Query psy8787
Match_columns 364
No_of_seqs 188 out of 1569
Neff 6.6
Searched_HMMs 29240
Date Fri Aug 16 19:15:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8787.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8787hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x0l_A Homoisocitrate dehydrog 100.0 2E-110 7E-115 814.0 26.8 315 44-364 2-329 (333)
2 3blx_B Isocitrate dehydrogenas 100.0 4E-109 1E-113 810.3 27.7 319 42-364 20-353 (354)
3 3flk_A Tartrate dehydrogenase/ 100.0 3E-109 1E-113 813.9 26.6 319 42-364 4-359 (364)
4 3ty4_A Probable homoisocitrate 100.0 7E-109 2E-113 810.4 26.2 319 41-364 8-363 (366)
5 3blx_A Isocitrate dehydrogenas 100.0 1E-108 4E-113 805.6 25.8 316 42-364 16-345 (349)
6 3r8w_A 3-isopropylmalate dehyd 100.0 5E-109 2E-113 819.0 22.4 351 5-364 7-396 (405)
7 3udu_A 3-isopropylmalate dehyd 100.0 2E-108 6E-113 806.4 25.1 317 41-364 4-354 (361)
8 1wpw_A 3-isopropylmalate dehyd 100.0 8E-108 3E-112 796.4 29.1 316 43-364 1-334 (336)
9 3u1h_A 3-isopropylmalate dehyd 100.0 8E-108 3E-112 806.5 25.9 317 42-364 22-375 (390)
10 2d1c_A Isocitrate dehydrogenas 100.0 5E-107 2E-111 818.2 30.6 333 15-364 5-354 (496)
11 2y3z_A 3-isopropylmalate dehyd 100.0 1E-107 4E-112 800.6 23.8 315 43-364 3-346 (359)
12 3dms_A Isocitrate dehydrogenas 100.0 2E-107 5E-112 816.5 23.6 338 17-364 18-425 (427)
13 3vmk_A 3-isopropylmalate dehyd 100.0 5E-107 2E-111 799.7 26.1 317 42-364 12-370 (375)
14 1vlc_A 3-isopropylmalate dehyd 100.0 3E-107 1E-111 798.8 23.0 315 43-364 12-361 (366)
15 2e0c_A 409AA long hypothetical 100.0 1E-106 4E-111 807.2 25.9 335 17-364 7-405 (409)
16 2iv0_A Isocitrate dehydrogenas 100.0 1E-106 4E-111 807.1 25.8 340 9-364 5-408 (412)
17 2d4v_A Isocitrate dehydrogenas 100.0 3E-106 1E-110 806.7 27.4 337 17-364 9-428 (429)
18 1cnz_A IPMDH, IMDH, protein (3 100.0 2E-106 6E-111 794.7 24.8 317 42-364 3-358 (363)
19 1w0d_A 3-isopropylmalate dehyd 100.0 9E-106 3E-110 783.0 27.3 310 44-364 2-336 (337)
20 1a05_A IPMDH, IMDH, 3-isopropy 100.0 2E-105 5E-110 787.6 25.9 315 44-364 2-353 (358)
21 1tyo_A Isocitrate dehydrogenas 100.0 2E-105 8E-110 801.5 25.9 338 10-364 14-420 (435)
22 1hqs_A Isocitrate dehydrogenas 100.0 3E-105 9E-110 799.6 24.5 335 17-364 2-421 (423)
23 3us8_A Isocitrate dehydrogenas 100.0 2.2E-98 7E-103 750.5 20.5 316 41-364 28-420 (427)
24 2uxq_A Isocitrate dehydrogenas 100.0 1.3E-97 5E-102 742.2 21.3 316 42-364 5-396 (402)
25 1lwd_A Isocitrate dehydrogenas 100.0 1.9E-95 6E-100 728.9 20.8 315 43-364 8-405 (413)
26 1zor_A Isocitrate dehydrogenas 100.0 5.8E-95 2E-99 723.0 21.7 315 43-364 7-394 (399)
27 4aoy_A Isocitrate dehydrogenas 100.0 3.7E-94 1.3E-98 715.1 21.1 316 42-364 6-397 (402)
28 2qfy_A Isocitrate dehydrogenas 100.0 2E-93 7E-98 716.3 15.5 315 43-364 22-418 (427)
29 3lxy_A 4-hydroxythreonine-4-ph 97.2 0.0017 5.7E-08 63.0 10.5 136 174-319 179-327 (334)
30 2b0t_A NADP isocitrate dehydro 96.9 0.018 6.1E-07 58.8 14.7 183 161-349 443-648 (738)
31 1itw_A Isocitrate dehydrogenas 96.9 0.018 6E-07 58.8 14.6 183 161-349 447-652 (741)
32 2hi1_A 4-hydroxythreonine-4-ph 95.9 0.0084 2.9E-07 57.9 5.5 135 174-319 181-328 (330)
33 3u1h_A 3-isopropylmalate dehyd 95.8 0.00011 3.6E-09 72.7 -8.3 79 19-98 73-168 (390)
34 3udu_A 3-isopropylmalate dehyd 95.4 8.9E-05 3E-09 72.6 -10.5 107 19-126 56-181 (361)
35 3vmk_A 3-isopropylmalate dehyd 95.0 0.00024 8.3E-09 69.9 -8.8 79 19-98 63-160 (375)
36 4aty_A Terephthalate 1,2-CIS-d 94.9 0.015 5E-07 56.7 3.6 132 174-319 196-340 (349)
37 1yxo_A 4-hydroxythreonine-4-ph 94.8 0.014 4.9E-07 56.3 3.0 135 174-319 174-322 (328)
38 3tsn_A 4-hydroxythreonine-4-ph 93.9 0.033 1.1E-06 54.4 3.5 78 234-319 282-362 (367)
39 1cnz_A IPMDH, IMDH, protein (3 92.9 0.0026 8.9E-08 62.3 -6.1 79 18-97 53-150 (363)
40 2y3z_A 3-isopropylmalate dehyd 92.9 0.003 1E-07 61.8 -5.7 79 18-97 52-147 (359)
41 1vlc_A 3-isopropylmalate dehyd 92.6 0.0023 7.8E-08 62.7 -6.9 79 18-97 61-158 (366)
42 3flk_A Tartrate dehydrogenase/ 92.6 0.0019 6.4E-08 63.4 -7.6 77 18-97 55-146 (364)
43 1a05_A IPMDH, IMDH, 3-isopropy 92.6 0.0033 1.1E-07 61.5 -5.9 79 18-97 50-145 (358)
44 3r8w_A 3-isopropylmalate dehyd 92.1 0.0032 1.1E-07 62.5 -6.7 78 19-97 92-186 (405)
45 1wpw_A 3-isopropylmalate dehyd 90.5 0.009 3.1E-07 57.9 -5.2 75 18-97 50-128 (336)
46 1w0d_A 3-isopropylmalate dehyd 88.9 0.0093 3.2E-07 57.9 -6.5 77 18-98 46-135 (337)
47 1vi1_A Fatty acid/phospholipid 88.4 1.6 5.6E-05 42.0 9.0 146 175-334 148-328 (345)
48 3blx_B Isocitrate dehydrogenas 88.4 0.014 4.9E-07 56.9 -5.6 76 18-97 65-147 (354)
49 1x0l_A Homoisocitrate dehydrog 87.9 0.016 5.6E-07 56.0 -5.5 100 18-127 46-159 (333)
50 3blx_A Isocitrate dehydrogenas 86.8 0.007 2.4E-07 59.0 -8.8 111 9-127 49-172 (349)
51 1u7n_A Fatty acid/phospholipid 86.3 2.9 9.9E-05 40.1 9.4 132 176-320 151-318 (336)
52 3dms_A Isocitrate dehydrogenas 86.0 0.02 6.8E-07 57.2 -6.2 66 26-96 98-174 (427)
53 3ty4_A Probable homoisocitrate 85.6 0.029 9.8E-07 55.0 -5.2 76 18-97 59-142 (366)
54 2iv0_A Isocitrate dehydrogenas 85.3 0.043 1.5E-06 54.6 -4.2 74 18-96 76-160 (412)
55 1hqs_A Isocitrate dehydrogenas 84.5 0.047 1.6E-06 54.5 -4.4 74 19-96 72-155 (423)
56 2d4v_A Isocitrate dehydrogenas 84.4 0.041 1.4E-06 54.9 -4.8 70 22-96 84-164 (429)
57 1tyo_A Isocitrate dehydrogenas 84.2 0.049 1.7E-06 54.5 -4.4 73 18-96 87-170 (435)
58 2d1c_A Isocitrate dehydrogenas 83.4 0.056 1.9E-06 54.8 -4.4 73 20-97 67-149 (496)
59 2e0c_A 409AA long hypothetical 81.4 0.055 1.9E-06 53.7 -5.2 74 18-96 76-160 (409)
60 2af4_C Phosphate acetyltransfe 80.0 6.3 0.00022 37.6 8.9 97 175-271 178-289 (333)
61 1td9_A Phosphate acetyltransfe 78.4 7.4 0.00025 37.0 8.8 98 175-272 179-290 (329)
62 1vmi_A Putative phosphate acet 75.1 8.7 0.0003 37.0 8.3 98 175-272 185-297 (355)
63 1r5j_A Putative phosphotransac 71.7 16 0.00054 34.7 9.2 99 175-273 183-295 (337)
64 1yco_A Branched-chain phosphot 70.4 22 0.00075 33.0 9.6 95 176-273 126-237 (279)
65 3us8_A Isocitrate dehydrogenas 69.1 0.2 6.9E-06 50.0 -5.0 77 18-97 75-167 (427)
66 4aoy_A Isocitrate dehydrogenas 67.9 0.15 5.1E-06 50.5 -6.2 79 18-97 52-144 (402)
67 3l49_A ABC sugar (ribose) tran 65.6 11 0.00039 33.4 6.5 72 185-257 112-199 (291)
68 2uxq_A Isocitrate dehydrogenas 63.2 0.22 7.6E-06 49.3 -6.0 78 18-96 51-142 (402)
69 3ksm_A ABC-type sugar transpor 56.9 18 0.00061 31.7 6.1 80 177-257 108-195 (276)
70 4hc4_A Protein arginine N-meth 51.3 11 0.00039 36.5 4.0 59 191-263 101-162 (376)
71 2rjo_A Twin-arginine transloca 50.8 50 0.0017 30.0 8.2 73 184-257 122-205 (332)
72 4azs_A Methyltransferase WBDD; 50.2 38 0.0013 34.3 7.9 64 187-259 81-144 (569)
73 3uf6_A LMO1369 protein; struct 49.5 53 0.0018 30.6 8.2 96 176-272 144-252 (291)
74 2zqe_A MUTS2 protein; alpha/be 48.7 46 0.0016 24.9 6.3 51 174-230 11-62 (83)
75 3o74_A Fructose transport syst 48.1 54 0.0018 28.4 7.8 73 183-257 107-188 (272)
76 3dlo_A Universal stress protei 47.9 25 0.00085 28.7 5.1 26 178-204 36-61 (155)
77 3cis_A Uncharacterized protein 47.7 71 0.0024 28.8 8.8 143 95-257 112-275 (309)
78 2fn9_A Ribose ABC transporter, 47.4 60 0.002 28.6 8.0 80 176-257 107-199 (290)
79 3l6u_A ABC-type sugar transpor 46.9 39 0.0013 29.8 6.7 81 176-257 112-203 (293)
80 1lwd_A Isocitrate dehydrogenas 46.2 0.42 1.5E-05 47.4 -7.2 77 18-95 53-143 (413)
81 1zor_A Isocitrate dehydrogenas 42.0 0.49 1.7E-05 46.7 -7.5 77 18-95 52-142 (399)
82 3miz_A Putative transcriptiona 41.9 82 0.0028 27.9 8.1 75 182-257 117-205 (301)
83 4e4r_A Phosphate acetyltransfe 41.6 42 0.0014 31.9 6.3 99 176-274 177-293 (331)
84 2x7x_A Sensor protein; transfe 39.9 80 0.0027 28.5 7.8 63 195-258 127-197 (325)
85 3d8u_A PURR transcriptional re 38.4 1.2E+02 0.0043 26.1 8.6 74 183-257 107-189 (275)
86 3jy6_A Transcriptional regulat 37.8 51 0.0017 28.9 5.9 75 182-257 109-189 (276)
87 2fhp_A Methylase, putative; al 35.7 1.3E+02 0.0044 24.3 7.8 59 195-260 66-127 (187)
88 1gud_A ALBP, D-allose-binding 35.6 1.3E+02 0.0046 26.4 8.5 60 196-257 133-201 (288)
89 2ioy_A Periplasmic sugar-bindi 34.9 1.5E+02 0.0053 25.8 8.7 60 196-257 123-191 (283)
90 3fdx_A Putative filament prote 34.7 56 0.0019 25.4 5.1 25 180-205 16-40 (143)
91 1tjy_A Sugar transport protein 32.9 1.8E+02 0.006 26.1 8.9 63 194-257 126-197 (316)
92 2h3h_A Sugar ABC transporter, 32.0 1.8E+02 0.006 25.9 8.7 62 195-258 122-191 (313)
93 3cx5_E Cytochrome B-C1 complex 31.7 12 0.00042 32.6 0.6 24 284-307 142-165 (185)
94 3tb6_A Arabinose metabolism tr 31.2 92 0.0032 27.2 6.5 73 183-257 124-209 (298)
95 3egc_A Putative ribose operon 30.9 1.6E+02 0.0056 25.7 8.2 74 183-257 112-194 (291)
96 3i3v_A Probable secreted solut 30.6 1.2E+02 0.004 28.2 7.5 61 196-256 7-71 (405)
97 3quf_A Extracellular solute-bi 30.1 1.1E+02 0.0039 28.4 7.3 47 212-258 40-92 (414)
98 3brq_A HTH-type transcriptiona 30.1 1.2E+02 0.0041 26.4 7.1 73 184-257 127-208 (296)
99 3qd7_X Uncharacterized protein 30.0 1.4E+02 0.0047 24.6 6.8 61 170-230 50-111 (137)
100 3cs3_A Sugar-binding transcrip 29.8 2.2E+02 0.0074 24.6 8.8 72 184-257 106-185 (277)
101 3k01_A Acarbose/maltose bindin 29.8 62 0.0021 30.3 5.3 59 197-257 28-92 (412)
102 2rbg_A Putative uncharacterize 28.8 2.3E+02 0.0079 22.9 9.0 67 174-246 11-85 (126)
103 1vf5_D Rieske iron-sulfur prot 28.7 27 0.00094 30.0 2.4 51 252-307 89-143 (179)
104 3m9w_A D-xylose-binding peripl 28.0 2.7E+02 0.0091 24.6 9.2 73 184-257 110-196 (313)
105 3brs_A Periplasmic binding pro 27.8 1.4E+02 0.0046 26.1 7.0 73 184-257 117-198 (289)
106 3k4h_A Putative transcriptiona 27.6 2.5E+02 0.0087 24.2 8.9 74 183-257 118-200 (292)
107 3d02_A Putative LACI-type tran 26.7 1.2E+02 0.0043 26.5 6.6 73 183-257 112-197 (303)
108 3gbv_A Putative LACI-family tr 26.7 2.3E+02 0.0079 24.6 8.4 75 185-259 122-210 (304)
109 3c3k_A Alanine racemase; struc 26.6 1.7E+02 0.006 25.5 7.5 73 184-257 112-192 (285)
110 3cfx_A UPF0100 protein MA_0280 26.5 1.3E+02 0.0043 27.0 6.7 46 213-258 17-64 (296)
111 1pp9_E Ubiquinol-cytochrome C 26.5 18 0.00062 31.8 0.8 25 283-307 151-175 (196)
112 2iks_A DNA-binding transcripti 26.2 3.1E+02 0.011 23.8 9.2 73 184-257 126-205 (293)
113 3bvr_A NOTI restriction endonu 25.2 13 0.00046 35.1 -0.3 29 244-272 70-100 (383)
114 3rot_A ABC sugar transporter, 24.9 2.9E+02 0.0098 24.2 8.7 72 184-257 116-196 (297)
115 3gv0_A Transcriptional regulat 24.8 1.6E+02 0.0056 25.7 7.0 73 183-257 114-196 (288)
116 3c9h_A ABC transporter, substr 24.4 78 0.0027 29.1 4.9 56 197-257 34-95 (355)
117 2nwf_A Ubiquinol-cytochrome C 24.3 20 0.00067 29.8 0.6 25 283-307 96-120 (141)
118 3k9c_A Transcriptional regulat 24.3 1.8E+02 0.0062 25.5 7.2 73 183-257 113-193 (289)
119 3cis_A Uncharacterized protein 24.1 2.6E+02 0.0088 24.9 8.3 26 178-204 30-55 (309)
120 3uor_A ABC transporter sugar b 23.7 1.2E+02 0.0041 29.0 6.3 59 196-258 29-92 (458)
121 1dbq_A Purine repressor; trans 23.4 2.7E+02 0.0094 24.0 8.2 73 184-257 114-195 (289)
122 3cfz_A UPF0100 protein MJ1186; 23.3 1.7E+02 0.0059 26.0 6.9 46 213-258 17-64 (292)
123 3qk7_A Transcriptional regulat 23.2 2.2E+02 0.0075 25.0 7.6 74 183-257 113-195 (294)
124 2rgy_A Transcriptional regulat 23.1 1.7E+02 0.0057 25.7 6.7 74 183-257 115-197 (290)
125 3cij_A UPF0100 protein AF_0094 22.7 1.1E+02 0.0039 27.3 5.5 46 213-258 17-64 (295)
126 1elj_A Maltodextrin-binding pr 22.5 84 0.0029 29.1 4.7 44 213-256 20-66 (381)
127 3g1w_A Sugar ABC transporter; 21.3 2.6E+02 0.0088 24.4 7.6 73 184-258 113-196 (305)
128 3gyb_A Transcriptional regulat 21.2 1.8E+02 0.0063 25.1 6.5 72 183-257 105-184 (280)
129 3bbl_A Regulatory protein of L 21.0 2E+02 0.0068 25.1 6.8 20 238-257 175-196 (287)
130 3g85_A Transcriptional regulat 20.9 3.5E+02 0.012 23.3 8.4 74 183-257 114-196 (289)
131 3ab8_A Putative uncharacterize 20.4 2.6E+02 0.009 24.1 7.4 77 178-257 165-242 (268)
132 2b3f_A Glucose-binding protein 20.2 1.3E+02 0.0045 27.9 5.6 45 212-256 14-66 (400)
133 3dbi_A Sugar-binding transcrip 20.1 2.3E+02 0.0077 25.5 7.1 74 183-257 168-250 (338)
No 1
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A
Probab=100.00 E-value=1.9e-110 Score=814.02 Aligned_cols=315 Identities=37% Similarity=0.565 Sum_probs=304.8
Q ss_pred CCccccCCCCcCHHHHHHHHHHHHhhcCCCceeEEEEeeeeeecCCCCccccchhHHHHhhhcCEEEEcccc--------
Q psy8787 44 WSWRGLKVQGLGEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVCNSNYATKWFSE-------- 115 (364)
Q Consensus 44 ~~i~~i~GDGIGp~EV~a~~r~Vl~a~g~~i~~~~vdig~~re~~~G~Y~~lp~etl~~ik~~daiLkGav~-------- 115 (364)
++|++|||||||| ||++++++||++++++++|+++++|...++++|+ ++|++++++++++|++||||++
T Consensus 2 ~~I~vipGDGIGp-Ev~~~a~~vl~a~~~~~~~~~~~~G~~~~~~~g~--~lp~~tl~~~~~~da~l~Gav~~P~~~~~~ 78 (333)
T 1x0l_A 2 YRICLIEGDGIGH-EVIPAARRVLEATGLPLEFVEAEAGWETFERRGT--SVPEETVEKILSCHATLFGAATSPTRKVPG 78 (333)
T ss_dssp EEEEEEEESTTHH-HHHHHHHHHHHTTTCCEEEEEECCSHHHHHHHSS--SSCHHHHHHHHTSSEEEEEECCCCSSCCTT
T ss_pred cEEEEECCCCcCH-HHHHHHHHHHHHcCCCeEEEEEecchHHHHhhCC--cCcHHHHHHHHHCCEEEECCccCCCCCCcC
Confidence 5789999999999 9999999999999999999999999988888997 8999999999999999999994
Q ss_pred -cc----hhhhcccceeeeeeeccCCCCCCCCCccEEEEccCCCccccCceeeeeCCEEEEEEEecHHHHHHHHHHHHHH
Q psy8787 116 -RG----ASVEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLITEEASSRVAEFAFEY 190 (364)
Q Consensus 116 -~g----LR~~ldlyanvRP~~~~pg~~~~~~~iD~vIvREnteg~Y~g~~~~~~~~~a~~~~~~t~~~~eriar~Af~~ 190 (364)
++ ||+.||||+|+||||++| +++|++++|+|||||||||+|+|.+++ .++++.+++++||++++||+|+||+|
T Consensus 79 ~~s~~l~lR~~ldlyan~RP~~~~p-~~s~~~~vD~vivREnteg~Y~g~~~~-~~~~a~~~~~~T~~~~eRiar~AF~~ 156 (333)
T 1x0l_A 79 FFGAIRYLRRRLDLYANVRPAKSRP-VPGSRPGVDLVIVRENTEGLYVEQERR-YLDVAIADAVISKKASERIGRAALRI 156 (333)
T ss_dssp CCCHHHHHHHHTTCCEEEEEEECCS-STTCCSSCEEEEEEECGGGTCCCCEEE-ETTEEEEEEEEEHHHHHHHHHHHHHH
T ss_pred ccChhHHHHHHcCCEEEEEEEeecc-CCCCCCCCCEEEEecCccceecccccc-CCCeEEEEEEecHHHHHHHHHHHHHH
Confidence 11 999999999999999999 999999999999999999999999887 67899999999999999999999999
Q ss_pred HHhCCCCceEEEEeCcccccccHHHHHHHHHHhhcCCCeeEeeEeHHHHHHHHhcCCCCccEEEeCCCcchhhhhhhhhc
Q psy8787 191 AKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGL 270 (364)
Q Consensus 191 A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp~i~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~GDIlSD~aa~l 270 (364)
|++|+|||||+|||+|||+.|||||+++|+|++++||+|+++|++||++|||||++|++||||||+|||||||||++|++
T Consensus 157 A~~r~rkkvt~v~KaNvlk~t~glf~~~~~eva~eyp~I~~~~~~vD~~~m~lv~~P~~FDVivt~NlfGDIlSD~aa~l 236 (333)
T 1x0l_A 157 AEGRPRKTLHIAHKANVLPLTQGLFLDTVKEVAKDFPLVNVQDIIVDNCAMQLVMRPERFDVIVTTNLLGDILSDLAAGL 236 (333)
T ss_dssp HHTSTTCEEEEEECTTTCTTHHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHH
T ss_pred HHhcCCCeEEEEecCccchhhhHHHHHHHHHHHHHCCCceEEEEEHHHHHHHHhhCcccceEEEEcCccchhHhHHHHhh
Confidence 99998889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccccccCCCceeEeeccCCCCCccCCCCCChhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHcCccccCCCCC
Q psy8787 271 VGGLGLTPSGNIGLNGALFESVHGTAPDIAGKDLANPTALLLSAVMMLRHLDLNTHADVIQKAALDTIKEGKYRTGDLGG 350 (364)
Q Consensus 271 ~G~lGl~psa~ig~~~~~fEp~HGsapdiaGk~~aNP~a~ils~ammL~~lg~~~~a~~i~~Av~~~~~~g~~~T~Dlgg 350 (364)
+||+||+||+|+|++++||||+|||||||||||+|||+|+|||++|||||||++++|++|++||.+++++| ++|+||||
T Consensus 237 ~GslGl~psanig~~~a~fEp~HGSAPdiaGk~iANP~A~IlS~ammL~~lg~~~~A~~Ie~Av~~~l~~g-~~T~DlgG 315 (333)
T 1x0l_A 237 VGGLGLAPSGNIGDTTAVFEPVHGSAPDIAGKGIANPTAAILSAAMMLDYLGEKEAAKRVEKAVDLVLERG-PRTPDLGG 315 (333)
T ss_dssp TTCSTTCEEEEECSSCEEEEESSCCCGGGTTSSCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-CCCGGGTC
T ss_pred cCCcccceeeEECCCceEEeCCCCChhhhcCCCCcCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHcC-CccCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 58999999
Q ss_pred CCCHHHHHHHHHhC
Q psy8787 351 KAKCSEFTNEICSK 364 (364)
Q Consensus 351 ~~~T~e~~~av~~~ 364 (364)
++||+||+|+|+++
T Consensus 316 ~~~T~e~~daV~~~ 329 (333)
T 1x0l_A 316 DATTEAFTEAVVEA 329 (333)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999999863
No 2
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B
Probab=100.00 E-value=3.5e-109 Score=810.30 Aligned_cols=319 Identities=47% Similarity=0.748 Sum_probs=308.5
Q ss_pred CCCCccccCCCCcCHHHHHHHHHHHHhhcCCCceeEEEEeeeeeecCCCCccccchhHHHHhhhcCEEEEccccc-----
Q psy8787 42 SQWSWRGLKVQGLGEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVCNSNYATKWFSER----- 116 (364)
Q Consensus 42 ~~~~i~~i~GDGIGp~EV~a~~r~Vl~a~g~~i~~~~vdig~~re~~~G~Y~~lp~etl~~ik~~daiLkGav~~----- 116 (364)
+.++|++|||||||| ||++++++|+++++++++|+++++|... +++|+ ++|++++++++++|++||||++.
T Consensus 20 ~~~~I~vipGDGIGp-Ev~~~~~~Vl~a~~~~i~~~~~~~G~~~-~~~g~--~lp~~tl~~~~~~da~l~Gav~~P~~~~ 95 (354)
T 3blx_B 20 GKYTVSFIEGDGIGP-EISKSVKKIFSAANVPIEWESCDVSPIF-VNGLT--TIPDPAVQSITKNLVALKGPLATPIGKG 95 (354)
T ss_dssp SCEECBCCCCSTTHH-HHHHHHHHHHHTTTCSEECCCCCCCCEE-ETTEE--ECCHHHHHHHHHHSEEEECCCCCC----
T ss_pred CceEEEEECCCCcCH-HHHHHHHHHHHHcCCCeEEEEEEechhh-hhhCC--CCCHHHHHHHHHCCEEEECCccCCCCcc
Confidence 457899999999999 9999999999999999999999999988 89996 89999999999999999999951
Q ss_pred --c----hhhhcccceeeeeeeccCCCCCCCCCccEEEEccCCCccccCceeeeeCCEEEEEEEecHHHHHHHHHHHHHH
Q psy8787 117 --G----ASVEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLITEEASSRVAEFAFEY 190 (364)
Q Consensus 117 --g----LR~~ldlyanvRP~~~~pg~~~~~~~iD~vIvREnteg~Y~g~~~~~~~~~a~~~~~~t~~~~eriar~Af~~ 190 (364)
+ ||+.||||+|+|||+++||+++|++++|+|||||||||+|+|.+++..++++.+++++||++++||+|+||+|
T Consensus 96 ~~s~~l~lR~~ldlyan~RP~~~~pg~~s~~~~vD~vivREnteg~Y~g~e~~~~~~~a~~~~~~T~~~~eRiar~AFe~ 175 (354)
T 3blx_B 96 HRSLNLTLRKTFGLFANVRPAKSIEGFKTTYENVDLVLIRENTEGEYSGIEHIVCPGVVQSIKLITRDASERVIRYAFEY 175 (354)
T ss_dssp CCCHHHHHHHHHTEEEEEEEEECCTTCCCSSCSCEEEEEEECSSEEEEEEEEECSTTEEEEEEEEEHHHHHHHHHHHHHH
T ss_pred ccCchHHHHHHcCCEEEEEEecccCCCCCCCCCccEEEEecCcCCcccCCcccccCCEEEEEEEEcHHHHHHHHHHHHHH
Confidence 1 9999999999999999999999999999999999999999999988778899999999999999999999999
Q ss_pred HHhCCCCceEEEEeCcccccccHHHHHHHHHHhhcCCCeeEeeEeHHHHHHHHhcCCCCcc--EEEeCCCcchhhhhhhh
Q psy8787 191 AKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLDTVCLNMVQDPTQYD--VLVMPNLYGDILSDMCA 268 (364)
Q Consensus 191 A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp~i~~~~~~vD~~~~~lv~~P~~fd--Vivt~Nl~GDIlSD~aa 268 (364)
|++|+|+|||+|||+|||+.+||||+++|+|++++||+|+++|++||+||||||++|++|| ||||+|||||||||++|
T Consensus 176 A~~r~rkkVt~v~KaNvlk~sdglf~~~~~eva~eypdI~~~~~~vD~~~m~lv~~P~~FD~~Vivt~NlfGDIlSD~aa 255 (354)
T 3blx_B 176 ARAIGRPRVIVVHKSTIQRLADGLFVNVAKELSKEYPDLTLETELIDNSVLKVVTNPSAYTDAVSVCPNLYGDILSDLNS 255 (354)
T ss_dssp HHHTTCSEEEEEESCTTTCHHHHHHHHHHHHHGGGCTTSEEEEEEHHHHHHHHHHCGGGGTTEEEEECHHHHHHHHHHHH
T ss_pred HHhcCCCeEEEEECCcchHhHHHHHHHHHHHHHHHCCCceEEEEEHHHHHHHHhhChhhCCceEEEecCcccchhHHHHH
Confidence 9999889999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred hc-cCCCCcccccccCCCceeEeeccCCCCCccCCCCCChhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHcC-ccccC
Q psy8787 269 GL-VGGLGLTPSGNIGLNGALFESVHGTAPDIAGKDLANPTALLLSAVMMLRHLDLNTHADVIQKAALDTIKEG-KYRTG 346 (364)
Q Consensus 269 ~l-~G~lGl~psa~ig~~~~~fEp~HGsapdiaGk~~aNP~a~ils~ammL~~lg~~~~a~~i~~Av~~~~~~g-~~~T~ 346 (364)
++ +||+||+||+|+|++++||||+|||||||||||+|||+|+|||++|||||||++++|++|++||.+++++| +++|+
T Consensus 256 ~l~~GslGl~pSanig~~~a~fEp~HGSAPdiAGk~iANP~A~IlS~ammL~~lg~~~~A~~Ie~Av~~~l~~g~~~~T~ 335 (354)
T 3blx_B 256 GLSAGSLGLTPSANIGHKISIFEAVHGSAPDIAGQDKANPTALLLSSVMMLNHMGLTNHADQIQNAVLSTIASGPENRTG 335 (354)
T ss_dssp HHHTSSGGGCEEEEEESSCEEEEECSCCCGGGTTTTCCCTHHHHHHHHHHHHHHTCHHHHHHHHHTHHHHHTSSTTSSCG
T ss_pred hhccCCccccceeEECCCceEEecCCCChhhhcCCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcCCCccCC
Confidence 99 99999999999999999999999999999999999999999999999999999999999999999999999 47999
Q ss_pred CCCCCCCHHHHHHHHHhC
Q psy8787 347 DLGGKAKCSEFTNEICSK 364 (364)
Q Consensus 347 Dlgg~~~T~e~~~av~~~ 364 (364)
||||++||+||+|+|+++
T Consensus 336 DlgG~~~T~e~~dav~~~ 353 (354)
T 3blx_B 336 DLAGTATTSSFTEAVIKR 353 (354)
T ss_dssp GGTCCCCHHHHHHHHHHT
T ss_pred CcCCCCCHHHHHHHHHhh
Confidence 999999999999999975
No 3
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X*
Probab=100.00 E-value=3.2e-109 Score=813.90 Aligned_cols=319 Identities=29% Similarity=0.491 Sum_probs=304.0
Q ss_pred CCCCccccCCCCcCHHHHHHHHHHHHhhc----CCCceeEEEEeee-eeecCCCCccccchhHHHHhhhcCEEEEcccc-
Q psy8787 42 SQWSWRGLKVQGLGEFNLYANVRPCRSLE----GYPTLYDDVDVVT-IRENTEGEYSGIEHEIVDGVCNSNYATKWFSE- 115 (364)
Q Consensus 42 ~~~~i~~i~GDGIGp~EV~a~~r~Vl~a~----g~~i~~~~vdig~-~re~~~G~Y~~lp~etl~~ik~~daiLkGav~- 115 (364)
+.++|++|||||||| ||++++++||+++ +++++|+++++|. ..++++|+ ++|++++++|+++|++||||++
T Consensus 4 ~~~~I~vipGDGIGp-Ev~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~~g~--~lp~~tl~~~~~~da~L~Gavg~ 80 (364)
T 3flk_A 4 HSFRIAAIPGDGIGL-EVLPEGIRVLEAAALKHGLALEFDTFEWASCDYYLQHGK--MMPDDWAEQLKQYDAIYFGAVGW 80 (364)
T ss_dssp -CEEEEEEEESTTHH-HHHHHHHHHHHHHHHHHTCCEEEEECCCSSHHHHHHHSS--SSCTTHHHHHTTSSEEEEEECCB
T ss_pred CceEEEEECCCcccH-HHHHHHHHHHHHHHHhcCCCeEEEEEeCCcHHHHhccCC--cCCHHHHHHHHHCCEEEECCccC
Confidence 568999999999999 9999999999885 6899999999998 77888997 8999999999999999999983
Q ss_pred -c---------c----hhhhcccceeeeeeeccCCCCCCC-----CCccEEEEccCCCccccCceeeee----CCEEEEE
Q psy8787 116 -R---------G----ASVEFNLYANVRPCRSLEGYPTLY-----DDVDVVTIRENTEGEYSGIEHEIV----DGVVQSI 172 (364)
Q Consensus 116 -~---------g----LR~~ldlyanvRP~~~~pg~~~~~-----~~iD~vIvREnteg~Y~g~~~~~~----~~~a~~~ 172 (364)
+ . ||+.||||+|+||||++||+++|+ +++|+|||||||||+|+|++++.. ++++.++
T Consensus 81 P~~~~~~~~~~s~~l~LR~~ldlyanvRP~~~~pg~~splk~~~~~~vD~vivREnteG~Y~g~~~~~~~~~~~~~a~~~ 160 (364)
T 3flk_A 81 PDKVPDHISLWGSLLKFRREFDQYVNIRPVRLFPGVPCALANRKVGDIDFVVVRENTEGEYSSLGGIMFENTENEIVIQE 160 (364)
T ss_dssp TTTBCHHHHHHTTHHHHHHHTTCCEEEEEEECCTTCCCSBTTCCTTSSEEEEEEECSSBTCCCCEEEESTTSTTCEEEEE
T ss_pred cccCCCCcCcccchHHHHHHhCCeEEEEEEeccCCcccccccccCCCCCEEEEeeCCCceecCcCceeccCCCCCEEEEE
Confidence 1 1 999999999999999999999887 679999999999999999988764 5789999
Q ss_pred EEecHHHHHHHHHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhhcCCCeeEeeEeHHHHHHHHhcCCCCccE
Q psy8787 173 KLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLDTVCLNMVQDPTQYDV 252 (364)
Q Consensus 173 ~~~t~~~~eriar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp~i~~~~~~vD~~~~~lv~~P~~fdV 252 (364)
++|||+++|||+|+||+||++|++||||+|||+|||+.|+|||+++|+|++++||+|+++|++||+||||||++|++|||
T Consensus 161 ~~~T~~~~eRIar~AFe~A~~r~~kkVt~v~KaNvlk~s~glf~~~~~eva~eypdv~~~~~~vD~~am~lv~~P~~FDV 240 (364)
T 3flk_A 161 SIFTRRGVDRILKYAFDLAEKRERKHVTSATKSNGMAISMPYWDKRTEAMAAHYPHVSWDKQHIDILCARFVLQPERFDV 240 (364)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHSSSCEEEEEECTTTSTTHHHHHHHHHHHHHTTCTTCEEEEEEHHHHHHHHHHCGGGCSE
T ss_pred EEECHHHHHHHHHHHHHHHHhcCCCeEEEEECcchhhhHHHHHHHHHHHHHHHCCCceEEeeEHHHHHHHHHhCcccCcE
Confidence 99999999999999999999998889999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCcchhhhhhhhhccCCCCcccccccCCCc---eeEeeccCCCCCccCCCCCChhHHHHHHHHHHHhcC-----cH
Q psy8787 253 LVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNG---ALFESVHGTAPDIAGKDLANPTALLLSAVMMLRHLD-----LN 324 (364)
Q Consensus 253 ivt~Nl~GDIlSD~aa~l~G~lGl~psa~ig~~~---~~fEp~HGsapdiaGk~~aNP~a~ils~ammL~~lg-----~~ 324 (364)
|||+|||||||||++|+++||+||+||+|+|+++ +||||+|||||||||||+|||+|+|||++||||||| +.
T Consensus 241 ivt~NlfGDILSD~aa~l~GslGl~pSanig~~~~~~a~fEp~HGSAPdiAGk~iANP~A~IlS~ammL~~lg~~~~~~~ 320 (364)
T 3flk_A 241 VVASNLFGDILSDLGPACAGTIGIAPSANLNPERNFPSLFEPVHGSAPDIFGKNIANPIAMIWSGALMLEFLGQGDERYQ 320 (364)
T ss_dssp EEECHHHHHHHHHHHHHHTTCSTTCEEEEECTTCSSCEEEEESSCCCTTTTTSSCCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred EEecccchHHHHHHHHHhcCCcccccccccCCCCCcceEEecCCCCchhhcCCCccCcHHHHHHHHHHHHHhCcccchhH
Confidence 9999999999999999999999999999999876 999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCCCHHHHHHHHHhC
Q psy8787 325 THADVIQKAALDTIKEGKYRTGDLGGKAKCSEFTNEICSK 364 (364)
Q Consensus 325 ~~a~~i~~Av~~~~~~g~~~T~Dlgg~~~T~e~~~av~~~ 364 (364)
++|++|++||.+++++|+ +|+||||.+||+||+|+|+++
T Consensus 321 ~~A~~Ie~Av~~~l~~G~-~T~Dlgg~~~T~e~~~aV~~~ 359 (364)
T 3flk_A 321 RAHDDMLNAIERVIADGS-VTPDMGGTLSTQQVGAAISDT 359 (364)
T ss_dssp HHHHHHHHHHHHHHHHTC-CCGGGTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC-CCcccCCCcCHHHHHHHHHHH
Confidence 999999999999999996 899999999999999999863
No 4
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} SCOP: c.77.1.0 PDB: 3ty3_A
Probab=100.00 E-value=7.3e-109 Score=810.44 Aligned_cols=319 Identities=35% Similarity=0.542 Sum_probs=301.5
Q ss_pred CCCCCccccCCCCcCHHHHHHHHHHHHhhc----CCCceeEEEEeeeeeecCCCCccccchhHHHHhhh-cCEEEEcccc
Q psy8787 41 ISQWSWRGLKVQGLGEFNLYANVRPCRSLE----GYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVCN-SNYATKWFSE 115 (364)
Q Consensus 41 ~~~~~i~~i~GDGIGp~EV~a~~r~Vl~a~----g~~i~~~~vdig~~re~~~G~Y~~lp~etl~~ik~-~daiLkGav~ 115 (364)
+..++|++|||||||| ||++++++||+++ +++++|.++++|...++++|+ ++|+++++.+++ +|++||||++
T Consensus 8 ~~~~~I~vipGDGIGp-EV~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~--~lp~~tl~~~~~~~da~L~Gavg 84 (366)
T 3ty4_A 8 TRRIVLGLIPADGIGK-EVVPAARRLMENLPAKHKLKFDFIDLDAGWGTFERTGK--ALPERTVERLKTECNAALFGAVQ 84 (366)
T ss_dssp -CEEEEEEEEESTTHH-HHHHHHHHHHHTCCGGGCCEEEEEECCCSHHHHHHHSC--SSCHHHHHHHHHHCSEEEEEECC
T ss_pred CCceEEEEECCCccCH-HHHHHHHHHHHHHHHhcCCceEEEEecchHHHHHhhCC--CCCHHHHHHHHHhCCEEEECCcc
Confidence 5678999999999999 9999999999986 567889999999888889997 899999999999 5999999984
Q ss_pred ----c--c-------hhhhcccceeeeeeeccCCCCCCCCCccEEEEccCCCccccCceeee----eCCEEEEEEEecHH
Q psy8787 116 ----R--G-------ASVEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEI----VDGVVQSIKLITEE 178 (364)
Q Consensus 116 ----~--g-------LR~~ldlyanvRP~~~~pg~~~~~~~iD~vIvREnteg~Y~g~~~~~----~~~~a~~~~~~t~~ 178 (364)
. + |||.||||+|+||||++||+. ..++|+|||||||||+|+|++++. .++++.++++|||+
T Consensus 85 ~P~~~~~~~~s~~l~LRk~ldlyaNvRP~~~~~g~~--~~~vD~vivREnTeG~Y~g~e~~~~~~~~~~~a~~~~~~Tr~ 162 (366)
T 3ty4_A 85 SPTHKVAGYSSPIVALRKKMGLYANVRPVKSLDGAK--GKPVDLVIVRENTECLYVKEERMVQNTPGKRVAEAIRRISEE 162 (366)
T ss_dssp CCSSCCTTCCCHHHHHHHHTTCCEEEEEEECCTTCS--SSCCEEEEEEECSCBGGGCCEEEEECCTTCCEEEEEEEEEHH
T ss_pred CCCCCCcccccchHHHHHHhCCeEEEEEEeccCCCC--CCCCcEEEEeeCCCCEeecCcceeccCCCCceEEEEEEecHH
Confidence 1 1 999999999999999999984 347999999999999999999876 35689999999999
Q ss_pred HHHHHHHHHHHHHHhC------------CCCceEEEEeCcccccccHHHHHHHHHH---hhcCCCeeEeeEeHHHHHHHH
Q psy8787 179 ASSRVAEFAFEYAKTN------------NRSKVTAVHKANIMRMSDGLFLRCCRDA---AEKFPEVKFEEKYLDTVCLNM 243 (364)
Q Consensus 179 ~~eriar~Af~~A~~~------------~~~~Vt~v~KaNv~~~~~~lf~~~~~~v---a~~yp~i~~~~~~vD~~~~~l 243 (364)
++|||+|+||+||++| +|+|||+|||+|||+.|||||+++|+|+ +++||+|+++|++||+|||||
T Consensus 163 ~~eRIar~AFe~A~~r~~~~~~~~~~~~~rkkVt~v~KaNVl~~s~glf~~~~~ev~~~a~eypdV~~~~~~VD~~am~l 242 (366)
T 3ty4_A 163 ASTKIGKMAFEIAKSRQKIRESGTYSIHKKPLVTIIHKSNVMSVTDGLFRESCRHAQSLDPSYASINVDEQIVDSMVYRL 242 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCSCSSCEEEEEECTTTCTTHHHHHHHHHHHHGGGCGGGTTSEEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCccccccccccCCCCeEEEEECCcchHhHHHHHHHHHHHHHHhHhhCCCceEEeeeHHHHHHHH
Confidence 9999999999999998 6889999999999999999999999999 899999999999999999999
Q ss_pred hcCCCCccEEEeCCCcchhhhhhhhhccCCCCcccccccCCCceeEeeccCCCCCccCCCCCChhHHHHHHHHHHHhcCc
Q psy8787 244 VQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGTAPDIAGKDLANPTALLLSAVMMLRHLDL 323 (364)
Q Consensus 244 v~~P~~fdVivt~Nl~GDIlSD~aa~l~G~lGl~psa~ig~~~~~fEp~HGsapdiaGk~~aNP~a~ils~ammL~~lg~ 323 (364)
|++|++||||||+|||||||||++|+++||+||+||+|+|++.+||||+|||||||||||+|||+|+|||++|||||||+
T Consensus 243 v~~P~~FDViVt~NlfGDILSD~aa~l~GslGl~pSanig~~~a~fEpvHGSAPdIaGk~iANP~A~IlS~amML~~lg~ 322 (366)
T 3ty4_A 243 FREPECFDVVVAPNLYGDILSDGAASLIGSLGLVPSANVGDNFVMSEPVHGSAPDIAGRGIANPVATFRSVALMLEFMGH 322 (366)
T ss_dssp HHCGGGCSEEEECHHHHHHHHHHHHGGGSCGGGCCCEEECSSCEEECCSSCCCTTTTTSSCCCCHHHHHHHHHHHHHTTC
T ss_pred HhCcccCcEEEECccchHHHHHHHHHhcCchhhhcceeeCCCceEEecCCCChhhcCCCCccCcHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCccccCCCCCCCCHHHHHHHHHhC
Q psy8787 324 NTHADVIQKAALDTIKEGKYRTGDLGGKAKCSEFTNEICSK 364 (364)
Q Consensus 324 ~~~a~~i~~Av~~~~~~g~~~T~Dlgg~~~T~e~~~av~~~ 364 (364)
+++|++|++||.+++++|+++|+||||++||+||+|+|+++
T Consensus 323 ~~~A~~Ie~Av~~~l~~G~~~T~Dlgg~~~T~e~~daV~~~ 363 (366)
T 3ty4_A 323 QDAAADIYTAVDKVLTEGKVLTPDLGGKSGTNEITDAVLAN 363 (366)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCCGGGTSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccCcccCCCcCHHHHHHHHHHH
Confidence 99999999999999999966999999999999999999863
No 5
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A*
Probab=100.00 E-value=1.1e-108 Score=805.56 Aligned_cols=316 Identities=39% Similarity=0.638 Sum_probs=302.9
Q ss_pred CCCCccccCCCCcCHHHHHHHHHHHHhhcCCCceeEEEEeeeeeecCCCCccccchhHHHHhhhcCEEEEccccc-----
Q psy8787 42 SQWSWRGLKVQGLGEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVCNSNYATKWFSER----- 116 (364)
Q Consensus 42 ~~~~i~~i~GDGIGp~EV~a~~r~Vl~a~g~~i~~~~vdig~~re~~~G~Y~~lp~etl~~ik~~daiLkGav~~----- 116 (364)
+.++|++|||||||| ||++++++|+++++++++|+++++|. ++|+ ++|++++++++++|++||||++.
T Consensus 16 ~~~~I~vipGDGIGp-Ev~~~~~~Vl~a~~~~i~~~~~~~G~----~~g~--~lp~~tl~~~~~~da~l~Gav~~P~~~~ 88 (349)
T 3blx_A 16 GRFTVTLIPGDGVGK-EITDSVRTIFEAENIPIDWETINIKQ----TDHK--EGVYEAVESLKRNKIGLKGLWHTPADQT 88 (349)
T ss_dssp CCEEEEEEEESHHHH-HHHHHHHHHHHHTTCSEEEEECCCSS----TTCH--HHHHHHHHHHHHHSEEEEEECCSHHHHH
T ss_pred CceEEEEECCCCcCH-HHHHHHHHHHHHcCCCeEEEEEecCc----ccCC--cCcHHHHHHHHHCCEEEECCccCCCCCC
Confidence 357899999999999 99999999999999999999999987 6786 89999999999999999999951
Q ss_pred ---c----hhhhcccceeeeeeeccCCCCCCCCCccEEEEccCCCccccCceeeeeCCEEEEEEEecHHHHHHHHHHHHH
Q psy8787 117 ---G----ASVEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLITEEASSRVAEFAFE 189 (364)
Q Consensus 117 ---g----LR~~ldlyanvRP~~~~pg~~~~~~~iD~vIvREnteg~Y~g~~~~~~~~~a~~~~~~t~~~~eriar~Af~ 189 (364)
+ ||+.||||+|+|||+++||++++++++|+|||||||||+|+|.+++..++++.+++++||++++||+|+||+
T Consensus 89 ~~~s~~l~lR~~ldlyan~RP~~~~pg~~~~~~~vD~vivREnteg~Y~g~e~~~~~gva~~~~~~T~~~~eRiar~AF~ 168 (349)
T 3blx_A 89 GHGSLNVALRKQLDIYANVALFKSLKGVKTRIPDIDLIVIRENTEGEFSGLEHESVPGVVESLKVMTRPKTERIARFAFD 168 (349)
T ss_dssp TCHHHHHHHHHTSCEEEEEEEEECCTTCCCSSCSCEEEEEEECSSGGGGCEEEECSTTEEEEEEEEEHHHHHHHHHHHHH
T ss_pred CccCchHHHHHHcCCEEEEEEEeccCCCCCCCCCcCEEEEecCCCCcEeCCceeccCCeEEEEEEeCHHHHHHHHHHHHH
Confidence 1 999999999999999999999999999999999999999999998877889999999999999999999999
Q ss_pred HHHhCCCCceEEEEeCcccccccHHHHHHHHHHh-hcCCCeeEeeEeHHHHHHHHhcCCCCccEEEeCCCcchhhhhhhh
Q psy8787 190 YAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAA-EKFPEVKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCA 268 (364)
Q Consensus 190 ~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va-~~yp~i~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~GDIlSD~aa 268 (364)
||++|+|+|||+|||+|||+.|||+|+++|+|++ ++||+|+++|++||+||||||++|++||||||+|||||||||++|
T Consensus 169 ~A~~r~rkkVt~v~KaNvlk~sdglf~~~~~eva~~eyp~i~~~~~~vD~~~~qlv~~P~~FDVivt~NlfGDIlSD~aa 248 (349)
T 3blx_A 169 FAKKYNRKSVTAVHKANIMKLGDGLFRNIITEIGQKEYPDIDVSSIIVDNASMQAVAKPHQFDVLVTPSMYGTILGNIGA 248 (349)
T ss_dssp HHHHTTCCEEEEEECTTTSTTHHHHHHHHHHHHHHHHCTTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHH
T ss_pred HHHhcCCCcEEEEeCCccchhhHHHHHHHHHHHHHhhCCCeeEEEeeHHHHHHHHhhCcccccEEEECCcchHHHHHHHH
Confidence 9999988899999999999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred hccCCCCcccccccCCCceeEeecc-CCCCCccCCCCCChhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHcCccccCC
Q psy8787 269 GLVGGLGLTPSGNIGLNGALFESVH-GTAPDIAGKDLANPTALLLSAVMMLRHLDLNTHADVIQKAALDTIKEGKYRTGD 347 (364)
Q Consensus 269 ~l~G~lGl~psa~ig~~~~~fEp~H-GsapdiaGk~~aNP~a~ils~ammL~~lg~~~~a~~i~~Av~~~~~~g~~~T~D 347 (364)
+++||+||+||+|+|++++||||+| ||||||||||+|||+|+|||++|||||||++++|++|++||.+++++|+++|+|
T Consensus 249 ~l~GslGl~pSanig~~~a~fEpvH~GSAPdiAGk~iANP~A~IlS~ammL~~lg~~~~A~~Ie~Av~~~l~~G~~~T~D 328 (349)
T 3blx_A 249 ALIGGPGLVAGANFGRDYAVFEPGSRHVGLDIKGQNVANPTAMILSSTLMLNHLGLNEYATRISKAVHETIAEGKHTTRD 328 (349)
T ss_dssp HHHTCGGGCEEEEEESSCEEECCTTTTSCC--CCTTCSCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHSSSSCBGG
T ss_pred hhcCCcccceEEEECCCceeEcCCCCCchhhhcCCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHcCCccCCC
Confidence 9999999999999999999999999 999999999999999999999999999999999999999999999999779999
Q ss_pred CCCCCCHHHHHHHHHhC
Q psy8787 348 LGGKAKCSEFTNEICSK 364 (364)
Q Consensus 348 lgg~~~T~e~~~av~~~ 364 (364)
|||++||+||+|+|+++
T Consensus 329 lgg~~~T~e~~daI~~~ 345 (349)
T 3blx_A 329 IGGSSSTTDFTNEIINK 345 (349)
T ss_dssp GTCCBCHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHH
Confidence 99999999999999873
No 6
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana}
Probab=100.00 E-value=5.4e-109 Score=819.03 Aligned_cols=351 Identities=29% Similarity=0.483 Sum_probs=298.5
Q ss_pred CccccccccccccccceeEeeccchhhhcccccCCCCCCCCccccCCCCcCHHHHHHHHHHHHhhc----CCCceeEEEE
Q psy8787 5 PTLSLLKLPLQCNTVETISYLTLSELISAQYINTPSISQWSWRGLKVQGLGEFNLYANVRPCRSLE----GYPTLYDDVD 80 (364)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~i~GDGIGp~EV~a~~r~Vl~a~----g~~i~~~~vd 80 (364)
+.+++++.|..|+|+++++ ...+. +.+-. ..++.+.++|++|||||||| ||++++++||+++ +++++|++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~-~~~~~~~~~I~vipGDGIGp-EV~~~a~~Vl~a~~~~~~~~~~~~~~~ 82 (405)
T 3r8w_A 7 TNIRTVKVPATFRAVSKQS-LAPFR-VRCAV-ASPGKKRYTITLLPGDGIGP-EVVSIAKNVLQQAGSLEGVEFNFREMP 82 (405)
T ss_dssp -------------------------------------CEEEEEEEEESTTHH-HHHHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred cceeccccchhhhcccccc-cCcce-eEeec-ccccCCCeEEEEECCCcccH-HHHHHHHHHHHHHHHhcCCceEEEEEE
Confidence 3488999999999999999 44433 33322 23335778999999999999 9999999999987 6889999999
Q ss_pred eeeeeecCCCCccccchhHHHHhhhcCEEEEccccc--------------c---hhhhcccceeeeeeeccCCC--CCCC
Q psy8787 81 VVTIRENTEGEYSGIEHEIVDGVCNSNYATKWFSER--------------G---ASVEFNLYANVRPCRSLEGY--PTLY 141 (364)
Q Consensus 81 ig~~re~~~G~Y~~lp~etl~~ik~~daiLkGav~~--------------g---LR~~ldlyanvRP~~~~pg~--~~~~ 141 (364)
+|..+++++|+ ++|+++++.++++|++||||++. + ||+.||||+|+||||++||+ .+|+
T Consensus 83 ~G~~~~~~~G~--~lp~~tl~~~k~~daiL~Gavg~P~~~~~~~~~~p~~~ll~LRk~ldLyaNlRP~k~~~gl~~~spl 160 (405)
T 3r8w_A 83 IGGAALDLVGV--PLPEETISAAKESDAVLLGAIGGYKWDNNEKHLRPEKGLLQIRAALKVFANLRPATVLPQLVDASTL 160 (405)
T ss_dssp CHHHHHHHHSS--SSCHHHHHHHHHSSEEEEEECCCGGGTTSCGGGSHHHHHHHHHHHHTCCEEEEEEECCGGGGGGSSB
T ss_pred cCHHHHHhhCC--cCCHHHHHHHHHCCEEEEccccCCCccCCccccCcccchHHHHHHhCCeEEEEEeeccCCccccCcc
Confidence 99988888997 89999999999999999999841 1 89999999999999999998 4554
Q ss_pred -----CCccEEEEccCCCccccCceeeee-----CCEEEEEEEecHHHHHHHHHHHHHHHHhCCCCceEEEEeCcccccc
Q psy8787 142 -----DDVDVVTIRENTEGEYSGIEHEIV-----DGVVQSIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMS 211 (364)
Q Consensus 142 -----~~iD~vIvREnteg~Y~g~~~~~~-----~~~a~~~~~~t~~~~eriar~Af~~A~~~~~~~Vt~v~KaNv~~~~ 211 (364)
+++|+|||||||||+|+|+++... .+++.++++|||+++|||+|+||+||++| |+|||+|||+|||+.+
T Consensus 161 k~~~~~~vD~vIvREnTeG~Y~G~e~~~~~~~~~~~~a~~~~~~Tr~~~eRIar~AFe~A~~r-rkkVT~v~KaNVlk~s 239 (405)
T 3r8w_A 161 KREVAEGVDLMVVRELTGGIYFGEPRGIKTNENGEEVGFNTEVYAAHEIDRIARVAFETARKR-RGKLCSVDKANVLEAS 239 (405)
T ss_dssp CHHHHTTCEEEEEEECSCSTTTCSSCEEEECSSSCEEEEEEEEEEHHHHHHHHHHHHHHHHTT-TSEEEEEECTTTCHHH
T ss_pred ccccCCCceEEEEeeCCCCeecCCccccccCCCCceEEEEEEEecHHHHHHHHHHHHHHHHHc-CCeEEEEECchhhccc
Confidence 589999999999999999987642 34789999999999999999999999976 6899999999999965
Q ss_pred cHHHHHHHHHHhhcCCCeeEeeEeHHHHHHHHhcCCCCccEEEeCCCcchhhhhhhhhccCCCCcccccccCCCc-eeEe
Q psy8787 212 DGLFLRCCRDAAEKFPEVKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNG-ALFE 290 (364)
Q Consensus 212 ~~lf~~~~~~va~~yp~i~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~GDIlSD~aa~l~G~lGl~psa~ig~~~-~~fE 290 (364)
+||+++|+|++++||+|+++|++||++|||||++|++||||||+|||||||||++|+++||+||+||+|+|+++ +|||
T Consensus 240 -glf~~~~~eva~eYPdV~~~~~~VD~~amqLV~~P~~FDViVt~NlfGDILSD~aA~l~GslGl~pSanig~~~~a~fE 318 (405)
T 3r8w_A 240 -ILWRKRVTALASEYPDVELSHMYVDNAAMQLVRDPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLSDSGPGLFE 318 (405)
T ss_dssp -HHHHHHHHHHGGGSTTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHSCGGGCEEEEECSSSCCEEE
T ss_pred -cHHHHHHHHHHhHCCCCeEEeeeHHHHHHHHHhChhhCcEEeecchhhHHHHHHHHHhcCcccccceeeecCCCCeEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999874 9999
Q ss_pred eccCCCCCccCCCCCChhHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHHcCccccCCC--CCC--CCHHHHHHHHHhC
Q psy8787 291 SVHGTAPDIAGKDLANPTALLLSAVMMLRH-LDLNTHADVIQKAALDTIKEGKYRTGDL--GGK--AKCSEFTNEICSK 364 (364)
Q Consensus 291 p~HGsapdiaGk~~aNP~a~ils~ammL~~-lg~~~~a~~i~~Av~~~~~~g~~~T~Dl--gg~--~~T~e~~~av~~~ 364 (364)
|+|||||||||||+|||+|+|||++||||| ||++++|++|++||.+++++|. +|+|| ||+ +||+||+|+|+++
T Consensus 319 pvHGSAPDIAGk~iANP~A~IlS~amML~~slg~~~~A~~Ie~AV~~~l~~G~-~T~Dl~~gG~~~~~T~e~~~aV~~~ 396 (405)
T 3r8w_A 319 PIHGSAPDIAGQDKANPLATILSAAMLLKYGLGEEKAAKRIEDAVLVALNNGF-RTGDIYSAGTKLVGCKEMGEEVLKS 396 (405)
T ss_dssp ESSCCCGGGTTTTCCCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTTE-ECGGGCCTTSEECCHHHHHHHHHHH
T ss_pred cCCCChhhhCCCCCCCcHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHHHcCC-cCccccCCCCcccCHHHHHHHHHHH
Confidence 999999999999999999999999999999 9999999999999999999995 89999 999 9999999999863
No 7
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} SCOP: c.77.1.1 PDB: 3udo_A
Probab=100.00 E-value=1.8e-108 Score=806.42 Aligned_cols=317 Identities=28% Similarity=0.428 Sum_probs=300.1
Q ss_pred CCCCCccccCCCCcCHHHHHHHHHHHHhhc----CCCceeEEEEeeeeeecCCCCccccchhHHHHhhhcCEEEEcccc-
Q psy8787 41 ISQWSWRGLKVQGLGEFNLYANVRPCRSLE----GYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVCNSNYATKWFSE- 115 (364)
Q Consensus 41 ~~~~~i~~i~GDGIGp~EV~a~~r~Vl~a~----g~~i~~~~vdig~~re~~~G~Y~~lp~etl~~ik~~daiLkGav~- 115 (364)
+..++|++|||||||| ||++++++||+++ +++++|+++++|..+++++|+ ++|++++++++++|++||||++
T Consensus 4 m~~~~I~vipGDGIGp-EV~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~--~lp~~tl~~~~~~da~L~Gavg~ 80 (361)
T 3udu_A 4 MKTYKVAVLAGDGIGP-LVMKEALKILTFIAQKYNFSFELNEAKIGGASIDAYGV--ALSDETLKLCEQSDAILFGSVGG 80 (361)
T ss_dssp -CEEEEEEEEESTTHH-HHHHHHHHHHHHHHHHHTCEEEEEECCCTHHHHHHHSS--SSCHHHHHHHHTSSEEEEEECCC
T ss_pred CcceeEEEECCCccCH-HHHHHHHHHHHHHHHhcCCCEEEEEEeccHHHHHhhCC--cCCHHHHHHHHHCCcEEECCcCC
Confidence 5668999999999999 9999999999986 689999999999988888997 8999999999999999999984
Q ss_pred -------------cc----hhhhcccceeeeeeeccCCCC--CC------CCCccEEEEccCCCccccCceeeeeCCEEE
Q psy8787 116 -------------RG----ASVEFNLYANVRPCRSLEGYP--TL------YDDVDVVTIRENTEGEYSGIEHEIVDGVVQ 170 (364)
Q Consensus 116 -------------~g----LR~~ldlyanvRP~~~~pg~~--~~------~~~iD~vIvREnteg~Y~g~~~~~~~~~a~ 170 (364)
++ |||.||||+|+||||++||++ +| ++++|+|||||||||+|+|.++.. .+++.
T Consensus 81 P~~~~~~~~~~~~~~~~l~LRk~ldLyaNvRP~~~~pg~~~~splk~~~~~~~vD~vivREnTeG~Y~g~~~~~-~~~a~ 159 (361)
T 3udu_A 81 PKWDNLPIDQRPERASLLPLRKHFNLFANLRPCKIYESLTHASPLKNEIIQKGVDILCVRELTGGIYFGKQDLG-KESAY 159 (361)
T ss_dssp GGGTTSCGGGSHHHHHHHHHHHHHTCCEEEEEEECCGGGGGGSSBCHHHHTTCCEEEEEEECSSGGGTSCEEEC-SSEEE
T ss_pred CCcCCCCCCcCccccchHHHHHHcCCEEEEEEeeccCCccccCCCccccccCCCcEEEEcccCCCeecCccCCc-CceEE
Confidence 11 899999999999999999985 55 568999999999999999998765 67899
Q ss_pred EEEEecHHHHHHHHHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhhcCCCeeEeeEeHHHHHHHHhcCCCCc
Q psy8787 171 SIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLDTVCLNMVQDPTQY 250 (364)
Q Consensus 171 ~~~~~t~~~~eriar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp~i~~~~~~vD~~~~~lv~~P~~f 250 (364)
++++|||+++|||+|+||+||++| |+|||+|||+|||+ +++||+++|+|++++||+|+++|++||++|||||++|++|
T Consensus 160 ~~~~~Tr~~~eRIar~AFe~A~~r-rkkVT~v~KaNvl~-t~glf~~~~~eva~eypdV~~~~~~VD~~am~lv~~P~~F 237 (361)
T 3udu_A 160 DTEIYTKKEIERIARIAFESARIR-KKKVHLIDKANVLA-SSILWREVVANVAKDYQDINLEYMYVDNAAMQIVKNPSIF 237 (361)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHHT-TSEEEEEECTTTCH-HHHHHHHHHHHHGGGCTTSEEEEEEHHHHHHHHHHCGGGC
T ss_pred EEEeccHHHHHHHHHHHHHHHHHc-CCcEEEEECchhhc-cchHHHHHHHHHHHHCCCCeEEeeeHHHHHHHHHhCcccC
Confidence 999999999999999999999998 68999999999996 8999999999999999999999999999999999999999
Q ss_pred cEEEeCCCcchhhhhhhhhccCCCCcccccccCCCc-eeEeeccCCCCCccCCCCCChhHHHHHHHHHHHh-cCcHHHHH
Q psy8787 251 DVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNG-ALFESVHGTAPDIAGKDLANPTALLLSAVMMLRH-LDLNTHAD 328 (364)
Q Consensus 251 dVivt~Nl~GDIlSD~aa~l~G~lGl~psa~ig~~~-~~fEp~HGsapdiaGk~~aNP~a~ils~ammL~~-lg~~~~a~ 328 (364)
|||||+|||||||||++|+++||+||+||+|+|+++ +||||+|||||||||||+|||+|+|||++||||| ||++++|+
T Consensus 238 DViVt~NlfGDILSD~aa~l~GslGl~pSanig~~~~a~fEpvHGSAPdIAGk~iANP~A~IlS~amML~~~lg~~~~A~ 317 (361)
T 3udu_A 238 DVMLCSNLFGDILSDELAAINGSLGLLSSASLNDKGFGLYEPAGGSAPDIAHLNIANPIAQILSAALMLKYSFKEEQAAQ 317 (361)
T ss_dssp SEEEECHHHHHHHHHHHHHHHCCGGGCEEEEECTTSCEEEEESSCCCGGGTTSSCCCCHHHHHHHHHHHHHTSCCHHHHH
T ss_pred cEEEecchhHHHHHHHHHHhcCchhhcceeeeCCCCCeeeecCCCChhhhcCCCccCCHHHHHHHHHHHHHhCCCHHHHH
Confidence 999999999999999999999999999999999875 9999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHcCccccCCCCC--CCCHHHHHHHHHhC
Q psy8787 329 VIQKAALDTIKEGKYRTGDLGG--KAKCSEFTNEICSK 364 (364)
Q Consensus 329 ~i~~Av~~~~~~g~~~T~Dlgg--~~~T~e~~~av~~~ 364 (364)
+|++||.+++++|. +|+|||| .+||+||+|+|+++
T Consensus 318 ~Ie~Av~~~l~~g~-~T~DlgG~~~~~T~e~~~aV~~~ 354 (361)
T 3udu_A 318 DIENAISLALAQGK-MTKDLNAKSYLNTDEMGDCILEI 354 (361)
T ss_dssp HHHHHHHHHHHTTC-CCTTTCSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC-cCcCCCCCCccCHHHHHHHHHHH
Confidence 99999999999995 8999999 89999999999863
No 8
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1
Probab=100.00 E-value=8.2e-108 Score=796.41 Aligned_cols=316 Identities=37% Similarity=0.592 Sum_probs=305.6
Q ss_pred CCCccccCCCCcCHHHHHHHHHHHHhhc----CCCceeEEEEeeeeeecCCCCccccchhHHHHhhhcCEEEEccccc--
Q psy8787 43 QWSWRGLKVQGLGEFNLYANVRPCRSLE----GYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVCNSNYATKWFSER-- 116 (364)
Q Consensus 43 ~~~i~~i~GDGIGp~EV~a~~r~Vl~a~----g~~i~~~~vdig~~re~~~G~Y~~lp~etl~~ik~~daiLkGav~~-- 116 (364)
+++|++|||||||| ||++++++||+++ +++++|+++++|...++++|+ ++|++++++++++|++||||++.
T Consensus 1 ~~~I~vipGDGIGp-Ev~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~g~--~lp~~t~~~~~~~da~l~Gav~tP~ 77 (336)
T 1wpw_A 1 GFTVALIQGDGIGP-EIVSKSKRILAKINELYSLPIEYIEVEAGDRALARYGE--ALPKDSLKIIDKADIILKGPVGESA 77 (336)
T ss_dssp CEEEEEECCSTTHH-HHHHHHHHHHHHHHHHTTCCEEEEEECCSHHHHHHSSS--SSCHHHHHHHHTCSEEEECCCCTTH
T ss_pred CcEEEEECCCCcCH-HHHHHHHHHHHHHHHhhCCCeEEEEEecchHHHHhhCC--cCCHHHHHHHHHCCEEEECCcCCCC
Confidence 36799999999999 9999999999998 899999999999988889997 89999999999999999999962
Q ss_pred --c---hhhhcccceeeeeeeccCCCCCCCCCccEEEEccCCCccccCceeeeeCCEEEEEEEecHHHHHHHHHHHHHHH
Q psy8787 117 --G---ASVEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLITEEASSRVAEFAFEYA 191 (364)
Q Consensus 117 --g---LR~~ldlyanvRP~~~~pg~~~~~~~iD~vIvREnteg~Y~g~~~~~~~~~a~~~~~~t~~~~eriar~Af~~A 191 (364)
. ||+.||||+|+||||++||+++|++++|+|||||||||+|+|.++...++++.+++++||++++||+|+||+||
T Consensus 78 ~~~~l~lR~~ldlyan~RP~~~~pg~~~~~~~~D~vivREnteg~Y~g~~~~~~~~va~~~~~~T~~~~eRiar~AF~~A 157 (336)
T 1wpw_A 78 ADVVVKLRQIYDMYANIRPAKSIPGIDTKYGNVDILIVRENTEDLYKGFEHIVSDGVAVGMKIITRFASERIAKVGLNFA 157 (336)
T ss_dssp HHHHHHHHHTTTCCEEEEEEECCTTTCCSCSCCEEEEEEECSSBTTTCCEEEEETTEEEEEEEEEHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHhCCEEEEEEEeccCCCCCCCCCCcEEEEecCccCeEcCCccccCCCeEEEEEEecHHHHHHHHHHHHHHH
Confidence 2 99999999999999999999999999999999999999999999887889999999999999999999999999
Q ss_pred HhCCCCceEEEEeCcccccccHHHHHHHHHHhhcCCCeeEeeEeHHHHHHHHhcCCCCccEEEeCCCcchhhhhhhhhcc
Q psy8787 192 KTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLV 271 (364)
Q Consensus 192 ~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp~i~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~GDIlSD~aa~l~ 271 (364)
++| |+|||+|||+|||+.|||+|+++|+|++++ +|+++|++||+||||||++|++||||||+|||||||||++|+++
T Consensus 158 ~~r-rkkvt~v~KaNvlk~t~glf~~~~~eva~~--~I~~~~~~vD~~~~~lv~~P~~FDVivt~NlfGDIlSD~aa~l~ 234 (336)
T 1wpw_A 158 LRR-RKKVTCVHKANVMRITDGLFAEACRSVLKG--KVEYSEMYVDAAAANLVRNPQMFDVIVTENVYGDILSDEASQIA 234 (336)
T ss_dssp HTT-TSEEEEEECTTTCTTHHHHHHHHHHHHHTT--TSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHH
T ss_pred HHh-CCeEEEEECCcchhhhhHHHHHHHHHHHHh--CceeEEEeHHHHHHHHhhCcccceEEEEcCcchHHHHHHHHHhc
Confidence 998 789999999999999999999999999998 99999999999999999999999999999999999999999999
Q ss_pred CCCCcccccccCCCceeEeeccCCCCCccCCCCCChhHHHHHHHHHHHhcCc-------HHHHHHHHHHHHHHHHcCccc
Q psy8787 272 GGLGLTPSGNIGLNGALFESVHGTAPDIAGKDLANPTALLLSAVMMLRHLDL-------NTHADVIQKAALDTIKEGKYR 344 (364)
Q Consensus 272 G~lGl~psa~ig~~~~~fEp~HGsapdiaGk~~aNP~a~ils~ammL~~lg~-------~~~a~~i~~Av~~~~~~g~~~ 344 (364)
||+||+||+|+|++++||||+|||||||||||+|||+|+|||++|||||||+ +++|++|++||.+++++|+++
T Consensus 235 GslGl~pSanig~~~a~fEp~HGSApdiaGk~iANP~A~IlS~ammL~~lg~~d~~~~~~~~A~~Ie~Av~~~l~~g~~~ 314 (336)
T 1wpw_A 235 GSLGIAPSANIGDKKALFEPVHGAAFDIAGKNIGNPTAFLLSVSMMYERMYELSNDDRYIKASRALENAIYLVYKERKAL 314 (336)
T ss_dssp TCGGGCEEEEECSSCEEEEESSCCCTTTTTSSCCCTHHHHHHHHHHHHHHHHTTCCTHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred CCccccceEEECCCCceEeCCCCCchhhCCCCCcCcHHHHHHHHHHHHHcCccccccchHHHHHHHHHHHHHHHHcCCcc
Confidence 9999999999999999999999999999999999999999999999999999 999999999999999999769
Q ss_pred cCCCCCCCCHHHHHHHHHhC
Q psy8787 345 TGDLGGKAKCSEFTNEICSK 364 (364)
Q Consensus 345 T~Dlgg~~~T~e~~~av~~~ 364 (364)
|+||||++||+||+|+|+++
T Consensus 315 T~DlgG~~~T~e~~dav~~~ 334 (336)
T 1wpw_A 315 TPDVGGNATTDDLINEIYNK 334 (336)
T ss_dssp CGGGTCCCCHHHHHHHHHHS
T ss_pred CCccCCCCCHHHHHHHHHHh
Confidence 99999999999999999975
No 9
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A
Probab=100.00 E-value=7.6e-108 Score=806.55 Aligned_cols=317 Identities=32% Similarity=0.485 Sum_probs=294.2
Q ss_pred CCCCccccCCCCcCHHHHHHHHHHHHhhc----CCCceeEEEEeeeeeecCCCCccccchhHHHHhhhcCEEEEcccc--
Q psy8787 42 SQWSWRGLKVQGLGEFNLYANVRPCRSLE----GYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVCNSNYATKWFSE-- 115 (364)
Q Consensus 42 ~~~~i~~i~GDGIGp~EV~a~~r~Vl~a~----g~~i~~~~vdig~~re~~~G~Y~~lp~etl~~ik~~daiLkGav~-- 115 (364)
+.++|++|||||||| ||++++++||+++ +++++|+++++|..+++++|+ ++|++++++|+++|++||||++
T Consensus 22 M~~~I~vipGDGIGp-EV~~~a~~Vl~a~~~~~g~~~~~~~~~~G~~~~~~~G~--~lp~~tl~~~~~~daiL~Gavg~P 98 (390)
T 3u1h_A 22 MKKKIAVLPGDGIGP-EVMEAAIEVLKAVAERFGHEFEFEYGLIGGAAIDEAGT--PLPEETLDVCRGSDAILLGAVGGP 98 (390)
T ss_dssp --CEEEEEEESTTHH-HHHHHHHHHHHHHHHHHSCCCEEEECCCTHHHHHSSSS--SSCHHHHHHHHTSSEEEEEECCCS
T ss_pred ccceEEEECCCccCH-HHHHHHHHHHHHHHHhcCCCeEEEEEEcCHHHHHhhCC--cCCHHHHHHHHHCCEEEECCcCCC
Confidence 468999999999999 9999999999997 899999999999988889997 8999999999999999999994
Q ss_pred ------------cc---hhhhcccceeeeeeeccCCCC--CCC-----CCccEEEEccCCCccccCceeeee---CCEEE
Q psy8787 116 ------------RG---ASVEFNLYANVRPCRSLEGYP--TLY-----DDVDVVTIRENTEGEYSGIEHEIV---DGVVQ 170 (364)
Q Consensus 116 ------------~g---LR~~ldlyanvRP~~~~pg~~--~~~-----~~iD~vIvREnteg~Y~g~~~~~~---~~~a~ 170 (364)
++ |||.||||+|+||||++||++ +|+ +++|+|||||||||+|+|++++.. .+++.
T Consensus 99 ~~~~~~~~~~~~~~ll~LRk~ldLyANvRP~k~~pg~~~~splk~~~~~~vD~vIVREnTeG~Y~g~~~~~~~~g~~~a~ 178 (390)
T 3u1h_A 99 KWDQNPSELRPEKGLLGIRKGLDLFANLRPVKVYDSLADASPLKKEVIEGVDLVIVRELTGGLYFGEPSERYEEGEEAAV 178 (390)
T ss_dssp TTTSSCCSSSSSCCHHHHHHHTTEEEEEEEEECCGGGTTSSSBCHHHHSSCEEEEEEECSSBSCC-------CTTCSEEE
T ss_pred CcCCCCcccCccchHHHHHHHhCCeEEEEEeeccCCccccCCcccccccCCcEEEEeeCCCCeecCccccccCCCCceEE
Confidence 11 899999999999999999997 776 689999999999999999988752 34789
Q ss_pred EEEEecHHHHHHHHHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhhcCCCeeEeeEeHHHHHHHHhcCCCCc
Q psy8787 171 SIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLDTVCLNMVQDPTQY 250 (364)
Q Consensus 171 ~~~~~t~~~~eriar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp~i~~~~~~vD~~~~~lv~~P~~f 250 (364)
++++|||+++|||+|+||++|++| |+|||+|||+||| .+|+||+++|+|++++||+|+++|++||++|||||++|++|
T Consensus 179 ~~~~~Tr~~~eRIar~AFe~A~~r-rkkVT~v~KaNVl-~t~glfr~~~~eva~eYPdV~~~~~~VD~~amqLV~~P~~F 256 (390)
T 3u1h_A 179 DTLLYTREEIERIIRKAFELALTR-KKKVTSVDKANVL-ESSRLWREVAEEVAKEYPDVELEHMLVDNAAMQLIRNPRQF 256 (390)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHTT-TSEEEEEECTTTC-HHHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGC
T ss_pred EEEEecHHHHhHHHHHHHHHHHHc-CCceEEEECCccc-ccchHHHHHHHHHHhHCCCCeEEeeeHHHHHHHHHhCcccC
Confidence 999999999999999999999998 6899999999999 68999999999999999999999999999999999999999
Q ss_pred cEEEeCCCcchhhhhhhhhccCCCCcccccccCCC-ceeEeeccCCCCCccCCCCCChhHHHHHHHHHHHh-cCcHHHHH
Q psy8787 251 DVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLN-GALFESVHGTAPDIAGKDLANPTALLLSAVMMLRH-LDLNTHAD 328 (364)
Q Consensus 251 dVivt~Nl~GDIlSD~aa~l~G~lGl~psa~ig~~-~~~fEp~HGsapdiaGk~~aNP~a~ils~ammL~~-lg~~~~a~ 328 (364)
|||||+|||||||||++|+++||+||+||+|+|++ .+||||+|||||||||||+|||+|+|||++||||| ||++++|+
T Consensus 257 DViVt~NlfGDILSD~aA~l~GslGl~pSanig~~~~a~fEpvHGSAPDIAGk~iANP~A~IlS~amML~~~lg~~~~A~ 336 (390)
T 3u1h_A 257 DVIVTENMFGDILSDEASMITGSLGMLPSASLSTDGLGLYEPVHGSAPDIAGKGIANPLATILSAAMMLRYSFGLEEEAK 336 (390)
T ss_dssp SEEEECHHHHHHHHHHHHHHHSCTTTCEEEEEETTSCEEEEESSCCCTTTTTSSCSCTHHHHHHHHHHHHHHHCCHHHHH
T ss_pred cEEEecccchHHHHHHHHHhcCchhhcceeeecCCCCeeEecCCCChhhhcCCCcCCcHHHHHHHHHHHHHhCCCHHHHH
Confidence 99999999999999999999999999999999985 69999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHcCccccCCC--CC--CCCHHHHHHHHHhC
Q psy8787 329 VIQKAALDTIKEGKYRTGDL--GG--KAKCSEFTNEICSK 364 (364)
Q Consensus 329 ~i~~Av~~~~~~g~~~T~Dl--gg--~~~T~e~~~av~~~ 364 (364)
+|++||.+++++|. +|+|| || .+||+||+|+|+++
T Consensus 337 ~Ie~AV~~vl~~G~-~T~Dl~~gG~~~~~T~e~~daV~~~ 375 (390)
T 3u1h_A 337 AIEKAVEKVLAEGY-RTADIAKPGGKYVSTTEMTDEVKAA 375 (390)
T ss_dssp HHHHHHHHHHHHTC-CBTTTSCSSCCCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC-cChhhccCCCCccCHHHHHHHHHHH
Confidence 99999999999995 89999 66 89999999999863
No 10
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus}
Probab=100.00 E-value=5.3e-107 Score=818.23 Aligned_cols=333 Identities=36% Similarity=0.562 Sum_probs=316.9
Q ss_pred cccccceeEeeccchhhhcccccCCCCCCCCccccCCCCcCHHHHHHHHHHHHhhcCCCceeEEEEeeeeeecCCC-Ccc
Q psy8787 15 QCNTVETISYLTLSELISAQYINTPSISQWSWRGLKVQGLGEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEG-EYS 93 (364)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~i~GDGIGp~EV~a~~r~Vl~a~g~~i~~~~vdig~~re~~~G-~Y~ 93 (364)
+-++++||++.+ .+.++|++|||||||| ||++++++|+++++++++|+++++|...++++| +
T Consensus 5 ~~~~~~~i~~~~--------------~g~~~IavipGDGIGp-EV~~~a~~VL~a~~~~ie~~~~~~G~~~~~~~G~~-- 67 (496)
T 2d1c_A 5 TTETGKKMHVLE--------------DGRKLITVIPGDGIGP-ECVEATLKVLEAAKAPLAYEVREAGASVFRRGIAS-- 67 (496)
T ss_dssp ECTTSCEEEECT--------------TSCEEEEEECCSTTHH-HHHHHHHHHHHHTTCCEEEEECCCSHHHHTTTCTT--
T ss_pred ccCCCceeEecc--------------CCCEEEEEEcCCCCCH-HHHHHHHHHHHhcCCCeEEEEEecCHHHHhccCCC--
Confidence 345588888422 2357899999999999 999999999999999999999999999888999 7
Q ss_pred ccchhHHHHhhhcCEEEEccccc-------c----hhhhcccceeeeeeeccCCCCCCC--CCccEEEEccCCCccccCc
Q psy8787 94 GIEHEIVDGVCNSNYATKWFSER-------G----ASVEFNLYANVRPCRSLEGYPTLY--DDVDVVTIRENTEGEYSGI 160 (364)
Q Consensus 94 ~lp~etl~~ik~~daiLkGav~~-------g----LR~~ldlyanvRP~~~~pg~~~~~--~~iD~vIvREnteg~Y~g~ 160 (364)
++|++++++++++|++||||++. + ||+.||||+|+||||++||+++|+ +++|+|||||||||+|+|+
T Consensus 68 ~lp~etle~ik~~daiLkGavgtP~~~~~~s~~l~LRk~LdLyaNlRP~k~~pgl~splk~~~vD~vIVREnTEG~Y~G~ 147 (496)
T 2d1c_A 68 GVPQETIESIRKTRVVLKGPLETPVGYGEKSANVTLRKLFETYANVRPVREFPNVPTPYAGRGIDLVVVRENVEDLYAGI 147 (496)
T ss_dssp SCCHHHHHHHHHHCEEEECCCCCCSSSSSCCHHHHHHHHTTCCEEEEEEECBTTBCCTTTTSCCEEEEEEECSSBGGGCC
T ss_pred cCcHHHHHHHHHCCEEEECCccCCCcccccChHHHHHHHhCCEEEEEEEeecCCCCccccCCCccEEEEeeCcCceEece
Confidence 89999999999999999999951 1 999999999999999999999998 7999999999999999999
Q ss_pred eeeeeCCEEEEEEEecHHHHHHHHHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhhcCCCeeEeeEeHHHHH
Q psy8787 161 EHEIVDGVVQSIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLDTVC 240 (364)
Q Consensus 161 ~~~~~~~~a~~~~~~t~~~~eriar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp~i~~~~~~vD~~~ 240 (364)
+++..++++.+++++||++++||+|+||+||++|+|+|||+|||+|||+.|||+|+++|+|++++||+|+++|++||+||
T Consensus 148 e~~~~~~va~~~~v~Tr~~ieRIar~AFe~A~~r~rkkVT~V~KaNVlk~sdGlfr~v~~eVa~eYPdI~~e~~~VD~~a 227 (496)
T 2d1c_A 148 EHMQTPSVAQTLKLISWKGSEKIVRFAFELARAEGRKKVHCATKSNIMKLAEGTLKRAFEQVAQEYPDIEAVHIIVDNAA 227 (496)
T ss_dssp EEEEETTEEEEEEEEEHHHHHHHHHHHHHHHHHTTCCEEEEEECTTTCTTHHHHHHHHHHHHHTTCTTSEEEEEEHHHHH
T ss_pred eEecCCCeEEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECCCchhhHHHHHHHHHHHHHHHCCCceEEEEeHHHHH
Confidence 98888899999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCccEEEeCCCcchhhhhhhhhccCCCCcccccccCCCceeEeeccCCCCCccCCCCCChhHHHHHHHHHHHh
Q psy8787 241 LNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGTAPDIAGKDLANPTALLLSAVMMLRH 320 (364)
Q Consensus 241 ~~lv~~P~~fdVivt~Nl~GDIlSD~aa~l~G~lGl~psa~ig~~~~~fEp~HGsapdiaGk~~aNP~a~ils~ammL~~ 320 (364)
||||++|++||||||+|||||||||++|+++||+||+||+|+|++++||||+|||||||||||+|||+|+|||++|||||
T Consensus 228 mqLV~~P~~FDVIVt~NLfGDILSDlaA~l~GslGlapSanig~~~a~FEpvHGSAPDIAGk~iANP~A~IlSaamML~h 307 (496)
T 2d1c_A 228 HQLVKRPEQFEVIVTTNMNGDILSDLTSGLIGGLGFAPSANIGNEVAIFEAVHGSAPKYAGKNVINPTAVLLSAVMMLRY 307 (496)
T ss_dssp HHHHHCGGGCSEEEECHHHHHHHHHHHHTTTTCGGGCEEEEECSSCEEEEESSCCCTTTTTSSCCCCHHHHHHHHHHHHH
T ss_pred HHHhhCcCcceEEEECCcchHHHHHHHHHhcCCcccCcEEEECCCCceeeCCCCchhhhcCCCccCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHHHHHHHcCccccCCCCC---CCCHHHHHHHHHhC
Q psy8787 321 LDLNTHADVIQKAALDTIKEGKYRTGDLGG---KAKCSEFTNEICSK 364 (364)
Q Consensus 321 lg~~~~a~~i~~Av~~~~~~g~~~T~Dlgg---~~~T~e~~~av~~~ 364 (364)
||+.++|++|++||.+++++|+++|+|||| ++||+||+|+|+++
T Consensus 308 lG~~~~A~~Ie~AV~~vl~~G~~~T~DLgg~~~~~sT~e~~daV~~~ 354 (496)
T 2d1c_A 308 LEEFATADLIENALLYTLEEGRVLTGDVVGYDRGAKTTEYTEAIIQN 354 (496)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTSSCBHHHHCTTTCBCHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHcCCeeccccCCCCCCcCHHHHHHHHHHH
Confidence 999999999999999999999779999998 89999999999874
No 11
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A
Probab=100.00 E-value=1.3e-107 Score=800.58 Aligned_cols=315 Identities=31% Similarity=0.492 Sum_probs=300.2
Q ss_pred CCCccccCCCCcCHHHHHHHHHHHHhhc----CCCceeEEEEeeeeeecCCCCccccchhHHHHhhhcCEEEEcccc--c
Q psy8787 43 QWSWRGLKVQGLGEFNLYANVRPCRSLE----GYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVCNSNYATKWFSE--R 116 (364)
Q Consensus 43 ~~~i~~i~GDGIGp~EV~a~~r~Vl~a~----g~~i~~~~vdig~~re~~~G~Y~~lp~etl~~ik~~daiLkGav~--~ 116 (364)
.++|++|||||||| ||++++++||+++ +++++|+++++|...++++|+ ++|++++++++++|++||||++ .
T Consensus 3 ~~~I~vipGDGIGp-Ev~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~g~--~lp~~tl~~~~~~da~l~Gavg~P~ 79 (359)
T 2y3z_A 3 SMKVAVLPGDGIGP-EVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGE--PFPEPTRKGVEEAEAVLLGSVGGPK 79 (359)
T ss_dssp CEEEEEECCSTTHH-HHHHHHHHHHHHHHHHHTCCEEEEECCCTHHHHHHHSS--SSCHHHHHHHHHSSEEEECCCCCGG
T ss_pred ccEEEEECCCCcCH-HHHHHHHHHHHHHHHhcCCCeEEEEEeccHHHHHhhCC--cCCHHHHHHHHHCCEEEEccccCCc
Confidence 47899999999999 9999999999997 689999999999988889997 8999999999999999999994 1
Q ss_pred ------------c---hhhhcccceeeeeeeccCCCC--CCC-----CCccEEEEccCCCccccCceeeeeCCEEEEEEE
Q psy8787 117 ------------G---ASVEFNLYANVRPCRSLEGYP--TLY-----DDVDVVTIRENTEGEYSGIEHEIVDGVVQSIKL 174 (364)
Q Consensus 117 ------------g---LR~~ldlyanvRP~~~~pg~~--~~~-----~~iD~vIvREnteg~Y~g~~~~~~~~~a~~~~~ 174 (364)
+ ||+.||||+|+||||++||+. +|+ +++|+|||||||||+|+|.++....+++.++++
T Consensus 80 ~~~~~~~~~~~~~~l~LR~~ldlyanvRP~~~~pgl~~~splk~~~~~~iD~vivREnteg~Y~g~e~~~~~~~a~~~~~ 159 (359)
T 2y3z_A 80 WDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEIARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTER 159 (359)
T ss_dssp GTTSCGGGCHHHHHHHHHHHTTEEEEEEEEECCTTCGGGSSSCHHHHTTCEEEEEEECSCSTTTCSSCEECSSCEECCCC
T ss_pred cccCCcccccchhHHHHHHHhCCEEEEEEeeccCCCCCCCCcccccCCCceEEEEecCccceEecCCCcCCCceEEEEEE
Confidence 1 999999999999999999983 564 579999999999999999987666678999999
Q ss_pred ecHHHHHHHHHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhhcCCCeeEeeEeHHHHHHHHhcCCCCccEEE
Q psy8787 175 ITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLDTVCLNMVQDPTQYDVLV 254 (364)
Q Consensus 175 ~t~~~~eriar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp~i~~~~~~vD~~~~~lv~~P~~fdViv 254 (364)
+||++++||+|+||+||++| |+|||+|||+|||+ +++||+++|+|++++||+|+++|++||+||||||++|++|||||
T Consensus 160 ~T~~~~eRIar~AFe~A~~r-rkkVt~v~KaNvlk-~~~lf~~~~~eva~eypdI~~~~~~VD~~~mqlv~~P~~FDViv 237 (359)
T 2y3z_A 160 YSKPEVERVARVAFEAARKR-RKHVVSVDKANVLE-VGEFWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVV 237 (359)
T ss_dssp CCHHHHHHHHHHHHHHHHTT-TSEEEEEECTTTCH-HHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGCSEEE
T ss_pred EcHHHHHHHHHHHHHHHHHc-CCeEEEEECCcccc-ccHHHHHHHHHHHHHCCcEEEEeeEHHHHHHHHhhCcccccEEE
Confidence 99999999999999999998 68999999999999 89999999999999999999999999999999999999999999
Q ss_pred eCCCcchhhhhhhhhccCCCCcccccccCCCceeEeeccCCCCCccCCCCCChhHHHHHHHHHHHh-cCcHHHHHHHHHH
Q psy8787 255 MPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGTAPDIAGKDLANPTALLLSAVMMLRH-LDLNTHADVIQKA 333 (364)
Q Consensus 255 t~Nl~GDIlSD~aa~l~G~lGl~psa~ig~~~~~fEp~HGsapdiaGk~~aNP~a~ils~ammL~~-lg~~~~a~~i~~A 333 (364)
|+|||||||||++|+++||+||+||+|+|++++||||+|||||||||||+|||+|+|||++||||| ||+.++|++|++|
T Consensus 238 t~NlfGDILSD~aa~l~GslGl~pSanig~~~~~fEpvHGSAPdiAGk~iANP~A~IlS~ammL~~slg~~~~A~~Ie~A 317 (359)
T 2y3z_A 238 TGNIFGDILSDLASVLPGSLGLLPSASLGRGTPVFEPVHGSAPDIAGKGIANPTAAILSAAMMLEHAFGLVELARKVEDA 317 (359)
T ss_dssp ECHHHHHHHHHHHHTTTSCGGGCEEEEEESSCCEEEESSCCCGGGTTSSCSCTHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred EcCcchHHHHHHHHHhcCcccccceeEeCCCCceeecCCCChhhhCCCCCcCCHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 999999999999999999999999999999889999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHcCccccCCCCCCCCHHHHHHHHHhC
Q psy8787 334 ALDTIKEGKYRTGDLGGKAKCSEFTNEICSK 364 (364)
Q Consensus 334 v~~~~~~g~~~T~Dlgg~~~T~e~~~av~~~ 364 (364)
|.+++++| +|+||||++||+||+|+|+++
T Consensus 318 v~~~l~~g--~T~Dlgg~~~T~e~~daV~~~ 346 (359)
T 2y3z_A 318 VAKALLET--PPPDLGGSAGTEAFTATVLRH 346 (359)
T ss_dssp HHHHHHHS--CCGGGTCCCCHHHHHHHHHHH
T ss_pred HHHHHHcC--CCCccCCCCCHHHHHHHHHHH
Confidence 99999999 799999999999999999863
No 12
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural genomics center for infectious ssgcid, glyoxylate bypass, manganese; 1.65A {Burkholderia pseudomallei} SCOP: c.77.1.1 PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4aj3_A* 4aja_A* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A ...
Probab=100.00 E-value=1.6e-107 Score=816.50 Aligned_cols=338 Identities=29% Similarity=0.398 Sum_probs=312.6
Q ss_pred cccceeEeeccchhhhcccccCCCCCCCCccccCCCCcCHHHHHHHHHHHHhhc-------CCCceeEEEEeeeeeecCC
Q psy8787 17 NTVETISYLTLSELISAQYINTPSISQWSWRGLKVQGLGEFNLYANVRPCRSLE-------GYPTLYDDVDVVTIRENTE 89 (364)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~i~GDGIGp~EV~a~~r~Vl~a~-------g~~i~~~~vdig~~re~~~ 89 (364)
.+++||+|...+.++ + | ..|+|++|||||||| ||++++++||+++ +++++|+++++|..+++++
T Consensus 18 ~~~~~~~~~~~~~~~---v---p--~~~~I~vipGDGIGp-EV~~~a~~Vl~aa~~~~~~~~~~i~~~~~~~G~~a~~~~ 88 (427)
T 3dms_A 18 EGGDKITVNKDFSLN---V---S--DQPIIPYIEGDGTGF-DITPVMIKVVDAAVEKAYGGKKKIHWMEIYAGEKATKVY 88 (427)
T ss_dssp TTSBCCEECTTSCEE---C---C--SSBEEEEECCSTTHH-HHHHHHHHHHHHHHHHHHTTSCCCEEEEECCTHHHHHHH
T ss_pred CCCCeEEEcCCCcEe---C---C--CCCEEEEECCCcccH-HHHHHHHHHHHHHHHHhcCCCCceEEEEEeCCHHHHHhc
Confidence 468999997666543 3 4 778999999999999 9999999999985 3799999999999888888
Q ss_pred CCccccchhHHHHhhhcCEEEEcccc----c---c----hhhhcccceeeeeeeccCCCCCCC---CCccEEEEccCCCc
Q psy8787 90 GEYSGIEHEIVDGVCNSNYATKWFSE----R---G----ASVEFNLYANVRPCRSLEGYPTLY---DDVDVVTIRENTEG 155 (364)
Q Consensus 90 G~Y~~lp~etl~~ik~~daiLkGav~----~---g----LR~~ldlyanvRP~~~~pg~~~~~---~~iD~vIvREnteg 155 (364)
|+..++|++++++|+++|++||||++ . . ||+.||||+|+||||++||+++|+ +++|+|||||||||
T Consensus 89 G~~~~lp~etl~~~k~~da~l~G~~~tP~~~~~~s~~l~LRk~LdLyaNlRPv~~~pg~~splk~~~~vDivIvREnTeG 168 (427)
T 3dms_A 89 GPDVWLPEETLQVLKEYVVSIKGPLTTPVGGGIRSLNVALRQELDLYVCLRPIQYFKGVPSPVREPEKTNMVIFRENSED 168 (427)
T ss_dssp CTTCSSCHHHHHHHHHTCEEEECCCCCCC----CCHHHHHHHHTTCCEEEEEECCCTTCCCSSSCGGGCCEEEEEECSSG
T ss_pred CCCCCCCHHHHHHHHhcCEEEECCCCCCCCcccCChhHHHHHHhCCeEEEEEeecCCCCCCCCCCCCCceEEEEEECCCC
Confidence 85337999999999999999999984 1 1 999999999999999999999887 47999999999999
Q ss_pred cccCceeeee-----------------------CCEEEEEEEecHHHHHHHHHHHHHHHHhCCCCceEEEEeCccccccc
Q psy8787 156 EYSGIEHEIV-----------------------DGVVQSIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSD 212 (364)
Q Consensus 156 ~Y~g~~~~~~-----------------------~~~a~~~~~~t~~~~eriar~Af~~A~~~~~~~Vt~v~KaNv~~~~~ 212 (364)
+|+|++++.. ++++.++++|||++++||+|+||+||++|+|+|||+|||+|||+.||
T Consensus 169 ~Y~G~e~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~Tr~~~eRIar~AFe~A~~r~rkkVT~V~KaNVlk~td 248 (427)
T 3dms_A 169 IYAGIEWAAESEQAKKVIKFLQEEMGVKKIRFPQTSGIGIKPVSKEGTERLVRKAIQYAIDNDRKSVTLVHKGNIMKFTE 248 (427)
T ss_dssp GGGCCEECTTCHHHHHHHHHHHHTSCCCCCSCGGGCCEECCCCCHHHHHHHHHHHHHHHHHTTCSEEEEEECTTTSTTTH
T ss_pred EecCcccccCCcccccccccccccccccccccCCcceEEEEEecHHHHHHHHHHHHHHHHhcCCCeEEEEECCccchhhh
Confidence 9999986531 24678999999999999999999999999888999999999999999
Q ss_pred HHHHHHHHHHhh-cCCC-------------------eeEeeEeHHHHHHHHhcCCCCccEEEeCCCcchhhhhhhhhccC
Q psy8787 213 GLFLRCCRDAAE-KFPE-------------------VKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVG 272 (364)
Q Consensus 213 ~lf~~~~~~va~-~yp~-------------------i~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~GDIlSD~aa~l~G 272 (364)
|||+++|+|+++ +||+ |+++|++||+||||||++|++||||||+|||||||||++|+++|
T Consensus 249 glfr~~~~eva~~eypdv~~~~~~~~~~~~~~~~~~V~~~~~~VD~~amqlv~~P~~FDViVt~NlfGDILSD~aA~l~G 328 (427)
T 3dms_A 249 GAFRDAGYALAQKEFGAELIDGGPWMKFKNPKTGNEIVVKDSIADAFLQQILLRPAEYDVIATLNLNGDYISDALAAQVG 328 (427)
T ss_dssp HHHHHHHHHHHHHHHCCEESTTSSCEEEECTTTCCEEEEEEEEHHHHHHHHHHCGGGCCEEEECHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCccccccccccccccccccCceEEEEeeHHHHHHHHhhCcccceEEEEcccccHHHHHHHHHhcC
Confidence 999999999997 7985 88999999999999999999999999999999999999999999
Q ss_pred CCCcccccccCCCceeEeeccCCCCCccCCCCCChhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHcCccccCCCCC--
Q psy8787 273 GLGLTPSGNIGLNGALFESVHGTAPDIAGKDLANPTALLLSAVMMLRHLDLNTHADVIQKAALDTIKEGKYRTGDLGG-- 350 (364)
Q Consensus 273 ~lGl~psa~ig~~~~~fEp~HGsapdiaGk~~aNP~a~ils~ammL~~lg~~~~a~~i~~Av~~~~~~g~~~T~Dlgg-- 350 (364)
|+||+||+|+|++++||||+|||||||||||+|||+|+|||++|||||||+.++|++|++||.+||++|+ +|+||||
T Consensus 329 slGl~pSanig~~~a~fEpvHGSAPdIAGk~iANP~A~IlS~amML~~lg~~~~A~~Ie~AV~~vl~~G~-~T~Dlgg~~ 407 (427)
T 3dms_A 329 GIGIAPGANLSDSVAMFEATHGTAPKYAGKDYVNPGSEILSAEMMLRHLGWTEAADVIISAMEKSIKQKR-VTYDFARLM 407 (427)
T ss_dssp CTTTCEEEEECSSCEEEEECSCCCGGGTTSSCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTE-ECHHHHTTS
T ss_pred CccccceeeeCCCcceEEeccCChhhhcCCCcCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCC-cchhhcccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999996 7999976
Q ss_pred ----CCCHHHHHHHHHhC
Q psy8787 351 ----KAKCSEFTNEICSK 364 (364)
Q Consensus 351 ----~~~T~e~~~av~~~ 364 (364)
.+||+||+|+|+++
T Consensus 408 ~g~~~~~T~e~~daV~~~ 425 (427)
T 3dms_A 408 EGATQVSCSGFGQVLIEN 425 (427)
T ss_dssp SSCEECCHHHHHHHHHHT
T ss_pred CCCCccCHHHHHHHHHHh
Confidence 58999999999975
No 13
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A*
Probab=100.00 E-value=4.9e-107 Score=799.73 Aligned_cols=317 Identities=29% Similarity=0.460 Sum_probs=299.2
Q ss_pred CCCCccccCCCCcCHHHHHHHHHHHHhhc----CCCceeEEEEeeeeeecCCCCccccchhHHHHhhhcCEEEEcccc--
Q psy8787 42 SQWSWRGLKVQGLGEFNLYANVRPCRSLE----GYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVCNSNYATKWFSE-- 115 (364)
Q Consensus 42 ~~~~i~~i~GDGIGp~EV~a~~r~Vl~a~----g~~i~~~~vdig~~re~~~G~Y~~lp~etl~~ik~~daiLkGav~-- 115 (364)
+.|+|++|||||||| ||++++++||+++ +++++|+++++|..+++++|+ ++|++++++|+++|++||||++
T Consensus 12 ~~~~I~vipGDGIGp-EV~~~a~~Vl~a~~~~~g~~~~~~~~~~G~~~~~~~G~--~lp~etl~~~~~~da~L~Gavg~P 88 (375)
T 3vmk_A 12 SSYQIAVLAGDGIGP-EVMAEARKVLAAVEKRFDLSIEYSEYDVGGAAIDNHGC--PLPEATLKGCEAADAVLFGSVGGP 88 (375)
T ss_dssp SCEEEEEEEESTTHH-HHHHHHHHHHHHHHHHTTCCEEEEECCCTHHHHHHHSS--SSCHHHHHHHHTSSEEEEEECCCG
T ss_pred CcceEEEECCCcccH-HHHHHHHHHHHHHHHhcCCCEEEEEEECCHHHHHhhCC--cCCHHHHHHHHHCCeEEECCcCCC
Confidence 568899999999999 9999999999986 689999999999988889997 8999999999999999999984
Q ss_pred ------------cc----hhhhcccceeeeeeeccCCCC--CC------CCCccEEEEccCCCccccCceeeee----CC
Q psy8787 116 ------------RG----ASVEFNLYANVRPCRSLEGYP--TL------YDDVDVVTIRENTEGEYSGIEHEIV----DG 167 (364)
Q Consensus 116 ------------~g----LR~~ldlyanvRP~~~~pg~~--~~------~~~iD~vIvREnteg~Y~g~~~~~~----~~ 167 (364)
++ |||.||||+|+||||++||++ +| ++++|+|||||||||+|+|+++... ++
T Consensus 89 ~~~~~~~~~~~~~~~~l~LRk~ldLyaNvRP~~~~pg~~~~splk~~~~~~~vD~vIvREnTeG~Y~g~~~~~~~~~~~~ 168 (375)
T 3vmk_A 89 KWEHLPPNDQPERGALLPLRGHFELFCNMRPAKLHPGLEHMSPLRSDISEKGFDILCVRELTGGIYFGKPKGRQGEGENE 168 (375)
T ss_dssp GGTTSCSTTSHHHHHHHHHHHHTTCCEEEEEEECCTTCGGGSSBCHHHHTTCCEEEEEEECSSBTTTCSSCEEECCGGGC
T ss_pred CccCCCccccccccchHHHHHHcCCeEEEEEEeccCCCcccCCCCcccccCCCCEEEEeeCCCCEecCCccccccCCCCc
Confidence 11 899999999999999999995 55 4789999999999999999987642 45
Q ss_pred EEEEEEEecHHHHHHHHHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhhcCCCeeEeeEeHHHHHHHHhcCC
Q psy8787 168 VVQSIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLDTVCLNMVQDP 247 (364)
Q Consensus 168 ~a~~~~~~t~~~~eriar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp~i~~~~~~vD~~~~~lv~~P 247 (364)
++.++++|||+++|||+|+||+||++| |+|||+|||+|||+ +++||+++|+|++++||+|+++|++||++|||||++|
T Consensus 169 ~a~~~~~~Tr~~~eRIar~AFe~A~~r-rkkVT~v~KaNvl~-~~glf~~~~~eva~eypdV~~~~~~VD~~am~lv~~P 246 (375)
T 3vmk_A 169 EAFDTMRYSRKEIRRIAKIAFESAQGR-RKKVTSVDKANVLA-CSVLWREVVEEVAKDYPDVELEHIYIDNATMQLLRRP 246 (375)
T ss_dssp EEEEEEEEEHHHHHHHHHHHHHHHHTT-TSEEEEEECTTTCH-HHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCG
T ss_pred eEEEEEEEcHHHHHHHHHHHHHHHHHc-CCcEEEEECchhhh-hhhHHHHHHHHHHHHCCCceEeeeeHHHHHHHHHhCc
Confidence 899999999999999999999999998 68999999999998 5699999999999999999999999999999999999
Q ss_pred CCccEEEeCCCcchhhhhhhhhccCCCCcccccccCCCc-eeEeeccCCCCCccCCCCCChhHHHHHHHHHHHh-cCcHH
Q psy8787 248 TQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNG-ALFESVHGTAPDIAGKDLANPTALLLSAVMMLRH-LDLNT 325 (364)
Q Consensus 248 ~~fdVivt~Nl~GDIlSD~aa~l~G~lGl~psa~ig~~~-~~fEp~HGsapdiaGk~~aNP~a~ils~ammL~~-lg~~~ 325 (364)
++||||||+|||||||||++|+++||+||+||+|+|+++ +||||+|||||||||||+|||+|+|||++||||| ||+.+
T Consensus 247 ~~FDViVt~NlfGDILSD~aa~l~GslGl~pSanig~~~~a~fEpvHGSAPdIAGk~iANP~A~IlS~amML~~~lg~~~ 326 (375)
T 3vmk_A 247 NEFDVMLCSNLFGDIVSDEIAMLTGSMGLLASISMNSQGFGMYEPAGGSAPDIAGQGIANPVAQILSAALLLRHSLKLED 326 (375)
T ss_dssp GGCSEEEECHHHHHHHHHHHHHHHTCGGGCEEEEECTTSCEEEEESSCCCTTTTTSSCSCCHHHHHHHHHHHHHTTCCHH
T ss_pred ccCcEEEECchhHHHHHHHHHHhcCCccccceeeeCCCCceEEecCCCCchhccCCCccCcHHHHHHHHHHHHHHCCCHH
Confidence 999999999999999999999999999999999999986 9999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHcCccccCCC-C---C--CCCHHHHHHHHHhC
Q psy8787 326 HADVIQKAALDTIKEGKYRTGDL-G---G--KAKCSEFTNEICSK 364 (364)
Q Consensus 326 ~a~~i~~Av~~~~~~g~~~T~Dl-g---g--~~~T~e~~~av~~~ 364 (364)
+|++|++||.++|++|+ +|+|| | | .+||+||+|+|+++
T Consensus 327 ~A~~Ie~AV~~~l~~G~-~T~Dl~g~~~G~~~~~T~e~~~aV~~~ 370 (375)
T 3vmk_A 327 AALAIEAAVSKALSDGY-LTCELLPASERSQAKSTSQMGDYIAQA 370 (375)
T ss_dssp HHHHHHHHHHHHHHTTC-CCGGGSCGGGGGGCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC-CCchhccCCCCCCccCHHHHHHHHHHH
Confidence 99999999999999996 89999 5 6 89999999999863
No 14
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1
Probab=100.00 E-value=3.2e-107 Score=798.83 Aligned_cols=315 Identities=32% Similarity=0.473 Sum_probs=301.1
Q ss_pred CCCccccCCCCcCHHHHHHHHHHHHhhc----CCCceeEEEEeeeeeecCCCCccccchhHHHHhhhcCEEEEcccc---
Q psy8787 43 QWSWRGLKVQGLGEFNLYANVRPCRSLE----GYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVCNSNYATKWFSE--- 115 (364)
Q Consensus 43 ~~~i~~i~GDGIGp~EV~a~~r~Vl~a~----g~~i~~~~vdig~~re~~~G~Y~~lp~etl~~ik~~daiLkGav~--- 115 (364)
+.+|++|||||||| ||++++++||+++ +++++|+++++|...++++|+ ++|++++++++++|++||||++
T Consensus 12 ~~~I~vipGDGIGp-EV~~~a~~Vl~a~~~~~~~~i~~~~~~~G~~~~~~~g~--~lp~~tl~~~~~~da~L~Gavg~P~ 88 (366)
T 1vlc_A 12 HMKIAVLPGDGIGP-EVVREALKVLEVVEKKTGKTFEKVFGHIGGDAIDRFGE--PLPEETKKICLEADAIFLGSVGGPK 88 (366)
T ss_dssp EEEEEEEEESTHHH-HHHHHHHHHHHHHHHHHCCEEEEEECCCTHHHHHHHSS--SSCHHHHHHHHHSSEEEEEECCCGG
T ss_pred ceEEEEeCCCCccH-HHHHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCC--cCCHHHHHHHHHCCEEEECCccCCc
Confidence 45799999999999 9999999999998 899999999999988889997 8999999999999999999993
Q ss_pred -----------cc----hhhhcccceeeeeeeccCCCC--CCC------CCccEEEEccCCCccccCceeeeeCCEEEEE
Q psy8787 116 -----------RG----ASVEFNLYANVRPCRSLEGYP--TLY------DDVDVVTIRENTEGEYSGIEHEIVDGVVQSI 172 (364)
Q Consensus 116 -----------~g----LR~~ldlyanvRP~~~~pg~~--~~~------~~iD~vIvREnteg~Y~g~~~~~~~~~a~~~ 172 (364)
++ ||+.||||+|+||||++||++ +|+ +++|+|||||||||+|+|.++...++++.++
T Consensus 89 ~~~~~~~~r~~~~~~l~LRk~ldlyaN~RP~~~~pgl~~~splk~~~~~~~vDivIvREnteG~Y~g~~~~~~~~~a~~~ 168 (366)
T 1vlc_A 89 WDDLPPEKRPEIGGLLALRKMLNLYANIRPIKVYRSLVHVSPLKEKVIGSGVDLVTVRELSYGVYYGQPRGLDEEKGFDT 168 (366)
T ss_dssp GTTSCSTTSHHHHTHHHHHHHTTCCEEEEEEECCGGGGGGSSSCHHHHTTCCEEEEEEECSSGGGTEEEEEECSSCEEEE
T ss_pred cccCCcccCcccchhHHHHHHhCCEEEEEEccccCCCCCcCCCcccccCCCceEEEEEeCCCCeecCCccccCCCeEEEE
Confidence 11 899999999999999999997 566 5799999999999999999988778899999
Q ss_pred EEecHHHHHHHHHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhhcCCCeeEeeEeHHHHHHHHhcCCCCccE
Q psy8787 173 KLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLDTVCLNMVQDPTQYDV 252 (364)
Q Consensus 173 ~~~t~~~~eriar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp~i~~~~~~vD~~~~~lv~~P~~fdV 252 (364)
++|||++++||+|+||+||++| |+|||+|||+|||+ +|+||+++|+|++++||+|+++|++||++|||||++|++|||
T Consensus 169 ~~~Tr~~~eRIar~AFe~A~~r-rkkVt~v~KaNvlk-t~glf~~~~~eva~eypdV~~~~~~VD~~~mqlv~~P~~FDV 246 (366)
T 1vlc_A 169 MIYDRKTVERIARTAFEIAKNR-RKKVTSVDKANVLY-SSMLWRKVVNEVAREYPDVELTHIYVDNAAMQLILKPSQFDV 246 (366)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTT-TSEEEEEECTTTCH-HHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGCSE
T ss_pred EEEcHHHHHHHHHHHHHHHHHc-CCeEEEEECCcccc-cchHHHHHHHHHHHHCCCceEEeeeHHHHHHHHhhCcccceE
Confidence 9999999999999999999998 78999999999999 899999999999999999999999999999999999999999
Q ss_pred EEeCCCcchhhhhhhhhccCCCCcccccccCCCceeEeeccCCCCCccCCCCCChhHHHHHHHHHHHh-cCcHHHHHHHH
Q psy8787 253 LVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGTAPDIAGKDLANPTALLLSAVMMLRH-LDLNTHADVIQ 331 (364)
Q Consensus 253 ivt~Nl~GDIlSD~aa~l~G~lGl~psa~ig~~~~~fEp~HGsapdiaGk~~aNP~a~ils~ammL~~-lg~~~~a~~i~ 331 (364)
|||+|||||||||++|+++||+||+||+|+| +.+||||+|||||||||||+|||+|+|||++||||| ||++++|++|+
T Consensus 247 ivt~NlfGDILSD~aa~l~GslGl~pSanig-~~alfEpvHGSAPdIAGk~iANP~A~IlS~ammL~~slg~~~~A~~Ie 325 (366)
T 1vlc_A 247 ILTTNMFGDILSDESAALPGSLGLLPSASFG-DKNLYEPAGGSAPDIAGKNIANPIAQILSLAMMLEHSFGMVEEARKIE 325 (366)
T ss_dssp EEECHHHHHHHHHHHTTSSSCGGGCEEEEES-SSEEEEESSCCCTTTTTTTCSCCHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred EEEcchhHHHHHHHHHHhcCccccccEeeeC-CceeeecCCCchhhcCCCCccCcHHHHHHHHHHHHHHcCChhHHHHHH
Confidence 9999999999999999999999999999999 779999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHHcCccccCCCC---CC-CCHHHHHHHHHhC
Q psy8787 332 KAALDTIKEGKYRTGDLG---GK-AKCSEFTNEICSK 364 (364)
Q Consensus 332 ~Av~~~~~~g~~~T~Dlg---g~-~~T~e~~~av~~~ 364 (364)
+||.+++++| ++|+||| |+ +||+||+|+|+++
T Consensus 326 ~Av~~~l~~g-~~T~Dlg~~gg~~~~T~e~~daV~~~ 361 (366)
T 1vlc_A 326 RAVELVIEEG-YRTRDIAEDPEKAVSTSQMGDLICKK 361 (366)
T ss_dssp HHHHHHHHTT-CCCGGGCSSGGGCCCHHHHHHHHHHH
T ss_pred HHHHHHHHcC-CcccccccCCCCCcCHHHHHHHHHHH
Confidence 9999999999 5899998 67 8999999999873
No 15
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A*
Probab=100.00 E-value=1.1e-106 Score=807.25 Aligned_cols=335 Identities=28% Similarity=0.470 Sum_probs=312.4
Q ss_pred cccceeEeeccchhhhcccccCCCCCCCCccccCCCCcCHHHHHHHHHHHHhhc-------CCCceeEEEEeeeeeecCC
Q psy8787 17 NTVETISYLTLSELISAQYINTPSISQWSWRGLKVQGLGEFNLYANVRPCRSLE-------GYPTLYDDVDVVTIRENTE 89 (364)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~i~GDGIGp~EV~a~~r~Vl~a~-------g~~i~~~~vdig~~re~~~ 89 (364)
++|+||++.. +.++ + | ..|+|++|||||||| ||++++++||+++ +++++|+++++|..+++++
T Consensus 7 ~~~~~~~~~~-~~~~---v---p--~~~~I~vipGDGIGp-EV~~~a~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~ 76 (409)
T 2e0c_A 7 EDGEKIKFDK-GKWI---V---P--NKPVILYIEGDGIGP-EITNAAIKVINKAVERAYGSSREIKWLEVYAGEKAEKLV 76 (409)
T ss_dssp TTCBCCEESS-SCEE---C---C--SSBEEEEECCSTTHH-HHHHHHHHHHHHHHHHHHTTSCCCEEEECCCTHHHHHHH
T ss_pred CCCceEEecC-CeEe---c---C--CCceEeeCCCCCcCH-HHHHHHHHHHHHHHHhhcCCCCceEEEEEechHHHHHhh
Confidence 4599999763 4332 2 4 678999999999999 9999999999987 3899999999999888899
Q ss_pred CCccccchhHHHHhhhcCEEEEcccc-------cc----hhhhcccceeeeeeeccCCCCCCCC---CccEEEEccCCCc
Q psy8787 90 GEYSGIEHEIVDGVCNSNYATKWFSE-------RG----ASVEFNLYANVRPCRSLEGYPTLYD---DVDVVTIRENTEG 155 (364)
Q Consensus 90 G~Y~~lp~etl~~ik~~daiLkGav~-------~g----LR~~ldlyanvRP~~~~pg~~~~~~---~iD~vIvREnteg 155 (364)
|+ ++|++++++++++|++||||++ ++ ||+.||||+|+|||+++||+++|++ ++|+|||||||||
T Consensus 77 g~--~lp~etl~~~k~~da~LkGav~tP~~~~~~s~~l~LR~~LdlyanvRPv~~~~g~~splk~~~~vDivIvREnteg 154 (409)
T 2e0c_A 77 ND--RFPKETQEMLLKYRVVLKGPLETPIGKGWKSVNVAIRLMLDLYANIRPVKYIEGLESPLKHPEKVDMIIFRENTDD 154 (409)
T ss_dssp SC--SSCHHHHHHHHHHCEEEECCCC--------CHHHHHHHHTTCCEEEEEEECCTTCCCSBSCCTTCEEEEEEECSSG
T ss_pred CC--cCCHHHHHHHHHCCEEEECCccCCCcccccChhHHHHHHcCCEEEEEEEeccCCCCCCCCCccCCcEEEEEcCCCC
Confidence 97 8999999999999999999994 11 9999999999999999999998875 6999999999999
Q ss_pred cccCceeee--------------------eCCEEEEEEEecHHHHHHHHHHHHHHHHhCCCCceEEEEeCcccccccHHH
Q psy8787 156 EYSGIEHEI--------------------VDGVVQSIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLF 215 (364)
Q Consensus 156 ~Y~g~~~~~--------------------~~~~a~~~~~~t~~~~eriar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf 215 (364)
+|+|++++. .++++.++++||+++++||+|+||+||++|+|++||+|||+|||+.|||+|
T Consensus 155 ~Y~g~e~~~~~~~~~~v~~f~~~~~~~~~~~~~a~~~~~~t~~~~eRiar~AFe~A~~r~rkkVt~v~KaNVlk~sdglf 234 (409)
T 2e0c_A 155 LYRGIEYPFNSEEAKKIRDFLRKELKVEIEDDTGIGIKVMSKYKTQRITRLAIQYAIEHKRKKVTIMHKGNVMKYTEGAF 234 (409)
T ss_dssp GGGCCEECTTSHHHHHHHHHHHHHSCCCCCSSEEEEEEEEEHHHHHHHHHHHHHHHHHTTCCEEEEEECTTTSTTTHHHH
T ss_pred EeCCcccccCCCcccchhhccchhccccCCCceEEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECccchhhhhhHH
Confidence 999998753 236899999999999999999999999999888999999999999999999
Q ss_pred HHHHHHHhh-cCCC-----------------eeEeeEeHHHHHHHHhcCCCCccEEEeCCCcchhhhhhhhhccCCCCcc
Q psy8787 216 LRCCRDAAE-KFPE-----------------VKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLT 277 (364)
Q Consensus 216 ~~~~~~va~-~yp~-----------------i~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~GDIlSD~aa~l~G~lGl~ 277 (364)
+++|+|+++ +||+ |+++|++||+||||||++|++||||||+|||||||||++|+++||+||+
T Consensus 235 ~~~~~eva~~eypd~~~~~~~~~~~~~~~~~I~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDILSD~aa~l~GslGl~ 314 (409)
T 2e0c_A 235 REWAYEVALKEYRDFIVTEEEINQGKPDQGKIILNDRIADNMFQQIIIRPEEYDIILAPNVNGDYISDAAGALIGNIGML 314 (409)
T ss_dssp HHHHHHHHHHHSTTTEEEHHHHTTTCCCTTSEEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHTTSCGGGC
T ss_pred HHHHHHHHHHhCCCccccccccccccccCCeEEEEEEEHHHHHHHHhhCcccccEEEECCcchHHHHHHHHHhcCCcccC
Confidence 999999998 9999 9999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCceeEeeccCCCCCccCCCCCChhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHcCccccCCCCC-----CC
Q psy8787 278 PSGNIGLNGALFESVHGTAPDIAGKDLANPTALLLSAVMMLRHLDLNTHADVIQKAALDTIKEGKYRTGDLGG-----KA 352 (364)
Q Consensus 278 psa~ig~~~~~fEp~HGsapdiaGk~~aNP~a~ils~ammL~~lg~~~~a~~i~~Av~~~~~~g~~~T~Dlgg-----~~ 352 (364)
||+|+|++++||||+|||||||||||+|||+|+|||++|||||||++++|++|++||.+++++|+ +|+|||| .+
T Consensus 315 pSanig~~~a~fEp~HGSAPdiAGk~iANP~A~IlS~ammL~~lg~~~~A~~Ie~Av~~~l~~g~-~T~Dl~g~~g~~~~ 393 (409)
T 2e0c_A 315 GGANIGDEGGMFEAIHGTAPKYAGKNVANPTGIIKAGELMLRWMGWNEAADLIEKAINMAIRDKK-VTQDIARFMGVKAL 393 (409)
T ss_dssp EEEEEETTEEEEEESSCCCGGGTTTTCSCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTC-CCHHHHHHHTSCCC
T ss_pred ceEEECCCceEEecCCCChhhhcCCcccCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCC-ccccccccCCCCCc
Confidence 99999998899999999999999999999999999999999999999999999999999999996 7999964 67
Q ss_pred CHHHHHHHHHhC
Q psy8787 353 KCSEFTNEICSK 364 (364)
Q Consensus 353 ~T~e~~~av~~~ 364 (364)
||+||+|+|+++
T Consensus 394 ~T~e~~daV~~~ 405 (409)
T 2e0c_A 394 GTKEYADELIKI 405 (409)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999999873
No 16
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus}
Probab=100.00 E-value=1.1e-106 Score=807.10 Aligned_cols=340 Identities=33% Similarity=0.480 Sum_probs=315.9
Q ss_pred cccccccccccceeEeeccchhhhcccccCCCCCCCCccccCCCCcCHHHHHHHHHHHHhhc----CCCceeEEEEeeee
Q psy8787 9 LLKLPLQCNTVETISYLTLSELISAQYINTPSISQWSWRGLKVQGLGEFNLYANVRPCRSLE----GYPTLYDDVDVVTI 84 (364)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~i~GDGIGp~EV~a~~r~Vl~a~----g~~i~~~~vdig~~ 84 (364)
-++.| +.++||.+. .+.+. + | ..|+|++|||||||| ||++++++||+++ +++++|+++++|..
T Consensus 5 ~~~~~---~~~~~i~~~-~~~~~---v---p--~~~~I~vipGDGIGp-EV~~~a~~Vl~a~~~~~~~~i~~~~~~~G~~ 71 (412)
T 2iv0_A 5 KVKPP---ENGEKIRYE-NGKLI---V---P--DNPIIPYFEGDGIGK-DVVPAAIRVLDAAADKIGKEVVWFQVYAGED 71 (412)
T ss_dssp SCCCC---SSCBCCEEE-TTEEE---C---C--SSBEEEEECCSTTHH-HHHHHHHHHHHHHHHHHTCCCEEEECCCSHH
T ss_pred cccCC---CCCCeEEec-CCeEe---C---C--CCCEEEEECCCCcCH-HHHHHHHHHHHHHHHhcCCCeEEEEEeCCHH
Confidence 34555 569999986 44433 2 3 578999999999999 9999999999998 88999999999998
Q ss_pred eecCCCCccccchhHHHHhhhcCEEEEcccc-------cc----hhhhcccceeeeeeeccCCCCCCCC---CccEEEEc
Q psy8787 85 RENTEGEYSGIEHEIVDGVCNSNYATKWFSE-------RG----ASVEFNLYANVRPCRSLEGYPTLYD---DVDVVTIR 150 (364)
Q Consensus 85 re~~~G~Y~~lp~etl~~ik~~daiLkGav~-------~g----LR~~ldlyanvRP~~~~pg~~~~~~---~iD~vIvR 150 (364)
+++++|+ ++|++++++++++|++||||++ ++ ||+.||||+|+|||+++||+++|++ ++|+||||
T Consensus 72 ~~~~~G~--~lp~etl~~~k~~da~LkGav~tP~~~~~~s~~l~LR~~Ldlyan~RPv~~~~g~~splk~~~~vDivIvR 149 (412)
T 2iv0_A 72 AYKLYGN--YLPDDTLNAIKEFRVALKGPLTTPVGGGYRSLNVTIRQVLDLYANVRPVYYLKGVPSPIKHPEKVNFVIFR 149 (412)
T ss_dssp HHHHHSC--SSCHHHHHHHHHHCEEEECCCCCCSSSSSSHHHHHHHHHTTCCEEEEEEECCTTSCCSBSCGGGCEEEEEE
T ss_pred HHHhhCC--cCCHHHHHHHHHCCEEEECCccCCCCccccChhHHHHHHcCCeEEEEEEEecCCCCCCCCCcCCCCEEEEe
Confidence 8889997 8999999999999999999994 11 9999999999999999999998875 59999999
Q ss_pred cCCCccccCceeee--------------------eCCEEEEEEEecHHHHHHHHHHHHHHHHhCCCCceEEEEeCccccc
Q psy8787 151 ENTEGEYSGIEHEI--------------------VDGVVQSIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRM 210 (364)
Q Consensus 151 Enteg~Y~g~~~~~--------------------~~~~a~~~~~~t~~~~eriar~Af~~A~~~~~~~Vt~v~KaNv~~~ 210 (364)
|||||+|+|+++.. .++++.++++||+++++||+|+||+||++|+|++||+|||+|||+.
T Consensus 150 EnTeg~Y~G~e~~~~~~~~~~v~~~~~~~~~~~~~~~~a~~~~~~t~~~~eRiar~AFe~A~~r~rkkVt~v~KaNVlk~ 229 (412)
T 2iv0_A 150 ENTEDVYAGIEWPRGSEEALKLIRFLKNEFGVTIREDSGIGIKPISEFATKRLVRMAIRYAIENNRKSVTLVHKGNIMKY 229 (412)
T ss_dssp ECSSSGGGCCEECTTCHHHHHHHHHHHHHHCCCCCTTEEEEEEEEEHHHHHHHHHHHHHHHHHTTCSEEEEEECTTTCTT
T ss_pred cCCCCEeCCcccccCCccccchhhcccccccccCCCceEEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECccchhh
Confidence 99999999998753 2368899999999999999999999999998889999999999999
Q ss_pred ccHHHHHHHHHHhh-cCCC--------------------eeEeeEeHHHHHHHHhcCCCCccEEEeCCCcchhhhhhhhh
Q psy8787 211 SDGLFLRCCRDAAE-KFPE--------------------VKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAG 269 (364)
Q Consensus 211 ~~~lf~~~~~~va~-~yp~--------------------i~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~GDIlSD~aa~ 269 (364)
|+|+|+++|+|+++ +||+ |+++|++||++|||||++|++||||||+|||||||||++|+
T Consensus 230 t~Glf~~~~~eva~~eypd~~~~~~~~~~~~~~~~~~~~I~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDILSD~aA~ 309 (412)
T 2iv0_A 230 TEGAFRDWGYEVAKQEFGEYCITEDELWDKYGGKQPEGKIVVKDRIADNMFQQILTRTDEYDVIALPNLNGDYLSDAAAA 309 (412)
T ss_dssp THHHHHHHHHHHHHHHSTTTEECHHHHHHHHTTCCCTTCEEEEEEEGGGHHHHHHHSGGGCCEEEECHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCCccccccchhhhccccccCCeEEEEEEEHHHHHHHHhhCcccccEEEECCcchHHHHHHHHH
Confidence 99999999999998 9999 99999999999999999999999999999999999999999
Q ss_pred ccCCCCcccccccCCCceeEeeccCCCCCccCCCCCChhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHcCccccCCCC
Q psy8787 270 LVGGLGLTPSGNIGLNGALFESVHGTAPDIAGKDLANPTALLLSAVMMLRHLDLNTHADVIQKAALDTIKEGKYRTGDLG 349 (364)
Q Consensus 270 l~G~lGl~psa~ig~~~~~fEp~HGsapdiaGk~~aNP~a~ils~ammL~~lg~~~~a~~i~~Av~~~~~~g~~~T~Dlg 349 (364)
++||+||+||+|+|++++||||+|||||||||||+|||+|+|||++|||||||+.++|++|++||.+++++|+ +|+|||
T Consensus 310 l~GslGlapsanig~~~a~fEp~HGSAPdiAGk~iANP~A~IlS~amML~~lg~~~~A~~Ie~Av~~~l~~g~-~T~Dl~ 388 (412)
T 2iv0_A 310 LIGGLGIAPGSNIGDGIGVFEPVHGSAPKYAGQNKVNPTAEILTGALMFEYIGWKDASEMIKKAVEMTISSGI-VTYDIH 388 (412)
T ss_dssp HTTCGGGCEEEEEETTEEEEEESSCCCSTTTTSSCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTE-ECHHHH
T ss_pred hcCCccccceEEECCCceEEeCCCCChhhcCCCcccCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCC-cccccc
Confidence 9999999999999998899999999999999999999999999999999999999999999999999999996 799996
Q ss_pred ---C--CCCHHHHHHHHHhC
Q psy8787 350 ---G--KAKCSEFTNEICSK 364 (364)
Q Consensus 350 ---g--~~~T~e~~~av~~~ 364 (364)
| .+||+||+|+|+++
T Consensus 389 ~~~G~~~~~T~e~~daV~~~ 408 (412)
T 2iv0_A 389 RHMGGTKVGTREFAEAVVEN 408 (412)
T ss_dssp HHHCSEECCHHHHHHHHHHH
T ss_pred cccCCCCcCHHHHHHHHHHH
Confidence 5 67999999999873
No 17
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans}
Probab=100.00 E-value=3.2e-106 Score=806.72 Aligned_cols=337 Identities=32% Similarity=0.455 Sum_probs=313.3
Q ss_pred cccceeEeeccchhhhcccccCCCCCCCCccccCCCCcCHHHHHHHHHHHHhhc-------CCCceeEEEEeeeeeecCC
Q psy8787 17 NTVETISYLTLSELISAQYINTPSISQWSWRGLKVQGLGEFNLYANVRPCRSLE-------GYPTLYDDVDVVTIRENTE 89 (364)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~i~GDGIGp~EV~a~~r~Vl~a~-------g~~i~~~~vdig~~re~~~ 89 (364)
+.+|||++.. +.++ + | ..|+|++|||||||| ||++++++||+++ +++++|+++++|..+++++
T Consensus 9 ~~~~~i~~~~-~~~~---v---p--~~~~I~vipGDGIGp-EV~~aa~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~ 78 (429)
T 2d4v_A 9 ATGSPLTLLN-GVLQ---V---P--DQPIIPFIEGDGIGC-DVTPAMRSVVDAAVAKVYGGQRQIAWMELFAGQKAVQLY 78 (429)
T ss_dssp SSCBCCEEET-TEEE---C---C--SSBEEEEECCSTTHH-HHHHHHHHHHHHHHHHHHTTSCCCEEEEECCTHHHHHHH
T ss_pred CCCCeEEecC-CeEE---c---C--CCcEEEEECCCCCCH-HHHHHHHHHHHHHHHhhcCCCCceEEEEEeeehhhhhcc
Confidence 5699999864 4332 2 4 678999999999999 9999999999987 3899999999999888889
Q ss_pred CCccccchhHHHHhhhcCEEEEccccc-------c----hhhhcccceeeeeeeccCCCCCCCC---CccEEEEccCCCc
Q psy8787 90 GEYSGIEHEIVDGVCNSNYATKWFSER-------G----ASVEFNLYANVRPCRSLEGYPTLYD---DVDVVTIRENTEG 155 (364)
Q Consensus 90 G~Y~~lp~etl~~ik~~daiLkGav~~-------g----LR~~ldlyanvRP~~~~pg~~~~~~---~iD~vIvREnteg 155 (364)
|++.++|++++++++++|++||||++. + ||+.||||+|+||||++||+++|++ ++|+|||||||||
T Consensus 79 G~~~~lp~etl~~~k~~da~lkGav~tP~~~~~~s~~l~LRk~LdLyanvRPv~~~~gv~splk~~~~vDivIvREnTeg 158 (429)
T 2d4v_A 79 GEGQYLPDETMAAIREYKVAIKGPLETPVGGGIRSLNVAMRQDLDLYVCLRPVRYFEGTPSPMRHPEKVDMVIFRENSED 158 (429)
T ss_dssp CTTCSSCHHHHHHHHHHCEEEECCCCCCSSSSSCCHHHHHHHHTTCCEEEEEEECCTTCCCSBSCGGGCEEEEEEECSCG
T ss_pred CCCCCCcHHHHHHHHHCCEEEECCccCCCcccccChhHHHHHHcCCEEEEEEEEecCCCCCCCCCcCCCCEEEEEeCCCC
Confidence 964479999999999999999999941 1 9999999999999999999998875 6999999999999
Q ss_pred cccCceeee-----------------------eCCEEEEEEEecHHHHHHHHHHHHHHHHhCCCCceEEEEeCccccccc
Q psy8787 156 EYSGIEHEI-----------------------VDGVVQSIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSD 212 (364)
Q Consensus 156 ~Y~g~~~~~-----------------------~~~~a~~~~~~t~~~~eriar~Af~~A~~~~~~~Vt~v~KaNv~~~~~ 212 (364)
+|+|+++.. .++++.++++|||++++||+|+||+||++|+|++||+|||+|||+.||
T Consensus 159 ~Y~G~e~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~T~~~~eRIar~AFe~A~~r~rkkVT~v~KaNVlk~td 238 (429)
T 2d4v_A 159 IYAGIEWPAGSPEAEKIIRFLREEMGVTKIRFPDSSAIGIKPVSTEGSERLIRRTIQYALEHGKPSVSLVHKGNIMKFTE 238 (429)
T ss_dssp GGGCCEECTTCHHHHHHHHHHHHTSCCCCCSCGGGEEEEEEEEEHHHHHHHHHHHHHHHHHTTCSEEEEEECTTTSTTTH
T ss_pred eecCcccccCCcccccceeccccccccccccCCCceEEEEEEecHHHHHHHHHHHHHHHHhcCCCeEEEEECCccchhhh
Confidence 999998753 235889999999999999999999999999888999999999999999
Q ss_pred HHHHHHHHHHhh-cCCC--------------------------------eeEeeEeHHHHHHHHhcCCCCccEEEeCCCc
Q psy8787 213 GLFLRCCRDAAE-KFPE--------------------------------VKFEEKYLDTVCLNMVQDPTQYDVLVMPNLY 259 (364)
Q Consensus 213 ~lf~~~~~~va~-~yp~--------------------------------i~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~ 259 (364)
|+|+++|+|+++ +||+ |+++|++||+||||||++|++||||||+|||
T Consensus 239 Glf~~~~~eva~~eypd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~vD~~~mqlv~~P~~fDVivt~Nlf 318 (429)
T 2d4v_A 239 GGFRDWGYALAEREFAGRVFTWRQKAAISKAEGKAAGQKAEQQAIADGKLIIKDVIADNFLQQILLRPEDYSVVATLNLN 318 (429)
T ss_dssp HHHHHHHHHHHHHHSTTTEEEHHHHHHHHHHHCHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHCGGGCCEEEECHHH
T ss_pred HHHHHHHHHHHHHhCCCccccccccccccccccccccchhccccccCCeeEEEEeeHHHHHHHHhhCcccCcEEEECCcc
Confidence 999999999998 9999 9999999999999999999999999999999
Q ss_pred chhhhhhhhhccCCCCcccccccCCCceeEeeccCCCCCccCCCCCChhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Q psy8787 260 GDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGTAPDIAGKDLANPTALLLSAVMMLRHLDLNTHADVIQKAALDTIK 339 (364)
Q Consensus 260 GDIlSD~aa~l~G~lGl~psa~ig~~~~~fEp~HGsapdiaGk~~aNP~a~ils~ammL~~lg~~~~a~~i~~Av~~~~~ 339 (364)
||||||++|+++||+||+||+|+|++++||||+|||||||||||+|||+|+|||++|||||||+.++|++|++||.++|+
T Consensus 319 GDILSD~aA~l~GslGl~pSanig~~~a~fEpvHGSAPdiAGk~iANP~A~IlS~amML~hlg~~~~A~~Ie~Av~~~l~ 398 (429)
T 2d4v_A 319 GDYVSDALAAEVGGIGMAPGANLSDTHAIFEATHGTAPDIAGQGKANPSSLILSAVMMLEHLGWGEAAQAIVAAMNATIA 398 (429)
T ss_dssp HHHHHHHHHHHTTCGGGCCCEEECSSCEEEECSCCCCTTTTTTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhcCCHhhcCeeEECCCceEEecCCCChhHhcCCCCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998899999999999999999999999999999999999999999999999999999
Q ss_pred cCccccCCCCC------CCCHHHHHHHHHhC
Q psy8787 340 EGKYRTGDLGG------KAKCSEFTNEICSK 364 (364)
Q Consensus 340 ~g~~~T~Dlgg------~~~T~e~~~av~~~ 364 (364)
+|. +|+|||| .+||+||+|+|+++
T Consensus 399 ~g~-~T~Dlg~~~~g~~~~~T~e~~daV~~~ 428 (429)
T 2d4v_A 399 AGE-VTGDLAALRGDVPALSTTEFTAALIRR 428 (429)
T ss_dssp TTC-EEHHHHTTCTTCCEECHHHHHHHHHTT
T ss_pred cCC-ccccccccCCCCCCcCHHHHHHHHHhh
Confidence 996 7999974 47999999999975
No 18
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A
Probab=100.00 E-value=1.9e-106 Score=794.74 Aligned_cols=317 Identities=32% Similarity=0.518 Sum_probs=298.5
Q ss_pred CCCCccccCCCCcCHHHHHHHHHHHHhhc----CCCceeEEEEeeeeeecCCCCccccchhHHHHhhhcCEEEEcccc--
Q psy8787 42 SQWSWRGLKVQGLGEFNLYANVRPCRSLE----GYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVCNSNYATKWFSE-- 115 (364)
Q Consensus 42 ~~~~i~~i~GDGIGp~EV~a~~r~Vl~a~----g~~i~~~~vdig~~re~~~G~Y~~lp~etl~~ik~~daiLkGav~-- 115 (364)
..++|++|||||||| ||++++++||+++ +++++|+++++|...++++|+ ++|++++++++++|++||||++
T Consensus 3 ~~~~I~vipGDGIGp-Ev~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~g~--~lp~~tl~~~~~~da~L~Gavg~p 79 (363)
T 1cnz_A 3 KNYHIAVLPGDGIGP-EVMAQALKVMDAVRSRFDMRITTSHYDVGGIAIDNHGH--PLPKATVEGCEQADAILFGSVGGP 79 (363)
T ss_dssp CCEEEEEEEESTTHH-HHHHHHHHHHHHHHHHHTCCEEEEECCCTHHHHHHHSS--SSCHHHHHHHHTSSEEEEEECCCG
T ss_pred CccEEEEeCCCCcCH-HHHHHHHHHHHHHHHhcCCceEEEEEeCChHHHhhcCC--cCcHHHHHHHHHCCEEEEccccCC
Confidence 457899999999999 9999999999997 689999999999988889997 8999999999999999999994
Q ss_pred ------------cc----hhhhcccceeeeeeeccCCCC--CCC------CCccEEEEccCCCccccCceeee----eCC
Q psy8787 116 ------------RG----ASVEFNLYANVRPCRSLEGYP--TLY------DDVDVVTIRENTEGEYSGIEHEI----VDG 167 (364)
Q Consensus 116 ------------~g----LR~~ldlyanvRP~~~~pg~~--~~~------~~iD~vIvREnteg~Y~g~~~~~----~~~ 167 (364)
++ ||+.||||+|+||||++||+. +|+ +++|+|||||||||+|+|+++.. ..+
T Consensus 80 ~~~~~~~~~~~e~~~~l~LR~~ldlyanvRP~~~~pgl~~~splk~~~~~~~vDivivREnteg~Y~g~~~~~~~~~~~~ 159 (363)
T 1cnz_A 80 KWENLPPESQPERGALLPLRKHFKLFSNLRPAKLYQGLEAFCPLRADIAANGFDILCVRELTGGIYFGQPKGREGSGQYE 159 (363)
T ss_dssp GGTTSCGGGSTTHHHHHHHHHHHTCCEEEEEEECCTTCGGGCSBCHHHHHHCCEEEEEEECSSGGGTCSSCEEECCGGGC
T ss_pred ccccCCcccCcccchHHHHHHHcCCEEEEEEEEecCCccCCCCCcccccCCCCCEEEEecccCCeecCCcCccccCCCCc
Confidence 12 999999999999999999983 565 57999999999999999986433 235
Q ss_pred EEEEEEEecHHHHHHHHHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhhcCCCeeEeeEeHHHHHHHHhcCC
Q psy8787 168 VVQSIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLDTVCLNMVQDP 247 (364)
Q Consensus 168 ~a~~~~~~t~~~~eriar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp~i~~~~~~vD~~~~~lv~~P 247 (364)
++.+++++||++++||+|+||+||++| |+|||+|||+|||+ +++||+++|+|++++||+|+++|++||+||||||++|
T Consensus 160 ~a~~~~~~T~~~~eRiar~AFe~A~~r-rkkVt~v~KaNvlk-~~~lf~~~~~eva~eypdI~~~~~~vD~~~m~lv~~P 237 (363)
T 1cnz_A 160 KAFDTEVYHRFEIERIARIAFESARKR-RRKVTSIDKANVLQ-SSILWREIVNDVAKTYPDVELAHMYIDNATMQLIKDP 237 (363)
T ss_dssp EEEEEEEEEHHHHHHHHHHHHHHHHTT-TSEEEEEECTTTCH-HHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCG
T ss_pred eEEEEEEEcHHHHHHHHHHHHHHHHhc-CCeEEEEECCcccc-cchhHHHHHHHHHHHCCCceEeeeeHHHHHHHHhhCc
Confidence 789999999999999999999999998 68999999999999 8999999999999999999999999999999999999
Q ss_pred CCccEEEeCCCcchhhhhhhhhccCCCCcccccccCCCc-eeEeeccCCCCCccCCCCCChhHHHHHHHHHHHh-cCcHH
Q psy8787 248 TQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNG-ALFESVHGTAPDIAGKDLANPTALLLSAVMMLRH-LDLNT 325 (364)
Q Consensus 248 ~~fdVivt~Nl~GDIlSD~aa~l~G~lGl~psa~ig~~~-~~fEp~HGsapdiaGk~~aNP~a~ils~ammL~~-lg~~~ 325 (364)
++||||||+|||||||||++|+++||+||+||+|+|+++ +||||+|||||||||||+|||+|+|||++||||| ||+++
T Consensus 238 ~~FDVivt~NlfGDIlSD~aa~l~GslGl~pSanig~~~~a~fEpvHGSAPdiAGk~iANP~A~IlS~ammL~~~lg~~~ 317 (363)
T 1cnz_A 238 SQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGLYEPAGGSAPDIAGKNIANPIAQILSLALLLRYSLDAND 317 (363)
T ss_dssp GGCSEEEECHHHHHHHHHHHHHHHTCGGGCEEEEECTTSCEEEEESSCCCGGGTTTTCSCCHHHHHHHHHHHHHHSSCHH
T ss_pred ccceEEEECCcchHHHHHHHHHhcCCCcccccceeCCCCCeEEEcCCCChhhhcCCCccCcHHHHHHHHHHHHHHCCCHH
Confidence 999999999999999999999999999999999999887 8999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHcCccccCCC-CC-C-CCHHHHHHHHHhC
Q psy8787 326 HADVIQKAALDTIKEGKYRTGDL-GG-K-AKCSEFTNEICSK 364 (364)
Q Consensus 326 ~a~~i~~Av~~~~~~g~~~T~Dl-gg-~-~~T~e~~~av~~~ 364 (364)
+|++|++||.+++++|. +|+|| || + +||+||+|+|+++
T Consensus 318 ~A~~Ie~Av~~~l~~g~-~T~Dl~gG~~~~~T~e~~daV~~~ 358 (363)
T 1cnz_A 318 AATAIEQAINRALEEGV-RTGDLARGAAAVSTDEMGDIIARY 358 (363)
T ss_dssp HHHHHHHHHHHHHHTTC-CCGGGTTTTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCC-cCcccCCCCCCCCHHHHHHHHHHH
Confidence 99999999999999995 89999 78 6 8999999999873
No 19
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A
Probab=100.00 E-value=9e-106 Score=782.99 Aligned_cols=310 Identities=31% Similarity=0.495 Sum_probs=296.0
Q ss_pred CCccccCCCCcCHHHHHHHHHHHHhhcCCCceeEEEEeeeeeecCCCCccccchhHHHHhhhcCEEEEcccc--------
Q psy8787 44 WSWRGLKVQGLGEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVCNSNYATKWFSE-------- 115 (364)
Q Consensus 44 ~~i~~i~GDGIGp~EV~a~~r~Vl~a~g~~i~~~~vdig~~re~~~G~Y~~lp~etl~~ik~~daiLkGav~-------- 115 (364)
++|++|||||||| ||++++++||++++.+++|+++++|...++++|+ ++|++++++++++|++||||++
T Consensus 2 ~~I~vipGDGIGp-Ev~~~a~~Vl~a~~~~~~~~~~~~G~~~~~~~g~--~lp~~t~~~~~~~da~l~Gav~~P~~~~~~ 78 (337)
T 1w0d_A 2 SKLAIIAGDGIGP-EVTAEAVKVLDAVVPGVQKTSYDLGARRFHATGE--VLPDSVVAELRNHDAILLGAIGDPSVPSGV 78 (337)
T ss_dssp CEEEEEEESTTHH-HHHHHHHHHHHHHSTTCEEEECCCSHHHHHHHSC--SSCHHHHHHHTTSSEEEEEECCCTTSCTTH
T ss_pred cEEEEeCCCCcCH-HHHHHHHHHHHHhcCCcEEEEEecchHHHhhhCC--cCCHHHHHHHHHCCEEEECCccCCCCCCcc
Confidence 5799999999999 9999999999998878999999999988889997 8999999999999999999994
Q ss_pred --cc----hhhhcccceeeeeeeccCCCCCCCCC---ccEEEEccCCCccccCceeeee----CCEEEEEEEecHHHHHH
Q psy8787 116 --RG----ASVEFNLYANVRPCRSLEGYPTLYDD---VDVVTIRENTEGEYSGIEHEIV----DGVVQSIKLITEEASSR 182 (364)
Q Consensus 116 --~g----LR~~ldlyanvRP~~~~pg~~~~~~~---iD~vIvREnteg~Y~g~~~~~~----~~~a~~~~~~t~~~~er 182 (364)
++ ||+.||||+|+||||++||+++|+++ +|+|||||||||+|+|.+++.. ++++.+++++||++++|
T Consensus 79 ~~~s~~l~lR~~ldlyan~RP~~~~pg~~s~l~~~~~~DivivREnteg~Y~g~e~~~~~g~~~~~a~~~~~~T~~~~eR 158 (337)
T 1w0d_A 79 LERGLLLRLRFELDHHINLRPARLYPGVASPLSGNPGIDFVVVREGTEGPYTGNGGAIRVGTPNEVATEVSVNTAFGVRR 158 (337)
T ss_dssp HHHHTHHHHHHHTTCCEEEEEEECCTTCCCSBTTCCCCEEEEEEECSCSGGGCCEEEESTTSTTCEEEEEEEEEHHHHHH
T ss_pred cccchHHHHHHHcCCEEEEEEeecCCCCCCcccCCCCCcEEEEecCCCCeecCCcceecCCCCCCeEEEEEEEcHHHHHH
Confidence 11 99999999999999999999999876 9999999999999999998753 35899999999999999
Q ss_pred HHHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhhcCCCeeEeeEeHHHHHHHHhcCCCCccEEEeCCCcchh
Q psy8787 183 VAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDI 262 (364)
Q Consensus 183 iar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp~i~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~GDI 262 (364)
|+|+||+||++| |+|||+|||+|||+.|||||+++|+|++++||+|+++|++||+||||||++|++||||||+||||||
T Consensus 159 iar~AFe~A~~r-rkkVt~v~KaNvlk~s~glf~~~~~eva~eyp~i~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDI 237 (337)
T 1w0d_A 159 VVADAFERARRR-RKHLTLVHKTNVLTFAGGLWLRTVDEVGECYPDVEVAYQHVDAATIHMITDPGRFDVIVTDNLFGDI 237 (337)
T ss_dssp HHHHHHHHHHHT-TSEEEEEECTTTSHHHHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHH
T ss_pred HHHHHHHHHHHc-CCeEEEEECCccchhhhHHHHHHHHHHHHHCCceEEEEEEHHHHHHHHhhCcccccEEEECcchhHH
Confidence 999999999998 7899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccCCCCcccccccCC---CceeEeeccCCCCCccCCCCCChhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Q psy8787 263 LSDMCAGLVGGLGLTPSGNIGL---NGALFESVHGTAPDIAGKDLANPTALLLSAVMMLRHLDLNTHADVIQKAALDTIK 339 (364)
Q Consensus 263 lSD~aa~l~G~lGl~psa~ig~---~~~~fEp~HGsapdiaGk~~aNP~a~ils~ammL~~lg~~~~a~~i~~Av~~~~~ 339 (364)
|||++|+++||+||+||+|+|+ +.+||||+|||||||||||+|||+|+|||++|||||||++++|++|++||.++++
T Consensus 238 lSD~aa~l~GslGl~psanig~~~~~~a~fEp~HGSAPdiAGk~iANP~A~IlS~ammL~~lg~~~~A~~Ie~Av~~~l~ 317 (337)
T 1w0d_A 238 ITDLAAAVCGGIGLAASGNIDATRANPSMFEPVHGSAPDIAGQGIADPTAAIMSVALLLSHLGEHDAAARVDRAVEAHLA 317 (337)
T ss_dssp HHHHHHHHTTCGGGCEEEEECTTCSSCEEEEESSCCCGGGTTSSCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhcCCcccCceeEeCCCCCCceEEecCCCChhhhCCCCCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998 4589999999999999999999999999999999999999999999999999999
Q ss_pred cCccccCCCCC-CCCHHHHHHHHHhC
Q psy8787 340 EGKYRTGDLGG-KAKCSEFTNEICSK 364 (364)
Q Consensus 340 ~g~~~T~Dlgg-~~~T~e~~~av~~~ 364 (364)
+| || ++||+||+|+|+++
T Consensus 318 ~g-------gg~~~~T~e~~~av~~~ 336 (337)
T 1w0d_A 318 TR-------GSERLATSDVGERIAAA 336 (337)
T ss_dssp HC-------TTCCCCHHHHHHHHHHT
T ss_pred cC-------CCCCcCHHHHHHHHHhh
Confidence 98 77 89999999999975
No 20
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1
Probab=100.00 E-value=1.5e-105 Score=787.57 Aligned_cols=315 Identities=27% Similarity=0.448 Sum_probs=295.7
Q ss_pred CCccccCCCCcCHHHHHHHHHHHHhhc----CCCceeEEEEeeeeeecCCCCccccchhHHHHhhhcCEEEEcccc--c-
Q psy8787 44 WSWRGLKVQGLGEFNLYANVRPCRSLE----GYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVCNSNYATKWFSE--R- 116 (364)
Q Consensus 44 ~~i~~i~GDGIGp~EV~a~~r~Vl~a~----g~~i~~~~vdig~~re~~~G~Y~~lp~etl~~ik~~daiLkGav~--~- 116 (364)
++|++|||||||| ||++++++|++++ +++++|+++++|..+++++|+ ++|++++++++++|++||||++ +
T Consensus 2 ~~I~vipGDGIGp-Ev~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~g~--~lp~~tl~~~~~~da~l~Gavg~p~~ 78 (358)
T 1a05_A 2 KKIAIFAGDGIGP-EIVAAARQVLDAVDQAAHLGLRCTEGLVGGAALDASDD--PLPAASLQLAMAADAVILGAVGGPRW 78 (358)
T ss_dssp CEEEEEEESTTHH-HHHHHHHHHHHHHHHHHTCCCEEEECCCHHHHHHHHSS--SSCHHHHHHHHHCSEEEEEECCCGGG
T ss_pred cEEEEECCCCcCH-HHHHHHHHHHHHHHHhcCCceEEEEEeCCcHHHHhhCC--cCCHHHHHHHHHCCEEEECCccCCCc
Confidence 6799999999999 9999999999997 689999999999988889997 8999999999999999999995 1
Q ss_pred -----------c---hhhhcccceeeeeeeccCCCC--CCC-----CCccEEEEccCCCccccCceeee--e--CCEEEE
Q psy8787 117 -----------G---ASVEFNLYANVRPCRSLEGYP--TLY-----DDVDVVTIRENTEGEYSGIEHEI--V--DGVVQS 171 (364)
Q Consensus 117 -----------g---LR~~ldlyanvRP~~~~pg~~--~~~-----~~iD~vIvREnteg~Y~g~~~~~--~--~~~a~~ 171 (364)
+ ||+.||||+|+|||+++||+. +|+ +++|+|||||||||+|+|+++.. . .+++.+
T Consensus 79 ~~~~~~~~~e~~ll~lRk~ldlyanvRP~~~~pgl~~~splk~~~~~~vDivIvREnteg~Y~g~~~~~~~~~~~~~a~~ 158 (358)
T 1a05_A 79 DAYPPAKRPEQGLLRLRKGLDLYANLRPAQIFPQLLDASPLRPELVRDVDILVVRELTGDIYFGQPRGLEVIDGKRRGFN 158 (358)
T ss_dssp TTSCGGGSHHHHHHHHHHHHTCCEEEEEEECCTTSGGGCSBCHHHHTTCEEEEEEECSSSTTTCSSCEEEEETTEEEEEE
T ss_pred ccCCccccchhhHHHHHHHcCCEEEEEEEEecCCccCCCCCccccCCCceEEEEEecCCCcccCCcCccccCCCCceEEE
Confidence 1 899999999999999999983 665 47999999999999999986432 2 246889
Q ss_pred EEEecHHHHHHHHHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhhcCCCeeEeeEeHHHHHHHHhcCCCCcc
Q psy8787 172 IKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLDTVCLNMVQDPTQYD 251 (364)
Q Consensus 172 ~~~~t~~~~eriar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp~i~~~~~~vD~~~~~lv~~P~~fd 251 (364)
++++|+++++||+|+||+||++| |+|||+|||+|||+ +++||+++|+|++++||+|+++|++||+||||||++|++||
T Consensus 159 ~~~~T~~~~eRiar~AFe~A~~r-rkkVt~v~KaNvlk-~~~lf~~~~~eva~eypdI~~~~~~vD~~~mqlv~~P~~FD 236 (358)
T 1a05_A 159 TMVYDEDEIRRIAHVAFRAAQGR-RKQLCSVDKANVLE-TTRLWREVVTEVARDYPDVRLSHMYVDNAAMQLIRAPAQFD 236 (358)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHTT-TSEEEEEECTTTCH-HHHHHHHHHHHHGGGCTTSEEEEEEHHHHHHHHHHCGGGCS
T ss_pred EEEEcHHHHHHHHHHHHHHHHhc-CCeEEEEECCcccc-cchhHHHHHHHHHHHCCCceEEeeeHHHHHHHHHhCCCccc
Confidence 99999999999999999999998 78999999999999 78999999999999999999999999999999999999999
Q ss_pred EEEeCCCcchhhhhhhhhccCCCCcccccccCCCceeEeeccCCCCCccCCCCCChhHHHHHHHHHHHh-cCcHHHHHHH
Q psy8787 252 VLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGTAPDIAGKDLANPTALLLSAVMMLRH-LDLNTHADVI 330 (364)
Q Consensus 252 Vivt~Nl~GDIlSD~aa~l~G~lGl~psa~ig~~~~~fEp~HGsapdiaGk~~aNP~a~ils~ammL~~-lg~~~~a~~i 330 (364)
||||+|||||||||++|+++||+||+||+|+|++.+||||+|||||||||||+|||+|+|||++||||| ||++++|++|
T Consensus 237 Vivt~NlfGDIlSD~aa~l~GslGl~pSanig~~~~~fEpvHGSAPdiAGk~iANP~A~IlS~ammL~~~lg~~~~A~~I 316 (358)
T 1a05_A 237 VLLTGNMFGDILSDEASQLTGSIGMLPSASLGEGRAMYEPIHGSAPDIAGQDKANPLATILSVAMMLRHSLNAEPWAQRV 316 (358)
T ss_dssp EEEECHHHHHHHHHHHHHTTSCGGGCEEEEECSSCEEEEESSCCCGGGTTTTCSCCHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred EEEecCcccHhHHHHHHhhcCCccccceeeeCCCceeeecCCCChhHhcCCCccCcHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999999999999999999997679999999999999999999999999999999999 9999999999
Q ss_pred HHHHHHHHHcCccccCCCCC---C-CCHHHHHHHHHhC
Q psy8787 331 QKAALDTIKEGKYRTGDLGG---K-AKCSEFTNEICSK 364 (364)
Q Consensus 331 ~~Av~~~~~~g~~~T~Dlgg---~-~~T~e~~~av~~~ 364 (364)
++||.+++++|. +|+||+| + +||+||+|+|+++
T Consensus 317 e~Av~~~l~~g~-~T~Dl~g~g~~~~~T~e~~daV~~~ 353 (358)
T 1a05_A 317 EAAVQRVLDQGL-RTADIAAPGTPVIGTKAMGAAVVNA 353 (358)
T ss_dssp HHHHHHHHHTTC-CCGGGCCTTSCCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHcCC-cCcccccCCCCCcCHHHHHHHHHHH
Confidence 999999999995 8999943 6 8999999999974
No 21
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A*
Probab=100.00 E-value=2.4e-105 Score=801.54 Aligned_cols=338 Identities=30% Similarity=0.451 Sum_probs=313.6
Q ss_pred ccccccccccceeEeeccchhhhcccccCCCCCCCCccccCCCCcCHHHHHHHHHHHHhhc-------CCCceeEEEEee
Q psy8787 10 LKLPLQCNTVETISYLTLSELISAQYINTPSISQWSWRGLKVQGLGEFNLYANVRPCRSLE-------GYPTLYDDVDVV 82 (364)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~i~GDGIGp~EV~a~~r~Vl~a~-------g~~i~~~~vdig 82 (364)
++.| ++++||++.. +.++ + | ..|+|++|||||||| ||++++++||+++ +++++|+++++|
T Consensus 14 ~~~~---~~~~~i~~~~-~~~~---v---p--~~~~I~vipGDGIGp-EV~~~a~~Vl~a~~~~~~~~~~~i~~~~~~~G 80 (435)
T 1tyo_A 14 LSPP---PGGSLVEYSG-GSLR---V---P--DNPVVAFIRGDGVGP-EVVESALKVVDAAVKKVYGGSRRIVWWELLAG 80 (435)
T ss_dssp CCCC---TTCBCCEEET-TEEE---C---C--SSBEEEEECCSTTHH-HHHHHHHHHHHHHHHHHHTTSCCCEEEECCCS
T ss_pred ecCC---CCCCeEEecC-Ceec---C---C--CCCEEEEECCCCcCH-HHHHHHHHHHHHHHHhhcCCCcceEEEEEech
Confidence 4555 5699999763 3332 2 4 678999999999999 9999999999987 389999999999
Q ss_pred eeeecCCCCccccchhHHHHhhhcCEEEEccccc-------c----hhhhcccceeeeeeeccCCCCCCCC---CccEEE
Q psy8787 83 TIRENTEGEYSGIEHEIVDGVCNSNYATKWFSER-------G----ASVEFNLYANVRPCRSLEGYPTLYD---DVDVVT 148 (364)
Q Consensus 83 ~~re~~~G~Y~~lp~etl~~ik~~daiLkGav~~-------g----LR~~ldlyanvRP~~~~pg~~~~~~---~iD~vI 148 (364)
..+++++|+ ++|++++++++++|++||||++. + ||+.||||+|+|||+++ |+++|++ ++|+||
T Consensus 81 ~~~~~~~G~--~lp~etl~~~k~~da~LkGav~tP~~~~~~s~~l~LRk~LdlyanlRPv~~~-gv~splk~~~~vDivI 157 (435)
T 1tyo_A 81 HLAREKCGE--LLPKATLEGIRLARVALKGPLETPVGTGYRSLNVAIRQALDLYANIRPVRYY-GQPAPHKYADRVDMVI 157 (435)
T ss_dssp HHHHHHHSS--SSCHHHHHHHHHHSEEEECCCCCCTTSCTTHHHHHHHHHHTCCEEEEEEECC-SCCCSBTTGGGCEEEE
T ss_pred HHHHHhhCC--cCCHHHHHHHHhCCeEEECCccCCCcccccChhHHHHHHcCCEEEeEEEEec-CCCCCCCCcCCCcEEE
Confidence 988889997 89999999999999999999941 1 99999999999999999 9998885 599999
Q ss_pred EccCCCccccCceeee--------------------eCCEEEEEEEecHHHHHHHHHHHHHHHHhCCCCceEEEEeCccc
Q psy8787 149 IRENTEGEYSGIEHEI--------------------VDGVVQSIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIM 208 (364)
Q Consensus 149 vREnteg~Y~g~~~~~--------------------~~~~a~~~~~~t~~~~eriar~Af~~A~~~~~~~Vt~v~KaNv~ 208 (364)
|||||||+|+|+++.. .++++.+++++|+++++||+|+||+||++|+|++||+|||+|||
T Consensus 158 vREnTeg~Y~G~e~~~~~~~~~~v~~~~~~~~~~~~~~~~a~~~~~~T~~~~eRIar~AFe~A~~r~rkkVT~v~KaNVl 237 (435)
T 1tyo_A 158 FRENTEDVYAGIEWPHDSPEAARIRRFLAEEFGISIREDAGIGVKPISRFATRRLMERALEWALRNGNTVVTIMHKGNIM 237 (435)
T ss_dssp EEECSSSGGGCCEECTTSHHHHHHHHHHHHHHCCCCCTTEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEEECTTTS
T ss_pred EecCCCCeecccccccCCccccceeccchhhccccCCCCeEEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECCccc
Confidence 9999999999998753 24689999999999999999999999999888999999999999
Q ss_pred ccccHHHHHHHHHHhh-cCCC--------------------eeEeeEeHHHHHHHHhcCCCCccEEEeCCCcchhhhhhh
Q psy8787 209 RMSDGLFLRCCRDAAE-KFPE--------------------VKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMC 267 (364)
Q Consensus 209 ~~~~~lf~~~~~~va~-~yp~--------------------i~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~GDIlSD~a 267 (364)
+.|||+|+++|+|+++ +||+ |+++|++||+||||||++|++||||||+|||||||||++
T Consensus 238 k~tdGlf~~~~~eva~~eypd~~~~e~~~~~~~~~~~~~~~I~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDILSD~a 317 (435)
T 1tyo_A 238 KYTEGAFMRWAYEVALEKFREHVVTEQEVQEKYGGVRPEGKILVNDRIADNMLQQIITRPWDYQVIVAPNLNGDYISDAA 317 (435)
T ss_dssp TTTHHHHHHHHHHHHHHHSGGGEEEHHHHHHHSTTCCCTTCEEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhCCCcccccccccccccccccCCeEEEEeeeHHHHHHHHhhCCCCceEEEEcccchHHHHHHH
Confidence 9999999999999998 9999 999999999999999999999999999999999999999
Q ss_pred hhccCCCCcccccccCCCceeEeeccCCCCCccCCCCCChhHHHHHHHHHH-HhcCcHHHHHHHHHHHHHHHHcCccccC
Q psy8787 268 AGLVGGLGLTPSGNIGLNGALFESVHGTAPDIAGKDLANPTALLLSAVMML-RHLDLNTHADVIQKAALDTIKEGKYRTG 346 (364)
Q Consensus 268 a~l~G~lGl~psa~ig~~~~~fEp~HGsapdiaGk~~aNP~a~ils~ammL-~~lg~~~~a~~i~~Av~~~~~~g~~~T~ 346 (364)
|+++||+||+||+|+|++++||||+|||||||||||+|||+|+|||++||| ||||++++|++|++||.+++++|. +|+
T Consensus 318 A~l~GslGlapSanig~~~a~fEpvHGSAPdiAGk~iANP~A~IlS~amML~~hlg~~~~A~~Ie~Av~~~l~~g~-~T~ 396 (435)
T 1tyo_A 318 SALVGGIGMAAGMNMGDGIAVAEPVHGTAPKYAGKDLINPSAEILSASLLIGEFMGWREVKSIVEYAIRKAVQSKK-VTQ 396 (435)
T ss_dssp HHHTTCGGGCEEEEECSSCEEEEESSCCCGGGTTSSCSCCHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHTTC-CBH
T ss_pred HhhcCCcccCceeeECCCceeeecCCCChHHhcCCCCcCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcCC-cCc
Confidence 999999999999999999999999999999999999999999999999999 999999999999999999999996 899
Q ss_pred CCCC------CCCHHHHHHHHHhC
Q psy8787 347 DLGG------KAKCSEFTNEICSK 364 (364)
Q Consensus 347 Dlgg------~~~T~e~~~av~~~ 364 (364)
|||| .+||+||+|+|+++
T Consensus 397 Dlgg~~~g~~~~~T~e~~daV~~~ 420 (435)
T 1tyo_A 397 DLARHMPGVQPLRTSEYTETLIAY 420 (435)
T ss_dssp HHHTTSTTCCCBCHHHHHHHHHHH
T ss_pred cccccCCCCCCcCHHHHHHHHHHH
Confidence 9975 57999999999863
No 22
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1
Probab=100.00 E-value=2.6e-105 Score=799.63 Aligned_cols=335 Identities=32% Similarity=0.467 Sum_probs=312.0
Q ss_pred cccceeEeeccchhhhcccccCCCCCCCCccccCCCCcCHHHHHHHHHHHHhhc-------CCCceeEEEEeeeeeecCC
Q psy8787 17 NTVETISYLTLSELISAQYINTPSISQWSWRGLKVQGLGEFNLYANVRPCRSLE-------GYPTLYDDVDVVTIRENTE 89 (364)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~i~GDGIGp~EV~a~~r~Vl~a~-------g~~i~~~~vdig~~re~~~ 89 (364)
+.+|||++.. +.++ + | ..|+|.+|||||||| ||++++++||+++ +++++|+++++|..+++++
T Consensus 2 ~~~~~~~~~~-~~~~---v---p--~~~~I~vipGDGIGp-EI~~~a~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~ 71 (423)
T 1hqs_A 2 AQGEKITVSN-GVLN---V---P--NNPIIPFIEGDGTGP-DIWNAASKVLEAAVEKAYKGEKKITWKEVYAGEKAYNKT 71 (423)
T ss_dssp CSSBCCEEET-TEEE---C---C--SSBEEEEECCSTTHH-HHHHHHHHHHHHHHHHHHTTSCCCEEEECCCTHHHHHHH
T ss_pred CCCceEEecC-CeEe---C---C--CCCEEEEECCCCcCH-HHHHHHHHHHHHHHhhhcCCCCceEEEEEecCHHHHHhh
Confidence 5689999763 4332 2 4 678999999999999 9999999999987 3899999999999888899
Q ss_pred CCccccchhHHHHhhhcCEEEEcccc-------cc----hhhhcccceeeeeeeccCCCCCCCC---CccEEEEccCCCc
Q psy8787 90 GEYSGIEHEIVDGVCNSNYATKWFSE-------RG----ASVEFNLYANVRPCRSLEGYPTLYD---DVDVVTIRENTEG 155 (364)
Q Consensus 90 G~Y~~lp~etl~~ik~~daiLkGav~-------~g----LR~~ldlyanvRP~~~~pg~~~~~~---~iD~vIvREnteg 155 (364)
|+ ++|+++++.++++|++||||++ ++ ||+.||||+|+|||+++||+++|++ ++|+|||||||||
T Consensus 72 g~--~lp~etl~~~k~~da~lkGav~tP~~~~~~s~nl~LRk~LdlyanvRPv~~~pg~~splk~~~~vDivIvREnteg 149 (423)
T 1hqs_A 72 GE--WLPAETLDVIREYFIAIKGPLTTPVGGGIRSLNVALRQELDLFVCLRPVRYFTGVPSPVKRPEDTDMVIFRENTED 149 (423)
T ss_dssp SC--SSCHHHHHHHHHHCEEEECCCCCCSSSSSCCHHHHHHHHTTCCEEEEEEECCTTCCCSBSCGGGCEEEEEEECSCG
T ss_pred CC--cCcHHHHHHHHHCCEEEECCccCCCCcCcCChhHHHHHHcCCEEEEEEEeccCCCCCCCCCCCCCcEEEEecCCCC
Confidence 97 8999999999999999999994 11 9999999999999999999998875 6999999999999
Q ss_pred cccCceeee-----------------------eCCEEEEEEEecHHHHHHHHHHHHHHHHhCCCCceEEEEeCccccccc
Q psy8787 156 EYSGIEHEI-----------------------VDGVVQSIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSD 212 (364)
Q Consensus 156 ~Y~g~~~~~-----------------------~~~~a~~~~~~t~~~~eriar~Af~~A~~~~~~~Vt~v~KaNv~~~~~ 212 (364)
+|+|+++.. .++++.+++++|+++++||+|+||+||++|+|++||+|||+|||+.|+
T Consensus 150 ~Y~G~e~~~g~~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~T~~~~eRiar~AFe~A~~r~rkkVt~v~KaNVlk~t~ 229 (423)
T 1hqs_A 150 IYAGIEYAKGSEEVQKLISFLQNELNVNKIRFPETSGIGIKPVSEEGTSRLVRAAIDYAIEHGRKSVTLVHKGNIMKFTE 229 (423)
T ss_dssp GGGCCEECTTCHHHHHHHHHHHHHSCCCCCSCGGGEEEEEEEEEHHHHHHHHHHHHHHHHHHTCSEEEEEECTTTSTTTH
T ss_pred eecccccccCCccccceeccccccccccccccCCceEEEEEEEcHHHHHHHHHHHHHHHHHcCCCcEEEEECCccchhhh
Confidence 999998752 236889999999999999999999999998889999999999999999
Q ss_pred HHHHHHHHHHhh-cCCC--------------------------------eeEeeEeHHHHHHHHhcCCCCccEEEeCCCc
Q psy8787 213 GLFLRCCRDAAE-KFPE--------------------------------VKFEEKYLDTVCLNMVQDPTQYDVLVMPNLY 259 (364)
Q Consensus 213 ~lf~~~~~~va~-~yp~--------------------------------i~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~ 259 (364)
|+|+++|+|+++ +||+ |+++|++||+||||||++|++||||||+|||
T Consensus 230 Glf~~~~~eva~~eypd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~vD~~~mqlv~~P~~FDVivt~Nlf 309 (423)
T 1hqs_A 230 GAFKNWGYELAEKEYGDKVFTWAQYDRIAEEQGKDAANKAQSEAEAAGKIIIKDSIADIFLQQILTRPNEFDVVATMNLN 309 (423)
T ss_dssp HHHHHHHHHHHHHHHGGGEEEHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHCGGGCSEEEECHHH
T ss_pred HHHHHHHHHHHHHhCCCcccchhhhccccccccccccccccccccccCeEEEEEeeHHHHHHHHhhCCCCccEEEECCcc
Confidence 999999999998 9999 8999999999999999999999999999999
Q ss_pred chhhhhhhhhccCCCCcccccccC--CCceeEeeccCCCCCccCCCCCChhHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Q psy8787 260 GDILSDMCAGLVGGLGLTPSGNIG--LNGALFESVHGTAPDIAGKDLANPTALLLSAVMMLRHLDLNTHADVIQKAALDT 337 (364)
Q Consensus 260 GDIlSD~aa~l~G~lGl~psa~ig--~~~~~fEp~HGsapdiaGk~~aNP~a~ils~ammL~~lg~~~~a~~i~~Av~~~ 337 (364)
||||||++|+++||+||+||+|+| ++++||||+|||||||||||+|||+|+|||++|||||||+.++|++|++||.++
T Consensus 310 GDILSD~aA~l~GslGl~pSanigp~~~~alfEp~HGSAPdiAGk~iANP~A~IlS~amML~hlg~~~~A~~Ie~Av~~~ 389 (423)
T 1hqs_A 310 GDYISDALAAQVGGIGIAPGANINYETGHAIFEATHGTAPKYAGLDKVNPSSVILSGVLLLEHLGWNEAADLVIKSMEKT 389 (423)
T ss_dssp HHHHHHHHHHHTTCTTTCEEEEECTTTCCEEEEESCCCCGGGTTTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhcCCcccCccceecCCCCceEEecCCCChhhhCCCCCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999 777999999999999999999999999999999999999999999999999999
Q ss_pred HHcCccccCCCCC------CCCHHHHHHHHHhC
Q psy8787 338 IKEGKYRTGDLGG------KAKCSEFTNEICSK 364 (364)
Q Consensus 338 ~~~g~~~T~Dlgg------~~~T~e~~~av~~~ 364 (364)
+++|. +|+|||| .+||+||+|+|+++
T Consensus 390 l~~g~-~T~Dl~g~~~g~~~~~T~e~~daV~~~ 421 (423)
T 1hqs_A 390 IASKV-VTYDFARLMDGATEVKCSEFGEELIKN 421 (423)
T ss_dssp HHTTE-ECHHHHTTSSSCEECCHHHHHHHHHHT
T ss_pred HHcCC-cccccccccCCCCCcCHHHHHHHHHHh
Confidence 99996 7999976 68999999999975
No 23
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti}
Probab=100.00 E-value=2.2e-98 Score=750.47 Aligned_cols=316 Identities=17% Similarity=0.205 Sum_probs=291.7
Q ss_pred CCCCCccccCCCCcCHHHHHHHHHHHHhhcCCCceeEEEEeeeeeecCCCCccccchhHHHHhhhcCEEEEcccc-----
Q psy8787 41 ISQWSWRGLKVQGLGEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVCNSNYATKWFSE----- 115 (364)
Q Consensus 41 ~~~~~i~~i~GDGIGp~EV~a~~r~Vl~a~g~~i~~~~vdig~~re~~~G~Y~~lp~etl~~ik~~daiLkGav~----- 115 (364)
...+.|++|||||||| |||+++++||++++++++|+++|+|...++++|+ ++|++++++++++|++||||++
T Consensus 28 ~~~~~I~vipGDGIGp-EI~~~~~~vL~~~~~~i~~~~~~~G~~~~~~tg~--~lp~etl~aik~~da~LkGav~tP~~~ 104 (427)
T 3us8_A 28 KVANPVVELDGDEMTR-IIWQFIKDKLIHPYLDLDLEYYDLGVENRDATDD--QVTIDAANAIKKHGVGVKCATITPDEG 104 (427)
T ss_dssp ECCSCEEEEECCHHHH-HHHHHHHHHHTTTTEECCEEEEECCHHHHHHTTT--HHHHHHHHHHHHHSEEEECCCCCCCHH
T ss_pred cccceEEEEcCCcccH-HHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCC--cCCHHHHHHHHHCCEEEECCccCCCcc
Confidence 3468899999999999 9999999999999999999999999988889997 8999999999999999999983
Q ss_pred --------cc-------hhhhcccceeeeeeeccCCCCCCCC--CccEEEEccCCCccccCceeeee-------------
Q psy8787 116 --------RG-------ASVEFNLYANVRPCRSLEGYPTLYD--DVDVVTIRENTEGEYSGIEHEIV------------- 165 (364)
Q Consensus 116 --------~g-------LR~~ldlyanvRP~~~~pg~~~~~~--~iD~vIvREnteg~Y~g~~~~~~------------- 165 (364)
.+ ||+.||||+|+||| .+++++++.+ ++|+|||||||||+|+|+++...
T Consensus 105 ~~~e~~l~~~~~s~n~~LRk~LdlyanvRPv-~~~~ip~~~~~~~~DivIvREnteg~Y~g~e~~~~~~~~~~l~~~~~~ 183 (427)
T 3us8_A 105 RVEEFKLKKMWKSPNGTIRNILGGVIFREPI-ICKNVPRLVPGWTKPIIVGRHAFGDQYRATDFKFPGKGKLSIKFVGED 183 (427)
T ss_dssp HHHHHTCSSCCCCHHHHHHHHHCSEEEEEEC-CCTTSCCSSTTCCSCEEEEEECSSGGGGCEEEEECSSEEEEEEEEETT
T ss_pred ccccccccccccCchHHHHHHhCCeEEecce-eccCCCCCCCCCCCCEEEEEeCCCCccCCceeEEecCCcceeeeeccc
Confidence 11 89999999999999 6666665543 59999999999999999987643
Q ss_pred -------------CCEEEEEEEecHHHHHHHHHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhh-cCC----
Q psy8787 166 -------------DGVVQSIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAE-KFP---- 227 (364)
Q Consensus 166 -------------~~~a~~~~~~t~~~~eriar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~-~yp---- 227 (364)
++++ ...++|+++++||+|+||+||++|+ +|||+|||+|||+.|||+|+++|+|+++ +||
T Consensus 184 G~~~~~~~~~~~~~~va-~~~~~T~~~~eRiar~AFe~A~~r~-kkVt~v~KaNIlk~tdglfr~~~~eva~~eYp~~~~ 261 (427)
T 3us8_A 184 GQTIEHDVYDAPGAGVA-LAMYNLDESITEFARASFNYGLQRK-VPVYLSTKNTILKAYDGRFKDIFQKVFDEEFAAQFK 261 (427)
T ss_dssp SCEEEEEEEEESSCEEE-EEEEEEHHHHHHHHHHHHHHHHHHT-CCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHH
T ss_pred cccccccccccCCCcEE-EEEeeCHHHHHHHHHHHHHHHHHcC-CcEEEEECcccchhhhhHHHHHHHHHHHHhCccccC
Confidence 2344 4567899999999999999999984 7899999999999999999999999998 996
Q ss_pred --CeeEeeEeHHHHHHHHhcCCCCccEEEeCCCcchhhhhhhhhccCCCCcccccccCCCc--eeEeeccCCCCC-----
Q psy8787 228 --EVKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNG--ALFESVHGTAPD----- 298 (364)
Q Consensus 228 --~i~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~GDIlSD~aa~l~G~lGl~psa~ig~~~--~~fEp~HGsapd----- 298 (364)
+|+++|++||+||||||++|++| ||||+|||||||||++|+++|||||+||+|+|+++ +||||+||||||
T Consensus 262 ~~~I~~~~~~VD~~~mqlv~~P~~F-Vivt~NlfGDIlSD~aA~l~GslGl~pSanig~~~~~a~fEp~HGSAPd~~~~~ 340 (427)
T 3us8_A 262 AEKLWYEHRLIDDMVASALKWSGGY-VWACKNYDGDVQSDIVAQGFGSLGLMTSVLMTPDGKTVEAEAAHGTVTRHYRQH 340 (427)
T ss_dssp HTTCCEEEEEHHHHHHHHHHSCCCE-EEEECHHHHHHHHHHHHHHHSCTTSEEEEEECTTSCCEEEECCSCCCHHHHHHH
T ss_pred CCCeEEEEEEHHHHHHHHhhCCCCc-EEEeCCcCCcHHHHHHHHhcCChhhCceeEECCCCCeEEEeCCCCCcCCccchh
Confidence 99999999999999999999999 99999999999999999999999999999999876 999999999999
Q ss_pred ccCCCC-CChhHHHHHHHHHHHhcCc-------HHHHHHHHHHHHHHHHcCccccCCCCC-------CCCHHHHHHHHHh
Q psy8787 299 IAGKDL-ANPTALLLSAVMMLRHLDL-------NTHADVIQKAALDTIKEGKYRTGDLGG-------KAKCSEFTNEICS 363 (364)
Q Consensus 299 iaGk~~-aNP~a~ils~ammL~~lg~-------~~~a~~i~~Av~~~~~~g~~~T~Dlgg-------~~~T~e~~~av~~ 363 (364)
|||||+ |||+|+|||++|||||||+ .++|++|++||.+++++|. +|+|||| .+||+||+|+|++
T Consensus 341 iAGk~i~ANP~A~IlS~ammL~hlG~~~~~~~l~~~A~~Ie~Av~~~l~~g~-~T~Dlgg~~~~~~~~~~T~e~~daV~~ 419 (427)
T 3us8_A 341 QKGEETSTNSIASIFAWTRGLAHRAKLDGNAELAKFSETLERVCVDTVESGF-MTKDLALLIGPDQPWLSTTGFLDKIDE 419 (427)
T ss_dssp HTTCCCCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTC-CBHHHHHHHCTTCCCBCHHHHHHHHHH
T ss_pred cCCCCceeCHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHcCC-cCcccccccccCCcccCHHHHHHHHHH
Confidence 999998 9999999999999999997 7899999999999999996 8999988 7899999999986
Q ss_pred C
Q psy8787 364 K 364 (364)
Q Consensus 364 ~ 364 (364)
+
T Consensus 420 ~ 420 (427)
T 3us8_A 420 N 420 (427)
T ss_dssp H
T ss_pred H
Confidence 3
No 24
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A*
Probab=100.00 E-value=1.3e-97 Score=742.18 Aligned_cols=316 Identities=18% Similarity=0.183 Sum_probs=291.4
Q ss_pred CCCCccccCCCCcCHHHHHHHHHHHHhhcCCCceeEEEEeeeeeecCCCCccccchhHHHHhhhcCEEEEcccc--c---
Q psy8787 42 SQWSWRGLKVQGLGEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVCNSNYATKWFSE--R--- 116 (364)
Q Consensus 42 ~~~~i~~i~GDGIGp~EV~a~~r~Vl~a~g~~i~~~~vdig~~re~~~G~Y~~lp~etl~~ik~~daiLkGav~--~--- 116 (364)
..++|.+|||||||| ||+++++++|.+++++++|+++|+|...++++|+ ++|++++++++++|++||||++ .
T Consensus 5 ~~~~i~~i~GDgig~-ei~~~~~~vl~~~~~~~~~~~~~~G~~~~~~~g~--~lp~etl~~~k~~da~LkGav~tP~~~~ 81 (402)
T 2uxq_A 5 MKTPLVELDGDEMTR-VLWPLIKDKLLLPFIDLQTEYYDLGIEERDRTND--QITIDAAEAIKKYGVGVKNATITPNQDR 81 (402)
T ss_dssp CSSCEEEEECCHHHH-HHHHHHHHHHTTTTBCCCEEEEECSHHHHHHTTT--HHHHHHHHHHHHHSEEEECCCCCCCHHH
T ss_pred eecceEEecCCCccH-HHHHHHHHHHHhCCCCeEEEEEecCHHHHHhhCC--cCCHHHHHHHHhCCEEEECCccCCCccc
Confidence 357799999999999 9999999999999999999999999988889997 8999999999999999999993 1
Q ss_pred --------c-------hhhhcccceeeeeeeccCCCCCCC--CCccEEEEccCCCccccCceeeee--------------
Q psy8787 117 --------G-------ASVEFNLYANVRPCRSLEGYPTLY--DDVDVVTIRENTEGEYSGIEHEIV-------------- 165 (364)
Q Consensus 117 --------g-------LR~~ldlyanvRP~~~~pg~~~~~--~~iD~vIvREnteg~Y~g~~~~~~-------------- 165 (364)
+ ||+.||||+|+|||+ +|+++++. .++|+||+||||||+|+|+++...
T Consensus 82 ~~~~~~~~~~~s~~l~LR~~ldlyan~RPv~-~~~~~~~~~~~~~divIvRE~teg~Y~g~e~~~~~~g~~~~~~~~~~g 160 (402)
T 2uxq_A 82 VEEYGLKEQWKSPNATVRAMLDGTVFRKPIM-VKNIKPSVRSWQKPIVVGRHAYGDFYKNAEIFAEAGGKLEIVVTDKNG 160 (402)
T ss_dssp HHHHTCSSCCCCHHHHHHHHHCCEEEEEECC-CTTCCCSBTTCCSCCEEEEECSCGGGGCEEEEETTCEEEEEEEECTTS
T ss_pred CccccccccccCchHHHHHHhCCeEEEEEEE-cCCCCCCCCCCCCCeEEEeccCCCcccCcceeeccCCcceeeeeccCC
Confidence 1 999999999999998 69988765 359999999999999998876640
Q ss_pred -----------CCEEEEEEEecHHHHHHHHHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHh-hcCCC-----
Q psy8787 166 -----------DGVVQSIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAA-EKFPE----- 228 (364)
Q Consensus 166 -----------~~~a~~~~~~t~~~~eriar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va-~~yp~----- 228 (364)
.+.+....++|+++++||+|+||+||++| ++|||+|||+|||+.|||+|+++|+|++ ++||+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r-~~kVt~v~KaNVlk~sdglf~~~~~eva~~eypd~~~~~ 239 (402)
T 2uxq_A 161 KETRQTIMEVDEPAIVQGIHNTVASIGHFARACFEYSLDQ-KIDCWFATKDTISKQYDQRFKIIFEEIFAQEYKEKFAAA 239 (402)
T ss_dssp CEEEEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHH-TCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred ccccccccccCCCceEEEEEECHHHHHHHHHHHHHHHHHc-CCcEEEEECCCcchhhHHHHHHHHHHHHHHhCCCcccCC
Confidence 12344445799999999999999999998 5789999999999999999999999999 69999
Q ss_pred -eeEeeEeHHHHHHHHhcCCCCccEEEeCCCcchhhhhhhhhccCCCCcccccccCCCc-eeEeeccCCCCCc-----cC
Q psy8787 229 -VKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNG-ALFESVHGTAPDI-----AG 301 (364)
Q Consensus 229 -i~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~GDIlSD~aa~l~G~lGl~psa~ig~~~-~~fEp~HGsapdi-----aG 301 (364)
|+++|++||+||||||++|++| ||||+|||||||||++|+++||+||+||+|+|+++ +||||+||||||| ||
T Consensus 240 ~I~~~~~~vD~~~mqlv~~P~~f-Vivt~NlfGDIlSD~aA~l~GslGl~pSanig~~~~~lfEpvHGSAPdi~~~~~aG 318 (402)
T 2uxq_A 240 GIEYFYTLIDDVVARMMKTEGGM-LWACKNYDGDVMSDMVASAFGSLAMMSSVLVSPYGYFEYEAAHGTVQRHYYQHLKG 318 (402)
T ss_dssp TCCEEEEEHHHHHHHHTTCCCCS-EEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTSCEEEECCSCCCHHHHHHHHTT
T ss_pred eEEEEEEEHHHHHHHHccCCCce-EEEEcccchHHHHHHHHHhcCCccccccceecCCCCeEEeCCCCChhhhhhhhhcC
Confidence 9999999999999999999999 99999999999999999999999999999999988 8999999999998 99
Q ss_pred CCC-CChhHHHHHHHHHHHhcCcHH-------HHHHHHHHHHHHHHcCccccCCCCC--------CCCHHHHHHHHHhC
Q psy8787 302 KDL-ANPTALLLSAVMMLRHLDLNT-------HADVIQKAALDTIKEGKYRTGDLGG--------KAKCSEFTNEICSK 364 (364)
Q Consensus 302 k~~-aNP~a~ils~ammL~~lg~~~-------~a~~i~~Av~~~~~~g~~~T~Dlgg--------~~~T~e~~~av~~~ 364 (364)
||+ |||+|+|||++|||||||+.+ +|++|++||.+|+++|. +|+|||| .+||+||+|+|+++
T Consensus 319 k~~~ANP~A~IlS~ammL~~lg~~~~~~~l~~~A~~Ie~Av~~~l~~G~-~T~Dlgg~~~g~~~~~~~T~e~~daI~~~ 396 (402)
T 2uxq_A 319 ERTSTNPVALIYAWTGALRKRGELDGTPDLCAFCDSLEAITIECIESGY-MTGDLARICEPAAIKVLDSIEFIDELGKR 396 (402)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTE-ECHHHHTTCSSCCSEECCHHHHHHHHHHH
T ss_pred CCcccCcHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHHcCC-cCccccccCCCCCCCCcCHHHHHHHHHHH
Confidence 996 999999999999999999766 79999999999999995 8999976 58999999999863
No 25
>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3mas_B* 3map_A* 3mar_A* 3mas_A* 3inm_A* 2cmj_A* 2cmv_A*
Probab=100.00 E-value=1.9e-95 Score=728.93 Aligned_cols=315 Identities=19% Similarity=0.219 Sum_probs=288.3
Q ss_pred CCCccccCCCCcCHHHHHHHHHHHHhhcCCCceeEEEEeeeeeecCCCCccccchhHHHHhhhcCEEEEcccc--c----
Q psy8787 43 QWSWRGLKVQGLGEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVCNSNYATKWFSE--R---- 116 (364)
Q Consensus 43 ~~~i~~i~GDGIGp~EV~a~~r~Vl~a~g~~i~~~~vdig~~re~~~G~Y~~lp~etl~~ik~~daiLkGav~--~---- 116 (364)
.+.|.+|||||||| |||.+++++|..++++++|+++|+|..+++++|+ ++|++++++++++|++||||++ .
T Consensus 8 ~~~i~~l~GDgiGp-ei~~~~~~vl~~~~~~~~~~~~~~G~~~~~~~g~--~lp~etl~~ik~~da~LkGav~tP~~~~~ 84 (413)
T 1lwd_A 8 AKPVVEMDGDEMTR-IIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTND--QVTIDSALATQKYSVAVKCATITPDEARV 84 (413)
T ss_dssp SSCEEEEECCHHHH-HHHHHHHHHTTTTTEECCEEEEECSHHHHHHTTT--HHHHHHHHHHHHHSEEEECCCCCCCHHHH
T ss_pred cccEEEecCCChhH-HHHHHHHHHHHhCCCCeEEEEEecCHHHHhccCC--cCcHHHHHHHHHCCEEEECCccCCCcccC
Confidence 45699999999999 9999999999999999999999999988889997 8999999999999999999993 1
Q ss_pred ----------c----hhhhcccceeeeeeeccCCCCCCC--CCccEEEEccCCCccccCceeeee---------------
Q psy8787 117 ----------G----ASVEFNLYANVRPCRSLEGYPTLY--DDVDVVTIRENTEGEYSGIEHEIV--------------- 165 (364)
Q Consensus 117 ----------g----LR~~ldlyanvRP~~~~pg~~~~~--~~iD~vIvREnteg~Y~g~~~~~~--------------- 165 (364)
+ ||+.||||+|+|||+. ++++++. ..+|+||+||||||+|+|+++.+.
T Consensus 85 ~~~~~~~~~~s~~l~LR~~ldlyan~RPv~~-~~~~~~~~~~~~divIvRe~t~g~Y~g~d~~~~~e~~~~~~~~~~~g~ 163 (413)
T 1lwd_A 85 EEFKLKKMWKSPNGTIRNILGGTVFREPIIC-KNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPKDGS 163 (413)
T ss_dssp HHHTCSSCCCCHHHHHHHHHCSEEEEEECCC-TTSCCSSTTCCSCEEEEEECSSGGGGCEEEEECSSEEEEEEEEETTCC
T ss_pred ccccccccccCccHHHHHhcCCEEEEeeeec-cCCCCCCCCCCCceEEEecccCCccCCceeEeccCCcceeeEeccCCc
Confidence 1 9999999999999975 6665544 369999999999999998765431
Q ss_pred -----------CCEEEEEEEecHHHHHHHHHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHh-hcCCC-----
Q psy8787 166 -----------DGVVQSIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAA-EKFPE----- 228 (364)
Q Consensus 166 -----------~~~a~~~~~~t~~~~eriar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va-~~yp~----- 228 (364)
.+.+....++|+++++||+|+||+||++| ++|||+|||+|||+.|||||+++|+|++ ++||+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r-~~kVt~v~KaNVlk~sdglf~~~~~eva~~eypd~~~~~ 242 (413)
T 1lwd_A 164 SAKQWEVYNFPAGGVGMGMYNTDESISGFAHSCFQYAIQK-KWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDKY 242 (413)
T ss_dssp CCEEEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHH-TCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHHHT
T ss_pred ccccccccccCCCcEEEEEEEcHHHHHHHHHHHHHHHHHh-CCceEEEECCcchhhHHHHHHHHHHHHHHHhCCCcccCC
Confidence 12445556899999999999999999998 5789999999999999999999999999 69999
Q ss_pred -eeEeeEeHHHHHHHHhcCCCCccEEEeCCCcchhhhhhhhhccCCCCcccccccCCCc--eeEeeccCCCCCc-----c
Q psy8787 229 -VKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNG--ALFESVHGTAPDI-----A 300 (364)
Q Consensus 229 -i~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~GDIlSD~aa~l~G~lGl~psa~ig~~~--~~fEp~HGsapdi-----a 300 (364)
|+++|++||+||||||++|++| ||||+|||||||||++|+++|||||+||+|+|+++ +||||+||||||| |
T Consensus 243 ~I~~~~~~VD~~~mqlv~~P~~F-Vivt~NlfGDILSD~aA~l~GslGl~pSanig~~~~~~~fEpvHGSAPdi~~~~~a 321 (413)
T 1lwd_A 243 KIWYEHRLIDDMVAQVLKSSGGF-VWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQK 321 (413)
T ss_dssp TCCEEEEEHHHHHHHHHHSCCCE-EEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTSSCEEEECCSCCCHHHHHHHHT
T ss_pred eEEEEEEEHHHHHHHHhcCCCce-EEEecccccchHHHHHHhhcCCccccccceeCCCCCceEEeCCCCChhhhhhhhhc
Confidence 9999999999999999999999 99999999999999999999999999999999887 8999999999998 9
Q ss_pred CCCC-CChhHHHHHHHHHHHhcCcHH-------HHHHHHHHHHHHHHcCccccCCCC----C---------CCCHHHHHH
Q psy8787 301 GKDL-ANPTALLLSAVMMLRHLDLNT-------HADVIQKAALDTIKEGKYRTGDLG----G---------KAKCSEFTN 359 (364)
Q Consensus 301 Gk~~-aNP~a~ils~ammL~~lg~~~-------~a~~i~~Av~~~~~~g~~~T~Dlg----g---------~~~T~e~~~ 359 (364)
|||+ |||+|+|||++|||||||+.+ +|++|++||.+++++|. +|+||| | .+||+||+|
T Consensus 322 Gk~~~ANP~A~IlS~ammL~~lg~~~~~~~l~~~A~~Ie~Av~~~l~~G~-~T~Dlg~~~~G~~~~~~~~~~~~T~e~~d 400 (413)
T 1lwd_A 322 GRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETVESGA-MTKDLAGCIHGLSNVKLNEHFLNTSDFLD 400 (413)
T ss_dssp TCCCCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTC-CCHHHHHHHHCTTSCCBTTTBCCHHHHHH
T ss_pred CCCCccChHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHHcCC-cCcccccccCCcccccccCCCCCHHHHHH
Confidence 9996 999999999999999999875 89999999999999995 899996 5 579999999
Q ss_pred HHHhC
Q psy8787 360 EICSK 364 (364)
Q Consensus 360 av~~~ 364 (364)
+|+++
T Consensus 401 aV~~~ 405 (413)
T 1lwd_A 401 TIKSN 405 (413)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99863
No 26
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima}
Probab=100.00 E-value=5.8e-95 Score=723.03 Aligned_cols=315 Identities=19% Similarity=0.229 Sum_probs=287.9
Q ss_pred CCCccccCCCCcCHHHHHHHHHHHHhhcCCCceeEEEEeeeeeecCCCCccccchhHHHHhhhcCEEEEcccc--c----
Q psy8787 43 QWSWRGLKVQGLGEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVCNSNYATKWFSE--R---- 116 (364)
Q Consensus 43 ~~~i~~i~GDGIGp~EV~a~~r~Vl~a~g~~i~~~~vdig~~re~~~G~Y~~lp~etl~~ik~~daiLkGav~--~---- 116 (364)
...|.+|||||||| ||+.+++++|.+++++++|+++|+|..+++++|+ ++|++++++++++|++||||++ .
T Consensus 7 ~~~I~~l~GDgiG~-ei~~~v~~~l~~~~~~~~~~~~~~G~~~~~~~g~--~lp~etl~~ik~~da~lkGav~tP~~~~~ 83 (399)
T 1zor_A 7 KNPIVELDGDEMAR-VMWKMIKEKLILPYLDIQLVYFDLGIKKRDETDD--QITIEAAKAIKKYGVGVKCATITPDAERV 83 (399)
T ss_dssp CSCEEEEECCHHHH-HHHHHHHHHHTTTTEECCEEEEECCHHHHHHTTT--HHHHHHHHHHHHHSEEEECCCCCCCHHHH
T ss_pred cccEEEecCCcccH-HHHHHHHHHHHhCCCCeEEEEEeCCHHHHhccCC--cCcHHHHHHHHHCCEEEEcCccCCCcccC
Confidence 34588999999999 9999999999999999999999999988889997 8999999999999999999983 1
Q ss_pred -------c-------hhhhcccceeeeeeeccCCCCCCC--CCccEEEEccCCCccccCceeee----------e-----
Q psy8787 117 -------G-------ASVEFNLYANVRPCRSLEGYPTLY--DDVDVVTIRENTEGEYSGIEHEI----------V----- 165 (364)
Q Consensus 117 -------g-------LR~~ldlyanvRP~~~~pg~~~~~--~~iD~vIvREnteg~Y~g~~~~~----------~----- 165 (364)
+ ||+.||||+|+|||+ +++++++. ..+|+||+||||||+|.|+++.. .
T Consensus 84 ~~~~~~~~~~s~~l~LR~~ldlyan~RPv~-~~~~~~~~~~~~~divi~Re~t~g~Y~g~d~~~~~e~t~~~~y~~e~~~ 162 (399)
T 1zor_A 84 KEYNLKKAWKSPNATIRAYLDGTVFRKPIM-VKNVPPLVKRWKKPIIIGRHAYGDIYNAVEAKVEGPAEVELVVRNKENK 162 (399)
T ss_dssp HHHTCSSCCCCHHHHHHHHHTCEEEEEECC-BTTBCCSBTTCCSCCEEEECCSSGGGGCEEEEECSSEEEEEEEESSSCE
T ss_pred ccccccccccCchHHHHHHhCCEEEEEEee-cCCCCCcccCcCccceeeecccCCCcCCceeEecCCCcceeeEeccccc
Confidence 1 999999999999998 88887665 35999999999999999986421 0
Q ss_pred --------CCEEEEEEEecHHHHHHHHHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhh----cCCC--eeE
Q psy8787 166 --------DGVVQSIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAE----KFPE--VKF 231 (364)
Q Consensus 166 --------~~~a~~~~~~t~~~~eriar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~----~yp~--i~~ 231 (364)
.+.+....++|+++++||+|+||+||++|+ +|||+|||+|||+.|||+|+++|+|+++ +||+ |++
T Consensus 163 ~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r~-~kVt~v~KaNvlk~sdglf~~~~~eva~~~~~~yp~~~I~~ 241 (399)
T 1zor_A 163 TLLVHKFEGNGVVMAMHNLEKSIRSFAQSCINYAISEK-VDIWFATKDTISKVYHAYFKDIFQEEVDKRKEELEKAGVNY 241 (399)
T ss_dssp EEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHHT-CCEEEEECTTTCTTHHHHHHHHHHHHHHHTHHHHHHTTCCE
T ss_pred cceeeccCCceEEEEEEecHHHHHHHHHHHHHHHHHhC-CeEEEEECcccHHHHHHHHHHHHHHHHHhhcccCCCCcEEE
Confidence 123444457899999999999999999984 6899999999999999999999999997 8995 999
Q ss_pred eeEeHHHHHHHHhcCCCCccEEEeCCCcchhhhhhhhhccCCCCcccccccCCCc-eeEeeccCCCCC-----ccCCCC-
Q psy8787 232 EEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNG-ALFESVHGTAPD-----IAGKDL- 304 (364)
Q Consensus 232 ~~~~vD~~~~~lv~~P~~fdVivt~Nl~GDIlSD~aa~l~G~lGl~psa~ig~~~-~~fEp~HGsapd-----iaGk~~- 304 (364)
+|++||+||||||++|++| ||||+|||||||||++|+++||+||+||+|+|+++ +||||+|||||| |||||+
T Consensus 242 ~~~~vD~~~mqlv~~P~~f-Vivt~NlfGDIlSD~aA~l~GslGl~pSanig~~~~~~fEpvHGSAPdi~~~~iaGk~~~ 320 (399)
T 1zor_A 242 RYMLIDDAAAQILRSEGGM-LWACMNYEGDIMSDMIASGFGSLGLMTSVLVSPDGVYEFEAAHGTVRRHYYRYLKGEKTS 320 (399)
T ss_dssp EEEEHHHHHHHHHHSCCCS-EEEECHHHHHHHHHHHHHHHCCGGGEEEEEECTTCCEEEEESSCCCHHHHHHHTTTCCCC
T ss_pred EEEEHHHHHHHhccCCCce-EEEEccchHHHHHHHHHHhcCCccccceeEecCCCCeEEeCCCCcccccchhhhcCCCCc
Confidence 9999999999999999999 99999999999999999999999999999999988 899999999999 799995
Q ss_pred CChhHHHHHHHHHHHhcCcH-------HHHHHHHHHHHHHHHcCccccCCCCC--------CCCHHHHHHHHHhC
Q psy8787 305 ANPTALLLSAVMMLRHLDLN-------THADVIQKAALDTIKEGKYRTGDLGG--------KAKCSEFTNEICSK 364 (364)
Q Consensus 305 aNP~a~ils~ammL~~lg~~-------~~a~~i~~Av~~~~~~g~~~T~Dlgg--------~~~T~e~~~av~~~ 364 (364)
|||+|+|||++|||+|||+. ++|++|++||.+++++|. +|+|||| .+||+||+|+|+++
T Consensus 321 ANP~A~IlS~ammL~~lg~~~~~~~l~~~A~~Ie~Av~~~l~~g~-~T~Dlgg~~~g~~~~~~~T~e~~daV~~~ 394 (399)
T 1zor_A 321 TNPTASIFAWTGAIRKRGELDGTPEVCEFADKLEKAVINTIESGV-ITKDLQPFTEPPIDKYVTLEEFIDEVKKN 394 (399)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTC-CCGGGGGGCSSCCCCCCCHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHhcCcccccchHHHHHHHHHHHHHHHHHcCC-cCccccccCCCCCCCCCCHHHHHHHHHHH
Confidence 99999999999999999965 579999999999999995 8999975 48999999999863
No 27
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A
Probab=100.00 E-value=3.7e-94 Score=715.11 Aligned_cols=316 Identities=16% Similarity=0.192 Sum_probs=273.8
Q ss_pred CCCCccccCCCCcCHHHHHHHHHHHHhhcCCCceeEEEEeeeeeecCCCCccccchhHHHHhhhcCEEEEcccc------
Q psy8787 42 SQWSWRGLKVQGLGEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVCNSNYATKWFSE------ 115 (364)
Q Consensus 42 ~~~~i~~i~GDGIGp~EV~a~~r~Vl~a~g~~i~~~~vdig~~re~~~G~Y~~lp~etl~~ik~~daiLkGav~------ 115 (364)
..+.|.+|||||||| |++..+++++..++++++|+++|+|...++++|+ .+|++++++++++|++||||++
T Consensus 6 ~~~~i~~i~GDei~~-e~~~~i~~v~~~~~~~i~~~~~d~G~~~~~~tg~--~lp~etl~aik~~~v~lkGa~~tP~~~~ 82 (402)
T 4aoy_A 6 MKVPLVEMDGDEMTR-IIWRLIKENLLEPYIELNTEYYDLGLENRDKTED--QVTIDAARAIQKYGVGVKCATITPNAQR 82 (402)
T ss_dssp CSSCEEEEECCHHHH-HHHHHHHHHHTTTTEECCEEEEECCHHHHHHHTT--HHHHHHHHHHHHHSEEEECCCCCCCHHH
T ss_pred ccCcEEEECCCchHH-HHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCC--cCCHHHHHHHHHCCEEEECcccCCCccc
Confidence 356789999999999 9999999999999999999999999988888996 8999999999999999999983
Q ss_pred -------cc-------hhhhcccceeeeeeeccCCCCCCCC--CccEEEEccCCCccccCceeeee------------CC
Q psy8787 116 -------RG-------ASVEFNLYANVRPCRSLEGYPTLYD--DVDVVTIRENTEGEYSGIEHEIV------------DG 167 (364)
Q Consensus 116 -------~g-------LR~~ldlyanvRP~~~~pg~~~~~~--~iD~vIvREnteg~Y~g~~~~~~------------~~ 167 (364)
++ ||+.||||+|+||| ++||++++++ ++|+|||||||||+|+|++++.. +|
T Consensus 83 ~~~~~l~~~~~s~n~~LR~~Ldlyan~rPv-~~~~i~~~~~~~~~DivIvREnteg~Y~g~e~~~~~~~~~~~~~~~~~g 161 (402)
T 4aoy_A 83 VEEYNLKKMWKSPNGTIRAILDGTVFRAPI-VVNSIKPFVKGWKKPISIARHAYGDVYKNVEYYVPSAGKAELVFTSENG 161 (402)
T ss_dssp HHHTTCSSCCCCHHHHHHHHHTCEEEEEEC-CCTTSCCSBTTCCBCCEEEEC------CCEEEEECSCEEEEEEEEETTS
T ss_pred cccccccccccChHHHHHHHhCCeEEeeeE-eccCCCCcCCCCCCCEEEEEeccCCeecCceeeccCccceeeeeeccCC
Confidence 11 99999999999999 8999998876 69999999999999999988652 11
Q ss_pred -------------EEEEEEEecHHHHHHHHHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhh-cCC------
Q psy8787 168 -------------VVQSIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAE-KFP------ 227 (364)
Q Consensus 168 -------------~a~~~~~~t~~~~eriar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~-~yp------ 227 (364)
.+.....+|+++++||+|+||+||++|+ ++||+|||+|||+.+||+|+++|+|+++ +||
T Consensus 162 ~~~~~~~~~~~~~gv~~~~~~t~~~~eRiar~AF~~A~~~~-~~vt~v~KaNilk~tdglf~~~~~eva~~eyp~~~~~~ 240 (402)
T 4aoy_A 162 EVSRQTIHEFDGPGVIMGMHNTDKSIRSFARACFNYALDMN-QDLWFSTKDTISKTYDHRFKDIFQEIYENEYKEKFEAK 240 (402)
T ss_dssp CEEEEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHHT-CCEEEEECTTTSHHHHHHHHHHHHHHHHHHTHHHHHHT
T ss_pred cccccccccccCCeeEEEEEecHHHHHHHHHHHHHHHHHcC-CcEEEEECCccchhhhhHHHHHHHHHHHHhCcccccCC
Confidence 2334466789999999999999999986 7999999999999999999999999998 998
Q ss_pred CeeEeeEeHHHHHHHHhcCCCCccEEEeCCCcchhhhhhhhhccCCCCcccccccCCCc-eeEeeccCCCCC-----ccC
Q psy8787 228 EVKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNG-ALFESVHGTAPD-----IAG 301 (364)
Q Consensus 228 ~i~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~GDIlSD~aa~l~G~lGl~psa~ig~~~-~~fEp~HGsapd-----iaG 301 (364)
+|+++|++||+||||||++|++| ||||+|||||||||++|+++||+||+||+|+|+++ ++|||+|||||| |||
T Consensus 241 ~i~~~~~~vD~~~~~lv~~P~~f-Vivt~Nl~GDIlSD~~A~l~GslGl~psanig~~~~~~fEp~HGSApd~~~~~iaG 319 (402)
T 4aoy_A 241 NLQYFYTLIDDAVARIIRSEGGM-VWACKNYDGDVMSDMVASAFGSLAMMTSVLVSPDGKYEFEAAHGTVTRHYYKHLKG 319 (402)
T ss_dssp TCCEEEEEHHHHHHHHHTSCBCS-EEECCC-CHHHHHHHHHHHHSCTTSEEEEEECTTCCEEEEC---------------
T ss_pred CeEEEEEEHHHHHHHHhhCCCCc-EEEECCcchHHHHHHHHHhcCchhhccccccCCCCceEEeeccCCccccchhhccC
Confidence 99999999999999999999999 99999999999999999999999999999999765 899999999999 899
Q ss_pred CCC-CChhHHHHHHHHHHHhcCc-------HHHHHHHHHHHHHHHHcCccccCCCCCCC--------CHHHHHHHHHhC
Q psy8787 302 KDL-ANPTALLLSAVMMLRHLDL-------NTHADVIQKAALDTIKEGKYRTGDLGGKA--------KCSEFTNEICSK 364 (364)
Q Consensus 302 k~~-aNP~a~ils~ammL~~lg~-------~~~a~~i~~Av~~~~~~g~~~T~Dlgg~~--------~T~e~~~av~~~ 364 (364)
|++ |||+|+|||++|||+|+|+ .++|++|++||.+++++|+ +|+||||.+ ||+||+|+|+++
T Consensus 320 k~~~aNP~A~Ils~a~mL~~~g~~~~~~~l~~~A~~ie~Av~~~l~~g~-~T~Dlgg~~~~~~~~~~~T~ef~~av~~~ 397 (402)
T 4aoy_A 320 EETSTNSMATIFAWTGALKKRGELDGIKELVDFATKLEQASVQTIENGV-MTKDLASLSEVPEKKIVNTEDFLKEIRKT 397 (402)
T ss_dssp --CCCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTE-EEHHHHTTCCCSCCEEECHHHHHHHHHHH
T ss_pred CCcCcCcHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHcCC-CCcccccccccCCCCCcCHHHHHHHHHHH
Confidence 997 9999999999999999986 6899999999999999996 899999876 999999999863
No 28
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A*
Probab=100.00 E-value=2e-93 Score=716.30 Aligned_cols=315 Identities=17% Similarity=0.217 Sum_probs=285.1
Q ss_pred CCCccccCCCCcCHHHHHHHHHHHHhhcCCCceeEEEEeeeeeecCCCCccccchhHHHHhhhcCEEEEcccc-----c-
Q psy8787 43 QWSWRGLKVQGLGEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVCNSNYATKWFSE-----R- 116 (364)
Q Consensus 43 ~~~i~~i~GDGIGp~EV~a~~r~Vl~a~g~~i~~~~vdig~~re~~~G~Y~~lp~etl~~ik~~daiLkGav~-----~- 116 (364)
.++|.+|||||||| ||+.++.+.+..++++++|+++++|..+++++|+ ++|++++++++++|++||||++ +
T Consensus 22 ~~~I~~l~GDgig~-evl~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~--~lp~et~~ai~~~da~lkGav~tP~~~~~ 98 (427)
T 2qfy_A 22 KQPVVELDGDEMTR-IIWDKIKKKLILPYLDVDLKYYDLSVESRDATSD--KITQDAAEAIKKYGVGIKCATITPDEARV 98 (427)
T ss_dssp SSCEEEEECCHHHH-HHHHHHHHHHTTTTEECCEEEEECSHHHHHHTTT--HHHHHHHHHHHHHSEEEECCCCCCCHHHH
T ss_pred eeeEEEecCCCHHH-HHHHHHHHHhccCCCceEEEEEecChHHHhccCC--cCcHHHHHHHHHCCEEEECCcCCCCCccc
Confidence 47899999999999 9999999988888899999999999988889997 8999999999999999999983 1
Q ss_pred -------c-------hhhhcccceeeeeeec--cCC----CCCC-----------CCCccEEEEccCCCcccc------C
Q psy8787 117 -------G-------ASVEFNLYANVRPCRS--LEG----YPTL-----------YDDVDVVTIRENTEGEYS------G 159 (364)
Q Consensus 117 -------g-------LR~~ldlyanvRP~~~--~pg----~~~~-----------~~~iD~vIvREnteg~Y~------g 159 (364)
+ ||+.||||+|+|||+. +|+ +++| +.++|+|||||||||+|+ |
T Consensus 99 ~e~~l~~~~~s~~~~lR~~ldlyan~RP~~~~~~~~l~~g~~~pl~i~R~~~g~~y~~~D~vivREnteg~Y~~~e~teG 178 (427)
T 2qfy_A 99 KEFNLHKMWKSPNGTIRNILGGTVFREPIVIPRIPRLVPRWEKPIIIGRHAHGDQYKATDTLIPGPGSLELVYKPSDPTT 178 (427)
T ss_dssp HHTTCSSCCCCHHHHHHHHHCSEEEEEECCCTTSCCSSTTCCEEEEEEEECSSGGGGCEEEEECSSEEEEEEEEESCTTT
T ss_pred chhhhcccccchHHHHHHhcCCEEEecccccccchhhccCCCCCeeEeecccCCccCCeeEEEeccCccceeeeccccCC
Confidence 1 8999999999999875 654 4444 367999999999999998 5
Q ss_pred c---eeee----eCCEEEEEEEecHHHHHHHHHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHh-hcCCC---
Q psy8787 160 I---EHEI----VDGVVQSIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAA-EKFPE--- 228 (364)
Q Consensus 160 ~---~~~~----~~~~a~~~~~~t~~~~eriar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va-~~yp~--- 228 (364)
. ++.. ..+++.. .++|+++++||+|+||+||++| ++|||+|||+|||+.|||||+++|+||+ ++||+
T Consensus 179 ~~~~~~~~~~~~~~~v~~~-~~~T~~~ieRIar~AFe~A~~r-~~kVt~v~KaNVlk~s~glfr~v~~eva~~eYpd~~~ 256 (427)
T 2qfy_A 179 AQPQTLKVYDYKGSGVAMA-MYNTDESIEGFAHSSFKLAIDK-KLNLFLSTKNTILKKYDGRFKDIFQEVYEAQYKSKFE 256 (427)
T ss_dssp SCCEEEEEEEESSCEEEEE-EEEEHHHHHHHHHHHHHHHHHH-TCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHH
T ss_pred ccccccccccCCCceEEEE-EEEcHHHHHHHHHHHHHHHHHh-CCceEEEECCccchhhhHHHHHHHHHHHHHhCCCccc
Confidence 2 2222 1334444 4899999999999999999998 4689999999999999999999999999 79999
Q ss_pred ---eeEeeEeHHHHHHHHhcCCCCccEEEeCCCcchhhhhhhhhccCCCCcccccccCCCc--eeEeeccCCCC-----C
Q psy8787 229 ---VKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNG--ALFESVHGTAP-----D 298 (364)
Q Consensus 229 ---i~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~GDIlSD~aa~l~G~lGl~psa~ig~~~--~~fEp~HGsap-----d 298 (364)
|+++|++||+||||||++|++| ||||+|||||||||++|+++|||||+||+|+|+++ ++|||+||||| |
T Consensus 257 ~~~I~~e~~~VD~~amqlV~~P~~F-Vivt~NlfGDILSD~aA~l~GslGl~pSanig~~~~~~~fEpvHGSAPdi~~~d 335 (427)
T 2qfy_A 257 QLGIHYEHRLIDDMVAQMIKSKGGF-IMALKNYDGDVQSDIVAQGFGSLGLMTSILVTPDGKTFESEAAHGTVTRHYRKY 335 (427)
T ss_dssp HHTCCEEEEEHHHHHHHHHHSCEEE-EEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTSCCEEEECCSCCCHHHHHHH
T ss_pred CCeEEEEEEEHHHHHHHHHhCCCce-EEEECccchHHHHHHHHHhcCcccccceeEeCCCCceeEecCCCCCcccccchh
Confidence 9999999999999999999999 99999999999999999999999999999999987 89999999999 7
Q ss_pred ccCCCC-CChhHHHHHHHHHHHhcCcH-------HHHHHHHHHHHHHHH-cCccccCCCCC---------CCCHHHHHHH
Q psy8787 299 IAGKDL-ANPTALLLSAVMMLRHLDLN-------THADVIQKAALDTIK-EGKYRTGDLGG---------KAKCSEFTNE 360 (364)
Q Consensus 299 iaGk~~-aNP~a~ils~ammL~~lg~~-------~~a~~i~~Av~~~~~-~g~~~T~Dlgg---------~~~T~e~~~a 360 (364)
|||||+ |||+|+|||++|||||||+. ++|++|++||.+|++ +|. +|+|||| .+||+||+|+
T Consensus 336 iAGk~~~ANP~A~IlS~ammL~~lg~~~~~~~l~~~A~~Ie~Av~~~l~~~G~-~T~Dlgg~~g~~~~~~~~~T~e~~da 414 (427)
T 2qfy_A 336 QKGEETSTNSIASIFAWSRGLLKRGELDNTPALCKFANILESATLNTVQQDGI-MTKDLALACGNNERSAYVTTEEFLDA 414 (427)
T ss_dssp HTTCCCCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTCC-CCHHHHHHTTCCSGGGCCCHHHHHHH
T ss_pred hcCCCCccCcHHHHHHHHHHHHHhCcccCcchhHHHHHHHHHHHHHHHHhCCC-ccccccccCCccccCCCCCHHHHHHH
Confidence 899995 99999999999999999976 899999999999999 995 8999974 4799999999
Q ss_pred HHhC
Q psy8787 361 ICSK 364 (364)
Q Consensus 361 v~~~ 364 (364)
|+++
T Consensus 415 V~~~ 418 (427)
T 2qfy_A 415 VEKR 418 (427)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9863
No 29
>3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD-DEPE dehydrogenase, metal-binding, NAD, NADP, oxidoreductase, PY biosynthesis; HET: SUC; 1.70A {Yersinia pestis} SCOP: c.77.1.3 PDB: 1ps6_A* 1ptm_A 1ps7_A 1r8k_A
Probab=97.20 E-value=0.0017 Score=62.99 Aligned_cols=136 Identities=14% Similarity=0.073 Sum_probs=83.0
Q ss_pred EecHHHHHHHHHHHHHHHHh-CC--CCceEEE----EeCcc---cccccHHHHHHHHHHhhcCCCeeE-eeEeHHHHHHH
Q psy8787 174 LITEEASSRVAEFAFEYAKT-NN--RSKVTAV----HKANI---MRMSDGLFLRCCRDAAEKFPEVKF-EEKYLDTVCLN 242 (364)
Q Consensus 174 ~~t~~~~eriar~Af~~A~~-~~--~~~Vt~v----~KaNv---~~~~~~lf~~~~~~va~~yp~i~~-~~~~vD~~~~~ 242 (364)
.+|.+.+.+.++.+.+--++ -| +.|+.+. |-.+- -+......+...++..++ ++.+ -.+-.|++-.+
T Consensus 179 ~it~e~i~~~i~~~~~~l~~~fGi~~PrIAV~gLNPHAGE~G~~G~EE~~iI~PAi~~lr~~--Gi~~~GP~paDt~F~~ 256 (334)
T 3lxy_A 179 AITQASLHEVITILDNDLKTKFGITQPQIYVCGLNPHAGEGGHMGHEEIDTIIPALNTLRQQ--GINLIGPLPADTLFQP 256 (334)
T ss_dssp HCCHHHHHHHHHHHHHHHHHTSCCSSCCEEEECSSGGGGGGGTTCSHHHHTHHHHHHHHHHT--TCCEEEEECHHHHTSH
T ss_pred hCCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCCCCCCCCCchhHHHHHHHHHHHHHC--CCceeCCCChHHhcCh
Confidence 46888888888887776554 23 3466665 21110 011112334455555454 5554 45568887655
Q ss_pred HhcCCCCccEEEeCCCcchhhhhhhhhccCCCCcccccccCCC--ceeEeeccCCCCCccCCCCCChhHHHHHHHHHHH
Q psy8787 243 MVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLN--GALFESVHGTAPDIAGKDLANPTALLLSAVMMLR 319 (364)
Q Consensus 243 lv~~P~~fdVivt~Nl~GDIlSD~aa~l~G~lGl~psa~ig~~--~~~fEp~HGsapdiaGk~~aNP~a~ils~ammL~ 319 (364)
-.+ +.||++|+.... ++---.--+++--+.|+--+ .----|.||||-||||||+|||.+|+-|.-+..+
T Consensus 257 ~~~--~~~D~vlaMYHD------QGlip~K~l~F~~gVNvTlGLP~iRTS~DHGTAfDIAGkG~A~~~S~~~Ai~~A~~ 327 (334)
T 3lxy_A 257 KYL--QHADAVLAMYHD------QGLPVLKYQGFGRAVNITLGLPFIRTSVDHGTALELAATGTADVGSFITALNLAIK 327 (334)
T ss_dssp HHH--TTCSEEEESSHH------HHHHHHHHHHTTCCEEEEESSSSCEEEESSCCCGGGTTTTCSCCHHHHHHHHHHHH
T ss_pred hhh--ccCCEEEEcccc------hhhHhHHhcccCccEEEecCCCeeeecCCCCcchhhccCCCCChHHHHHHHHHHHH
Confidence 544 799999998874 33322333344445555322 2234579999999999999999999877765443
No 30
>2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase; 1.75A {Corynebacterium glutamicum} PDB: 3mbc_A*
Probab=96.87 E-value=0.018 Score=58.79 Aligned_cols=183 Identities=17% Similarity=0.165 Sum_probs=124.3
Q ss_pred eeeeeCCEEEEEEEecHHHHHHHHHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhhcC--CCeeEeeEe-HH
Q psy8787 161 EHEIVDGVVQSIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKF--PEVKFEEKY-LD 237 (364)
Q Consensus 161 ~~~~~~~~a~~~~~~t~~~~eriar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~y--p~i~~~~~~-vD 237 (364)
+|.+..|-.+..+-.-...++.+++.|...|+..|-.-|.-.|+.-. -|.-.-+-+++.-++| .+.+++-+- ++
T Consensus 443 eh~Ve~GDIwRmcq~KDapI~DWVkLAV~Rar~sg~pavFWLD~~Ra---HDa~lI~kV~~yL~~hdt~GLdi~Im~p~~ 519 (738)
T 2b0t_A 443 EHDVEANDIWRACQVKDAPIQDWVKLAVTRSRLSGMPAVFWLDPERA---HDRNLASLVEKYLADHDTEGLDIQILSPVE 519 (738)
T ss_dssp EEEECTTCEEEEEEECHHHHHHHHHHHHHHHHHHCCCEEEECCTTCH---HHHHHHHHHHHHHTTSCCTTCCEEEECHHH
T ss_pred eccccCCcchhhhhccCchHHHHHHHHHHHHHhcCCCeEEeeCCCCc---cHHHHHHHHHHHHHhcCCCCCceEeeCHHH
Confidence 56665665555555556679999999999999987555555554321 2333333334333444 356676665 66
Q ss_pred HHHHHHhcCCCCcc-EEEeCCCcchhhhhhhhh--ccCCCC---cccccccCCCceeEee-ccCCCCCcc------CCCC
Q psy8787 238 TVCLNMVQDPTQYD-VLVMPNLYGDILSDMCAG--LVGGLG---LTPSGNIGLNGALFES-VHGTAPDIA------GKDL 304 (364)
Q Consensus 238 ~~~~~lv~~P~~fd-Vivt~Nl~GDIlSD~aa~--l~G~lG---l~psa~ig~~~~~fEp-~HGsapdia------Gk~~ 304 (364)
++-..|-+=-.+-| +=||.|..=|+|+|+.-- |--|-= +.|=. .+++|||. +-||||+.+ |-=.
T Consensus 520 A~~~slerir~G~dTISVTGNVLRDYLTDLFPIlELGTSAKMLSIVPLm---~GGGLfETGAGGSAPKHVqQ~~eEnhLR 596 (738)
T 2b0t_A 520 ATQLSIDRIRRGEDTISVTGNVLRDYNTDLFPILELGTSAKMLSVVPLM---AGGGLFETGAGGSAPKHVQQVQEENHLR 596 (738)
T ss_dssp HHHHHHHHHHTTCCCEEEECHHHHHHHHHHHHHHHHSCSSSCEEEEEBT---TSCEEEECCSSCCCHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHcCCCeEEeechhhhhhccccchhhhhccchhHhhhcccc---cCCccccCCCCcCchHHHHHHHHcCccc
Confidence 66655544444556 779999999999999863 222222 22322 35699999 889999964 3347
Q ss_pred CChhHHHHHHHHHHHhcCcH-------HHHHHHHHHHHHHHHcCccccCCCC
Q psy8787 305 ANPTALLLSAVMMLRHLDLN-------THADVIQKAALDTIKEGKYRTGDLG 349 (364)
Q Consensus 305 aNP~a~ils~ammL~~lg~~-------~~a~~i~~Av~~~~~~g~~~T~Dlg 349 (364)
=+.+|-+|+.+--|+||+.. --|+.+.+|..+.|.+++.-.+-.|
T Consensus 597 WDSLGEFlALa~Sle~l~~~~~N~kA~vLa~tLD~At~~~L~n~KSPsRkvG 648 (738)
T 2b0t_A 597 WDSLGEFLALAESFRHELNNNGNTKAGVLADALDKATEKLLNEEKSPSRKVG 648 (738)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTTCSCCSSTT
T ss_pred hhhHHHHHHHHHhHHHHHhhcCChHHHHHHHHHHHHHHHHHhCCCCCCcccC
Confidence 78999999999999998752 3488999999999999875455554
No 31
>1itw_A Isocitrate dehydrogenase; greece KEY motif, oxidoreductase; HET: ICT; 1.95A {Azotobacter vinelandii} SCOP: c.77.1.2 PDB: 1j1w_A*
Probab=96.86 E-value=0.018 Score=58.84 Aligned_cols=183 Identities=17% Similarity=0.214 Sum_probs=124.2
Q ss_pred eeeeeCCEEEEEEEecHHHHHHHHHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhhcC--CCeeEeeEe-HH
Q psy8787 161 EHEIVDGVVQSIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKF--PEVKFEEKY-LD 237 (364)
Q Consensus 161 ~~~~~~~~a~~~~~~t~~~~eriar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~y--p~i~~~~~~-vD 237 (364)
+|.+..|-.+..+-.-...++.+++.|...|+..|-.-|.-.|+.-. -|.-.-+-+++.-++| .+.+++-+- ++
T Consensus 447 eh~Ve~GDIwRmcq~KDapI~DWVkLAV~Rar~sg~pavFWLD~~Ra---HDa~lI~kV~~yL~~hdt~GLdi~Im~p~~ 523 (741)
T 1itw_A 447 EQSVEAGDIWRMCQAKDAPIQDWVKLAVNRARATNTPAVFWLDPARA---HDAQVIAKVERYLKDYDTSGLDIRILSPVE 523 (741)
T ss_dssp EEEECTTCEEEEEEECHHHHHHHHHHHHHHHHHHTCCEEEECCTTSH---HHHHHHHHHHHHHTTSCCTTCCEEEECHHH
T ss_pred EccccCCcchhhhhccCchHHHHHHHHHHHHHhcCCCeEEeeCCCCc---cHHHHHHHHHHHHHhcCCCCCceEeeCHHH
Confidence 56665665555555556679999999999999987555555554321 2333333334333444 356676665 66
Q ss_pred HHHHHHhcCCCCcc-EEEeCCCcchhhhhhhhh--ccCCCC---cccccccCCCceeEee-ccCCCCCcc------CCCC
Q psy8787 238 TVCLNMVQDPTQYD-VLVMPNLYGDILSDMCAG--LVGGLG---LTPSGNIGLNGALFES-VHGTAPDIA------GKDL 304 (364)
Q Consensus 238 ~~~~~lv~~P~~fd-Vivt~Nl~GDIlSD~aa~--l~G~lG---l~psa~ig~~~~~fEp-~HGsapdia------Gk~~ 304 (364)
++-..|-+=-.+-| +=||.|..=|+|+|+.-- |--|-= +.|=. .+++|||. +-||||+.+ |-=.
T Consensus 524 A~~~sleRir~G~dTISVTGNVLRDYLTDLFPIlELGTSAKMLSIVPLm---~GGGLfETGAGGSAPKHVqQ~~eEnhLR 600 (741)
T 1itw_A 524 ATRFSLARIREGKDTISVTGNVLRDYLTDLFPIMELGTSAKMLSIVPLM---SGGGLFETGAGGSAPKHVQQFLEEGYLR 600 (741)
T ss_dssp HHHHHHHHHHTTCCCEEEECHHHHHHHHHHHHHHHHSCSSSSEEEEEBT---TSCEEEESCSSCCCHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHcCCCeEEeechhhhhhccccchhhhhccchhHhhhcccc---cCCccccCCCCcCchHHHHHHHHcCccc
Confidence 66665544444556 779999999999999863 222222 22322 35699999 889999964 3347
Q ss_pred CChhHHHHHHHHHHHhcCcH-------HHHHHHHHHHHHHHHcCccccCCCC
Q psy8787 305 ANPTALLLSAVMMLRHLDLN-------THADVIQKAALDTIKEGKYRTGDLG 349 (364)
Q Consensus 305 aNP~a~ils~ammL~~lg~~-------~~a~~i~~Av~~~~~~g~~~T~Dlg 349 (364)
=+.+|-+|+.+-=|+||+.. --|+.+.+|..+.|.+++.-.+-.|
T Consensus 601 WDSLGEFlALa~Sle~l~~~~~N~kA~vLa~tLD~At~~~L~n~KSPsRkvG 652 (741)
T 1itw_A 601 WDSLGEFLALAASLEHLGNAYKNPKALVLASTLDQATGKILDNNKSPARKVG 652 (741)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTCSCCSSSS
T ss_pred hhhHHHHHHHHHhHHHHHhhcCChHHHHHHHHHHHHHHHHHhCCCCCCcccC
Confidence 78999999999999998742 3488999999999999875455554
No 32
>2hi1_A 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal phosphate biosynthesis, structural GENO PSI-2, protein structure initiative; 2.30A {Salmonella typhimurium}
Probab=95.88 E-value=0.0084 Score=57.90 Aligned_cols=135 Identities=24% Similarity=0.234 Sum_probs=83.6
Q ss_pred EecHHHHHHHHHHHHHHHHhCC--CCceEEEEeCcccccccHHH--------HHHHHHHhhcCCCeeE-eeEeHHHHHHH
Q psy8787 174 LITEEASSRVAEFAFEYAKTNN--RSKVTAVHKANIMRMSDGLF--------LRCCRDAAEKFPEVKF-EEKYLDTVCLN 242 (364)
Q Consensus 174 ~~t~~~~eriar~Af~~A~~~~--~~~Vt~v~KaNv~~~~~~lf--------~~~~~~va~~yp~i~~-~~~~vD~~~~~ 242 (364)
.+|++.+.+.++...++-++-| +.|+.+ -==|-=.--.|+| .-..++..++ ++.+ -..-.|++-.+
T Consensus 181 ~it~e~i~~~i~~~~~L~~~fgi~~PrIaV-~GLNPHAGE~G~~G~EE~~iI~PAi~~~r~~--Gi~~~GP~paDT~F~~ 257 (330)
T 2hi1_A 181 TLSTARVETVIGIADTFLKRVGYVKPRIAV-AGVNPHAGENGLFGDEETRILTPAITDARAK--GMDVYGPCPPDTVFLQ 257 (330)
T ss_dssp HCCHHHHHHHHHHHHHHHHHTTCSSCEEEE-ECSSGGGSSTTSCCHHHHHTHHHHHHHHHTT--TCEEEEEECHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHcCCCCCCEEE-EecCCCCCCCCCCCHhHHHHHHHHHHHHHHC--CCceeCCCCchhhccc
Confidence 4788999999998888333223 234433 2223211112333 2233444333 5665 45568887665
Q ss_pred HhcCCCCccEEEeCCCcchhhhhhhhhccCCCCcccccccCCCc--eeEeeccCCCCCccCCCCCChhHHHHHHHHHHH
Q psy8787 243 MVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNG--ALFESVHGTAPDIAGKDLANPTALLLSAVMMLR 319 (364)
Q Consensus 243 lv~~P~~fdVivt~Nl~GDIlSD~aa~l~G~lGl~psa~ig~~~--~~fEp~HGsapdiaGk~~aNP~a~ils~ammL~ 319 (364)
-.+ ++||++|+. | -|++---.--+|+--+.|+--+- ----|-||||-||||||+|||.+|+-|.-+..+
T Consensus 258 ~~~--~~~D~vlaM--Y----HDQGlip~K~l~F~~gVNvTlGLP~iRTSvDHGTAfDIAGkG~A~~~Sl~~Ai~~A~~ 328 (330)
T 2hi1_A 258 AYE--GQYDMVVAM--Y----HDQGHIPLKLLGFYDGVNITAGLPFIRTSADHGTAFDIAWTGKAKSESMAVSIKLAMQ 328 (330)
T ss_dssp HHT--TSCSEEEES--S----HHHHHHHHHHCC-CCSEEEEETSSSEEEEESCCCCTTTTTTTCCCCHHHHHHHHHHHH
T ss_pred ccc--ccCCEEEEc--c----cccccHhHhhcccCcceEEecCCCEEEecCCCCccccccCCCCCChHHHHHHHHHHHH
Confidence 543 799999974 4 26665555566666777774332 334679999999999999999999988766443
No 33
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A
Probab=95.80 E-value=0.00011 Score=72.66 Aligned_cols=79 Identities=25% Similarity=0.346 Sum_probs=52.9
Q ss_pred cceeEeeccchhhhcccccCCCCCCCCccccCCCCcCH----------HHHHHHHHHHHhhcCCC--cee-----EEEEe
Q psy8787 19 VETISYLTLSELISAQYINTPSISQWSWRGLKVQGLGE----------FNLYANVRPCRSLEGYP--TLY-----DDVDV 81 (364)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~i~GDGIGp----------~EV~a~~r~Vl~a~g~~--i~~-----~~vdi 81 (364)
|+.+.=.+...+..+|+++.++.++|+|..+|+ ++.| |++|+|+|||...++++ ..+ ..+|+
T Consensus 73 G~~lp~~tl~~~~~~daiL~Gavg~P~~~~~~~-~~~~~~~ll~LRk~ldLyANvRP~k~~pg~~~~splk~~~~~~vD~ 151 (390)
T 3u1h_A 73 GTPLPEETLDVCRGSDAILLGAVGGPKWDQNPS-ELRPEKGLLGIRKGLDLFANLRPVKVYDSLADASPLKKEVIEGVDL 151 (390)
T ss_dssp SSSSCHHHHHHHHTSSEEEEEECCCSTTTSSCC-SSSSSCCHHHHHHHTTEEEEEEEEECCGGGTTSSSBCHHHHSSCEE
T ss_pred CCcCCHHHHHHHHHCCEEEECCcCCCCcCCCCc-ccCccchHHHHHHHhCCeEEEEEeeccCCccccCCcccccccCCcE
Confidence 444433445555677899999999999876664 3332 67778888876666553 223 57999
Q ss_pred eeeeecCCCCccccchh
Q psy8787 82 VTIRENTEGEYSGIEHE 98 (364)
Q Consensus 82 g~~re~~~G~Y~~lp~e 98 (364)
.++||+++|.|++++..
T Consensus 152 vIVREnTeG~Y~g~~~~ 168 (390)
T 3u1h_A 152 VIVRELTGGLYFGEPSE 168 (390)
T ss_dssp EEEEECSSBSCC-----
T ss_pred EEEeeCCCCeecCcccc
Confidence 99999999999988654
No 34
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} SCOP: c.77.1.1 PDB: 3udo_A
Probab=95.39 E-value=8.9e-05 Score=72.62 Aligned_cols=107 Identities=29% Similarity=0.347 Sum_probs=62.1
Q ss_pred cceeEeeccchhhhcccccCCCCCCCCccccCCCCcCH-----------HHHHHHHHHHHhhcCC----Cce----eEEE
Q psy8787 19 VETISYLTLSELISAQYINTPSISQWSWRGLKVQGLGE-----------FNLYANVRPCRSLEGY----PTL----YDDV 79 (364)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~i~GDGIGp-----------~EV~a~~r~Vl~a~g~----~i~----~~~v 79 (364)
|+.+.-.+...+..+|+++.++.++|+|..+|+ +..| |++|+|+||+...+++ |+. ...+
T Consensus 56 G~~lp~~tl~~~~~~da~L~Gavg~P~~~~~~~-~~~~~~~~~l~LRk~ldLyaNvRP~~~~pg~~~~splk~~~~~~~v 134 (361)
T 3udu_A 56 GVALSDETLKLCEQSDAILFGSVGGPKWDNLPI-DQRPERASLLPLRKHFNLFANLRPCKIYESLTHASPLKNEIIQKGV 134 (361)
T ss_dssp SSSSCHHHHHHHHTSSEEEEEECCCGGGTTSCG-GGSHHHHHHHHHHHHHTCCEEEEEEECCGGGGGGSSBCHHHHTTCC
T ss_pred CCcCCHHHHHHHHHCCcEEECCcCCCCcCCCCC-CcCccccchHHHHHHcCCEEEEEEeeccCCccccCCCccccccCCC
Confidence 444433445555667899999899999876664 5655 3344444444333343 221 4679
Q ss_pred EeeeeeecCCCCccccchhHHHHhhhcCEEEEcccccchhhhcccce
Q psy8787 80 DVVTIRENTEGEYSGIEHEIVDGVCNSNYATKWFSERGASVEFNLYA 126 (364)
Q Consensus 80 dig~~re~~~G~Y~~lp~etl~~ik~~daiLkGav~~gLR~~ldlya 126 (364)
|+.++||+++|.|++.+....+.....++...-.+.+..|.+|++-.
T Consensus 135 D~vivREnTeG~Y~g~~~~~~~~a~~~~~~Tr~~~eRIar~AFe~A~ 181 (361)
T 3udu_A 135 DILCVRELTGGIYFGKQDLGKESAYDTEIYTKKEIERIARIAFESAR 181 (361)
T ss_dssp EEEEEEECSSGGGTSCEEECSSEEEEEEEEEHHHHHHHHHHHHHHHH
T ss_pred cEEEEcccCCCeecCccCCcCceEEEEEeccHHHHHHHHHHHHHHHH
Confidence 99999999999999886543110001111111111233788888753
No 35
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A*
Probab=94.97 E-value=0.00024 Score=69.86 Aligned_cols=79 Identities=25% Similarity=0.327 Sum_probs=52.8
Q ss_pred cceeEeeccchhhhcccccCCCCCCCCccccCCCCcCH-----------HHHHHHHHHHHhhcCC----Cce----eEEE
Q psy8787 19 VETISYLTLSELISAQYINTPSISQWSWRGLKVQGLGE-----------FNLYANVRPCRSLEGY----PTL----YDDV 79 (364)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~i~GDGIGp-----------~EV~a~~r~Vl~a~g~----~i~----~~~v 79 (364)
|+.+.=.+...+..+|+++.++.++|.|..+|+ ++.| |++|+|+||+...+++ |+. ...+
T Consensus 63 G~~lp~etl~~~~~~da~L~Gavg~P~~~~~~~-~~~~~~~~~l~LRk~ldLyaNvRP~~~~pg~~~~splk~~~~~~~v 141 (375)
T 3vmk_A 63 GCPLPEATLKGCEAADAVLFGSVGGPKWEHLPP-NDQPERGALLPLRGHFELFCNMRPAKLHPGLEHMSPLRSDISEKGF 141 (375)
T ss_dssp SSSSCHHHHHHHHTSSEEEEEECCCGGGTTSCS-TTSHHHHHHHHHHHHTTCCEEEEEEECCTTCGGGSSBCHHHHTTCC
T ss_pred CCcCCHHHHHHHHHCCeEEECCcCCCCccCCCc-cccccccchHHHHHHcCCeEEEEEEeccCCCcccCCCCcccccCCC
Confidence 443433445555667888888899999887764 4555 3444555555444454 221 3679
Q ss_pred EeeeeeecCCCCccccchh
Q psy8787 80 DVVTIRENTEGEYSGIEHE 98 (364)
Q Consensus 80 dig~~re~~~G~Y~~lp~e 98 (364)
|+.++||+++|.|++.+.+
T Consensus 142 D~vIvREnTeG~Y~g~~~~ 160 (375)
T 3vmk_A 142 DILCVRELTGGIYFGKPKG 160 (375)
T ss_dssp EEEEEEECSSBTTTCSSCE
T ss_pred CEEEEeeCCCCEecCCccc
Confidence 9999999999999987653
No 36
>4aty_A Terephthalate 1,2-CIS-dihydrodiol dehydrogenase; oxidoreductase; 1.85A {Burkholderia xenovorans LB400}
Probab=94.88 E-value=0.015 Score=56.70 Aligned_cols=132 Identities=21% Similarity=0.190 Sum_probs=73.5
Q ss_pred EecHHHHHHHHHHHHHHHHhCC--CCceEEEEeCcccccccHHH--------HHHHHHHhhcCCCeeE-eeEeHHHHHHH
Q psy8787 174 LITEEASSRVAEFAFEYAKTNN--RSKVTAVHKANIMRMSDGLF--------LRCCRDAAEKFPEVKF-EEKYLDTVCLN 242 (364)
Q Consensus 174 ~~t~~~~eriar~Af~~A~~~~--~~~Vt~v~KaNv~~~~~~lf--------~~~~~~va~~yp~i~~-~~~~vD~~~~~ 242 (364)
.+|++.+.+.++...+.-++-+ +.|+.+. ==|-=.--+|+| .-+.++..++ ++.+ -..-.|++-
T Consensus 196 ~It~~~I~~~i~~~~~~l~~fgi~~PrIaV~-GLNPHaGE~G~~G~EE~~iI~Pai~~l~~~--gi~v~GP~paDt~F-- 270 (349)
T 4aty_A 196 RLDQRHVERAARAAVQALQLMGIAHPVVGLM-GINPHAGEGGLFGRDDIDITEPVARKLRDD--GMTVIGPQGADLLL-- 270 (349)
T ss_dssp HCCHHHHHHHHHHHHHHHHHTC-CCCCEEEE-CSSGGGGTTTTTCSHHHHTHHHHHHHHHHC---CCEEEEECHHHHT--
T ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCCceEEE-ecCCCCCccccccchHHHHHHHHHHHHHHC--CCeEeCCCchhhhh--
Confidence 4677777777776555444433 2344332 122211112343 1234444443 3333 345578764
Q ss_pred HhcCCCCccEEEeCCCcchhhhhhhhhccCCCCcccccccCCC--ceeEeeccCCCCCccCCCCCChhHHHHHHHHHHH
Q psy8787 243 MVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLN--GALFESVHGTAPDIAGKDLANPTALLLSAVMMLR 319 (364)
Q Consensus 243 lv~~P~~fdVivt~Nl~GDIlSD~aa~l~G~lGl~psa~ig~~--~~~fEp~HGsapdiaGk~~aNP~a~ils~ammL~ 319 (364)
.+.+||++|+ ||= |++---.--++.--+.|+--+ .----|.||||-||||||+|||.+++-|.-|...
T Consensus 271 ---~~~~~D~vla--MYH----DQgl~p~K~l~f~~~vnitlGLp~iRtS~dHGta~diagkg~a~~~s~~~Ai~~a~~ 340 (349)
T 4aty_A 271 ---TNPDIDVFVA--MYH----DQGHIPVKLRAGRHSAALSIGAGVLFSSVGHGSGFDIAGTLLADPAPLLGAIRLVTT 340 (349)
T ss_dssp ---TCTTCSEEEE--SSH----HHHHHHHHHHHTTSEEEEEESSSSEEEECCSCCCTTSTTTTCCCCHHHHHHHHHHHH
T ss_pred ---ccCCCCEEEE--ccc----ccchHHHHhcccCCcEEEecCCCeeEeCCCCChhhhhccCCCCChHHHHHHHHHHHH
Confidence 2468999988 442 444322223344444555322 2233578999999999999999999987766544
No 37
>1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine biosynthesis,oxidoreductase, structural GE PSI; 2.01A {Pseudomonas aeruginosa}
Probab=94.76 E-value=0.014 Score=56.27 Aligned_cols=135 Identities=18% Similarity=0.169 Sum_probs=81.8
Q ss_pred EecHHHHHHHHHHHHHHHHh-CC--CCceEEEEeCcccccccHHH--------HHHHHHHhhcCCCeeE-eeEeHHHHHH
Q psy8787 174 LITEEASSRVAEFAFEYAKT-NN--RSKVTAVHKANIMRMSDGLF--------LRCCRDAAEKFPEVKF-EEKYLDTVCL 241 (364)
Q Consensus 174 ~~t~~~~eriar~Af~~A~~-~~--~~~Vt~v~KaNv~~~~~~lf--------~~~~~~va~~yp~i~~-~~~~vD~~~~ 241 (364)
.+|++.+.+.++...+--++ -| +.|+.+ -==|-=.--.|+| .-..++..++ ++.+ -..-.|++-.
T Consensus 174 ~it~e~i~~~i~~~~~~L~~~fgi~~PrIaV-~GLNPHAGE~G~~G~EE~~iI~Pai~~~r~~--Gi~~~GP~paDT~F~ 250 (328)
T 1yxo_A 174 AISDERLTRVARILHADLRDKFGIAHPRILV-CGLNPHAGEGGHLGREEIEVIEPCLERLRGE--GLDLIGPLPADTLFT 250 (328)
T ss_dssp HCCHHHHHHHHHHHHHHHHHTTCCSSCEEEE-ECSSGGGGTTTTTCSHHHHTHHHHHHHHHTT--TCEEEEEECHHHHTS
T ss_pred hcCHHHHHHHHHHHHHHHHHHcCCCCCCEEE-EecCCCCCCCCCCCHhHHHHHHHHHHHHHHC--CCceeCCCCchhhcc
Confidence 37888888888877764444 23 234433 2223211112333 2234444443 5655 4556888765
Q ss_pred HHhcCCCCccEEEeCCCcchhhhhhhhhccCCCCcccccccCCCc--eeEeeccCCCCCccCCCCCChhHHHHHHHHHHH
Q psy8787 242 NMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNG--ALFESVHGTAPDIAGKDLANPTALLLSAVMMLR 319 (364)
Q Consensus 242 ~lv~~P~~fdVivt~Nl~GDIlSD~aa~l~G~lGl~psa~ig~~~--~~fEp~HGsapdiaGk~~aNP~a~ils~ammL~ 319 (364)
+-.+ ++||++|+. | -|++---.--+|+--+.|+--+- ----|-||||-||||||+|||.+|+-|.-+..+
T Consensus 251 ~~~~--~~~D~vlaM--Y----HDQGlip~K~l~F~~gVNvTlGLP~iRTSvDHGTAfDIAGkG~A~~~Sl~~Ai~~A~~ 322 (328)
T 1yxo_A 251 PKHL--EHCDAVLAM--Y----HDQGLPVLKYKGFGAAVNVTLGLPIIRTSVDHGTALDLAGSGRIDSGSLQVALETAYQ 322 (328)
T ss_dssp HHHH--TTCSEEEES--S----HHHHHHHHHHHHTTSCEEEEESSSSCEEEECSCCCGGGTTTCCCCCHHHHHHHHHHHH
T ss_pred cccc--cCCCEEEEc--c----cccccHhHhhcccCcceEEecCCCEEEecCCCCccccccCCCCCChHHHHHHHHHHHH
Confidence 5443 699999974 4 25654444455555666663222 334689999999999999999999988765443
No 38
>3tsn_A 4-hydroxythreonine-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: UNL; 2.63A {Campylobacter jejuni subsp}
Probab=93.90 E-value=0.033 Score=54.40 Aligned_cols=78 Identities=26% Similarity=0.192 Sum_probs=50.6
Q ss_pred EeHHHHHHHHhcCCCCccEEEeCCCcchhhhhhhhhccCCCCcccccccCCCc--eeEeeccCCCCCccCCC-CCChhHH
Q psy8787 234 KYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNG--ALFESVHGTAPDIAGKD-LANPTAL 310 (364)
Q Consensus 234 ~~vD~~~~~lv~~P~~fdVivt~Nl~GDIlSD~aa~l~G~lGl~psa~ig~~~--~~fEp~HGsapdiaGk~-~aNP~a~ 310 (364)
.-.|++-.+-. -++||.+|+. | -|++---.--+|+--+.|+--+- ----|-||||-|||||| +|||.+|
T Consensus 282 ~paDT~F~~~~--~~~~D~vlAM--Y----HDQGliplK~l~F~~gVNvTlGLP~IRTSvDHGTAfDIAGkG~~Ad~~Sl 353 (367)
T 3tsn_A 282 LVADTAFTKTG--LKNCNRLVAM--Y----HDLALAPLKALYFDKSINVSLNLPIIRVSVDHGTAFDKAYKNAKINTKSY 353 (367)
T ss_dssp BCHHHHTSHHH--HHHCCEEEES--S----HHHHHHHHHHHCTTTCEEEEESSSSCEEECCCCSCTTSCSSCCCCCCHHH
T ss_pred cCchhhhccch--hcCCCEEEEc--c----ccCcchhhhhcccCccEEEecCCCeeeecCCCCcchhhcCCCCcCChHHH
Confidence 33566543322 2689999984 4 24544334445555566663222 23357899999999999 9999999
Q ss_pred HHHHHHHHH
Q psy8787 311 LLSAVMMLR 319 (364)
Q Consensus 311 ils~ammL~ 319 (364)
+-|.-+..+
T Consensus 354 ~~Ai~~A~~ 362 (367)
T 3tsn_A 354 FEAAKFAIN 362 (367)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988766543
No 39
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A
Probab=92.89 E-value=0.0026 Score=62.33 Aligned_cols=79 Identities=24% Similarity=0.356 Sum_probs=54.1
Q ss_pred ccceeEeeccchhhhcccccCCCCCCCCccccCCCCcCH-----------HHHHHHHHHHHhhcCCC--cee------EE
Q psy8787 18 TVETISYLTLSELISAQYINTPSISQWSWRGLKVQGLGE-----------FNLYANVRPCRSLEGYP--TLY------DD 78 (364)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~i~GDGIGp-----------~EV~a~~r~Vl~a~g~~--i~~------~~ 78 (364)
+++.+.-.+...+..+|+++.++.++|+|..+|. ++.| |++|+|+||+...+++. ..| ..
T Consensus 53 ~g~~lp~~tl~~~~~~da~L~Gavg~p~~~~~~~-~~~~e~~~~l~LR~~ldlyanvRP~~~~pgl~~~splk~~~~~~~ 131 (363)
T 1cnz_A 53 HGHPLPKATVEGCEQADAILFGSVGGPKWENLPP-ESQPERGALLPLRKHFKLFSNLRPAKLYQGLEAFCPLRADIAANG 131 (363)
T ss_dssp HSSSSCHHHHHHHHTSSEEEEEECCCGGGTTSCG-GGSTTHHHHHHHHHHHTCCEEEEEEECCTTCGGGCSBCHHHHHHC
T ss_pred cCCcCcHHHHHHHHHCCEEEEccccCCccccCCc-ccCcccchHHHHHHHcCCEEEEEEEEecCCccCCCCCcccccCCC
Confidence 3444444455566677888889899998876765 3323 45556666665555541 233 56
Q ss_pred EEeeeeeecCCCCccccch
Q psy8787 79 VDVVTIRENTEGEYSGIEH 97 (364)
Q Consensus 79 vdig~~re~~~G~Y~~lp~ 97 (364)
+|+.++||+++|.|++.|.
T Consensus 132 vDivivREnteg~Y~g~~~ 150 (363)
T 1cnz_A 132 FDILCVRELTGGIYFGQPK 150 (363)
T ss_dssp CEEEEEEECSSGGGTCSSC
T ss_pred CCEEEEecccCCeecCCcC
Confidence 8999999999999998864
No 40
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A
Probab=92.89 E-value=0.003 Score=61.81 Aligned_cols=79 Identities=29% Similarity=0.386 Sum_probs=56.3
Q ss_pred ccceeEeeccchhhhcccccCCCCCCCCccccCCCCcCH----------HHHHHHHHHHHhhcCC----Cce---eEEEE
Q psy8787 18 TVETISYLTLSELISAQYINTPSISQWSWRGLKVQGLGE----------FNLYANVRPCRSLEGY----PTL---YDDVD 80 (364)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~i~GDGIGp----------~EV~a~~r~Vl~a~g~----~i~---~~~vd 80 (364)
+|+.+.-.+...+..+|+++.++.++|.|..+|. ++.| |++|+|+||+...+++ |+. +..+|
T Consensus 52 ~g~~lp~~tl~~~~~~da~l~Gavg~P~~~~~~~-~~~~~~~~l~LR~~ldlyanvRP~~~~pgl~~~splk~~~~~~iD 130 (359)
T 2y3z_A 52 FGEPFPEPTRKGVEEAEAVLLGSVGGPKWDGLPR-KIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEIARGVD 130 (359)
T ss_dssp HSSSSCHHHHHHHHHSSEEEECCCCCGGGTTSCG-GGCHHHHHHHHHHHTTEEEEEEEEECCTTCGGGSSSCHHHHTTCE
T ss_pred hCCcCCHHHHHHHHHCCEEEEccccCCccccCCc-ccccchhHHHHHHHhCCEEEEEEeeccCCCCCCCCcccccCCCce
Confidence 4555555566667778999999999999877774 4434 5566666666655554 221 24689
Q ss_pred eeeeeecCCCCccccch
Q psy8787 81 VVTIRENTEGEYSGIEH 97 (364)
Q Consensus 81 ig~~re~~~G~Y~~lp~ 97 (364)
+.++||+++|.|++.+.
T Consensus 131 ~vivREnteg~Y~g~e~ 147 (359)
T 2y3z_A 131 VLIVRELTGGIYFGEPR 147 (359)
T ss_dssp EEEEEECSCSTTTCSSC
T ss_pred EEEEecCccceEecCCC
Confidence 99999999999998865
No 41
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1
Probab=92.62 E-value=0.0023 Score=62.73 Aligned_cols=79 Identities=29% Similarity=0.355 Sum_probs=53.4
Q ss_pred ccceeEeeccchhhhcccccCCCCCCCCccccCCCCcCH-----------HHHHHHHHHHHhhcCCC--cee------EE
Q psy8787 18 TVETISYLTLSELISAQYINTPSISQWSWRGLKVQGLGE-----------FNLYANVRPCRSLEGYP--TLY------DD 78 (364)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~i~GDGIGp-----------~EV~a~~r~Vl~a~g~~--i~~------~~ 78 (364)
+|+.+.-.+...+..+|+++.++.++|.+..+| +++.| |++|+|+||+...++++ ..+ ..
T Consensus 61 ~g~~lp~~tl~~~~~~da~L~Gavg~P~~~~~~-~~~r~~~~~~l~LRk~ldlyaN~RP~~~~pgl~~~splk~~~~~~~ 139 (366)
T 1vlc_A 61 FGEPLPEETKKICLEADAIFLGSVGGPKWDDLP-PEKRPEIGGLLALRKMLNLYANIRPIKVYRSLVHVSPLKEKVIGSG 139 (366)
T ss_dssp HSSSSCHHHHHHHHHSSEEEEEECCCGGGTTSC-STTSHHHHTHHHHHHHTTCCEEEEEEECCGGGGGGSSSCHHHHTTC
T ss_pred hCCcCCHHHHHHHHHCCEEEECCccCCccccCC-cccCcccchhHHHHHHhCCEEEEEEccccCCCCCcCCCcccccCCC
Confidence 344444445566667789998989999887666 44433 44555555555444543 233 46
Q ss_pred EEeeeeeecCCCCccccch
Q psy8787 79 VDVVTIRENTEGEYSGIEH 97 (364)
Q Consensus 79 vdig~~re~~~G~Y~~lp~ 97 (364)
+|+.++||+++|.|++.+.
T Consensus 140 vDivIvREnteG~Y~g~~~ 158 (366)
T 1vlc_A 140 VDLVTVRELSYGVYYGQPR 158 (366)
T ss_dssp CEEEEEEECSSGGGTEEEE
T ss_pred ceEEEEEeCCCCeecCCcc
Confidence 8999999999999988754
No 42
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X*
Probab=92.59 E-value=0.0019 Score=63.36 Aligned_cols=77 Identities=30% Similarity=0.437 Sum_probs=55.0
Q ss_pred ccceeEeeccchhhhcccccCCCCCCCCccccCCCCc---CH-------HHHHHHHHHHHhhcCCCcee-----EEEEee
Q psy8787 18 TVETISYLTLSELISAQYINTPSISQWSWRGLKVQGL---GE-------FNLYANVRPCRSLEGYPTLY-----DDVDVV 82 (364)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~i~GDGI---Gp-------~EV~a~~r~Vl~a~g~~i~~-----~~vdig 82 (364)
+|+.+.-.+...+..+|+++.++.++|+| +| ++. ++ |++|+|+||+...++++..+ ..+|+.
T Consensus 55 ~g~~lp~~tl~~~~~~da~L~Gavg~P~~--~~-~~~~~~s~~l~LR~~ldlyanvRP~~~~pg~~splk~~~~~~vD~v 131 (364)
T 3flk_A 55 HGKMMPDDWAEQLKQYDAIYFGAVGWPDK--VP-DHISLWGSLLKFRREFDQYVNIRPVRLFPGVPCALANRKVGDIDFV 131 (364)
T ss_dssp HSSSSCTTHHHHHTTSSEEEEEECCBTTT--BC-HHHHHHTTHHHHHHHTTCCEEEEEEECCTTCCCSBTTCCTTSSEEE
T ss_pred cCCcCCHHHHHHHHHCCEEEECCccCccc--CC-CCcCcccchHHHHHHhCCeEEEEEEeccCCcccccccccCCCCCEE
Confidence 45555555566666778888888999987 33 333 21 66777777776666665444 578999
Q ss_pred eeeecCCCCccccch
Q psy8787 83 TIRENTEGEYSGIEH 97 (364)
Q Consensus 83 ~~re~~~G~Y~~lp~ 97 (364)
++||+++|.|++.+.
T Consensus 132 ivREnteG~Y~g~~~ 146 (364)
T 3flk_A 132 VVRENTEGEYSSLGG 146 (364)
T ss_dssp EEEECSSBTCCCCEE
T ss_pred EEeeCCCceecCcCc
Confidence 999999999998754
No 43
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1
Probab=92.56 E-value=0.0033 Score=61.53 Aligned_cols=79 Identities=23% Similarity=0.375 Sum_probs=53.9
Q ss_pred ccceeEeeccchhhhcccccCCCCCCCCccccCCCCcCH----------HHHHHHHHHHHhhcCC----Cce---eEEEE
Q psy8787 18 TVETISYLTLSELISAQYINTPSISQWSWRGLKVQGLGE----------FNLYANVRPCRSLEGY----PTL---YDDVD 80 (364)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~i~GDGIGp----------~EV~a~~r~Vl~a~g~----~i~---~~~vd 80 (364)
+++.+.-.+...+..+++++.++.++|+|..+| +++.| |++|+|+||+...+++ |+. ...+|
T Consensus 50 ~g~~lp~~tl~~~~~~da~l~Gavg~p~~~~~~-~~~~~e~~ll~lRk~ldlyanvRP~~~~pgl~~~splk~~~~~~vD 128 (358)
T 1a05_A 50 SDDPLPAASLQLAMAADAVILGAVGGPRWDAYP-PAKRPEQGLLRLRKGLDLYANLRPAQIFPQLLDASPLRPELVRDVD 128 (358)
T ss_dssp HSSSSCHHHHHHHHHCSEEEEEECCCGGGTTSC-GGGSHHHHHHHHHHHHTCCEEEEEEECCTTSGGGCSBCHHHHTTCE
T ss_pred hCCcCCHHHHHHHHHCCEEEECCccCCCcccCC-ccccchhhHHHHHHHcCCEEEEEEEEecCCccCCCCCccccCCCce
Confidence 444444455566667789999999999987777 44444 4555555555554454 111 24589
Q ss_pred eeeeeecCCCCccccch
Q psy8787 81 VVTIRENTEGEYSGIEH 97 (364)
Q Consensus 81 ig~~re~~~G~Y~~lp~ 97 (364)
+.++||+++|.|++.|.
T Consensus 129 ivIvREnteg~Y~g~~~ 145 (358)
T 1a05_A 129 ILVVRELTGDIYFGQPR 145 (358)
T ss_dssp EEEEEECSSSTTTCSSC
T ss_pred EEEEEecCCCcccCCcC
Confidence 99999999999998864
No 44
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana}
Probab=92.09 E-value=0.0032 Score=62.48 Aligned_cols=78 Identities=23% Similarity=0.336 Sum_probs=52.4
Q ss_pred cceeEeeccchhhhcccccCCCCCCCCccccCCCCcCH----------HHHHHHHHHHHhhcCC----Cce---eEEEEe
Q psy8787 19 VETISYLTLSELISAQYINTPSISQWSWRGLKVQGLGE----------FNLYANVRPCRSLEGY----PTL---YDDVDV 81 (364)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~i~GDGIGp----------~EV~a~~r~Vl~a~g~----~i~---~~~vdi 81 (364)
|+.+.-.+...+-.+|+++.++.++|+|..+|+ ...| |++|+|+||+...+++ |+. .+.+|+
T Consensus 92 G~~lp~~tl~~~k~~daiL~Gavg~P~~~~~~~-~~~p~~~ll~LRk~ldLyaNlRP~k~~~gl~~~splk~~~~~~vD~ 170 (405)
T 3r8w_A 92 GVPLPEETISAAKESDAVLLGAIGGYKWDNNEK-HLRPEKGLLQIRAALKVFANLRPATVLPQLVDASTLKREVAEGVDL 170 (405)
T ss_dssp SSSSCHHHHHHHHHSSEEEEEECCCGGGTTSCG-GGSHHHHHHHHHHHHTCCEEEEEEECCGGGGGGSSBCHHHHTTCEE
T ss_pred CCcCCHHHHHHHHHCCEEEEccccCCCccCCcc-ccCcccchHHHHHHhCCeEEEEEeeccCCccccCccccccCCCceE
Confidence 443433444555667888888899998876554 3333 5566666666555443 221 357999
Q ss_pred eeeeecCCCCccccch
Q psy8787 82 VTIRENTEGEYSGIEH 97 (364)
Q Consensus 82 g~~re~~~G~Y~~lp~ 97 (364)
.++||+++|.|++.+.
T Consensus 171 vIvREnTeG~Y~G~e~ 186 (405)
T 3r8w_A 171 MVVRELTGGIYFGEPR 186 (405)
T ss_dssp EEEEECSCSTTTCSSC
T ss_pred EEEeeCCCCeecCCcc
Confidence 9999999999998764
No 45
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1
Probab=90.47 E-value=0.009 Score=57.91 Aligned_cols=75 Identities=32% Similarity=0.512 Sum_probs=53.9
Q ss_pred ccceeEeeccchhhhcccccCCCCCCCCccccCCCCcCH----HHHHHHHHHHHhhcCCCceeEEEEeeeeeecCCCCcc
Q psy8787 18 TVETISYLTLSELISAQYINTPSISQWSWRGLKVQGLGE----FNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYS 93 (364)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~i~GDGIGp----~EV~a~~r~Vl~a~g~~i~~~~vdig~~re~~~G~Y~ 93 (364)
+++.+.-.+...+..+++++.++.++|.+. .... |++|+|+||+...++++..+..+|+.++||+++|.|+
T Consensus 50 ~g~~lp~~t~~~~~~~da~l~Gav~tP~~~-----~~l~lR~~ldlyan~RP~~~~pg~~~~~~~~D~vivREnteg~Y~ 124 (336)
T 1wpw_A 50 YGEALPKDSLKIIDKADIILKGPVGESAAD-----VVVKLRQIYDMYANIRPAKSIPGIDTKYGNVDILIVRENTEDLYK 124 (336)
T ss_dssp SSSSSCHHHHHHHHTCSEEEECCCCTTHHH-----HHHHHHHTTTCCEEEEEEECCTTTCCSCSCCEEEEEEECSSBTTT
T ss_pred hCCcCCHHHHHHHHHCCEEEECCcCCCCcc-----hHHHHHHHhCCEEEEEEEeccCCCCCCCCCCcEEEEecCccCeEc
Confidence 444444445556667788888888887542 1111 6778888888777777766778999999999999999
Q ss_pred ccch
Q psy8787 94 GIEH 97 (364)
Q Consensus 94 ~lp~ 97 (364)
+.+.
T Consensus 125 g~~~ 128 (336)
T 1wpw_A 125 GFEH 128 (336)
T ss_dssp CCEE
T ss_pred CCcc
Confidence 8753
No 46
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A
Probab=88.91 E-value=0.0093 Score=57.85 Aligned_cols=77 Identities=30% Similarity=0.388 Sum_probs=51.7
Q ss_pred ccceeEeeccchhhhcccccCCCCCCCCccccCCCCc---CH-------HHHHHHHHHHHhhcCCCceeEE---EEeeee
Q psy8787 18 TVETISYLTLSELISAQYINTPSISQWSWRGLKVQGL---GE-------FNLYANVRPCRSLEGYPTLYDD---VDVVTI 84 (364)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~i~GDGI---Gp-------~EV~a~~r~Vl~a~g~~i~~~~---vdig~~ 84 (364)
+++.+.-.+...+..+|+++.++.++|++ |+ ++ ++ |++|+|+||+...++++..+.. +|+.++
T Consensus 46 ~g~~lp~~t~~~~~~~da~l~Gav~~P~~---~~-~~~~~s~~l~lR~~ldlyan~RP~~~~pg~~s~l~~~~~~Diviv 121 (337)
T 1w0d_A 46 TGEVLPDSVVAELRNHDAILLGAIGDPSV---PS-GVLERGLLLRLRFELDHHINLRPARLYPGVASPLSGNPGIDFVVV 121 (337)
T ss_dssp HSCSSCHHHHHHHTTSSEEEEEECCCTTS---CT-THHHHHTHHHHHHHTTCCEEEEEEECCTTCCCSBTTCCCCEEEEE
T ss_pred hCCcCCHHHHHHHHHCCEEEECCccCCCC---CC-cccccchHHHHHHHcCCEEEEEEeecCCCCCCcccCCCCCcEEEE
Confidence 34444445555666778888888888753 22 32 21 5667777777666666544532 899999
Q ss_pred eecCCCCccccchh
Q psy8787 85 RENTEGEYSGIEHE 98 (364)
Q Consensus 85 re~~~G~Y~~lp~e 98 (364)
||+++|.|++.+..
T Consensus 122 REnteg~Y~g~e~~ 135 (337)
T 1w0d_A 122 REGTEGPYTGNGGA 135 (337)
T ss_dssp EECSCSGGGCCEEE
T ss_pred ecCCCCeecCCcce
Confidence 99999999988643
No 47
>1vi1_A Fatty acid/phospholipid synthesis protein PLSX; structural genomics, unknown function; HET: MSE; 2.95A {Bacillus subtilis} SCOP: c.77.1.4
Probab=88.40 E-value=1.6 Score=42.04 Aligned_cols=146 Identities=16% Similarity=0.138 Sum_probs=82.7
Q ss_pred ecHHHHHHHHHHHHHHHHh-CC--CCceEEEEeCcccc---cccHHHHHHHHHHhhcCCCeeEe-eEeHHHHHHHHhcCC
Q psy8787 175 ITEEASSRVAEFAFEYAKT-NN--RSKVTAVHKANIMR---MSDGLFLRCCRDAAEKFPEVKFE-EKYLDTVCLNMVQDP 247 (364)
Q Consensus 175 ~t~~~~eriar~Af~~A~~-~~--~~~Vt~v~KaNv~~---~~~~lf~~~~~~va~~yp~i~~~-~~~vD~~~~~lv~~P 247 (364)
.|.+...++++.+-++|++ -| ..||-+. |+-. .....-++.++...++ |++.++ .+--|+...
T Consensus 148 ~~~e~L~~~a~~~~~~a~~~~Gi~~PrValL---N~Ge~~~~g~e~i~~A~~ll~~~-~~i~~~G~ve~d~~~~------ 217 (345)
T 1vi1_A 148 AKPEHLVQYAIMGSVYSQQVRGVTSPRVGLL---NVGTEDKKGNELTKQTFQILKET-ANINFIGNVEARDLLD------ 217 (345)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSCCSSCEEEEE---ESSSSTTCSCHHHHHHHHHHHSC-TTSEEEEEEEGGGGGG------
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCCCeEEEE---eCCCCCCCCCHHHHHHHHHHhcC-CCCeEEeccCCCcccc------
Confidence 3677888899999999988 44 3578776 4421 1233455555544444 777663 444554422
Q ss_pred CCccEEEeCCCc-chhhhhhh----------------hhccCCCCc---ccccccCCCceeEee-ccCCCC-------Cc
Q psy8787 248 TQYDVLVMPNLY-GDILSDMC----------------AGLVGGLGL---TPSGNIGLNGALFES-VHGTAP-------DI 299 (364)
Q Consensus 248 ~~fdVivt~Nl~-GDIlSD~a----------------a~l~G~lGl---~psa~ig~~~~~fEp-~HGsap-------di 299 (364)
+.+||+|| ++| |+|.-=.. +++.+.+|+ .|... .-..-+.+ .||+|+ ++
T Consensus 218 G~aDVvV~-d~~~GNI~lK~~eg~~~~~~~~~k~~f~~~~~~~lg~~l~~P~l~--~~~~~~d~~~~gga~llG~~~pvi 294 (345)
T 1vi1_A 218 DVADVVVT-DGFTGNVTLKTLEGSALSIFKMMRDVMTSTLTSKLAAAVLKPKLK--EMKMKMEYSNYGGASLFGLKAPVI 294 (345)
T ss_dssp TSCSEEEC-CHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-------CCHHHHH--HHHHHHCGGGSCCEEEETBSSCEE
T ss_pred CCCCEEEe-CchhhhHHHHHHHhhhhhhHHHHHHHhhcchhhhhhhhhccchHH--HHHhcCCccccccceeecCCccEE
Confidence 78999997 666 88875555 112222232 01110 00000111 377766 89
Q ss_pred cCCCCCChhHHHHHHHHHHHhcCcHHHHHHHHHHH
Q psy8787 300 AGKDLANPTALLLSAVMMLRHLDLNTHADVIQKAA 334 (364)
Q Consensus 300 aGk~~aNP~a~ils~ammL~~lg~~~~a~~i~~Av 334 (364)
++++.+|+-+++.|..+..+... ...-++|++.+
T Consensus 295 ~~~g~a~~~~i~~ai~~A~~~a~-~~~~~~i~~~~ 328 (345)
T 1vi1_A 295 KAHGSSDSNAVFRAIRQAREMVS-QNVAALIQEEV 328 (345)
T ss_dssp ECCTTCCHHHHHHHHHHHHHHHH-TTHHHHHHHHT
T ss_pred EeCCCCCHHHHHHHHHHHHHHHH-cCHHHHHHHHH
Confidence 99999999999888876554422 12344454444
No 48
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B
Probab=88.35 E-value=0.014 Score=56.87 Aligned_cols=76 Identities=42% Similarity=0.640 Sum_probs=53.0
Q ss_pred ccceeEeeccchhhhcccccCCCCCCCCccccCCCCcCH-------HHHHHHHHHHHhhcCCCceeEEEEeeeeeecCCC
Q psy8787 18 TVETISYLTLSELISAQYINTPSISQWSWRGLKVQGLGE-------FNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEG 90 (364)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~i~GDGIGp-------~EV~a~~r~Vl~a~g~~i~~~~vdig~~re~~~G 90 (364)
+++.+.-.+...+..+++++.++.++|.+.. -.++ |++|+|+||+...++++..+..+|+.++||+++|
T Consensus 65 ~g~~lp~~tl~~~~~~da~l~Gav~~P~~~~----~~s~~l~lR~~ldlyan~RP~~~~pg~~s~~~~vD~vivREnteg 140 (354)
T 3blx_B 65 GLTTIPDPAVQSITKNLVALKGPLATPIGKG----HRSLNLTLRKTFGLFANVRPAKSIEGFKTTYENVDLVLIRENTEG 140 (354)
T ss_dssp TEEECCHHHHHHHHHHSEEEECCCCCC--------CCCHHHHHHHHHTEEEEEEEEECCTTCCCSSCSCEEEEEEECSSE
T ss_pred hCCCCCHHHHHHHHHCCEEEECCccCCCCcc----ccCchHHHHHHcCCEEEEEEecccCCCCCCCCCccEEEEecCcCC
Confidence 4444444555566677888888888875321 1222 6778888888777777666677999999999999
Q ss_pred Cccccch
Q psy8787 91 EYSGIEH 97 (364)
Q Consensus 91 ~Y~~lp~ 97 (364)
.|++.+.
T Consensus 141 ~Y~g~e~ 147 (354)
T 3blx_B 141 EYSGIEH 147 (354)
T ss_dssp EEEEEEE
T ss_pred cccCCcc
Confidence 9988754
No 49
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A
Probab=87.90 E-value=0.016 Score=56.04 Aligned_cols=100 Identities=28% Similarity=0.353 Sum_probs=63.5
Q ss_pred ccceeEeeccchhhhcccccCCCCCCCCccccCCCC-cCH-------HHHHHHHHHHHhhcCCCceeEEEEeeeeeecCC
Q psy8787 18 TVETISYLTLSELISAQYINTPSISQWSWRGLKVQG-LGE-------FNLYANVRPCRSLEGYPTLYDDVDVVTIRENTE 89 (364)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~i~GDG-IGp-------~EV~a~~r~Vl~a~g~~i~~~~vdig~~re~~~ 89 (364)
+++.+.-.+...+..+++++.++.++|.+. +.+ .++ |++|+|+||+...+ ++..+..+|+.++||+++
T Consensus 46 ~g~~lp~~tl~~~~~~da~l~Gav~~P~~~---~~~~~s~~l~lR~~ldlyan~RP~~~~p-~~s~~~~vD~vivREnte 121 (333)
T 1x0l_A 46 RGTSVPEETVEKILSCHATLFGAATSPTRK---VPGFFGAIRYLRRRLDLYANVRPAKSRP-VPGSRPGVDLVIVRENTE 121 (333)
T ss_dssp HSSSSCHHHHHHHHTSSEEEEEECCCCSSC---CTTCCCHHHHHHHHTTCCEEEEEEECCS-STTCCSSCEEEEEEECGG
T ss_pred hCCcCcHHHHHHHHHCCEEEECCccCCCCC---CcCccChhHHHHHHcCCEEEEEEEeecc-CCCCCCCCCEEEEecCcc
Confidence 444444445556667788888888887643 221 222 67777777776665 555555799999999999
Q ss_pred CCccccchhHHHHhhhcCEEEEccc------ccchhhhccccee
Q psy8787 90 GEYSGIEHEIVDGVCNSNYATKWFS------ERGASVEFNLYAN 127 (364)
Q Consensus 90 G~Y~~lp~etl~~ik~~daiLkGav------~~gLR~~ldlyan 127 (364)
|.|++.+.. ..+++.-..+ .+..|.+|++-..
T Consensus 122 g~Y~g~~~~------~~~~a~~~~~~T~~~~eRiar~AF~~A~~ 159 (333)
T 1x0l_A 122 GLYVEQERR------YLDVAIADAVISKKASERIGRAALRIAEG 159 (333)
T ss_dssp GTCCCCEEE------ETTEEEEEEEEEHHHHHHHHHHHHHHHHT
T ss_pred ceecccccc------CCCeEEEEEEecHHHHHHHHHHHHHHHHh
Confidence 999988643 1233322221 1238888887643
No 50
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A*
Probab=86.82 E-value=0.007 Score=58.96 Aligned_cols=111 Identities=27% Similarity=0.301 Sum_probs=68.4
Q ss_pred cccccccccccceeEeeccchhhhcccccCCCCCCCCccccCCCCcCH-------HHHHHHHHHHHhhcCCCceeEEEEe
Q psy8787 9 LLKLPLQCNTVETISYLTLSELISAQYINTPSISQWSWRGLKVQGLGE-------FNLYANVRPCRSLEGYPTLYDDVDV 81 (364)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~i~GDGIGp-------~EV~a~~r~Vl~a~g~~i~~~~vdi 81 (364)
....++...+++.+.-.+...+..+++++.++.++|.. +....++ |++|+|+||+...++++..+..+|+
T Consensus 49 ~~~~~~G~~~g~~lp~~tl~~~~~~da~l~Gav~~P~~---~~~~~s~~l~lR~~ldlyan~RP~~~~pg~~~~~~~vD~ 125 (349)
T 3blx_A 49 WETINIKQTDHKEGVYEAVESLKRNKIGLKGLWHTPAD---QTGHGSLNVALRKQLDIYANVALFKSLKGVKTRIPDIDL 125 (349)
T ss_dssp EEECCCSSTTCHHHHHHHHHHHHHHSEEEEEECCSHHH---HHTCHHHHHHHHHTSCEEEEEEEEECCTTCCCSSCSCEE
T ss_pred EEEEecCcccCCcCcHHHHHHHHHCCEEEECCccCCCC---CCCccCchHHHHHHcCCEEEEEEEeccCCCCCCCCCcCE
Confidence 33444444566655555666666778888887877621 1111222 6677777777766777666667999
Q ss_pred eeeeecCCCCccccchhHHHHhhhcCEEEEccc------ccchhhhccccee
Q psy8787 82 VTIRENTEGEYSGIEHEIVDGVCNSNYATKWFS------ERGASVEFNLYAN 127 (364)
Q Consensus 82 g~~re~~~G~Y~~lp~etl~~ik~~daiLkGav------~~gLR~~ldlyan 127 (364)
.++||+++|.|++.+....+ +++.-..+ .+..|.+|++-..
T Consensus 126 vivREnteg~Y~g~e~~~~~-----gva~~~~~~T~~~~eRiar~AF~~A~~ 172 (349)
T 3blx_A 126 IVIRENTEGEFSGLEHESVP-----GVVESLKVMTRPKTERIARFAFDFAKK 172 (349)
T ss_dssp EEEEECSSGGGGCEEEECST-----TEEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCcEeCCceeccC-----CeEEEEEEeCHHHHHHHHHHHHHHHHh
Confidence 99999999999987543211 22221111 2338888887653
No 51
>1u7n_A Fatty acid/phospholipid synthesis protein PLSX; structural genomics, enterococcus faecalis V583, PSI, protein structure initiative; HET: MSE; 2.26A {Enterococcus faecalis} SCOP: c.77.1.4
Probab=86.29 E-value=2.9 Score=40.07 Aligned_cols=132 Identities=16% Similarity=0.123 Sum_probs=74.6
Q ss_pred cHHHHHHHHHHHHHHHHh-CC--CCceEEEEeCcccc---cccHHHHHHHHHHhhcCCCeeEe-eEeHHHHHHHHhcCCC
Q psy8787 176 TEEASSRVAEFAFEYAKT-NN--RSKVTAVHKANIMR---MSDGLFLRCCRDAAEKFPEVKFE-EKYLDTVCLNMVQDPT 248 (364)
Q Consensus 176 t~~~~eriar~Af~~A~~-~~--~~~Vt~v~KaNv~~---~~~~lf~~~~~~va~~yp~i~~~-~~~vD~~~~~lv~~P~ 248 (364)
|.+...++++.+-++|++ -| ..||-+. |+-. .....-++..+...++ |++.++ .+--|+... +
T Consensus 151 ~~e~L~~~a~~~~~~a~~~~Gi~~PrValL---N~Ge~~~~g~e~v~~A~~ll~~~-~~i~~~G~ve~d~~~~------g 220 (336)
T 1u7n_A 151 KPEHLVQYAVLGSFYAEKVRNVQNPRVGLL---NNGTEETKGSELTKKAFELLAAD-ETINFVGNVEARELLN------G 220 (336)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCSSCCEEEE---CSCC----CCHHHHHHHHHHHHC-TTSCEEEEECGGGGGG------C
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCCCeEEEE---eCcCCCCCCCHHHHHHHHHHhcC-CCCeEEeccCCCcccc------C
Confidence 556677777777799988 44 3578876 5432 1223345555444444 777664 344554322 7
Q ss_pred CccEEEeCCCc-chhhhhhhh------------hccC-----CCCcc---cccccCCCceeEee-ccCCCC-------Cc
Q psy8787 249 QYDVLVMPNLY-GDILSDMCA------------GLVG-----GLGLT---PSGNIGLNGALFES-VHGTAP-------DI 299 (364)
Q Consensus 249 ~fdVivt~Nl~-GDIlSD~aa------------~l~G-----~lGl~---psa~ig~~~~~fEp-~HGsap-------di 299 (364)
.+||+|| ++| |+|.-=..- .+.+ .+|+. |+.. .-..-+.+ .||+|+ ++
T Consensus 221 ~~DvvV~-d~~~GNi~lK~~eg~~~~~~~~~k~~f~~~~~~~~lg~~li~~~l~--~l~~~~d~~~~gga~llG~~~pvi 297 (336)
T 1u7n_A 221 VADVVVT-DGFTGNAVLKSIEGTAMNMMSLLKTAILSEGVKGKMGALLLKNALH--GMKDEMDYSKHGGAVLFGLKAPVI 297 (336)
T ss_dssp SCSEEEC-CHHHHHHHHHHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHH--HHHHHTCGGGGCCEEEETBSSCEE
T ss_pred CCCEEEe-CcchhhHHHHHHHhhHHHHHHHHHHHhccCCchhhhhhhhhhhhHH--HHHhccCccccccceeecCcCcEE
Confidence 8999997 666 888765551 2221 11210 1000 00000001 577776 79
Q ss_pred cCCCCCChhHHHHHHHHHHHh
Q psy8787 300 AGKDLANPTALLLSAVMMLRH 320 (364)
Q Consensus 300 aGk~~aNP~a~ils~ammL~~ 320 (364)
++++.+|+-+++.|..+..+.
T Consensus 298 ~~~g~a~~~~i~~ai~~A~~~ 318 (336)
T 1u7n_A 298 KTHGATGPDAVRYTIRQIHTM 318 (336)
T ss_dssp ECCTTCCHHHHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHHHHH
Confidence 999999999998888765444
No 52
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural genomics center for infectious ssgcid, glyoxylate bypass, manganese; 1.65A {Burkholderia pseudomallei} SCOP: c.77.1.1 PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4aj3_A* 4aja_A* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A ...
Probab=86.04 E-value=0.02 Score=57.21 Aligned_cols=66 Identities=29% Similarity=0.446 Sum_probs=42.4
Q ss_pred ccchhhhcccccCCCCCCCCccccCCCCcCH--------HHHHHHHHHHHhhcCCCcee---EEEEeeeeeecCCCCccc
Q psy8787 26 TLSELISAQYINTPSISQWSWRGLKVQGLGE--------FNLYANVRPCRSLEGYPTLY---DDVDVVTIRENTEGEYSG 94 (364)
Q Consensus 26 ~~~~~~~~~~~~~p~~~~~~i~~i~GDGIGp--------~EV~a~~r~Vl~a~g~~i~~---~~vdig~~re~~~G~Y~~ 94 (364)
+...+..+|++..++..+|.. .|..+ |++|+|+|||...++++..+ +.+|+.++||+++|.|++
T Consensus 98 tl~~~k~~da~l~G~~~tP~~-----~~~~s~~l~LRk~LdLyaNlRPv~~~pg~~splk~~~~vDivIvREnTeG~Y~G 172 (427)
T 3dms_A 98 TLQVLKEYVVSIKGPLTTPVG-----GGIRSLNVALRQELDLYVCLRPIQYFKGVPSPVREPEKTNMVIFRENSEDIYAG 172 (427)
T ss_dssp HHHHHHHTCEEEECCCCCCC---------CCHHHHHHHHTTCCEEEEEECCCTTCCCSSSCGGGCCEEEEEECSSGGGGC
T ss_pred HHHHHHhcCEEEECCCCCCCC-----cccCChhHHHHHHhCCeEEEEEeecCCCCCCCCCCCCCceEEEEEECCCCEecC
Confidence 334445567776666666532 22222 66777777776666654433 479999999999999998
Q ss_pred cc
Q psy8787 95 IE 96 (364)
Q Consensus 95 lp 96 (364)
++
T Consensus 173 ~e 174 (427)
T 3dms_A 173 IE 174 (427)
T ss_dssp CE
T ss_pred cc
Confidence 75
No 53
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} SCOP: c.77.1.0 PDB: 3ty3_A
Probab=85.62 E-value=0.029 Score=54.97 Aligned_cols=76 Identities=30% Similarity=0.324 Sum_probs=49.2
Q ss_pred ccceeEeeccchhhh-cccccCCCCCCCCccccCCCCcCH-------HHHHHHHHHHHhhcCCCceeEEEEeeeeeecCC
Q psy8787 18 TVETISYLTLSELIS-AQYINTPSISQWSWRGLKVQGLGE-------FNLYANVRPCRSLEGYPTLYDDVDVVTIRENTE 89 (364)
Q Consensus 18 ~~~~~~~~~~~~~~~-~~~~~~p~~~~~~i~~i~GDGIGp-------~EV~a~~r~Vl~a~g~~i~~~~vdig~~re~~~ 89 (364)
+|+.+.-.+...+.. +|+++.++.++|.+..+. -.++ |++|+|+||+...+++. ...+|+.++||+++
T Consensus 59 ~G~~lp~~tl~~~~~~~da~L~Gavg~P~~~~~~--~~s~~l~LRk~ldlyaNvRP~~~~~g~~--~~~vD~vivREnTe 134 (366)
T 3ty4_A 59 TGKALPERTVERLKTECNAALFGAVQSPTHKVAG--YSSPIVALRKKMGLYANVRPVKSLDGAK--GKPVDLVIVRENTE 134 (366)
T ss_dssp HSCSSCHHHHHHHHHHCSEEEEEECCCCSSCCTT--CCCHHHHHHHHTTCCEEEEEEECCTTCS--SSCCEEEEEEECSC
T ss_pred hCCCCCHHHHHHHHHhCCEEEECCccCCCCCCcc--cccchHHHHHHhCCeEEEEEEeccCCCC--CCCCcEEEEeeCCC
Confidence 444444445555566 588888888888654221 1222 56666666666555542 23589999999999
Q ss_pred CCccccch
Q psy8787 90 GEYSGIEH 97 (364)
Q Consensus 90 G~Y~~lp~ 97 (364)
|.|++.+.
T Consensus 135 G~Y~g~e~ 142 (366)
T 3ty4_A 135 CLYVKEER 142 (366)
T ss_dssp BGGGCCEE
T ss_pred CEeecCcc
Confidence 99998864
No 54
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus}
Probab=85.28 E-value=0.043 Score=54.56 Aligned_cols=74 Identities=32% Similarity=0.417 Sum_probs=49.7
Q ss_pred ccceeEeeccchhhhcccccCCCCCCCCccccCCCCcCH--------HHHHHHHHHHHhhcCCCce---eEEEEeeeeee
Q psy8787 18 TVETISYLTLSELISAQYINTPSISQWSWRGLKVQGLGE--------FNLYANVRPCRSLEGYPTL---YDDVDVVTIRE 86 (364)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~i~GDGIGp--------~EV~a~~r~Vl~a~g~~i~---~~~vdig~~re 86 (364)
+|+.+.-.+...+..+++++.++.++|. +++... |++|+|+|||...++++.. ++.+|+.++||
T Consensus 76 ~G~~lp~etl~~~k~~da~LkGav~tP~-----~~~~~s~~l~LR~~Ldlyan~RPv~~~~g~~splk~~~~vDivIvRE 150 (412)
T 2iv0_A 76 YGNYLPDDTLNAIKEFRVALKGPLTTPV-----GGGYRSLNVTIRQVLDLYANVRPVYYLKGVPSPIKHPEKVNFVIFRE 150 (412)
T ss_dssp HSCSSCHHHHHHHHHHCEEEECCCCCCS-----SSSSSHHHHHHHHHTTCCEEEEEEECCTTSCCSBSCGGGCEEEEEEE
T ss_pred hCCcCCHHHHHHHHHCCEEEECCccCCC-----CccccChhHHHHHHcCCeEEEEEEEecCCCCCCCCCcCCCCEEEEec
Confidence 3444444455566667888878777762 233322 6677777777666666433 34689999999
Q ss_pred cCCCCccccc
Q psy8787 87 NTEGEYSGIE 96 (364)
Q Consensus 87 ~~~G~Y~~lp 96 (364)
+++|.|++.+
T Consensus 151 nTeg~Y~G~e 160 (412)
T 2iv0_A 151 NTEDVYAGIE 160 (412)
T ss_dssp CSSSGGGCCE
T ss_pred CCCCEeCCcc
Confidence 9999998875
No 55
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1
Probab=84.54 E-value=0.047 Score=54.49 Aligned_cols=74 Identities=28% Similarity=0.326 Sum_probs=49.6
Q ss_pred cceeEeeccchhhhcccccCCCCCCCCccccCCCCcCH-------HHHHHHHHHHHhhcCCCcee---EEEEeeeeeecC
Q psy8787 19 VETISYLTLSELISAQYINTPSISQWSWRGLKVQGLGE-------FNLYANVRPCRSLEGYPTLY---DDVDVVTIRENT 88 (364)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~i~GDGIGp-------~EV~a~~r~Vl~a~g~~i~~---~~vdig~~re~~ 88 (364)
|+.+.-.+...+..++++..++.+.|. ++.-.++ |++|+|+||+...++++..+ +.+|+.++||++
T Consensus 72 g~~lp~etl~~~k~~da~lkGav~tP~----~~~~~s~nl~LRk~LdlyanvRPv~~~pg~~splk~~~~vDivIvREnt 147 (423)
T 1hqs_A 72 GEWLPAETLDVIREYFIAIKGPLTTPV----GGGIRSLNVALRQELDLFVCLRPVRYFTGVPSPVKRPEDTDMVIFRENT 147 (423)
T ss_dssp SCSSCHHHHHHHHHHCEEEECCCCCCS----SSSSCCHHHHHHHHTTCCEEEEEEECCTTCCCSBSCGGGCEEEEEEECS
T ss_pred CCcCcHHHHHHHHHCCEEEECCccCCC----CcCcCChhHHHHHHcCCEEEEEEEeccCCCCCCCCCCCCCcEEEEecCC
Confidence 444444455555667777777777762 1211233 67788888887767765444 358999999999
Q ss_pred CCCccccc
Q psy8787 89 EGEYSGIE 96 (364)
Q Consensus 89 ~G~Y~~lp 96 (364)
+|.|++++
T Consensus 148 eg~Y~G~e 155 (423)
T 1hqs_A 148 EDIYAGIE 155 (423)
T ss_dssp CGGGGCCE
T ss_pred CCeecccc
Confidence 99998875
No 56
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans}
Probab=84.36 E-value=0.041 Score=54.93 Aligned_cols=70 Identities=30% Similarity=0.441 Sum_probs=47.6
Q ss_pred eEeeccchhhhcccccCCCCCCCCccccCCCC-cCH-------HHHHHHHHHHHhhcCCCce---eEEEEeeeeeecCCC
Q psy8787 22 ISYLTLSELISAQYINTPSISQWSWRGLKVQG-LGE-------FNLYANVRPCRSLEGYPTL---YDDVDVVTIRENTEG 90 (364)
Q Consensus 22 ~~~~~~~~~~~~~~~~~p~~~~~~i~~i~GDG-IGp-------~EV~a~~r~Vl~a~g~~i~---~~~vdig~~re~~~G 90 (364)
+.-.+...+..+++++.++.+.|. +.| .++ |++|+|+|||...++++.. ++.+|+.++||+++|
T Consensus 84 lp~etl~~~k~~da~lkGav~tP~-----~~~~~s~~l~LRk~LdLyanvRPv~~~~gv~splk~~~~vDivIvREnTeg 158 (429)
T 2d4v_A 84 LPDETMAAIREYKVAIKGPLETPV-----GGGIRSLNVAMRQDLDLYVCLRPVRYFEGTPSPMRHPEKVDMVIFRENSED 158 (429)
T ss_dssp SCHHHHHHHHHHCEEEECCCCCCS-----SSSSCCHHHHHHHHTTCCEEEEEEECCTTCCCSBSCGGGCEEEEEEECSCG
T ss_pred CcHHHHHHHHHCCEEEECCccCCC-----cccccChhHHHHHHcCCEEEEEEEEecCCCCCCCCCcCCCCEEEEEeCCCC
Confidence 333344555566787777777761 222 233 6778888888766676533 346899999999999
Q ss_pred Cccccc
Q psy8787 91 EYSGIE 96 (364)
Q Consensus 91 ~Y~~lp 96 (364)
.|++++
T Consensus 159 ~Y~G~e 164 (429)
T 2d4v_A 159 IYAGIE 164 (429)
T ss_dssp GGGCCE
T ss_pred eecCcc
Confidence 998875
No 57
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A*
Probab=84.16 E-value=0.049 Score=54.52 Aligned_cols=73 Identities=37% Similarity=0.487 Sum_probs=50.5
Q ss_pred ccceeEeeccchhhhcccccCCCCCCCCccccCCCCcCH--------HHHHHHHHHHHhhcCCCcee---EEEEeeeeee
Q psy8787 18 TVETISYLTLSELISAQYINTPSISQWSWRGLKVQGLGE--------FNLYANVRPCRSLEGYPTLY---DDVDVVTIRE 86 (364)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~i~GDGIGp--------~EV~a~~r~Vl~a~g~~i~~---~~vdig~~re 86 (364)
+++.+.-.+...+..+++++.++.++|. +++... |++|+|+|||... +++..+ ..+|+.++||
T Consensus 87 ~G~~lp~etl~~~k~~da~LkGav~tP~-----~~~~~s~~l~LRk~LdlyanlRPv~~~-gv~splk~~~~vDivIvRE 160 (435)
T 1tyo_A 87 CGELLPKATLEGIRLARVALKGPLETPV-----GTGYRSLNVAIRQALDLYANIRPVRYY-GQPAPHKYADRVDMVIFRE 160 (435)
T ss_dssp HSSSSCHHHHHHHHHHSEEEECCCCCCT-----TSCTTHHHHHHHHHHTCCEEEEEEECC-SCCCSBTTGGGCEEEEEEE
T ss_pred hCCcCCHHHHHHHHhCCeEEECCccCCC-----cccccChhHHHHHHcCCEEEeEEEEec-CCCCCCCCcCCCcEEEEec
Confidence 4444444555666677888877777762 233332 6788888888766 765433 2689999999
Q ss_pred cCCCCccccc
Q psy8787 87 NTEGEYSGIE 96 (364)
Q Consensus 87 ~~~G~Y~~lp 96 (364)
+++|.|++++
T Consensus 161 nTeg~Y~G~e 170 (435)
T 1tyo_A 161 NTEDVYAGIE 170 (435)
T ss_dssp CSSSGGGCCE
T ss_pred CCCCeecccc
Confidence 9999998875
No 58
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus}
Probab=83.36 E-value=0.056 Score=54.76 Aligned_cols=73 Identities=33% Similarity=0.531 Sum_probs=51.2
Q ss_pred ceeEeeccchhhhcccccCCCCCCCCccccCCCC-cCH-------HHHHHHHHHHHhhcCCCcee--EEEEeeeeeecCC
Q psy8787 20 ETISYLTLSELISAQYINTPSISQWSWRGLKVQG-LGE-------FNLYANVRPCRSLEGYPTLY--DDVDVVTIRENTE 89 (364)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~p~~~~~~i~~i~GDG-IGp-------~EV~a~~r~Vl~a~g~~i~~--~~vdig~~re~~~ 89 (364)
+.+.-.+...+..+++++.++.++|.. ++ .++ |++|+|+||+...++++..+ ..+|+.++||+++
T Consensus 67 ~~lp~etle~ik~~daiLkGavgtP~~-----~~~~s~~l~LRk~LdLyaNlRP~k~~pgl~splk~~~vD~vIVREnTE 141 (496)
T 2d1c_A 67 SGVPQETIESIRKTRVVLKGPLETPVG-----YGEKSANVTLRKLFETYANVRPVREFPNVPTPYAGRGIDLVVVRENVE 141 (496)
T ss_dssp TSCCHHHHHHHHHHCEEEECCCCCCSS-----SSSCCHHHHHHHHTTCCEEEEEEECBTTBCCTTTTSCCEEEEEEECSS
T ss_pred CcCcHHHHHHHHHCCEEEECCccCCCc-----ccccChHHHHHHHhCCEEEEEEEeecCCCCccccCCCccEEEEeeCcC
Confidence 444444555666778888888888742 22 233 66777777776666665444 6799999999999
Q ss_pred CCccccch
Q psy8787 90 GEYSGIEH 97 (364)
Q Consensus 90 G~Y~~lp~ 97 (364)
|.|++.+.
T Consensus 142 G~Y~G~e~ 149 (496)
T 2d1c_A 142 DLYAGIEH 149 (496)
T ss_dssp BGGGCCEE
T ss_pred ceEeceeE
Confidence 99988753
No 59
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A*
Probab=81.44 E-value=0.055 Score=53.73 Aligned_cols=74 Identities=28% Similarity=0.445 Sum_probs=46.8
Q ss_pred ccceeEeeccchhhhcccccCCCCCCCCccccCCCCc-CH-------HHHHHHHHHHHhhcCCCce---eEEEEeeeeee
Q psy8787 18 TVETISYLTLSELISAQYINTPSISQWSWRGLKVQGL-GE-------FNLYANVRPCRSLEGYPTL---YDDVDVVTIRE 86 (364)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~i~GDGI-Gp-------~EV~a~~r~Vl~a~g~~i~---~~~vdig~~re 86 (364)
+|+.+.-.+...+..+++++.++.++|. +++. ++ |++|+|+||+...++++.. ++.+|+.++||
T Consensus 76 ~g~~lp~etl~~~k~~da~LkGav~tP~-----~~~~~s~~l~LR~~LdlyanvRPv~~~~g~~splk~~~~vDivIvRE 150 (409)
T 2e0c_A 76 VNDRFPKETQEMLLKYRVVLKGPLETPI-----GKGWKSVNVAIRLMLDLYANIRPVKYIEGLESPLKHPEKVDMIIFRE 150 (409)
T ss_dssp HSCSSCHHHHHHHHHHCEEEECCCC-------------CHHHHHHHHTTCCEEEEEEECCTTCCCSBSCCTTCEEEEEEE
T ss_pred hCCcCCHHHHHHHHHCCEEEECCccCCC-----cccccChhHHHHHHcCCEEEEEEEeccCCCCCCCCCccCCcEEEEEc
Confidence 3444444455555667888877777762 2222 32 6777777777766666433 34689999999
Q ss_pred cCCCCccccc
Q psy8787 87 NTEGEYSGIE 96 (364)
Q Consensus 87 ~~~G~Y~~lp 96 (364)
+++|.|++++
T Consensus 151 nteg~Y~g~e 160 (409)
T 2e0c_A 151 NTDDLYRGIE 160 (409)
T ss_dssp CSSGGGGCCE
T ss_pred CCCCEeCCcc
Confidence 9999998875
No 60
>2af4_C Phosphate acetyltransferase; PTA dimer with one COA ligand bound PER monomer, acyltransferase; HET: COA; 2.15A {Methanosarcina thermophila} SCOP: c.77.1.5 PDB: 1qzt_A* 2af3_C*
Probab=80.05 E-value=6.3 Score=37.57 Aligned_cols=97 Identities=18% Similarity=0.230 Sum_probs=64.9
Q ss_pred ecHHHHHHHHHHHHHHHHh-CC-CCceEEEEeCcccc---cccHHHHHHHHHHhhcCCCeeEe-eEeHHHHHHHHhc---
Q psy8787 175 ITEEASSRVAEFAFEYAKT-NN-RSKVTAVHKANIMR---MSDGLFLRCCRDAAEKFPEVKFE-EKYLDTVCLNMVQ--- 245 (364)
Q Consensus 175 ~t~~~~eriar~Af~~A~~-~~-~~~Vt~v~KaNv~~---~~~~lf~~~~~~va~~yp~i~~~-~~~vD~~~~~lv~--- 245 (364)
.|.+...++++.+-++|++ -| ..||.+..=.+--. .....-++.++.+.+++|++.++ .+-.|++...=+.
T Consensus 178 pt~e~l~~ia~~~~~~~~~~~Gi~PrVAlLs~ge~g~~~~~~~~~v~~A~~ll~~~~~~~~v~Gpl~~D~a~~~~~~~~k 257 (333)
T 2af4_C 178 PSVEDVANIAVISAKTFELLVQDVPKVAMLSYSTKGSAKSKLTEATIASTKLAQELAPDIAIDGELQVDAAIVPKVAASK 257 (333)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCSCCEEEEECSCSTTSCCSHHHHHHHHHHHHHHHHCTTSEEEEEECHHHHHCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCCeEEEEeCccCCCCCCCCcHHHHHHHHHHhccCCCcEEEecCcHHHhcCHHHHHhc
Confidence 3677888889999999987 33 35677765221111 11134555555555578988775 5568877655444
Q ss_pred ---CC--CCccEEEeCCCc-chhhhhhhhhcc
Q psy8787 246 ---DP--TQYDVLVMPNLY-GDILSDMCAGLV 271 (364)
Q Consensus 246 ---~P--~~fdVivt~Nl~-GDIlSD~aa~l~ 271 (364)
++ +.+||+|++|+| |+|.-=+..-+.
T Consensus 258 ~~~s~~~G~aDvlV~pd~d~GNI~~K~l~~~~ 289 (333)
T 2af4_C 258 APGSPVAGKANVFIFPDLNCGNIAYKIAQRLA 289 (333)
T ss_dssp STTCSSTTSCCEEECSSHHHHHHHHHHHHHTS
T ss_pred CCCCccCCcCCEEEECCchHHHHHHHHHHHcc
Confidence 44 789999999999 999887765443
No 61
>1td9_A Phosphate acetyltransferase; structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.75A {Bacillus subtilis} SCOP: c.77.1.5 PDB: 1xco_A
Probab=78.43 E-value=7.4 Score=37.00 Aligned_cols=98 Identities=19% Similarity=0.187 Sum_probs=65.6
Q ss_pred ecHHHHHHHHHHHHHHHHhCC-CCceEEEEeCcccc---cccHHHHHHHHHHhhcCCCeeEe-eEeHHHHHHHHhc----
Q psy8787 175 ITEEASSRVAEFAFEYAKTNN-RSKVTAVHKANIMR---MSDGLFLRCCRDAAEKFPEVKFE-EKYLDTVCLNMVQ---- 245 (364)
Q Consensus 175 ~t~~~~eriar~Af~~A~~~~-~~~Vt~v~KaNv~~---~~~~lf~~~~~~va~~yp~i~~~-~~~vD~~~~~lv~---- 245 (364)
.|.+...++++.+-+++++-| ..||.+..=.+--. .....-++.++.+.+++|++.++ .+-.|++...=+.
T Consensus 179 pt~e~l~~ia~~~~~~~~~~Gi~PrVAlLs~ge~G~~~~~~~~~i~~A~~ll~~~~~~~~v~Gpl~~D~a~~~~~~~~k~ 258 (329)
T 1td9_A 179 PDSQDLAEIAIESANTAKMFDIEPRVAMLSFSTKGSAKSDETEKVADAVKIAKEKAPELTLDGEFQFDAAFVPSVAEKKA 258 (329)
T ss_dssp CCHHHHHHHHHHHHHHHHTTTCCCCEEEECSSSTTSSCSHHHHHHHHHHHHHHHHCTTSCEEEEECHHHHHCHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCeEEEEeCccCCCCCCCchHHHHHHHHHHHhhCCCCEEEeCCcHHHHcCHHHHHhhC
Confidence 477888889999999998754 35687765211111 11124555555555678887765 5568877655553
Q ss_pred --CC--CCccEEEeCCCc-chhhhhhhhhccC
Q psy8787 246 --DP--TQYDVLVMPNLY-GDILSDMCAGLVG 272 (364)
Q Consensus 246 --~P--~~fdVivt~Nl~-GDIlSD~aa~l~G 272 (364)
++ +++||+|++|+| |+|.-=+..-+.|
T Consensus 259 ~~s~~~G~aDvlV~pd~d~GNI~~K~l~~~~~ 290 (329)
T 1td9_A 259 PDSEIKGDANVFVFPSLEAGNIGYKIAQRLGN 290 (329)
T ss_dssp TTSSCSSCCSEEECSSHHHHHHHHHHHHHTTT
T ss_pred CCCccCCCCCEEEECChhHHHHHHHHHHHhcC
Confidence 33 689999999999 9998877655443
No 62
>1vmi_A Putative phosphate acetyltransferase; NP_416953.1, structura genomics, JCSG, protein structure initiative, PSI, joint CE structural genomics; 2.32A {Escherichia coli} SCOP: c.77.1.5
Probab=75.12 E-value=8.7 Score=37.02 Aligned_cols=98 Identities=18% Similarity=0.199 Sum_probs=64.9
Q ss_pred ecHHHHHHHHHHHHHHHHhC-C-CCceEEEEeCcc---cccccHHHHHHHHHHhhcCCCeeEe-eEeHHHHHHHHhc---
Q psy8787 175 ITEEASSRVAEFAFEYAKTN-N-RSKVTAVHKANI---MRMSDGLFLRCCRDAAEKFPEVKFE-EKYLDTVCLNMVQ--- 245 (364)
Q Consensus 175 ~t~~~~eriar~Af~~A~~~-~-~~~Vt~v~KaNv---~~~~~~lf~~~~~~va~~yp~i~~~-~~~vD~~~~~lv~--- 245 (364)
.|.+...+|++.+-++|++- | ..||.+..=.+- -..+...-++.++.+.+++|++.++ .+-.|++...=+.
T Consensus 185 pt~e~l~~ia~~a~~~a~~~~Gi~PrVAlLs~ge~Gs~~~~~~~~i~~A~~llk~~~~~~~v~Gpl~~D~A~~~~~~~~k 264 (355)
T 1vmi_A 185 PTAAQLADIALASAETWRAITGEEPRVAMLSFSSNGSARHPCVANVQQATEIVRERAPKLVVDGELQFDAAFVPEVAAQK 264 (355)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHSSCCEEEEECSCSTTSSCSHHHHHHHHHHHHHHHHCTTSEEEEEECHHHHHCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCCCCCccHHHHHHHHHHHhccCCCCEEEeCCChHHhhCHHHHhhc
Confidence 36777888888899998774 4 457877753221 1111224455555555678987765 5558877654444
Q ss_pred ---CC--CCccEEEeCCCc-chhhhhhhhhccC
Q psy8787 246 ---DP--TQYDVLVMPNLY-GDILSDMCAGLVG 272 (364)
Q Consensus 246 ---~P--~~fdVivt~Nl~-GDIlSD~aa~l~G 272 (364)
++ +.+||+|++|+| |+|.-=+..-+.|
T Consensus 265 ~~~s~~~G~aDvlV~Pd~d~GNI~~K~l~~~~~ 297 (355)
T 1vmi_A 265 APASPLQGKANVMVFPSLEAGNIGYKIAQRLGG 297 (355)
T ss_dssp CTTCTTTTCCSEEECSSHHHHHHHHHHHHHHHC
T ss_pred CCCCccCCCCCEEEECChhHHhHHHHHHHHccC
Confidence 43 689999999999 9998877654443
No 63
>1r5j_A Putative phosphotransacetylase; lactate dehydrogenase-like nucleotide-binding fold, structural genomics, BSGC structure funded by NIH; 2.70A {Streptococcus pyogenes} SCOP: c.77.1.5
Probab=71.72 E-value=16 Score=34.69 Aligned_cols=99 Identities=17% Similarity=0.118 Sum_probs=65.9
Q ss_pred ecHHHHHHHHHHHHHHHHhCC-CCceEEEEeCcccccccH---HHHHHHHHHhhcCCCeeEe-eEeHHHHHHHHhc----
Q psy8787 175 ITEEASSRVAEFAFEYAKTNN-RSKVTAVHKANIMRMSDG---LFLRCCRDAAEKFPEVKFE-EKYLDTVCLNMVQ---- 245 (364)
Q Consensus 175 ~t~~~~eriar~Af~~A~~~~-~~~Vt~v~KaNv~~~~~~---lf~~~~~~va~~yp~i~~~-~~~vD~~~~~lv~---- 245 (364)
.|.+...++++.+-+++++-| ..||.+..=.+.-..... .-++.++.+.+++|++.++ .+-.|++...=+.
T Consensus 183 ~t~e~l~~ia~~~~~~~~~~Gi~PrVAlLs~~~~G~e~~~~~~~i~~A~~llk~~~~~~~v~Gpl~~D~a~~~~~~~~k~ 262 (337)
T 1r5j_A 183 PTAQELAEIAVNTAETAKIFDIDPKIAMLSFSTKGSGKAPQVDKVREATEIATGLNPDLALDGELQFDAAFVPETAAIKA 262 (337)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCCCEEEECSCSTTSSCSHHHHHHHHHHHHHHHHCTTSCEEEEECHHHHHCHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCeEEEEecCccCCCCCCCcHHHHHHHHHHhccCCCcEEEecCcHHHhcCHHHHHhhC
Confidence 477888899999999998744 356776643222221111 2466666566688987765 4458888544432
Q ss_pred --CC--CCccEEEeCCCc-chhhhhhhhhccCC
Q psy8787 246 --DP--TQYDVLVMPNLY-GDILSDMCAGLVGG 273 (364)
Q Consensus 246 --~P--~~fdVivt~Nl~-GDIlSD~aa~l~G~ 273 (364)
+| +++||+|++|++ |+|.-=+..-+.|.
T Consensus 263 ~~s~~~G~aDvlv~p~~d~GnI~~K~l~~~~~~ 295 (337)
T 1r5j_A 263 PDSAVAGQANTFVFPDLQSGNIGYKIAQRLGMF 295 (337)
T ss_dssp CSCSSTTCCCEEECSSHHHHHHHHHHHHHTTCC
T ss_pred CCCccCCCCCEEEECChHHHHHHHHHHHHhcCC
Confidence 22 789999999999 99988777655443
No 64
>1yco_A Branched-chain phosphotransacylase; structural genomics, protein structure initiative, PSI, nysgxrc; 2.40A {Enterococcus faecalis}
Probab=70.44 E-value=22 Score=33.04 Aligned_cols=95 Identities=18% Similarity=0.085 Sum_probs=59.9
Q ss_pred cHHHHHHHHHHHHHHHHhCCC--CceEEEE---eCcccccccHHHHHHHHH--HhhcCCCeeEe-eEeHHHHHHHHhc--
Q psy8787 176 TEEASSRVAEFAFEYAKTNNR--SKVTAVH---KANIMRMSDGLFLRCCRD--AAEKFPEVKFE-EKYLDTVCLNMVQ-- 245 (364)
Q Consensus 176 t~~~~eriar~Af~~A~~~~~--~~Vt~v~---KaNv~~~~~~lf~~~~~~--va~~yp~i~~~-~~~vD~~~~~lv~-- 245 (364)
|.+.-.+|+..|-++|+.-|. .||-+.. |.|- ....-++..+- ..++.|++.++ ++-.|++.-.=+.
T Consensus 126 ~~e~l~~ia~~a~~~a~~lGi~~PkVAlLs~~~~g~~---~~~~~~~a~~l~k~l~~~~~~~~dG~i~~D~A~~~~~~~~ 202 (279)
T 1yco_A 126 TQATLIEIVENAKEVAQKLGLHHPKIALLSAAENFNP---KMPSSVLAKEVTAHFNDQQEATVFGPLSLDLATSEEAVAH 202 (279)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSSCEEEEECSCSSCCT---TCHHHHHHHHHHHHHSSCSSCEEEEEECHHHHHCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCeEEEEeccccCCC---CChHHHHHHHHHHHHHhCCCCEEEeeCcHHhhcCHHHHHh
Confidence 356677788889999987654 5677764 3331 11233333322 12233887664 5557866543333
Q ss_pred ----CC--CCccEEEeCCCc-chhhhhhhhhccCC
Q psy8787 246 ----DP--TQYDVLVMPNLY-GDILSDMCAGLVGG 273 (364)
Q Consensus 246 ----~P--~~fdVivt~Nl~-GDIlSD~aa~l~G~ 273 (364)
++ +.-||+|+||+| |+|+--+.-.+.|+
T Consensus 203 k~~~s~~~G~adVlV~Pd~~aGNi~~K~~~~~~~~ 237 (279)
T 1yco_A 203 KRYSGPIMGDADILVVPTIDVGNCLYKSLTLFGHA 237 (279)
T ss_dssp TTCCSSCSSCCSEEECSSHHHHHHHHHHHHHHSCC
T ss_pred cCCCCccCCCCCEEEECCchHHHHHHHHHHHhCCC
Confidence 43 578999999998 99998887766544
No 65
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti}
Probab=69.10 E-value=0.2 Score=49.97 Aligned_cols=77 Identities=9% Similarity=-0.018 Sum_probs=46.1
Q ss_pred ccceeEeeccchhhhcccccCCCCCCCCccc-----cCCCCc-CH-------HHHHHHHHHHHhhcCCC--c-eeEEEEe
Q psy8787 18 TVETISYLTLSELISAQYINTPSISQWSWRG-----LKVQGL-GE-------FNLYANVRPCRSLEGYP--T-LYDDVDV 81 (364)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~-----i~GDGI-Gp-------~EV~a~~r~Vl~a~g~~--i-~~~~vdi 81 (364)
+++.+.-.+...+..+++++.++.++|.+.- +|+ |. .+ |++|+|+||+ -..++| + .| .+|+
T Consensus 75 tg~~lp~etl~aik~~da~LkGav~tP~~~~~~e~~l~~-~~~s~n~~LRk~LdlyanvRPv-~~~~ip~~~~~~-~~Di 151 (427)
T 3us8_A 75 TDDQVTIDAANAIKKHGVGVKCATITPDEGRVEEFKLKK-MWKSPNGTIRNILGGVIFREPI-ICKNVPRLVPGW-TKPI 151 (427)
T ss_dssp TTTHHHHHHHHHHHHHSEEEECCCCCCCHHHHHHHTCSS-CCCCHHHHHHHHHCSEEEEEEC-CCTTSCCSSTTC-CSCE
T ss_pred hCCcCCHHHHHHHHHCCEEEECCccCCCccccccccccc-cccCchHHHHHHhCCeEEecce-eccCCCCCCCCC-CCCE
Confidence 3444444445555667888888888888742 332 33 33 3444455554 111222 1 23 4899
Q ss_pred eeeeecCCCCccccch
Q psy8787 82 VTIRENTEGEYSGIEH 97 (364)
Q Consensus 82 g~~re~~~G~Y~~lp~ 97 (364)
.++||+++|.|++++.
T Consensus 152 vIvREnteg~Y~g~e~ 167 (427)
T 3us8_A 152 IVGRHAFGDQYRATDF 167 (427)
T ss_dssp EEEEECSSGGGGCEEE
T ss_pred EEEEeCCCCccCCcee
Confidence 9999999999988643
No 66
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A
Probab=67.92 E-value=0.15 Score=50.53 Aligned_cols=79 Identities=9% Similarity=-0.054 Sum_probs=40.7
Q ss_pred ccceeEeeccchhhhcccccCCCCCCCCccc-----cCCCCcCH-------HHHHHHHHHHHhhcCCCcee--EEEEeee
Q psy8787 18 TVETISYLTLSELISAQYINTPSISQWSWRG-----LKVQGLGE-------FNLYANVRPCRSLEGYPTLY--DDVDVVT 83 (364)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~-----i~GDGIGp-------~EV~a~~r~Vl~a~g~~i~~--~~vdig~ 83 (364)
|++.+.-.+...+..+++...++..+|.+.- +++.-.+| |++|++.||+ ...+++-.+ ..+|+.+
T Consensus 52 tg~~lp~etl~aik~~~v~lkGa~~tP~~~~~~~~~l~~~~~s~n~~LR~~Ldlyan~rPv-~~~~i~~~~~~~~~DivI 130 (402)
T 4aoy_A 52 TEDQVTIDAARAIQKYGVGVKCATITPNAQRVEEYNLKKMWKSPNGTIRAILDGTVFRAPI-VVNSIKPFVKGWKKPISI 130 (402)
T ss_dssp HTTHHHHHHHHHHHHHSEEEECCCCCCCHHHHHHTTCSSCCCCHHHHHHHHHTCEEEEEEC-CCTTSCCSBTTCCBCCEE
T ss_pred hCCcCCHHHHHHHHHCCEEEECcccCCCccccccccccccccChHHHHHHHhCCeEEeeeE-eccCCCCcCCCCCCCEEE
Confidence 3444444445555566787777788887632 23222344 3444444444 334443222 2579999
Q ss_pred eeecCCCCccccch
Q psy8787 84 IRENTEGEYSGIEH 97 (364)
Q Consensus 84 ~re~~~G~Y~~lp~ 97 (364)
+||+++|.|++++.
T Consensus 131 vREnteg~Y~g~e~ 144 (402)
T 4aoy_A 131 ARHAYGDVYKNVEY 144 (402)
T ss_dssp EEC------CCEEE
T ss_pred EEeccCCeecCcee
Confidence 99999999988754
No 67
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=65.62 E-value=11 Score=33.42 Aligned_cols=72 Identities=11% Similarity=0.052 Sum_probs=41.1
Q ss_pred HHHHHHHHh--CCCCceEEEEeCcccccccHHHHHHHHHHhhcCCCee-EeeEe-------HH---HHHHHHhcCCC---
Q psy8787 185 EFAFEYAKT--NNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVK-FEEKY-------LD---TVCLNMVQDPT--- 248 (364)
Q Consensus 185 r~Af~~A~~--~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp~i~-~~~~~-------vD---~~~~~lv~~P~--- 248 (364)
+.|.++..+ +|.++|.++.-..-.. +.....+-+++..+++|+++ ++..+ .+ .++.++++...
T Consensus 112 ~~~~~~l~~~~~g~~~i~~i~~~~~~~-~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 190 (291)
T 3l49_A 112 AELALQMVADLGGKGNVLVFNGFYSVP-VCKIRYDQMKYVLEAFPDVKIIEPELRDVIPNTIQSAYSNVTDMLTKYPNEG 190 (291)
T ss_dssp HHHHHHHHHHHTTCEEEEEECSCTTSH-HHHHHHHHHHHHHHTCTTEEECSSCBCCCSSSHHHHHHHHHHHHHHHCCSTT
T ss_pred HHHHHHHHHHcCCCceEEEEeCCCCCc-hHHHHHHHHHHHHHHCCCCEEEeeeccCCCCCCHHHHHHHHHHHHHhCCCcC
Confidence 344444444 5677888885322111 22345566777677888877 33321 11 24455555444
Q ss_pred CccEEEeCC
Q psy8787 249 QYDVLVMPN 257 (364)
Q Consensus 249 ~fdVivt~N 257 (364)
++|.|+|.|
T Consensus 191 ~~~ai~~~~ 199 (291)
T 3l49_A 191 DVGAIWACW 199 (291)
T ss_dssp SCCEEEESS
T ss_pred CcCEEEECC
Confidence 899999987
No 68
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A*
Probab=63.23 E-value=0.22 Score=49.26 Aligned_cols=78 Identities=10% Similarity=-0.063 Sum_probs=49.0
Q ss_pred ccceeEeeccchhhhcccccCCCCCCCCccccCC-----CCcCH-------HHHHHHHHHHHhhcCCCcee--EEEEeee
Q psy8787 18 TVETISYLTLSELISAQYINTPSISQWSWRGLKV-----QGLGE-------FNLYANVRPCRSLEGYPTLY--DDVDVVT 83 (364)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~i~G-----DGIGp-------~EV~a~~r~Vl~a~g~~i~~--~~vdig~ 83 (364)
+|+.+.-.+...+..+++++.++.++|.+..+|. .-.++ |++|+|+||+. ..+++-.. ..+|+.+
T Consensus 51 ~g~~lp~etl~~~k~~da~LkGav~tP~~~~~~~~~~~~~~~s~~l~LR~~ldlyan~RPv~-~~~~~~~~~~~~~divI 129 (402)
T 2uxq_A 51 TNDQITIDAAEAIKKYGVGVKNATITPNQDRVEEYGLKEQWKSPNATVRAMLDGTVFRKPIM-VKNIKPSVRSWQKPIVV 129 (402)
T ss_dssp TTTHHHHHHHHHHHHHSEEEECCCCCCCHHHHHHHTCSSCCCCHHHHHHHHHCCEEEEEECC-CTTCCCSBTTCCSCCEE
T ss_pred hCCcCCHHHHHHHHhCCEEEECCccCCCcccCccccccccccCchHHHHHHhCCeEEEEEEE-cCCCCCCCCCCCCCeEE
Confidence 3444444455556677888888899887643322 22344 56666666664 34443211 2589999
Q ss_pred eeecCCCCccccc
Q psy8787 84 IRENTEGEYSGIE 96 (364)
Q Consensus 84 ~re~~~G~Y~~lp 96 (364)
+||+++|.|++++
T Consensus 130 vRE~teg~Y~g~e 142 (402)
T 2uxq_A 130 GRHAYGDFYKNAE 142 (402)
T ss_dssp EEECSCGGGGCEE
T ss_pred EeccCCCcccCcc
Confidence 9999999998653
No 69
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=56.89 E-value=18 Score=31.66 Aligned_cols=80 Identities=13% Similarity=0.079 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhhcCCCeeEeeEe--------HHHHHHHHhcCCC
Q psy8787 177 EEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKY--------LDTVCLNMVQDPT 248 (364)
Q Consensus 177 ~~~~eriar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp~i~~~~~~--------vD~~~~~lv~~P~ 248 (364)
+.+.+..+++..+...++|.+++.++.-..-.. +.....+-+++..+++|++++.... .-..+.++++...
T Consensus 108 ~~~g~~~~~~l~~~~~~~G~~~i~~i~~~~~~~-~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 186 (276)
T 3ksm_A 108 YAAGQLAARALLATLDLSKERNIALLRLRAGNA-STDQREQGFLDVLRKHDKIRIIAAPYAGDDRGAARSEMLRLLKETP 186 (276)
T ss_dssp HHHHHHHHHHHHHHSCTTSCEEEEECBCCTTCH-HHHHHHHHHHHHHTTCTTEEEEECCBCCSSHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHhcCcCCCceEEEEEcCCCch-hHHHHHHHHHHHHHhCCCcEEEEEecCCCcHHHHHHHHHHHHHhCC
Confidence 334444444443332211677888775322111 2345566677777788888765432 1134556666556
Q ss_pred CccEEEeCC
Q psy8787 249 QYDVLVMPN 257 (364)
Q Consensus 249 ~fdVivt~N 257 (364)
++|.|+|.|
T Consensus 187 ~~~ai~~~~ 195 (276)
T 3ksm_A 187 TIDGLFTPN 195 (276)
T ss_dssp CCCEEECCS
T ss_pred CceEEEECC
Confidence 789999987
No 70
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=51.28 E-value=11 Score=36.49 Aligned_cols=59 Identities=24% Similarity=0.267 Sum_probs=35.5
Q ss_pred HHhCCCCceEEEEeCcccccccHHHHHHHHHHhh--cCC-CeeEeeEeHHHHHHHHhcCCCCccEEEeCCCcchhh
Q psy8787 191 AKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAE--KFP-EVKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDIL 263 (364)
Q Consensus 191 A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~--~yp-~i~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~GDIl 263 (364)
|.+.|.++|+.|++.++. +.++++.+ .+. .|++-+--+.. +.-|++|||||++ ++|..|
T Consensus 101 Aa~aGA~~V~ave~s~~~--------~~a~~~~~~n~~~~~i~~i~~~~~~-----~~lpe~~DvivsE-~~~~~l 162 (376)
T 4hc4_A 101 CAQAGARRVYAVEASAIW--------QQAREVVRFNGLEDRVHVLPGPVET-----VELPEQVDAIVSE-WMGYGL 162 (376)
T ss_dssp HHHTTCSEEEEEECSTTH--------HHHHHHHHHTTCTTTEEEEESCTTT-----CCCSSCEEEEECC-CCBTTB
T ss_pred HHHhCCCEEEEEeChHHH--------HHHHHHHHHcCCCceEEEEeeeeee-----ecCCccccEEEee-cccccc
Confidence 345578899999977532 22334332 233 36666554433 3568999999985 444444
No 71
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=50.75 E-value=50 Score=30.03 Aligned_cols=73 Identities=11% Similarity=-0.022 Sum_probs=42.1
Q ss_pred HHHHHHHHHh--CCCCceEEEEeCcccccccHHHHHHHHHHhhcCCCeeEeeEe-----HH---HHHHHHhcC-CCCccE
Q psy8787 184 AEFAFEYAKT--NNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKY-----LD---TVCLNMVQD-PTQYDV 252 (364)
Q Consensus 184 ar~Af~~A~~--~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp~i~~~~~~-----vD---~~~~~lv~~-P~~fdV 252 (364)
.+.|.++..+ +|.++|.++.-..-.. +.....+-|++..+++|++++.... .+ .++.+|++. ..++|.
T Consensus 122 g~~a~~~L~~~~~G~~~I~~i~g~~~~~-~~~~R~~Gf~~al~~~pgi~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a 200 (332)
T 2rjo_A 122 GEETATQLFKSMGGKGGVVALGGIFSNV-PAIERKAGLDAALKKFPGIQLLDFQVADWNSQKAFPIMQAWMTRFNSKIKG 200 (332)
T ss_dssp HHHHHHHHHHHTTTCEEEEEEECCTTCH-HHHHHHHHHHHHHHTCTTEEEEEEEECTTCHHHHHHHHHHHHHHHGGGEEE
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCCCCc-cHHHHHHHHHHHHHhCCCcEEEeeccCCCCHHHHHHHHHHHHHhcCCCeeE
Confidence 3344444444 5777888775321111 2234455666666778888765432 11 244566665 557899
Q ss_pred EEeCC
Q psy8787 253 LVMPN 257 (364)
Q Consensus 253 ivt~N 257 (364)
|+|.|
T Consensus 201 I~~~n 205 (332)
T 2rjo_A 201 VWAAN 205 (332)
T ss_dssp EEESS
T ss_pred EEECC
Confidence 99977
No 72
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=50.15 E-value=38 Score=34.30 Aligned_cols=64 Identities=13% Similarity=0.212 Sum_probs=39.1
Q ss_pred HHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhhcCCCeeEeeEeHHHHHHHHhcCCCCccEEEeCCCc
Q psy8787 187 AFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLDTVCLNMVQDPTQYDVLVMPNLY 259 (364)
Q Consensus 187 Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp~i~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~ 259 (364)
+..+|+. | -.||.+|= + .--.++++.-|++.+.+.++++..|.-...--..+++||||+|.-++
T Consensus 81 ~~~la~~-g-a~V~giD~------~-~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~~ 144 (569)
T 4azs_A 81 SLSLASK-G-ATIVGIDF------Q-QENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSVF 144 (569)
T ss_dssp HHHHHHT-T-CEEEEEES------C-HHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESCH
T ss_pred HHHHHhC-C-CEEEEECC------C-HHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcch
Confidence 3445544 5 47999982 2 34456677767776655555555544321112357899999998775
No 73
>3uf6_A LMO1369 protein; structural genomics, the center for structural genomics of I diseases, csgid, unknown function, transferase; HET: COD; 1.80A {Listeria monocytogenes} PDB: 3tng_A* 3u9e_A*
Probab=49.50 E-value=53 Score=30.60 Aligned_cols=96 Identities=16% Similarity=0.176 Sum_probs=59.4
Q ss_pred cHHHHHHHHHHHHHHHHhCCC--CceEEEEeCcccccccHHHHHHHHHHhhc-CCCeeEee-EeHHHHHHHHh------c
Q psy8787 176 TEEASSRVAEFAFEYAKTNNR--SKVTAVHKANIMRMSDGLFLRCCRDAAEK-FPEVKFEE-KYLDTVCLNMV------Q 245 (364)
Q Consensus 176 t~~~~eriar~Af~~A~~~~~--~~Vt~v~KaNv~~~~~~lf~~~~~~va~~-yp~i~~~~-~~vD~~~~~lv------~ 245 (364)
|.+.-..|+..|-++|+.-|- .||-+..=.+--......-++.. ++.++ .|++.++- +..|++...=+ .
T Consensus 144 ~~e~la~ia~~aa~~ar~~Gie~PkVAlLS~s~~gs~~~~~~~~A~-~llk~~~~~~~vdGel~~D~Al~~~~~~~k~p~ 222 (291)
T 3uf6_A 144 KTKEKIAITENALAVAHQIGITNPKIALLSAVEEVTAKMPSTLEAQ-EVVQHFGNQISVSGPLALDVAISKEAALHKGIT 222 (291)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCSCCEEEECSCSSCCTTSHHHHHHH-HHHHHHTTTSCEEEEECHHHHHCHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCccCCcCchHHHHHH-HHHHhhCCCCEEEecchHHHhcCHHHHHhhCCC
Confidence 456677788888899987553 47776543221110011223333 34444 48887765 45888753322 2
Q ss_pred CC--CCccEEEeCCCc-chhhhhhhhhccC
Q psy8787 246 DP--TQYDVLVMPNLY-GDILSDMCAGLVG 272 (364)
Q Consensus 246 ~P--~~fdVivt~Nl~-GDIlSD~aa~l~G 272 (364)
+| ++.||+|.||+. |+|+--+...+.|
T Consensus 223 s~vaG~Anvli~P~l~agNi~yK~l~~~~~ 252 (291)
T 3uf6_A 223 DSSAGEADILIAPNIETGNALYKSLVYFAG 252 (291)
T ss_dssp CTTTTCCSEEECSSHHHHHHHHHHHHHHSC
T ss_pred CccCCCCCEEEECChHHHHHHHHHHHHhcC
Confidence 22 578999999995 9999988876554
No 74
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=48.66 E-value=46 Score=24.93 Aligned_cols=51 Identities=22% Similarity=0.212 Sum_probs=38.8
Q ss_pred EecHHHHHHHHHHHHHHHHhCCCCceEEEE-eCcccccccHHHHHHHHHHhhcCCCee
Q psy8787 174 LITEEASSRVAEFAFEYAKTNNRSKVTAVH-KANIMRMSDGLFLRCCRDAAEKFPEVK 230 (364)
Q Consensus 174 ~~t~~~~eriar~Af~~A~~~~~~~Vt~v~-KaNv~~~~~~lf~~~~~~va~~yp~i~ 230 (364)
=.|.+++.+.....++-|..+|.+.|.++| |. .|.-++.+.+.-+++|.|.
T Consensus 11 G~~~~eA~~~l~~fl~~a~~~g~~~v~IIHGkG------~GvLr~~V~~~L~~~~~V~ 62 (83)
T 2zqe_A 11 GLTVAEALLEVDQALEEARALGLSTLRLLHGKG------TGALRQAIREALRRDKRVE 62 (83)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCSEEEEECCST------TSHHHHHHHHHHHHCTTEE
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCC------chHHHHHHHHHHhcCCcee
Confidence 356778888888889999988888999999 33 2667777777666677664
No 75
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=48.13 E-value=54 Score=28.43 Aligned_cols=73 Identities=7% Similarity=0.018 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhhcCCCeeEeeEe-----HH---HHHHHHhcCCC-CccEE
Q psy8787 183 VAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKY-----LD---TVCLNMVQDPT-QYDVL 253 (364)
Q Consensus 183 iar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp~i~~~~~~-----vD---~~~~~lv~~P~-~fdVi 253 (364)
..+.|.++-.++|.+++.++.-..-.. +.....+-|++..++++ ++..... .+ .++.++++... .+|.|
T Consensus 107 ~~~~a~~~L~~~G~~~i~~i~~~~~~~-~~~~R~~gf~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ai 184 (272)
T 3o74_A 107 ASRQLAASLLSSAPRSIALIGARPELS-VSQARAGGFDEALQGYT-GEVRRYQGEAFSRECGQRLMQQLIDDLGGLPDAL 184 (272)
T ss_dssp HHHHHHHHHHTTCCSEEEEEEECTTSH-HHHHHHHHHHHHTTTCC-SEEEEEEESSSSHHHHHHHHHHHHHHHTSCCSEE
T ss_pred HHHHHHHHHHHCCCcEEEEEecCCCCc-cHHHHHHHHHHHHHHcC-CChheeecCCCCHHHHHHHHHHHHhcCCCCCcEE
Confidence 445566677777888888775432221 22345566666666664 4333222 11 34556665544 79999
Q ss_pred EeCC
Q psy8787 254 VMPN 257 (364)
Q Consensus 254 vt~N 257 (364)
+|.|
T Consensus 185 ~~~~ 188 (272)
T 3o74_A 185 VTTS 188 (272)
T ss_dssp EESS
T ss_pred EEeC
Confidence 9987
No 76
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=47.95 E-value=25 Score=28.68 Aligned_cols=26 Identities=35% Similarity=0.420 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHhCCCCceEEEEe
Q psy8787 178 EASSRVAEFAFEYAKTNNRSKVTAVHK 204 (364)
Q Consensus 178 ~~~eriar~Af~~A~~~~~~~Vt~v~K 204 (364)
..+++.+++|.++|+..+ .+|+++|=
T Consensus 36 ~~s~~al~~A~~la~~~~-a~l~llhV 61 (155)
T 3dlo_A 36 DRAERVLRFAAEEARLRG-VPVYVVHS 61 (155)
T ss_dssp HHHHHHHHHHHHHHHHHT-CCEEEEEE
T ss_pred HHHHHHHHHHHHHHHhcC-CEEEEEEE
Confidence 568999999999999875 57888774
No 77
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=47.68 E-value=71 Score=28.80 Aligned_cols=143 Identities=14% Similarity=0.118 Sum_probs=71.2
Q ss_pred cchhHHHHhhhcCEEEEcccccc-hhhhc-ccceeeeeeeccCCCCCCCCCccEEEEccCCCcc-ccCceeeeeCCEEEE
Q psy8787 95 IEHEIVDGVCNSNYATKWFSERG-ASVEF-NLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGE-YSGIEHEIVDGVVQS 171 (364)
Q Consensus 95 lp~etl~~ik~~daiLkGav~~g-LR~~l-dlyanvRP~~~~pg~~~~~~~iD~vIvREnteg~-Y~g~~~~~~~~~a~~ 171 (364)
..+..++..+.+|.++.|.-+.+ +++.| +-.+. +=++ .-+.+++||+...... +... .-+...
T Consensus 112 ~~~~I~~~a~~~DliV~G~~g~~~~~~~~~Gs~~~-~vl~--------~~~~PVlvv~~~~~~~~~~~~-----~~Ilv~ 177 (309)
T 3cis_A 112 AVPTLVDMSKDAVLMVVGCLGSGRWPGRLLGSVSS-GLLR--------HAHCPVVIIHDEDSVMPHPQQ-----APVLVG 177 (309)
T ss_dssp HHHHHHHHGGGEEEEEEESSCTTCCTTCCSCHHHH-HHHH--------HCSSCEEEECTTCCCSCSSCC-----CCEEEE
T ss_pred HHHHHHHHhcCCCEEEECCCCCccccccccCcHHH-HHHH--------hCCCCEEEEcCCcccCCCCCC-----CeEEEE
Confidence 33555666678899999987533 32211 10000 0000 1245677777654210 1111 112222
Q ss_pred EEEecHHHHHHHHHHHHHHHHhCCCCceEEEEeCccccc--------------ccHHHHHHHHHHhhcCCCeeEeeEe--
Q psy8787 172 IKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRM--------------SDGLFLRCCRDAAEKFPEVKFEEKY-- 235 (364)
Q Consensus 172 ~~~~t~~~~eriar~Af~~A~~~~~~~Vt~v~KaNv~~~--------------~~~lf~~~~~~va~~yp~i~~~~~~-- 235 (364)
+. -...+++.+++|+++|+..+ .+|+++|=..-... ......+..+++.++|+++.++...
T Consensus 178 ~D--~s~~s~~al~~a~~la~~~~-a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 254 (309)
T 3cis_A 178 VD--GSSASELATAIAFDEASRRN-VDLVALHAWSDVDVSEWPGIDWPATQSMAEQVLAERLAGWQERYPNVAITRVVVR 254 (309)
T ss_dssp CC--SSHHHHHHHHHHHHHHHHTT-CCEEEEEESCSSCCTTCSSCCHHHHHHHHHHHHHHHHTTHHHHCTTSCEEEEEES
T ss_pred eC--CChHHHHHHHHHHHHHHhcC-CEEEEEEEeecccccCCCcccHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEEEc
Confidence 22 12468899999999998875 57888874322110 0011222223333456777666543
Q ss_pred --HHHHHHHHhcCCCCccEEEeCC
Q psy8787 236 --LDTVCLNMVQDPTQYDVLVMPN 257 (364)
Q Consensus 236 --vD~~~~~lv~~P~~fdVivt~N 257 (364)
+.....+.++ +.|.||+..
T Consensus 255 g~~~~~I~~~a~---~adliV~G~ 275 (309)
T 3cis_A 255 DQPARQLVQRSE---EAQLVVVGS 275 (309)
T ss_dssp SCHHHHHHHHHT---TCSEEEEES
T ss_pred CCHHHHHHHhhC---CCCEEEECC
Confidence 2233344444 678777644
No 78
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=47.43 E-value=60 Score=28.56 Aligned_cols=80 Identities=11% Similarity=0.114 Sum_probs=44.2
Q ss_pred cHHHHHHHHHHHHHHHH-h-CCCCc--eEEEE-eCcccccccHHHHHHHHHHhhcCCCeeEeeEe-----HH---HHHHH
Q psy8787 176 TEEASSRVAEFAFEYAK-T-NNRSK--VTAVH-KANIMRMSDGLFLRCCRDAAEKFPEVKFEEKY-----LD---TVCLN 242 (364)
Q Consensus 176 t~~~~eriar~Af~~A~-~-~~~~~--Vt~v~-KaNv~~~~~~lf~~~~~~va~~yp~i~~~~~~-----vD---~~~~~ 242 (364)
...+.+..+++..+... . +|.++ |.++. ..+.. ......+-|++..+++|++++...+ .+ .++.+
T Consensus 107 ~~~~~~~~~~~L~~~~g~~~~G~r~i~i~~l~g~~~~~--~~~~R~~gf~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 184 (290)
T 2fn9_A 107 NYYGGVLAGEYFVKFLKEKYPDAKEIPYAELLGILSAQ--PTWDRSNGFHSVVDQYPEFKMVAQQSAEFDRDTAYKVTEQ 184 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSCSCEEEEEEECCTTCH--HHHHHHHHHHHHHTTSTTEEEEEEEECTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCcccceeEEEEEcCCCCc--hHHHHHHHHHHHHHhCCCCEEEEeccCCCCHHHHHHHHHH
Confidence 34555656666555422 1 14566 65554 22221 2234556667766778887654322 12 24556
Q ss_pred HhcCCCCccEEEeCC
Q psy8787 243 MVQDPTQYDVLVMPN 257 (364)
Q Consensus 243 lv~~P~~fdVivt~N 257 (364)
+++....+|.|+|.|
T Consensus 185 ll~~~~~~~ai~~~~ 199 (290)
T 2fn9_A 185 ILQAHPEIKAIWCGN 199 (290)
T ss_dssp HHHHCTTCCEEEESS
T ss_pred HHHhCCCCcEEEECC
Confidence 666555689999987
No 79
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=46.93 E-value=39 Score=29.80 Aligned_cols=81 Identities=10% Similarity=0.161 Sum_probs=46.9
Q ss_pred cHHHHHHHHHHHHHH--HHh-CCCCceEEEEeCcccccccHHHHHHHHHHhhcCCCeeEeeEeH--------HHHHHHHh
Q psy8787 176 TEEASSRVAEFAFEY--AKT-NNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYL--------DTVCLNMV 244 (364)
Q Consensus 176 t~~~~eriar~Af~~--A~~-~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp~i~~~~~~v--------D~~~~~lv 244 (364)
...+....+++..+. -.+ +..++|.++.-..-. .+.....+-|++..+++|++++..... -.++.+++
T Consensus 112 ~~~~g~~~~~~l~~~~~g~~~~~~~~i~~i~g~~~~-~~~~~R~~gf~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~l 190 (293)
T 3l6u_A 112 NQMIGEQLASYIKNELIKQTGRSTGRIVEITGTANV-YTTNERHRGFLKGIENEPTLSIVDSVSGNYDPVTSERVMRQVI 190 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCSCEEEEEEECSTTC-HHHHHHHHHHHHHHTTCTTEEEEEEEECTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCceEEEEECCCCC-chHHHHHHHHHHHHHhCCCcEEeeeccCCCCHHHHHHHHHHHH
Confidence 445566666665553 222 111277777532111 123455567777777888888765321 13456777
Q ss_pred cCCCCccEEEeCC
Q psy8787 245 QDPTQYDVLVMPN 257 (364)
Q Consensus 245 ~~P~~fdVivt~N 257 (364)
+....+|.|+|.|
T Consensus 191 ~~~~~~~ai~~~~ 203 (293)
T 3l6u_A 191 DSGIPFDAVYCHN 203 (293)
T ss_dssp HTTCCCSEEEESS
T ss_pred HhCCCCCEEEECC
Confidence 7767899999987
No 80
>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3mas_B* 3map_A* 3mar_A* 3mas_A* 3inm_A* 2cmj_A* 2cmv_A*
Probab=46.19 E-value=0.42 Score=47.42 Aligned_cols=77 Identities=6% Similarity=-0.115 Sum_probs=47.3
Q ss_pred ccceeEeeccchhhhcccccCCCCCCCCccccCC-----CCcCH-------HHHHHHHHHHHhhcCCC--ceeEEEEeee
Q psy8787 18 TVETISYLTLSELISAQYINTPSISQWSWRGLKV-----QGLGE-------FNLYANVRPCRSLEGYP--TLYDDVDVVT 83 (364)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~i~G-----DGIGp-------~EV~a~~r~Vl~a~g~~--i~~~~vdig~ 83 (364)
+|+.+.-.+...+..+++++.++.++|.+..+|. .-.++ |++|+|+||+.- .+++ +.-..+|+.+
T Consensus 53 ~g~~lp~etl~~ik~~da~LkGav~tP~~~~~~~~~~~~~~~s~~l~LR~~ldlyan~RPv~~-~~~~~~~~~~~~divI 131 (413)
T 1lwd_A 53 TNDQVTIDSALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIIC-KNIPRLVPGWTKPITI 131 (413)
T ss_dssp TTTHHHHHHHHHHHHHSEEEECCCCCCCHHHHHHHTCSSCCCCHHHHHHHHHCSEEEEEECCC-TTSCCSSTTCCSCEEE
T ss_pred cCCcCcHHHHHHHHHCCEEEECCccCCCcccCccccccccccCccHHHHHhcCCEEEEeeeec-cCCCCCCCCCCCceEE
Confidence 3444444455556677888888899987654332 22344 556666666521 2222 1112488999
Q ss_pred eeecCCCCcccc
Q psy8787 84 IRENTEGEYSGI 95 (364)
Q Consensus 84 ~re~~~G~Y~~l 95 (364)
+||+++|.|+++
T Consensus 132 vRe~t~g~Y~g~ 143 (413)
T 1lwd_A 132 GRHAHGDQYKAT 143 (413)
T ss_dssp EEECSSGGGGCE
T ss_pred EecccCCccCCc
Confidence 999999999865
No 81
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima}
Probab=41.96 E-value=0.49 Score=46.75 Aligned_cols=77 Identities=10% Similarity=-0.013 Sum_probs=47.0
Q ss_pred ccceeEeeccchhhhcccccCCCCCCCCccccCC-----CCcCH-------HHHHHHHHHHHhhcCCCcee--EEEEeee
Q psy8787 18 TVETISYLTLSELISAQYINTPSISQWSWRGLKV-----QGLGE-------FNLYANVRPCRSLEGYPTLY--DDVDVVT 83 (364)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~i~G-----DGIGp-------~EV~a~~r~Vl~a~g~~i~~--~~vdig~ 83 (364)
+|+.+.-.+...+..+++++.++.++|.+..+|. .--++ |++|+++||+. ..+++-.+ ..+|+.+
T Consensus 52 ~g~~lp~etl~~ik~~da~lkGav~tP~~~~~~~~~~~~~~~s~~l~LR~~ldlyan~RPv~-~~~~~~~~~~~~~divi 130 (399)
T 1zor_A 52 TDDQITIEAAKAIKKYGVGVKCATITPDAERVKEYNLKKAWKSPNATIRAYLDGTVFRKPIM-VKNVPPLVKRWKKPIII 130 (399)
T ss_dssp TTTHHHHHHHHHHHHHSEEEECCCCCCCHHHHHHHTCSSCCCCHHHHHHHHHTCEEEEEECC-BTTBCCSBTTCCSCCEE
T ss_pred cCCcCcHHHHHHHHHCCEEEEcCccCCCcccCccccccccccCchHHHHHHhCCEEEEEEee-cCCCCCcccCcCcccee
Confidence 3444444455556677888888888887543322 12344 56666666664 33333111 2488889
Q ss_pred eeecCCCCcccc
Q psy8787 84 IRENTEGEYSGI 95 (364)
Q Consensus 84 ~re~~~G~Y~~l 95 (364)
+|++++|.|.++
T Consensus 131 ~Re~t~g~Y~g~ 142 (399)
T 1zor_A 131 GRHAYGDIYNAV 142 (399)
T ss_dssp EECCSSGGGGCE
T ss_pred eecccCCCcCCc
Confidence 999999999776
No 82
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=41.92 E-value=82 Score=27.94 Aligned_cols=75 Identities=13% Similarity=0.199 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhhcC----CCeeEee----------EeHHHHHHHHhcCC
Q psy8787 182 RVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKF----PEVKFEE----------KYLDTVCLNMVQDP 247 (364)
Q Consensus 182 riar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~y----p~i~~~~----------~~vD~~~~~lv~~P 247 (364)
..++.|.++-.++|.+++.++.-..-.. +.....+-+++..+++ ....+.. -++..++.++++..
T Consensus 117 ~~g~~a~~~L~~~G~~~I~~i~~~~~~~-~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 195 (301)
T 3miz_A 117 QGARDLTRYLLERGHRRIGYIRLNPILL-GAELRLDAFRRTTSEFGLTENDLSISLGMDGPVGAENNYVFAAATEMLKQD 195 (301)
T ss_dssp HHHHHHHHHHHTTTCCSEEEEECCTTSH-HHHHHHHHHHHHHHHHTCCGGGEEEEECEESSTTSCEECHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHcCCCeEEEEecCccch-hHHHHHHHHHHHHHHcCCCCCcceEEEcCCCCcCccccHHHHHHHHHHcCC
Confidence 3455566666677888888876332211 1223333344333322 1111111 11226677777777
Q ss_pred CCccEEEeCC
Q psy8787 248 TQYDVLVMPN 257 (364)
Q Consensus 248 ~~fdVivt~N 257 (364)
.++|.|+|.|
T Consensus 196 ~~~~ai~~~~ 205 (301)
T 3miz_A 196 DRPTAIMSGN 205 (301)
T ss_dssp TCCSEEEESS
T ss_pred CCCcEEEECC
Confidence 7899999987
No 83
>4e4r_A Phosphate acetyltransferase; structural genomics, EUTD, center for structural genomics of infectious diseases, csgid; HET: TRS; 1.44A {Staphylococcus aureus subsp}
Probab=41.62 E-value=42 Score=31.89 Aligned_cols=99 Identities=16% Similarity=0.078 Sum_probs=62.2
Q ss_pred cHHHHHHHHHHHHHHHHhCC-CCceEEEEeCcccc-c--ccHHHHHHHHHHhhcCC----CeeEee-EeHHHHHHHH---
Q psy8787 176 TEEASSRVAEFAFEYAKTNN-RSKVTAVHKANIMR-M--SDGLFLRCCRDAAEKFP----EVKFEE-KYLDTVCLNM--- 243 (364)
Q Consensus 176 t~~~~eriar~Af~~A~~~~-~~~Vt~v~KaNv~~-~--~~~lf~~~~~~va~~yp----~i~~~~-~~vD~~~~~l--- 243 (364)
|.+.-..|+..|-++|+.-| ..||-+..=.+.-. . +...-++..+-+.+.+| ++.++- +-.|++.-.=
T Consensus 177 ~~e~l~~ia~~a~~~a~~~Gi~PkVAlLs~s~~Gs~~~~~~~~~~~A~~llk~~~~~~~~~~~vdGpl~~D~A~~~~~~~ 256 (331)
T 4e4r_A 177 DSQGLAEIAVESAKSALSFGMDPKVAMLSFSTKGSAKSDDVTKVQEAVKLAQQKAEEEKLEAIIDGEFQFDAAIVPGVAE 256 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCEEEEECSSSTTSSCSHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECHHHHHCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCeEEEEeCCCCCCCCCCCcHHHHHHHHHHHhhCcCCCCCeEEEccCcHHHHcCHHHHH
Confidence 55667788888999998765 34677765322221 1 11133444433333456 777654 5588875332
Q ss_pred ---hcCC--CCccEEEeCCCc-chhhhhhhhhccCCC
Q psy8787 244 ---VQDP--TQYDVLVMPNLY-GDILSDMCAGLVGGL 274 (364)
Q Consensus 244 ---v~~P--~~fdVivt~Nl~-GDIlSD~aa~l~G~l 274 (364)
..+| +++||+|+||+. |+|+--+..-+.|+.
T Consensus 257 ~k~~~s~vaG~advli~P~l~aGNi~~K~l~~~~~a~ 293 (331)
T 4e4r_A 257 KKAPGAKLQGDANVFVFPSLEAGNIGYKIAQRLGGYD 293 (331)
T ss_dssp HHSTTCSCSSCCCEEECSSHHHHHHHHHHHHHTTCCE
T ss_pred hhCCCCccCCcCCEEEeCChhHHHHHHHHHHHhcCCe
Confidence 2333 689999999997 999998887666553
No 84
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=39.86 E-value=80 Score=28.51 Aligned_cols=63 Identities=14% Similarity=0.110 Sum_probs=35.7
Q ss_pred CCCceEEEEeCcccccccHHHHHHHHHHhhcCCCeeEeeEe-----HH---HHHHHHhcCCCCccEEEeCCC
Q psy8787 195 NRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKY-----LD---TVCLNMVQDPTQYDVLVMPNL 258 (364)
Q Consensus 195 ~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp~i~~~~~~-----vD---~~~~~lv~~P~~fdVivt~Nl 258 (364)
|.++|.++.-..-.. +.....+-|++..+++|++++.... .+ .++.++++....+|.|+|.|=
T Consensus 127 G~~~I~~i~~~~~~~-~~~~R~~Gf~~al~~~pg~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~aI~~~nd 197 (325)
T 2x7x_A 127 GKGNIVELTGLSGST-PAMERHQGFMAAISKFPDIKLIDKADAAWERGPAEIEMDSMLRRHPKIDAVYAHND 197 (325)
T ss_dssp TEEEEEEEESCTTSH-HHHHHHHHHHHHHHTCTEEEEEEEEECTTSHHHHHHHHHHHHHHCSCCCEEEESST
T ss_pred CCceEEEEECCCCCc-cHHHHHHHHHHHHHhCCCCEEEeeecCCCCHHHHHHHHHHHHHhCCCCCEEEECCC
Confidence 667787775321111 1233445666666778888765322 11 234566655456899998874
No 85
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=38.41 E-value=1.2e+02 Score=26.08 Aligned_cols=74 Identities=9% Similarity=-0.062 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhhcCC----CeeE--eeEeHH---HHHHHHhcCCCCccEE
Q psy8787 183 VAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFP----EVKF--EEKYLD---TVCLNMVQDPTQYDVL 253 (364)
Q Consensus 183 iar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp----~i~~--~~~~vD---~~~~~lv~~P~~fdVi 253 (364)
.++.|.++..++|.++|.++.-..-.. ......+-|++..+++. ...+ .....+ ..+.++++....+|.|
T Consensus 107 ~~~~a~~~L~~~G~~~i~~i~~~~~~~-~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai 185 (275)
T 3d8u_A 107 VGKACTRHLIEQGFKNVGFIGARGNHS-TLQRQLHGWQSAMIENYLTPDHFLTTHEAPSSQLGAEGLAKLLLRDSSLNAL 185 (275)
T ss_dssp HHHHHHHHHHTTTCCCEEEEECSCSSH-HHHHHHHHHHHHHHHTTCCCCCEEECSSCCCHHHHHHHHHHHHTTCTTCCEE
T ss_pred HHHHHHHHHHHCCCCeEEEEcCCCCCc-hHHHHHHHHHHHHHHcCCCCCccEEEeCCCChhHHHHHHHHHHhCCCCCCEE
Confidence 344555555566778888775321111 11223344444333331 1111 111122 3456777776779999
Q ss_pred EeCC
Q psy8787 254 VMPN 257 (364)
Q Consensus 254 vt~N 257 (364)
+|.|
T Consensus 186 ~~~~ 189 (275)
T 3d8u_A 186 VCSH 189 (275)
T ss_dssp EESS
T ss_pred EEcC
Confidence 9976
No 86
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=37.77 E-value=51 Score=28.90 Aligned_cols=75 Identities=13% Similarity=0.035 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhCCCCceEEEEeCcc-cccccHHHHHHHHHHhhcCCCeeEeeE--eHH---HHHHHHhcCCCCccEEEe
Q psy8787 182 RVAEFAFEYAKTNNRSKVTAVHKANI-MRMSDGLFLRCCRDAAEKFPEVKFEEK--YLD---TVCLNMVQDPTQYDVLVM 255 (364)
Q Consensus 182 riar~Af~~A~~~~~~~Vt~v~KaNv-~~~~~~lf~~~~~~va~~yp~i~~~~~--~vD---~~~~~lv~~P~~fdVivt 255 (364)
...+.|.++..++|.+++.++.-..- .. +.....+-|++..+++|.+.+... .-+ ..+.++++...++|.|+|
T Consensus 109 ~~g~~a~~~L~~~G~~~I~~i~~~~~~~~-~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~ 187 (276)
T 3jy6_A 109 EAAKAATTAFRQQGYQHVVVLTSELELSR-TRQERYRGILAAAQDVDVLEVSESSYNHSEVHQRLTQLITQNDQKTVAFA 187 (276)
T ss_dssp HHHHHHHHHHHTTTCCEEEEEEECSTTCH-HHHHHHHHHHTTCSEEEEEEECSSSCCHHHHHHHHHHHHHSSSSCEEEEE
T ss_pred HHHHHHHHHHHHcCCCeEEEEecCCCCCc-hHHHHHHHHHHHHHhCCcEEEeccccCCcHHHHHHHHHHhcCCCCcEEEE
Confidence 34555666667778888887765432 21 224556667776677765433321 111 223444566678999999
Q ss_pred CC
Q psy8787 256 PN 257 (364)
Q Consensus 256 ~N 257 (364)
.|
T Consensus 188 ~~ 189 (276)
T 3jy6_A 188 LK 189 (276)
T ss_dssp SS
T ss_pred eC
Confidence 77
No 87
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=35.70 E-value=1.3e+02 Score=24.30 Aligned_cols=59 Identities=10% Similarity=0.180 Sum_probs=32.7
Q ss_pred CCCceEEEEeCcccccccHHHHHHHHHHhhcC---CCeeEeeEeHHHHHHHHhcCCCCccEEEeCCCcc
Q psy8787 195 NRSKVTAVHKANIMRMSDGLFLRCCRDAAEKF---PEVKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYG 260 (364)
Q Consensus 195 ~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~y---p~i~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~G 260 (364)
+..+|+.+|..- -..+.+++-.+.+ +.+++...-+......+...++.||+|++...|.
T Consensus 66 ~~~~v~~vD~~~-------~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~ 127 (187)
T 2fhp_A 66 GMDKSICIEKNF-------AALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYA 127 (187)
T ss_dssp TCSEEEEEESCH-------HHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCGG
T ss_pred CCCEEEEEECCH-------HHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEECCCCC
Confidence 446899998432 2333344333222 3465555444443333444578999999876664
No 88
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=35.60 E-value=1.3e+02 Score=26.36 Aligned_cols=60 Identities=17% Similarity=0.123 Sum_probs=33.8
Q ss_pred CCceEEEEe-CcccccccHHHHHHHHHHhhcCCCeeEeeEe-----HH---HHHHHHhcCCCCccEEEeCC
Q psy8787 196 RSKVTAVHK-ANIMRMSDGLFLRCCRDAAEKFPEVKFEEKY-----LD---TVCLNMVQDPTQYDVLVMPN 257 (364)
Q Consensus 196 ~~~Vt~v~K-aNv~~~~~~lf~~~~~~va~~yp~i~~~~~~-----vD---~~~~~lv~~P~~fdVivt~N 257 (364)
++++.++.- .+.. +.....+-+++..+++|++++.... .+ .++.+|++.+..+|.|+|.|
T Consensus 133 ~~~I~~i~g~~~~~--~~~~R~~Gf~~al~~~~g~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~n 201 (288)
T 1gud_A 133 GGEVAIIEGKAGNA--SGEARRNGATEAFKKASQIKLVASQPADWDRIKALDVATNVLQRNPNIKAIYCAN 201 (288)
T ss_dssp CEEEEEEECSTTCH--HHHHHHHHHHHHHHTCTTEEEEEEEECTTCHHHHHHHHHHHHHHCTTCCEEEESS
T ss_pred CCEEEEEeCCCCCc--hHhHHHHHHHHHHHhCCCcEEEEeecCCccHHHHHHHHHHHHHhCCCceEEEECC
Confidence 567777752 2221 1223344556655677777654322 12 24456666556799999987
No 89
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=34.88 E-value=1.5e+02 Score=25.81 Aligned_cols=60 Identities=18% Similarity=0.251 Sum_probs=34.2
Q ss_pred CCceEEEEe-CcccccccHHHHHHHHHHhhcCCCeeEeeEe-----HH---HHHHHHhcCCCCccEEEeCC
Q psy8787 196 RSKVTAVHK-ANIMRMSDGLFLRCCRDAAEKFPEVKFEEKY-----LD---TVCLNMVQDPTQYDVLVMPN 257 (364)
Q Consensus 196 ~~~Vt~v~K-aNv~~~~~~lf~~~~~~va~~yp~i~~~~~~-----vD---~~~~~lv~~P~~fdVivt~N 257 (364)
.+++.++.- .+.. +.....+-+++..+++|++++.... .+ ..+.+|++.+..+|.|+|.|
T Consensus 123 ~~~I~~i~g~~~~~--~~~~R~~Gf~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~n 191 (283)
T 2ioy_A 123 KGNVVELEGIPGAS--AARDRGKGFDEAIAKYPDIKIVAKQAADFDRSKGLSVMENILQAQPKIDAVFAQN 191 (283)
T ss_dssp CEEEEEEECCTTCH--HHHHHHHHHHHHHTTCTTEEEEEEEECTTCHHHHHHHHHHHHHHCSCCCEEEESS
T ss_pred CceEEEEECCCCCc--cHHHHHHHHHHHHHhCCCCEEEeeccCCCCHHHHHHHHHHHHHhCCCccEEEECC
Confidence 567877752 2221 1223345566666778887654321 22 23455666555789999998
No 90
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=34.66 E-value=56 Score=25.43 Aligned_cols=25 Identities=12% Similarity=0.182 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEeC
Q psy8787 180 SSRVAEFAFEYAKTNNRSKVTAVHKA 205 (364)
Q Consensus 180 ~eriar~Af~~A~~~~~~~Vt~v~Ka 205 (364)
+++.+++|.++|++.+ .+|+++|=.
T Consensus 16 s~~al~~a~~la~~~~-a~l~ll~v~ 40 (143)
T 3fdx_A 16 TERIISHVESEARIDD-AEVHFLTVI 40 (143)
T ss_dssp CTTHHHHHHHHHHHHT-CEEEEEEEE
T ss_pred HHHHHHHHHHHHHhcC-CeEEEEEEe
Confidence 6778899999998765 588888743
No 91
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=32.94 E-value=1.8e+02 Score=26.12 Aligned_cols=63 Identities=8% Similarity=0.231 Sum_probs=34.8
Q ss_pred CCCCceEEEEeCcccccccHHHHHHHHHHh-hcCCCeeEeeEe-----HH---HHHHHHhcCCCCccEEEeCC
Q psy8787 194 NNRSKVTAVHKANIMRMSDGLFLRCCRDAA-EKFPEVKFEEKY-----LD---TVCLNMVQDPTQYDVLVMPN 257 (364)
Q Consensus 194 ~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va-~~yp~i~~~~~~-----vD---~~~~~lv~~P~~fdVivt~N 257 (364)
+|++++.++.-..-.. ....|.+-+.+.. +.+|++++.... .+ ..+.+|++...++|.|+|.|
T Consensus 126 ~g~~~i~~i~g~~~~~-~~~~r~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~aI~~~n 197 (316)
T 1tjy_A 126 KEKAKVAFFYSSPTVT-DQNQWVKEAKAKISQEHPGWEIVTTQFGYNDATKSLQTAEGIIKAYPDLDAIIAPD 197 (316)
T ss_dssp SSSEEEEEEESCSSCH-HHHHHHHHHHHHHHHHCTTEEEEEEEECTTCHHHHHHHHHHHHHHCSSCCEEEECS
T ss_pred CCCCEEEEEEcCCCCh-hHHHHHHHHHHHHHhhCCCcEEEEeccCCCCHHHHHHHHHHHHHhCCCCCEEEECC
Confidence 4556787775221111 2245666666654 457887654431 22 23344555434699999988
No 92
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=31.98 E-value=1.8e+02 Score=25.87 Aligned_cols=62 Identities=10% Similarity=0.048 Sum_probs=34.0
Q ss_pred CCCceEEEEeCcccccccHHHHHHHHHHhhcCCCeeEeeEe-----HH---HHHHHHhcCCCCccEEEeCCC
Q psy8787 195 NRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKY-----LD---TVCLNMVQDPTQYDVLVMPNL 258 (364)
Q Consensus 195 ~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp~i~~~~~~-----vD---~~~~~lv~~P~~fdVivt~Nl 258 (364)
|.++|.++.-..-.. +.....+-|++..++ +++++.... .+ ..+.++++....+|.|+|.|=
T Consensus 122 G~~~I~~i~~~~~~~-~~~~R~~gf~~~l~~-~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d 191 (313)
T 2h3h_A 122 GKGKVVIGTGSLTAM-NSLQRIQGFKDAIKD-SEIEIVDILNDEEDGARAVSLAEAALNAHPDLDAFFGVYA 191 (313)
T ss_dssp SCSEEEEEESCSSCH-HHHHHHHHHHHHHTT-SSCEEEEEEECSSCHHHHHHHHHHHHHHCTTCCEEEECST
T ss_pred CCCEEEEEECCCCCc-cHHHHHHHHHHHhcC-CCCEEEEeecCCCCHHHHHHHHHHHHHHCcCceEEEEcCC
Confidence 667888776331111 123444556665555 666654322 11 334566665456899999873
No 93
>3cx5_E Cytochrome B-C1 complex subunit rieske, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: b.33.1.1 f.23.12.1 PDB: 1kb9_E* 1kyo_E* 1p84_E* 2ibz_E* 1ezv_E* 3cxh_E*
Probab=31.72 E-value=12 Score=32.57 Aligned_cols=24 Identities=33% Similarity=0.482 Sum_probs=19.9
Q ss_pred CCceeEeeccCCCCCccCCCCCCh
Q psy8787 284 LNGALFESVHGTAPDIAGKDLANP 307 (364)
Q Consensus 284 ~~~~~fEp~HGsapdiaGk~~aNP 307 (364)
+.+.+|.|.|||.-|+.|+-+..|
T Consensus 142 ~~~~~~CPcHGs~FD~~G~v~~gP 165 (185)
T 3cx5_E 142 DFGGWFCPCHGSHYDISGRIRKGP 165 (185)
T ss_dssp TTTEEEETTTTEEECTTCCEEESS
T ss_pred CCCEEEcCCCCCEECCCCCEecCC
Confidence 345899999999999999876666
No 94
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=31.20 E-value=92 Score=27.21 Aligned_cols=73 Identities=8% Similarity=-0.080 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhhcC----CCeeEeeEeH-------HHHHHHHhcCCCC--
Q psy8787 183 VAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKF----PEVKFEEKYL-------DTVCLNMVQDPTQ-- 249 (364)
Q Consensus 183 iar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~y----p~i~~~~~~v-------D~~~~~lv~~P~~-- 249 (364)
..+.|.++..++|.+++.++....-. ......+-|.+..+++ ....+....- -.++.++++....
T Consensus 124 ~~~~a~~~L~~~G~~~i~~i~~~~~~--~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 201 (298)
T 3tb6_A 124 GGMMAAEHLLSLGHTHMMGIFKADDT--QGVKRMNGFIQAHRERELFPSPDMIVTFTTEEKESKLLEKVKATLEKNSKHM 201 (298)
T ss_dssp HHHHHHHHHHHTTCCSEEEEEESSSH--HHHHHHHHHHHHHHHTTCCCCGGGEEEECHHHHTTHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHCCCCcEEEEcCCCCc--cHHHHHHHHHHHHHHcCCCCCcceEEEecccchhhhHHHHHHHHHhcCCCCC
Confidence 34455556666677888877643321 2223344444444433 1111211111 1234555554444
Q ss_pred ccEEEeCC
Q psy8787 250 YDVLVMPN 257 (364)
Q Consensus 250 fdVivt~N 257 (364)
+|.|+|.|
T Consensus 202 ~~ai~~~~ 209 (298)
T 3tb6_A 202 PTAILCYN 209 (298)
T ss_dssp CSEEECSS
T ss_pred CeEEEEeC
Confidence 99999987
No 95
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=30.86 E-value=1.6e+02 Score=25.66 Aligned_cols=74 Identities=12% Similarity=0.108 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhhcCC-C-----ee---EeeEeHHHHHHHHhcCCCCccEE
Q psy8787 183 VAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFP-E-----VK---FEEKYLDTVCLNMVQDPTQYDVL 253 (364)
Q Consensus 183 iar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp-~-----i~---~~~~~vD~~~~~lv~~P~~fdVi 253 (364)
..+.|.++..++|.++|.++.-..-.. +.....+-|++..+++. . +. ++..-.-.++.++++...++|.|
T Consensus 112 ~g~~a~~~L~~~G~~~i~~i~~~~~~~-~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai 190 (291)
T 3egc_A 112 GARTAVEYLIARGHTRIGAIVGSAGLM-TSRERLKGFRAAMSAAGLPVRQEWIAAGGVRADNGRDGAIKVLTGADRPTAL 190 (291)
T ss_dssp HHHHHHHHHHHTTCCSEEEECSCTTSH-HHHHHHHHHHHHHHHTTCCCCGGGEEC------CCHHHHHHHHTC-CCCSEE
T ss_pred HHHHHHHHHHHcCCCEEEEEeCCCCCc-CHHHHHHHHHHHHHHcCCCCCHHHeEeCCCChhHHHHHHHHHHhCCCCCcEE
Confidence 445555666666878888875432111 22344444555444431 1 11 11112224567777777789999
Q ss_pred EeCC
Q psy8787 254 VMPN 257 (364)
Q Consensus 254 vt~N 257 (364)
+|.|
T Consensus 191 ~~~~ 194 (291)
T 3egc_A 191 LTSS 194 (291)
T ss_dssp EESS
T ss_pred EECC
Confidence 9977
No 96
>3i3v_A Probable secreted solute-binding lipoprotein; transporter, PSI-II, structural genomics, protein structure initiative; 2.30A {Streptomyces coelicolor}
Probab=30.63 E-value=1.2e+02 Score=28.22 Aligned_cols=61 Identities=13% Similarity=0.098 Sum_probs=38.5
Q ss_pred CCceEEEEeCcccccccHHHHHHHHHHhhcCCCeeEeeEeHH----HHHHHHhcCCCCccEEEeC
Q psy8787 196 RSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLD----TVCLNMVQDPTQYDVLVMP 256 (364)
Q Consensus 196 ~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp~i~~~~~~vD----~~~~~lv~~P~~fdVivt~ 256 (364)
+..|++.+-..--......|.+++++..++||+|+++...+. .-....+..-...||+...
T Consensus 7 ~~tl~~~~~~~~~~~~~~~~~~~~~~f~~~~p~i~V~~~~~~~~~~~kl~~~~~sg~~pDv~~~~ 71 (405)
T 3i3v_A 7 PDTLVVHTQLGTTAPGSPTYLAAVDRFREENPGVKIKNLVNGDDLAQVYETSRLARKEADVVMVN 71 (405)
T ss_dssp CCSEEEEESCSSSSTTHHHHHHHHHHHHHHSTTCCEEEEECSTTHHHHHHHHHHTTCCCSEEEEC
T ss_pred CcEEEEEeecCCCchhhHHHHHHHHHHHHHCCCcEEEEEECcHHHHHHHHHHHHCCCCCcEEEec
Confidence 456777653211111246788999999899999988887652 2223334444568999884
No 97
>3quf_A Extracellular solute-binding protein, family 1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Bifidobacterium longum subsp}
Probab=30.14 E-value=1.1e+02 Score=28.41 Aligned_cols=47 Identities=9% Similarity=0.135 Sum_probs=34.4
Q ss_pred cHHHHHHHHHHhhcCCCeeEeeEeH---HHHHHHH---hcCCCCccEEEeCCC
Q psy8787 212 DGLFLRCCRDAAEKFPEVKFEEKYL---DTVCLNM---VQDPTQYDVLVMPNL 258 (364)
Q Consensus 212 ~~lf~~~~~~va~~yp~i~~~~~~v---D~~~~~l---v~~P~~fdVivt~Nl 258 (364)
+..+.++++++.++||+|+++...+ |....+| +..-..+||+...+-
T Consensus 40 ~~~~~~~~~~f~~~~p~i~V~~~~~~~~~~~~~kl~~~~~sg~~pDv~~~~~~ 92 (414)
T 3quf_A 40 DNQIGEVVKGFEKKNPDITLDVQYGQDPAQYISTLQTRLAGGKPPTIFNLTMD 92 (414)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHHHHSSSCCSEEEECTT
T ss_pred chHHHHHHHHHHHHCcCeEEEEEeCCChHHHHHHHHHHHhCCCCCCEEEECCc
Confidence 3578889999999999999998874 4444443 334468899987653
No 98
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=30.08 E-value=1.2e+02 Score=26.43 Aligned_cols=73 Identities=10% Similarity=-0.008 Sum_probs=35.4
Q ss_pred HHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhhcCC-Cee----Ee-eEeHH---HHHHHHhcCCCCccEEE
Q psy8787 184 AEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFP-EVK----FE-EKYLD---TVCLNMVQDPTQYDVLV 254 (364)
Q Consensus 184 ar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp-~i~----~~-~~~vD---~~~~~lv~~P~~fdViv 254 (364)
++.|.++..++|.++|.++.-..-.. ......+-|.+..+++. .+. +. ....+ ..+.++++....+|.|+
T Consensus 127 ~~~a~~~l~~~G~~~I~~i~~~~~~~-~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~ 205 (296)
T 3brq_A 127 SFNAVAELINAGHQEIAFLTGSMDSP-TSIERLAGYKDALAQHGIALNEKLIANGKWTPASGAEGVEMLLERGAKFSALV 205 (296)
T ss_dssp HHHHHHHHHHTTCCSEEEECCCTTCH-HHHHHHHHHHHHHHTTTCCCCGGGEECCCSSHHHHHHHHHHHHTC--CCSEEE
T ss_pred HHHHHHHHHHCCCceEEEEcCCCCCc-cHHHHHHHHHHHHHHcCCCCChhhEEeCCCChhHHHHHHHHHHhCCCCCCEEE
Confidence 44455555556778888775332111 11233344444444431 111 11 11122 34567777667799999
Q ss_pred eCC
Q psy8787 255 MPN 257 (364)
Q Consensus 255 t~N 257 (364)
|.|
T Consensus 206 ~~~ 208 (296)
T 3brq_A 206 ASN 208 (296)
T ss_dssp ESS
T ss_pred ECC
Confidence 987
No 99
>3qd7_X Uncharacterized protein YDAL; alpha/beta/alpha fold, endonuclease, hydrolase; 2.30A {Escherichia coli}
Probab=30.02 E-value=1.4e+02 Score=24.59 Aligned_cols=61 Identities=11% Similarity=0.079 Sum_probs=42.2
Q ss_pred EEEEEecHHHHHHHHHHHHHHHHhCCCCceEEEE-eCcccccccHHHHHHHHHHhhcCCCee
Q psy8787 170 QSIKLITEEASSRVAEFAFEYAKTNNRSKVTAVH-KANIMRMSDGLFLRCCRDAAEKFPEVK 230 (364)
Q Consensus 170 ~~~~~~t~~~~eriar~Af~~A~~~~~~~Vt~v~-KaNv~~~~~~lf~~~~~~va~~yp~i~ 230 (364)
.++.=+|.+++.+.....+.-|..+|.+.|.++| |.+-.+...+.-++.+.+.-+++|.|.
T Consensus 50 LDLHG~~~~EA~~~L~~fL~~a~~~g~r~V~IIHGKG~gs~~~~~vLk~~V~~wL~~~~~V~ 111 (137)
T 3qd7_X 50 LNLLRQPVEECRKMVFSFIQQALADGLRNVLIIHGKGRDDKSHANIVRSYVARWLTEFDDVQ 111 (137)
T ss_dssp EECTTCCHHHHHHHHHHHHHHHHHTTCSEEEEECCCCSSTTSHHHHHHHHHHHHHHTSTTEE
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCchHHHHHHHHHHHhcCCcee
Confidence 4554567788888888888999988888899999 554322112366666666666677664
No 100
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=29.80 E-value=2.2e+02 Score=24.64 Aligned_cols=72 Identities=14% Similarity=0.023 Sum_probs=36.8
Q ss_pred HHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhhcCCCeeEeeE----eHH---HHHHHHhcC-CCCccEEEe
Q psy8787 184 AEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEK----YLD---TVCLNMVQD-PTQYDVLVM 255 (364)
Q Consensus 184 ar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp~i~~~~~----~vD---~~~~~lv~~-P~~fdVivt 255 (364)
.+.|.++..++|.++|.++.-..-.. +.....+-+++..+++. ++++.. ..+ .++.++++. ...+|.|+|
T Consensus 106 ~~~a~~~L~~~G~~~i~~i~~~~~~~-~~~~R~~gf~~~l~~~g-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ai~~ 183 (277)
T 3cs3_A 106 ATQAIEQFVNVGSKKVLLLSGPEKGY-DSQERLAVSTRELTRFG-IPYEIIQGDFTEPSGYAAAKKILSQPQTEPVDVFA 183 (277)
T ss_dssp HHHHHHHHHHTTCSCEEEEECCTTSH-HHHHHHHHHHHHHHHTT-CCEEEEECCSSHHHHHHHHHHHTTSCCCSSEEEEE
T ss_pred HHHHHHHHHHcCCceEEEEeCCccCc-cHHHHHHHHHHHHHHcC-CCeeEEeCCCChhHHHHHHHHHHhcCCCCCcEEEE
Confidence 34444555556777887775331111 11233344444444442 322211 122 345667776 677999999
Q ss_pred CC
Q psy8787 256 PN 257 (364)
Q Consensus 256 ~N 257 (364)
.|
T Consensus 184 ~~ 185 (277)
T 3cs3_A 184 FN 185 (277)
T ss_dssp SS
T ss_pred cC
Confidence 77
No 101
>3k01_A Acarbose/maltose binding protein GACH; ABC transporter, acarbose-binding protein, transport protein; 1.35A {Streptomyces glaucescens} PDB: 3jzj_A* 3k00_A* 3k02_A*
Probab=29.75 E-value=62 Score=30.34 Aligned_cols=59 Identities=12% Similarity=0.113 Sum_probs=40.3
Q ss_pred CceEEEEeCcccccccHHHHHHHHHHhhcCCCeeEeeEeHH--HHHHHH---hcCCC-CccEEEeCC
Q psy8787 197 SKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLD--TVCLNM---VQDPT-QYDVLVMPN 257 (364)
Q Consensus 197 ~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp~i~~~~~~vD--~~~~~l---v~~P~-~fdVivt~N 257 (364)
.+|++-+-.+ ......+.++++++.++||+|+++...++ ....+| +.... .+||+.+.+
T Consensus 28 ~~l~~w~~~~--~~~~~~~~~~~~~f~~~~pgi~V~~~~~~~~~~~~kl~~~~~sg~~~pDv~~~~~ 92 (412)
T 3k01_A 28 GTVTFWDTSN--EAEKATYQALAEGFEKEHPKVDVKYVNVPFGEANAKFKNAAGGNSGAPDVMRTEV 92 (412)
T ss_dssp EEEEEEECCC--TTTHHHHHHHHHTHHHHCTTEEEEEEECCHHHHHHHHHHHHHTTSSCCSEEEEEH
T ss_pred cEEEEecCCC--CcchHHHHHHHHHHHHHCcCeEEEEEecChHHHHHHHHHHHhcCCCCCCEEEecC
Confidence 4688877655 22346888999999999999999988753 333333 33445 699988743
No 102
>2rbg_A Putative uncharacterized protein ST0493; hypothetical protein, structural genomics, unknown function, NPPSFA; 1.75A {Sulfolobus tokodaii}
Probab=28.76 E-value=2.3e+02 Score=22.87 Aligned_cols=67 Identities=12% Similarity=0.125 Sum_probs=46.2
Q ss_pred EecHHHHHHHHHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHH---HHhhcCCCeeEeeE-----eHHHHHHHHhc
Q psy8787 174 LITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCR---DAAEKFPEVKFEEK-----YLDTVCLNMVQ 245 (364)
Q Consensus 174 ~~t~~~~eriar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~---~va~~yp~i~~~~~-----~vD~~~~~lv~ 245 (364)
-.+.+....+.|..|.-+|..|-|||++ |+.. +--|++++. |.--+-=|+-++-. -||-|.-++.+
T Consensus 11 ~v~~E~l~n~fRk~fkD~R~~GskKvvi----Nvis--~~~y~e~v~~~REAiLDNIDlG~el~~WKp~eVdkm~~k~~q 84 (126)
T 2rbg_A 11 SVNNDNFENYFRKIFLDVRSSGSKKTTI----NVFT--EIQYQELVTLIREALLENIDIGYELFLWKKNEVDIFLKNLEK 84 (126)
T ss_dssp ECCGGGHHHHHHHHHHHHHHHTCSEEEE----EEEC--SSCHHHHHHHTHHHHHHTTTSEEEEEEECGGGHHHHHHHHTT
T ss_pred ecchhhHHHHHHHHHHHHHhcCCceEEE----EEec--CCcHHHHHHHHHHHHHhccccceEEEEeCHHHHHHHHHHHHH
Confidence 3456778999999999999999888886 7774 334555443 32223345544444 39999988887
Q ss_pred C
Q psy8787 246 D 246 (364)
Q Consensus 246 ~ 246 (364)
.
T Consensus 85 ~ 85 (126)
T 2rbg_A 85 S 85 (126)
T ss_dssp C
T ss_pred h
Confidence 6
No 103
>1vf5_D Rieske iron-sulfur protein; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.33.1.1 f.23.12.1 PDB: 2d2c_D* 2e74_D* 2e75_D* 2e76_D* 2zt9_D*
Probab=28.75 E-value=27 Score=29.96 Aligned_cols=51 Identities=16% Similarity=0.261 Sum_probs=34.4
Q ss_pred EEEeCCCcchh----hhhhhhhccCCCCcccccccCCCceeEeeccCCCCCccCCCCCCh
Q psy8787 252 VLVMPNLYGDI----LSDMCAGLVGGLGLTPSGNIGLNGALFESVHGTAPDIAGKDLANP 307 (364)
Q Consensus 252 Vivt~Nl~GDI----lSD~aa~l~G~lGl~psa~ig~~~~~fEp~HGsapdiaGk~~aNP 307 (364)
+++.-+..|.+ +++.|..+-..+..-+ .+..++.|.||+.-|..|+-+..|
T Consensus 89 ~~lv~~~~g~~~~~a~~~~CtH~G~~l~~~~-----~~~~~~CP~Hgs~Fd~~G~~~~gP 143 (179)
T 1vf5_D 89 TYIVVESKEAIRDYGINAVCTHLGCVVPWNA-----AENKFKCPCHGSQYDETGRVIRGP 143 (179)
T ss_dssp EECCBCTTCCBCSCCCBCBCTTTSCBCCBCS-----SSSSEECTTTCCEECSSSCCCSSS
T ss_pred EEEEEECCCcEEEEEEeCccCCCCCCCcccC-----CCCEEECCCCCCEECCCCcEecCC
Confidence 45555556664 5777777544433221 235789999999999999877777
No 104
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=28.03 E-value=2.7e+02 Score=24.56 Aligned_cols=73 Identities=11% Similarity=0.099 Sum_probs=38.0
Q ss_pred HHHHHHHHH-hCCCCceEEEEeCcccccccHHHHHHHHHHhhcC---CCeeEeeEe------HH---HHHHHHhcCC-CC
Q psy8787 184 AEFAFEYAK-TNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKF---PEVKFEEKY------LD---TVCLNMVQDP-TQ 249 (364)
Q Consensus 184 ar~Af~~A~-~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~y---p~i~~~~~~------vD---~~~~~lv~~P-~~ 249 (364)
.+.|.++.. +.|.+++.++.-..-.. +.....+-|++..+++ |++++.... .+ .++.++++.. ..
T Consensus 110 g~~a~~~L~~~~G~~~i~~i~g~~~~~-~~~~R~~Gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 188 (313)
T 3m9w_A 110 GELQAKALVDIVPQGNYFLMGGSPVDN-NAKLFRAGQMKVLKPYVDSGKIKVVGDQWVDGWLPENALKIMENALTANNNK 188 (313)
T ss_dssp HHHHHHHHHHHCSSEEEEEEESCTTCH-HHHHHHHHHHHHHHHHHHTTSEEEEEEEECGGGCHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhCCCCcEEEEECCCCCc-cHHHHHHHHHHHHHhhccCCCEEEEeeccCCCcCHHHHHHHHHHHHHhCCCC
Confidence 344444444 56777888775321111 1223344455544443 677764221 11 2345566543 78
Q ss_pred ccEEEeCC
Q psy8787 250 YDVLVMPN 257 (364)
Q Consensus 250 fdVivt~N 257 (364)
+|.|+|.|
T Consensus 189 ~~ai~~~~ 196 (313)
T 3m9w_A 189 IDAVVASN 196 (313)
T ss_dssp CCEEEESS
T ss_pred eeEEEECC
Confidence 99999987
No 105
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=27.80 E-value=1.4e+02 Score=26.06 Aligned_cols=73 Identities=10% Similarity=-0.074 Sum_probs=37.0
Q ss_pred HHHHHHHHHhC-C-CCceEEEEeCcccccccHHHHHHHHHHhhcCCCeeEeeEe----HH---HHHHHHhcCCCCccEEE
Q psy8787 184 AEFAFEYAKTN-N-RSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKY----LD---TVCLNMVQDPTQYDVLV 254 (364)
Q Consensus 184 ar~Af~~A~~~-~-~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp~i~~~~~~----vD---~~~~~lv~~P~~fdViv 254 (364)
.+.|.++..++ | .++|.++.-..-.. ......+-+++..++++....+... .+ .++.++++....+|.|+
T Consensus 117 g~~~~~~L~~~~G~~~~i~~i~~~~~~~-~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~ 195 (289)
T 3brs_A 117 GIRIGAVTKNLVRKSGKIGVISFVKNSK-TAMDREEGLKIGLSDDSNKIEAIYYCDSNYDKAYDGTVELLTKYPDISVMV 195 (289)
T ss_dssp HHHHHHHHHHHTSSSCEEEEEESCTTSH-HHHHHHHHHHHHHGGGGGGEEEEEECTTCHHHHHHHHHHHHHHCTTEEEEE
T ss_pred HHHHHHHHHHHcCCCceEEEEECCCCCc-cHHHHHHHHHHHHHhCCCcEEeeecCCCCHHHHHHHHHHHHHhCCCceEEE
Confidence 33444444443 4 67888775321111 1233445566655666542111111 22 23456666555789999
Q ss_pred eCC
Q psy8787 255 MPN 257 (364)
Q Consensus 255 t~N 257 (364)
|.|
T Consensus 196 ~~~ 198 (289)
T 3brs_A 196 GLN 198 (289)
T ss_dssp ESS
T ss_pred ECC
Confidence 987
No 106
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=27.62 E-value=2.5e+02 Score=24.24 Aligned_cols=74 Identities=8% Similarity=-0.063 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhhcC-CCe-----eEeeEe---HHHHHHHHhcCCCCccEE
Q psy8787 183 VAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKF-PEV-----KFEEKY---LDTVCLNMVQDPTQYDVL 253 (364)
Q Consensus 183 iar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~y-p~i-----~~~~~~---vD~~~~~lv~~P~~fdVi 253 (364)
..+.|.++..++|.+++.++.-..-.. +.....+-|.+..+++ ..+ ...... .-..+.++++....+|.|
T Consensus 118 ~g~~a~~~L~~~G~~~i~~i~~~~~~~-~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai 196 (292)
T 3k4h_A 118 AAREVAEYLISLGHKQIAFIGGGSDLL-VTRDRLAGMSDALKLADIVLPKEYILHFDFSRESGQQAVEELMGLQQPPTAI 196 (292)
T ss_dssp HHHHHHHHHHHTTCCCEEEEESCTTBH-HHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHTSSSCCSEE
T ss_pred HHHHHHHHHHHCCCceEEEEeCcccch-hHHHHHHHHHHHHHHcCCCCChheEEecCCCHHHHHHHHHHHHcCCCCCcEE
Confidence 344555555566778888876332221 1123334444443333 111 111111 223456777777789999
Q ss_pred EeCC
Q psy8787 254 VMPN 257 (364)
Q Consensus 254 vt~N 257 (364)
+|.|
T Consensus 197 ~~~~ 200 (292)
T 3k4h_A 197 MATD 200 (292)
T ss_dssp EESS
T ss_pred EEcC
Confidence 9987
No 107
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=26.72 E-value=1.2e+02 Score=26.52 Aligned_cols=73 Identities=10% Similarity=0.086 Sum_probs=36.4
Q ss_pred HHHHHHHHHHh-CCCC-ceEEEEe-CcccccccHHHHHHHHHHhh-cCCCeeEeeEe------HH---HHHHHHhcCCCC
Q psy8787 183 VAEFAFEYAKT-NNRS-KVTAVHK-ANIMRMSDGLFLRCCRDAAE-KFPEVKFEEKY------LD---TVCLNMVQDPTQ 249 (364)
Q Consensus 183 iar~Af~~A~~-~~~~-~Vt~v~K-aNv~~~~~~lf~~~~~~va~-~yp~i~~~~~~------vD---~~~~~lv~~P~~ 249 (364)
..+.|.++..+ .|.+ ++.++.- .+.. ....+.+-|++..+ .+|++++.... .+ ..+.++++....
T Consensus 112 ~g~~a~~~l~~~~g~~~~i~~i~g~~~~~--~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 189 (303)
T 3d02_A 112 FAAEYVEHMAKRMGGKGGYVIYVGSLTVP--QHNLWADLLVKYQKEHYPDMHEVTRRMPVAESVDDSRRTTLDLMKTYPD 189 (303)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEECSCSSCH--HHHHHHHHHHHHHHHHCTTEEESSSCBSCTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhCcCceEEEEecCCCCc--cHHHHHHHHHHHHHhhCCCCEEEEeecCCCCCHHHHHHHHHHHHHhCCC
Confidence 34445555544 5555 7766642 2221 11233444555433 46776553211 12 234455554446
Q ss_pred ccEEEeCC
Q psy8787 250 YDVLVMPN 257 (364)
Q Consensus 250 fdVivt~N 257 (364)
+|.|++.|
T Consensus 190 ~~ai~~~~ 197 (303)
T 3d02_A 190 LKAVVSFG 197 (303)
T ss_dssp EEEEEESS
T ss_pred CCEEEEeC
Confidence 99999987
No 108
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=26.66 E-value=2.3e+02 Score=24.60 Aligned_cols=75 Identities=11% Similarity=-0.048 Sum_probs=36.6
Q ss_pred HHHHHHHHhCCC--CceEEEEeC---cccccccHHHHHHHHHHhhc-CCCeeEeeEe--------HHHHHHHHhcCCCCc
Q psy8787 185 EFAFEYAKTNNR--SKVTAVHKA---NIMRMSDGLFLRCCRDAAEK-FPEVKFEEKY--------LDTVCLNMVQDPTQY 250 (364)
Q Consensus 185 r~Af~~A~~~~~--~~Vt~v~Ka---Nv~~~~~~lf~~~~~~va~~-yp~i~~~~~~--------vD~~~~~lv~~P~~f 250 (364)
+.|.++..++|. ++|.++.-. ..-..+.....+-|++..++ .++++..... .-.++.++++...++
T Consensus 122 ~~a~~~l~~~g~~~~~i~~i~~~~~g~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 201 (304)
T 3gbv_A 122 YFAARMLMLLAVNDREIVIFRKIHEGVIGSNQQESREIGFRQYMQEHHPACNILELNLHADLNIEDSRMLDDFFREHPDV 201 (304)
T ss_dssp HHHHHHHHHHSTTCSEEEEEEEEBTTBCCCHHHHHHHHHHHHHHHHHCTTSEEEEEEEESSCSSCHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCCeEEEEEecccCCccchhHHHHHHHHHHHHHhhCCCcEEEEeeecCCCHHHHHHHHHHHHHhCCCe
Confidence 334444444444 788777521 00001122333444443333 3554433321 224556666655679
Q ss_pred cEEEeCCCc
Q psy8787 251 DVLVMPNLY 259 (364)
Q Consensus 251 dVivt~Nl~ 259 (364)
|.|+|.|=.
T Consensus 202 ~ai~~~~d~ 210 (304)
T 3gbv_A 202 KHGITFNSK 210 (304)
T ss_dssp CEEEESSSC
T ss_pred EEEEEcCcc
Confidence 999999843
No 109
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=26.56 E-value=1.7e+02 Score=25.48 Aligned_cols=73 Identities=3% Similarity=0.008 Sum_probs=35.5
Q ss_pred HHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhhcCC-C--eeEeeEe---HHHHHHH--HhcCCCCccEEEe
Q psy8787 184 AEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFP-E--VKFEEKY---LDTVCLN--MVQDPTQYDVLVM 255 (364)
Q Consensus 184 ar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp-~--i~~~~~~---vD~~~~~--lv~~P~~fdVivt 255 (364)
.+.|.++..++|.++|.++.-..-.. +.....+-|++..+++. . +...... .-.++.+ +++....+|.|+|
T Consensus 112 g~~a~~~L~~~G~~~I~~i~~~~~~~-~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~ 190 (285)
T 3c3k_A 112 SEYVVDQLVKSGKKRIALINHDLAYQ-YAQHRESGYLNRLKFHGLDYSRISYAENLDYMAGKLATFSLLKSAVKPDAIFA 190 (285)
T ss_dssp HHHHHHHHHHTTCCCEEEEECCTTSH-HHHHHHHHHHHHHHHHTCCCCEEEECSSSSHHHHHHHHHHHHSSSSCCSEEEE
T ss_pred HHHHHHHHHHcCCCeEEEEeCCCccc-cHHHHHHHHHHHHHHcCCCceEeecCCChHHHHHHHHHHHHHcCCCCCeEEEE
Confidence 34455555555778888776432111 11222333333333221 1 1111111 1234556 7777667999999
Q ss_pred CC
Q psy8787 256 PN 257 (364)
Q Consensus 256 ~N 257 (364)
.|
T Consensus 191 ~~ 192 (285)
T 3c3k_A 191 IS 192 (285)
T ss_dssp SS
T ss_pred CC
Confidence 87
No 110
>3cfx_A UPF0100 protein MA_0280; ABC transporter, binding protein, molybdate, tungstate, LIGA unknown function, transport protein; 1.60A {Methanosarcina acetivorans}
Probab=26.54 E-value=1.3e+02 Score=27.02 Aligned_cols=46 Identities=13% Similarity=0.104 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhhcCCCeeEeeEe--HHHHHHHHhcCCCCccEEEeCCC
Q psy8787 213 GLFLRCCRDAAEKFPEVKFEEKY--LDTVCLNMVQDPTQYDVLVMPNL 258 (364)
Q Consensus 213 ~lf~~~~~~va~~yp~i~~~~~~--vD~~~~~lv~~P~~fdVivt~Nl 258 (364)
..+.++.+++.++||+|+++..+ -..+..++...-..+||+++.+.
T Consensus 17 ~~~~~l~~~F~~~~~gi~V~~~~~~s~~l~~~i~~~g~~~Dv~~~a~~ 64 (296)
T 3cfx_A 17 VPFEELEAEFEAQHPGVDVQREAAGSAQSVRKITELGKKADVLASADY 64 (296)
T ss_dssp HHHHHHHHHHHHHSTTCEEEEEECCHHHHHHHHHTSCCCCSEEEESST
T ss_pred HHHHHHHHHHHHHCCCceEEEEeCchHHHHHHHHhCCCCCcEEEECCh
Confidence 46778888887889998887765 44566677652346999998765
No 111
>1pp9_E Ubiquinol-cytochrome C reductase iron-sulfur SUBU mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: b.33.1.1 f.23.12.1 PDB: 1bgy_E* 1be3_E* 1l0n_E* 1ntk_E* 1ntm_E* 1ntz_E* 1nu1_E* 1l0l_E* 1ppj_E* 1qcr_E* 1sqb_E* 1sqp_E* 1sqq_E* 1sqv_E* 1sqx_E* 2a06_E* 2fyu_E* 2ybb_E* 1bcc_E* 2bcc_E* ...
Probab=26.45 E-value=18 Score=31.83 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=20.1
Q ss_pred CCCceeEeeccCCCCCccCCCCCCh
Q psy8787 283 GLNGALFESVHGTAPDIAGKDLANP 307 (364)
Q Consensus 283 g~~~~~fEp~HGsapdiaGk~~aNP 307 (364)
++.+.++.|.||+.-|+.|+-+..|
T Consensus 151 ~~~~~~~CP~HGs~FD~~G~v~~gP 175 (196)
T 1pp9_E 151 GDFGGYYCPCHGSHYDASGRIRKGP 175 (196)
T ss_dssp STTSSEEETTTTEEECTTCCEEESS
T ss_pred CCCCEEEeCCCCCEECCCCCCccCC
Confidence 3445899999999999999876655
No 112
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=26.22 E-value=3.1e+02 Score=23.81 Aligned_cols=73 Identities=16% Similarity=0.030 Sum_probs=39.3
Q ss_pred HHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhhcCC-CeeEee---EeHH---HHHHHHhcCCCCccEEEeC
Q psy8787 184 AEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFP-EVKFEE---KYLD---TVCLNMVQDPTQYDVLVMP 256 (364)
Q Consensus 184 ar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp-~i~~~~---~~vD---~~~~~lv~~P~~fdVivt~ 256 (364)
++.|.++-.++|.++|.++.-..-.. +.....+-|++..++++ +..+.. ...+ .++.++++....+|.|+|.
T Consensus 126 ~~~a~~~L~~~G~~~I~~i~~~~~~~-~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~ 204 (293)
T 2iks_A 126 AEMLAEELRKFPAETVLYLGALPELS-VSFLREQGFRTAWKDDPREVHFLYANSYEREAAAQLFEKWLETHPMPQALFTT 204 (293)
T ss_dssp HHHHHHHHHTSCCSSEEEEEECTTSH-HHHHHHHHHHHHHTTCCCCEEEEEESSSCHHHHHHHHHHHTTTSCCCSEEEES
T ss_pred HHHHHHHHHHCCCCEEEEEecCcccc-cHHHHHHHHHHHHHHcCCCccEEEcCCCChhhHHHHHHHHHhcCCCCCEEEEC
Confidence 34455555566778887775321111 12344455666555554 222111 1112 3456777776779999998
Q ss_pred C
Q psy8787 257 N 257 (364)
Q Consensus 257 N 257 (364)
|
T Consensus 205 ~ 205 (293)
T 2iks_A 205 S 205 (293)
T ss_dssp S
T ss_pred C
Confidence 7
No 113
>3bvr_A NOTI restriction endonuclease; protein-DNA complex; HET: DNA; 2.50A {Nocardia otitidiscaviarum} PDB: 3bvq_A* 3c25_A*
Probab=25.24 E-value=13 Score=35.06 Aligned_cols=29 Identities=34% Similarity=0.411 Sum_probs=24.2
Q ss_pred hcCCCCccEEEeCCCc--chhhhhhhhhccC
Q psy8787 244 VQDPTQYDVLVMPNLY--GDILSDMCAGLVG 272 (364)
Q Consensus 244 v~~P~~fdVivt~Nl~--GDIlSD~aa~l~G 272 (364)
+++++.||||+|||-+ +.||+|.+.-+.|
T Consensus 70 ~~d~ePydvIiCPiRL~dy~il~~~s~~~Fg 100 (383)
T 3bvr_A 70 AVDNERYDWLVCPNRALDPLFMSAASRKLFG 100 (383)
T ss_dssp EETTEEEEEECCGGGGCCHHHHHHHHHHHHT
T ss_pred cCCCCCceEEEcccccccHHHHHHHHHHhcC
Confidence 3677889999999986 6788898888777
No 114
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=24.93 E-value=2.9e+02 Score=24.18 Aligned_cols=72 Identities=7% Similarity=-0.088 Sum_probs=37.7
Q ss_pred HHHHHHHHHhCC--CCceEEEEeCcccccccHHHHHHHHHHhhcCCCeeEeeEe-------HHHHHHHHhcCCCCccEEE
Q psy8787 184 AEFAFEYAKTNN--RSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKY-------LDTVCLNMVQDPTQYDVLV 254 (364)
Q Consensus 184 ar~Af~~A~~~~--~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp~i~~~~~~-------vD~~~~~lv~~P~~fdViv 254 (364)
.+.|.++..+++ .+++.++.-..-.. +.....+-|++..+++ ++++.... .-.++.++++...+.|.|+
T Consensus 116 g~~a~~~l~~~g~~~~~i~~i~g~~~~~-~~~~R~~Gf~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~ 193 (297)
T 3rot_A 116 GKKLGEKALELTPSAKRALVLNPQPGHI-GLEKRAYGIKTILQDK-GIFFEELDVGTDPNQVQSRVKSYFKIHPETNIIF 193 (297)
T ss_dssp HHHHHHHHHHHCTTCCEEEEEESCTTCH-HHHHHHHHHHHHHHHT-TCEEEEEECCSCHHHHHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHHHHHHhcCCCceEEEEeCCCCcH-HHHHHHHHHHHHHHhc-CCeEEEeecCCChHHHHHHHHHHHHhCCCCCEEE
Confidence 334444444445 67787775322111 2234445566555555 55544332 1233455555555789999
Q ss_pred eCC
Q psy8787 255 MPN 257 (364)
Q Consensus 255 t~N 257 (364)
|.|
T Consensus 194 ~~~ 196 (297)
T 3rot_A 194 CLT 196 (297)
T ss_dssp ESS
T ss_pred EcC
Confidence 988
No 115
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=24.81 E-value=1.6e+02 Score=25.72 Aligned_cols=73 Identities=11% Similarity=0.024 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhhcCCCeeEeeE----------eHHHHHHHHhcCCCCccE
Q psy8787 183 VAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEK----------YLDTVCLNMVQDPTQYDV 252 (364)
Q Consensus 183 iar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp~i~~~~~----------~vD~~~~~lv~~P~~fdV 252 (364)
..+.|.++-.++|.+++.++.-..-.. +.....+-+++..+++. +.++.. ..-.++.++++....+|.
T Consensus 114 ~g~~a~~~L~~~G~~~I~~i~~~~~~~-~~~~R~~gf~~~l~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a 191 (288)
T 3gv0_A 114 YAYEAVERLAQCGRKRIAVIVPPSRFS-FHDHARKGFNRGIRDFG-LTEFPIDAVTIETPLEKIRDFGQRLMQSSDRPDG 191 (288)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCCTTSH-HHHHHHHHHHHHHHHTT-CEECCCCSCCTTSCHHHHHHHHHHHTTSSSCCSE
T ss_pred HHHHHHHHHHHCCCCeEEEEcCCcccc-hHHHHHHHHHHHHHHcC-CCcchhheeccccchHHHHHHHHHHHhCCCCCcE
Confidence 445566666667888888875322111 11233344444444432 221111 112456777777778999
Q ss_pred EEeCC
Q psy8787 253 LVMPN 257 (364)
Q Consensus 253 ivt~N 257 (364)
|+|.|
T Consensus 192 i~~~~ 196 (288)
T 3gv0_A 192 IVSIS 196 (288)
T ss_dssp EEESC
T ss_pred EEEcC
Confidence 99988
No 116
>3c9h_A ABC transporter, substrate binding protein; structural genom MCSG, PSI-2, protein structure initiative; HET: CIT; 1.90A {Agrobacterium tumefaciens str}
Probab=24.43 E-value=78 Score=29.07 Aligned_cols=56 Identities=7% Similarity=0.069 Sum_probs=36.4
Q ss_pred CceEEEEeCcccccccHHHHHHHHHHhhcCCCeeEeeEeHH--HHHHHHhcC----CCCccEEEeCC
Q psy8787 197 SKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLD--TVCLNMVQD----PTQYDVLVMPN 257 (364)
Q Consensus 197 ~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp~i~~~~~~vD--~~~~~lv~~----P~~fdVivt~N 257 (364)
..|++.+-. ....+.++++++.++||+|+++....+ ....+|... -..+||+...+
T Consensus 34 ~~L~v~~~~-----~~~~~~~~~~~Fe~~~Pgi~V~~~~~~~~~~~~kl~~~~~ag~~~~DV~~~~~ 95 (355)
T 3c9h_A 34 QTLVVYSSL-----DEPLATPMIEGFQKANPDIAVHYEDMLTGEIYDRIVKETDAGKKTADFAFSSA 95 (355)
T ss_dssp CEEEEEECS-----CHHHHHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHHHHTTCCBCSEEEESC
T ss_pred CEEEEEeCC-----CHHHHHHHHHHHHHHCcCeEEEEEeCChHHHHHHHHHHHhcCCCCCCEEEecc
Confidence 457765422 224678888888888999888877753 344555432 24689888765
No 117
>2nwf_A Ubiquinol-cytochrome C reductase iron-sulfur SUBU; rieske [2Fe-2S] ISP, oxidoreductase; HET: GOL; 1.10A {Rhodobacter sphaeroides} PDB: 2nuk_A 2nve_A 2num_A 2nvg_A 2nvf_A
Probab=24.33 E-value=20 Score=29.85 Aligned_cols=25 Identities=36% Similarity=0.465 Sum_probs=19.8
Q ss_pred CCCceeEeeccCCCCCccCCCCCCh
Q psy8787 283 GLNGALFESVHGTAPDIAGKDLANP 307 (364)
Q Consensus 283 g~~~~~fEp~HGsapdiaGk~~aNP 307 (364)
++...++.|.||+.-|+.|+-+..|
T Consensus 96 ~~~~~~~CP~Hgs~Fd~~G~~~~gP 120 (141)
T 2nwf_A 96 GDFGGWFCPCHGSHWDSAGRIRKGP 120 (141)
T ss_dssp TTTTEEEETTTTEEECTTSCEEESS
T ss_pred cCCCEEEcCCCCCEECCCCCCccCC
Confidence 3446899999999999999866555
No 118
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=24.30 E-value=1.8e+02 Score=25.50 Aligned_cols=73 Identities=11% Similarity=-0.004 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhhcCC-C----eeEeeEeHH---HHHHHHhcCCCCccEEE
Q psy8787 183 VAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFP-E----VKFEEKYLD---TVCLNMVQDPTQYDVLV 254 (364)
Q Consensus 183 iar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp-~----i~~~~~~vD---~~~~~lv~~P~~fdViv 254 (364)
.++.|.++-.++|.+++.++.-..-. +.....+-|++..+++. . +.......+ .++.++++...++|.|+
T Consensus 113 ~~~~a~~~L~~~G~~~I~~i~~~~~~--~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~ 190 (289)
T 3k9c_A 113 GITLAVDHLTELGHRNIAHIDGADAP--GGADRRAGFLAAMDRHGLSASATVVTGGTTETEGAEGMHTLLEMPTPPTAVV 190 (289)
T ss_dssp HHHHHHHHHHHTTCCSEEEECCTTST--THHHHHHHHHHHHHHTTCGGGEEEECCCSSHHHHHHHHHHHHTSSSCCSEEE
T ss_pred HHHHHHHHHHHCCCCcEEEEeCCCCc--cHHHHHHHHHHHHHHCCCCCCccEEECCCCHHHHHHHHHHHHcCCCCCCEEE
Confidence 34555566666788888888643322 23344455555444432 1 111111122 34567777777899999
Q ss_pred eCC
Q psy8787 255 MPN 257 (364)
Q Consensus 255 t~N 257 (364)
|.|
T Consensus 191 ~~~ 193 (289)
T 3k9c_A 191 AFN 193 (289)
T ss_dssp ESS
T ss_pred ECC
Confidence 987
No 119
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=24.05 E-value=2.6e+02 Score=24.92 Aligned_cols=26 Identities=23% Similarity=0.210 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHhCCCCceEEEEe
Q psy8787 178 EASSRVAEFAFEYAKTNNRSKVTAVHK 204 (364)
Q Consensus 178 ~~~eriar~Af~~A~~~~~~~Vt~v~K 204 (364)
..+++.+++|.++|++.+ .+|+++|=
T Consensus 30 ~~s~~al~~A~~lA~~~~-a~l~ll~v 55 (309)
T 3cis_A 30 PAAQVAVRWAARDAELRK-IPLTLVHA 55 (309)
T ss_dssp HHHHHHHHHHHHHHHHHT-CCEEEEEE
T ss_pred HHHHHHHHHHHHHHHhcC-CcEEEEEE
Confidence 457889999999998876 57888873
No 120
>3uor_A ABC transporter sugar binding protein; ALFA/beta protein, periplasmic-binding protein, maltose, SUG binding protein; 2.20A {Xanthomonas axonopodis PV}
Probab=23.71 E-value=1.2e+02 Score=28.97 Aligned_cols=59 Identities=10% Similarity=0.105 Sum_probs=38.1
Q ss_pred CCceEEEEeCcccccccHHHHHHHHHHhhcCCCeeEeeEeHH--HHHHHH---hcCCCCccEEEeCCC
Q psy8787 196 RSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLD--TVCLNM---VQDPTQYDVLVMPNL 258 (364)
Q Consensus 196 ~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp~i~~~~~~vD--~~~~~l---v~~P~~fdVivt~Nl 258 (364)
...||+-+-.+ ....+.++++++.++||+|+++...++ ....+| +..-..+||+...+.
T Consensus 29 ~~tlt~w~~~~----~~~~~~~~~~~F~~~~pgi~V~~~~~~~~~~~~kl~~~~~sg~~pDv~~~~~~ 92 (458)
T 3uor_A 29 KTTVRFWAMGK----EAEVVAELVADFEKQNPTIHVDVQNIPMTAAHEKLLTAFAADGLPDVCQLGNT 92 (458)
T ss_dssp CEEEEEEECTH----HHHHHHHHHHHHHTTCTTEEEEEEECCHHHHHHHHHHHHHTTCCCSEEEEETT
T ss_pred CeEEEEEecCC----cHHHHHHHHHHHHHHCCCcEEEEEEcChHHHHHHHHHHHhCCCCCCEEEECcH
Confidence 34566654322 235788889999999999999888753 222222 233457998887653
No 121
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=23.45 E-value=2.7e+02 Score=23.98 Aligned_cols=73 Identities=10% Similarity=-0.010 Sum_probs=34.7
Q ss_pred HHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhhcCC-Cee---Ee--eEe---HHHHHHHHhcCCCCccEEE
Q psy8787 184 AEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFP-EVK---FE--EKY---LDTVCLNMVQDPTQYDVLV 254 (364)
Q Consensus 184 ar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp-~i~---~~--~~~---vD~~~~~lv~~P~~fdViv 254 (364)
++.|.++..++|.++|.++.-..-.. ......+-+++..+++. ++. +. ... .-..+.++++.+..+|.|+
T Consensus 114 ~~~~~~~L~~~G~~~i~~i~~~~~~~-~~~~R~~g~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~ 192 (289)
T 1dbq_A 114 GYMAGRYLIERGHREIGVIPGPLERN-TGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVF 192 (289)
T ss_dssp HHHHHHHHHHTTCCSEEEECCC-------CHHHHHHHHHHHHTTCCCCGGGBCCCCSSHHHHHHHHHHHHTSSSCCSEEE
T ss_pred HHHHHHHHHHCCCCeEEEEecCCccc-cHHHHHHHHHHHHHHCCCCCChHHeEeCCCCHHHHHHHHHHHHhCCCCCCEEE
Confidence 34445555555778888774221111 11223333444333331 111 10 111 1234567777767899999
Q ss_pred eCC
Q psy8787 255 MPN 257 (364)
Q Consensus 255 t~N 257 (364)
|.|
T Consensus 193 ~~~ 195 (289)
T 1dbq_A 193 CGG 195 (289)
T ss_dssp ESC
T ss_pred ECC
Confidence 987
No 122
>3cfz_A UPF0100 protein MJ1186; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.70A {Methanocaldococcus jannaschii}
Probab=23.29 E-value=1.7e+02 Score=26.01 Aligned_cols=46 Identities=13% Similarity=0.127 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhhcCCCeeEeeEe--HHHHHHHHhcCCCCccEEEeCCC
Q psy8787 213 GLFLRCCRDAAEKFPEVKFEEKY--LDTVCLNMVQDPTQYDVLVMPNL 258 (364)
Q Consensus 213 ~lf~~~~~~va~~yp~i~~~~~~--vD~~~~~lv~~P~~fdVivt~Nl 258 (364)
..+.++.+++.++||+|+++..+ -..+..++...-..+||+++.+.
T Consensus 17 ~~~~~l~~~F~~~~~gi~V~~~~~~s~~l~~~i~~~g~~~Dv~~~a~~ 64 (292)
T 3cfz_A 17 VPFEEYEKMFEKEHPNVDVEREPAGSVACVRKIIDLGKKADILASADY 64 (292)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEEECHHHHHHHHHTSCCCCSEEEESST
T ss_pred HHHHHHHHHHHHHCCCceEEEEeCCHHHHHHHHHhcCCCCcEEEECCh
Confidence 46777777777889998887765 44456667652346999998765
No 123
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=23.16 E-value=2.2e+02 Score=24.97 Aligned_cols=74 Identities=5% Similarity=-0.048 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhhcCC----C--eeEeeEeHH---HHHHHHhcCCCCccEE
Q psy8787 183 VAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFP----E--VKFEEKYLD---TVCLNMVQDPTQYDVL 253 (364)
Q Consensus 183 iar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp----~--i~~~~~~vD---~~~~~lv~~P~~fdVi 253 (364)
.++.|.++-.++|.+++.++.-..-.. +.....+-|++..+++. . +.......+ .++.++++...++|.|
T Consensus 113 ~~~~a~~~L~~~G~~~I~~i~~~~~~~-~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai 191 (294)
T 3qk7_A 113 GASLAVKRLLELGHQRIAFVSTDARIS-YVDQRLQGYVQTMSEAGLMPLAGYLQKADPTRPGGYLAASRLLALEVPPTAI 191 (294)
T ss_dssp HHHHHHHHHHHTTCCCEEEEEESSCCH-HHHHHHHHHHHHHHTTTCCCCTTCEEEECSSHHHHHHHHHHHHHSSSCCSEE
T ss_pred HHHHHHHHHHHCCCceEEEEeCCcccc-hHHHHHHHHHHHHHHCCCCCChhHeecCCCCHHHHHHHHHHHHcCCCCCcEE
Confidence 344555565666878888775432211 11233344444433331 1 111111222 3567777777789999
Q ss_pred EeCC
Q psy8787 254 VMPN 257 (364)
Q Consensus 254 vt~N 257 (364)
+|.|
T Consensus 192 ~~~n 195 (294)
T 3qk7_A 192 ITDC 195 (294)
T ss_dssp EESS
T ss_pred EECC
Confidence 9987
No 124
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=23.09 E-value=1.7e+02 Score=25.69 Aligned_cols=74 Identities=11% Similarity=0.056 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhhcCC-Ce----eEe-eEeHH---HHHHHHhcCCCCccEE
Q psy8787 183 VAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFP-EV----KFE-EKYLD---TVCLNMVQDPTQYDVL 253 (364)
Q Consensus 183 iar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp-~i----~~~-~~~vD---~~~~~lv~~P~~fdVi 253 (364)
.++.|.++..++|.+++.++.-..-.. ......+-+++..+++. .+ .+. ....+ .++.++++....+|.|
T Consensus 115 ~g~~a~~~L~~~G~~~I~~i~~~~~~~-~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai 193 (290)
T 2rgy_A 115 GGELAAATLIEHGHRKLAVISGPFTAS-DNVERLDGFFDELARHGIARDSVPLIESDFSPEGGYAATCQLLESKAPFTGL 193 (290)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESCTTCH-HHHHHHHHHHHHHHTTTCCGGGSCEEECCSSHHHHHHHHHHHHHHTCCCSEE
T ss_pred HHHHHHHHHHHCCCceEEEEeCCCCCc-cHHHHHHHHHHHHHHcCCCCCcccEEecCCChhHHHHHHHHHHhCCCCCcEE
Confidence 344455555556778888775331111 11233344444444432 11 111 11112 3445667666678999
Q ss_pred EeCC
Q psy8787 254 VMPN 257 (364)
Q Consensus 254 vt~N 257 (364)
+|.|
T Consensus 194 ~~~~ 197 (290)
T 2rgy_A 194 FCAN 197 (290)
T ss_dssp EESS
T ss_pred EECC
Confidence 9876
No 125
>3cij_A UPF0100 protein AF_0094; archaeal periplasmic binding protein, unknown function, metal binding protein, transport protein; 1.07A {Archaeoglobus fulgidus} PDB: 2ons_A 2onk_E 2onr_A
Probab=22.74 E-value=1.1e+02 Score=27.29 Aligned_cols=46 Identities=15% Similarity=0.148 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhhcCCCeeEeeEe--HHHHHHHHhcCCCCccEEEeCCC
Q psy8787 213 GLFLRCCRDAAEKFPEVKFEEKY--LDTVCLNMVQDPTQYDVLVMPNL 258 (364)
Q Consensus 213 ~lf~~~~~~va~~yp~i~~~~~~--vD~~~~~lv~~P~~fdVivt~Nl 258 (364)
..+.++.+++.++||+|+++..+ -..+..++...-..+||++..+.
T Consensus 17 ~~~~~l~~~F~~~~~gi~V~~~~~~s~~l~~~i~~~g~~~Dv~~~a~~ 64 (295)
T 3cij_A 17 EPMKAFKRAFEEKHPNVEVQTEAAGSAATIRKVTELGRKADVIATADY 64 (295)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEEECHHHHHHHHHTSCCCCSEEEESST
T ss_pred HHHHHHHHHHHHHCCCceEEEEeCcHHHHHHHHHhCCCCCCEEEEcCh
Confidence 46777777777889998887665 44456666652345999998765
No 126
>1elj_A Maltodextrin-binding protein; protein-carbohydrate complex, maltose binding protein, MBP fold, ABC transporter fold, thermophilic protein; HET: CME GLC; 1.85A {Pyrococcus furiosus} SCOP: c.94.1.1
Probab=22.50 E-value=84 Score=29.06 Aligned_cols=44 Identities=11% Similarity=0.088 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhhcCCCeeEeeEeHHHHHHHHhc---CCCCccEEEeC
Q psy8787 213 GLFLRCCRDAAEKFPEVKFEEKYLDTVCLNMVQ---DPTQYDVLVMP 256 (364)
Q Consensus 213 ~lf~~~~~~va~~yp~i~~~~~~vD~~~~~lv~---~P~~fdVivt~ 256 (364)
..+.+++++..+++|+|+++...++..-.+|.+ .-..+||+...
T Consensus 20 ~~~~~~i~~F~~~~p~i~V~~~~~~~~~~kl~~~~~~g~~PDv~~~~ 66 (381)
T 1elj_A 20 EVFQSLAEEYMALCPEVEIVFEQKPNLEDALKAAIPTGQGPDLFIWA 66 (381)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEECTTHHHHHHHHTTTTCSCSEEEEE
T ss_pred HHHHHHHHHHHHHCCCcEEEEEECCcHHHHHHHHHhcCCCCcEEEeC
Confidence 467788888888899999988877654444432 33457987654
No 127
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=21.32 E-value=2.6e+02 Score=24.44 Aligned_cols=73 Identities=11% Similarity=0.065 Sum_probs=39.9
Q ss_pred HHHHHHHHHhC--CCCceEEEEeCcccccccHHHHHHHHHHhh-cCCCeeEeeEe-----HH---HHHHHHhcCCCCccE
Q psy8787 184 AEFAFEYAKTN--NRSKVTAVHKANIMRMSDGLFLRCCRDAAE-KFPEVKFEEKY-----LD---TVCLNMVQDPTQYDV 252 (364)
Q Consensus 184 ar~Af~~A~~~--~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~-~yp~i~~~~~~-----vD---~~~~~lv~~P~~fdV 252 (364)
.+.|.++..++ |.++|.++.-... .+.....+-|++..+ .+++++..... .+ .++.++++....+|.
T Consensus 113 g~~~~~~l~~~~~g~~~i~~i~~~~~--~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a 190 (305)
T 3g1w_A 113 GMNAAYKMAELLDGEGEVAVITLPNQ--LNHQERTTGFKETLEAEFPAIEVIAVEDGRGDSLHSRRVAHQLLEDYPNLAG 190 (305)
T ss_dssp HHHHHHHHHHHTTTCEEEEEEECTTC--HHHHHHHHHHHHHHHHHCTTEEEEEEEECTTCHHHHHHHHHHHHHHCTTEEE
T ss_pred HHHHHHHHHHHhCCCcEEEEEeCCCc--ccHHHHHHHHHHHHHhhCCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCceE
Confidence 33444444444 6678888764322 123344455555443 46766554331 11 234566665567999
Q ss_pred EEeCCC
Q psy8787 253 LVMPNL 258 (364)
Q Consensus 253 ivt~Nl 258 (364)
|+|.|=
T Consensus 191 i~~~~d 196 (305)
T 3g1w_A 191 IFATEA 196 (305)
T ss_dssp EEESSH
T ss_pred EEECCC
Confidence 999873
No 128
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=21.25 E-value=1.8e+02 Score=25.07 Aligned_cols=72 Identities=10% Similarity=-0.015 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhhcC-CCeeEeeE-------eHHHHHHHHhcCCCCccEEE
Q psy8787 183 VAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKF-PEVKFEEK-------YLDTVCLNMVQDPTQYDVLV 254 (364)
Q Consensus 183 iar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~y-p~i~~~~~-------~vD~~~~~lv~~P~~fdViv 254 (364)
..+.|.++..++|.+++.++.-..-. .....+-|.+..+++ ..+..... ..-.++.++++....+|.|+
T Consensus 105 ~g~~a~~~L~~~G~~~i~~i~~~~~~---~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~ 181 (280)
T 3gyb_A 105 GAEIATKHLIDLGHTHIAHLRVGSGA---GLRRFESFEATMRAHGLEPLSNDYLGPAVEHAGYTETLALLKEHPEVTAIF 181 (280)
T ss_dssp HHHHHHHHHHHTTCCSEEEECCSSHH---HHHHHHHHHHHHHHTTCCCEECCCCSCCCHHHHHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHHHHHHHCCCCeEEEEeCCCch---HHHHHHHHHHHHHHcCcCCCcccccCCCCHHHHHHHHHHHHhCCCCCCEEE
Confidence 44555566666677888887643322 223344444444433 12211111 12234566776667899999
Q ss_pred eCC
Q psy8787 255 MPN 257 (364)
Q Consensus 255 t~N 257 (364)
|.|
T Consensus 182 ~~~ 184 (280)
T 3gyb_A 182 SSN 184 (280)
T ss_dssp ESS
T ss_pred ECC
Confidence 987
No 129
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=20.97 E-value=2e+02 Score=25.11 Aligned_cols=20 Identities=15% Similarity=0.404 Sum_probs=14.5
Q ss_pred HHHHHHhc-CCC-CccEEEeCC
Q psy8787 238 TVCLNMVQ-DPT-QYDVLVMPN 257 (364)
Q Consensus 238 ~~~~~lv~-~P~-~fdVivt~N 257 (364)
.++.++++ ... .+|.|+|.|
T Consensus 175 ~~~~~~l~~~~~~~~~ai~~~~ 196 (287)
T 3bbl_A 175 AMTLHLLDLSPERRPTAIMTLN 196 (287)
T ss_dssp HHHHHHHTSCTTTSCSEEEESS
T ss_pred HHHHHHHhhCCCCCCcEEEECC
Confidence 34566777 655 789999987
No 130
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=20.92 E-value=3.5e+02 Score=23.33 Aligned_cols=74 Identities=8% Similarity=-0.020 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhhcCC-C-----eeEeeEeH---HHHHHHHhcCCCCccEE
Q psy8787 183 VAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFP-E-----VKFEEKYL---DTVCLNMVQDPTQYDVL 253 (364)
Q Consensus 183 iar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp-~-----i~~~~~~v---D~~~~~lv~~P~~fdVi 253 (364)
..+.|.++-.++|.+++.++.-..-.. +.....+-+++..+++. . +....... -.++.++++....+|.|
T Consensus 114 ~~~~a~~~L~~~G~~~i~~i~~~~~~~-~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai 192 (289)
T 3g85_A 114 MGEKASLLFAKKRYKSAAAILTESLND-AMDNRNKGFIETCHKNGIKISENHIIAAENSIHGGVDAAKKLMKLKNTPKAL 192 (289)
T ss_dssp HHHHHHHHHHHTTCCBCEEEECCCSSH-HHHHHHHHHHHHHHHTTCBCCGGGEEECCSSHHHHHHHHHHHTTSSSCCSEE
T ss_pred HHHHHHHHHHHcCCCEEEEEeCCcccc-cHHHHHHHHHHHHHHcCCCCChhheeccCCCHHHHHHHHHHHHcCCCCCcEE
Confidence 344555565666878888776331111 11223344444433331 1 11111112 23567777777789999
Q ss_pred EeCC
Q psy8787 254 VMPN 257 (364)
Q Consensus 254 vt~N 257 (364)
+|.|
T Consensus 193 ~~~~ 196 (289)
T 3g85_A 193 FCNS 196 (289)
T ss_dssp EESS
T ss_pred EEcC
Confidence 9987
No 131
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=20.40 E-value=2.6e+02 Score=24.10 Aligned_cols=77 Identities=12% Similarity=-0.004 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhhcCCCeeEeeEe-HHHHHHHHhcCCCCccEEEeC
Q psy8787 178 EASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKY-LDTVCLNMVQDPTQYDVLVMP 256 (364)
Q Consensus 178 ~~~eriar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp~i~~~~~~-vD~~~~~lv~~P~~fdVivt~ 256 (364)
..+++.+++|+++|...+ .+|+++|=..--........+..+.+.+ .++.++... -......++.--+..|.||+.
T Consensus 165 ~~~~~al~~a~~la~~~~-a~l~ll~v~~~~~~~~~~l~~~~~~l~~--~~~~~~~~~~~g~~~~~i~~~a~~~dliV~G 241 (268)
T 3ab8_A 165 ESAVRALHALAPLARALG-LGVRVVSVHEDPARAEAWALEAEAYLRD--HGVEASALVLGGDAADHLLRLQGPGDLLALG 241 (268)
T ss_dssp HHHHHHHHHHHHHHHHHT-CCEEEEEECSSHHHHHHHHHHHHHHHHH--TTCCEEEEEECSCHHHHHHHHCCTTEEEEEE
T ss_pred HHHHHHHHHHHHhhhcCC-CEEEEEEEcCcHHHHHHHHHHHHHHHHH--cCCceEEEEeCCChHHHHHHHHHhCCEEEEC
Confidence 457889999999998765 4688887432211111223333333322 244444332 122333333332223988876
Q ss_pred C
Q psy8787 257 N 257 (364)
Q Consensus 257 N 257 (364)
.
T Consensus 242 ~ 242 (268)
T 3ab8_A 242 A 242 (268)
T ss_dssp C
T ss_pred C
Confidence 6
No 132
>2b3f_A Glucose-binding protein; protein-carbohydrate complex, periplasmic binding protein, galactose, GBP, sugar binding protein; HET: GAL; 1.56A {Thermus thermophilus HB27} PDB: 2b3b_A*
Probab=20.15 E-value=1.3e+02 Score=27.95 Aligned_cols=45 Identities=11% Similarity=0.025 Sum_probs=30.5
Q ss_pred cHHHHHHHHHHhhcCCCeeEeeEeH-----HHHHHHHh---cCCCCccEEEeC
Q psy8787 212 DGLFLRCCRDAAEKFPEVKFEEKYL-----DTVCLNMV---QDPTQYDVLVMP 256 (364)
Q Consensus 212 ~~lf~~~~~~va~~yp~i~~~~~~v-----D~~~~~lv---~~P~~fdVivt~ 256 (364)
...|.+++++..++||+|+++...+ |....+|. ..-...||+...
T Consensus 14 ~~~~~~~~~~f~~~~p~i~V~~~~~~~~~~~~~~~kl~~~~~~g~~pDv~~~~ 66 (400)
T 2b3f_A 14 GPALEALIRLYKQKYPGVEVINATVTGGAGVNARAVLKTRMLGGDPPDTFQVH 66 (400)
T ss_dssp CHHHHHHHHHHHHHCTTCEEEEEECCCGGGHHHHHHHHHHHHTTCCCSEEEEE
T ss_pred HHHHHHHHHHHHHHCCCceEEEEecCCCcchhHHHHHHHHHhCCCCCCEEeec
Confidence 3578888888888899988887765 34433332 233457888765
No 133
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=20.12 E-value=2.3e+02 Score=25.49 Aligned_cols=74 Identities=9% Similarity=-0.024 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhhcCC-Ce-----eEeeEeH---HHHHHHHhcCCCCccEE
Q psy8787 183 VAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFP-EV-----KFEEKYL---DTVCLNMVQDPTQYDVL 253 (364)
Q Consensus 183 iar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp-~i-----~~~~~~v---D~~~~~lv~~P~~fdVi 253 (364)
-.+.|.++-.++|.+++.++.-..-.. +.....+-|.+..+++. .+ ....... -.++.+|++...++|.|
T Consensus 168 ~~~~a~~~L~~~G~~~I~~i~~~~~~~-~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai 246 (338)
T 3dbi_A 168 TSFNAVAELINAGHQEIAFLTGSMDSP-TSIERLAGYKDALAQHGIALNEKLIANGKWTPASGAEGVEMLLERGAKFSAL 246 (338)
T ss_dssp HHHHHHHHHHHTTCCSEEEECCCTTCH-HHHHHHHHHHHHHHHTTCCCCGGGEECCCSSHHHHHHHHHHHHHTTCCCSEE
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCCCCc-cHHHHHHHHHHHHHHCCCCCCcceEEeCCCCHHHHHHHHHHHHcCCCCCeEE
Confidence 344556666667888888885431111 22233444544444431 11 1111112 24566777777789999
Q ss_pred EeCC
Q psy8787 254 VMPN 257 (364)
Q Consensus 254 vt~N 257 (364)
+|.|
T Consensus 247 ~~~n 250 (338)
T 3dbi_A 247 VASN 250 (338)
T ss_dssp EESS
T ss_pred EECC
Confidence 9987
Done!