probab=94.30 E-value=0.0022 Score=63.28 Aligned_cols=74 Identities=39% Similarity=0.530 Sum_probs=52.9
Q ss_pred cceeEeeccchhhhcccccCCCCCCCCccccCCCCcCH-------HHHHHHHHHHHhhcCCCceeE-EEEeeeeeecCCC
Q psy8787 19 VETISYLTLSELISAQYINTPSISQWSWRGLKVQGLGE-------FNLYANVRPCRSLEGYPTLYD-DVDVVTIRENTEG 90 (364)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~i~GDGIGp-------~EV~a~~r~Vl~a~g~~i~~~-~vdig~~re~~~G 90 (364)
|+.+.=.+...+..+|+++.++.++|.+. +-.++ |++|+|+||+...++++-.+. ++|+.++||+++|
T Consensus 44 G~~lp~~~l~~~~~~da~l~Gavg~p~~~----~~~s~~~~LR~~ldlyanvRP~r~~~g~~~~~~~~iD~vivREnteG 119 (322)
T TIGR02088 44 GSALPEDTLEEIRKADAILFGAVTTPANP----GYKSVIVTLRKELDLYANVRPAKSLPGIPDLYPNGKDIVIVRENTEG 119 (322)
T ss_pred CCCCCHHHHHHHHHCCEEEECcccCCCCC----CccChHHHHHHHcCCEEEEEEeeccCCCCCCCCCCCCEEEEEeCcCC
Confidence 43343344555566788888888887532 11221 788999999988888766554 8999999999999
Q ss_pred Cccccc
Q psy8787 91 EYSGIE 96 (364)
Q Consensus 91 ~Y~~lp 96 (364)
.|++..
T Consensus 120 ~Y~g~~ 125 (322)
T TIGR02088 120 LYAGFE 125 (322)
T ss_pred eeeccc
Confidence 998874
No 57
>TIGR00169 leuB 3-isopropylmalate dehydrogenase. This model will not find all isopropylmalate dehydrogenases; the enzyme from Sulfolobus sp. strain 7 is more similar to mitochondrial NAD-dependent isocitrate dehydrogenases than to other known isopropylmalate dehydrogenases and was omitted to improve the specificity of the model. It scores below the cutoff and below some enzymes known not to be isopropylmalate dehydrogenase.
Probab=94.23 E-value=0.0024 Score=63.60 Aligned_cols=73 Identities=29% Similarity=0.404 Sum_probs=50.9
Q ss_pred eccchhhhcccccCCCCCCCCccccCCC-----CcC----HHHHHHHHHHHHhhcCCCc--e-----eEEEEeeeeeecC
Q psy8787 25 LTLSELISAQYINTPSISQWSWRGLKVQ-----GLG----EFNLYANVRPCRSLEGYPT--L-----YDDVDVVTIRENT 88 (364)
Q Consensus 25 ~~~~~~~~~~~~~~p~~~~~~i~~i~GD-----GIG----p~EV~a~~r~Vl~a~g~~i--~-----~~~vdig~~re~~ 88 (364)
.+...+-.+|+++.++.+.|++...+.+ ++- .|++|+|+||+...+|++- . .+++|+.++||++
T Consensus 55 ~tl~~~~~~da~l~G~v~~p~~~~~~~~~~~~~~~~~LR~~ldlyanvRP~r~~~g~~~~~p~~~~~~~~iD~vivREnt 134 (349)
T TIGR00169 55 ETLKACKEADAVLLGAVGGPKWDNLPRDQRPEQGLLKLRKSLDLFANLRPAKVFPSLEDLSPLKEEIAKGVDFVVVRELT 134 (349)
T ss_pred HHHHHHHHCCEEEECcccCCCCCCCCccccchhhHHHHHHHcCCeEEEEEeeccCCCCccCCCcccccCCceEEEEeecc
Confidence 3444455678888888888766321111 111 1889999999988887642 2 2689999999999
Q ss_pred CCCccccch
Q psy8787 89 EGEYSGIEH 97 (364)
Q Consensus 89 ~G~Y~~lp~ 97 (364)
+|.|++++.
T Consensus 135 EG~Y~g~~~ 143 (349)
T TIGR00169 135 GGIYFGEPK 143 (349)
T ss_pred CCeecCCCc
Confidence 999988753
No 58
>PRK09222 isocitrate dehydrogenase; Validated
Probab=93.39 E-value=0.0037 Score=64.56 Aligned_cols=66 Identities=36% Similarity=0.430 Sum_probs=49.8
Q ss_pred chhhhcccccCCCCCCCCccccCCCCcCH-------HHHHHHHHHHHhh-cCCCceeEEEEeeeeeecCCCCccccch
Q psy8787 28 SELISAQYINTPSISQWSWRGLKVQGLGE-------FNLYANVRPCRSL-EGYPTLYDDVDVVTIRENTEGEYSGIEH 97 (364)
Q Consensus 28 ~~~~~~~~~~~p~~~~~~i~~i~GDGIGp-------~EV~a~~r~Vl~a-~g~~i~~~~vdig~~re~~~G~Y~~lp~ 97 (364)
..+..+|+++.+++++|.. ++..+. |++|+|+|||... ++++..+.++|+.++||+++|.|+++..
T Consensus 60 ~~i~~~da~LkG~i~tP~~----~~~~s~~~~LRk~ldLYaNvRP~r~~~pgv~~~~~~iD~vIVRENtEG~Y~G~e~ 133 (482)
T PRK09222 60 ESIRRTKVLLKAPITTPQG----GGYKSLNVTLRKTLGLYANVRPCVSYHPFVETKHPNLDVVIIRENEEDLYAGIEH 133 (482)
T ss_pred HHHHHCCEEEEccccCCCc----cCccchHHHHHHHcCCeEEeeeEEecCCCCCCCCCCcCEEEEEeccCCeecccee
Confidence 3345567777777777632 122221 8899999999988 8887777899999999999999988754
No 59
>PRK06451 isocitrate dehydrogenase; Validated
Probab=93.03 E-value=0.0098 Score=60.48 Aligned_cols=78 Identities=23% Similarity=0.405 Sum_probs=53.0
Q ss_pred cceeEeeccchhhhcccccCCCCCCC---CccccCCCCcCHHHHHHHHHHHHhhcCCCcee---EEEEeeeeeecCCCCc
Q psy8787 19 VETISYLTLSELISAQYINTPSISQW---SWRGLKVQGLGEFNLYANVRPCRSLEGYPTLY---DDVDVVTIRENTEGEY 92 (364)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~p~~~~~---~i~~i~GDGIGp~EV~a~~r~Vl~a~g~~i~~---~~vdig~~re~~~G~Y 92 (364)
|+.+.=.+...+-.+|+++.++.++| ++..+...=.-.|++|+|+||+...++++..+ ..+|+.++||+++|.|
T Consensus 76 G~~lp~etl~~ik~~daiL~GavgtP~~~~~~s~~l~LRk~ldLyaNvRPvk~~pgl~sp~~~~~~iD~vIvREnTeG~Y 155 (412)
T PRK06451 76 GNRFPKESEELIEKYRVLLKGPLETPIGKGWKSINVAIRLMLDLYANIRPVKYIPGIESPLKNPEKIDLIIFRENTDDLY 155 (412)
T ss_pred CCcCCHHHHHHHHHCCEEEECcccCCCCcCCcChhHHHHHHcCCeEeeceeecCCCCCCcccCcCCccEEEEEeccCCee
Confidence 43343334444556688888877766 23221111111188999999998888876555 6899999999999999
Q ss_pred cccc
Q psy8787 93 SGIE 96 (364)
Q Consensus 93 ~~lp 96 (364)
++++
T Consensus 156 ~g~~ 159 (412)
T PRK06451 156 RGIE 159 (412)
T ss_pred eccc
Confidence 8875
No 60
>PRK07362 isocitrate dehydrogenase; Validated
Probab=92.97 E-value=0.023 Score=58.19 Aligned_cols=65 Identities=32% Similarity=0.438 Sum_probs=47.6
Q ss_pred hhhhcccccCCCCCCCCccccCCCCcC-------HHHHHHHHHHHHhhcCCCcee---EEEEeeeeeecCCCCccccch
Q psy8787 29 ELISAQYINTPSISQWSWRGLKVQGLG-------EFNLYANVRPCRSLEGYPTLY---DDVDVVTIRENTEGEYSGIEH 97 (364)
Q Consensus 29 ~~~~~~~~~~p~~~~~~i~~i~GDGIG-------p~EV~a~~r~Vl~a~g~~i~~---~~vdig~~re~~~G~Y~~lp~ 97 (364)
.+-.+++.+.++.++|. +++... .|++|+|+|||...++++..+ +.+|+.++||+++|.|++++.
T Consensus 93 ~i~~~da~L~Gpi~tP~----~~g~~s~~l~LRk~ldLyaNvRPvr~~pgl~sp~k~~~~iD~vIvRENTEGlY~G~~~ 167 (474)
T PRK07362 93 AIREYGVAIKGPLTTPI----GGGIRSLNVALRQIFDLYSCVRPCRYYAGTPSPHKNPEKLDVIVYRENTEDIYMGIEW 167 (474)
T ss_pred HHHHCCEEEECcccCCC----CcCccchHHHHHHHcCCceeeeEeeccCCCCCcccCCCCCCEEEEEECCCceeccccc
Confidence 33455677777777662 121122 188999999999888876655 689999999999999998853
No 61
>TIGR00175 mito_nad_idh isocitrate dehydrogenase, NAD-dependent, mitochondrial type. The NADP-dependent IDH of Thermus aquaticus thermophilus strain HB8 resembles these NAD-dependent IDH, except for the residues involved in cofactor specificity, much more closely than it resembles other prokaryotic NADP-dependent IDH, including that of Thermus aquaticus strain YT1.
Probab=92.73 E-value=0.016 Score=57.56 Aligned_cols=73 Identities=37% Similarity=0.504 Sum_probs=53.0
Q ss_pred eeEeeccchhhhcccccCCCCCCCCccccCCCCcCH-------HHHHHHHHHHHhhcCCCceeEEEEeeeeeecCCCCcc
Q psy8787 21 TISYLTLSELISAQYINTPSISQWSWRGLKVQGLGE-------FNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYS 93 (364)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~p~~~~~~i~~i~GDGIGp-------~EV~a~~r~Vl~a~g~~i~~~~vdig~~re~~~G~Y~ 93 (364)
.+.-.+...+.++|+++.++.++|... ++..++ |++|+|+||+...++++-.+.++|+.++||+++|.|+
T Consensus 49 ~lp~~~l~~~~~~da~l~Gav~~p~~~---~~~~s~~~~lR~~ldlyanvRP~k~~pg~~~~~~~iD~vivREnteG~Y~ 125 (333)
T TIGR00175 49 EIPDEAVESIKRNKVALKGPLETPIGK---GGHRSLNVALRKELDLYANVVHCKSLPGFKTRHEDVDIVIIRENTEGEYS 125 (333)
T ss_pred cCCHHHHHHHHHCCEEEEcccCCcccc---ccccchhHHHHHHcCCEEEeEEecCCCCCCCCCCCcCEEEEEEeCCCccc
Confidence 333334444566688887777766211 223332 7899999999998888777789999999999999998
Q ss_pred ccc
Q psy8787 94 GIE 96 (364)
Q Consensus 94 ~lp 96 (364)
+.+
T Consensus 126 g~~ 128 (333)
T TIGR00175 126 GLE 128 (333)
T ss_pred cee
Confidence 874
No 62
>PLN02329 3-isopropylmalate dehydrogenase
Probab=92.42 E-value=0.024 Score=57.54 Aligned_cols=71 Identities=25% Similarity=0.372 Sum_probs=51.0
Q ss_pred ccchhhhcccccCCCCCCCCccccCCC-----CcCH----HHHHHHHHHHHhhcCCCc--e-----eEEEEeeeeeecCC
Q psy8787 26 TLSELISAQYINTPSISQWSWRGLKVQ-----GLGE----FNLYANVRPCRSLEGYPT--L-----YDDVDVVTIRENTE 89 (364)
Q Consensus 26 ~~~~~~~~~~~~~p~~~~~~i~~i~GD-----GIGp----~EV~a~~r~Vl~a~g~~i--~-----~~~vdig~~re~~~ 89 (364)
+...+-.+|+++.++.+.|+|...++. ++-. |++|+|+|||...++++- . .+++|+.++||+++
T Consensus 103 tl~~~~~~DaiL~Gavg~p~~~~~~~~~~~e~~ll~LRk~ldLyaNvRPvr~~pg~~~~splk~~~~~~iD~vIVREnTE 182 (409)
T PLN02329 103 TFTAAKQSDAILLGAIGGYKWDKNEKHLRPEMALFYLRRDLKVFANLRPATVLPQLVDASTLKKEVAEGVDMMIVRELTG 182 (409)
T ss_pred HHHHHHHCCEEEECcccCCCCCCCcccccccccHHHHHHHcCCeEeeeeeeccCCCCCcCcccccccCCceEEEEEECCC
Confidence 334455678999999988876431111 1111 889999999988877542 1 36899999999999
Q ss_pred CCccccc
Q psy8787 90 GEYSGIE 96 (364)
Q Consensus 90 G~Y~~lp 96 (364)
|.|++.+
T Consensus 183 G~Y~G~~ 189 (409)
T PLN02329 183 GIYFGEP 189 (409)
T ss_pred CeecCCC
Confidence 9998875
No 63
>TIGR02089 TTC tartrate dehydrogenase. Tartrate dehydrogenase catalyzes the oxidation of both meso- and (+)-tartrate as well as a D-malate. These enzymes are closely related to the 3-isopropylmalate and isohomocitrate dehydrogenases found in TIGR00169 and TIGR02088, respectively.
Probab=91.87 E-value=0.021 Score=57.11 Aligned_cols=69 Identities=35% Similarity=0.486 Sum_probs=49.8
Q ss_pred eccchhhhcccccCCCCCCCCccccCCCCcCH----------HHHHHHHHHHHhhcCCCcee-----EEEEeeeeeecCC
Q psy8787 25 LTLSELISAQYINTPSISQWSWRGLKVQGLGE----------FNLYANVRPCRSLEGYPTLY-----DDVDVVTIRENTE 89 (364)
Q Consensus 25 ~~~~~~~~~~~~~~p~~~~~~i~~i~GDGIGp----------~EV~a~~r~Vl~a~g~~i~~-----~~vdig~~re~~~ 89 (364)
.+...+-++|+++.++.+.|.+ .|+ +.++ |++|+|+||+...++++..+ ..+|+.++||+++
T Consensus 60 ~tl~~~k~~da~L~G~vg~p~~--~~~-~~~~~~~~l~LRk~ldLyaNvRP~~~~~g~~sp~k~~~~~~iD~vivREnte 136 (352)
T TIGR02089 60 DGLEKLKKFDAIFLGAVGWPAL--VPD-HISLWGLLLKIRREFDQYANVRPAKLLPGVTSPLRNCGPGDFDFVVVRENSE 136 (352)
T ss_pred HHHHHHHhCCEEEEecccCCCC--CCC-ccCchhhHHHHHHHcCCeEEEEEeecCCCCCCccccccCCCCCEEEEEecCC
Confidence 3444455678888888887742 221 2232 78899999998888765443 5799999999999
Q ss_pred CCccccc
Q psy8787 90 GEYSGIE 96 (364)
Q Consensus 90 G~Y~~lp 96 (364)
|.|++..
T Consensus 137 G~Y~G~~ 143 (352)
T TIGR02089 137 GEYSGVG 143 (352)
T ss_pred ccccccc
Confidence 9998873
No 64
>TIGR00183 prok_nadp_idh isocitrate dehydrogenase, NADP-dependent, prokaryotic type. Prokaryotic NADP-dependent isocitrate dehydrogenases resemble their NAD-dependent counterparts and 3-isopropylmalate dehydrogenase (an NAD-dependent enzyme) more closely than they resemble eukaryotic NADP-dependent isocitrate dehydrogenases.
Probab=91.47 E-value=0.025 Score=57.71 Aligned_cols=65 Identities=29% Similarity=0.404 Sum_probs=46.5
Q ss_pred chhhhcccccCCCCCCCCccccCCCCcCH-------HHHHHHHHHHHhhcCCCce---eEEEEeeeeeecCCCCccccc
Q psy8787 28 SELISAQYINTPSISQWSWRGLKVQGLGE-------FNLYANVRPCRSLEGYPTL---YDDVDVVTIRENTEGEYSGIE 96 (364)
Q Consensus 28 ~~~~~~~~~~~p~~~~~~i~~i~GDGIGp-------~EV~a~~r~Vl~a~g~~i~---~~~vdig~~re~~~G~Y~~lp 96 (364)
..+-.+|+++.++.++| ++++..++ |++|+|+||+...++++.. +..+|+.++||+++|.|++.+
T Consensus 90 ~~~~~~da~l~Ga~~tp----~~~~~~s~~l~LR~~ldLyaNvRP~k~~pgl~s~~~~~~~vDivIvREnteG~Y~g~~ 164 (416)
T TIGR00183 90 DAIKEYRVAIKGPLTTP----VGGGIRSLNVALRQELDLYVCLRPVRYYKGVPSPVKHPEKVDMVIFRENTEDIYAGIE 164 (416)
T ss_pred HHHHHCCEEEECcccCC----CCccccCcHHHHHHHcCCEEEEeEeecCCCCCCcCCCCCCCCEEEEEeCCCCcccccc
Confidence 33345577777766665 22322232 7899999999877776543 478999999999999998875
No 65
>PRK07006 isocitrate dehydrogenase; Reviewed
Probab=91.33 E-value=0.024 Score=57.68 Aligned_cols=63 Identities=29% Similarity=0.422 Sum_probs=45.6
Q ss_pred hhhcccccCCCCCCCCccccCCCCcCH-------HHHHHHHHHHHhhcCCCce---eEEEEeeeeeecCCCCccccc
Q psy8787 30 LISAQYINTPSISQWSWRGLKVQGLGE-------FNLYANVRPCRSLEGYPTL---YDDVDVVTIRENTEGEYSGIE 96 (364)
Q Consensus 30 ~~~~~~~~~p~~~~~~i~~i~GDGIGp-------~EV~a~~r~Vl~a~g~~i~---~~~vdig~~re~~~G~Y~~lp 96 (364)
+-.+++++.++++.| ++++..++ |++|+|+|||...++++.. +.++|+.++||+++|.|++++
T Consensus 85 ~~~~da~l~G~i~tp----~~~~~~s~~l~LR~~ldLyaNvRPvk~~pgl~~plk~~~~iD~vIvREnteG~Y~g~~ 157 (409)
T PRK07006 85 IREYRVAIKGPLTTP----VGGGIRSLNVALRQELDLYVCLRPVRYFKGVPSPVKRPEDTDMVIFRENSEDIYAGIE 157 (409)
T ss_pred HHHCCEEEECcccCC----CCcCccChHHHHHHHcCCEEEEEEEecCCCCCCCCCCCCCCCEEEEEeccCCeecccc
Confidence 345567777766665 22222232 7899999999888877544 478999999999999998874
No 66
>PF00180 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; InterPro: IPR024084 Isocitrate dehydrogenase (IDH) [, ] is an important enzyme of carbohydrate metabolism which catalyses the oxidative decarboxylation of isocitrate into alpha-ketoglutarate. IDH is either dependent on NAD+ (1.1.1.41 from EC) or on NADP+ (1.1.1.42 from EC). In eukaryotes there are at least three isozymes of IDH: two are located in the mitochondrial matrix (one NAD+-dependent, the other NADP+-dependent), while the third one (also NADP+-dependent) is cytoplasmic. In Escherichia coli the activity of a NADP+-dependent form of the enzyme is controlled by the phosphorylation of a serine residue; the phosphorylated form of IDH is completely inactivated. 3-isopropylmalate dehydrogenase (1.1.1.85 from EC) (IMDH) [, ] catalyses the third step in the biosynthesis of leucine in bacteria and fungi, the oxidative decarboxylation of 3-isopropylmalate into 2-oxo-4-methylvalerate. Tartrate dehydrogenase (1.1.1.93 from EC) [] catalyses the reduction of tartrate to oxaloglycolate. These enzymes are evolutionary related. To this family also belongs the enzyme tartrate dehydrogenase, which shows strong homology to prokaryotic isopropylmalate dehydrogenases and, to a lesser extent, isocitrate dehydrogenase []. This entry represents a structural domain found in all types of isocitrate dehydrogenase, and in isopropylmalate dehydrogenase and tartrate dehydrogenase. The crystal structure of Escherichia coli isopropylmalate dehydrogenase has been described []. ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1WAL_A 1CNZ_B 2D4V_C 1CM7_A 4AOY_D 3FMX_X 3FLK_C 1A05_A 1X0L_B 4F7I_D ....
Probab=78.92 E-value=0.06 Score=53.79 Aligned_cols=76 Identities=45% Similarity=0.663 Sum_probs=46.3
Q ss_pred cceeEeeccchhhhcccccCCCCCCCCccccCCCCcCH----------HHHHHHHHHHHhh--cCCCcee-----EEEEe
Q psy8787 19 VETISYLTLSELISAQYINTPSISQWSWRGLKVQGLGE----------FNLYANVRPCRSL--EGYPTLY-----DDVDV 81 (364)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~i~GDGIGp----------~EV~a~~r~Vl~a--~g~~i~~-----~~vdi 81 (364)
++.+.=.+...+-.+|+++.++.+.|. +++..+ |++|+|+||+... ++.+..+ .++|+
T Consensus 49 g~~lp~et~~~i~~~daiL~Gai~~p~-----~~~~~~~~~l~~lR~~ldl~anvRp~~~~~~~~~~~~~~~~~~~~iDi 123 (348)
T PF00180_consen 49 GEPLPDETLEAIKRADAILKGAIGTPK-----PPGIRSENGLLKLRKELDLYANVRPVRSFPGPGVPSPLKDEIPEGIDI 123 (348)
T ss_dssp SSSSHHHHHHHHHHCSEEEEEE--CGG-----SSSHSHHHHHHHHHHHTTHHEEEEEEEEECETTGGSSBSHHHHTTSEE
T ss_pred cccccHHHHHHHhhcCcEEEccccccc-----ccccccHHHHHHHHHhcccceeeEEEEEeccccccccccccccCcceE
Confidence 444444455555667888888888877 444444 4556666665544 2222222 35999
Q ss_pred eeeeecCCCCccccchhH
Q psy8787 82 VTIRENTEGEYSGIEHEI 99 (364)
Q Consensus 82 g~~re~~~G~Y~~lp~et 99 (364)
.++||+++|.|.+.+...
T Consensus 124 vivREnteG~Y~g~~~~~ 141 (348)
T PF00180_consen 124 VIVRENTEGLYSGIEHEI 141 (348)
T ss_dssp EEEEESSSGGGGEEEEEE
T ss_pred EEecccccCcccCCCCce
Confidence 999999999998765433
No 67
>PRK12862 malic enzyme; Reviewed
Probab=72.95 E-value=17 Score=40.28 Aligned_cols=99 Identities=21% Similarity=0.235 Sum_probs=67.7
Q ss_pred EecHHHHHHHHHHHHHHHHhCC-CCceEEEEeCccc---ccccHHHHHHHHHHhhcCCCeeEe-eEeHHHHHHHHhcC--
Q psy8787 174 LITEEASSRVAEFAFEYAKTNN-RSKVTAVHKANIM---RMSDGLFLRCCRDAAEKFPEVKFE-EKYLDTVCLNMVQD-- 246 (364)
Q Consensus 174 ~~t~~~~eriar~Af~~A~~~~-~~~Vt~v~KaNv~---~~~~~lf~~~~~~va~~yp~i~~~-~~~vD~~~~~lv~~-- 246 (364)
-.|.+...++++.+.+++++-| ..||-+..-+|.- ..+...-++.++.+.+++|++.++ .+-.|++...=+..
T Consensus 608 ~pt~e~La~ia~~aa~~ar~~GIePRVAvLshs~~Gs~~~ee~~~i~pAiellr~~~~g~~VdGPl~aDtAf~~~~~~~K 687 (763)
T PRK12862 608 DPTAEELAEITILAAEEVRRFGIEPKVALLSHSNFGSSDSPSARKMREALEILRERAPDLEVDGEMHGDAALDEELRDRI 687 (763)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcccccCCCCCchHHHHHHHHHHHHhcCCCcEEEcCCCHHHHcCHHHHhhc
Confidence 3477888889999999998655 3568777333333 223345556666666788987776 44578876443222
Q ss_pred -C-----CCccEEEeCCCc-chhhhhhhhhccC
Q psy8787 247 -P-----TQYDVLVMPNLY-GDILSDMCAGLVG 272 (364)
Q Consensus 247 -P-----~~fdVivt~Nl~-GDIlSD~aa~l~G 272 (364)
| +.+||+|++|+. |+|.--+..-+.|
T Consensus 688 ~~~s~vaG~aDvLV~P~~DqGNI~~Kll~f~~g 720 (763)
T PRK12862 688 FPDSRLEGEANLLVFPNLDAANIAYNLLKTAAG 720 (763)
T ss_pred CCCCccCCCCCEEEecChhHhhHHHHHHHHhcc
Confidence 2 459999999998 9998888776654
No 68
>KOG1671|consensus
Probab=72.60 E-value=2.1 Score=39.35 Aligned_cols=34 Identities=32% Similarity=0.543 Sum_probs=29.0
Q ss_pred CCcccccccCCCceeEeeccCCCCCccCCCCCCh
Q psy8787 274 LGLTPSGNIGLNGALFESVHGTAPDIAGKDLANP 307 (364)
Q Consensus 274 lGl~psa~ig~~~~~fEp~HGsapdiaGk~~aNP 307 (364)
||..|-+|-|+.++.|.|+|||--|+-|+=.--|
T Consensus 156 LGCVp~~~AGd~gg~~CPCHGSHYdasGRIrkGP 189 (210)
T KOG1671|consen 156 LGCVPIANAGDYGGYYCPCHGSHYDASGRIRKGP 189 (210)
T ss_pred ccccccccccccCceecccccccccccCceecCC
Confidence 6889999999999999999999999988644333
No 69
>TIGR00651 pta phosphate acetyltransferase. Model contains a gene from E.coli coding for ethanolamine utilization protein (euti) and also contains similarity to malate oxidoreductases
Probab=64.44 E-value=44 Score=32.80 Aligned_cols=98 Identities=20% Similarity=0.210 Sum_probs=61.2
Q ss_pred cHHHHHHHHHHHHHHHHhCC--CCceEEEEe---CcccccccHHHHHHHHHHhhcCCCeeEee-EeHHHHHHH------H
Q psy8787 176 TEEASSRVAEFAFEYAKTNN--RSKVTAVHK---ANIMRMSDGLFLRCCRDAAEKFPEVKFEE-KYLDTVCLN------M 243 (364)
Q Consensus 176 t~~~~eriar~Af~~A~~~~--~~~Vt~v~K---aNv~~~~~~lf~~~~~~va~~yp~i~~~~-~~vD~~~~~------l 243 (364)
|.+.-..|+..|.++|+.-+ ..||.+..= .|--..+-..-++.++-+.+++|++.++= +-+|++.-. .
T Consensus 157 ~~e~l~~ia~~a~~~a~~lg~~~PkVAlLs~S~~gs~~~~~~~kv~eA~~l~~~~~~~~~vdG~l~~D~Al~~~~a~~K~ 236 (303)
T TIGR00651 157 NAEQLAEIAIQSAKSAKSFGEIEPKVALLSYSTKGSGSGEDVEKVREATRIAKEKRPDLTIDGELQFDAAFVEKVAEKKA 236 (303)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCCCccHHHHHHHHHHhccCCCeEEEecCchhhhCCHHHHHhhC
Confidence 44556667888889998655 557776643 22211122344555544444788877764 446776432 1
Q ss_pred hcCC--CCccEEEeCCCc-chhhhhhhhhccCC
Q psy8787 244 VQDP--TQYDVLVMPNLY-GDILSDMCAGLVGG 273 (364)
Q Consensus 244 v~~P--~~fdVivt~Nl~-GDIlSD~aa~l~G~ 273 (364)
..+| +.-||+|+||++ |||+--+.-.+.|+
T Consensus 237 ~~s~v~G~AdvLV~Pnl~aGNi~~K~~~~~~~~ 269 (303)
T TIGR00651 237 PNSPVAGSANVFVFPDLDAGNIGYKIVQRLGDA 269 (303)
T ss_pred CCCccCCcCCEEEeCCchHHHHHHHHHHHhcCC
Confidence 2222 577999999999 99988887766554
No 70
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=63.65 E-value=25 Score=31.71 Aligned_cols=68 Identities=12% Similarity=0.152 Sum_probs=39.1
Q ss_pred HHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhhcCCCeeEeeEeHHHHHHHHhcCCCCccEEEeCCCc
Q psy8787 187 AFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLDTVCLNMVQDPTQYDVLVMPNLY 259 (364)
Q Consensus 187 Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp~i~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~ 259 (364)
++| |..||.++|++|+|..-. -...++-.+.+..+- .+++-..-+-....++.+..+.||+|.+.==|
T Consensus 57 GlE-ALSRGA~~v~fVE~~~~a---~~~i~~N~~~l~~~~-~~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY 124 (183)
T PF03602_consen 57 GLE-ALSRGAKSVVFVEKNRKA---IKIIKKNLEKLGLED-KIRVIKGDAFKFLLKLAKKGEKFDIIFLDPPY 124 (183)
T ss_dssp HHH-HHHTT-SEEEEEES-HHH---HHHHHHHHHHHT-GG-GEEEEESSHHHHHHHHHHCTS-EEEEEE--ST
T ss_pred HHH-HHhcCCCeEEEEECCHHH---HHHHHHHHHHhCCCc-ceeeeccCHHHHHHhhcccCCCceEEEECCCc
Confidence 566 678899999999987543 245555555443221 24444444445566777788999988765444
No 71
>PTZ00435 isocitrate dehydrogenase; Provisional
Probab=58.71 E-value=19 Score=36.92 Aligned_cols=25 Identities=12% Similarity=0.139 Sum_probs=21.0
Q ss_pred CccEEEEccCCCccccCceeeeeCC
Q psy8787 143 DVDVVTIRENTEGEYSGIEHEIVDG 167 (364)
Q Consensus 143 ~iD~vIvREnteg~Y~g~~~~~~~~ 167 (364)
..+++++|||+||.|.+++..+..+
T Consensus 127 ~~~i~i~Ren~e~~y~~id~vi~re 151 (413)
T PTZ00435 127 KKPIVIGRHAFGDQYKATDFVVDGP 151 (413)
T ss_pred CCCeeeeccccCCCcCceEEEEecC
Confidence 4789999999999999998765443
No 72
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=57.91 E-value=55 Score=36.25 Aligned_cols=99 Identities=21% Similarity=0.197 Sum_probs=64.9
Q ss_pred cHHHHHHHHHHHHHHHHhCC-CCceEEE---EeCcccccccHHHHHHHHHHhhcCCCeeEee-EeHHHHHHHH------h
Q psy8787 176 TEEASSRVAEFAFEYAKTNN-RSKVTAV---HKANIMRMSDGLFLRCCRDAAEKFPEVKFEE-KYLDTVCLNM------V 244 (364)
Q Consensus 176 t~~~~eriar~Af~~A~~~~-~~~Vt~v---~KaNv~~~~~~lf~~~~~~va~~yp~i~~~~-~~vD~~~~~l------v 244 (364)
|-+.-..|+..|-++|+.-| ..||-+. ++.|.-..+...-++..+-+.+++|++.++= +.+|++.-.- .
T Consensus 602 taeqLa~IA~~aa~~ar~lGiePRVALLS~Sn~Gse~~k~~~~vreA~~llk~~~~~l~~dGemq~D~Al~~~va~~K~p 681 (752)
T PRK07232 602 TAEELAEIALMAAEEVRRFGIEPRVALLSHSNFGSSDSPSARKMREAVELLRERAPDLEVDGEMHGDAALNEEIRKDLYP 681 (752)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCeEEEEeccccCCCCCCcHHHHHHHHHHHHhhCCCcEEEEechHHHhCCHHHHHhhCC
Confidence 44556667778888888655 3578888 5544332233455555555556778877764 4477664321 2
Q ss_pred cCC--CCccEEEeCCCc-chhhhhhhhhccCCC
Q psy8787 245 QDP--TQYDVLVMPNLY-GDILSDMCAGLVGGL 274 (364)
Q Consensus 245 ~~P--~~fdVivt~Nl~-GDIlSD~aa~l~G~l 274 (364)
.+| +.-||+|.||+- |||+--+.-.+.|+.
T Consensus 682 ~s~vaG~ANVLIfPdLeaGNI~yKllq~l~g~~ 714 (752)
T PRK07232 682 FSRLKGPANVLVMPNLEAANISYNLLKELGGGV 714 (752)
T ss_pred CCccCCcCCEEEeCCchhhHHHHHHHHHhcCCe
Confidence 222 567899999997 999999988776653
No 73
>PRK05805 phosphate butyryltransferase; Validated
Probab=56.30 E-value=83 Score=30.76 Aligned_cols=124 Identities=14% Similarity=0.126 Sum_probs=69.9
Q ss_pred cHHHHHHHHHHHHHHHHhCCC--CceEEEEeCcccccccHHHHHHHHHHh---h--cCCCeeEe-eEeHHHHHHH-----
Q psy8787 176 TEEASSRVAEFAFEYAKTNNR--SKVTAVHKANIMRMSDGLFLRCCRDAA---E--KFPEVKFE-EKYLDTVCLN----- 242 (364)
Q Consensus 176 t~~~~eriar~Af~~A~~~~~--~~Vt~v~KaNv~~~~~~lf~~~~~~va---~--~yp~i~~~-~~~vD~~~~~----- 242 (364)
|-+.-..|+..|-+.|++-|. .||.+..=++-......-.++ +.+++ + ++|+..++ ++.+|++.-.
T Consensus 149 ~~~q~~~I~~~a~~~~~~lG~e~PkVA~LS~s~~~~~~~~~t~~-a~~l~~~~~~~~~~~~~vdG~l~~D~A~~~~~a~~ 227 (301)
T PRK05805 149 DLKEKIDIINNAVTVAHAIGIENPKVAPICAVEVVNPKMPATLD-AALLSKMSDRGQIKGCIVDGPLALDNALSEEAAKH 227 (301)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCCeEEEEecccCCCCCChHHHH-HHHHHHHHhhCcCCCeEEEechHHHHhcCHHHHHH
Confidence 455566678888999987764 466655422221111122222 12222 2 46988775 4457877522
Q ss_pred -HhcCC--CCccEEEeCCCc-chhhhhhhhhccCCCCcccccccCCCceeEeeccCCCCCccCCCCCC
Q psy8787 243 -MVQDP--TQYDVLVMPNLY-GDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGTAPDIAGKDLAN 306 (364)
Q Consensus 243 -lv~~P--~~fdVivt~Nl~-GDIlSD~aa~l~G~lGl~psa~ig~~~~~fEp~HGsapdiaGk~~aN 306 (364)
-..+| ++.||+|.||+- |||+--+...+.| .- ..+.-+|... |+|=+.+.---+++.|
T Consensus 228 k~~~s~v~G~Anvli~Pnl~agNi~yK~l~~~~~-~~-~~gil~G~~~----Pv~~~SR~~s~~~i~~ 289 (301)
T PRK05805 228 KGIDGPVAGNADILLVPNIEAGNVMYKTLTYFAD-CK-NGGLLVGTSA----PVVLTSRADSHETKLN 289 (301)
T ss_pred hCCCCCCCCcCCEEEeCChHHHHHHHHHHHHhcC-Ce-EEeeeecCCC----CEEECCCCCCHHHHHH
Confidence 22222 678999999996 9998887776654 33 3336666554 4443333222344555
No 74
>PLN00103 isocitrate dehydrogenase (NADP+); Provisional
Probab=56.03 E-value=2.9 Score=42.71 Aligned_cols=74 Identities=8% Similarity=0.031 Sum_probs=46.1
Q ss_pred cceeEeeccchhhhcccccCCCCCCCCccc--cCC---CCcCH-------HHHHHHHHH--HHhhc----CCCcee----
Q psy8787 19 VETISYLTLSELISAQYINTPSISQWSWRG--LKV---QGLGE-------FNLYANVRP--CRSLE----GYPTLY---- 76 (364)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~--i~G---DGIGp-------~EV~a~~r~--Vl~a~----g~~i~~---- 76 (364)
++.+.-.+...+..+++++.++.++|.-.- -+| ...++ |++|+|+|| +...+ |++-.+
T Consensus 55 g~~lp~e~le~~k~~da~lkGav~tp~~~~~~~~~~~~~~~s~n~~lRk~ldlyanvRP~~vk~~~~~~~g~~~~i~~~~ 134 (410)
T PLN00103 55 DDKVTVESAEATLKYNVAIKCATITPDEARVKEFGLKQMWKSPNGTIRNILNGTVFREPIICKNIPRLVPGWTKPICIGR 134 (410)
T ss_pred CCcCCHHHHHHHHHCCEEEECCccCcccccccccCccccccCchHHHHHHcCCeEEecchhccccCccCCCCCCceeecc
Confidence 444444455555666777777777662110 011 13333 789999999 76655 543221
Q ss_pred -----------------EEEEeeeeeecCCCCc
Q psy8787 77 -----------------DDVDVVTIRENTEGEY 92 (364)
Q Consensus 77 -----------------~~vdig~~re~~~G~Y 92 (364)
..+|+.++|||++|.|
T Consensus 135 ~~~~~~~~~~d~v~~~~~~id~vivRENTEg~y 167 (410)
T PLN00103 135 HAFGDQYRATDAVIKGPGKLKLVFVPEGKDEKT 167 (410)
T ss_pred cccccccccceeccCCCCceEEEEEecCCCcee
Confidence 5688899999999987
No 75
>PRK07742 phosphate butyryltransferase; Validated
Probab=54.71 E-value=1e+02 Score=29.97 Aligned_cols=129 Identities=13% Similarity=0.134 Sum_probs=73.3
Q ss_pred cHHHHHHHHHHHHHHHHhCCC--CceEEEEeCcccccccHHHHHHHH--HHhh--cCCCeeEee-EeHHHHHHH------
Q psy8787 176 TEEASSRVAEFAFEYAKTNNR--SKVTAVHKANIMRMSDGLFLRCCR--DAAE--KFPEVKFEE-KYLDTVCLN------ 242 (364)
Q Consensus 176 t~~~~eriar~Af~~A~~~~~--~~Vt~v~KaNv~~~~~~lf~~~~~--~va~--~yp~i~~~~-~~vD~~~~~------ 242 (364)
|-+.-..|+..|.++|+.-|. .||-+..=.+--......-++..+ +..+ ++|+..++- +.+|++.-.
T Consensus 148 ~~e~l~~ia~~a~~~a~~lGie~PkVAlLs~gee~~k~~~~~~eA~~l~~~~~~~~~~~~~vdG~l~~D~A~~~~~a~~k 227 (299)
T PRK07742 148 DLEQKAAIIQNAVEVARAIGIDLPKVAPLAAVEVVNPAMQATIDAAALTQMNRRGQIKNCVVDGPLALDNAVSQIAAEHK 227 (299)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCeEEEEecccCCCCCCHHHHHHHHHHHHHhhCCCCCeEEeechHHHHhcCHHHHHHh
Confidence 445566678888899986553 567766433222112233343321 2222 468887754 446766433
Q ss_pred HhcCC--CCccEEEeCCCc-chhhhhhhhhccCCCCcccccccCCCceeEeeccCCCCCccCCCCCChhHH
Q psy8787 243 MVQDP--TQYDVLVMPNLY-GDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGTAPDIAGKDLANPTAL 310 (364)
Q Consensus 243 lv~~P--~~fdVivt~Nl~-GDIlSD~aa~l~G~lGl~psa~ig~~~~~fEp~HGsapdiaGk~~aNP~a~ 310 (364)
-..+| +.-||+|.||+. |||+--+...+.|+ . ..+.-+|... |+|=+...---+++.|-+++
T Consensus 228 ~~~s~v~G~Anvli~Pnl~agNi~~K~l~~~~~~-~-~g~il~G~~~----Pv~~~SR~~s~~~~~~~~al 292 (299)
T PRK07742 228 GIVSDVAGKADILLVPTIEAGNVLYKSLVYFADA-K-VGAMIAGAKA----PIVLTSRADSAETKLYSLAL 292 (299)
T ss_pred CCCCCCCCcCCEEEeCChHHHHHHHHHHHHhcCC-c-EeceeeccCC----CEEeCCCCCCHHHHHHHHHH
Confidence 11222 567999999997 99988887777655 4 3444445443 55543333333566666654
No 76
>KOG0786|consensus
Probab=53.78 E-value=6.8 Score=37.54 Aligned_cols=64 Identities=25% Similarity=0.432 Sum_probs=43.6
Q ss_pred hhcccccCCCCCCCCccccCCCCcCH----------HHHHHHHHHHHhhcC------CCcee-EEEEeeeeeecCCCCcc
Q psy8787 31 ISAQYINTPSISQWSWRGLKVQGLGE----------FNLYANVRPCRSLEG------YPTLY-DDVDVVTIRENTEGEYS 93 (364)
Q Consensus 31 ~~~~~~~~p~~~~~~i~~i~GDGIGp----------~EV~a~~r~Vl~a~g------~~i~~-~~vdig~~re~~~G~Y~ 93 (364)
..+|+.+.+++++|+|.- .-.-| +.+|+|.||+--.+. .+-++ +.+|+.++||.+.|.|+
T Consensus 66 k~sdavllgaigg~kw~~---~~lrpe~gll~ir~~lkvfanlrp~~~~~qlvd~s~lk~e~aeg~d~mvvrel~ggiyf 142 (363)
T KOG0786|consen 66 KKSDAVLLGAIGGYKWDK---NHLRPEMGLLKIRRDLKVFANLRPATVLPQLVDASTLKKEVAEGVDMMVVRELTGGIYF 142 (363)
T ss_pred hhcceeEeecccCcccCc---CCcChhhhHHHHHHHHHHHhcCCcchhhHhhhccccccHHHhcCcceEEeeeecCceee
Confidence 345788889999999863 22333 567888877733321 12222 45899999999999998
Q ss_pred ccch
Q psy8787 94 GIEH 97 (364)
Q Consensus 94 ~lp~ 97 (364)
+-|.
T Consensus 143 ge~r 146 (363)
T KOG0786|consen 143 GEPR 146 (363)
T ss_pred cCcc
Confidence 8765
No 77
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=53.14 E-value=39 Score=26.69 Aligned_cols=61 Identities=15% Similarity=0.164 Sum_probs=37.3
Q ss_pred HHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHh-hc--CCCeeEeeEeHHHHHHHHhcCCCCccEEEeCC
Q psy8787 186 FAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAA-EK--FPEVKFEEKYLDTVCLNMVQDPTQYDVLVMPN 257 (364)
Q Consensus 186 ~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va-~~--yp~i~~~~~~vD~~~~~lv~~P~~fdVivt~N 257 (364)
.++.+|+++...+|+.++.. .-+.+.+++-+ +. -+.|.+.+.-+ ......+++||+|++.+
T Consensus 15 ~~~~l~~~~~~~~v~gvD~s-------~~~~~~a~~~~~~~~~~~~i~~~~~d~----~~~~~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 15 LSIALARLFPGARVVGVDIS-------PEMLEIARERAAEEGLSDRITFVQGDA----EFDPDFLEPFDLVICSG 78 (112)
T ss_dssp HHHHHHHHHTTSEEEEEESS-------HHHHHHHHHHHHHTTTTTTEEEEESCC----HGGTTTSSCEEEEEECS
T ss_pred HHHHHHhcCCCCEEEEEeCC-------HHHHHHHHHHHHhcCCCCCeEEEECcc----ccCcccCCCCCEEEECC
Confidence 45666664334689999853 23334444433 22 24566555433 45567788899999999
No 78
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=49.25 E-value=1.1e+02 Score=28.01 Aligned_cols=77 Identities=12% Similarity=0.151 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhhcCCCeeEeeEe-----HH---HHHHHHhcCCCC
Q psy8787 178 EASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKY-----LD---TVCLNMVQDPTQ 249 (364)
Q Consensus 178 ~~~eriar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp~i~~~~~~-----vD---~~~~~lv~~P~~ 249 (364)
......+++..+.. +|.++|.++.=.+-. .+.....+-+++..+++|++++.... .+ ..+.++++....
T Consensus 106 ~~g~~~~~~l~~~~--~g~~~i~~l~~~~~~-~~~~~R~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (270)
T cd06308 106 EIGRQAGEYIANLL--PGKGNILEIWGLEGS-SPAIERHDGFKEALSKYPKIKIVAQQDGDWLKEKAEEKMEELLQANPD 182 (270)
T ss_pred HHHHHHHHHHHHHc--CCCceEEEEECCCCC-chHHHHHHHHHHHHHHCCCCEEEEecCCCccHHHHHHHHHHHHHhCCC
Confidence 34444555544432 355678777411111 12234445666666678776543221 12 345666655457
Q ss_pred ccEEEeCC
Q psy8787 250 YDVLVMPN 257 (364)
Q Consensus 250 fdVivt~N 257 (364)
+|.|++.|
T Consensus 183 ~~aI~~~~ 190 (270)
T cd06308 183 IDLVYAHN 190 (270)
T ss_pred CcEEEeCC
Confidence 89888865
No 79
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type. This model does not discriminate cytosolic, mitochondrial, and chloroplast proteins. However, the model starts very near the amino end of the cytosolic form; the finding of additional amino-terminal sequence may indicate a transit peptide.
Probab=48.81 E-value=2.5 Score=43.09 Aligned_cols=80 Identities=11% Similarity=-0.012 Sum_probs=50.6
Q ss_pred ccceeEeeccchhhhcccccCCCCCCCCccccCCC-----CcCH-------HHHHHHHHHH------HhhcCCCc-----
Q psy8787 18 TVETISYLTLSELISAQYINTPSISQWSWRGLKVQ-----GLGE-------FNLYANVRPC------RSLEGYPT----- 74 (364)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~i~GD-----GIGp-------~EV~a~~r~V------l~a~g~~i----- 74 (364)
|++.+.-.+...+..+++...++..+|.-..+.+. .-.| |++|+++||| ...++.+.
T Consensus 51 tg~~lp~ea~eaik~~dv~LkGa~~TP~~~~~~~~~l~k~~~S~n~~lR~~ldlyanvRPi~~~~~~~~~pg~~~~i~i~ 130 (409)
T TIGR00127 51 TNDQVTVDAAEAIKKYNVGVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWEKPIIIG 130 (409)
T ss_pred hCCcCCHHHHHHHHHcCEEEECcccCCccccccccccccccCCccHHHHHHcCCeEEeeeccccccCccCCCCCCCeeee
Confidence 45555555666666677777776666553211121 1222 7889999994 33344432
Q ss_pred ------eeEEEEeeeeeecC-CCCccccch
Q psy8787 75 ------LYDDVDVVTIRENT-EGEYSGIEH 97 (364)
Q Consensus 75 ------~~~~vdig~~re~~-~G~Y~~lp~ 97 (364)
.+..+|+.++||++ +|.|.+...
T Consensus 131 R~~~~~~y~~iD~vivREnt~Eg~Y~g~e~ 160 (409)
T TIGR00127 131 RHAFGDQYRATDFVVPGPGKLELVYKPKDG 160 (409)
T ss_pred ccccCCCcCceEEEEecCCeeeEEEECCCC
Confidence 26789999999999 999987753
No 80
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=48.66 E-value=1.3e+02 Score=23.45 Aligned_cols=79 Identities=19% Similarity=0.154 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCCceEEEEeCccccc--------ccHHHHHHHHHHhhc--CCCeeEeeEeHHH----HHHH
Q psy8787 177 EEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRM--------SDGLFLRCCRDAAEK--FPEVKFEEKYLDT----VCLN 242 (364)
Q Consensus 177 ~~~~eriar~Af~~A~~~~~~~Vt~v~KaNv~~~--------~~~lf~~~~~~va~~--yp~i~~~~~~vD~----~~~~ 242 (364)
...+.+++++|.++|..++ .+++++|=..-... ...-.++..+.+.+. .+++.+...+++. ...+
T Consensus 9 ~~~~~~~l~~a~~~a~~~~-~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 87 (130)
T cd00293 9 SEESERALRWAARLARRLG-AELVLLHVVDPPPSSAAELAELLEEEARALLEALREALAEAGVKVETVVLEGDPAEAILE 87 (130)
T ss_pred CHHHHHHHHHHHHHHHhcC-CEEEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEecCCCHHHHHH
Confidence 4568889999999999875 68887763211110 112333444444332 4666665554322 3333
Q ss_pred HhcCCCCccEEEeCC
Q psy8787 243 MVQDPTQYDVLVMPN 257 (364)
Q Consensus 243 lv~~P~~fdVivt~N 257 (364)
.++ -.++|++|...
T Consensus 88 ~~~-~~~~dlvvig~ 101 (130)
T cd00293 88 AAE-ELGADLIVMGS 101 (130)
T ss_pred HHH-HcCCCEEEEcC
Confidence 333 46688777754
No 81
>PRK08299 isocitrate dehydrogenase; Validated
Probab=46.19 E-value=4.5 Score=41.23 Aligned_cols=73 Identities=8% Similarity=0.001 Sum_probs=43.0
Q ss_pred cceeEeeccchhhhcccccCCCCCCCCccccCC-----CCcCH-------HHHHHHHHHH--Hh----hcCCCceeEEEE
Q psy8787 19 VETISYLTLSELISAQYINTPSISQWSWRGLKV-----QGLGE-------FNLYANVRPC--RS----LEGYPTLYDDVD 80 (364)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~i~G-----DGIGp-------~EV~a~~r~V--l~----a~g~~i~~~~vd 80 (364)
++.+.-.+...+-.+|+.+.++.++|+-..+.+ ...++ |++|+|+||+ .. .+|++. +
T Consensus 53 G~~lp~~tl~~ik~~da~LkGav~tp~~~~~~~~~~~~~~~s~n~~LRk~ldLyaNiRPv~~k~i~~~~pg~~~-----~ 127 (402)
T PRK08299 53 DDQVTIDAANAIKKYGVGVKCATITPDEARVKEFNLKKMWKSPNGTIRNILGGTVFREPIICKNVPRLVPGWTK-----P 127 (402)
T ss_pred CCcCCHHHHHHHHHCCEEEECCccCCCcccccccCccccccCchHHHHHHcCCeEEEEeeecccccccCCCCCC-----C
Confidence 333333344444566777777777765211111 12232 7788888887 33 344432 4
Q ss_pred eeeeeecCCCCccccc
Q psy8787 81 VVTIRENTEGEYSGIE 96 (364)
Q Consensus 81 ig~~re~~~G~Y~~lp 96 (364)
+.++||+++|.|.++.
T Consensus 128 ivivREnTEg~Y~gi~ 143 (402)
T PRK08299 128 IVIGRHAYGDQYRATD 143 (402)
T ss_pred EEEEecccCCccccee
Confidence 8899999999998773
No 82
>PRK09653 eutD phosphotransacetylase; Reviewed
Probab=45.41 E-value=90 Score=30.79 Aligned_cols=125 Identities=23% Similarity=0.224 Sum_probs=72.8
Q ss_pred cHHHHHHHHHHHHHHHHhCC-CCceEEEEe---Ccc-cccccHHHHHHHHHHhhcCCCeeEee-EeHHHHHHH------H
Q psy8787 176 TEEASSRVAEFAFEYAKTNN-RSKVTAVHK---ANI-MRMSDGLFLRCCRDAAEKFPEVKFEE-KYLDTVCLN------M 243 (364)
Q Consensus 176 t~~~~eriar~Af~~A~~~~-~~~Vt~v~K---aNv-~~~~~~lf~~~~~~va~~yp~i~~~~-~~vD~~~~~------l 243 (364)
|.+.-..|+..|.++|+.-| ..||-+..= .+- ++ +...-++.++-+.+++|+..++- +.+|++.-. .
T Consensus 173 ~~e~l~~ia~~a~~~ar~lG~~PkVAlLs~s~~Gs~~~~-~~~~~~ea~~ll~~~~~~~~vdGel~~D~A~~~~~~~~k~ 251 (324)
T PRK09653 173 TAEQLAEIAINSAETAKAFGIDPKVAMLSFSTKGSAKGP-EVDKVQEATEIAKELAPDLKIDGELQFDAAFVPEVAAKKA 251 (324)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCeEEEEeccccCCCCCC-cHHHHHHHHHHHHhhCCCCeEEecchHHHhCCHHHHHhhC
Confidence 44556677888888888654 345666532 221 22 22455666655555789877764 457876422 1
Q ss_pred hcCC--CCccEEEeCCCc-chhhhhhhhhccCCCCcccccccCCCceeEeeccCCCCCccCCCCCC
Q psy8787 244 VQDP--TQYDVLVMPNLY-GDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGTAPDIAGKDLAN 306 (364)
Q Consensus 244 v~~P--~~fdVivt~Nl~-GDIlSD~aa~l~G~lGl~psa~ig~~~~~fEp~HGsapdiaGk~~aN 306 (364)
..+| ++-||+|.||+. |||+--+.-.+.|+....| .-.|.. -|+|=+-+.---+++.|
T Consensus 252 ~~s~v~G~AnvLi~P~l~agNi~yK~l~~~~~~~~~Gp-il~G~~----~Pv~~~Sr~~s~~~i~~ 312 (324)
T PRK09653 252 PGSPVAGKANVFVFPSLEAGNIGYKIAQRLGGFEAVGP-ILQGLN----KPVNDLSRGCSVEDIYN 312 (324)
T ss_pred CCCccCCcCCEEEcCChHHhHHHHHHHHHhcCCeEech-HHhCCC----CCEEeCCCCCCHHHHHH
Confidence 2222 567999999998 9999888877765532222 223333 35554333222345666
No 83
>PRK12861 malic enzyme; Reviewed
Probab=42.19 E-value=1.8e+02 Score=32.49 Aligned_cols=98 Identities=19% Similarity=0.159 Sum_probs=61.3
Q ss_pred cHHHHHHHHHHHHHHHHhCCC-CceEEEEeCcc---cccccHHHHHHHHHHhhcCCCeeEe-eEeHHHHHHHHh------
Q psy8787 176 TEEASSRVAEFAFEYAKTNNR-SKVTAVHKANI---MRMSDGLFLRCCRDAAEKFPEVKFE-EKYLDTVCLNMV------ 244 (364)
Q Consensus 176 t~~~~eriar~Af~~A~~~~~-~~Vt~v~KaNv---~~~~~~lf~~~~~~va~~yp~i~~~-~~~vD~~~~~lv------ 244 (364)
|-+.-..|+..|.++|+.-|- .||.+..=+|. -..+....++..+-+.+++|++.++ ++..|++.-.-+
T Consensus 611 ~aeqla~Ia~~aa~~ak~lGiePkVAlLS~St~GS~~~~~~~km~eA~~l~~~~~pd~~vdGemq~DaAl~~e~a~~K~p 690 (764)
T PRK12861 611 DAEQIAEFTIAAARQMEWLNLTPKVALLSRSNFGSGSAASGVKMRRALEIVREQAPDLEADGEMHGDCALDEGLRARLLP 690 (764)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCeEEEEeccccCCCCCCchhHHHHHHHHHHhhCCCcEEEecCcHHHhCCHHHHHhcCC
Confidence 334455566777888876542 46776653333 1112245566665555578987776 445786543321
Q ss_pred cC--CCCccEEEeCCC-cchhhhhhhhhccCC
Q psy8787 245 QD--PTQYDVLVMPNL-YGDILSDMCAGLVGG 273 (364)
Q Consensus 245 ~~--P~~fdVivt~Nl-~GDIlSD~aa~l~G~ 273 (364)
.+ -+.-||+|+||+ =|||+-.+.-.+.|+
T Consensus 691 ~s~vaG~ANVLVfPnLeAGNI~yKll~~l~g~ 722 (764)
T PRK12861 691 MSPLKGAANLLVCPNVDAGNIAYNLLKTEAGS 722 (764)
T ss_pred CCcCCCcCCEEEECCcchhhHHHHHHHHHcCC
Confidence 12 257789999999 599999988877754
No 84
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=41.86 E-value=2e+02 Score=26.04 Aligned_cols=63 Identities=11% Similarity=0.058 Sum_probs=33.8
Q ss_pred HHHHhCCCCceEEEEeCcccccccHHHHH---------------HHHHHhhcCCCeeEeeE--eHHHHHHHHhcCCCCcc
Q psy8787 189 EYAKTNNRSKVTAVHKANIMRMSDGLFLR---------------CCRDAAEKFPEVKFEEK--YLDTVCLNMVQDPTQYD 251 (364)
Q Consensus 189 ~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~---------------~~~~va~~yp~i~~~~~--~vD~~~~~lv~~P~~fd 251 (364)
.+|+. |-++++++|...+-. + .|-|+ ..+++.+-+|+++++.. .++.. .+..--..||
T Consensus 39 ~La~~-Gv~~i~lvD~d~ve~-s-NL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~i~~~--~~~~~~~~~D 113 (202)
T TIGR02356 39 YLAGA-GVGTIVIVDDDHVDL-S-NLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKERVTAE--NLELLINNVD 113 (202)
T ss_pred HHHHc-CCCeEEEecCCEEcc-c-chhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehhcCCHH--HHHHHHhCCC
Confidence 34443 667899999775532 2 23333 22345556788776644 34332 1212224789
Q ss_pred EEEeC
Q psy8787 252 VLVMP 256 (364)
Q Consensus 252 Vivt~ 256 (364)
+||..
T Consensus 114 ~Vi~~ 118 (202)
T TIGR02356 114 LVLDC 118 (202)
T ss_pred EEEEC
Confidence 77754
No 85
>TIGR02709 branched_ptb branched-chain phosphotransacylase. This model distinguishes branched-chain phosphotransacylases like that of Enterococcus faecalis from closely related subfamilies of phosphate butyryltransferase (EC 2.3.1.19) (TIGR02706) and phosphate acetyltransferase (EC 2.3.1.8) (TIGR00651). Members of this family and of TIGR02706 show considerable crossreactivity, and the occurrence of a member of either family near an apparent leucine dehydrogenase will suggest activity on branched chain-acyl-CoA compounds.
Probab=40.50 E-value=3.5e+02 Score=26.20 Aligned_cols=130 Identities=19% Similarity=0.116 Sum_probs=72.3
Q ss_pred cHHHHHHHHHHHHHHHHhCCC--CceEEEEeC---ccc-ccccHHHHHHHHHHhhcCCCeeEeeE-eHHHHHHH------
Q psy8787 176 TEEASSRVAEFAFEYAKTNNR--SKVTAVHKA---NIM-RMSDGLFLRCCRDAAEKFPEVKFEEK-YLDTVCLN------ 242 (364)
Q Consensus 176 t~~~~eriar~Af~~A~~~~~--~~Vt~v~Ka---Nv~-~~~~~lf~~~~~~va~~yp~i~~~~~-~vD~~~~~------ 242 (364)
|-+.-..|++.|-+.|++-|. .||.++.=. |-- +.+ .--++.. ++.++-|+..++-- .+|++.-.
T Consensus 125 ~~eqk~~I~~nA~~~ar~lGie~PkVAlLS~se~~s~~~~st-~~a~~l~-~~~~~~~~~~vdGpl~~D~Al~~e~a~~K 202 (271)
T TIGR02709 125 TQATLIEIVENAKEVAQKLGLHHPKIALLSAAENFNPKMPSS-VLAKEVT-AHFNDQQEATVFGPLSLDLATSEEAVAHK 202 (271)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCCeEEEEecccCCCCCCchH-HHHHHHH-HHHHhCCCCEEEecCchhhhcCHHHHHhh
Confidence 556677788999999987764 567666533 221 111 1223333 33333377776544 36665422
Q ss_pred HhcCC--CCccEEEeCCCc-chhhhhhhhhccCCCCcccccccCCCceeEeeccCCCCCccCCCCCChhHHHHHHHHHHH
Q psy8787 243 MVQDP--TQYDVLVMPNLY-GDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGTAPDIAGKDLANPTALLLSAVMMLR 319 (364)
Q Consensus 243 lv~~P--~~fdVivt~Nl~-GDIlSD~aa~l~G~lGl~psa~ig~~~~~fEp~HGsapdiaGk~~aNP~a~ils~ammL~ 319 (364)
-..+| ++-||+|.||+- |||+--+.-.+. +. -..+.-+|.. -|+|=+... .++-.-+.|.++.+|
T Consensus 203 ~~~s~vaG~AniLI~PnleaGNi~yK~l~~~~-~~-~~ggil~G~~----~PV~~~SR~------~s~~~~~~siala~~ 270 (271)
T TIGR02709 203 RYSGPIMGDADILVVPTIDVGNCLYKSLTLFG-HA-KVGGTIVGTK----VPVVLTSRS------DSTESKFHSLRFAMR 270 (271)
T ss_pred CCCCCCCCcCCEEEcCChHHHHHHHHHHHHhc-CC-eEEcccccCC----CCEEECCCC------CCHHHHHHHHHHHhc
Confidence 22333 577899999997 999888776554 42 2333344544 354433221 233445556665554
No 86
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=40.31 E-value=1e+02 Score=33.08 Aligned_cols=104 Identities=13% Similarity=0.172 Sum_probs=67.5
Q ss_pred EEEEEEEecHHHHHH-HHHHHHHHHHh--CCCC--------ceEEEEeCcccccccHHHHHHHHHHhhcCCCeeEeeE--
Q psy8787 168 VVQSIKLITEEASSR-VAEFAFEYAKT--NNRS--------KVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEK-- 234 (364)
Q Consensus 168 ~a~~~~~~t~~~~er-iar~Af~~A~~--~~~~--------~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp~i~~~~~-- 234 (364)
++..+.-.+-.+.|| +.|.|.+.|+. .++| +|+++-.+=--+....+|.+..++ +.-|..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 241 (578)
T PRK15490 164 LALCTGSLGSGGAERQISRLAIEIARKYRQKGKIGGLKVEEPVELIIRSLTPELRQDFFLKEVLE--EQVEVLEIAKITG 241 (578)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHHHHHhcccccccccccceeEEEeecCcccCcchhHHHHHh--cCCceEEeeccch
Confidence 555566666677776 67788888864 2334 788888776656666799988877 23333333322
Q ss_pred -eHHHH------------------------HHHHhcCCCCccEEEeCCCcchhhhhhhhhccCCC
Q psy8787 235 -YLDTV------------------------CLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGL 274 (364)
Q Consensus 235 -~vD~~------------------------~~~lv~~P~~fdVivt~Nl~GDIlSD~aa~l~G~l 274 (364)
+.|.+ .+.+++ -.++|||-|-|+...++.-++|-++|-.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ir-~~rpDIVHt~~~~a~l~g~laA~lagvp 305 (578)
T PRK15490 242 NLFDDATIESPELRLLLSHLPPVCKYGIKHLVPHLC-ERKLDYLSVWQDGACLMIALAALIAGVP 305 (578)
T ss_pred hhhhhccccchHHHHHHhcCChHHHHHHHHHHHHHH-HcCCCEEEEcCcccHHHHHHHHHhcCCC
Confidence 12222 123333 3788999999988888888888887643
No 87
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=40.28 E-value=2.2e+02 Score=25.75 Aligned_cols=76 Identities=16% Similarity=0.166 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhhcCCCeeEeeEe----HHH---HHHHHhcCCCCcc
Q psy8787 179 ASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKY----LDT---VCLNMVQDPTQYD 251 (364)
Q Consensus 179 ~~eriar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp~i~~~~~~----vD~---~~~~lv~~P~~fd 251 (364)
+....+++..+.. .|.+++.++.-. -.. +.....+-+++..+++|++++.... .+. .+..+++....++
T Consensus 106 ~g~~~~~~l~~~~--~g~~~i~~i~~~-~~~-~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 181 (267)
T cd06322 106 GGVLAGELAAKVL--NGKGQVAIIDYP-TVQ-SVVDRVRGFKEALADYPNIKIVAVQPGITRAEALTAAQNILQANPDLD 181 (267)
T ss_pred HHHHHHHHHHHHh--CCCceEEEEecC-CCc-cHHHHHHHHHHHHHhCCCcEEEEecCCCChHHHHHHHHHHHHhCCCCC
Confidence 3444444443332 255677777532 222 2234556666666677776643221 122 2445665545789
Q ss_pred EEEeCCC
Q psy8787 252 VLVMPNL 258 (364)
Q Consensus 252 Vivt~Nl 258 (364)
+|++.|-
T Consensus 182 ai~~~~d 188 (267)
T cd06322 182 GIFAFGD 188 (267)
T ss_pred EEEEcCC
Confidence 9999774
No 88
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=39.26 E-value=1.7e+02 Score=26.40 Aligned_cols=79 Identities=14% Similarity=0.105 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhhcCCCeeEee-----EeHH---HHHHHHhcCCC
Q psy8787 177 EEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEE-----KYLD---TVCLNMVQDPT 248 (364)
Q Consensus 177 ~~~~eriar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp~i~~~~-----~~vD---~~~~~lv~~P~ 248 (364)
+......+++..+... |.+++.++.-..-.. +...+.+-+++..++|+++++.. ...+ ..+.++++++.
T Consensus 104 ~~~~~~~~~~l~~~~~--g~~~i~~l~~~~~~~-~~~~r~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 180 (268)
T cd06323 104 VAGGKMAAEYLVKLLG--GKGKVVELQGIPGAS-AARERGKGFHEVVDKYPGLKVVASQPADFDRAKGLNVMENILQAHP 180 (268)
T ss_pred HHHHHHHHHHHHHHhC--CCceEEEEeCCCCCc-cHHHHHHHHHHHHHhCCCcEEEecccCCCCHHHHHHHHHHHHHHCC
Confidence 3445556665554431 456777764222111 23345566666656666665431 1111 23556676666
Q ss_pred CccEEEeCCC
Q psy8787 249 QYDVLVMPNL 258 (364)
Q Consensus 249 ~fdVivt~Nl 258 (364)
.+|.|++.|=
T Consensus 181 ~~~ai~~~~d 190 (268)
T cd06323 181 DIKGVFAQND 190 (268)
T ss_pred CcCEEEEcCC
Confidence 7898888763
No 89
>KOG0907|consensus
Probab=39.02 E-value=79 Score=25.98 Aligned_cols=57 Identities=23% Similarity=0.313 Sum_probs=40.4
Q ss_pred CceEEEE-eCcccccccHHHHHHHHHHhhcCCCeeEeeEeHHHHHHHHhcCCCCccEEEeCCC
Q psy8787 197 SKVTAVH-KANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLDTVCLNMVQDPTQYDVLVMPNL 258 (364)
Q Consensus 197 ~~Vt~v~-KaNv~~~~~~lf~~~~~~va~~yp~i~~~~~~vD~~~~~lv~~P~~fdVivt~Nl 258 (364)
++++++| .|.... .+....-.+.+++++||++.+=..-+|. +..+. ..|+|-.+|.+
T Consensus 21 ~kliVvdF~a~wCg-PCk~i~P~~~~La~~y~~v~Flkvdvde-~~~~~---~~~~V~~~PTf 78 (106)
T KOG0907|consen 21 DKLVVVDFYATWCG-PCKAIAPKFEKLAEKYPDVVFLKVDVDE-LEEVA---KEFNVKAMPTF 78 (106)
T ss_pred CCeEEEEEECCCCc-chhhhhhHHHHHHHHCCCCEEEEEeccc-CHhHH---HhcCceEeeEE
Confidence 4555554 555554 4566677888999999999999999999 55555 34567777765
No 90
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=38.97 E-value=1.1e+02 Score=28.75 Aligned_cols=70 Identities=9% Similarity=0.105 Sum_probs=36.1
Q ss_pred HHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhhcCCCeeEe-------eEeHH---HHHHHHhcCCCCccEEEe
Q psy8787 186 FAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFE-------EKYLD---TVCLNMVQDPTQYDVLVM 255 (364)
Q Consensus 186 ~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp~i~~~-------~~~vD---~~~~~lv~~P~~fdVivt 255 (364)
.|.++..++|.+++.++.-.+-.. +...+.+-|++..+++ +++++ ..-.| .+..++++.+..+|.|++
T Consensus 142 ~a~~~l~~~G~~~I~~l~~~~~~~-~~~~R~~Gf~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~ 219 (309)
T PRK11041 142 EAVNYLHELGHKRIACIAGPEEMP-LCHYRLQGYVQALRRC-GITVDPQYIARGDFTFEAGAKALKQLLDLPQPPTAVFC 219 (309)
T ss_pred HHHHHHHHcCCceEEEEeCCcccc-chHHHHHHHHHHHHHc-CCCCCHHHeEeCCCCHHHHHHHHHHHHcCCCCCCEEEE
Confidence 444545556777888775332222 2233445555544443 22211 11112 345567776667999998
Q ss_pred CC
Q psy8787 256 PN 257 (364)
Q Consensus 256 ~N 257 (364)
.|
T Consensus 220 ~~ 221 (309)
T PRK11041 220 HS 221 (309)
T ss_pred cC
Confidence 75
No 91
>TIGR02706 P_butyryltrans phosphate butyryltransferase. Members of this family are phosphate butyryltransferase, also called phosphotransbutyrylase. In general, this enzyme is found in butyrate-producing anaerobic bacteria, encoded next to the gene for butyrate kinase. Together, these two enzymes represent what may be the less common of two pathways for butyrate production from butyryl-CoA. The alternative is transfer of the CoA group to acetate by butyryl-CoA:acetate CoA transferase. Cutoffs for this model are set such that the homolog from Thermotoga maritima, whose activity on butyryl-CoA is only 30 % of its activity with acetyl-CoA, scores in the zone between trusted and noice cutoffs.
Probab=37.97 E-value=2.7e+02 Score=26.97 Aligned_cols=125 Identities=12% Similarity=0.080 Sum_probs=67.7
Q ss_pred cHHHHHHHHHHHHHHHHhCCC--CceEEEEeCcccccccHHHHHHHHH--Hh--hcCCCeeEee-EeHHHHHHH-H--hc
Q psy8787 176 TEEASSRVAEFAFEYAKTNNR--SKVTAVHKANIMRMSDGLFLRCCRD--AA--EKFPEVKFEE-KYLDTVCLN-M--VQ 245 (364)
Q Consensus 176 t~~~~eriar~Af~~A~~~~~--~~Vt~v~KaNv~~~~~~lf~~~~~~--va--~~yp~i~~~~-~~vD~~~~~-l--v~ 245 (364)
|.+.-..|+..|.++|+.-|. .||-+..=.+--......-++.++- .. .+||+..++- +..|++.-. . .+
T Consensus 145 ~~e~l~~ia~~a~~~ar~lGie~PrVAlLs~g~e~~kg~~~~~eA~~L~~~~~~~~~~~~~vdG~l~~D~A~~~~~a~~k 224 (294)
T TIGR02706 145 ELKDKVQIINNAVKVAHAIGIDVPKVAPLAAVEVVNPKMPATVDAAALAKMSDRGQIKGCIVDGPLALDNAISEEAAKHK 224 (294)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCcccCCCCChHHHHHHHHHHHHhcCCCCCeEEEechHHHHhcCHHHHHHh
Confidence 445566677788899986553 5676663222111122233333321 12 2457877753 457877322 1 22
Q ss_pred CC-----CCccEEEeCCCc-chhhhhhhhhccCCCCcccccccCCCceeEeeccCCCCCccCCCCCC
Q psy8787 246 DP-----TQYDVLVMPNLY-GDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGTAPDIAGKDLAN 306 (364)
Q Consensus 246 ~P-----~~fdVivt~Nl~-GDIlSD~aa~l~G~lGl~psa~ig~~~~~fEp~HGsapdiaGk~~aN 306 (364)
.| ++.||+|.||+. |||+--+...+.|+ . ..+.-+|.. -|+|=+.+.---+++.|
T Consensus 225 ~~~s~v~g~Anvli~P~l~agNi~~K~~~~~~~~-~-~g~il~G~~----~Pv~~~sR~~s~~~~~~ 285 (294)
T TIGR02706 225 GIEGEVAGKADILLVPDIEAGNVLYKTLTYFAKS-K-NGGILVGTK----APVVLTSRADSFETKLN 285 (294)
T ss_pred CCCCCCCCcCCEEEeCChHHHHHHHHHHHHhcCC-c-EeceeecCC----CCeEECCCCCCHHHHHH
Confidence 22 577999999997 99988877766543 3 333344443 35554333322344555
No 92
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=37.79 E-value=2.1e+02 Score=26.14 Aligned_cols=61 Identities=15% Similarity=0.135 Sum_probs=32.5
Q ss_pred CCCceEEEE-eCcccccccHHHHHHHHHHhhcCCCeeEeeEe-----H---HHHHHHHhcCCCCccEEEeCC
Q psy8787 195 NRSKVTAVH-KANIMRMSDGLFLRCCRDAAEKFPEVKFEEKY-----L---DTVCLNMVQDPTQYDVLVMPN 257 (364)
Q Consensus 195 ~~~~Vt~v~-KaNv~~~~~~lf~~~~~~va~~yp~i~~~~~~-----v---D~~~~~lv~~P~~fdVivt~N 257 (364)
|++++.++. ..+.. +.....+-+++..+++|++++.... . -....++++++..+|.|++.|
T Consensus 121 g~~~i~~l~~~~~~~--~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~ 190 (275)
T cd06320 121 EGGKVAIIEGKAGAF--AAEQRTEGFTEAIKKASGIEVVASQPADWDREKAYDVATTILQRNPDLKAIYCNN 190 (275)
T ss_pred CCceEEEEeCCCCCc--cHHHHHHHHHHHHhhCCCcEEEEecCCCccHHHHHHHHHHHHHhCCCccEEEECC
Confidence 556777653 22222 1123335555555556666543211 1 124456776666789998876
No 93
>COG0723 QcrA Rieske Fe-S protein [Energy production and conversion]
Probab=37.37 E-value=25 Score=31.39 Aligned_cols=41 Identities=34% Similarity=0.556 Sum_probs=28.3
Q ss_pred hhhhhhhccCCCCcccccc-cCCCceeEeeccCCCCCccCCCCCCh
Q psy8787 263 LSDMCAGLVGGLGLTPSGN-IGLNGALFESVHGTAPDIAGKDLANP 307 (364)
Q Consensus 263 lSD~aa~l~G~lGl~psa~-ig~~~~~fEp~HGsapdiaGk~~aNP 307 (364)
+|.+|.. ||-.|..| -++++.+|.|+|||.-|..|+-+-.|
T Consensus 104 ~~~iCtH----lGC~~~~~~~~~~~~~~CPCHGS~yd~~g~vv~GP 145 (177)
T COG0723 104 YSAICTH----LGCTVPWNNAGAEGGFFCPCHGSRYDPDGGVVKGP 145 (177)
T ss_pred EeeeccC----CCCccCcccCCCCCeEEccCCCCeEcCCCCeeCCC
Confidence 4455555 56666664 33456899999999999998854444
No 94
>cd03470 Rieske_cytochrome_bc1 Iron-sulfur protein (ISP) component of the bc(1) complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The bc(1) complex is a multisubunit enzyme found in many different organisms including uni- and multi-cellular eukaryotes, plants (in their mitochondria) and bacteria. The cytochrome bc(1) and b6f complexes are central components of the respiratory and photosynthetic electron transport chains, respectively, which carry out similar core electron and proton transfer steps. The bc(1) and b6f complexes share a common core structure of three catalytic subunits: cyt b, the Rieske ISP, and either a cyt c1 in the bc(1) complex or cyt f in the b6f complex, which are arranged in an integral membrane-bound dimeric complex. While the core of the b6f complex is similar to that of the bc(1) complex, the domain arrangement outside the core and the complement of prosthetic groups are strikingly different.
Probab=35.82 E-value=22 Score=30.22 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=19.6
Q ss_pred CCceeEeeccCCCCCccCCCCCCh
Q psy8787 284 LNGALFESVHGTAPDIAGKDLANP 307 (364)
Q Consensus 284 ~~~~~fEp~HGsapdiaGk~~aNP 307 (364)
....++.|.|||.-|++|+-+..|
T Consensus 82 ~~~~~~CPcHgs~Fdl~G~~~~gP 105 (126)
T cd03470 82 DYGGFFCPCHGSHYDASGRIRKGP 105 (126)
T ss_pred CCCEEEecCcCCEECCCCeEecCC
Confidence 345899999999999999876555
No 95
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=32.88 E-value=2.8e+02 Score=27.55 Aligned_cols=75 Identities=16% Similarity=0.218 Sum_probs=38.2
Q ss_pred HHHHHHhCCCCceEEEEeCc-----ccccccHHHHH-----------H-HHHHhhcCCCeeEeeEeHHH---HHHHHhcC
Q psy8787 187 AFEYAKTNNRSKVTAVHKAN-----IMRMSDGLFLR-----------C-CRDAAEKFPEVKFEEKYLDT---VCLNMVQD 246 (364)
Q Consensus 187 Af~~A~~~~~~~Vt~v~KaN-----v~~~~~~lf~~-----------~-~~~va~~yp~i~~~~~~vD~---~~~~lv~~ 246 (364)
|-.+|+. |-.+++++|.-. .-+. -+|.+ . .+++.+-+|+++++....|. -...++
T Consensus 40 a~~La~a-Gvg~i~lvD~D~ve~sNL~RQ--~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~~~~~~~~~~~~~~-- 114 (338)
T PRK12475 40 AEALVRA-GIGKLTIADRDYVEWSNLQRQ--QLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPVVTDVTVEELEELV-- 114 (338)
T ss_pred HHHHHHc-CCCEEEEEcCCcccccccCcc--ccccHHHccCCccHHHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHh--
Confidence 3344443 667899988653 3331 12211 1 13344557998887765432 223343
Q ss_pred CCCccEEEeC--CCcch-hhhhhh
Q psy8787 247 PTQYDVLVMP--NLYGD-ILSDMC 267 (364)
Q Consensus 247 P~~fdVivt~--Nl~GD-IlSD~a 267 (364)
+++|+||.. |.--. +++|+|
T Consensus 115 -~~~DlVid~~D~~~~r~~in~~~ 137 (338)
T PRK12475 115 -KEVDLIIDATDNFDTRLLINDLS 137 (338)
T ss_pred -cCCCEEEEcCCCHHHHHHHHHHH
Confidence 568966643 33222 245555
No 96
>PF01515 PTA_PTB: Phosphate acetyl/butaryl transferase; InterPro: IPR002505 This entry contains both phosphate acetyltransferase 2.3.1.8 from EC: Acetyl-CoA + phosphate = CoA + acetyl phosphate and phosphate butaryltransferase 2.3.1.19 from EC: Butanoyl-CoA + phosphate = CoA + butanoyl phosphate These enzymes catalyse the transfer of an acetyl or butaryl group to orthophosphate.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 2AF3_D 1QZT_D 2AF4_D 1VMI_A 3UF6_B 3U9E_A 3TNG_A 4E4R_A 1R5J_A 1YCO_A ....
Probab=32.09 E-value=1.3e+02 Score=29.79 Aligned_cols=97 Identities=26% Similarity=0.281 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHhCC--CCceEEEEeCcccccc---cHHHHHHHHHHhhcCCCeeEe-eEeHHHHHHHHh------
Q psy8787 177 EEASSRVAEFAFEYAKTNN--RSKVTAVHKANIMRMS---DGLFLRCCRDAAEKFPEVKFE-EKYLDTVCLNMV------ 244 (364)
Q Consensus 177 ~~~~eriar~Af~~A~~~~--~~~Vt~v~KaNv~~~~---~~lf~~~~~~va~~yp~i~~~-~~~vD~~~~~lv------ 244 (364)
.+.-..|+..|.+.|++-| ..||.++.=+|..... -.--++..+-+.+.+|+..++ ++.+|++.-.=+
T Consensus 174 ~e~la~Ia~~aa~~~~~~g~~~PkvA~LS~s~~gs~~~~s~~~~~~a~~~~~~~~~~~~vdGe~q~D~Al~~~~~~~k~~ 253 (319)
T PF01515_consen 174 AEQLAEIAENAAETARRFGIEEPKVALLSYSEFGSPKGPSTDKVREAVEIAREKQPDLIVDGEMQFDAALSPEVAAKKYP 253 (319)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSS-EEEEE-SSSTTSSTSHHHHHHHHHHHHHHHHCTTSEEEEEE-HHHHH-HHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCeEEEEeCccCCCCCCchHHHHHHHHHHHHhhCCCceecCccccchhcCHHHHHHhCC
Confidence 3445567778888888766 3578877766655311 123334333344568987776 556888763322
Q ss_pred cCC--CCccEEEeCCCc-chhhhhhhhhccCC
Q psy8787 245 QDP--TQYDVLVMPNLY-GDILSDMCAGLVGG 273 (364)
Q Consensus 245 ~~P--~~fdVivt~Nl~-GDIlSD~aa~l~G~ 273 (364)
.+| +.-||+|.||+. |+|+--+...+.|+
T Consensus 254 ~s~v~G~AnvLIfPnl~agNi~~K~l~~~~~~ 285 (319)
T PF01515_consen 254 FSPVAGDANVLIFPNLEAGNIAYKLLQRLGGA 285 (319)
T ss_dssp TSSTTTC-SEEE-SSHHHHHHHHHHHHHTTTE
T ss_pred CCccCCcCCEEEeCChhHhHHHHHHHHHhhCc
Confidence 222 568899999997 99999888877764
No 97
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=32.05 E-value=2.3e+02 Score=25.54 Aligned_cols=74 Identities=9% Similarity=0.016 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhhcC-CCe-----eEeeEeHH---HHHHHHhcCCCCccEE
Q psy8787 183 VAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKF-PEV-----KFEEKYLD---TVCLNMVQDPTQYDVL 253 (364)
Q Consensus 183 iar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~y-p~i-----~~~~~~vD---~~~~~lv~~P~~fdVi 253 (364)
-.+.|.++..++|.+++.++.-. -...+.....+-|++..+++ ..+ .......+ ..+.++++....+|+|
T Consensus 105 ~g~~a~~~l~~~g~~~i~~i~~~-~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 183 (270)
T cd01545 105 AAREMTRHLIDLGHRRIAFIAGP-PDHRASAERLEGYRDALAEAGLPLDPELVAQGDFTFESGLEAAEALLALPDRPTAI 183 (270)
T ss_pred HHHHHHHHHHHCCCceEEEEeCC-CCchhHHHHHHHHHHHHHHcCCCCChhhEEeCCCChhhHHHHHHHHHhCCCCCCEE
Confidence 34455555666677788887622 21111111122334333322 111 11111122 3445677654578999
Q ss_pred EeCC
Q psy8787 254 VMPN 257 (364)
Q Consensus 254 vt~N 257 (364)
++.|
T Consensus 184 ~~~~ 187 (270)
T cd01545 184 FASN 187 (270)
T ss_pred EEcC
Confidence 9876
No 98
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=31.07 E-value=3.5e+02 Score=24.85 Aligned_cols=77 Identities=12% Similarity=0.112 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCCceEEEEe-CcccccccHHHHHHHHHHhhcCCCeeEeeE-----eHH---HHHHHHhcCC
Q psy8787 177 EEASSRVAEFAFEYAKTNNRSKVTAVHK-ANIMRMSDGLFLRCCRDAAEKFPEVKFEEK-----YLD---TVCLNMVQDP 247 (364)
Q Consensus 177 ~~~~eriar~Af~~A~~~~~~~Vt~v~K-aNv~~~~~~lf~~~~~~va~~yp~i~~~~~-----~vD---~~~~~lv~~P 247 (364)
+++.+..+++-.+.. .|.++|.++.- .+.. ......+-|++..++++++++... -.+ ....++++..
T Consensus 106 ~~~g~~~~~~l~~~~--~g~~~i~~l~g~~~~~--~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 181 (272)
T cd06313 106 YFMGASVAQALCNAM--GGKGKIAMLQGALGHT--GAQGRAQGFNDVIKKYPDIEVVDEQPANWDVSKAARIWETWLTKY 181 (272)
T ss_pred HHHHHHHHHHHHHHc--CCCceEEEEECCCCCc--chhHHHHHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHHHHHHhC
Confidence 344555555544432 15567776642 2222 223455556665566664443221 111 2334444433
Q ss_pred CCccEEEeCC
Q psy8787 248 TQYDVLVMPN 257 (364)
Q Consensus 248 ~~fdVivt~N 257 (364)
..+|+|++.|
T Consensus 182 ~~~~ai~~~n 191 (272)
T cd06313 182 PQLDGAFCHN 191 (272)
T ss_pred CCCCEEEECC
Confidence 3589999987
No 99
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=30.34 E-value=2.5e+02 Score=25.50 Aligned_cols=18 Identities=6% Similarity=0.217 Sum_probs=12.8
Q ss_pred HHHHhcCCCCccEEEeCC
Q psy8787 240 CLNMVQDPTQYDVLVMPN 257 (364)
Q Consensus 240 ~~~lv~~P~~fdVivt~N 257 (364)
+..+++....+|+|++.|
T Consensus 168 ~~~~l~~~~~~~ai~~~~ 185 (268)
T cd06270 168 MQELLARGAPFTAVFCAN 185 (268)
T ss_pred HHHHHhCCCCCCEEEEcC
Confidence 345565555689999998
No 100
>KOG3812|consensus
Probab=29.82 E-value=2.4e+02 Score=28.51 Aligned_cols=126 Identities=13% Similarity=0.095 Sum_probs=0.0
Q ss_pred EEEEcccccc--------------hhhhcccceeeeeeeccCCCCCCC----CCccEEEEccCCCccccCceeeeeCCEE
Q psy8787 108 YATKWFSERG--------------ASVEFNLYANVRPCRSLEGYPTLY----DDVDVVTIRENTEGEYSGIEHEIVDGVV 169 (364)
Q Consensus 108 aiLkGav~~g--------------LR~~ldlyanvRP~~~~pg~~~~~----~~iD~vIvREnteg~Y~g~~~~~~~~~a 169 (364)
++|.||.-++ |.+.||.-.++--|+.-=++..+. +.--.+|.|.|+
T Consensus 178 vVLvGPsLkgyevTdmmqkAlfd~lkhrF~grisitrVtaDIslakrS~lnnp~k~~~~eRsn~---------------- 241 (475)
T KOG3812|consen 178 VVLVGPSLKGYEVTDMMQKALFDFLKHRFDGRISITRVTADISLAKRSVLNNPSKRAIIERSNT---------------- 241 (475)
T ss_pred eEEecCccccccHHHHHHHHHHHHHHHhcCCceeEEEEeechhhhhhhhccCccceeeeeeccc----------------
Q ss_pred EEEEEecHHHHHHHHHHHHHHHHhCCCCceEEEEeCcccccccHHHH---------------HHHHHHhhcCCCeeEeeE
Q psy8787 170 QSIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFL---------------RCCRDAAEKFPEVKFEEK 234 (364)
Q Consensus 170 ~~~~~~t~~~~eriar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~---------------~~~~~va~~yp~i~~~~~ 234 (364)
..+-..+..=++.-||+|+. -.+.++|--.|- +-+.+-+ ++.+++-+.-..-...|+
T Consensus 242 ----RsslaevqsEiErIfelars---LqLvvlDadtIn-hPaql~ktsLaPI~v~ikvSspKvLqrLirsrGksq~K~l 313 (475)
T KOG3812|consen 242 ----RSSLAEVQSEIERIFELARS---LQLVVLDADTIN-HPAQLAKTSLAPIIVYIKVSSPKVLQRLIRSRGKSQSKHL 313 (475)
T ss_pred ----hhhHHHHHHHHHHHHHHHhh---ceEEEecCCcCC-CHHHhccCCCcceEEEEEeCCHHHHHHHHHhcCchhhhhc
Q ss_pred eHHHHHHHHhcC--CCCccEEEeCC
Q psy8787 235 YLDTVCLNMVQD--PTQYDVLVMPN 257 (364)
Q Consensus 235 ~vD~~~~~lv~~--P~~fdVivt~N 257 (364)
.+|-++..=... |+.||||+-+|
T Consensus 314 nvq~va~~klaQc~~e~FdvildEN 338 (475)
T KOG3812|consen 314 NVQMVAADKLAQCPPEGFDVILDEN 338 (475)
T ss_pred hHhhhhcchhhhCChhhhheeeccc
No 101
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=29.60 E-value=2.3e+02 Score=25.89 Aligned_cols=76 Identities=9% Similarity=0.053 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhC--CCCceEEEEeCcccccccHHHHHHHHHHhhcCCCeeEeeE-----eHH---HHHHHHhc-CCCCcc
Q psy8787 183 VAEFAFEYAKTN--NRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEK-----YLD---TVCLNMVQ-DPTQYD 251 (364)
Q Consensus 183 iar~Af~~A~~~--~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp~i~~~~~-----~vD---~~~~~lv~-~P~~fd 251 (364)
.++.+.++..++ |.+++.++.-..-.. ......+-+++..+++++++.... -.+ .+..++++ +|..+|
T Consensus 109 ~g~~~~~~l~~~~~g~~~i~~i~~~~~~~-~~~~R~~Gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 187 (273)
T cd06309 109 EGRRAADWLAKATGGKGNIVELQGTVGSS-VAIDRKKGFAEVIKKYPNMKIVASQTGDFTRAKGKEVMEALLKAHGDDID 187 (273)
T ss_pred HHHHHHHHHHHHcCCCceEEEEeCCCCCc-hHHHHHHHHHHHHHHCCCCEEeeccCCcccHHHHHHHHHHHHHhCCCCcc
Confidence 344444444443 566777775221111 223444555554455665443211 112 23456664 465799
Q ss_pred EEEeCCCc
Q psy8787 252 VLVMPNLY 259 (364)
Q Consensus 252 Vivt~Nl~ 259 (364)
+|++.|-.
T Consensus 188 aI~~~~d~ 195 (273)
T cd06309 188 AVYAHNDE 195 (273)
T ss_pred EEEECCcH
Confidence 99998743
No 102
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=29.23 E-value=2.9e+02 Score=25.01 Aligned_cols=77 Identities=8% Similarity=-0.021 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhhcCCCeeEeeEeH----------HHHHHHHhcC
Q psy8787 177 EEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYL----------DTVCLNMVQD 246 (364)
Q Consensus 177 ~~~~eriar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp~i~~~~~~v----------D~~~~~lv~~ 246 (364)
....+..+++..+... |+++|.+++-.+. . +.....+.+++..++++++.+...+. -..+.++++.
T Consensus 103 ~~~g~~~~~~l~~~~~--g~~~i~~i~~~~~-~-~~~~R~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 178 (273)
T cd06305 103 YSLARLSLDQLVKDLG--GKGNVGYVNVAGF-P-PLDRRYDVWQAVLKAYPGIKEVAELGDVSNNTAQDAAAQVEAVLKK 178 (273)
T ss_pred HHHHHHHHHHHHHHhC--CCCCEEEEEccCC-c-hHHHHHHHHHHHHHHCCCcEEecccccccccchhHHHHHHHHHHHH
Confidence 3445556666555433 4567777652211 1 11222234455556677544333221 1234455554
Q ss_pred CCCc--cEEEeCC
Q psy8787 247 PTQY--DVLVMPN 257 (364)
Q Consensus 247 P~~f--dVivt~N 257 (364)
.... +.|++.|
T Consensus 179 ~~~~~~~ai~~~~ 191 (273)
T cd06305 179 YPKGGIDAIWAAW 191 (273)
T ss_pred CCCcccCeEEEcC
Confidence 4456 8888875
No 103
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=29.19 E-value=3e+02 Score=24.78 Aligned_cols=74 Identities=12% Similarity=-0.007 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhhcCC---Ce-eEeeE--e---HHHHHHHHhcCCCCccEE
Q psy8787 183 VAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFP---EV-KFEEK--Y---LDTVCLNMVQDPTQYDVL 253 (364)
Q Consensus 183 iar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp---~i-~~~~~--~---vD~~~~~lv~~P~~fdVi 253 (364)
..+.|.++..++|.++|.++.- +-...+...+.+-|++..+++. .. .+... - .-.+..++++....+|+|
T Consensus 109 ~g~~~~~~l~~~g~~~i~~i~~-~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai 187 (270)
T cd06294 109 AGYDATEYLIKLGHKKIAFVGG-DLDLEVTQDRLQGYKQALEDHGIPDRNEVIISLDFSEEGGYKALKKLLEQHPRPTAI 187 (270)
T ss_pred HHHHHHHHHHHcCCccEEEecC-CcccHHHHHHHHHHHHHHHHcCCCCCcceEEecCCchHHHHHHHHHHHhCCCCCCEE
Confidence 3344445555556678887752 1111122334455555555442 11 11111 1 112344566655679999
Q ss_pred EeCC
Q psy8787 254 VMPN 257 (364)
Q Consensus 254 vt~N 257 (364)
++.|
T Consensus 188 ~~~~ 191 (270)
T cd06294 188 VATD 191 (270)
T ss_pred EECC
Confidence 9976
No 104
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=28.50 E-value=98 Score=31.49 Aligned_cols=69 Identities=19% Similarity=0.354 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhhcCCCeeEeeEeHHHHHHHHhcCCCCcc------EE
Q psy8787 180 SSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLDTVCLNMVQDPTQYD------VL 253 (364)
Q Consensus 180 ~eriar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp~i~~~~~~vD~~~~~lv~~P~~fd------Vi 253 (364)
.-|++|..|++|+++ ...+.++|--.... +++|-+=.--+.-|....|+|+..=.+|| ||
T Consensus 229 GaRlVRelF~lArek-aPsIIFiDEIDAIg-------------~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI 294 (406)
T COG1222 229 GARLVRELFELAREK-APSIIFIDEIDAIG-------------AKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVI 294 (406)
T ss_pred chHHHHHHHHHHhhc-CCeEEEEechhhhh-------------cccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEE
Confidence 458999999999986 35677776443331 12332222233445666778887777777 78
Q ss_pred EeCCCcchhh
Q psy8787 254 VMPNLYGDIL 263 (364)
Q Consensus 254 vt~Nl~GDIl 263 (364)
.++|-. |||
T Consensus 295 ~ATNR~-D~L 303 (406)
T COG1222 295 MATNRP-DIL 303 (406)
T ss_pred EecCCc-ccc
Confidence 888876 555
No 105
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=28.12 E-value=3.9e+02 Score=24.23 Aligned_cols=74 Identities=9% Similarity=0.085 Sum_probs=36.1
Q ss_pred HHHHHHHHhC--CCCceEEEEeCcccccccHHHHHHHHHHhhcCCCeeEeeEe--------HHHHHHHHhcCCCCccEEE
Q psy8787 185 EFAFEYAKTN--NRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKY--------LDTVCLNMVQDPTQYDVLV 254 (364)
Q Consensus 185 r~Af~~A~~~--~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp~i~~~~~~--------vD~~~~~lv~~P~~fdViv 254 (364)
+.+.++..++ |.+++.++.-..-.. ....+.+-+++..++++++++.... .-.++.++++.....|+|+
T Consensus 112 ~~~~~~l~~~~~g~~~i~~i~~~~~~~-~~~~R~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 190 (272)
T cd06300 112 KQGAEWLVKELGGKGNVLVVRGLAGHP-VDEDRYAGAKEVLKEYPGIKIVGEVYGDWDQAVAQKAVADFLASNPDVDGIW 190 (272)
T ss_pred HHHHHHHHHHcCCCceEEEEECCCCCc-chHHHHHHHHHHHHHCCCcEEEeecCCCCCHHHHHHHHHHHHHhCCCcCEEE
Confidence 3334444333 556777764211111 1123334455544556644432211 1235566665444789999
Q ss_pred eCCCc
Q psy8787 255 MPNLY 259 (364)
Q Consensus 255 t~Nl~ 259 (364)
+.|=.
T Consensus 191 ~~~d~ 195 (272)
T cd06300 191 TQGGD 195 (272)
T ss_pred ecCCC
Confidence 88754
No 106
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=28.09 E-value=1.8e+02 Score=27.56 Aligned_cols=71 Identities=15% Similarity=0.156 Sum_probs=36.1
Q ss_pred HHHHHHHHhCCCCc-eEEEEeC-cccccccHHHHHHHHHHhhcC--C--CeeEe--eEeHH---HHHHHHhcCCCCccEE
Q psy8787 185 EFAFEYAKTNNRSK-VTAVHKA-NIMRMSDGLFLRCCRDAAEKF--P--EVKFE--EKYLD---TVCLNMVQDPTQYDVL 253 (364)
Q Consensus 185 r~Af~~A~~~~~~~-Vt~v~Ka-Nv~~~~~~lf~~~~~~va~~y--p--~i~~~--~~~vD---~~~~~lv~~P~~fdVi 253 (364)
+.|.++-.++|.++ +.++.-. +... ...-++-+++..+++ | +..+. ..-.. .++.+|++++..||.|
T Consensus 107 ~~a~~~Li~~Gh~~~I~~i~~~~~~~~--~~~R~~Gy~~Al~~~Gl~~~~~~i~~~~~~~~~g~~~~~~ll~~~p~idai 184 (279)
T PF00532_consen 107 YEATEYLIKKGHRRPIAFIGGPEDSST--SRERLQGYRDALKEAGLPIDEEWIFEGDFDYESGYEAARELLESHPDIDAI 184 (279)
T ss_dssp HHHHHHHHHTTCCSTEEEEEESTTTHH--HHHHHHHHHHHHHHTTSCEEEEEEEESSSSHHHHHHHHHHHHHTSTT-SEE
T ss_pred HHHHHHHHhcccCCeEEEEecCcchHH--HHHHHHHHHHHHHHcCCCCCcccccccCCCHHHHHHHHHHHHhhCCCCEEE
Confidence 35566666778888 7666543 2221 111222233333333 1 11111 11112 4567888888889999
Q ss_pred EeCC
Q psy8787 254 VMPN 257 (364)
Q Consensus 254 vt~N 257 (364)
+|.|
T Consensus 185 ~~~n 188 (279)
T PF00532_consen 185 FCAN 188 (279)
T ss_dssp EESS
T ss_pred EEeC
Confidence 9988
No 107
>KOG1014|consensus
Probab=27.94 E-value=1e+02 Score=30.52 Aligned_cols=45 Identities=22% Similarity=0.294 Sum_probs=33.0
Q ss_pred HHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhhcCCCeeEeeEeHHH
Q psy8787 185 EFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLDT 238 (364)
Q Consensus 185 r~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp~i~~~~~~vD~ 238 (364)
.+|+|+|+ ||- +|.++- + +..-..++.+|++++|+ +++....+|-
T Consensus 64 ayA~eLAk-rG~-nvvLIs-----R-t~~KL~~v~kEI~~~~~-vev~~i~~Df 108 (312)
T KOG1014|consen 64 AYARELAK-RGF-NVVLIS-----R-TQEKLEAVAKEIEEKYK-VEVRIIAIDF 108 (312)
T ss_pred HHHHHHHH-cCC-EEEEEe-----C-CHHHHHHHHHHHHHHhC-cEEEEEEEec
Confidence 37899997 464 477764 3 55667788888888888 8877777764
No 108
>KOG3040|consensus
Probab=26.99 E-value=2.3e+02 Score=26.82 Aligned_cols=87 Identities=17% Similarity=0.190 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhh-cCC-CeeEee------EeHHHHHHHHhcCCCCcc
Q psy8787 180 SSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAE-KFP-EVKFEE------KYLDTVCLNMVQDPTQYD 251 (364)
Q Consensus 180 ~eriar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~-~yp-~i~~~~------~~vD~~~~~lv~~P~~fd 251 (364)
+......||+.-.+.++..+..+||.--.+..+|+-...---++. ||. +++... .+...+.+-+=.+|+.-
T Consensus 123 ~y~~ln~AFrvL~e~~k~~LIai~kgryykr~~Gl~lgpG~fv~aLeyatg~~a~vvGKP~~~fFe~al~~~gv~p~~a- 201 (262)
T KOG3040|consen 123 SYQRLNRAFRVLLEMKKPLLIAIGKGRYYKRVDGLCLGPGPFVAALEYATGCEATVVGKPSPFFFESALQALGVDPEEA- 201 (262)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEecCceeeeeccccccCchHHHHHhhhccCceEEEecCCCHHHHHHHHHhcCCChHHh-
Confidence 344566799999987666789999999999899998876544443 663 444433 35667766666788776
Q ss_pred EEEeCCCcchhhhhhh
Q psy8787 252 VLVMPNLYGDILSDMC 267 (364)
Q Consensus 252 Vivt~Nl~GDIlSD~a 267 (364)
|++-..+-+|+..-+.
T Consensus 202 VMIGDD~~dDvgGAq~ 217 (262)
T KOG3040|consen 202 VMIGDDLNDDVGGAQA 217 (262)
T ss_pred eEEccccccchhhHhh
Confidence 8887776666654443
No 109
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=26.51 E-value=3.7e+02 Score=24.87 Aligned_cols=73 Identities=16% Similarity=0.224 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhCCCCceEEEE-eCcccccccHHHHHHHHHHhhcC---CCe-eEee-EeHH---HHHHHHhcCCCCccEE
Q psy8787 183 VAEFAFEYAKTNNRSKVTAVH-KANIMRMSDGLFLRCCRDAAEKF---PEV-KFEE-KYLD---TVCLNMVQDPTQYDVL 253 (364)
Q Consensus 183 iar~Af~~A~~~~~~~Vt~v~-KaNv~~~~~~lf~~~~~~va~~y---p~i-~~~~-~~vD---~~~~~lv~~P~~fdVi 253 (364)
.+..|.++-.++|.+++..+. ..+... . .-+.+-|++..+++ +.+ .+.. .-.+ ....+++++...+|+|
T Consensus 105 ~~~~a~~~L~~~G~~~I~~i~~~~~~~~-~-~~R~~gf~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai 182 (269)
T cd06287 105 TARMLLEHLRAQGARQIALIVGSARRNS-Y-LEAEAAYRAFAAEHGMPPVVLRVDEAGGEEAGYAACAQLLAQHPDLDAL 182 (269)
T ss_pred HHHHHHHHHHHcCCCcEEEEeCCccccc-H-HHHHHHHHHHHHHcCCCcceeEecCCCChHHHHHHHHHHHhCCCCCCEE
Confidence 345555666666777887774 322221 1 12223334333332 111 1111 1112 2334566554578999
Q ss_pred EeCC
Q psy8787 254 VMPN 257 (364)
Q Consensus 254 vt~N 257 (364)
+|.|
T Consensus 183 ~~~~ 186 (269)
T cd06287 183 CVPV 186 (269)
T ss_pred EEcC
Confidence 9985
No 110
>PLN03065 isocitrate dehydrogenase (NADP+); Provisional
Probab=26.15 E-value=39 Score=35.36 Aligned_cols=37 Identities=14% Similarity=0.177 Sum_probs=27.5
Q ss_pred CccEEEEccCCCccccCceeeee-CCEEEEEEEecHHHHH
Q psy8787 143 DVDVVTIRENTEGEYSGIEHEIV-DGVVQSIKLITEEASS 181 (364)
Q Consensus 143 ~iD~vIvREnteg~Y~g~~~~~~-~~~a~~~~~~t~~~~e 181 (364)
..+++|.|||++|.|.+++..+. +|.. ..++||++.|
T Consensus 195 ~~pI~i~Rha~gd~Y~~iD~vi~~~g~~--~~~~~rEnte 232 (483)
T PLN03065 195 KKPICIGRHAFGDQYRATDTVIKGPGKL--KMVFVPEDGN 232 (483)
T ss_pred CCCeEEeecccCCCcCceEEEEecCCee--EEEeecCCCC
Confidence 47899999999999999887642 3432 3467777665
No 111
>TIGR01416 Rieske_proteo ubiquinol-cytochrome c reductase, iron-sulfur subunit. Most members of this family have a recognizable twin-arginine translocation (tat) signal sequence (DeltaPh-dependent translocation in chloroplast) for transport across the membrane with the 2Fe-2S group already bound. These signal sequences include a motif resembling RRxFLK before the transmembrane helix.
Probab=25.95 E-value=39 Score=30.40 Aligned_cols=22 Identities=36% Similarity=0.637 Sum_probs=18.6
Q ss_pred ceeEeeccCCCCCccCCCCCCh
Q psy8787 286 GALFESVHGTAPDIAGKDLANP 307 (364)
Q Consensus 286 ~~~fEp~HGsapdiaGk~~aNP 307 (364)
+.++.|.|||.-|+.|+-+..|
T Consensus 132 ~~~~CPcHgs~Fd~~G~~~~gp 153 (174)
T TIGR01416 132 GGFFCPCHGSHYDTAGRVRKGP 153 (174)
T ss_pred CEEEeCCCCCEECCCCcEecCC
Confidence 4788999999999999876655
No 112
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=25.89 E-value=5e+02 Score=23.88 Aligned_cols=77 Identities=5% Similarity=0.010 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhhcCCCeeEeeEe-----H---HHHHHHHhcCCC
Q psy8787 177 EEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKY-----L---DTVCLNMVQDPT 248 (364)
Q Consensus 177 ~~~~eriar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp~i~~~~~~-----v---D~~~~~lv~~P~ 248 (364)
.++.+.++++-.+.. +|.+++.++.-..-. +...-.+-|++..+++|+++..... . -..+.++++...
T Consensus 114 ~~~g~~~~~~L~~~~--~g~~~i~~l~~~~~~--~~~~R~~gf~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 189 (280)
T cd06303 114 AAGARLLADYFIKRY--PNHARYAMLYFSPGY--ISTARGDTFIDCVHARNNWTLTSEFYTDATRQKAYQATSDILSNNP 189 (280)
T ss_pred HHHHHHHHHHHHHhc--CCCcEEEEEECCCCc--chhHHHHHHHHHHHhCCCceEEEeecCCCCHHHHHHHHHHHHHhCC
Confidence 344454444433211 456677766422111 1112224455555566555432211 1 124456665545
Q ss_pred CccEEEeCC
Q psy8787 249 QYDVLVMPN 257 (364)
Q Consensus 249 ~fdVivt~N 257 (364)
++|.|++.|
T Consensus 190 ~~~ai~~~n 198 (280)
T cd06303 190 DVDFIYACS 198 (280)
T ss_pred CCcEEEECC
Confidence 789999877
No 113
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=25.36 E-value=3.8e+02 Score=24.07 Aligned_cols=16 Identities=6% Similarity=0.173 Sum_probs=11.7
Q ss_pred HHHhcCCCCccEEEeCC
Q psy8787 241 LNMVQDPTQYDVLVMPN 257 (364)
Q Consensus 241 ~~lv~~P~~fdVivt~N 257 (364)
.+++..|. +|.|++.|
T Consensus 167 ~~~l~~~~-~~ai~~~~ 182 (264)
T cd01574 167 RELLREGD-PTAVFAAN 182 (264)
T ss_pred HHHHhCCC-CcEEEEcC
Confidence 45566665 89999987
No 114
>PF03971 IDH: Monomeric isocitrate dehydrogenase; InterPro: IPR004436 This family of enzymes catalyses the NADP(+)-dependent oxidative decarboxylation of isocitrate to form 2-oxoglutarate, CO2, and NADPH within the Krebs cycle (1.1.1.42 from EC). Thus this enzyme supplies the cell with a key intermediate in energy metabolism, and precursors for biosynthetic pathways. The activity of this enzyme, which is controlled by phosphorylation, helps regulate carbon flux between the Krebs cycle and the glyoxylate bypass, which is an alternate route that accumulates carbon for biosynthesis when acetate is the sole carbon source for growth []. The phosphorylation state of this enzyme is controlled by isocitrate dehydrogenase kinase/phosphatase. This family has been found in a number of bacterial species including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. The structure of isocitrate dehydrogenase from Azotobacter vinelandii (P16100 from SWISSPROT) has been determined []. This molecule consists of two distinct domains, a small domain and a large domain, with a folding topology similar to that of dimeric isocitrate dehydrogenase from Escherichia coli (P08200 from SWISSPROT). The structure of the large domain repeats a motif observed in the dimeric enzyme. Such a fusional structure by domain duplication enables a single polypeptide chain to form a structure at the catalytic site that is homologous to the dimeric enzyme, the catalytic site of which is located at the interface of two identical subunits.; GO: 0004450 isocitrate dehydrogenase (NADP+) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process; PDB: 1ITW_D 1J1W_A 3MBC_A 2B0T_A.
Probab=25.33 E-value=1.1e+02 Score=32.88 Aligned_cols=46 Identities=28% Similarity=0.347 Sum_probs=34.3
Q ss_pred CCEEEEEEEecHHHHHHHHHHHHHHHHhCCCCceEEEE-eCcccccccH
Q psy8787 166 DGVVQSIKLITEEASSRVAEFAFEYAKTNNRSKVTAVH-KANIMRMSDG 213 (364)
Q Consensus 166 ~~~a~~~~~~t~~~~eriar~Af~~A~~~~~~~Vt~v~-KaNv~~~~~~ 213 (364)
.|.+.+-.+++.+.-..+.+...+.|++.| -+.++| ||..||.||.
T Consensus 214 ~gEviDat~Ms~~aL~~F~~~~i~~AK~~~--vLfSlHlKATMMKVSDP 260 (735)
T PF03971_consen 214 AGEVIDATFMSAKALRAFYEEQIEDAKEEG--VLFSLHLKATMMKVSDP 260 (735)
T ss_dssp TT-EEEEEEE-HHHHHHHHHHHHHHHHHHT---EEEE-B-TTTSTTHHH
T ss_pred CCcEeehhhccHHHHHHHHHHHHHHHHhcC--CeEEeeehhhhhhccCc
Confidence 456677778999999999999999998865 567777 9999999885
No 115
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=25.23 E-value=3.4e+02 Score=23.92 Aligned_cols=75 Identities=7% Similarity=-0.016 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhhcCCCeeEee----E-eHH---HHHHHHhcCCCCccEEE
Q psy8787 183 VAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEE----K-YLD---TVCLNMVQDPTQYDVLV 254 (364)
Q Consensus 183 iar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp~i~~~~----~-~vD---~~~~~lv~~P~~fdViv 254 (364)
..+.+.+++.+.+.++|.+++-.+-.. ....+.+.+++..+++++++... . -.+ ....++++.-.+.|+++
T Consensus 105 ~~~~~~~~l~~~g~~~i~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 183 (264)
T cd01537 105 AGYLAGEHLAEKGHRRIALLAGPLGSS-TARERVAGFKDALKEAGPIEIVLVQEGDWDAEKGYQAAEELLTAHPDPTAIF 183 (264)
T ss_pred HHHHHHHHHHHhcCCcEEEEECCCCCC-cHHHHHHHHHHHHHHcCCcChhhhccCCCCHHHHHHHHHHHHhcCCCCCEEE
Confidence 445566666666677888876443322 22334444444444333111111 1 122 23445555533688888
Q ss_pred eCCC
Q psy8787 255 MPNL 258 (364)
Q Consensus 255 t~Nl 258 (364)
+.|-
T Consensus 184 ~~~~ 187 (264)
T cd01537 184 AAND 187 (264)
T ss_pred EcCc
Confidence 8863
No 116
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=24.47 E-value=3.3e+02 Score=24.59 Aligned_cols=20 Identities=10% Similarity=0.290 Sum_probs=13.8
Q ss_pred HHHHHHhcCCCCccEEEeCC
Q psy8787 238 TVCLNMVQDPTQYDVLVMPN 257 (364)
Q Consensus 238 ~~~~~lv~~P~~fdVivt~N 257 (364)
....++.+....+|+|++.|
T Consensus 167 ~~~~~~l~~~~~~~ai~~~~ 186 (268)
T cd06273 167 AALRQLLEQPPRPTAVICGN 186 (268)
T ss_pred HHHHHHHcCCCCCCEEEEcC
Confidence 44456666555789999976
No 117
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=24.37 E-value=4.6e+02 Score=23.82 Aligned_cols=59 Identities=15% Similarity=0.287 Sum_probs=31.4
Q ss_pred CCCceEEEE-eCcccccccHHHHHHHHHHhhcCCCeeEeeE-e----HH---HHHHHHhcCCCCccEEEeCC
Q psy8787 195 NRSKVTAVH-KANIMRMSDGLFLRCCRDAAEKFPEVKFEEK-Y----LD---TVCLNMVQDPTQYDVLVMPN 257 (364)
Q Consensus 195 ~~~~Vt~v~-KaNv~~~~~~lf~~~~~~va~~yp~i~~~~~-~----vD---~~~~~lv~~P~~fdVivt~N 257 (364)
++++|.++. ..+ . ....+.+-|.+.-++|| +++... . .+ ..+.+++++...+|+|++.|
T Consensus 126 g~~~i~~~~g~~~-~--~~~~R~~gf~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~ 193 (274)
T cd06311 126 GNGNIVVLRGIPT-P--IDNERVDAFDAAIAKYP-IKILDRQYANWNRDDAFSVMQDLLTKFPKIDAVWAHD 193 (274)
T ss_pred CCCeEEEEECCCC-c--chhHHHHHHHHHHhhCC-cEEEeccCCCCcHHHHHHHHHHHHHhCCCcCEEEECC
Confidence 556777664 222 2 22345566666666777 543321 1 11 22345554433689999977
No 118
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=24.15 E-value=3e+02 Score=24.76 Aligned_cols=75 Identities=8% Similarity=-0.003 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhCCCCceEEEE-eCcccccccHHHHHHHHHHhhcCC-Cee---E--eeEeHH---HHHHHHhcCCCCcc
Q psy8787 182 RVAEFAFEYAKTNNRSKVTAVH-KANIMRMSDGLFLRCCRDAAEKFP-EVK---F--EEKYLD---TVCLNMVQDPTQYD 251 (364)
Q Consensus 182 riar~Af~~A~~~~~~~Vt~v~-KaNv~~~~~~lf~~~~~~va~~yp-~i~---~--~~~~vD---~~~~~lv~~P~~fd 251 (364)
..++.|.++..++|.++|.++. ..+.. ....+.+-|.+..+++. ++. . ...-.+ ....+++++...+|
T Consensus 102 ~~~~~a~~~l~~~g~~~i~~l~~~~~~~--~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 179 (269)
T cd06288 102 QGGYDATRHLLAAGHRRIAFINGEPWML--AAKDRLKGYRQALAEAGIPFDPDLVVHGDWSADDGYEAAAALLDLDDRPT 179 (269)
T ss_pred HHHHHHHHHHHHcCCceEEEEeCCccch--hHHHHHHHHHHHHHHcCCCCCHHHeEeCCCChHHHHHHHHHHHhCCCCCC
Confidence 3445566666666777888774 22211 12334444555544442 111 1 111111 33455665544799
Q ss_pred EEEeCCC
Q psy8787 252 VLVMPNL 258 (364)
Q Consensus 252 Vivt~Nl 258 (364)
.|++.|=
T Consensus 180 ai~~~~d 186 (269)
T cd06288 180 AIFCGND 186 (269)
T ss_pred EEEEeCc
Confidence 9988763
No 119
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=24.10 E-value=92 Score=25.26 Aligned_cols=38 Identities=16% Similarity=0.352 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhhcCC
Q psy8787 177 EEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFP 227 (364)
Q Consensus 177 ~~~~eriar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp 227 (364)
.+..|||.|.|.+ .|- .+ |..+|.-|..+|++++++|-
T Consensus 23 ~keaERigr~AlK----aGL--------~e-ieI~d~eL~~~FeeIa~RFr 60 (92)
T PF07820_consen 23 TKEAERIGRIALK----AGL--------GE-IEISDAELQAAFEEIAARFR 60 (92)
T ss_pred HHHHHHHHHHHHH----ccc--------cc-ccCCHHHHHHHHHHHHHHHh
Confidence 3568899887754 331 11 23578899999999998873
No 120
>COG0280 Pta Phosphotransacetylase [Energy production and conversion]
Probab=23.85 E-value=3.6e+02 Score=26.89 Aligned_cols=129 Identities=24% Similarity=0.279 Sum_probs=72.1
Q ss_pred cHHHHHHHHHHHHHHHHhCC-CCceEEEEeCcccc---cccHHHHHHHHHHhhcCC-CeeEe-eEeHHHHHHHH------
Q psy8787 176 TEEASSRVAEFAFEYAKTNN-RSKVTAVHKANIMR---MSDGLFLRCCRDAAEKFP-EVKFE-EKYLDTVCLNM------ 243 (364)
Q Consensus 176 t~~~~eriar~Af~~A~~~~-~~~Vt~v~KaNv~~---~~~~lf~~~~~~va~~yp-~i~~~-~~~vD~~~~~l------ 243 (364)
|-++.-.|+..|.+.|++-| ..||.+..=+|.-. .+-.--++..+-+.+..| +.+++ ++..|++.-.=
T Consensus 174 taeeladIa~~sa~~a~~fgi~PkVAlLS~St~gs~~~~~~~kv~ea~~i~~~~~~~dl~vDGelq~DaA~~~~va~~k~ 253 (327)
T COG0280 174 TAEELADIAENAAETARRFGIEPKVALLSYSTFGSGKGPSTDKVREATKILRERAPPDLEVDGELQFDAALVEKVAAKKA 253 (327)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCceEEEEeecCCCCCCccHHHHHHHHHHHHhcCCccceeccCcchhhhcCHHHHHhhC
Confidence 44556667778888888765 23565544333321 111233443333344567 66665 44567665422
Q ss_pred hcCC--CCccEEEeCCCc-chhhhhhhhhccCCCCcccccccCCCceeEeeccCCCCCccCCCCCChhH
Q psy8787 244 VQDP--TQYDVLVMPNLY-GDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGTAPDIAGKDLANPTA 309 (364)
Q Consensus 244 v~~P--~~fdVivt~Nl~-GDIlSD~aa~l~G~lGl~psa~ig~~~~~fEp~HGsapdiaGk~~aNP~a 309 (364)
-..| +.=||+|.|||- |+|.--++--+.|..-+.|-. . ++--|+|=..+.--=.+|.|-++
T Consensus 254 p~s~vaG~ANvlVfP~LeagNI~yK~lq~~~~a~avGPil-~----G~~kPV~~lSrg~sv~dIvn~~a 317 (327)
T COG0280 254 PDSPLAGSANVLVFPDLEAGNIGYKLLQRLGGALAVGPIL-Q----GLAKPVNDLSRGASVEDIVNMAA 317 (327)
T ss_pred CCCCcCCCCCEEEcCCchHHHHHHHHHHHhcCCceechhh-h----cCccchhhcCCCCCHHHHHHHHH
Confidence 2233 456799999998 999999988877764443321 1 33357764433222244555433
No 121
>COG1995 PdxA Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=23.50 E-value=58 Score=32.38 Aligned_cols=21 Identities=19% Similarity=0.075 Sum_probs=16.1
Q ss_pred CCCCccccCCC--CcCHHHHHHHH
Q psy8787 42 SQWSWRGLKVQ--GLGEFNLYANV 63 (364)
Q Consensus 42 ~~~~i~~i~GD--GIGp~EV~a~~ 63 (364)
..+++.+-.|| |||| ||..-+
T Consensus 2 ~~~~iAit~GDPaGIGP-Ei~~~~ 24 (332)
T COG1995 2 TKPRIAITMGDPAGIGP-ELVALA 24 (332)
T ss_pred CCCceEecCCCcccCCH-HHHHHH
Confidence 45678888898 9999 994433
No 122
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=23.39 E-value=44 Score=33.31 Aligned_cols=21 Identities=10% Similarity=0.004 Sum_probs=17.3
Q ss_pred CCCCccccCCC--CcCHHHHHHHH
Q psy8787 42 SQWSWRGLKVQ--GLGEFNLYANV 63 (364)
Q Consensus 42 ~~~~i~~i~GD--GIGp~EV~a~~ 63 (364)
++|.+.+-.|| |||| ||+..+
T Consensus 2 ~~p~iaIT~GDpaGIGp-Eii~ka 24 (332)
T PRK03743 2 KKPIIAIPIGDPAGIGP-EIVVKT 24 (332)
T ss_pred CCCeEEEeCCCCcchHH-HHHHHH
Confidence 45778888898 9999 998766
No 123
>TIGR00178 monomer_idh isocitrate dehydrogenase, NADP-dependent, monomeric type. The monomeric type of isocitrate dehydrogenase has been found so far in a small number of species, including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. It is NADP-specific.
Probab=23.21 E-value=1e+02 Score=33.28 Aligned_cols=59 Identities=25% Similarity=0.372 Sum_probs=44.0
Q ss_pred CCEEEEEEEecHHHHHHHHHHHHHHHHhCCCCceEEEE-eCcccccccH---------HHHHHHHHHhhcC
Q psy8787 166 DGVVQSIKLITEEASSRVAEFAFEYAKTNNRSKVTAVH-KANIMRMSDG---------LFLRCCRDAAEKF 226 (364)
Q Consensus 166 ~~~a~~~~~~t~~~~eriar~Af~~A~~~~~~~Vt~v~-KaNv~~~~~~---------lf~~~~~~va~~y 226 (364)
.|.+.+-.+++.+.-..+.....+.|++.| -+.++| ||..||.||. +|.++|++-++.+
T Consensus 218 ~gEviDat~ms~~aL~~F~~~~i~~Ak~~g--vLfSlHlKATMMKVSDPIiFGhaV~vffkdvF~k~~~~~ 286 (741)
T TIGR00178 218 DGEIIDSSVMSKKALRNFIEEEIEDAKEEG--VLLSLHLKATMMKVSDPIMFGHAVREFYKDAFAKHAEVL 286 (741)
T ss_pred CCCEeehhhhCHHHHHHHHHHHHHHHHHcC--cEEEeeehheeecccCceehhHHHHHHHHHHHHHHHHHH
Confidence 345566677888888888888888898764 466777 9999998875 5667776666544
No 124
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=23.13 E-value=1.9e+02 Score=28.25 Aligned_cols=62 Identities=15% Similarity=0.214 Sum_probs=32.0
Q ss_pred HHHH-HHhCCCCceEEEEeCcccccccHHHHHHHHHHhh--cCCCeeEeeEeHHHHH-HHHhcCCCCccEEEe
Q psy8787 187 AFEY-AKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAE--KFPEVKFEEKYLDTVC-LNMVQDPTQYDVLVM 255 (364)
Q Consensus 187 Af~~-A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~--~yp~i~~~~~~vD~~~-~~lv~~P~~fdVivt 255 (364)
+|-. |...|.++|+.||.+ .-..+++++=++ .+..-.++..--|..- +.-+++..+||+||+
T Consensus 136 gfsv~Aa~gGA~~v~~VD~S-------~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 136 GFSVAAAAGGAKEVVSVDSS-------KRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp HHHHHHHHTTESEEEEEES--------HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHHCCCCEEEEEeCC-------HHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 4555 355677789999954 345566665332 3332233334444432 222456779998874
No 125
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=22.95 E-value=3e+02 Score=24.87 Aligned_cols=20 Identities=0% Similarity=0.139 Sum_probs=14.6
Q ss_pred HHHHHhcCCCCccEEEeCCC
Q psy8787 239 VCLNMVQDPTQYDVLVMPNL 258 (364)
Q Consensus 239 ~~~~lv~~P~~fdVivt~Nl 258 (364)
++.++++++..+|+|++.|-
T Consensus 162 ~~~~~l~~~~~~~ai~~~~d 181 (261)
T cd06272 162 AAKKLLKESDLPTAIICGSY 181 (261)
T ss_pred HHHHHHcCCCCCCEEEECCc
Confidence 44566666667999999885
No 126
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=22.89 E-value=3e+02 Score=22.32 Aligned_cols=56 Identities=13% Similarity=0.028 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHhCCCCceEEE-EeCcccccccHHHHHHHHHHhhcCCCeeEeeEeHHH
Q psy8787 180 SSRVAEFAFEYAKTNNRSKVTAV-HKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLDT 238 (364)
Q Consensus 180 ~eriar~Af~~A~~~~~~~Vt~v-~KaNv~~~~~~lf~~~~~~va~~yp~i~~~~~~vD~ 238 (364)
..+-.|-.|.-+++++ +.|.+. ++. ... .+...+.++++++++|+.+++....+|.
T Consensus 7 ~~~~~~~~~~~~l~~~-~~vvv~f~a~-wC~-~C~~~~~~l~~la~~~~~i~~~~vd~d~ 63 (113)
T cd02975 7 DRKALKEEFFKEMKNP-VDLVVFSSKE-GCQ-YCEVTKQLLEELSELSDKLKLEIYDFDE 63 (113)
T ss_pred HHHHHHHHHHHHhCCC-eEEEEEeCCC-CCC-ChHHHHHHHHHHHHhcCceEEEEEeCCc
Confidence 3444555555556653 334433 333 333 3577888999999888888888877774
No 127
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=22.87 E-value=5.7e+02 Score=23.08 Aligned_cols=76 Identities=12% Similarity=0.166 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHhCCCCceEEEE-eCcccccccHHHHHHHHHHhhcCCCeeEee-Ee----HHH---HHHHHhcCCC
Q psy8787 178 EASSRVAEFAFEYAKTNNRSKVTAVH-KANIMRMSDGLFLRCCRDAAEKFPEVKFEE-KY----LDT---VCLNMVQDPT 248 (364)
Q Consensus 178 ~~~eriar~Af~~A~~~~~~~Vt~v~-KaNv~~~~~~lf~~~~~~va~~yp~i~~~~-~~----vD~---~~~~lv~~P~ 248 (364)
++....+++..+... |+++|.++. ..+.. +...+.+-|++..++++++++.. .. .+. .+..+++...
T Consensus 107 ~~~~~~~~~l~~~~~--g~~~i~~i~~~~~~~--~~~~r~~gf~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 182 (273)
T cd06310 107 AAGKLAAEALAELLG--KKGKVAVISFVPGSS--TTDQREEGFLEGLKEYPGIEIVATQYSDSDYAKALDITEDLLTANP 182 (273)
T ss_pred HHHHHHHHHHHHHcC--CCceEEEEeCCCCCc--cHHHHHHHHHHHHHhCCCcEEEecccCCcCHHHHHHHHHHHHHhCC
Confidence 344444544444321 556787774 22221 22334455555555554443321 11 111 2334554333
Q ss_pred CccEEEeCC
Q psy8787 249 QYDVLVMPN 257 (364)
Q Consensus 249 ~fdVivt~N 257 (364)
.+|.|++.|
T Consensus 183 ~~~~i~~~~ 191 (273)
T cd06310 183 DLKGIFGAN 191 (273)
T ss_pred CceEEEecC
Confidence 689999886
No 128
>PRK11890 phosphate acetyltransferase; Provisional
Probab=22.57 E-value=4.9e+02 Score=25.74 Aligned_cols=98 Identities=19% Similarity=0.265 Sum_probs=56.3
Q ss_pred cHHHHHHHHHHHHHHHHhCCC--CceEEEEeCcccccccHHHHH---HHHHHh-hcCCCeeEee-EeHHHHHHH------
Q psy8787 176 TEEASSRVAEFAFEYAKTNNR--SKVTAVHKANIMRMSDGLFLR---CCRDAA-EKFPEVKFEE-KYLDTVCLN------ 242 (364)
Q Consensus 176 t~~~~eriar~Af~~A~~~~~--~~Vt~v~KaNv~~~~~~lf~~---~~~~va-~~yp~i~~~~-~~vD~~~~~------ 242 (364)
|-+.-..|+..|.+.|++-|- .||.++.=.+.......--.+ ..+.-. .++|+..++- +.+|++.-.
T Consensus 154 ~~eq~a~I~~~a~~~a~~lG~~~PkVA~LS~se~~~~~~~~t~~aa~L~k~~~~~~~~~~~vdGplq~D~A~~~~~a~~K 233 (312)
T PRK11890 154 TLEDKADIVQNAIDLAHALGFDEPRVAILSAVETVNPKIPSTLDAAALCKMADRGQITGAILDGPLAFDNAISPEAARIK 233 (312)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCeEEEEeeecCCCCCCchHHHHHHHHHHHhcCcCCCcEEEcCccHHHhCCHHHHHhh
Confidence 445566678889999987653 466655322221111111122 222111 2478866653 446776532
Q ss_pred HhcCC--CCccEEEeCCCc-chhhhhhhhhccCC
Q psy8787 243 MVQDP--TQYDVLVMPNLY-GDILSDMCAGLVGG 273 (364)
Q Consensus 243 lv~~P--~~fdVivt~Nl~-GDIlSD~aa~l~G~ 273 (364)
-..+| +.-||+|.||+. |||+--+.-.+.|+
T Consensus 234 ~~~s~vaG~AnvLIfPnl~agNi~yK~l~~~~~~ 267 (312)
T PRK11890 234 GIVSPVAGDADILVVPDLEAGNMLAKQLTFLAGA 267 (312)
T ss_pred CCCCCCCCcCCEEEeCCcHHHHHHHHHHHHhcCC
Confidence 11222 567899999997 99988887766554
No 129
>KOG0189|consensus
Probab=21.69 E-value=1.9e+02 Score=27.20 Aligned_cols=58 Identities=10% Similarity=0.226 Sum_probs=41.9
Q ss_pred HHHHhCCC-CceEEEEeCcccccccHHHHHHHHHHhhcCCCeeEeeEeHHHHHH-HHhcCCCCc
Q psy8787 189 EYAKTNNR-SKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLDTVCL-NMVQDPTQY 250 (364)
Q Consensus 189 ~~A~~~~~-~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp~i~~~~~~vD~~~~-~lv~~P~~f 250 (364)
+||.+.++ -+|.+++-....+.|-.|| .+|.+.|+.|.++.+.-|++.- .++.+-..|
T Consensus 63 d~~~~~~~~~~l~~idT~~~~PeT~~l~----d~VekkY~~i~I~~~~pd~~e~ea~~~~K~~~ 122 (261)
T KOG0189|consen 63 DMLSKTGRPFRLFFIDTLHHFPETLRLF----DAVEKKYGNIRIHVYFPDAVEVEALFASKGGF 122 (261)
T ss_pred HHHHHcCCCceeEEeeccccChHHHHHH----HHHHHhcCceEEEEEcchhHHHHHHHHhccch
Confidence 56666553 4688888777776665554 5677899999999999999874 456665555
No 130
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=21.54 E-value=95 Score=23.61 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=19.6
Q ss_pred ecHHHHHHHHHHHHHHHHhCCCCce
Q psy8787 175 ITEEASSRVAEFAFEYAKTNNRSKV 199 (364)
Q Consensus 175 ~t~~~~eriar~Af~~A~~~~~~~V 199 (364)
+...-++.+++.|+++|+.||++.|
T Consensus 31 ~~e~fv~~v~~~a~~lAkHr~~~tv 55 (72)
T cd07981 31 IADDFVDDVVEDACRLAKHRKSDTL 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 4555688999999999999876543
No 131
>PRK10742 putative methyltransferase; Provisional
Probab=21.10 E-value=3.2e+02 Score=26.18 Aligned_cols=69 Identities=10% Similarity=0.110 Sum_probs=41.1
Q ss_pred HHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhhcCCCee------EeeEeHHHHHHHHhcCCCCccEEEeCCC
Q psy8787 185 EFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVK------FEEKYLDTVCLNMVQDPTQYDVLVMPNL 258 (364)
Q Consensus 185 r~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp~i~------~~~~~vD~~~~~lv~~P~~fdVivt~Nl 258 (364)
+-||++|.. |. +||++++.-++. .+-++-.+...++ +++. ++-..-| +...|-+.+..||||-..=|
T Consensus 101 ~Da~~las~-G~-~V~~vEr~p~va---alL~dgL~ra~~~-~~~~~~~~~ri~l~~~d-a~~~L~~~~~~fDVVYlDPM 173 (250)
T PRK10742 101 RDAFVLASV-GC-RVRMLERNPVVA---ALLDDGLARGYAD-AEIGGWLQERLQLIHAS-SLTALTDITPRPQVVYLDPM 173 (250)
T ss_pred HHHHHHHHc-CC-EEEEEECCHHHH---HHHHHHHHHhhhc-cccchhhhceEEEEeCc-HHHHHhhCCCCCcEEEECCC
Confidence 558998866 64 499999987763 3555555543322 2221 2222233 33445456678999988777
Q ss_pred cc
Q psy8787 259 YG 260 (364)
Q Consensus 259 ~G 260 (364)
|-
T Consensus 174 fp 175 (250)
T PRK10742 174 FP 175 (250)
T ss_pred CC
Confidence 73
No 132
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=21.06 E-value=2.8e+02 Score=25.12 Aligned_cols=75 Identities=11% Similarity=0.064 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhhcC--C-Ce---eEeeEeHHHHHHHHhcCCCCccEEEe
Q psy8787 182 RVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKF--P-EV---KFEEKYLDTVCLNMVQDPTQYDVLVM 255 (364)
Q Consensus 182 riar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~y--p-~i---~~~~~~vD~~~~~lv~~P~~fdVivt 255 (364)
+..+.|.++-.++|.+++.++.... .. ......+-+++..+++ + .+ ..+..-.-..+.++++++...+.|++
T Consensus 101 ~~g~~a~~~L~~~g~~~i~~~~~~~-~~-~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~ 178 (263)
T cd06280 101 AAARTLVEHLVAQGYRRIGGLFGNA-ST-TGAERRAGYEDAMRRHGLAPDARFVAPTAEAAEAALAAWLAAPERPEALVA 178 (263)
T ss_pred HHHHHHHHHHHHCCCceEEEEeCCC-CC-CHHHHHHHHHHHHHHcCCCCChhhcccCHHHHHHHHHHHhcCCCCCcEEEE
Confidence 3555666666667777787664322 11 1122233333333221 1 11 11111112355677766667899999
Q ss_pred CCC
Q psy8787 256 PNL 258 (364)
Q Consensus 256 ~Nl 258 (364)
.|=
T Consensus 179 ~~d 181 (263)
T cd06280 179 SNG 181 (263)
T ss_pred CCc
Confidence 664
No 133
>PRK02746 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=20.81 E-value=58 Score=32.66 Aligned_cols=22 Identities=9% Similarity=-0.020 Sum_probs=18.0
Q ss_pred CCCCCccccCCC--CcCHHHHHHHH
Q psy8787 41 ISQWSWRGLKVQ--GLGEFNLYANV 63 (364)
Q Consensus 41 ~~~~~i~~i~GD--GIGp~EV~a~~ 63 (364)
..+|.|.+-.|| |||| ||+..+
T Consensus 7 ~~~p~IaIT~GDpaGIGP-Eii~ka 30 (345)
T PRK02746 7 DPRPRLAITLGDPAGIGP-EVILKA 30 (345)
T ss_pred CCCCcEEEeCCCCcchHH-HHHHHH
Confidence 345788888998 9999 998766
No 134
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=20.75 E-value=1.2e+02 Score=23.84 Aligned_cols=26 Identities=38% Similarity=0.590 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCCceEEEE
Q psy8787 177 EEASSRVAEFAFEYAKTNNRSKVTAVH 203 (364)
Q Consensus 177 ~~~~eriar~Af~~A~~~~~~~Vt~v~ 203 (364)
.+.+.+.+++|+++|...+ .+|+++|
T Consensus 12 ~~~~~~al~~a~~la~~~~-~~i~~l~ 37 (140)
T PF00582_consen 12 SEESRRALRFALELAKRSG-AEITLLH 37 (140)
T ss_dssp SHHHHHHHHHHHHHHHHHT-CEEEEEE
T ss_pred CHHHHHHHHHHHHHHHhhC-CeEEEEE
Confidence 4568899999999999865 5777765
No 135
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=20.68 E-value=5.5e+02 Score=22.91 Aligned_cols=71 Identities=10% Similarity=0.066 Sum_probs=33.2
Q ss_pred HHHHHHHHhCCCCceEEEEe-CcccccccHHHHHHHHHHhhcCC----C--eeEeeEeHHH---HHHHHhcCCCCccEEE
Q psy8787 185 EFAFEYAKTNNRSKVTAVHK-ANIMRMSDGLFLRCCRDAAEKFP----E--VKFEEKYLDT---VCLNMVQDPTQYDVLV 254 (364)
Q Consensus 185 r~Af~~A~~~~~~~Vt~v~K-aNv~~~~~~lf~~~~~~va~~yp----~--i~~~~~~vD~---~~~~lv~~P~~fdViv 254 (364)
+.|.++..++|.++|.+++= .+.. ....+.+-|.+..++++ . +.......+. ...++++....+|.|+
T Consensus 104 ~~~~~~l~~~g~~~i~~l~~~~~~~--~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~ 181 (267)
T cd06284 104 RLAVDHLISLGHRRIALITGPRDNP--LARDRLEGYRQALAEAGLPADEELIQEGDFSLESGYAAARRLLALPDRPTAIF 181 (267)
T ss_pred HHHHHHHHHcCCceEEEEcCCccch--hHHHHHHHHHHHHHHcCCCCCcceEEeCCCChHHHHHHHHHHHhCCCCCcEEE
Confidence 44444455557678887742 1111 12334455555444432 1 1111111222 2234554445689888
Q ss_pred eCC
Q psy8787 255 MPN 257 (364)
Q Consensus 255 t~N 257 (364)
+.|
T Consensus 182 ~~~ 184 (267)
T cd06284 182 CFS 184 (267)
T ss_pred EcC
Confidence 875
No 136
>PRK08190 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated
Probab=20.51 E-value=5.2e+02 Score=26.82 Aligned_cols=125 Identities=18% Similarity=0.142 Sum_probs=68.5
Q ss_pred cHHHHHHHHHHHHHHHHhCCC--CceEEEEeCcccccccHHHHHHHH--HHh--hcCCCeeEeeE-eHHHHHHH-Hh---
Q psy8787 176 TEEASSRVAEFAFEYAKTNNR--SKVTAVHKANIMRMSDGLFLRCCR--DAA--EKFPEVKFEEK-YLDTVCLN-MV--- 244 (364)
Q Consensus 176 t~~~~eriar~Af~~A~~~~~--~~Vt~v~KaNv~~~~~~lf~~~~~--~va--~~yp~i~~~~~-~vD~~~~~-lv--- 244 (364)
|-+.-..|+..|.++|+.-|- .||-+..=.+--......-++..+ +.+ .++|+..++-- -.|++.-. +.
T Consensus 308 ~~e~l~~ia~~a~~~ar~lGie~PkVAlLs~s~~~~~~~~~~~eA~~L~~~~~~~~~~~~~vdG~l~~D~A~~~~~a~~k 387 (466)
T PRK08190 308 TLEDKRDIVQNAIDLAHALGVEEPKVAILSAVETVNPKMPSTLDAAALCKMADRGQITGGIVDGPLAFDNAISAEAARTK 387 (466)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCeEEEEeceecCCCCChhHHHHHHHHHHHhcCCCCCcEEecCchHhhhcCHHHHHhh
Confidence 445566778888899986553 567655322111112223333221 122 23788777643 46666521 21
Q ss_pred --cCC--CCccEEEeCCCc-chhhhhhhhhccCCCCcccccccCCCceeEeeccCCCCCccCCCCCC
Q psy8787 245 --QDP--TQYDVLVMPNLY-GDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGTAPDIAGKDLAN 306 (364)
Q Consensus 245 --~~P--~~fdVivt~Nl~-GDIlSD~aa~l~G~lGl~psa~ig~~~~~fEp~HGsapdiaGk~~aN 306 (364)
.+| +.-||+|.||+. |||+--+...+.|+-... .-+|... |+|=+...--.++|.|
T Consensus 388 ~~~s~v~G~Anvli~P~l~agNi~~K~~~~~~~~~~~G--~i~G~~~----Pv~~~sR~~s~~~~~~ 448 (466)
T PRK08190 388 GIVSPVAGQADILVVPDLEAGNMLAKQLTYLAGADAAG--IVLGARV----PIILTSRADSLRARLA 448 (466)
T ss_pred CCCCCCCCcCCEEEcCChHHhHHHHHHHHHhcCCcEEe--EEecccC----ceEeCCCCCCHHHHHH
Confidence 222 567999999997 999988877776653322 3445443 5553333333355666
Done!